Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CHD5	26038	broad.mit.edu	37	1	6203900	6203900	+	Missense_Mutation	SNP	C	T	T	rs142551574	by1000genomes	TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:6203900C>T	uc001amb.1	-	13	2126	c.2026G>A	c.(2026-2028)GAC>AAC	p.D676N	CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	676					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		ATGGGCGTGTCCGGCGGCTTC	0.627													50	60					0	0	0.048971	0	0
ESPN	83715	broad.mit.edu	37	1	6488420	6488420	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:6488420C>T	uc001amy.2	+	2	597	c.429C>T	c.(427-429)CAC>CAT	p.H143H		NM_031475	NP_113663	B1AK53	ESPN_HUMAN	espin	143	ANK 5.				sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	actin filament binding|SH3 domain binding				0	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		TGCCTATCCACTACGCTGCCG	0.652													48	63					0	0	0.048971	0	0
CAMTA1	23261	broad.mit.edu	37	1	7724953	7724953	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:7724953C>T	uc001aoi.2	+	9	2553	c.2346C>T	c.(2344-2346)TCC>TCT	p.S782S		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	782					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		ACTTCATCTCCGTGGAGGGGG	0.637													132	262					0	0	0.048971	0	0
UBE4B	10277	broad.mit.edu	37	1	10195090	10195090	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:10195090C>T	uc001aqs.3	+	16	2783	c.2070C>T	c.(2068-2070)TTC>TTT	p.F690F	UBE4B_uc001aqr.3_Silent_p.F561F|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Silent_p.F145F|UBE4B_uc001aqt.1_Silent_p.F30F	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	690					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		TGCTGAATTTCCTTTGGGTAC	0.318													27	32					0	0	0.034045	0	0
C1orf127	148345	broad.mit.edu	37	1	11009732	11009732	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:11009732C>T	uc010oao.1	-	7	797	c.792G>A	c.(790-792)CAG>CAA	p.Q264Q	C1orf127_uc001arr.1_Silent_p.Q246Q|C1orf127_uc001ars.1_Intron	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	264										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		AAAGCCATTCCTGGGCAGCTG	0.642													7	12					0	0	0.038147	0	0
C1orf127	148345	broad.mit.edu	37	1	11015049	11015049	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:11015049G>A	uc010oao.1	-	5	531	c.526C>T	c.(526-528)CAG>TAG	p.Q176*	C1orf127_uc001arr.1_Nonsense_Mutation_p.Q158*|C1orf127_uc001ars.1_Nonsense_Mutation_p.Q176*	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	176										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		ATACTCACCTGGACCTGGAGC	0.552													30	43					0	0	0.050027	0	0
PTCHD2	57540	broad.mit.edu	37	1	11579922	11579922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:11579922C>T	uc001ash.3	+	9	2323	c.2185C>T	c.(2185-2187)CGC>TGC	p.R729C	PTCHD2_uc001asi.1_Missense_Mutation_p.R729C	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	729	Cytoplasmic (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CGTCAAGAGCCGCTGGGTGAT	0.667													48	68					0	0	0.048971	0	0
VPS13D	55187	broad.mit.edu	37	1	12433865	12433865	+	Silent	SNP	C	T	T	rs145410334		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:12433865C>T	uc001atv.2	+	55	11010	c.10869C>T	c.(10867-10869)CTC>CTT	p.L3623L	VPS13D_uc001atw.2_Silent_p.L3598L|VPS13D_uc001atx.2_Silent_p.L2810L|VPS13D_uc009vnl.2_RNA	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3622					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		GTGCGGAGCTCGTTTTGGATG	0.323													6	55					0	0	0.038147	0	0
LOC649330	649330	broad.mit.edu	37	1	12907791	12907791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:12907791C>T	uc009vno.2	-	1	447	c.352G>A	c.(352-354)GAT>AAT	p.D118N	HNRNPCL1_uc010obf.1_Missense_Mutation_p.D118N	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	118							nucleic acid binding|nucleotide binding				0						TCATAATAATCCCGTTGAAAG	0.507													46	51					0	0	0.042209	0	0
LOC649330	649330	broad.mit.edu	37	1	12907847	12907847	+	Missense_Mutation	SNP	C	T	T	rs150230498		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:12907847C>T	uc009vno.2	-	1	391	c.296G>A	c.(295-297)CGA>CAA	p.R99Q	HNRNPCL1_uc010obf.1_Missense_Mutation_p.R99Q	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	99							nucleic acid binding|nucleotide binding				0						CGCTGCTGATCGTTTCACACC	0.488													15	158					0	0	0.024245	0	0
PRAMEF8	391002	broad.mit.edu	37	1	12979896	12979896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:12979896C>T	uc001aup.2	+	4	1171	c.1088C>T	c.(1087-1089)TCC>TTC	p.S363F		NM_001012276	NP_001012276	Q5VWM4	PRAM8_HUMAN	PRAME family member 8	363	LRR 2.										0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ATCATGGATTCCCAACTCAGC	0.597													26	73					0	0	0.098360	0	0
PRAMEF6	440561	broad.mit.edu	37	1	13001263	13001263	+	Silent	SNP	C	T	T	rs150586267		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:13001263C>T	uc001auq.2	-	3	506	c.420G>A	c.(418-420)AGG>AGA	p.R140R	PRAMEF5_uc001aur.2_Intron	NM_001010889	NP_001010889	Q5VXH4	PRAM6_HUMAN	PRAME family member 6	140											0	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GTCCTCTCATCCTTGGACAGT	0.507													82	756					0	0	0.048971	0	0
KAZ	23254	broad.mit.edu	37	1	15386767	15386767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:15386767C>T	uc001avm.3	+	6	1297	c.1016C>T	c.(1015-1017)TCC>TTC	p.S339F	KAZ_uc009vog.1_Missense_Mutation_p.S339F|KAZ_uc010obj.1_Missense_Mutation_p.S339F|KAZ_uc001avo.2_Missense_Mutation_p.S333F|KAZ_uc001avp.2_Missense_Mutation_p.S245F|KAZ_uc001avq.2_Missense_Mutation_p.S245F|KAZ_uc001avr.2_Missense_Mutation_p.S242F	NM_201628	NP_963922	Q674X7	KAZRN_HUMAN	kazrin isoform E	339					keratinization	cornified envelope|cytoplasm|desmosome|nucleus					0						GACATCAACTCCCCTCGACAC	0.706													65	107					0	0	0.048971	0	0
PADI6	353238	broad.mit.edu	37	1	17698834	17698834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:17698834G>A	uc001bak.1	+	1	94	c.94G>A	c.(94-96)GAA>AAA	p.E32K		NM_207421	NP_997304	Q6TGC4	PADI6_HUMAN	peptidylarginine deiminase type 6	24					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	GTTGGGCACAGAAATCTGCTT	0.527													99	138					0	0	0.048971	0	0
Unknown	0	broad.mit.edu	37	1	21752830	21752830	+	RNA	SNP	C	T	T	rs139145324	by1000genomes	TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:21752830C>T	uc001bep.1	-	3		c.146G>A								Homo sapiens cDNA FLJ25572 fis, clone JTH05111.																		TGAAAGGAGTCGAATACCATC	0.473													6	36					0	0	0.105934	0	0
E2F2	1870	broad.mit.edu	37	1	23850887	23850887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:23850887G>A	uc001bhe.1	-	2	774	c.346C>T	c.(346-348)CCC>TCC	p.P116S	uc001bhf.1_5'Flank	NM_004091	NP_004082	Q14209	E2F2_HUMAN	E2F transcription factor 2	116	Potential.				G1 phase of mitotic cell cycle|transcription initiation from RNA polymerase II promoter	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(2)|skin(2)	4		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.52e-24)|Colorectal(126;6.25e-08)|COAD - Colon adenocarcinoma(152;3.42e-06)|GBM - Glioblastoma multiforme(114;8.98e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00102)|KIRC - Kidney renal clear cell carcinoma(1967;0.00366)|STAD - Stomach adenocarcinoma(196;0.0132)|READ - Rectum adenocarcinoma(331;0.0652)|Lung(427;0.0888)|LUSC - Lung squamous cell carcinoma(448;0.19)		TTGGGGCTGGGGAGGCCATCC	0.597													15	31					0	0	0.020292	0	0
MYOM3	127294	broad.mit.edu	37	1	24417294	24417294	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:24417294C>T	uc001bin.3	-	12	1588	c.1425G>A	c.(1423-1425)AGG>AGA	p.R475R	MYOM3_uc001bim.3_Silent_p.R132R|MYOM3_uc001bio.2_Silent_p.R475R|MYOM3_uc001bip.1_Silent_p.R132R	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	475										skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		CACCTGTCTTCCTCCGGGCTG	0.582													39	84					0	0	0.092188	0	0
EXTL1	2134	broad.mit.edu	37	1	26349709	26349709	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:26349709G>C	uc001blf.2	+	1	1439	c.572G>C	c.(571-573)CGG>CCG	p.R191P		NM_004455	NP_004446	Q92935	EXTL1_HUMAN	exostoses-like 1	191	Lumenal (Potential).				skeletal system development	integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|protein binding			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.18e-05)|all_lung(284;9.43e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;6.44e-26)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|BRCA - Breast invasive adenocarcinoma(304;0.000954)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00594)|READ - Rectum adenocarcinoma(331;0.0649)		GACTCCTTCCGGCCCGGCTTT	0.682													16	49					0	0	0.028581	0	0
DLGAP3	58512	broad.mit.edu	37	1	35370855	35370855	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:35370855C>T	uc001byc.2	-	1	130	c.130G>A	c.(130-132)GAG>AAG	p.E44K		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	44					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				AAGCGGGGCTCGGTGGAGAAG	0.687													11	20					0	0	0.093190	0	0
KIAA0754	643314	broad.mit.edu	37	1	39879020	39879020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:39879020C>T	uc009vvt.1	+	1	3845	c.3083C>T	c.(3082-3084)TCC>TTC	p.S1028F	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc010oiu.1_Intron	NM_015038	NP_055853	O94854	K0754_HUMAN	hypothetical protein LOC643314	892	Ala-rich.|2.										0	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GAGCCCACCTCCCCAGCTGCT	0.726													15	16					0	0	0.062417	0	0
RIMKLA	284716	broad.mit.edu	37	1	42880226	42880226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:42880226G>A	uc001chi.2	+	5	895	c.757G>A	c.(757-759)GGC>AGC	p.G253S		NM_173642	NP_775913	Q8IXN7	RIMKA_HUMAN	ribosomal modification protein rimK-like family	253	ATP-grasp.				protein modification process	cytoplasm	acid-amino acid ligase activity|ATP binding|metal ion binding				0						CAACATCCTAGGCATGGACTT	0.517													135	177					0	0	0.048971	0	0
CCDC30	728621	broad.mit.edu	37	1	43108203	43108203	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:43108203G>A	uc009vwk.1	+	12	1808	c.1698G>A	c.(1696-1698)AGG>AGA	p.R566R	CCDC30_uc001chm.2_Silent_p.R264R|CCDC30_uc001chn.2_Silent_p.R355R	NM_001080850	NP_001074319	Q5VVM6	CCD30_HUMAN	coiled-coil domain containing 30	566	Potential.										0						TAGAAAAAAGGAAACTTCAGG	0.463													75	153					0	0	0.048971	0	0
SLC6A9	6536	broad.mit.edu	37	1	44476402	44476402	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:44476402C>T	uc001cll.2	-	3	594	c.402G>A	c.(400-402)GGG>GGA	p.G134G	SLC6A9_uc009vxe.2_5'UTR|SLC6A9_uc010okm.1_Silent_p.G61G|SLC6A9_uc001clm.2_Silent_p.G80G|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Intron|SLC6A9_uc001cln.2_Silent_p.G61G|SLC6A9_uc010oko.1_Intron|SLC6A9_uc010okp.1_Intron	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	134						integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	GGGTACCTCCCCCGTTGCGAT	0.642													15	50					0	0	0.024245	0	0
PIK3R3	8503	broad.mit.edu	37	1	46509440	46509440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:46509440G>A	uc001cpb.3	-	10	2047	c.1291C>T	c.(1291-1293)CAT>TAT	p.H431Y	PIK3R3_uc009vyb.2_Missense_Mutation_p.H372Y|PIK3R3_uc009vyc.2_Missense_Mutation_p.H448Y|PIK3R3_uc001cpc.3_Missense_Mutation_p.H431Y|PIK3R3_uc010olw.1_Missense_Mutation_p.H477Y|PIK3R3_uc010olv.1_Missense_Mutation_p.H221Y	NM_003629	NP_003620	Q92569	P55G_HUMAN	phosphoinositide-3-kinase, regulatory subunit 3	431	SH2 2.				insulin receptor signaling pathway|platelet activation|T cell costimulation		1-phosphatidylinositol-3-kinase activity|protein binding				0	Acute lymphoblastic leukemia(166;0.155)					TGCTGGTAATGGAGCACTAGC	0.537													26	64					0	0	0.091800	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47351253	47351253	+	RNA	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:47351253G>A	uc001cqo.1	-	4		c.408C>T			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						ACAAGTCCTCGACCTTATGAA	0.448													23	38					0	0	0.091800	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47548008	47548008	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:47548008C>T	uc001cqu.1	+	4	370	c.367C>T	c.(367-369)CGA>TGA	p.R123*		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	123	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						TTCATAAGGTCGAGGACTTGT	0.448													6	60					0	0	0.029380	0	0
GLIS1	148979	broad.mit.edu	37	1	54060487	54060487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:54060487C>T	uc001cvr.1	-	3	656	c.89G>A	c.(88-90)AGC>AAC	p.S30N		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	30					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						GGTGGCGAGGCTTCGGCCCGG	0.706													14	32					0	0	0.020292	0	0
LRRC42	115353	broad.mit.edu	37	1	54417927	54417927	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:54417927C>T	uc001cwj.1	+	2	455	c.255C>T	c.(253-255)TCC>TCT	p.S85S	LRRC42_uc001cwl.1_Silent_p.S85S|LRRC42_uc001cwk.1_Silent_p.S85S|LRRC42_uc009vzm.1_Silent_p.S85S	NM_052940	NP_443172	Q9Y546	LRC42_HUMAN	leucine rich repeat containing 42	85											0						TTCGGTACTCCGCCAAATCCC	0.483													90	88					0	0	0.048971	0	0
FAM151A	338094	broad.mit.edu	37	1	55075158	55075158	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:55075158G>A	uc001cxn.2	-	8	1673	c.1541C>T	c.(1540-1542)GCC>GTC	p.A514V	ACOT11_uc001cxj.1_3'UTR|ACOT11_uc001cxl.1_3'UTR|ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	514						integral to membrane					0						CAGCAGCATGGCCTGCATCTG	0.642													44	111					0	0	0.045515	0	0
C8B	732	broad.mit.edu	37	1	57422542	57422542	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:57422542C>T	uc001cyp.2	-	3	358	c.291G>A	c.(289-291)GGG>GGA	p.G97G	C8B_uc010oon.1_Silent_p.G35G|C8B_uc010ooo.1_Silent_p.G45G	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	97	TSP type-1 1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TGCACGGTTCCCCATGGAACT	0.522													67	138					0	0	0.048971	0	0
PGM1	5236	broad.mit.edu	37	1	64095185	64095185	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:64095185C>T	uc001dbh.2	+	2	549	c.336C>T	c.(334-336)ATC>ATT	p.I112I	PGM1_uc010ooy.1_5'UTR|PGM1_uc010ooz.1_Silent_p.I130I	NM_002633	NP_002624	P36871	PGM1_HUMAN	phosphoglucomutase 1	112					cellular calcium ion homeostasis|galactose catabolic process|glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity			ovary(2)|kidney(1)	3						TTGGTGGGATCATTCTGACAG	0.458													126	114					0	0	0.048971	0	0
C1orf173	127254	broad.mit.edu	37	1	75037536	75037536	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:75037536C>T	uc001dgg.2	-	14	4077	c.3858G>A	c.(3856-3858)AGG>AGA	p.R1286R		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1286	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CCGCTTCCTCCCTGAACTTTT	0.567													58	159					0	0	0.048971	0	0
C1orf173	127254	broad.mit.edu	37	1	75037580	75037580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:75037580C>T	uc001dgg.2	-	14	4033	c.3814G>A	c.(3814-3816)GAA>AAA	p.E1272K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1272	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GCAACAGCTTCCTGGGTCCTT	0.567													47	126					0	0	0.048971	0	0
AK5	26289	broad.mit.edu	37	1	78001663	78001663	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:78001663C>T	uc001dhn.2	+	13	1817	c.1560C>T	c.(1558-1560)GCC>GCT	p.A520A	AK5_uc001dho.2_Silent_p.A494A	NM_174858	NP_777283	Q9Y6K8	KAD5_HUMAN	adenylate kinase 5 isoform 1	520					ADP biosynthetic process|ATP metabolic process|dADP biosynthetic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine ribonucleotide biosynthetic process|signal transduction	centrosome|cytosol	adenylate kinase activity|ATP binding|cAMP-dependent protein kinase regulator activity|nucleoside kinase activity			skin(1)	1						GCCTAGAAGCCTACTACCGAG	0.567													23	39					0	0	0.108266	0	0
TGFBR3	7049	broad.mit.edu	37	1	92182152	92182152	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:92182152G>A	uc001doh.2	-	11	2146	c.1680C>T	c.(1678-1680)TCC>TCT	p.S560S	TGFBR3_uc009wde.2_Silent_p.S337S|TGFBR3_uc010osy.1_Silent_p.S518S|TGFBR3_uc001doi.2_Silent_p.S559S|TGFBR3_uc001doj.2_Silent_p.S559S	NM_003243	NP_003234	Q03167	TGBR3_HUMAN	transforming growth factor, beta receptor III	560	ZP.|Extracellular (Potential).				BMP signaling pathway|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cell growth|cell migration|definitive erythrocyte differentiation|heart trabecula formation|immune response|intracellular protein kinase cascade|liver development|negative regulation of cellular component movement|negative regulation of epithelial cell proliferation|palate development|pathway-restricted SMAD protein phosphorylation|response to follicle-stimulating hormone stimulus|response to luteinizing hormone stimulus|response to prostaglandin E stimulus|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis	external side of plasma membrane|extracellular space|inhibin-betaglycan-ActRII complex|integral to plasma membrane|intracellular membrane-bounded organelle	coreceptor activity|heparin binding|PDZ domain binding|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type III|type II transforming growth factor beta receptor binding			ovary(3)	3		all_lung(203;0.00719)|Lung NSC(277;0.0268)		all cancers(265;0.0108)|Epithelial(280;0.0825)		GGGTGAACAGGGAAGCATCTC	0.463													127	335					0	0	0.048971	0	0
EPHX4	253152	broad.mit.edu	37	1	92495805	92495805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:92495805G>A	uc001don.2	+	1	273	c.169G>A	c.(169-171)GAG>AAG	p.E57K		NM_173567	NP_775838	Q8IUS5	EPHX4_HUMAN	abhydrolase domain containing 7	57						integral to membrane	hydrolase activity			central_nervous_system(1)	1						GCCCGCCCGGGAGCACCCTCC	0.711													7	17					0	0	0.029380	0	0
CCDC18	343099	broad.mit.edu	37	1	93687259	93687259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:93687259C>T	uc001dpq.2	+	15	2578	c.2410C>T	c.(2410-2412)CAT>TAT	p.H804Y	CCDC18_uc009wdl.1_Missense_Mutation_p.H321Y	NM_206886	NP_996769	Q5T9S5	CCD18_HUMAN	sarcoma antigen NY-SAR-41	685	Potential.									ovary(2)|breast(2)|pancreas(1)	5		all_lung(203;0.00196)|Lung NSC(277;0.00903)|Melanoma(281;0.099)|all_neural(321;0.185)|Glioma(108;0.203)		all cancers(265;0.00166)|GBM - Glioblastoma multiforme(16;0.00551)|Epithelial(280;0.0967)		CAAACAACATCATCTTGAATC	0.318													88	243					0	0	0.048971	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94650952	94650952	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:94650952C>T	uc001dqj.3	-	17	2235	c.1866G>A	c.(1864-1866)ACG>ACA	p.T622T	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Silent_p.T188T	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	622	Phorbol-ester/DAG-type.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		CCCTACATTTCGTGGGGGATC	0.398													35	71					0	0	0.074837	0	0
DPYD	1806	broad.mit.edu	37	1	97547948	97547948	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:97547948C>T	uc001drv.2	-	22	2982	c.2845G>A	c.(2845-2847)GAT>AAT	p.D949N		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	949	4Fe-4S ferredoxin-type 2.				'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	ATTTCTTCATCAATCATAGCC	0.393													103	86					0	0	0.048971	0	0
COL11A1	1301	broad.mit.edu	37	1	103428226	103428226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:103428226C>T	uc001dul.2	-	39	3325	c.3007G>A	c.(3007-3009)GGA>AGA	p.G1003R	COL11A1_uc001duk.2_Missense_Mutation_p.G199R|COL11A1_uc001dum.2_Missense_Mutation_p.G1015R|COL11A1_uc001dun.2_Missense_Mutation_p.G964R|COL11A1_uc009weh.2_Missense_Mutation_p.G887R	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1003	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CCTTCTTTTCCTGCAGCACCA	0.473													50	110					0	0	0.048971	0	0
ATXN7L2	127002	broad.mit.edu	37	1	110033633	110033633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:110033633C>T	uc001dxr.2	+	10	1463	c.1448C>T	c.(1447-1449)CCC>CTC	p.P483L	ATXN7L2_uc001dxs.2_Missense_Mutation_p.P110L|ATXN7L2_uc001dxt.2_5'UTR	NM_153340	NP_699171	Q5T6C5	AT7L2_HUMAN	ataxin 7-like 2	483										ovary(2)	2		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0426)|Epithelial(280;0.0675)|READ - Rectum adenocarcinoma(129;0.0693)|all cancers(265;0.071)|LUSC - Lung squamous cell carcinoma(189;0.228)		GGCACCTGCCCCCGCCTTCCA	0.637											OREG0013635	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	711					0	0	0.049695	0	0
GPR61	83873	broad.mit.edu	37	1	110086489	110086489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:110086489G>A	uc001dxy.2	+	2	1528	c.845G>A	c.(844-846)GGA>GAA	p.G282E		NM_031936	NP_114142	Q9BZJ8	GPR61_HUMAN	G protein-coupled receptor 61	282	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(2)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0426)|Colorectal(144;0.11)|Epithelial(280;0.128)|all cancers(265;0.132)|LUSC - Lung squamous cell carcinoma(189;0.228)		ACGTTTGGGGGAGGGAAAGCA	0.622													74	67					0	0	0.048971	0	0
EPS8L3	79574	broad.mit.edu	37	1	110302423	110302423	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:110302423G>A	uc001dyr.1	-	4	277	c.132C>T	c.(130-132)GTC>GTT	p.V44V	EPS8L3_uc001dys.1_Silent_p.V44V|EPS8L3_uc001dyq.1_Silent_p.V44V|EPS8L3_uc009wfm.1_Silent_p.V10V|EPS8L3_uc009wfn.1_Silent_p.V10V|EPS8L3_uc009wfo.1_Intron	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	44						cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		CGGGCCCCTGGACTCTCTGAC	0.617													38	73					0	0	0.111260	0	0
ADORA3	140	broad.mit.edu	37	1	112043112	112043112	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:112043112G>A	uc001ebh.3	-	2	1184	c.417C>T	c.(415-417)TTC>TTT	p.F139F	ADORA3_uc001ebg.3_Intron|ADORA3_uc001ebf.2_Intron	NM_000677	NP_000668	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 2	139	Helical; Name=4; (By similarity).				activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	ATCCCACCAGGAATGACACCA	0.498													44	136					0	0	0.039052	0	0
KCND3	3752	broad.mit.edu	37	1	112318868	112318868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:112318868C>T	uc001ebu.1	-	8	2279	c.1799G>A	c.(1798-1800)GGA>GAA	p.G600E	KCND3_uc001ebv.1_Missense_Mutation_p.G581E	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	600	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		TGGTCTCAGTCCGTCGTCTGC	0.562													40	42					0	0	0.092188	0	0
OLFML3	56944	broad.mit.edu	37	1	114524200	114524200	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:114524200C>T	uc001eer.1	+	3	1139	c.1030C>T	c.(1030-1032)CGC>TGC	p.R344C	OLFML3_uc001ees.1_Missense_Mutation_p.R324C|OLFML3_uc001eet.1_Missense_Mutation_p.R200C	NM_020190	NP_064575	Q9NRN5	OLFL3_HUMAN	olfactomedin-like 3 precursor	344	Olfactomedin-like.				multicellular organismal development	extracellular region					0	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CAGTCGGGCCCGCATCCAGTG	0.597													42	78					0	0	0.048971	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			154	108					0	0	0.048971	0	0
CD2	914	broad.mit.edu	37	1	117311313	117311313	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:117311313C>T	uc001egu.3	+	5	993	c.964C>T	c.(964-966)CAG>TAG	p.Q322*		NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	322	Cytoplasmic (Potential).|Pro-rich.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	ACAAGTTCACCAGCAGAAAGG	0.577													81	108					0	0	0.048971	0	0
TRIM45	80263	broad.mit.edu	37	1	117661263	117661263	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:117661263G>T	uc001egz.2	-	2	1203	c.615C>A	c.(613-615)TTC>TTA	p.F205L	TRIM45_uc009whe.2_Missense_Mutation_p.F205L|TRIM45_uc001eha.2_Missense_Mutation_p.F101L	NM_025188	NP_079464	Q9H8W5	TRI45_HUMAN	tripartite motif-containing 45 isoform 1	205	B box-type 2.					cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)	1	Lung SC(450;0.225)	all_cancers(81;0.000979)|all_lung(203;7.65e-05)|all_epithelial(167;0.000134)|Lung NSC(69;0.000389)		Lung(183;0.0537)|Colorectal(144;0.172)|LUSC - Lung squamous cell carcinoma(189;0.187)		GCCGGTCACAGAACTCACAGA	0.562													55	101					1.54886e-18	1.60591e-18	0.048971	1	0
SPAG17	200162	broad.mit.edu	37	1	118574476	118574476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:118574476C>T	uc001ehk.2	-	25	3516	c.3448G>A	c.(3448-3450)GAT>AAT	p.D1150N		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1150						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GTTTCTAAATCAGGATCCTTA	0.318													21	59					0	0	0.055883	0	0
LOC647121	647121	broad.mit.edu	37	1	121306467	121306467	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:121306467G>A	uc009wht.1	+	1	44	c.15G>A	c.(13-15)GTG>GTA	p.V5V	LOC647121_uc001eiu.1_RNA					Homo sapiens cDNA FLJ46881 fis, clone UTERU3015647, moderately similar to Embigin precursor.												0						ATAAATATGTGATCAATGGAA	0.343													35	28					0	0	0.069456	0	0
NOTCH2NL	388677	broad.mit.edu	37	1	145273243	145273243	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:145273243C>T	uc001emn.3	+	3	467	c.97C>T	c.(97-99)CGC>TGC	p.R33C	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_5'UTR|NOTCH2NL_uc001emm.3_Missense_Mutation_p.R33C|NOTCH2NL_uc001emo.2_Missense_Mutation_p.R33C|NOTCH2NL_uc010oyh.1_RNA	NM_203458	NP_982283	Q7Z3S9	NT2NL_HUMAN	Notch homolog 2 N-terminal like protein	33	EGF-like 2.				cell differentiation|multicellular organismal development|Notch signaling pathway	cytoplasm|extracellular region	calcium ion binding			ovary(1)	1						TGAGAAGAACCGCTGCCAGAA	0.532													70	411					0	0	0.048971	0	0
HRNR	388697	broad.mit.edu	37	1	152191326	152191326	+	Missense_Mutation	SNP	C	T	T	rs149730442		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:152191326C>T	uc001ezt.1	-	3	2855	c.2779G>A	c.(2779-2781)GGC>AGC	p.G927S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	927	10.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAAGACTGGCCTGAGCCAGAC	0.607													47	164					0	0	0.048971	0	0
FLG2	388698	broad.mit.edu	37	1	152323637	152323637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:152323637C>T	uc001ezw.3	-	3	6698	c.6625G>A	c.(6625-6627)GGA>AGA	p.G2209R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2209							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTGACTGTCCATGTCGAGAT	0.507													132	157					0	0	0.048971	0	0
LCE1B	353132	broad.mit.edu	37	1	152785047	152785047	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:152785047C>T	uc001faq.2	+	1	601	c.125C>T	c.(124-126)TCC>TTC	p.S42F		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	42					keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCAGTCTCTTCCTGCTGCAGT	0.522													49	54					0	0	0.048971	0	0
LELP1	149018	broad.mit.edu	37	1	153177315	153177315	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:153177315C>T	uc001fbl.2	+	2	242	c.132C>T	c.(130-132)TTC>TTT	p.F44F		NM_001010857	NP_001010857	Q5T871	LELP1_HUMAN	late cornified envelope-like proline-rich 1	44	Cys/Pro-rich.									ovary(1)	1	all_lung(78;3.51e-31)|Lung NSC(65;1.34e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AACGCTGTTTCGAAAAGTGCC	0.567													48	43					0	0	0.048971	0	0
PBXIP1	57326	broad.mit.edu	37	1	154919211	154919211	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:154919211G>A	uc001ffr.2	-	10	998	c.939C>T	c.(937-939)CTC>CTT	p.L313L	PBXIP1_uc001ffs.2_Silent_p.L284L|PBXIP1_uc010pep.1_Silent_p.L158L	NM_020524	NP_065385	Q96AQ6	PBIP1_HUMAN	pre-B-cell leukemia homeobox interacting protein	313	Potential.				cell differentiation|multicellular organismal development|negative regulation of transcription, DNA-dependent	cytosol|microtubule|nucleus	protein binding|transcription corepressor activity			large_intestine(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GAGCCCCCCGGAGCTGGGCAT	0.627													15	49					0	0	0.020292	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155920151	155920151	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:155920151G>A	uc001fmt.2	-	21	2944	c.2826C>T	c.(2824-2826)GAC>GAT	p.D942D	ARHGEF2_uc001fmq.2_Silent_p.D180D|ARHGEF2_uc001fmr.2_Silent_p.D914D|ARHGEF2_uc001fms.2_Silent_p.D941D|ARHGEF2_uc001fmu.2_Silent_p.D986D	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	942					actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CAGTGTCAGGGTCACTGCTGT	0.607													59	54					0	0	0.048971	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155920178	155920179	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:155920178_155920179GG>AA	uc001fmt.2	-	21	2916_2917	c.2798_2799CC>TT	c.(2797-2799)CCC>CTT	p.P933L	ARHGEF2_uc001fmq.2_Missense_Mutation_p.P171L|ARHGEF2_uc001fmr.2_Missense_Mutation_p.P905L|ARHGEF2_uc001fms.2_Missense_Mutation_p.P932L|ARHGEF2_uc001fmu.2_Missense_Mutation_p.P977L	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	933					actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					GCCGCTCTTCGGGGCTCCCCAG	0.629													54	36					0	0	0.004672	0	0
RHBG	57127	broad.mit.edu	37	1	156351864	156351864	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:156351864C>T	uc010pho.1	+	7	1022	c.984C>T	c.(982-984)ATC>ATT	p.I328I	RHBG_uc010phm.1_Missense_Mutation_p.S161F|RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_Silent_p.I259I|RHBG_uc009wrz.2_Silent_p.I296I|RHBG_uc001for.2_Silent_p.I298I	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	328	Cytoplasmic (Potential).				transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					TCCAGCCCATCCTTGAATCAA	0.577													21	93					0	0	0.062417	0	0
FCRL5	83416	broad.mit.edu	37	1	157494247	157494247	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:157494247G>A	uc001fqu.2	-	10	2219	c.2061C>T	c.(2059-2061)TCC>TCT	p.S687S	FCRL5_uc009wsm.2_Silent_p.S687S|FCRL5_uc010phv.1_Silent_p.S687S|FCRL5_uc010phw.1_Silent_p.S602S	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	687	Extracellular (Potential).|Ig-like C2-type 7.		S -> C (in a breast cancer sample; somatic mutation).			integral to membrane|plasma membrane	receptor activity	p.S687C(1)		ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				ACAGGATTGGGGAGGAGCCTC	0.582													16	62					0	0	0.033300	0	0
FCRL5	83416	broad.mit.edu	37	1	157516930	157516931	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:157516930_157516931CC>TT	uc001fqu.2	-	3	267_268	c.109_110GG>AA	c.(109-111)GGA>AAA	p.G37K	FCRL5_uc009wsm.2_Missense_Mutation_p.G37K|FCRL5_uc010phv.1_Missense_Mutation_p.G37K|FCRL5_uc010phw.1_Intron|FCRL5_uc001fqv.1_Missense_Mutation_p.G37K|FCRL5_uc010phx.1_5'UTR	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	37	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				CACTCTCTCTCCTTGGAAGACT	0.495													32	105					0	0	0.004672	0	0
CD1E	913	broad.mit.edu	37	1	158325195	158325195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:158325195C>T	uc001fse.2	+	3	700	c.461C>T	c.(460-462)TCC>TTC	p.S154F	CD1E_uc010pid.1_Missense_Mutation_p.S152F|CD1E_uc010pie.1_Missense_Mutation_p.S55F|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Missense_Mutation_p.S154F|CD1E_uc001fsk.2_Intron|CD1E_uc001fsj.2_Intron|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Missense_Mutation_p.S154F|CD1E_uc001fry.2_Missense_Mutation_p.S154F|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Missense_Mutation_p.S154F|CD1E_uc009wsv.2_Missense_Mutation_p.S55F|CD1E_uc001frz.2_Intron|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	154					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					CAAGGAATTTCCTGGGAGCCA	0.448													22	99					0	0	0.055883	0	0
OR10T2	128360	broad.mit.edu	37	1	158368849	158368849	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:158368849G>A	uc010pih.1	-	1	408	c.408C>T	c.(406-408)ATC>ATT	p.I136I		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					TTTTGTTTATGATGAGTGTGT	0.453													13	81					0	0	0.038395	0	0
OR10K2	391107	broad.mit.edu	37	1	158390112	158390112	+	Missense_Mutation	SNP	G	T	T	rs149783516	byFrequency	TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:158390112G>T	uc010pii.1	-	1	545	c.545C>A	c.(544-546)GCT>GAT	p.A182D		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					GAGGACAGGAGCAATGTCACA	0.443													31	24					1.99505e-19	2.07084e-19	0.050027	1	0
OR10X1	128367	broad.mit.edu	37	1	158549165	158549165	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:158549165C>T	uc010pin.1	-	1	525	c.525G>A	c.(523-525)GAG>GAA	p.E175E		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	175	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TCAGTGCAGTCTCTGTAAGAG	0.443													11	35					0	0	0.080935	0	0
VSIG8	391123	broad.mit.edu	37	1	159827553	159827553	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:159827553G>T	uc001fuh.2	-	4	770	c.634C>A	c.(634-636)CAC>AAC	p.H212N	C1orf204_uc001fuf.1_5'Flank|C1orf204_uc001fug.1_5'Flank	NM_001013661	NP_001013683	Q5VU13	VSIG8_HUMAN	V-set and immunoglobulin domain containing 8	212	Extracellular (Potential).|Ig-like V-type 2.					integral to membrane				central_nervous_system(1)	1	all_hematologic(112;0.0597)					ATGGAGCTGTGGAAGGACTCC	0.572													23	27					1.12875e-08	1.15741e-08	0.030593	1	0
CD84	8832	broad.mit.edu	37	1	160523163	160523163	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:160523163C>T	uc001fwh.3	-	4	789	c.765G>A	c.(763-765)AGG>AGA	p.R255R	CD84_uc001fwf.3_Intron|CD84_uc001fwg.3_Intron|CD84_uc009wtn.2_Intron|CD84_uc001fwi.3_Intron|CD84_uc001fwj.2_Silent_p.R255R	NM_003874	NP_003865	Q9UIB8	SLAF5_HUMAN	CD84 molecule	255	Cytoplasmic (Potential).				blood coagulation|defense response|homophilic cell adhesion|leukocyte migration	integral to plasma membrane	receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(52;3.62e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			CTGGGAAAATCCTACCTTGTC	0.458													16	29					0	0	0.024245	0	0
CD84	8832	broad.mit.edu	37	1	160549207	160549207	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:160549207C>T	uc001fwh.3	-	1	45	c.21G>A	c.(19-21)TGG>TGA	p.W7*	CD84_uc001fwf.3_Nonsense_Mutation_p.W7*|CD84_uc001fwg.3_Nonsense_Mutation_p.W7*|CD84_uc009wtn.2_Nonsense_Mutation_p.W7*|CD84_uc001fwi.3_Nonsense_Mutation_p.W7*|CD84_uc001fwj.2_Nonsense_Mutation_p.W7*|CD84_uc001fwk.2_Nonsense_Mutation_p.W7*	NM_003874	NP_003865	Q9UIB8	SLAF5_HUMAN	CD84 molecule	7					blood coagulation|defense response|homophilic cell adhesion|leukocyte migration	integral to plasma membrane	receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(52;3.62e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			GGAGCAAGATCCATAGGTGGT	0.453													43	59					0	0	0.048971	0	0
PBX1	5087	broad.mit.edu	37	1	164776782	164776782	+	Silent	SNP	G	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:164776782G>T	uc001gct.2	+	5	963	c.705G>T	c.(703-705)CGG>CGT	p.R235R	PBX1_uc010pku.1_Silent_p.R235R|PBX1_uc010pkv.1_Silent_p.R152R|PBX1_uc001gcs.2_Silent_p.R235R|PBX1_uc010pkw.1_Silent_p.R125R	NM_002585	NP_002576	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	235	Homeobox; TALE-type.				negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	soft_tissue(3)|lung(1)|skin(1)	5						TACAAAGGCGGAAGAGACGGA	0.378			T	TCF3|EWSR1	pre B-ALL|myoepithelioma								18	90					1.33834e-09	1.37383e-09	0.043863	1	0
LMX1A	4009	broad.mit.edu	37	1	165175244	165175244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:165175244C>T	uc001gcy.1	-	7	1066	c.845G>A	c.(844-846)GGG>GAG	p.G282E	LMX1A_uc001gcz.1_Missense_Mutation_p.G282E|LMX1A_uc001gcw.1_5'UTR|LMX1A_uc001gcx.1_Missense_Mutation_p.G33E	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	282						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					TCCTTCCATCCCAGCACTCCC	0.567													24	81					0	0	0.083992	0	0
DCAF6	55827	broad.mit.edu	37	1	167960470	167960470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:167960470C>T	uc001gew.2	+	6	823	c.581C>T	c.(580-582)GCC>GTC	p.A194V	DCAF6_uc001gev.2_Missense_Mutation_p.A194V|DCAF6_uc001gex.2_Missense_Mutation_p.A194V|DCAF6_uc010plk.1_Missense_Mutation_p.A163V|DCAF6_uc001gey.2_Missense_Mutation_p.A47V	NM_001017977	NP_001017977	Q58WW2	DCAF6_HUMAN	IQ motif and WD repeats 1 isoform b	194	WD 4.				positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CGACGTGCTGCCACGTCTGTT	0.363													12	49					0	0	0.024245	0	0
XCL2	6846	broad.mit.edu	37	1	168511246	168511246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:168511246G>A	uc001gfn.3	-	2	194	c.161C>T	c.(160-162)TCC>TTC	p.S54F		NM_003175	NP_003166	Q9UBD3	XCL2_HUMAN	chemokine (C motif) ligand 2 precursor	54					blood circulation|chemotaxis|immune response|signal transduction	extracellular space	chemokine activity			ovary(1)	1	all_hematologic(923;0.215)					TGCTCTCAAGGAGCCTTCCGT	0.512													18	69					0	0	0.049695	0	0
ANKRD45	339416	broad.mit.edu	37	1	173628433	173628433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:173628433G>A	uc001gja.1	-	2	186	c.125C>T	c.(124-126)CCT>CTT	p.P42L	ANKRD45_uc001gjb.3_Missense_Mutation_p.P42L	NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	58											0						TGTGAGAGCAGGTTGTAAAAG	0.358													18	20					0	0	0.033300	0	0
TNR	7143	broad.mit.edu	37	1	175325460	175325460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:175325460G>A	uc001gkp.1	-	14	3194	c.3113C>T	c.(3112-3114)TCT>TTT	p.S1038F	TNR_uc009wwu.1_Missense_Mutation_p.S1038F	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	1038	Fibronectin type-III 8.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CTCACGAGTAGAAAAGTTGGT	0.483													51	65					0	0	0.048971	0	0
CACNA1E	777	broad.mit.edu	37	1	181705457	181705457	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:181705457G>A	uc001gow.2	+	22	3474	c.3309G>A	c.(3307-3309)GAG>GAA	p.E1103E	CACNA1E_uc009wxs.2_Silent_p.E991E|CACNA1E_uc001gox.1_Silent_p.E329E|CACNA1E_uc009wxt.2_Silent_p.E329E	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1103	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AGGAGGCAGAGATCAGAgagg	0.383													9	7					0	0	0.047766	0	0
CACNA1E	777	broad.mit.edu	37	1	181741343	181741343	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:181741343C>T	uc001gow.2	+	37	5280	c.5115C>T	c.(5113-5115)TCC>TCT	p.S1705S	CACNA1E_uc009wxs.2_Silent_p.S1593S|CACNA1E_uc001gox.1_Silent_p.S931S|CACNA1E_uc009wxt.2_Silent_p.S931S	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1705	IV.|Helical; Name=S6 of repeat IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ACTTTGTCTCCTTCATCTTCT	0.552													49	55					0	0	0.048971	0	0
CACNA1E	777	broad.mit.edu	37	1	181765951	181765951	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:181765951C>T	uc001gow.2	+	46	6392	c.6227C>T	c.(6226-6228)TCC>TTC	p.S2076F	CACNA1E_uc009wxs.2_Missense_Mutation_p.S1964F|CACNA1E_uc009wxt.2_Missense_Mutation_p.S1345F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2119	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CGCCGTCAATCCAGGTCACCC	0.587													5	8					0	0	0.014758	0	0
HMCN1	83872	broad.mit.edu	37	1	186072702	186072702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:186072702C>T	uc001grq.1	+	69	10901	c.10672C>T	c.(10672-10674)CCT>TCT	p.P3558S		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3558	Ig-like C2-type 34.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AATCCCAGCCCCTAAAATGAC	0.453													40	46					0	0	0.092188	0	0
RGS18	64407	broad.mit.edu	37	1	192153442	192153442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:192153442C>T	uc001gsg.2	+	5	642	c.466C>T	c.(466-468)CAC>TAC	p.H156Y		NM_130782	NP_570138	Q9NS28	RGS18_HUMAN	regulator of G-protein signalling 18	156	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)	3						CCTTGATTTTCACACAAAAGA	0.363													25	32					0	0	0.083992	0	0
CFH	3075	broad.mit.edu	37	1	196694292	196694292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:196694292C>T	uc001gtj.3	+	12	1978	c.1738C>T	c.(1738-1740)CCT>TCT	p.P580S		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	580	Sushi 10.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						ACACTTAGTTCCTGATCGCAA	0.338													10	38					0	0	0.058154	0	0
CRB1	23418	broad.mit.edu	37	1	197316531	197316531	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:197316531C>T	uc001gtz.2	+	4	1045	c.910C>T	c.(910-912)CTT>TTT	p.L304F	CRB1_uc010poz.1_Missense_Mutation_p.L235F|CRB1_uc001gty.1_Missense_Mutation_p.L304F|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Intron|CRB1_uc010ppb.1_Missense_Mutation_p.L304F|CRB1_uc010ppc.1_RNA	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	304	Extracellular (Potential).|EGF-like 8.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CTTGATGCCTCTTTGTTGGTC	0.423													38	35					0	0	0.098360	0	0
KIF21B	23046	broad.mit.edu	37	1	200948729	200948729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:200948729G>A	uc001gvs.1	-	30	4411	c.4094C>T	c.(4093-4095)TCC>TTC	p.S1365F	KIF21B_uc001gvr.1_Missense_Mutation_p.S1352F|KIF21B_uc009wzl.1_Missense_Mutation_p.S1365F|KIF21B_uc010ppn.1_Missense_Mutation_p.S1352F	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1365	WD 2.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GGTGGACACGGAGAACACAAG	0.582											OREG0014066	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	90	98					0	0	0.048971	0	0
SYT2	127833	broad.mit.edu	37	1	202571092	202571092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:202571092C>T	uc001gye.2	-	6	920	c.727G>A	c.(727-729)GTG>ATG	p.V243M	SYT2_uc010pqb.1_Missense_Mutation_p.V243M|SYT2_uc009xaf.2_Missense_Mutation_p.V73M	NM_001136504	NP_001129976	Q8N9I0	SYT2_HUMAN	synaptotagmin II	243	Phospholipid binding (By similarity).|Cytoplasmic (Potential).				neurotransmitter secretion	cell junction|chromaffin granule membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	protein binding|transporter activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.169)		Botulinum Toxin Type B(DB00042)	TTCATAGGCACCTTTACCTCT	0.547													29	104					0	0	0.034045	0	0
CHIT1	1118	broad.mit.edu	37	1	203186114	203186114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:203186114G>A	uc001gzn.2	-	11	1400	c.1304C>T	c.(1303-1305)TCC>TTC	p.S435F	FMOD_uc010pqi.1_Intron|CHIT1_uc001gzm.1_Intron|CHIT1_uc009xal.1_Missense_Mutation_p.S197F|CHIT1_uc009xam.1_RNA|CHIT1_uc009xan.1_RNA|CHIT1_uc001gzo.2_Missense_Mutation_p.S426F	NM_003465	NP_003456	Q13231	CHIT1_HUMAN	chitotriosidase precursor	435	Chitin-binding type-2.				chitin catabolic process|immune response|response to bacterium	extracellular space|lysosome	cation binding|chitin binding|endochitinase activity				0						GTAGAAGCTGGACCGTTCCCG	0.602											OREG0014113	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	74	73					0	0	0.048971	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204433251	204433251	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:204433251G>T	uc001haw.2	-	6	1678	c.1199C>A	c.(1198-1200)ACT>AAT	p.T400N	PIK3C2B_uc010pqv.1_Missense_Mutation_p.T400N|PIK3C2B_uc001hax.1_Missense_Mutation_p.T400N|PIK3C2B_uc009xbd.1_RNA	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	400					cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			CAAGTCTACAGTGGAGGAACC	0.542													36	98					5.04308e-16	5.21717e-16	0.086207	1	0
CDK18	5129	broad.mit.edu	37	1	205496942	205496943	+	Missense_Mutation	DNP	CC	TT	TT	rs141496311		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:205496942_205496943CC>TT	uc001hcr.2	+	9	1059_1060	c.840_841CC>TT	c.(838-843)CTCCGG>CTTTGG	p.R281W	CDK18_uc001hcp.2_Missense_Mutation_p.R251W|CDK18_uc001hcq.2_Missense_Mutation_p.R251W|CDK18_uc010prj.1_Missense_Mutation_p.R162W|CDK18_uc001hcs.2_Missense_Mutation_p.R162W|CDK18_uc009xbm.1_Missense_Mutation_p.R176W|CDK18_uc001hct.2_5'Flank	NM_212503	NP_997668	Q07002	CDK18_HUMAN	PCTAIRE protein kinase 3 isoform a	249	Protein kinase.						ATP binding|cyclin-dependent protein kinase activity|protein binding|signal transducer activity			stomach(2)	2						TCCAGCTGCTCCGGGGCCTCGC	0.629													44	52					0	0	0.004672	0	0
CR2	1380	broad.mit.edu	37	1	207651280	207651280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:207651280G>A	uc001hfw.2	+	15	2870	c.2776G>A	c.(2776-2778)GAA>AAA	p.E926K	CR2_uc001hfv.2_Missense_Mutation_p.E985K|CR2_uc009xch.2_Missense_Mutation_p.E864K	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	926	Sushi 15.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						GAAAGGGCTGGAACCAAGGAA	0.438													7	28					0	0	0.058154	0	0
PLXNA2	5362	broad.mit.edu	37	1	208234099	208234099	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:208234099G>A	uc001hgz.2	-	13	3428	c.2670C>T	c.(2668-2670)ATC>ATT	p.I890I		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	890	Extracellular (Potential).|IPT/TIG 1.				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		CATGGTGGGCGATCTCGGAGA	0.627													32	37					0	0	0.041601	0	0
LOC642587	642587	broad.mit.edu	37	1	209602648	209602648	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:209602648C>T	uc009xcn.2	+	2	389	c.6C>T	c.(4-6)TTC>TTT	p.F2F	LOC642587_uc010psk.1_5'Flank|MIR205_hsa-mir-205|MI0000285_5'Flank	NM_001104548	NP_001098018			hypothetical protein LOC642587												0				OV - Ovarian serous cystadenocarcinoma(81;0.0422)		gccTCATGTTCTTTTTCATTA	0.249													12	7					0	0	0.093190	0	0
DTL	51514	broad.mit.edu	37	1	212274371	212274371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:212274371C>T	uc009xdc.2	+	14	2353	c.2039C>T	c.(2038-2040)CCG>CTG	p.P680L	DTL_uc010ptb.1_Missense_Mutation_p.P638L|DTL_uc001hiz.3_Missense_Mutation_p.P409L	NM_016448	NP_057532	Q9NZJ0	DTL_HUMAN	denticleless homolog	680					DNA replication|G2/M transition DNA damage checkpoint|protein monoubiquitination|protein polyubiquitination|response to UV|translesion synthesis|ubiquitin-dependent protein catabolic process	centrosome|Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|nuclear membrane	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00796)|all cancers(67;0.0385)|Epithelial(68;0.102)		CCACGAAGTCCGTCATCCCAG	0.483													10	34					0	0	0.069234	0	0
C1orf65	164127	broad.mit.edu	37	1	223567444	223567444	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:223567444C>T	uc001hoa.2	+	1	730	c.627C>T	c.(625-627)GCC>GCT	p.A209A		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	209										central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		GCGTGTGCGCCCAGAAGAGAG	0.622													37	70					0	0	0.111260	0	0
TP53BP2	7159	broad.mit.edu	37	1	223983600	223983600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:223983600G>A	uc010pvb.1	-	13	2933	c.2641C>T	c.(2641-2643)CCA>TCA	p.P881S	TP53BP2_uc001hod.2_Missense_Mutation_p.P752S|TP53BP2_uc010puz.1_Missense_Mutation_p.P114S|TP53BP2_uc010pva.1_Missense_Mutation_p.P520S	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	875	SH3-binding (Potential).|Pro-rich.				apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		TCCCCAGATGGGTATGGTGGG	0.557													50	57					0	0	0.048971	0	0
LEFTY1	10637	broad.mit.edu	37	1	226075178	226075178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:226075178G>A	uc001hpo.2	-	3	728	c.658C>T	c.(658-660)CGC>TGC	p.R220C	LEFTY1_uc010pvj.1_Missense_Mutation_p.P328L	NM_020997	NP_066277	O75610	LFTY1_HUMAN	left-right determination, factor B	220					cell growth|multicellular organismal development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity|transforming growth factor beta receptor binding				0	Breast(184;0.197)					GAGGCAAAGCGGACCAGCTTG	0.701													15	19					0	0	0.043863	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232649950	232649950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:232649950G>A	uc001hvg.2	-	1	1294	c.1136C>T	c.(1135-1137)TCC>TTC	p.S379F		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	379					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				CCCTAAAGGGGACTCACAGTT	0.522													28	95					0	0	0.108266	0	0
PCNXL2	80003	broad.mit.edu	37	1	233363099	233363099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:233363099C>T	uc001hvl.2	-	10	2612	c.2377G>A	c.(2377-2379)GAA>AAA	p.E793K	PCNXL2_uc009xfu.2_Intron|PCNXL2_uc009xfv.1_Intron|PCNXL2_uc001hvq.1_Missense_Mutation_p.E92K	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	793						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GACGAGGCTTCCAGATCCTGA	0.353													27	29					0	0	0.034045	0	0
ARID4B	51742	broad.mit.edu	37	1	235338551	235338551	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:235338551G>A	uc001hwq.2	-	22	4110	c.3612C>T	c.(3610-3612)CTC>CTT	p.L1204L	ARID4B_uc001hwr.2_Silent_p.L1118L|ARID4B_uc001hwp.2_RNA	NM_016374	NP_057458	Q4LE39	ARI4B_HUMAN	AT rich interactive domain 4B isoform 1	1204					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding			ovary(2)|lung(1)	3	Ovarian(103;0.0473)|Breast(184;0.23)	all_cancers(173;0.000782)|Prostate(94;0.0132)|all_epithelial(177;0.0808)|Lung SC(1967;0.24)	OV - Ovarian serous cystadenocarcinoma(106;2.86e-05)			TGGGTTCCTTGAGATCAGGAT	0.398													32	98					0	0	0.059317	0	0
ACTN2	88	broad.mit.edu	37	1	236912519	236912519	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:236912519G>A	uc001hyf.2	+	14	1815	c.1611G>A	c.(1609-1611)GAG>GAA	p.E537E	ACTN2_uc001hyg.2_Silent_p.E329E|ACTN2_uc009xgi.1_Silent_p.E537E|ACTN2_uc010pxu.1_Silent_p.E226E|ACTN2_uc001hyh.2_Silent_p.E225E	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	537	Spectrin 3.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			GCGCTATGGAGGATCTGCAAG	0.443													36	39					0	0	0.069456	0	0
CHRM3	1131	broad.mit.edu	37	1	240072012	240072012	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:240072012C>T	uc001hyp.2	+	5	2040	c.1261C>T	c.(1261-1263)CCA>TCA	p.P421S		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	421	Cytoplasmic (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	AGGCAGTTTTCCAAAAAGCTT	0.567													4	19					0	0	0.009096	0	0
OR2W3	343171	broad.mit.edu	37	1	248058924	248058924	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:248058924C>T	uc001idp.1	+	3	305	c.36C>T	c.(34-36)TTC>TTT	p.F12F	OR2W3_uc010pzb.1_Silent_p.F12F	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AAACCCATTTCATCCTACTGG	0.428													16	24					0	0	0.033300	0	0
OR14C36	127066	broad.mit.edu	37	1	248512563	248512563	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:248512563C>T	uc010pzl.1	+	1	487	c.487C>T	c.(487-489)CAG>TAG	p.Q163*		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	163	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CAGCACATTCCAGCTGCCCTT	0.512													22	64					0	0	0.062417	0	0
OR2G6	391211	broad.mit.edu	37	1	248685610	248685610	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:248685610C>T	uc001ien.1	+	1	663	c.663C>T	c.(661-663)ATC>ATT	p.I221I		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ATGGCTTTATCACTCAAGCTG	0.478													30	87					0	0	0.041601	0	0
OLAH	55301	broad.mit.edu	37	10	15106407	15106407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:15106407G>A	uc001inu.2	+	5	562	c.308G>A	c.(307-309)GGA>GAA	p.G103E	ACBD7_uc010qby.1_Intron|OLAH_uc001int.2_Missense_Mutation_p.G156E	NM_001039702	NP_001034791	Q9NV23	SAST_HUMAN	oleoyl-ACP hydrolase isoform 2	103					fatty acid biosynthetic process		myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity				0						TTTAGTATGGGATCCTACATT	0.358													17	8					0	0	0.038395	0	0
GPR158	57512	broad.mit.edu	37	10	25861749	25861749	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:25861749G>A	uc001isj.2	+	7	1746	c.1686G>A	c.(1684-1686)GGG>GGA	p.G562G		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	562	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						TTGGCCAGGGGAAAACATCCG	0.443													17	16					0	0	0.038395	0	0
MYO3A	53904	broad.mit.edu	37	10	26414347	26414347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:26414347C>T	uc001isn.2	+	19	2284	c.1924C>T	c.(1924-1926)CGG>TGG	p.R642W	MYO3A_uc009xko.1_Missense_Mutation_p.R642W|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	642	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GCTTTGCATTCGGGCAGATGA	0.418													17	7					0	0	0.028581	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	G	G	rs2257765		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453													4	16					0	0	0.009096	0	0
SYT15	83849	broad.mit.edu	37	10	46969395	46969395	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:46969395G>A	uc001jea.2	-	2	219	c.66C>T	c.(64-66)ATC>ATT	p.I22I	SYT15_uc001jdz.2_Silent_p.I22I|SYT15_uc001jeb.2_Intron|SYT15_uc010qfp.1_5'Flank	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	22	Helical; Signal-anchor for type III membrane protein; (Potential).					integral to membrane|plasma membrane					0						AGCTTGCCCCGATCAACAGCA	0.637													8	16					0	0	0.038147	0	0
Unknown	0	broad.mit.edu	37	10	49218553	49218553	+	Missense_Mutation	SNP	T	C	C	rs77581903		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:49218553T>C	uc001jgd.2	-	8	1745	c.1586A>G	c.(1585-1587)CAT>CGT	p.H529R	uc001jge.1_5'Flank					RecName: Full=Arf-GAP, GTPase, ANK repeat and PH domain-containing protein 11; AltName: Full=Centaurin-gamma-like protein KIAA1975;																		ATATTTGGAATGGATCCAGCG	0.567													4	20					0	0	0.021553	0	0
C10orf128	170371	broad.mit.edu	37	10	50396379	50396379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:50396379C>T	uc001jhn.3	-	1	29	c.3G>A	c.(1-3)ATG>ATA	p.M1I	C10orf128_uc001jhm.3_Missense_Mutation_p.M1I|C10orf128_uc010qgo.1_Missense_Mutation_p.M1I|C10orf128_uc001jho.3_Missense_Mutation_p.M1I	NM_001010863	NP_001010863	Q5T292	CJ128_HUMAN	hypothetical protein LOC170371 precursor	1						integral to membrane				lung(1)	1						CCCCCAAGTTCATGCTGGCGC	0.647													20	15					0	0	0.076483	0	0
C10orf71	118461	broad.mit.edu	37	10	50530553	50530553	+	Translation_Start_Site	SNP	C	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:50530553C>A	uc010qgp.1	+	3	302	c.-37C>A	c.(-39--35)ACCTG>ACATG			NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2												0						CCAGAGACACCTGCCGGCTGA	0.498													6	2					3.59834e-05	3.67347e-05	0.021553	1	0
A1CF	29974	broad.mit.edu	37	10	52603813	52603813	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:52603813C>T	uc001jjj.2	-	4	357	c.169G>A	c.(169-171)GAA>AAA	p.E57K	A1CF_uc010qhn.1_Missense_Mutation_p.E65K|A1CF_uc001jji.2_Missense_Mutation_p.E57K|A1CF_uc001jjh.2_Missense_Mutation_p.E65K|A1CF_uc010qho.1_Missense_Mutation_p.E65K|A1CF_uc009xov.2_Missense_Mutation_p.E57K|A1CF_uc001jjk.1_Missense_Mutation_p.E57K	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	57	RRM 1.				cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						ATAAAAATTTCACAGCCCCTT	0.428													46	39					0	0	0.039052	0	0
ARID5B	84159	broad.mit.edu	37	10	63852746	63852746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:63852746C>T	uc001jlt.1	+	10	3550	c.3524C>T	c.(3523-3525)CCA>CTA	p.P1175L		NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	1175					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					GCTGCCTTTCCATCTTCCCAG	0.512													18	51					0	0	0.038395	0	0
TET1	80312	broad.mit.edu	37	10	70405196	70405196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:70405196C>T	uc001jok.3	+	4	3215	c.2710C>T	c.(2710-2712)CCA>TCA	p.P904S		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	904					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						CTCAGAAGCCCCATCAGAGAA	0.453													44	40					0	0	0.039052	0	0
CDH23	64072	broad.mit.edu	37	10	73559349	73559349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:73559349G>A	uc001jrx.3	+	50	7702	c.7325G>A	c.(7324-7326)GGA>GAA	p.G2442E	CDH23_uc001jsg.3_Missense_Mutation_p.G202E|CDH23_uc001jsh.3_Missense_Mutation_p.G202E|CDH23_uc001jsi.3_Missense_Mutation_p.G202E	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2442	Cadherin 23.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						TACAGCCTTGGAGATGGAGAG	0.542													39	25					0	0	0.092188	0	0
NRG3	10718	broad.mit.edu	37	10	84711264	84711264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:84711264C>T	uc001kco.2	+	5	1121	c.1094C>T	c.(1093-1095)TCA>TTA	p.S365L	NRG3_uc010qlz.1_Missense_Mutation_p.S364L|NRG3_uc001kcp.2_Missense_Mutation_p.S144L|NRG3_uc001kcq.2_Missense_Mutation_p.S15L|NRG3_uc001kcr.2_Missense_Mutation_p.S15L	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	365	Helical; Note=Internal signal sequence; (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		CTGTCAATTTCATGTATCATC	0.378													22	21					0	0	0.083992	0	0
LDB3	11155	broad.mit.edu	37	10	88451795	88451795	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:88451795C>T	uc001kdv.2	+	5	855	c.832C>T	c.(832-834)CTG>TTG	p.L278L	LDB3_uc010qml.1_Silent_p.L278L|LDB3_uc010qmm.1_Silent_p.L346L|LDB3_uc001kdu.2_Silent_p.L231L|LDB3_uc009xsz.2_Intron|LDB3_uc001kdr.2_Silent_p.L231L|LDB3_uc009xsy.2_Silent_p.L346L|LDB3_uc001kds.2_Silent_p.L278L|LDB3_uc001kdt.2_RNA	NM_007078	NP_009009	O75112	LDB3_HUMAN	LIM domain binding 3 isoform 1	278						cytoskeleton|perinuclear region of cytoplasm|pseudopodium	zinc ion binding			ovary(1)	1						CTTCCGCATCCTGGCCCAGAT	0.617													15	16					0	0	0.020292	0	0
KIF20B	9585	broad.mit.edu	37	10	91497763	91497763	+	Silent	SNP	T	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:91497763T>C	uc001kgs.1	+	20	3237	c.3165T>C	c.(3163-3165)TCT>TCC	p.S1055S	KIF20B_uc001kgr.1_Silent_p.S1015S|KIF20B_uc001kgt.1_Silent_p.S266S|KIF20B_uc009xtw.1_RNA	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	1055					cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						CTTTCCACTCTAGTATTGAAG	0.333													62	36					0	0	0.048971	0	0
PLCE1	51196	broad.mit.edu	37	10	95931128	95931128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:95931128G>A	uc001kjk.2	+	4	2318	c.1684G>A	c.(1684-1686)GAC>AAC	p.D562N	PLCE1_uc010qnx.1_Missense_Mutation_p.D562N|PLCE1_uc001kjm.2_Missense_Mutation_p.D254N	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	562	Ras-GEF.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				CTTAACACGGGACTTGGGCAC	0.532													53	36					0	0	0.048971	0	0
NOC3L	64318	broad.mit.edu	37	10	96099536	96099536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:96099536G>A	uc001kjq.1	-	17	2010	c.1922C>T	c.(1921-1923)TCA>TTA	p.S641L		NM_022451	NP_071896	Q8WTT2	NOC3L_HUMAN	nucleolar complex associated 3 homolog	641						nuclear speck|nucleolus	binding			ovary(1)	1		Colorectal(252;0.0897)				GCCAATACTTGAATTTGGAAG	0.368													13	7					0	0	0.093190	0	0
CYP2C19	1557	broad.mit.edu	37	10	96540335	96540335	+	Silent	SNP	C	T	T	rs145272564		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:96540335C>T	uc010qnz.1	+	4	561	c.561C>T	c.(559-561)TTC>TTT	p.F187F	CYP2C19_uc009xus.1_Silent_p.F52F|CYP2C19_uc010qny.1_Silent_p.F165F	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	187					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	AGAAACGTTTCGATTATAAAG	0.403													38	35					0	0	0.069456	0	0
TRIM8	81603	broad.mit.edu	37	10	104416543	104416543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:104416543C>T	uc001kvz.2	+	6	1211	c.1088C>T	c.(1087-1089)CCC>CTC	p.P363L		NM_030912	NP_112174	Q9BZR9	TRIM8_HUMAN	tripartite motif-containing 8	363						cytoplasm|PML body	ligase activity|protein homodimerization activity|zinc ion binding			ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		CAGAGTGTCCCCCTGTACCCT	0.642													42	39					0	0	0.098360	0	0
SORCS1	114815	broad.mit.edu	37	10	108923956	108923956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:108923956C>T	uc001kym.2	-	1	337	c.329G>A	c.(328-330)CGG>CAG	p.R110Q	SORCS1_uc001kyl.2_Missense_Mutation_p.R110Q|SORCS1_uc009xxs.2_Missense_Mutation_p.R110Q|SORCS1_uc001kyn.1_Missense_Mutation_p.R110Q|SORCS1_uc001kyo.2_Missense_Mutation_p.R110Q	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	110	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		CGCTCCGCTCCGTCTCCTCCG	0.706													15	8					0	0	0.024245	0	0
CASP7	840	broad.mit.edu	37	10	115480927	115480927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:115480927G>A	uc001lan.2	+	3	421	c.247G>A	c.(247-249)GGT>AGT	p.G83S	CASP7_uc001lam.2_Missense_Mutation_p.G83S|CASP7_uc001lao.2_Missense_Mutation_p.G116S|CASP7_uc001lap.2_Missense_Mutation_p.G83S|CASP7_uc001laq.2_Missense_Mutation_p.G83S|CASP7_uc010qsa.1_Missense_Mutation_p.G168S|CASP7_uc010qsb.1_Missense_Mutation_p.G58S	NM_033339	NP_203125	P55210	CASP7_HUMAN	caspase 7 isoform alpha	83					activation of caspase activity by cytochrome c|cellular component disassembly involved in apoptosis|induction of apoptosis by intracellular signals|proteolysis	cytosol|endoplasmic reticulum membrane|mitochondrial membrane|nucleoplasm	cysteine-type endopeptidase activity|protein binding			ovary(1)	1		Colorectal(252;0.0946)|Breast(234;0.188)		Epithelial(162;0.012)|all cancers(201;0.014)		TAAAGTGACAGGTGGGTGTGT	0.448													19	24					0	0	0.049695	0	0
AFAP1L2	84632	broad.mit.edu	37	10	116056780	116056780	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:116056780G>A	uc001lbn.2	-	18	2688	c.2387C>T	c.(2386-2388)TCG>TTG	p.S796L	AFAP1L2_uc001lbo.2_Missense_Mutation_p.S792L|AFAP1L2_uc010qse.1_Missense_Mutation_p.S849L|AFAP1L2_uc001lbp.2_Missense_Mutation_p.S820L|AFAP1L2_uc001lbm.2_Missense_Mutation_p.S235L|AFAP1L2_uc010qsd.1_Missense_Mutation_p.S358L|AFAP1L2_uc001lbq.1_Missense_Mutation_p.S318L	NM_001001936	NP_001001936	Q8N4X5	AF1L2_HUMAN	KIAA1914 protein isoform 1	796					inflammatory response|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of transcription, DNA-dependent|regulation of interleukin-6 production|regulation of mitotic cell cycle	cytoplasm	protein tyrosine kinase activator activity|SH2 domain binding|SH3 domain binding			ovary(1)|breast(1)	2		Colorectal(252;0.175)|Breast(234;0.231)		Epithelial(162;0.0219)|all cancers(201;0.0561)		GACCACGACCGAGAGAGGCCT	0.567													33	39					0	0	0.059317	0	0
PNLIPRP1	5407	broad.mit.edu	37	10	118359630	118359630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:118359630G>A	uc001lco.1	+	9	904	c.886G>A	c.(886-888)GAT>AAT	p.D296N	PNLIPRP1_uc001lcp.2_Missense_Mutation_p.D296N	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	296					lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		CCTCAATCCCGATGGGTTTGC	0.483													42	49					0	0	0.098360	0	0
C10orf82	143379	broad.mit.edu	37	10	118425131	118425131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:118425131G>A	uc001lcr.2	-	3	317	c.262C>T	c.(262-264)CCC>TCC	p.P88S	C10orf82_uc001lcs.1_Missense_Mutation_p.P88S	NM_144661	NP_653262	Q8WW14	CJ082_HUMAN	hypothetical protein LOC143379	88											0				all cancers(201;0.0143)		AGGATCAGGGGGTGGTACTGC	0.602													17	33					0	0	0.055883	0	0
JAKMIP3	282973	broad.mit.edu	37	10	133930691	133930691	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:133930691G>A	uc001lkx.3	+	2	246	c.246G>A	c.(244-246)GAG>GAA	p.E82E		NM_001105521	NP_001098991			Janus kinase and microtubule interacting protein											breast(1)	1		all_cancers(35;5.63e-09)|all_epithelial(44;9.25e-07)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|Colorectal(31;0.0721)|all_neural(114;0.0726)|Breast(234;0.0949)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;0.000104)|Epithelial(32;0.000142)|all cancers(32;0.000185)|BRCA - Breast invasive adenocarcinoma(275;0.224)		TGCACGAGGAGAAGATGAAGG	0.592													27	21					0	0	0.099896	0	0
LOC653544	653544	broad.mit.edu	37	10	135491113	135491113	+	Missense_Mutation	SNP	G	A	A	rs150899513	by1000genomes	TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr10:135491113G>A	uc010qvi.1	+	1	835	c.724G>A	c.(724-726)GCC>ACC	p.A242T		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	242						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGTCGCCTTCGCCCACACCGG	0.776													4	18					0	0	0.038147	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651402	1651402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:1651402C>T	uc001lty.2	+	1	370	c.332C>T	c.(331-333)TCC>TTC	p.S111F		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	111	8 X 4 AA repeats of C-C-X-P.			Missing (in Ref. 1; BAD20201 and 2; CAF31639).		keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GCCTGTGGCTCCTGTGGGGGG	0.697													37	75					0	0	0.069456	0	0
OR52K2	119774	broad.mit.edu	37	11	4470892	4470892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:4470892C>T	uc001lyz.1	+	1	323	c.323C>T	c.(322-324)TCC>TTC	p.S108F		NM_001005172	NP_001005172	Q8NGK3	O52K2_HUMAN	olfactory receptor, family 52, subfamily K,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.48e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0821)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTCCTTCACTCCTTCTCCATC	0.532													27	48					0	0	0.099896	0	0
OR52M1	119772	broad.mit.edu	37	11	4567312	4567312	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:4567312C>T	uc010qyf.1	+	1	892	c.892C>T	c.(892-894)CGC>TGC	p.R298C		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	298	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTATGCTGTTCGCACCAAGCA	0.448													15	46					0	0	0.033300	0	0
OR51S1	119692	broad.mit.edu	37	11	4869999	4869999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:4869999C>T	uc010qyo.1	-	1	440	c.440G>A	c.(439-441)GGT>GAT	p.G147D		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	147	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCTAATTACACCATTGGTGAG	0.557													59	122					0	0	0.048971	0	0
OR51A4	401666	broad.mit.edu	37	11	4967631	4967631	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:4967631C>T	uc010qys.1	-	1	700	c.700G>A	c.(700-702)GAG>AAG	p.E234K		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTAAGCTGCTCCTTTTTGGAT	0.473													7	100					0	0	0.080935	0	0
OR51A2	401667	broad.mit.edu	37	11	4976244	4976244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:4976244C>T	uc010qyt.1	-	1	700	c.700G>A	c.(700-702)GAG>AAG	p.E234K		NM_001004748	NP_001004748	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTAAGCTCCTCCTTTTTGGAT	0.478													25	5					0	0	0.108266	0	0
OR51A2	401667	broad.mit.edu	37	11	4976408	4976408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:4976408G>A	uc010qyt.1	-	1	536	c.536C>T	c.(535-537)TCC>TTC	p.S179F		NM_001004748	NP_001004748	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GAGACAGTAGGAATGGGATAA	0.408													55	111					0	0	0.048971	0	0
OR51A2	401667	broad.mit.edu	37	11	4976899	4976899	+	Silent	SNP	G	A	A	rs143598087		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:4976899G>A	uc010qyt.1	-	1	45	c.45C>T	c.(43-45)TTC>TTT	p.F15F		NM_001004748	NP_001004748	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A,	15	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCCCAACCAAGAAGAAGGTGG	0.413													26	40					0	0	0.054565	0	0
OR51Q1	390061	broad.mit.edu	37	11	5444294	5444294	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:5444294G>A	uc010qzd.1	+	1	864	c.864G>A	c.(862-864)GTG>GTA	p.V288V	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CACCCCCGGTGATGAACCCCA	0.448													24	46					0	0	0.076483	0	0
OR10A6	390093	broad.mit.edu	37	11	7949948	7949948	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:7949948C>T	uc010rbh.1	-	1	262	c.262G>A	c.(262-264)GAA>AAA	p.E88K		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GTAGTTTTTTCAGTAGAGAGG	0.438													44	58					0	0	0.039052	0	0
SPON1	10418	broad.mit.edu	37	11	14287200	14287200	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:14287200G>A	uc001mle.2	+	17	2929	c.2391G>A	c.(2389-2391)AAG>AAA	p.K797K		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	797	TSP type-1 6.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		aagacaagaaggagatcagag	0.234													12	30					0	0	0.080935	0	0
USH1C	10083	broad.mit.edu	37	11	17548347	17548347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:17548347C>T	uc001mnf.2	-	7	641	c.532G>A	c.(532-534)GAG>AAG	p.E178K	USH1C_uc001mne.2_Missense_Mutation_p.E178K|USH1C_uc009yhb.2_Missense_Mutation_p.E178K|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Missense_Mutation_p.E142K	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	178					equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						GTGAGGGGCTCATCAGGAGAG	0.552													28	44					0	0	0.030593	0	0
GAS2	2620	broad.mit.edu	37	11	22777461	22777461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:22777461G>A	uc009yie.2	+	7	991	c.685G>A	c.(685-687)GGA>AGA	p.G229R	GAS2_uc001mqm.2_Missense_Mutation_p.G229R|GAS2_uc001mqn.2_RNA|GAS2_uc001mqo.2_Missense_Mutation_p.G229R	NM_001143830	NP_001137302	O43903	GAS2_HUMAN	growth arrest-specific 2	229	GAR.				cell cycle arrest|cellular component disassembly involved in apoptosis|regulation of cell shape	actin filament|cytosol|membrane				ovary(1)|skin(1)	2						GCTCTCCCAAGGAAGATACCG	0.408													15	30					0	0	0.033300	0	0
LUZP2	338645	broad.mit.edu	37	11	25100135	25100135	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:25100135G>A	uc001mqs.2	+	12	1206	c.972G>A	c.(970-972)GTG>GTA	p.V324V	LUZP2_uc009yif.2_Silent_p.V238V|LUZP2_uc009yig.2_Silent_p.V282V	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	324						extracellular region				ovary(1)|skin(1)	2						AATGTGAGGTGAAAAAAGCCC	0.338													28	64					0	0	0.045705	0	0
ANO3	63982	broad.mit.edu	37	11	26463504	26463504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:26463504C>T	uc001mqt.3	+	2	231	c.86C>T	c.(85-87)TCG>TTG	p.S29L	ANO3_uc010rdr.1_Missense_Mutation_p.S13L	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	29	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AAAGAAACTTCGTTAAAACCG	0.413													49	100					0	0	0.048971	0	0
SLC5A12	159963	broad.mit.edu	37	11	26720049	26720049	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:26720049G>A	uc001mra.2	-	7	1168	c.855C>T	c.(853-855)ATC>ATT	p.I285I	SLC5A12_uc001mrb.2_RNA|SLC5A12_uc001mrc.3_Silent_p.I285I	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	285	Helical; (Potential).			I -> V (in Ref. 2; AAQ73572).	sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						ACACCAGAATGATCCAGAGAC	0.453													28	50					0	0	0.034045	0	0
LGR4	55366	broad.mit.edu	37	11	27400305	27400305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:27400305C>T	uc001mrj.3	-	11	1467	c.982G>A	c.(982-984)GGT>AGT	p.G328S	LGR4_uc001mrk.3_Missense_Mutation_p.G304S	NM_018490	NP_060960	Q9BXB1	LGR4_HUMAN	leucine-rich repeat-containing G protein-coupled	328	Extracellular (Potential).|LRR 11.					integral to membrane|plasma membrane	protein-hormone receptor activity			ovary(1)	1						ATCTTTGTACCTGTCAAAGTC	0.333													27	60					0	0	0.108266	0	0
KIF18A	81930	broad.mit.edu	37	11	28090911	28090911	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:28090911C>T	uc001msc.2	-	11	1667	c.1485G>A	c.(1483-1485)GAG>GAA	p.E495E		NM_031217	NP_112494	Q8NI77	KI18A_HUMAN	kinesin family member 18A	495					blood coagulation|microtubule depolymerization|microtubule-based movement|mitotic metaphase plate congression|mitotic prometaphase|protein transport	caveola|cytosol|kinetochore microtubule|microtubule organizing center|nucleus|ruffle	actin binding|ATP binding|microtubule plus-end binding|plus-end-directed microtubule motor activity|tubulin-dependent ATPase activity|ubiquitin binding			ovary(2)	2						CCCTCCTTTTCTCCAGGTAGG	0.388													30	43					0	0	0.034045	0	0
C11orf41	25758	broad.mit.edu	37	11	33565160	33565160	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:33565160T>A	uc001mup.3	+	1	1284	c.1160T>A	c.(1159-1161)ATA>AAA	p.I387K	C11orf41_uc001mun.1_Missense_Mutation_p.I387K	NM_012194	NP_036326	Q6ZVL6	CK041_HUMAN	hypothetical protein LOC25758	387						integral to membrane				ovary(2)	2						TCCTTAACAATAGGAGACATG	0.458											OREG0020868	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	37					0	0	0.043863	0	0
PAMR1	25891	broad.mit.edu	37	11	35454302	35454302	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:35454302T>C	uc001mwg.2	-	11	1808	c.1765A>G	c.(1765-1767)ACT>GCT	p.T589A	PAMR1_uc001mwf.2_Missense_Mutation_p.T606A|PAMR1_uc010rew.1_Missense_Mutation_p.T478A|PAMR1_uc010rex.1_Missense_Mutation_p.T549A	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	589	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						TGGAAGGAAGTGCTGAGATCC	0.602													26	32					0	0	0.034045	0	0
TRAF6	7189	broad.mit.edu	37	11	36516595	36516595	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:36516595G>A	uc001mwr.1	-	6	949	c.609C>T	c.(607-609)ATC>ATT	p.I203I	TRAF6_uc001mws.1_Silent_p.I203I	NM_145803	NP_665802	Q9Y4K3	TRAF6_HUMAN	TNF receptor-associated factor 6	203	Interaction with TAX1BP1.|TRAF-type 2.				activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|ossification|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of osteoclast differentiation|positive regulation of T cell cytokine production|protein autoubiquitination|protein K63-linked ubiquitination|response to interleukin-1|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cell cortex|cytosol|endosome membrane|internal side of plasma membrane|nuclear membrane	histone deacetylase binding|mitogen-activated protein kinase kinase kinase binding|protein kinase B binding|protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1	all_lung(20;0.211)	all_hematologic(20;0.107)				TCTGGTCATGGATCTGAATTT	0.264													18	49					0	0	0.055883	0	0
RAG2	5897	broad.mit.edu	37	11	36615100	36615100	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:36615100G>A	uc001mwv.3	-	2	807	c.619C>T	c.(619-621)CAT>TAT	p.H207Y	C11orf74_uc010rfd.1_5'Flank|C11orf74_uc001mww.1_5'Flank|C11orf74_uc001mwx.1_5'Flank|C11orf74_uc001mwy.1_5'Flank|C11orf74_uc001mwz.1_5'Flank|C11orf74_uc010rfe.1_5'Flank	NM_000536	NP_000527	P55895	RAG2_HUMAN	recombination activating gene 2	207					chromatin modification|pre-B cell allelic exclusion|somatic diversification of immunoglobulins|T cell differentiation in thymus|V(D)J recombination	nucleus	chromatin binding|DNA binding|endonuclease activity|methylated histone residue binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|zinc ion binding			skin(3)|ovary(1)|pancreas(1)	5	all_lung(20;0.226)	all_hematologic(20;0.00756)				ATAGAGACATGAAAAGATAGC	0.423									Familial_Hemophagocytic_Lymphohistiocytosis				37	66					0	0	0.080422	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136339	40136339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:40136339C>T	uc001mxa.1	-	2	3468	c.1504G>A	c.(1504-1506)GAG>AAG	p.E502K	LRRC4C_uc001mxc.1_Missense_Mutation_p.E498K|LRRC4C_uc001mxd.1_Missense_Mutation_p.E498K|LRRC4C_uc001mxb.1_Missense_Mutation_p.E498K	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	502					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				AAGGTTTTCTCTGTCGACCTT	0.502													28	45					0	0	0.034045	0	0
HSD17B12	51144	broad.mit.edu	37	11	43861552	43861552	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:43861552T>C	uc001mxq.3	+	9	857	c.622T>C	c.(622-624)TTT>CTT	p.F208L		NM_016142	NP_057226	Q53GQ0	DHB12_HUMAN	hydroxysteroid (17-beta) dehydrogenase 12	208					long-chain fatty-acyl-CoA biosynthetic process|steroid biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	estradiol 17-beta-dehydrogenase activity|long-chain-3-hydroxyacyl-CoA dehydrogenase activity				0						CTCCCAGACTTTTGTAGATTT	0.408													35	58					0	0	0.069456	0	0
AMBRA1	55626	broad.mit.edu	37	11	46564131	46564131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:46564131G>A	uc010rgu.1	-	7	1796	c.1436C>T	c.(1435-1437)ACT>ATT	p.T479I	AMBRA1_uc010rgt.1_Missense_Mutation_p.T45I|AMBRA1_uc009ylc.1_Missense_Mutation_p.T479I|AMBRA1_uc001ncu.1_Missense_Mutation_p.T389I|AMBRA1_uc001ncv.2_Missense_Mutation_p.T389I|AMBRA1_uc001ncw.2_Missense_Mutation_p.T389I|AMBRA1_uc001ncx.2_Missense_Mutation_p.T479I	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	479					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		ATCTGACTCAGTTGCCAACCC	0.547													49	74					0	0	0.048971	0	0
LRP4	4038	broad.mit.edu	37	11	46914568	46914568	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:46914568C>T	uc001ndn.3	-	13	1799	c.1653G>A	c.(1651-1653)CAG>CAA	p.Q551Q		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	551	Extracellular (Potential).|LDL-receptor class B 2.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		TCTCCAGGTTCTGCCACAGCA	0.577													9	22					0	0	0.028581	0	0
OR4C12	283093	broad.mit.edu	37	11	50003287	50003287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:50003287G>A	uc010ria.1	-	1	751	c.751C>T	c.(751-753)CCC>TCC	p.P251S		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						AATATACAGGGCACAAAGAAT	0.418													20	25					0	0	0.055883	0	0
OR4A16	81327	broad.mit.edu	37	11	55110948	55110948	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:55110948C>T	uc010rie.1	+	1	272	c.272C>T	c.(271-273)TCC>TTC	p.S91F		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						ATCGCTATTTCCTTGTCAGCT	0.438													80	119					0	0	0.048971	0	0
OR4C15	81309	broad.mit.edu	37	11	55322011	55322011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:55322011G>A	uc010rig.1	+	1	229	c.229G>A	c.(229-231)GAA>AAA	p.E77K		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AAATGTTCAGGAAATAGTATT	0.418										HNSCC(20;0.049)			55	106					0	0	0.048971	0	0
OR5D13	390142	broad.mit.edu	37	11	55541093	55541093	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:55541093C>T	uc010ril.1	+	1	180	c.180C>T	c.(178-180)ATC>ATT	p.I60I		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				TCCATACAATCATGTGCTTTT	0.398													17	90					0	0	0.043863	0	0
OR7E5P	219445	broad.mit.edu	37	11	55747337	55747337	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:55747337G>A	uc010riu.1	-	4	675	c.120C>T	c.(118-120)TTC>TTT	p.F40F		NR_027688				SubName: Full=HCG2036849; SubName: Full=Seven transmembrane helix receptor;												0						TGGCCGAGGTGAAACCGATGT	0.537													9	10					0	0	0.058154	0	0
OR8H1	219469	broad.mit.edu	37	11	56058443	56058443	+	Silent	SNP	G	A	A	rs141901122		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:56058443G>A	uc010rje.1	-	1	96	c.96C>T	c.(94-96)CTC>CTT	p.L32L		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					GGTATATCAGGAGAAATAGTA	0.428													40	99					0	0	0.080422	0	0
OR5M11	219487	broad.mit.edu	37	11	56309983	56309983	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:56309983A>G	uc010rjl.1	-	1	751	c.751T>C	c.(751-753)TAT>CAT	p.Y251H		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGAGTCCCATAAAACAGGGTG	0.448													38	59					0	0	0.111260	0	0
APLNR	187	broad.mit.edu	37	11	57003474	57003474	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:57003474G>A	uc001njo.2	-	1	1454	c.1005C>T	c.(1003-1005)TCC>TCT	p.S335S	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	335	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						TGCTGCTGTGGGAGGTGCCTG	0.637													25	48					0	0	0.091800	0	0
OR9I1	219954	broad.mit.edu	37	11	57886568	57886568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:57886568C>T	uc001nml.1	-	1	349	c.349G>A	c.(349-351)GTG>ATG	p.V117M	OR9Q1_uc001nmj.2_Intron	NM_001005211	NP_001005211	Q8NGQ6	OR9I1_HUMAN	olfactory receptor, family 9, subfamily I,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Breast(21;0.0589)				TAGGCCATCACTGCCAGCAGA	0.547													22	39					0	0	0.055883	0	0
OR5B21	219968	broad.mit.edu	37	11	58275359	58275359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:58275359C>T	uc010rki.1	-	1	220	c.220G>A	c.(220-222)GCT>ACT	p.A74T		NM_001005218	NP_001005218	A6NL26	OR5BL_HUMAN	olfactory receptor, family 5, subfamily B,	74	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GGGGCTACAGCTGATGAGTAA	0.517													29	43					0	0	0.034045	0	0
OR5A1	219982	broad.mit.edu	37	11	59211401	59211401	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:59211401C>T	uc001nnx.1	+	1	760	c.760C>T	c.(760-762)CTG>TTG	p.L254L		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	254	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						GGTGACTCTGCTGTTTGGGAC	0.532													93	134					0	0	0.048971	0	0
GIF	2694	broad.mit.edu	37	11	59604762	59604762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:59604762C>T	uc001noi.2	-	6	804	c.756G>A	c.(754-756)ATG>ATA	p.M252I		NM_005142	NP_005133	P27352	IF_HUMAN	gastric intrinsic factor (vitamin B synthesis)	252					cobalamin metabolic process|cobalamin transport|cobalt ion transport	apical plasma membrane|endosome|extracellular space|microvillus	cobalamin binding			ovary(1)|liver(1)	2						CATTGAGTATCATATCCGTAG	0.453													26	45					0	0	0.083992	0	0
SLC15A3	51296	broad.mit.edu	37	11	60704797	60704797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:60704797C>T	uc001nqn.2	-	8	1874	c.1640G>A	c.(1639-1641)GGC>GAC	p.G547D	SLC15A3_uc001nqo.2_3'UTR	NM_016582	NP_057666	Q8IY34	S15A3_HUMAN	solute carrier family 15, member 3	547	Helical; (Potential).				oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0						GGCCTGAATGCCAGCCAGCAG	0.587													38	64					0	0	0.104719	0	0
CD6	923	broad.mit.edu	37	11	60777182	60777182	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:60777182G>A	uc001nqq.2	+	5	1143	c.920G>A	c.(919-921)GGC>GAC	p.G307D	CD6_uc009yni.2_Intron|CD6_uc009ynj.2_Intron|CD6_uc001nqp.2_Missense_Mutation_p.G307D|CD6_uc001nqr.2_Missense_Mutation_p.G307D|CD6_uc001nqs.2_RNA|CD6_uc001nqt.2_Missense_Mutation_p.G307D	NM_006725	NP_006716	P30203	CD6_HUMAN	CD6 molecule precursor	307	SRCR 3.|Extracellular (Potential).				cell adhesion	cell surface|integral to plasma membrane	scavenger receptor activity			pancreas(1)	1						CAGTCCTTGGGCTGTGGAACT	0.612													22	41					0	0	0.062417	0	0
RTN3	10313	broad.mit.edu	37	11	63486450	63486450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:63486450C>T	uc001nxq.2	+	3	663	c.476C>T	c.(475-477)CCA>CTA	p.P159L	RTN3_uc001nxo.2_Intron|RTN3_uc001nxm.2_Intron|RTN3_uc001nxn.2_Missense_Mutation_p.P140L|RTN3_uc001nxp.2_Intron|RTN3_uc009yov.2_Intron|RTN3_uc010rmt.1_Intron|RTN3_uc010rmu.1_Intron	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	159					apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						CCTTCTATTCCAGCCAGTTTC	0.438													37	64					0	0	0.074837	0	0
FLRT1	23769	broad.mit.edu	37	11	63885726	63885726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:63885726G>A	uc001nyi.1	+	2	2328	c.1987G>A	c.(1987-1989)GAC>AAC	p.D663N	MACROD1_uc001nyh.2_Intron	NM_013280	NP_037412	Q9NZU1	FLRT1_HUMAN	fibronectin leucine rich transmembrane protein	635	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity				0						GGGCTACCGGGACGGCGGCAT	0.647													29	35					0	0	0.045705	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64597720	64597720	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:64597720G>A	uc001obs.3	-	29	3313	c.3313C>T	c.(3313-3315)CGA>TGA	p.R1105*		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	1105	CNH.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						AGCGCAAGTCGATCctggtct	0.328													14	9					0	0	0.020292	0	0
ATG2A	23130	broad.mit.edu	37	11	64677578	64677579	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:64677578_64677579GG>AA	uc001obx.2	-	13	1911_1912	c.1796_1797CC>TT	c.(1795-1797)GCC>GTT	p.A599V		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	599							protein binding			ovary(1)|central_nervous_system(1)	2						GCCGGTCCAGGGCCCCCAGCTC	0.728													13	24					0	0	0.004672	0	0
ACTN3	89	broad.mit.edu	37	11	66322819	66322819	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:66322819C>T	uc001oio.1	+	7	717	c.699C>T	c.(697-699)CCC>CCT	p.P233P	ACTN3_uc010rpi.1_RNA	NM_001104	NP_001095	Q08043	ACTN3_HUMAN	actinin, alpha 3	233	Actin-binding.|CH 2.				focal adhesion assembly|muscle filament sliding|regulation of apoptosis	actin filament|cytosol|focal adhesion|pseudopodium	actin binding|calcium ion binding|integrin binding|protein homodimerization activity|structural constituent of muscle				0						TGGACATCCCCAAGATGTTGG	0.557													37	76					0	0	0.086207	0	0
PC	5091	broad.mit.edu	37	11	66639329	66639329	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:66639329G>A	uc001ojn.1	-	3	199	c.150C>T	c.(148-150)ATC>ATT	p.I50I	PC_uc001ojo.1_Silent_p.I50I|PC_uc001ojp.1_Silent_p.I50I	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	50	Biotin carboxylation.				gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	GGAACACACGGATGGCAATCT	0.582													6	15					0	0	0.029380	0	0
ATG16L2	89849	broad.mit.edu	37	11	72539461	72539461	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:72539461C>T	uc001otd.2	+	15	1570	c.1530C>T	c.(1528-1530)CTC>CTT	p.L510L	ATG16L2_uc001ote.2_Silent_p.L404L|ATG16L2_uc009ytj.1_Nonsense_Mutation_p.Q126*|ATG16L2_uc001otf.2_Silent_p.L265L|ATG16L2_uc001otg.2_Silent_p.L244L|ATG16L2_uc009ytk.2_Silent_p.L265L	NM_033388	NP_203746	Q8NAA4	A16L2_HUMAN	ATG16 autophagy related 16-like 2	510	WD 5.				autophagy|protein transport	cytoplasm	protein binding				0			BRCA - Breast invasive adenocarcinoma(5;2.73e-06)			CCCTGAGCCTCAGCCACGACC	0.617													182	346					0	0	0.048971	0	0
ODZ4	26011	broad.mit.edu	37	11	78387364	78387364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:78387364C>T	uc001ozl.3	-	30	5792	c.5329G>A	c.(5329-5331)GAG>AAG	p.E1777K	ODZ4_uc001ozk.3_Missense_Mutation_p.E2K|ODZ4_uc009yvb.1_Missense_Mutation_p.E361K	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1777	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						AGCGCCACCTCCATGCCGTTG	0.627													15	30					0	0	0.033300	0	0
FAT3	120114	broad.mit.edu	37	11	92086741	92086741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:92086741G>A	uc001pdj.3	+	1	1480	c.1463G>A	c.(1462-1464)GGA>GAA	p.G488E		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	488	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTCCCAGTGGGAACCAGCGTT	0.418										TCGA Ovarian(4;0.039)			229	371					0	0	0.048971	0	0
FAT3	120114	broad.mit.edu	37	11	92086899	92086899	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:92086899G>A	uc001pdj.3	+	1	1638	c.1621G>A	c.(1621-1623)GAA>AAA	p.E541K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	541	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATCCTCCCCAGAAATTTACAG	0.398										TCGA Ovarian(4;0.039)			271	473					0	0	0.048971	0	0
FAT3	120114	broad.mit.edu	37	11	92534379	92534379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:92534379C>T	uc001pdj.3	+	9	8217	c.8200C>T	c.(8200-8202)CCC>TCC	p.P2734S		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2734	Extracellular (Potential).|Cadherin 25.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GAGGATTTTGCCCAGTCAGAA	0.463										TCGA Ovarian(4;0.039)			8	795					0	0	0.047766	0	0
FAT3	120114	broad.mit.edu	37	11	92568068	92568068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:92568068G>A	uc001pdj.3	+	14	9921	c.9904G>A	c.(9904-9906)GAA>AAA	p.E3302K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3302	Cadherin 30.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCTGGACTATGAATTATGCAA	0.428										TCGA Ovarian(4;0.039)			266	432					0	0	0.048971	0	0
CNTN5	53942	broad.mit.edu	37	11	99872807	99872807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:99872807C>T	uc001pga.2	+	9	1258	c.919C>T	c.(919-921)CCT>TCT	p.P307S	CNTN5_uc009ywv.1_Missense_Mutation_p.P307S|CNTN5_uc001pfz.2_Missense_Mutation_p.P307S|CNTN5_uc001pgb.2_Missense_Mutation_p.P233S	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	307	Ig-like C2-type 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		GGTCCATTTTCCTTTCACGGT	0.338													20	5					0	0	0.083992	0	0
CNTN5	53942	broad.mit.edu	37	11	100061937	100061937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:100061937G>A	uc001pga.2	+	14	1999	c.1660G>A	c.(1660-1662)GAA>AAA	p.E554K	CNTN5_uc009ywv.1_Missense_Mutation_p.E554K|CNTN5_uc001pfz.2_Missense_Mutation_p.E554K|CNTN5_uc001pgb.2_Missense_Mutation_p.E480K|CNTN5_uc010ruk.1_5'UTR	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	554	Ig-like C2-type 5.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TTGCCGAGGGGAAAACGTCTT	0.408													17	26					0	0	0.038395	0	0
TTC12	54970	broad.mit.edu	37	11	113235695	113235695	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:113235695T>C	uc001pnu.2	+	21	2060	c.1955T>C	c.(1954-1956)TTA>TCA	p.L652S	TTC12_uc001pnv.2_Missense_Mutation_p.L658S|TTC12_uc001pnw.2_RNA|TTC12_uc001pnx.2_Missense_Mutation_p.L502S	NM_017868	NP_060338	Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12	652							binding			pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		CAGGTCTTGTTAAAGCTTGCA	0.577													19	37					0	0	0.043863	0	0
DRD2	1813	broad.mit.edu	37	11	113281476	113281476	+	Silent	SNP	C	T	T	rs77930100	byFrequency	TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:113281476C>T	uc001pnz.2	-	7	1626	c.1305G>A	c.(1303-1305)AAG>AAA	p.K435K	DRD2_uc010rwv.1_Silent_p.K434K|DRD2_uc001poa.3_Silent_p.K435K|DRD2_uc001pob.3_Silent_p.K406K	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	435	Cytoplasmic (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	TCAGGAAGGCCTTGCGGAACT	0.617													52	122					0	0	0.048971	0	0
TMPRSS13	84000	broad.mit.edu	37	11	117789285	117789285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:117789285G>A	uc001prs.1	-	2	383	c.290C>T	c.(289-291)TCC>TTC	p.S97F	TMPRSS13_uc009yzr.1_5'UTR|TMPRSS13_uc001prt.1_5'UTR|TMPRSS13_uc001pru.1_Missense_Mutation_p.S97F	NM_001077263	NP_001070731	Q9BYE2	TMPSD_HUMAN	transmembrane protease, serine 13	92	Cytoplasmic (Potential).				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			pancreas(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.00106)		TGAGGACCTGGAAAGTGATGC	0.632													11	49					0	0	0.093190	0	0
GRIK4	2900	broad.mit.edu	37	11	120852850	120852850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:120852850G>A	uc001pxn.2	+	20	2718	c.2431G>A	c.(2431-2433)GTT>ATT	p.V811I	GRIK4_uc009zaw.1_Missense_Mutation_p.V811I|GRIK4_uc009zax.1_Missense_Mutation_p.V811I	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	811	Helical; (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	AATCTTTGTGGTTCTTATTTG	0.368													81	109					0	0	0.048971	0	0
C11orf63	79864	broad.mit.edu	37	11	122805710	122805710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:122805710G>A	uc001pym.2	+	5	1858	c.1561G>A	c.(1561-1563)GGA>AGA	p.G521R		NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	521										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		AAATACTCATGGATCAACCAA	0.363													43	49					0	0	0.104719	0	0
OR10G4	390264	broad.mit.edu	37	11	123887023	123887023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:123887023C>T	uc010sac.1	+	1	742	c.742C>T	c.(742-744)CTT>TTT	p.L248F		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		TATTGTGGTCCTTTGCTTCTT	0.542													22	37					0	0	0.062417	0	0
NTM	50863	broad.mit.edu	37	11	132180060	132180060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:132180060G>A	uc001qgp.2	+	5	1380	c.716G>A	c.(715-717)GGG>GAG	p.G239E	NTM_uc001qgm.2_Missense_Mutation_p.G239E|NTM_uc010sch.1_Missense_Mutation_p.G230E|NTM_uc010sci.1_Missense_Mutation_p.G239E|NTM_uc010scj.1_Missense_Mutation_p.G198E|NTM_uc001qgo.2_Missense_Mutation_p.G239E|NTM_uc001qgq.2_Missense_Mutation_p.G239E|NTM_uc001qgr.2_5'UTR	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	239	Ig-like C2-type 3.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						GGACAAAAGGGGACACTGCAG	0.502													61	144					0	0	0.048971	0	0
IQSEC3	440073	broad.mit.edu	37	12	283825	283825	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:283825G>A	uc001qhw.1	+	11	2272	c.2266G>A	c.(2266-2268)GGA>AGA	p.G756R		NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	1059					regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		GGCCGAGAGGGGAGCGCCGGT	0.647													7	12					0	0	0.029380	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1983818	1983818	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:1983818C>T	uc001qjp.2	-	18	2061	c.1830G>A	c.(1828-1830)AGG>AGA	p.R610R	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Intron	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	610	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		TACCTGTTTCCCTATTGATCA	0.473													5	34					0	0	0.021553	0	0
ANO2	57101	broad.mit.edu	37	12	5672545	5672545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:5672545G>A	uc001qnm.2	-	26	2989	c.2917C>T	c.(2917-2919)CGG>TGG	p.R973W		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	978	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						CTGGCTGCCCGGCTCCTGCTT	0.572													4	4					0	0	0.009096	0	0
VWF	7450	broad.mit.edu	37	12	6230460	6230461	+	Nonsense_Mutation	DNP	GG	AA	AA	rs61753984		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:6230460_6230461GG>AA	uc001qnn.1	-	3	349_350	c.99_100CC>TT	c.(97-102)GCCCGA>GCTTGA	p.R34*	VWF_uc010set.1_Nonsense_Mutation_p.R34*|VWF_uc001qno.1_Nonsense_Mutation_p.R71*	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	34	VWFD 1.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	AGGCTGCATCGGGCCGTGGATG	0.584													8	29					0	0	0.004672	0	0
PEX5	5830	broad.mit.edu	37	12	7362645	7362646	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:7362645_7362646CC>TT	uc009zfu.1	+	17	2326_2327	c.1746_1747CC>TT	c.(1744-1749)GCCCTG>GCTTTG	p.582_583AL>AL	PEX5_uc001qsw.2_Silent_p.582_583AL>AL|PEX5_uc010sgc.1_Silent_p.597_598AL>AL|PEX5_uc001qsu.2_Silent_p.545_546AL>AL|PEX5_uc010sgd.1_Silent_p.603_604AL>AL|PEX5_uc001qsv.2_Silent_p.574_575AL>AL	NM_001131026	NP_001124498	P50542	PEX5_HUMAN	peroxisomal biogenesis factor 5 isoform d	582_583	TPR 7.				protein import into peroxisome matrix, translocation|protein targeting to peroxisome|protein tetramerization|protein transport	cytosol|peroxisomal matrix|peroxisomal membrane	peroxisome matrix targeting signal-1 binding|protein C-terminus binding|protein N-terminus binding			ovary(1)	1						TTCTGGAGGCCCTGAACATGCA	0.554													6	32					0	0	0.004672	0	0
LOC642846	642846	broad.mit.edu	37	12	9447432	9447432	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:9447432C>G	uc010sgq.1	+	5	513	c.422C>G	c.(421-423)ACA>AGA	p.T141R	LOC642846_uc010sgp.1_RNA|LOC642846_uc009zgn.1_5'UTR|LOC642846_uc001qvo.2_5'UTR					SubName: Full=cDNA FLJ60032, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-);												0						GAAGAAGAAACAGAGAATCTC	0.632													2	7					0	0	0.021553	0	0
C12orf59	120939	broad.mit.edu	37	12	10339129	10339129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:10339129C>T	uc001qxr.2	+	4	865	c.248C>T	c.(247-249)CCC>CTC	p.P83L	C12orf59_uc001qxq.2_Missense_Mutation_p.P63L			Q4KMG9	CL059_HUMAN	RecName: Full=Uncharacterized protein C12orf59; Flags: Precursor;	83						integral to membrane				ovary(1)	1						GGCCCACCACCCTGTGAAGTG	0.557													21	66					0	0	0.076483	0	0
TAS2R10	50839	broad.mit.edu	37	12	10978578	10978578	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:10978578C>T	uc001qyy.1	-	1	291	c.291G>A	c.(289-291)TGG>TGA	p.W97*		NM_023921	NP_076410	Q9NYW0	T2R10_HUMAN	taste receptor, type 2, member 10	97	Extracellular (Potential).				sensory perception of taste	integral to membrane	taste receptor activity				0						TGGTGGCAAACCACATACTTG	0.348													30	38					0	0	0.050027	0	0
CDKN1B	1027	broad.mit.edu	37	12	12870980	12870980	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:12870980C>T	uc001rat.2	+	1	679	c.207C>T	c.(205-207)CCC>CCT	p.P69P		NM_004064	NP_004055	P46527	CDN1B_HUMAN	cyclin-dependent kinase inhibitor 1B	69			P -> L (found in a patient with multiple endocrine tumors; germline mutation; reduced expression levels; shows impaired binding to CDK2).		autophagic cell death|cell cycle arrest|cellular response to lithium ion|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of protein catabolic process|S phase of mitotic cell cycle	cytosol|endosome|nucleoplasm	cyclin-dependent protein kinase inhibitor activity|protein phosphatase binding|transforming growth factor beta receptor, cytoplasmic mediator activity			ovary(1)|lung(1)	2		Prostate(47;0.0322)|all_epithelial(100;0.159)		BRCA - Breast invasive adenocarcinoma(232;0.0336)		ATCACAAACCCCTAGAGGGCA	0.577									Multiple_Endocrine_Neoplasia_type_1|Multiple_Endocrine_Neoplasia_type_4				29	79					0	0	0.037714	0	0
ARHGDIB	397	broad.mit.edu	37	12	15095556	15095556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:15095556C>T	uc001rcq.1	-	6	610	c.506G>A	c.(505-507)CGA>CAA	p.R169Q	ARHGDIB_uc001rcp.1_RNA	NM_001175	NP_001166	P52566	GDIR2_HUMAN	Rho GDP dissociation inhibitor (GDI) beta	169				RG -> QD (in Ref. 3; L07916).	actin cytoskeleton organization|cellular component movement|immune response|multicellular organismal development|negative regulation of cell adhesion|regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytoplasmic membrane-bounded vesicle|cytoskeleton|cytosol	GTPase activator activity|Rho GDP-dissociation inhibitor activity				0						GTACGTGCCTCGCGCCAGCAT	0.532													39	83					0	0	0.098360	0	0
RERGL	79785	broad.mit.edu	37	12	18234147	18234147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:18234147C>T	uc001rdq.2	-	6	790	c.596G>A	c.(595-597)GGA>GAA	p.G199E	RERGL_uc001rdr.2_Missense_Mutation_p.G198E	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	199	Small GTPase-like.				signal transduction	membrane	GTP binding|GTPase activity				0						CCTTCTCTTTCCAAATACATT	0.338													4	21					0	0	0.014758	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21450448	21450448	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:21450448A>G	uc001rer.2	-	8	1216	c.965T>C	c.(964-966)ATA>ACA	p.I322T	SLCO1A2_uc001res.2_Missense_Mutation_p.I322T|SLCO1A2_uc010siq.1_Missense_Mutation_p.I190T|SLCO1A2_uc010sio.1_Missense_Mutation_p.I190T|SLCO1A2_uc010sip.1_Missense_Mutation_p.I190T|SLCO1A2_uc001ret.2_Missense_Mutation_p.I320T|SLCO1A2_uc001reu.2_Missense_Mutation_p.I302T	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	322	Helical; Name=7; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						ACTTACAAGTATGAAAAGCAT	0.348													8	34					0	0	0.058154	0	0
ABCC9	10060	broad.mit.edu	37	12	21962820	21962820	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:21962820C>T	uc001rfi.1	-	35	4301	c.4281G>A	c.(4279-4281)CTG>CTA	p.L1427L	ABCC9_uc001rfh.2_Silent_p.L1427L|ABCC9_uc001rfj.1_Silent_p.L1391L|ABCC9_uc001rfg.2_5'Flank	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1427	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CCATATTCTTCAGCTGAGCAA	0.333													38	26					0	0	0.042209	0	0
IPO8	10526	broad.mit.edu	37	12	30790082	30790082	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:30790082G>A	uc001rjd.2	-	22	2699	c.2529C>T	c.(2527-2529)ATC>ATT	p.I843I	IPO8_uc001rje.1_Silent_p.I332I|IPO8_uc010sjt.1_Silent_p.I638I	NM_006390	NP_006381	O15397	IPO8_HUMAN	importin 8	843					intracellular protein transport|signal transduction	cytoplasm|nucleus	protein transporter activity|Ran GTPase binding			skin(2)|central_nervous_system(1)	3	all_lung(12;6.66e-10)|Lung NSC(12;4.84e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					ATTCCAAAAGGATACTCAGTC	0.398													38	26					0	0	0.111260	0	0
SYT10	341359	broad.mit.edu	37	12	33579337	33579337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:33579337G>A	uc001rll.1	-	2	542	c.245C>T	c.(244-246)CCA>CTA	p.P82L	SYT10_uc009zju.1_5'UTR	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	82	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					TTTCCAGCATGGCCAACACAG	0.438													4	21					0	0	0.009096	0	0
ANP32D	23519	broad.mit.edu	37	12	48866489	48866489	+	Silent	SNP	G	A	A	rs150593500	byFrequency	TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:48866489G>A	uc010slt.1	+	1	42	c.42G>A	c.(40-42)AGG>AGA	p.R14R		NM_012404	NP_036536	O95626	AN32D_HUMAN	acidic nuclear phosphoprotein 32D	14										ovary(1)|central_nervous_system(1)	2						TGCGGAACAGGACGCCCTCCG	0.463													15	67					0	0	0.024245	0	0
LARP4	113251	broad.mit.edu	37	12	50848199	50848199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:50848199C>T	uc001rwp.1	+	10	1264	c.1120C>T	c.(1120-1122)CGT>TGT	p.R374C	LARP4_uc001rwo.1_Missense_Mutation_p.R380C|LARP4_uc001rwq.1_Missense_Mutation_p.R303C|LARP4_uc001rwr.1_Missense_Mutation_p.R374W|LARP4_uc001rws.1_Missense_Mutation_p.R373C|LARP4_uc009zlr.1_Missense_Mutation_p.R193C|LARP4_uc001rwt.1_Missense_Mutation_p.R36W|LARP4_uc001rwm.2_Missense_Mutation_p.R374C|LARP4_uc001rwn.2_Missense_Mutation_p.R304C	NM_052879	NP_443111	Q71RC2	LARP4_HUMAN	c-Mpl binding protein isoform a	374							nucleotide binding|RNA binding			ovary(1)	1						CCAAAAAAATCGGTAAGATAA	0.348													10	24					0	0	0.069234	0	0
KRT84	3890	broad.mit.edu	37	12	52779113	52779113	+	Missense_Mutation	SNP	C	T	T	rs145766018	byFrequency	TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:52779113C>T	uc001sah.1	-	1	305	c.257G>A	c.(256-258)GGT>GAT	p.G86D		NM_033045	NP_149034	Q9NSB2	KRT84_HUMAN	keratin, hair, basic, 4	86	Head.					keratin filament	structural constituent of epidermis			skin(1)	1	all_hematologic(5;0.12)			BRCA - Breast invasive adenocarcinoma(357;0.189)		ATCACCAAAACCCATCCCACA	0.592													45	49					0	0	0.048971	0	0
ITGA5	3678	broad.mit.edu	37	12	54795612	54795612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:54795612G>A	uc001sga.2	-	22	2322	c.2254C>T	c.(2254-2256)CCT>TCT	p.P752S		NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	752	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						CGGAGATGAGGGACTGTAAAC	0.552													16	20					0	0	0.049695	0	0
SMARCC2	6601	broad.mit.edu	37	12	56563979	56563979	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:56563979A>C	uc001skb.2	-	22	2374	c.2268T>G	c.(2266-2268)AAT>AAG	p.N756K	SMARCC2_uc001skd.2_Missense_Mutation_p.N787K|SMARCC2_uc001ska.2_Missense_Mutation_p.N787K|SMARCC2_uc001skc.2_Missense_Mutation_p.N786K|SMARCC2_uc010sqf.1_Missense_Mutation_p.N676K	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	756	Glu-rich.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			GAGCCTCGTCATTCCCGCTCT	0.468													22	36					0	0	0.108266	0	0
SLC39A5	283375	broad.mit.edu	37	12	56625337	56625337	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:56625337C>T	uc010sqj.1	+	4	536	c.279C>T	c.(277-279)TCC>TCT	p.S93S	SLC39A5_uc010sqi.1_5'UTR|SLC39A5_uc010sqk.1_Silent_p.S93S	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	93	Extracellular (By similarity).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						CAGACAATTCCACACACAGGT	0.627													29	51					0	0	0.034045	0	0
BAZ2A	11176	broad.mit.edu	37	12	56992444	56992444	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:56992444G>A	uc001slq.1	-	29	5870	c.5676C>T	c.(5674-5676)AGC>AGT	p.S1892S	BAZ2A_uc001slp.1_Silent_p.S1890S|BAZ2A_uc001slo.1_Silent_p.S698S|BAZ2A_uc009zov.1_Silent_p.S858S|BAZ2A_uc009zow.1_Silent_p.S1860S	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	1892					chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						CCTCCCAGCGGCTCTCGAAGA	0.552													8	13					0	0	0.058154	0	0
LRP1	4035	broad.mit.edu	37	12	57552254	57552254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:57552254G>A	uc001snd.2	+	11	2097	c.1631G>A	c.(1630-1632)GGG>GAG	p.G544E		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	544	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	ATGGATATGGGGGCCAAGGTC	0.597													16	21					0	0	0.024245	0	0
LRP1	4035	broad.mit.edu	37	12	57579335	57579335	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:57579335C>T	uc001snd.2	+	41	6951	c.6485C>T	c.(6484-6486)GCC>GTC	p.A2162V		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2162	EGF-like 9.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	TGCGCGGTGGCCAATGGCGGG	0.692													8	26					0	0	0.069234	0	0
KIF5A	3798	broad.mit.edu	37	12	57972125	57972125	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:57972125G>A	uc001sor.1	+	23	2746	c.2538G>A	c.(2536-2538)CAG>CAA	p.Q846Q	KIF5A_uc010srr.1_Silent_p.Q757Q	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	846					blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						TTCACAAACAGGTAAGAGTCT	0.468													26	53					0	0	0.091800	0	0
KCNMB4	27345	broad.mit.edu	37	12	70824296	70824296	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:70824296G>A	uc001svx.2	+	3	949	c.496G>A	c.(496-498)GAT>AAT	p.D166N	uc001svy.1_5'Flank	NM_014505	NP_055320	Q86W47	KCMB4_HUMAN	calcium-activated potassium channel beta 4	166	Extracellular (Potential).				detection of calcium ion|platelet activation|regulation of action potential in neuron|regulation of neurotransmitter secretion|regulation of vasoconstriction|synaptic transmission	voltage-gated potassium channel complex	calcium-activated potassium channel activity|protein binding				0	Renal(347;0.236)		Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00243)|STAD - Stomach adenocarcinoma(21;0.0118)			TCGCACTCATGATGAGATTGT	0.493													36	120					0	0	0.069456	0	0
PTPRB	5787	broad.mit.edu	37	12	70946612	70946612	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:70946612C>T	uc001swb.3	-	19	4708	c.4678G>A	c.(4678-4680)GAT>AAT	p.D1560N	PTPRB_uc010sto.1_Missense_Mutation_p.D1470N|PTPRB_uc010stp.1_Missense_Mutation_p.D1470N|PTPRB_uc001swc.3_Missense_Mutation_p.D1778N|PTPRB_uc001swa.3_Missense_Mutation_p.D1690N	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1560	Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TGAGTGGGATCGCATTTTCCA	0.423													19	45					0	0	0.038395	0	0
TSPAN8	7103	broad.mit.edu	37	12	71537976	71537976	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:71537976G>A	uc009zrt.1	-	2	240	c.78C>T	c.(76-78)ATC>ATT	p.I26I	TSPAN8_uc001swk.1_Silent_p.I26I|TSPAN8_uc001swj.1_Silent_p.I26I	NM_004616	NP_004607	P19075	TSN8_HUMAN	transmembrane 4 superfamily member 3	26	Helical; (Potential).				protein glycosylation	integral to membrane|lysosome	signal transducer activity			skin(2)|lung(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(43;0.24)|OV - Ovarian serous cystadenocarcinoma(12;0.244)			CTAATGCTAGGATCAAGATAC	0.358													49	128					0	0	0.048971	0	0
TRHDE	29953	broad.mit.edu	37	12	73056945	73056945	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:73056945C>T	uc001sxa.2	+	19	3075	c.3045C>T	c.(3043-3045)TTC>TTT	p.F1015F		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	1015	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						ACGAGCTTTTCCAATGGTTAG	0.398													14	29					0	0	0.020292	0	0
NAV3	89795	broad.mit.edu	37	12	78513272	78513272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:78513272C>T	uc001syp.2	+	15	3469	c.3296C>T	c.(3295-3297)TCT>TTT	p.S1099F	NAV3_uc001syo.2_Missense_Mutation_p.S1099F|NAV3_uc010sub.1_Missense_Mutation_p.S599F|NAV3_uc009zsf.2_Missense_Mutation_p.S107F	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1099	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						ATTCCAAAATCTGCTGCCATT	0.473										HNSCC(70;0.22)			21	49					0	0	0.062417	0	0
NAV3	89795	broad.mit.edu	37	12	78583874	78583874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:78583874G>A	uc001syp.2	+	34	6339	c.6166G>A	c.(6166-6168)GGA>AGA	p.G2056R	NAV3_uc001syo.2_Missense_Mutation_p.G2034R|NAV3_uc010sub.1_Missense_Mutation_p.G1513R|NAV3_uc009zsf.2_Missense_Mutation_p.G865R	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	2056						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						TATACTCTCAGGACCGAGTGG	0.368										HNSCC(70;0.22)			22	23					0	0	0.062417	0	0
SYT1	6857	broad.mit.edu	37	12	79693241	79693241	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:79693241C>T	uc001sys.2	+	9	1391	c.720C>T	c.(718-720)ATC>ATT	p.I240I	SYT1_uc001syt.2_Silent_p.I240I|SYT1_uc001syu.2_Silent_p.I237I|SYT1_uc001syv.2_Silent_p.I240I	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	240	Cytoplasmic (Potential).|Phospholipid binding (Probable).|C2 1.				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						AGCATGACATCATTGGAGAAT	0.413													37	55					0	0	0.069456	0	0
C12orf50	160419	broad.mit.edu	37	12	88376946	88376946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:88376946C>T	uc001tam.1	-	12	1321	c.1153G>A	c.(1153-1155)GAT>AAT	p.D385N		NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	385										skin(2)|ovary(1)	3						CAGGCTGAATCATTATATGAT	0.274													18	69					0	0	0.043863	0	0
CCDC38	120935	broad.mit.edu	37	12	96260898	96260898	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:96260898C>T	uc001tek.1	-	16	1882	c.1648G>A	c.(1648-1650)GAA>AAA	p.E550K		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	550										skin(1)	1						GTTTTTGTTTCATTGACTAAA	0.294													9	37					0	0	0.080935	0	0
C12orf63	374467	broad.mit.edu	37	12	97137662	97137662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:97137662C>T	uc001tet.1	+	21	2884	c.2806C>T	c.(2806-2808)CGG>TGG	p.R936W		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	936										skin(6)|ovary(1)	7						TTTGTTAACTCGGGCTCATAG	0.398													12	21					0	0	0.093190	0	0
C12orf63	374467	broad.mit.edu	37	12	97147565	97147565	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:97147565G>A	uc001tet.1	+	23	3082	c.3004G>A	c.(3004-3006)GAC>AAC	p.D1002N		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	1002										skin(6)|ovary(1)	7						TAAAAGGAAGGACCCCTCGAA	0.423													20	35					0	0	0.091800	0	0
SLC5A8	160728	broad.mit.edu	37	12	101560440	101560440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:101560440G>A	uc001thz.3	-	12	1748	c.1358C>T	c.(1357-1359)TCT>TTT	p.S453F		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	453	Helical; (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						AACCCATAGAGAAATGGCAAA	0.383													6	28					0	0	0.021553	0	0
SLC5A8	160728	broad.mit.edu	37	12	101581218	101581218	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:101581218G>A	uc001thz.3	-	7	1299	c.909C>T	c.(907-909)TCC>TCT	p.S303S		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	303	Extracellular (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						CATGGTACCTGGAATATAGGG	0.438													14	23					0	0	0.024245	0	0
MED13L	23389	broad.mit.edu	37	12	116453037	116453037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:116453037G>A	uc001tvw.2	-	8	1107	c.1052C>T	c.(1051-1053)TCC>TTC	p.S351F		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	351					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		TCCATCTTGGGAAACCAGGTG	0.448													24	65					0	0	0.083992	0	0
VSIG10	54621	broad.mit.edu	37	12	118533381	118533381	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:118533381G>A	uc001tws.2	-	2	652	c.318C>T	c.(316-318)ATC>ATT	p.I106I		NM_019086	NP_061959	Q8N0Z9	VSI10_HUMAN	V-set and immunoglobulin domain containing 10	106	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane					0						TCACATTCAGGATCTCCTGGC	0.602													24	74					0	0	0.099896	0	0
KDM2B	84678	broad.mit.edu	37	12	121878775	121878776	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:121878775_121878776GG>AA	uc001uat.2	-	21	3557_3558	c.3453_3454CC>TT	c.(3451-3456)CTCCGG>CTTTGG	p.R1152W	KDM2B_uc001uaq.2_Missense_Mutation_p.R592W|KDM2B_uc010szy.1_Missense_Mutation_p.R592W|KDM2B_uc001uar.2_Missense_Mutation_p.R743W|KDM2B_uc001uas.2_Missense_Mutation_p.R1083W|KDM2B_uc001uau.2_Intron|KDM2B_uc001uao.2_Missense_Mutation_p.R400W|KDM2B_uc010szx.1_Missense_Mutation_p.R400W|KDM2B_uc001uap.2_RNA	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	1152	LRR 2.				embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						ACCAAGTCCCGGAGCCCTGGGG	0.653													25	31					0	0	0.004672	0	0
MORN3	283385	broad.mit.edu	37	12	122092317	122092317	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:122092317C>T	uc001uax.2	-	3	497	c.326G>A	c.(325-327)GGA>GAA	p.G109E	MORN3_uc001uay.2_RNA	NM_173855	NP_776254	Q6PF18	MORN3_HUMAN	MORN repeat containing 3	109	MORN 3.										0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000409)|Epithelial(86;0.00145)		CTCCTTGGGTCCGAAAAACTG	0.587													4	12					0	0	0.029380	0	0
CLIP1	6249	broad.mit.edu	37	12	122812709	122812709	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:122812709C>T	uc001ucg.1	-	16	3140	c.3034G>A	c.(3034-3036)GAA>AAA	p.E1012K	CLIP1_uc001uch.1_Missense_Mutation_p.E1001K|CLIP1_uc001uci.1_Missense_Mutation_p.E966K|CLIP1_uc001ucj.1_Missense_Mutation_p.E587K	NM_002956	NP_002947	P30622	CLIP1_HUMAN	restin isoform a	1012	Potential.				mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			ovary(2)|breast(1)	3	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		ATTTTCTTTTCCTGCAGAGAC	0.493													11	113					0	0	0.091800	0	0
EIF2B1	1967	broad.mit.edu	37	12	124118248	124118248	+	Splice_Site	SNP	C	T	T	rs11572912		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:124118248C>T	uc001ufm.2	-	1	1	c.-142_splice	c.e1-1		GTF2H3_uc001ufo.1_5'Flank|GTF2H3_uc010tau.1_5'Flank|EIF2B1_uc001ufn.2_Splice_Site|EIF2B1_uc010tat.1_Splice_Site	NM_001414	NP_001405	Q14232	EI2BA_HUMAN	eukaryotic translation initiation factor 2B,						cellular response to stimulus|oligodendrocyte development|regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex|membrane fraction|plasma membrane	protein binding|translation initiation factor activity				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.67e-05)|Epithelial(86;0.000353)|all cancers(50;0.00489)		CCGTACCCCTCTTCCGGCGCA	0.711													8	11					0	0	0.038147	0	0
RIMBP2	23504	broad.mit.edu	37	12	130926559	130926559	+	Silent	SNP	G	A	A	rs140257980	byFrequency	TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:130926559G>A	uc001uil.2	-	8	1451	c.1287C>T	c.(1285-1287)TTC>TTT	p.F429F	RIMBP2_uc001uim.2_Silent_p.F337F|RIMBP2_uc001uin.1_Silent_p.F88F	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	429	Fibronectin type-III 2.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		TGACGATGTCGAACTCCTCCT	0.562													15	47					0	0	0.033300	0	0
RIMBP2	23504	broad.mit.edu	37	12	130941179	130941179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:130941179C>T	uc001uil.2	-	4	333	c.169G>A	c.(169-171)GAC>AAC	p.D57N	RIMBP2_uc001uim.2_5'UTR	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	57						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		TTCTCCAGGTCCCGGGACAGC	0.632													9	13					0	0	0.080935	0	0
EP400	57634	broad.mit.edu	37	12	132445520	132445520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr12:132445520C>T	uc001ujn.2	+	1	391	c.356C>T	c.(355-357)TCA>TTA	p.S119L	EP400_uc001ujl.2_Missense_Mutation_p.S119L|EP400_uc001ujm.2_Missense_Mutation_p.S119L|EP400_uc001ujj.1_Missense_Mutation_p.S119L|EP400_uc001ujk.2_Missense_Mutation_p.S119L	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	119					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		GGGTCTCCATCATACATTCAG	0.647													8	12					0	0	0.058154	0	0
ATP12A	479	broad.mit.edu	37	13	25274961	25274961	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr13:25274961G>A	uc001upp.2	+	13	1969	c.1782G>A	c.(1780-1782)CCG>CCA	p.P594P	ATP12A_uc010aaa.2_Silent_p.P600P	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	594	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	TGAACTTTCCGACCTCCAACC	0.493													30	54					0	0	0.037714	0	0
RXFP2	122042	broad.mit.edu	37	13	32355863	32355863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr13:32355863G>A	uc001utt.2	+	10	912	c.841G>A	c.(841-843)GAT>AAT	p.D281N	RXFP2_uc010aba.2_Missense_Mutation_p.D264N	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	281	Extracellular (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		TCTGTCGTGCGATTCGCTCAC	0.323													20	33					0	0	0.076483	0	0
PDS5B	23047	broad.mit.edu	37	13	33309342	33309342	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr13:33309342G>A	uc010abf.2	+	21	2439	c.2281G>A	c.(2281-2283)GAA>AAA	p.E761K	PDS5B_uc010abg.2_RNA	NM_015032	NP_055847	Q9NTI5	PDS5B_HUMAN	PDS5, regulator of cohesion maintenance, homolog	761					cell division|cell proliferation|mitotic sister chromatid cohesion|negative regulation of cell proliferation	chromatin|nucleus	ATP binding|DNA binding|identical protein binding			ovary(2)|lung(1)|pancreas(1)	4		Lung SC(185;0.0367)		all cancers(112;5.55e-06)|Epithelial(112;2.7e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00303)|BRCA - Breast invasive adenocarcinoma(63;0.0204)		AAGCAACCTGGAACATCTCAT	0.373													18	45					0	0	0.043863	0	0
KL	9365	broad.mit.edu	37	13	33628014	33628014	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr13:33628014C>T	uc001uus.2	+	2	938	c.930C>T	c.(928-930)GAC>GAT	p.D310D	KL_uc001uur.1_Silent_p.D3D	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	310	Glycosyl hydrolase-1 1.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		GAATGACCGACCACAGCATCA	0.453													37	84					0	0	0.064281	0	0
FREM2	341640	broad.mit.edu	37	13	39433503	39433503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr13:39433503G>A	uc001uwv.2	+	14	7604	c.7295G>A	c.(7294-7296)CGG>CAG	p.R2432Q	FREM2_uc001uww.2_Missense_Mutation_p.R518Q	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2432	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		ACTTTGACGCGGTACCGGTGG	0.488													55	106					0	0	0.048971	0	0
NAA16	79612	broad.mit.edu	37	13	41941750	41941750	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr13:41941750C>T	uc001uyf.2	+	14	2039	c.1715C>T	c.(1714-1716)CCC>CTC	p.P572L	NAA16_uc010tfg.1_RNA	NM_024561	NP_078837	Q6N069	NAA16_HUMAN	NMDA receptor regulated 1-like protein isoform	572					N-terminal protein amino acid acetylation|positive regulation of transcription, DNA-dependent	cytoplasm|transcription factor complex	binding			central_nervous_system(1)	1						TATGATAATCCCTTAACCAAT	0.323													11	27					0	0	0.105934	0	0
ENOX1	55068	broad.mit.edu	37	13	43788171	43788171	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr13:43788171T>A	uc001uza.3	-	17	2187	c.1887A>T	c.(1885-1887)GAA>GAT	p.E629D	ENOX1_uc001uzb.3_Missense_Mutation_p.E629D|ENOX1_uc001uzc.3_Missense_Mutation_p.E629D|ENOX1_uc001uyz.3_Missense_Mutation_p.E238D	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	629					electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		TCCATCTTTTTTCCAGCGTGG	0.453													33	62					0	0	0.041601	0	0
SPERT	220082	broad.mit.edu	37	13	46287914	46287914	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr13:46287914G>A	uc001van.1	+	3	834	c.754G>A	c.(754-756)GAG>AAG	p.E252K	SPERT_uc001vao.2_Missense_Mutation_p.E216K	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	252	Potential.					cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		GCTCCTCCGGGAGGAGAATCG	0.682													8	12					0	0	0.038147	0	0
ATP7B	540	broad.mit.edu	37	13	52548143	52548143	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr13:52548143G>A	uc001vfw.2	-	2	1370	c.1213C>T	c.(1213-1215)CCC>TCC	p.P405S	ATP7B_uc010adv.2_Missense_Mutation_p.P405S|ATP7B_uc001vfx.2_Missense_Mutation_p.P405S|ATP7B_uc001vfy.2_Missense_Mutation_p.P294S|ATP7B_uc010tgt.1_Missense_Mutation_p.P405S|ATP7B_uc010tgu.1_Missense_Mutation_p.P405S|ATP7B_uc010tgv.1_Missense_Mutation_p.P405S|ATP7B_uc010tgw.1_Missense_Mutation_p.P373S	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	405	HMA 4.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		ATTACAGAGGGATTATAAAGA	0.473									Wilson_disease				37	78					0	0	0.064281	0	0
MYCBP2	23077	broad.mit.edu	37	13	77663163	77663163	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr13:77663163A>G	uc001vkf.2	-	62	10506	c.10415T>C	c.(10414-10416)GTT>GCT	p.V3472A	MYCBP2_uc010aev.2_Missense_Mutation_p.V2876A|MYCBP2_uc001vke.2_Missense_Mutation_p.V92A	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	3472					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GGAAGAACCAACTTCTATTAA	0.348													12	33					0	0	0.080935	0	0
MYCBP2	23077	broad.mit.edu	37	13	77700588	77700588	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr13:77700588G>A	uc001vkf.2	-	54	7726	c.7635C>T	c.(7633-7635)TTC>TTT	p.F2545F	MYCBP2_uc010aev.2_Silent_p.F1949F|MYCBP2_uc001vkg.1_Silent_p.F8F	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	2545					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		CTCCTCGCAAGAATGGCATAT	0.438													30	38					0	0	0.045705	0	0
SCEL	8796	broad.mit.edu	37	13	78176802	78176802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr13:78176802G>A	uc001vki.2	+	17	1161	c.991G>A	c.(991-993)GAA>AAA	p.E331K	SCEL_uc001vkj.2_Missense_Mutation_p.E311K|SCEL_uc010thx.1_Missense_Mutation_p.E309K	NM_144777	NP_659001	O95171	SCEL_HUMAN	sciellin isoform 1	331	16 X approximate tandem repeats.|5.				embryo development|keratinocyte differentiation	cornified envelope|cytoplasm|membrane	protein binding|zinc ion binding			ovary(4)|breast(1)	5		Acute lymphoblastic leukemia(28;0.0282)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0233)		ACAAAATCTCGAATCTGTTGC	0.338													57	104					0	0	0.048971	0	0
DNAJC3	5611	broad.mit.edu	37	13	96329538	96329538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr13:96329538G>A	uc001vmq.2	+	1	137	c.29G>A	c.(28-30)CGG>CAG	p.R10Q	DNAJC3_uc001vmp.2_Missense_Mutation_p.R10Q|DNAJC3_uc001vmr.2_Missense_Mutation_p.R10Q|uc001vmo.3_5'Flank	NM_006260	NP_006251	Q13217	DNJC3_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 3	10					protein folding|response to unfolded protein|response to virus		heat shock protein binding|protein kinase inhibitor activity|unfolded protein binding				0	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.126)			GTGACCAGCCGGCTGGGCTCG	0.692													32	48					0	0	0.064281	0	0
ITGBL1	9358	broad.mit.edu	37	13	102345015	102345015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr13:102345015C>T	uc001vpb.2	+	8	1315	c.1096C>T	c.(1096-1098)CGC>TGC	p.R366C	ITGBL1_uc010agb.2_Missense_Mutation_p.R317C|ITGBL1_uc001vpc.3_Missense_Mutation_p.R225C	NM_004791	NP_004782	O95965	ITGBL_HUMAN	integrin, beta-like 1 (with EGF-like repeat	366	VII.|Cysteine-rich tandem repeats.				cell-matrix adhesion|integrin-mediated signaling pathway	extracellular region|integrin complex	binding|receptor activity			ovary(1)|skin(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GTGTGATGATCGCCGCTGTGA	0.468													43	86					0	0	0.048971	0	0
MYO16	23026	broad.mit.edu	37	13	109535464	109535464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr13:109535464C>T	uc001vqt.1	+	13	1543	c.1417C>T	c.(1417-1419)CTC>TTC	p.L473F	MYO16_uc010agk.1_Missense_Mutation_p.L495F|MYO16_uc001vqu.1_Missense_Mutation_p.L273F	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	473	Myosin head-like 1.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			GCCTCCTCACCTCTTCTCCTG	0.562													80	130					0	0	0.048971	0	0
TUBGCP3	10426	broad.mit.edu	37	13	113208441	113208441	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr13:113208441C>T	uc001vse.1	-	8	1083	c.896G>A	c.(895-897)TGG>TAG	p.W299*	TUBGCP3_uc010tjq.1_Nonsense_Mutation_p.W289*|TUBGCP3_uc001vsf.2_Nonsense_Mutation_p.W299*|TUBGCP3_uc001vsg.1_Nonsense_Mutation_p.W299*	NM_006322	NP_006313	Q96CW5	GCP3_HUMAN	tubulin, gamma complex associated protein 3	299					G2/M transition of mitotic cell cycle|microtubule nucleation|single fertilization	centriole|cytosol|polar microtubule	gamma-tubulin binding|structural constituent of cytoskeleton			central_nervous_system(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)					ATTATGCAACCATCCCAACTC	0.438													37	45					0	0	0.074837	0	0
OR4N5	390437	broad.mit.edu	37	14	20612149	20612149	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr14:20612149C>T	uc010tla.1	+	1	255	c.255C>T	c.(253-255)TTC>TTT	p.F85F		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		TGGTGGACTTCCTCTCTGAGA	0.498													94	60					0	0	0.048971	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884055	24884055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr14:24884055C>T	uc001wpf.3	+	9	3418	c.3100C>T	c.(3100-3102)CTT>TTT	p.L1034F		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1034					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						GTGCCCGTCCCTTTCGGAGGA	0.642													36	25					0	0	0.098360	0	0
HEATR5A	25938	broad.mit.edu	37	14	31762600	31762600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr14:31762600C>T	uc001wrf.3	-	30	5250	c.5173G>A	c.(5173-5175)GAA>AAA	p.E1725K	HEATR5A_uc010ami.2_Missense_Mutation_p.E1548K	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	2012							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		TTGACACTTTCCTGATTGCCC	0.383													80	33					0	0	0.048971	0	0
NRXN3	9369	broad.mit.edu	37	14	79181308	79181308	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr14:79181308C>T	uc001xun.2	+	5	1242	c.751C>T	c.(751-753)CGA>TGA	p.R251*	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Nonsense_Mutation_p.R385*	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	624	Extracellular (Potential).|Laminin G-like 3.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		CAAGAACATTCGACAGCTGGC	0.547													21	10					0	0	0.062417	0	0
EML5	161436	broad.mit.edu	37	14	89220907	89220907	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr14:89220907C>T	uc001xxg.2	-	3	492	c.306G>A	c.(304-306)AAG>AAA	p.K102K		NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	102						cytoplasm|microtubule				ovary(3)	3						TATGAACATCCTTTAAAACTG	0.368													15	12					0	0	0.033300	0	0
SERPINA10	51156	broad.mit.edu	37	14	94756668	94756668	+	Missense_Mutation	SNP	C	T	T	rs143859072	byFrequency	TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr14:94756668C>T	uc001yct.2	-	2	729	c.263G>A	c.(262-264)CGA>CAA	p.R88Q	SERPINA10_uc001ycu.3_Missense_Mutation_p.R88Q	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	88					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		GGAGATCTTTCGCAGCAGGCT	0.572													12	41					0	0	0.093190	0	0
AHNAK2	113146	broad.mit.edu	37	14	105413621	105413621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr14:105413621C>T	uc010axc.1	-	7	8287	c.8167G>A	c.(8167-8169)GAG>AAG	p.E2723K	AHNAK2_uc001ypx.2_Missense_Mutation_p.E2623K	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2723						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCGGCTCCCTCGGGAACGTGG	0.607													109	49					0	0	0.048971	0	0
Unknown	0	broad.mit.edu	37	15	20495408	20495408	+	RNA	SNP	G	A	A	rs2954587	by1000genomes	TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:20495408G>A	uc001ytf.1	+	5		c.611G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		TCTGTGTGAGGAAAATGAATC	0.388													19	81					0	0	0.043863	0	0
OR4M2	390538	broad.mit.edu	37	15	22369431	22369431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:22369431C>T	uc010tzu.1	+	1	856	c.856C>T	c.(856-858)CCC>TCC	p.P286S	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TTTACGTAATCCCATTATTTA	0.363													24	84					0	0	0.076483	0	0
Unknown	0	broad.mit.edu	37	15	28900644	28900644	+	RNA	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:28900644C>T	uc010uan.1	+	3		c.575C>T			uc010azc.2_Intron|uc010uao.1_RNA					Homo sapiens cDNA FLJ55955 complete cds, highly similar to HECT domain and RCC1-like domain-containing protein 2.																		TCCTCAGAGTCCATGCTGAGG	0.642													7	23					0	0	0.029380	0	0
RPAP1	26015	broad.mit.edu	37	15	41815547	41815547	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:41815547G>T	uc001zod.2	-	18	2566	c.2442C>A	c.(2440-2442)AGC>AGA	p.S814R	RPAP1_uc001zoc.2_5'UTR	NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	814						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		CCGGGCATGAGCTTGGCTGGT	0.602													5	40					0.000602214	0.000614113	0.014758	1	0
CATSPER2	117155	broad.mit.edu	37	15	43940180	43940180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:43940180G>A	uc001zsh.2	-	2	295	c.80C>T	c.(79-81)TCT>TTT	p.S27F	CATSPER2_uc010bdm.2_RNA|CATSPER2_uc001zsi.2_Missense_Mutation_p.S27F|CATSPER2_uc001zsj.2_Missense_Mutation_p.S27F|CATSPER2_uc001zsk.2_Missense_Mutation_p.S27F|CATSPER2_uc001zsl.1_Intron	NM_172095	NP_742093	Q96P56	CTSR2_HUMAN	sperm-associated cation channel 2 isoform 2	27	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			ovary(1)	1		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		CTCAATGAGAGAGAAAGTATC	0.463													64	210					0	0	0.048971	0	0
EIF3J	8669	broad.mit.edu	37	15	44852491	44852491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:44852491C>T	uc001ztv.2	+	7	743	c.616C>T	c.(616-618)CTT>TTT	p.L206F	EIF3J_uc010ueg.1_Missense_Mutation_p.L152F|EIF3J_uc001ztw.2_Missense_Mutation_p.L157F	NM_003758	NP_003749	O75822	EIF3J_HUMAN	eukaryotic translation initiation factor 3,	206						cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity				0		all_cancers(109;2.81e-14)|all_epithelial(112;2.8e-12)|Lung NSC(122;1.66e-07)|all_lung(180;1.47e-06)|Melanoma(134;0.0122)		all cancers(107;3.13e-20)|GBM - Glioblastoma multiforme(94;9.81e-07)|COAD - Colon adenocarcinoma(120;0.0754)|Colorectal(105;0.0758)		ACTGACTGTGCTTTGCAGTGA	0.323													12	51					0	0	0.093190	0	0
SPG11	80208	broad.mit.edu	37	15	44865889	44865889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:44865889G>A	uc001ztx.2	-	32	6092	c.6061C>T	c.(6061-6063)CGG>TGG	p.R2021W	SPG11_uc010bdw.2_Intron|SPG11_uc010ueh.1_Intron|SPG11_uc010uei.1_Missense_Mutation_p.R2021W|SPG11_uc001zty.1_Missense_Mutation_p.R750W	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	2021	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		AAGATTTTCCGGAGCATGGCT	0.547													22	41					0	0	0.069288	0	0
DUOX2	50506	broad.mit.edu	37	15	45392024	45392024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:45392024C>T	uc010bea.2	-	25	3454	c.3251G>A	c.(3250-3252)CGA>CAA	p.R1084Q	DUOX2_uc001zun.2_Missense_Mutation_p.R1084Q	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1084	Interaction with TXNDC11 (By similarity).|Helical; (Potential).|Ferric oxidoreductase.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CGCCGTGCCTCGTGACAGGAT	0.567													28	42					0	0	0.037714	0	0
MAPK6	5597	broad.mit.edu	37	15	52356175	52356175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:52356175C>T	uc002abp.2	+	6	1938	c.1144C>T	c.(1144-1146)CCA>TCA	p.P382S		NM_002748	NP_002739	Q16659	MK06_HUMAN	mitogen-activated protein kinase 6	382					cell cycle		ATP binding|MAP kinase activity			lung(3)|ovary(1)	4				all cancers(107;0.0028)		TCAGCTTGATCCAAGAGCTCT	0.398													23	48					0	0	0.069288	0	0
UNC13C	440279	broad.mit.edu	37	15	54707184	54707184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:54707184C>T	uc002ack.2	+	17	4852	c.4852C>T	c.(4852-4854)CCT>TCT	p.P1618S	UNC13C_uc002acl.2_Missense_Mutation_p.P448S	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1618					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TTTTAGGTTTCCTCAAGAGCT	0.303													14	28					0	0	0.028581	0	0
ALDH1A2	8854	broad.mit.edu	37	15	58285260	58285260	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:58285260G>A	uc002aex.2	-	6	625	c.567C>T	c.(565-567)CCC>CCT	p.P189P	ALDH1A2_uc002aey.2_Silent_p.P189P|ALDH1A2_uc010ugv.1_Silent_p.P168P|ALDH1A2_uc010ugw.1_Silent_p.P160P|ALDH1A2_uc002aew.2_Silent_p.P93P	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	189					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	ACATCAGCAGGGGGAAGTTCC	0.413													31	22					0	0	0.059317	0	0
C15orf44	81556	broad.mit.edu	37	15	65883976	65883976	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:65883976G>A	uc002apd.2	-	9	1416	c.1080C>T	c.(1078-1080)CTC>CTT	p.L360L	C15orf44_uc010uix.1_Silent_p.L396L|C15orf44_uc010uiz.1_Silent_p.L324L|C15orf44_uc010uja.1_Silent_p.L310L|C15orf44_uc010ujb.1_Silent_p.L281L|C15orf44_uc002ape.3_Silent_p.L360L|C15orf44_uc010uiy.1_Silent_p.L281L	NM_030800	NP_110427	Q96SY0	CO044_HUMAN	hypothetical protein LOC81556 isoform 2	360										ovary(1)	1						CTAGCCATGGGAGAGGTTCTG	0.443													22	35					0	0	0.062417	0	0
MEGF11	84465	broad.mit.edu	37	15	66207909	66207909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:66207909C>T	uc002apm.2	-	19	2513	c.2372G>A	c.(2371-2373)GGG>GAG	p.G791E	MEGF11_uc002apl.2_Missense_Mutation_p.G716E|MEGF11_uc002apn.1_Missense_Mutation_p.G791E	NM_032445	NP_115821	A6BM72	MEG11_HUMAN	multiple EGF-like-domains 11 precursor	791	EGF-like 14.					basolateral plasma membrane|integral to membrane				pancreas(1)	1						CTGCTGACACCCATAGCCAAA	0.537													10	39					0	0	0.069234	0	0
HCN4	10021	broad.mit.edu	37	15	73615870	73615870	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:73615870G>T	uc002avp.2	-	8	3558	c.2564C>A	c.(2563-2565)TCC>TAC	p.S855Y		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	855	Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		GTGGAAGGAGGATGAAGACGG	0.677													34	45					1.47197e-15	1.52109e-15	0.098360	1	0
CCDC33	80125	broad.mit.edu	37	15	74622553	74622553	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:74622553C>T	uc002axo.2	+	12	1708	c.1314C>T	c.(1312-1314)GCC>GCT	p.A438A	CCDC33_uc002axp.2_Silent_p.A260A|CCDC33_uc002axq.2_Silent_p.A31A|CCDC33_uc002axr.2_Silent_p.A31A	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	641	Potential.						protein binding			ovary(3)|skin(2)	5						ACCGGCGGGCCATGCAGAAGA	0.597													19	25					0	0	0.055883	0	0
SCAMP5	192683	broad.mit.edu	37	15	75310852	75310852	+	Silent	SNP	C	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:75310852C>G	uc002azk.1	+	6	651	c.489C>G	c.(487-489)GTC>GTG	p.V163V	SCAMP5_uc002azl.1_Silent_p.V163V|SCAMP5_uc002azm.1_Silent_p.V163V|SCAMP5_uc002azn.1_Silent_p.V171V|SCAMP5_uc010uly.1_Silent_p.V92V	NM_138967	NP_620417	Q8TAC9	SCAM5_HUMAN	secretory carrier membrane protein 5	163	Helical; (Potential).				exocytosis|negative regulation of endocytosis|positive regulation of calcium ion-dependent exocytosis|positive regulation of cytokine secretion|protein transport|response to endoplasmic reticulum stress	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane|trans-Golgi network membrane	protein binding			ovary(1)	1						TGATGGCCGTCTTTTCCTTCA	0.552													4	185					0	0	0.009096	0	0
NEIL1	79661	broad.mit.edu	37	15	75644680	75644680	+	Silent	SNP	C	T	T	rs34322656		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:75644680C>T	uc002bad.2	+	4	1076	c.570C>T	c.(568-570)CCC>CCT	p.P190P	NEIL1_uc002bae.2_Silent_p.P276P	NM_024608	NP_078884	Q96FI4	NEIL1_HUMAN	nei endonuclease VIII-like 1	190					base-excision repair|negative regulation of nuclease activity|nucleotide-excision repair|response to oxidative stress	cytoplasm|nucleus	damaged DNA binding|DNA-(apurinic or apyrimidinic site) lyase activity|protein C-terminus binding|zinc ion binding			ovary(1)	1						AGATCCCCCCCTTTGAGAAGG	0.652								BER_DNA_glycosylases					30	73					0	0	0.074837	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79064127	79064128	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:79064127_79064128GG>AA	uc002bej.3	-	15	2386_2387	c.2175_2176CC>TT	c.(2173-2178)ATCCGC>ATTTGC	p.R726C	ADAMTS7_uc010und.1_Intron|ADAMTS7_uc002bek.1_Missense_Mutation_p.R726C	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	726	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						TCTTGGATGCGGATCTCGCGTG	0.614													19	50					0	0	0.004672	0	0
BNC1	646	broad.mit.edu	37	15	83932004	83932004	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:83932004G>A	uc002bjt.1	-	4	2087	c.1999C>T	c.(1999-2001)CCT>TCT	p.P667S	BNC1_uc010uos.1_Missense_Mutation_p.P655S	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	667					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						TCAGAAAAAGGAACTTGGGGT	0.532													41	44					0	0	0.092188	0	0
ALPK3	57538	broad.mit.edu	37	15	85411399	85411399	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:85411399C>T	uc002ble.2	+	14	5603	c.5436C>T	c.(5434-5436)TCC>TCT	p.S1812S	ALPK3_uc010upc.1_Silent_p.S113S	NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1812	Alpha-type protein kinase.				heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TCGCCTCCTCCCACCAGTGCA	0.627													83	99					0	0	0.048971	0	0
AGBL1	123624	broad.mit.edu	37	15	86686988	86686988	+	Silent	SNP	G	A	A	rs60485756		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:86686988G>A	uc002blz.1	+	2	116	c.36G>A	c.(34-36)CAG>CAA	p.Q12Q		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	12					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						CTCTTCTGCAGACCCTGGTAG	0.537													21	80					0	0	0.049695	0	0
CHD2	1106	broad.mit.edu	37	15	93444508	93444508	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:93444508C>T	uc002bsp.2	+	2	616	c.41C>T	c.(40-42)TCG>TTG	p.S14L	CHD2_uc002bsm.1_Missense_Mutation_p.S14L|CHD2_uc002bsn.2_Missense_Mutation_p.S14L|CHD2_uc002bso.1_Missense_Mutation_p.S14L	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	14	Ser-rich.				regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			GAGGACAGTTCGCTACACAGC	0.403													3	11					0	0	0.004672	0	0
CHD2	1106	broad.mit.edu	37	15	93543829	93543829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:93543829C>T	uc002bsp.2	+	32	4671	c.4096C>T	c.(4096-4098)CCT>TCT	p.P1366S	CHD2_uc002bso.1_Missense_Mutation_p.P1366S	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	1366					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			GCTTTCATCTCCTAGGCATTC	0.423													34	59					0	0	0.086207	0	0
TTC23	64927	broad.mit.edu	37	15	99678315	99678315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:99678315G>A	uc002bur.2	-	13	1775	c.1244C>T	c.(1243-1245)TCG>TTG	p.S415L	TTC23_uc002bus.2_Missense_Mutation_p.S415L|TTC23_uc002but.2_Missense_Mutation_p.S415L|TTC23_uc002buu.2_Missense_Mutation_p.S415L|TTC23_uc002buv.2_Missense_Mutation_p.S415L|TTC23_uc002bux.2_Missense_Mutation_p.S415L|TTC23_uc002buw.2_Missense_Mutation_p.S415L|TTC23_uc010boq.2_RNA|TTC23_uc002buy.2_Missense_Mutation_p.S415L|TTC23_uc010bor.2_Missense_Mutation_p.S415L	NM_022905	NP_075056	Q5W5X9	TTC23_HUMAN	tetratricopeptide repeat domain 23	415							binding				0	all_cancers(4;1.49e-13)|Lung NSC(78;0.000545)|all_lung(78;0.00121)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		all cancers(5;8.11e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00215)			CCTTGGCTTCGAAGCAACCTT	0.642													19	52					0	0	0.055883	0	0
OR4F6	390648	broad.mit.edu	37	15	102345964	102345964	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr15:102345964C>T	uc010utr.1	+	1	42	c.42C>T	c.(40-42)TTC>TTT	p.F14F		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			AGTTTGTGTTCCTGGGACTCT	0.478													72	71					0	0	0.048971	0	0
MSLN	10232	broad.mit.edu	37	16	815753	815753	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:815753G>A	uc002cjw.1	+	10	909	c.858G>A	c.(856-858)CGG>CGA	p.R286R	MSLN_uc002cjt.1_Silent_p.R286R|MSLN_uc002cju.1_Silent_p.R286R|MSLN_uc010brd.1_Silent_p.R285R|MSLN_uc002cjv.1_Silent_p.R286R|MSLN_uc002cjx.1_Silent_p.R286R|MSLN_uc002cjy.1_5'Flank	NM_013404	NP_037536	Q13421	MSLN_HUMAN	mesothelin isoform 2 preproprotein	286	Required for megakaryocyte-potentiating factor activity.				cell adhesion	anchored to membrane|extracellular region|Golgi apparatus|plasma membrane				pancreas(1)	1		Hepatocellular(780;0.00335)				AGCCTGAACGGACCATCCTCC	0.716													7	27					0	0	0.038147	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270230	1270230	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:1270230G>A	uc002cks.2	+	35	6546	c.6298G>A	c.(6298-6300)GAG>AAG	p.E2100K	CACNA1H_uc002ckt.2_Missense_Mutation_p.E2094K|CACNA1H_uc002cku.2_Missense_Mutation_p.E795K|CACNA1H_uc010brj.2_Missense_Mutation_p.E811K|CACNA1H_uc002ckv.2_Missense_Mutation_p.E789K	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2100	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	AGCCGACGAGGAGGTCAGCCA	0.741													5	12					0	0	0.038147	0	0
NUBP2	10101	broad.mit.edu	37	16	1837746	1837746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:1837746C>T	uc002cmw.3	+	4	492	c.403C>T	c.(403-405)CCG>TCG	p.P135S	NUBP2_uc002cmx.3_5'UTR|NUBP2_uc010brx.2_Missense_Mutation_p.P75S	NM_012225	NP_036357	Q9Y5Y2	NUBP2_HUMAN	nucleotide binding protein 2 (MinD homolog, E.	135						microtubule organizing center|nucleus	4 iron, 4 sulfur cluster binding|ATP binding|metal ion binding|protein binding				0						GGACACGCCCCCGGGGACCTC	0.682													50	50					0	0	0.048971	0	0
PKD1	5310	broad.mit.edu	37	16	2159102	2159102	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:2159102C>T	uc002cos.1	-	15	6275	c.6066G>A	c.(6064-6066)TCG>TCA	p.S2022S	PKD1_uc002cot.1_Silent_p.S2022S	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	2022	PKD 16.|Extracellular (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						CGTCGCGGCCCGACAGGATGA	0.682													13	55					0	0	0.020292	0	0
MMP25	64386	broad.mit.edu	37	16	3097455	3097455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:3097455C>T	uc002cth.2	+	2	376	c.139C>T	c.(139-141)CCT>TCT	p.P47S	MMP25_uc002cti.1_5'UTR	NM_022468	NP_071913	Q9NPA2	MMP25_HUMAN	matrix metalloproteinase 25 preproprotein	47				P -> R (in Ref. 3; BAB20584).	inflammatory response|proteolysis	anchored to membrane|cell surface|plasma membrane|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0						GCCACCCCACCCTGCCCAGGC	0.652													42	52					0	0	0.048971	0	0
OR1F1	4992	broad.mit.edu	37	16	3254843	3254843	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:3254843C>T	uc010uwu.1	+	1	597	c.597C>T	c.(595-597)ATC>ATT	p.I199I		NM_012360	NP_036492	O43749	OR1F1_HUMAN	olfactory receptor, family 1, subfamily F,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGGTCATAATCCTTAGTGAGG	0.493													42	46					0	0	0.039052	0	0
CREBBP	1387	broad.mit.edu	37	16	3795308	3795308	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:3795308A>G	uc002cvv.2	-	22	4088	c.3884T>C	c.(3883-3885)GTT>GCT	p.V1295A	CREBBP_uc002cvw.2_Missense_Mutation_p.V1257A	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	1295	Cys/His-rich.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		ATAGTGCAGAACGCAAATCTG	0.542			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				7	25					0	0	0.038147	0	0
CREBBP	1387	broad.mit.edu	37	16	3860727	3860727	+	Silent	SNP	T	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:3860727T>A	uc002cvv.2	-	3	1056	c.852A>T	c.(850-852)GGA>GGT	p.G284G	CREBBP_uc002cvw.2_Silent_p.G284G	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	284	Interaction with SRCAP.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		TTGGCTGCCCTCCAGCTTGAC	0.478			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				31	38					0	0	0.045705	0	0
ABCC6	368	broad.mit.edu	37	16	16244555	16244555	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:16244555G>T	uc002den.3	-	30	4320	c.4283C>A	c.(4282-4284)GCT>GAT	p.A1428D	ABCC6_uc010bvo.2_RNA|ABCC6_uc002dem.2_Missense_Mutation_p.A180D	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	1428	Cytoplasmic (By similarity).|ABC transporter 2.				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		GGCAGCAGTAGCCTCGTCCAG	0.622													9	14					1.76689e-08	1.80975e-08	0.058154	1	0
PDILT	204474	broad.mit.edu	37	16	20381012	20381012	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:20381012C>T	uc002dhc.1	-	8	1142	c.919_splice	c.e8-1	p.I307_splice		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis						cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						TGAAAAGGATCTGCCAAAGAA	0.488													53	52					0	0	0.048971	0	0
ACSM2A	123876	broad.mit.edu	37	16	20481027	20481027	+	Silent	SNP	C	T	T	rs145878643		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:20481027C>T	uc010bwe.2	+	5	821	c.582C>T	c.(580-582)TTC>TTT	p.F194F	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_Silent_p.F115F|ACSM2A_uc002dhf.3_Silent_p.F194F|ACSM2A_uc002dhg.3_Silent_p.F194F|ACSM2A_uc010vay.1_Silent_p.F115F	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	194					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						GGCTGAACTTCAAGAAACTAC	0.269													34	139					0	0	0.050027	0	0
DNAH3	55567	broad.mit.edu	37	16	20976119	20976119	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:20976119C>T	uc010vbe.1	-	53	9087	c.9087G>A	c.(9085-9087)AAG>AAA	p.K3029K	DNAH3_uc010vbd.1_Silent_p.K464K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3029					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TGACCTTGTCCTTACATTCAG	0.527													22	23					0	0	0.076483	0	0
PRKCB	5579	broad.mit.edu	37	16	24104162	24104162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:24104162C>T	uc002dmd.2	+	6	777	c.580C>T	c.(580-582)CCC>TCC	p.P194S	PRKCB_uc002dme.2_Missense_Mutation_p.P194S	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	194	C2.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	CCTGTCAGATCCCTACGTAAA	0.408													22	84					0	0	0.083992	0	0
CACNG3	10368	broad.mit.edu	37	16	24373176	24373177	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:24373176_24373177CC>TT	uc002dmf.2	+	4	2140_2141	c.940_941CC>TT	c.(940-942)CCC>TTC	p.P314F		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	314					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		GCGCACCACGCCCGTCTGAACT	0.554													18	34					0	0	0.004672	0	0
RBBP6	5930	broad.mit.edu	37	16	24581171	24581171	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:24581171C>T	uc002dmh.2	+	17	4200	c.3160C>T	c.(3160-3162)CGA>TGA	p.R1054*	RBBP6_uc010vcb.1_Nonsense_Mutation_p.R921*|RBBP6_uc002dmi.2_Nonsense_Mutation_p.R1020*|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Nonsense_Mutation_p.R887*	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	1054	Interaction with RB1 (By similarity).				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		GAGATCTCCTCGATCTGAACC	0.398													24	33					0	0	0.083992	0	0
Unknown	0	broad.mit.edu	37	16	28354372	28354372	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:28354372G>A	uc010vcq.1	-	7	833	c.780C>T	c.(778-780)TCC>TCT	p.S260S	uc010vcr.1_Silent_p.S278S					SubName: Full=LOC728741 protein;																		TGAGGCTCAGGGAGTTATCAG	0.507													31	12					0	0	0.054565	0	0
ATP2A1	487	broad.mit.edu	37	16	28895898	28895898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:28895898G>A	uc002dro.1	+	6	650	c.466G>A	c.(466-468)GGG>AGG	p.G156R	uc010vct.1_Intron|ATP2A1_uc002drn.1_Missense_Mutation_p.G156R|ATP2A1_uc002drp.1_Missense_Mutation_p.G31R	NM_173201	NP_775293	O14983	AT2A1_HUMAN	ATPase, Ca++ transporting, fast twitch 1 isoform	156	Cytoplasmic (By similarity).				apoptosis in response to endoplasmic reticulum stress|apoptotic mitochondrial changes|ATP biosynthetic process|calcium ion import|elevation of endoplasmic reticulum calcium ion concentration|elevation of mitochondrial calcium ion concentration|maintenance of mitochondrion location|negative regulation of striated muscle contraction|platelet activation|positive regulation of fast-twitch skeletal muscle fiber contraction|reduction of endoplasmic reticulum calcium ion concentration|relaxation of skeletal muscle|response to endoplasmic reticulum stress	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|H zone|I band|microsome|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum|sarcoplasmic reticulum membrane	ATP binding|ATP binding|calcium ion binding|calcium ion binding|calcium-transporting ATPase activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CTCCACAGTGGGGGACAAAGT	0.537													21	15					0	0	0.069288	0	0
SPNS1	83985	broad.mit.edu	37	16	28990565	28990565	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:28990565C>T	uc010vdi.1	+	5	674	c.534C>T	c.(532-534)CTC>CTT	p.L178L	uc010vct.1_Intron|SPNS1_uc002dry.2_Silent_p.L178L|SPNS1_uc002drx.2_Silent_p.L105L|SPNS1_uc002dsa.2_Silent_p.L178L|SPNS1_uc002drz.2_Silent_p.L178L|SPNS1_uc010byp.2_Silent_p.L156L|SPNS1_uc010byq.1_Silent_p.L105L	NM_001142448	NP_001135920	Q9H2V7	SPNS1_HUMAN	spinster homolog 1 isoform 1	178	Helical; (Potential).				lipid transport|transmembrane transport	integral to membrane|mitochondrial inner membrane	protein binding				0						TTGCCGACCTCTTTGTGGCCG	0.652													21	89					0	0	0.062417	0	0
TGFB1I1	7041	broad.mit.edu	37	16	31487374	31487374	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:31487374C>T	uc002ecd.1	+	8	782	c.756C>T	c.(754-756)TTC>TTT	p.F252F	TGFB1I1_uc002ece.1_Silent_p.F235F|TGFB1I1_uc010caq.1_Silent_p.F91F	NM_001042454	NP_001035919	O43294	TGFI1_HUMAN	transforming growth factor beta 1 induced	252	LIM zinc-binding 1.				androgen receptor signaling pathway|cell adhesion|negative regulation of cell proliferation|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor beta receptor signaling pathway|transcription from RNA polymerase II promoter|ubiquitin-dependent SMAD protein catabolic process|Wnt receptor signaling pathway	cytoplasm|cytoskeleton|focal adhesion|nuclear matrix	androgen receptor binding|I-SMAD binding|Roundabout binding|transcription coactivator activity|zinc ion binding				0						CCGAGCACTTCGTTTGCGGAG	0.657													27	50					0	0	0.030593	0	0
TSNAXIP1	55815	broad.mit.edu	37	16	67858577	67858577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:67858577G>A	uc002euj.2	+	6	805	c.411G>A	c.(409-411)ATG>ATA	p.M137I	TSNAXIP1_uc010cep.2_Missense_Mutation_p.M1I|TSNAXIP1_uc010vjz.1_Intron|TSNAXIP1_uc002euf.3_Intron|TSNAXIP1_uc010vka.1_Missense_Mutation_p.M191I|TSNAXIP1_uc010vkb.1_Missense_Mutation_p.M122I|TSNAXIP1_uc002eug.3_5'UTR|TSNAXIP1_uc002euh.3_5'UTR|TSNAXIP1_uc002eui.3_Intron|TSNAXIP1_uc002euk.2_5'UTR	NM_018430	NP_060900	Q2TAA8	TXIP1_HUMAN	translin-associated factor X interacting protein	137					cell differentiation|multicellular organismal development|spermatogenesis	perinuclear region of cytoplasm					0		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00432)|Epithelial(162;0.0192)|all cancers(182;0.125)		TCCTGGCCATGAGAGCTGAGG	0.468													17	17					0	0	0.033300	0	0
SLC7A6	9057	broad.mit.edu	37	16	68325482	68325482	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:68325482G>A	uc002evt.1	+	8	1249	c.940G>A	c.(940-942)GGC>AGC	p.G314S	SLC7A6_uc010cfb.1_RNA|SLC7A6_uc002evu.1_Missense_Mutation_p.G314S|SLC7A6_uc002evv.1_RNA|SLC7A6_uc010cfc.1_RNA	NM_001076785	NP_001070253	Q92536	YLAT2_HUMAN	solute carrier family 7 (cationic amino acid	314	Helical; (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	basolateral plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|antiporter activity			central_nervous_system(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.034)|Epithelial(162;0.0948)		CCAGACGTTTGGCATGTTCAG	0.507													85	43					0	0	0.048971	0	0
PMFBP1	83449	broad.mit.edu	37	16	72164153	72164153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:72164153C>T	uc002fcc.3	-	12	1928	c.1756G>A	c.(1756-1758)GAT>AAT	p.D586N	PMFBP1_uc002fcd.2_Missense_Mutation_p.D581N|PMFBP1_uc002fce.2_Intron|PMFBP1_uc002fcf.2_Missense_Mutation_p.D436N|PMFBP1_uc010cgo.1_5'Flank	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	586	Potential.									ovary(2)	2		Ovarian(137;0.179)				ATTTTCATATCCTGCTCAGCC	0.468													48	20					0	0	0.048971	0	0
JPH3	57338	broad.mit.edu	37	16	87678069	87678069	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr16:87678069C>T	uc002fkd.2	+	2	842	c.588C>T	c.(586-588)TTC>TTT	p.F196F	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	196	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		GCGGGGGCTTCGTGCTCGTGG	0.682													41	27					0	0	0.111260	0	0
MYO1C	4641	broad.mit.edu	37	17	1373566	1373566	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:1373566T>C	uc002fsp.2	-	24	2649	c.2429A>G	c.(2428-2430)GAC>GGC	p.D810G	MYO1C_uc002fsn.2_Missense_Mutation_p.D791G|MYO1C_uc002fso.2_Missense_Mutation_p.D775G|MYO1C_uc010vqj.1_Missense_Mutation_p.D775G	NM_001080779	NP_001074248	O00159	MYO1C_HUMAN	myosin IC isoform a	810					mRNA transport|protein transport|transmembrane transport	basal plasma membrane|cytoplasm|filamentous actin|lateral plasma membrane|nuclear pore|nucleolus|nucleoplasm|stereocilium membrane	actin binding|ATP binding|calmodulin binding|motor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		GCGCACATGGTCCAGGAAGAA	0.682													8	2					0	0	0.038147	0	0
PITPNM3	83394	broad.mit.edu	37	17	6376061	6376061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:6376061C>T	uc002gdd.3	-	11	1496	c.1345G>A	c.(1345-1347)GAG>AAG	p.E449K	PITPNM3_uc010cln.2_Missense_Mutation_p.E413K|PITPNM3_uc010clm.2_5'UTR|PITPNM3_uc002gdc.3_Missense_Mutation_p.E40K	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	449	DDHD.				phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		AACTTGGGCTCCAGCAGTGGC	0.652													19	14					0	0	0.069288	0	0
DVL2	1856	broad.mit.edu	37	17	7134113	7134114	+	Missense_Mutation	DNP	CA	AC	AC			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:7134113_7134114CA>AC	uc002gez.1	-	2	479_480	c.197_198TG>GT	c.(196-198)GTG>GGT	p.V66G	DVL2_uc010vtr.1_Missense_Mutation_p.V66G|DVL2_uc010vts.1_5'Flank|DVL2_uc010clz.1_Missense_Mutation_p.V66G	NM_004422	NP_004413	O14641	DVL2_HUMAN	dishevelled 2	66	DIX.				canonical Wnt receptor signaling pathway involved in regulation of cell proliferation|intracellular signal transduction|neural tube closure|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|segment specification|transcription from RNA polymerase II promoter	cytosol|nucleus|plasma membrane	frizzled binding|identical protein binding|signal transducer activity			lung(1)|kidney(1)	2						CTTCCTTCACCACCCTGCCAAG	0.574													33	23					0	0	0.004672	0	0
ZBTB4	57659	broad.mit.edu	37	17	7365360	7365360	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:7365360G>A	uc002ghc.3	-	4	3191	c.2941C>T	c.(2941-2943)CCA>TCA	p.P981S	ZBTB4_uc002ghd.3_Missense_Mutation_p.P981S	NM_001128833	NP_001122305	Q9P1Z0	ZBTB4_HUMAN	zinc finger and BTB domain containing 4	981					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(1115;3.46e-05)|Myeloproliferative disorder(207;0.0255)		COAD - Colon adenocarcinoma(228;4.1e-06)|READ - Rectum adenocarcinoma(115;0.0642)		GGTGTTGGTGGGGCAGGGGGT	0.602													55	110					0	0	0.048971	0	0
SHBG	6462	broad.mit.edu	37	17	7535317	7535317	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:7535317T>C	uc002gie.2	+	6	874	c.836T>C	c.(835-837)CTC>CCC	p.L279P	SHBG_uc010cmo.2_Missense_Mutation_p.L167P|SHBG_uc010cmp.2_Intron|SHBG_uc010cmq.2_Missense_Mutation_p.L167P|SHBG_uc010cmr.2_Intron|SHBG_uc010cms.2_Intron|SHBG_uc010cmt.2_Missense_Mutation_p.L221P|SHBG_uc010cmu.2_Missense_Mutation_p.L221P|SHBG_uc010cmz.2_Intron|SHBG_uc010cmv.2_Missense_Mutation_p.L167P|SHBG_uc010cmw.2_Intron|SHBG_uc010cmx.2_Intron|SHBG_uc010cmy.2_Missense_Mutation_p.L221P|SHBG_uc002gid.3_Missense_Mutation_p.L221P|SHBG_uc010cnd.2_Intron|SHBG_uc010cna.2_Intron|SHBG_uc010vue.1_Missense_Mutation_p.L261P|SHBG_uc010vuf.1_Missense_Mutation_p.L279P|SHBG_uc010cnb.2_Intron|SHBG_uc010cnc.2_Missense_Mutation_p.L225P	NM_001040	NP_001031	P04278	SHBG_HUMAN	sex hormone-binding globulin isoform 1	279	Laminin G-like 2.				hormone transport	extracellular region	androgen binding|protein homodimerization activity	p.0?(1)|p.?(1)			0		all_cancers(10;0.0867)		READ - Rectum adenocarcinoma(115;0.168)	Danazol(DB01406)|Dromostanolone(DB00858)|Estradiol(DB00783)|Estrone(DB00655)|Fluoxymesterone(DB01185)|Hydrocortisone(DB00741)|Mitotane(DB00648)|Norethindrone(DB00717)|Testosterone(DB00624)	TGGCTCAGTCTCCACCTCCAA	0.557													4	165					0	0	0.014758	0	0
TP53	7157	broad.mit.edu	37	17	7577539	7577539	+	Missense_Mutation	SNP	G	A	A	rs121912651		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:7577539G>A	uc002gim.2	-	7	936	c.742C>T	c.(742-744)CGG>TGG	p.R248W	TP53_uc002gig.1_Missense_Mutation_p.R248W|TP53_uc002gih.2_Missense_Mutation_p.R248W|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R116W|TP53_uc010cng.1_Missense_Mutation_p.R116W|TP53_uc002gii.1_Missense_Mutation_p.R116W|TP53_uc010cnh.1_Missense_Mutation_p.R248W|TP53_uc010cni.1_Missense_Mutation_p.R248W|TP53_uc002gij.2_Missense_Mutation_p.R248W|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R155W|TP53_uc002gio.2_Missense_Mutation_p.R116W	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	248	|Interaction with HIPK1 (By similarity).|Interacts with the 53BP2 SH3 domain.|Interaction with AXIN1 (By similarity).		R -> W (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> P (in sporadic cancers; somatic mutation).|R -> G (in sporadic cancers; somatic mutation).|R -> L (in sporadic cancers; somatic mutation).|NR -> KW (in sporadic cancers; somatic mutation).|R -> C (in a sporadic cancer; somatic mutation).|NR -> IP (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R248Q(516)|p.R248W(443)|p.R248L(63)|p.R248P(12)|p.R248G(11)|p.R248R(10)|p.0?(7)|p.N247_R248delNR(2)|p.N247_R248>KW(2)|p.M246_P250delMNRRP(2)|p.R248fs*97(2)|p.R248_P250delRRP(1)|p.N247_R249delNRR(1)|p.N247_P250delNRRP(1)|p.R248C(1)|p.G245fs*14(1)|p.N247_R248>IP(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		ATGGGCCTCCGGTTCATGCCG	0.577	R248W(CAS1_CENTRAL_NERVOUS_SYSTEM)|R248W(COLO680N_OESOPHAGUS)|R248W(SW837_LARGE_INTESTINE)|R248W(KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248W(RD_SOFT_TISSUE)|R248W(VCAP_PROSTATE)|R248W(JIMT1_BREAST)|R248W(GCT_SOFT_TISSUE)|R248W(DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248W(786O_KIDNEY)|R248W(COLO320_LARGE_INTESTINE)|R248W(LXF289_LUNG)|R248W(LUDLU1_LUNG)|R248W(MIAPACA2_PANCREAS)|R248W(HCC2157_BREAST)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			34	17					0	0	0.059317	0	0
DNAH2	146754	broad.mit.edu	37	17	7683947	7683947	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:7683947G>A	uc002giu.1	+	37	5865	c.5851_splice	c.e37-1	p.I1951_splice		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3						ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TGGTTCCCCAGATTCTGGCCA	0.542													80	50					0	0	0.048971	0	0
PIK3R6	146850	broad.mit.edu	37	17	8738700	8738700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:8738700C>T	uc002glq.1	-	8	775	c.535G>A	c.(535-537)GCC>ACC	p.A179T	PIK3R6_uc002glr.1_RNA|PIK3R6_uc002gls.1_RNA	NM_001010855	NP_001010855	Q5UE93	PI3R6_HUMAN	phosphoinositide-3-kinase, regulatory subunit 6	179					platelet activation	cytosol					0						TGCGCCTGGGCCGCCTCGATC	0.652													17	9					0	0	0.038395	0	0
MYH4	4622	broad.mit.edu	37	17	10369674	10369674	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:10369674G>A	uc002gmn.2	-	4	375	c.264C>T	c.(262-264)ATC>ATT	p.I88I	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	88	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CCATGTCCTCGATCTTGTCAT	0.438													50	36					0	0	0.048971	0	0
MYH1	4619	broad.mit.edu	37	17	10404526	10404526	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:10404526G>A	uc002gmo.2	-	27	3733	c.3639C>T	c.(3637-3639)AAC>AAT	p.N1213N	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1213	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CTCGCTGCAGGTTGTCAATCT	0.557													52	19					0	0	0.048971	0	0
DNAH9	1770	broad.mit.edu	37	17	11603201	11603201	+	Splice_Site	SNP	G	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:11603201G>T	uc002gne.2	+	23	5093	c.5025_splice	c.e23+1	p.Q1675_splice	DNAH9_uc010coo.2_Splice_Site_p.Q969_splice	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2						cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CAGCGGGCAGGTAACACAGTA	0.507													21	13					1.87028e-06	1.91143e-06	0.062417	1	0
FLJ36000	284124	broad.mit.edu	37	17	21904200	21904200	+	RNA	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:21904200G>A	uc002gza.2	+	1		c.139G>A				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						aggcctgccaggacggtgttc	0													3	25					0	0	0.004672	0	0
NOS2	4843	broad.mit.edu	37	17	26089931	26089931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:26089931G>A	uc002gzu.2	-	22	2957	c.2693C>T	c.(2692-2694)TCC>TTC	p.S898F		NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	898	FAD-binding FR-type.				arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	GGGGAGCTGGGAAAGCAGGAA	0.597													11	9					0	0	0.080935	0	0
TMEM132E	124842	broad.mit.edu	37	17	32953158	32953158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:32953158C>T	uc002hif.2	+	2	408	c.80C>T	c.(79-81)TCC>TTC	p.S27F		NM_207313	NP_997196	Q6IEE7	T132E_HUMAN	transmembrane protein 132E precursor	27	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(366;0.231)		TCTGGCCGCTCCCACCCGGCC	0.736													4	1					0	0	0.021553	0	0
AP2B1	163	broad.mit.edu	37	17	33954524	33954524	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:33954524G>T	uc002hjr.2	+	8	1248	c.1059G>T	c.(1057-1059)CAG>CAT	p.Q353H	AP2B1_uc002hjq.2_Missense_Mutation_p.Q353H|AP2B1_uc010wci.1_Missense_Mutation_p.Q315H|AP2B1_uc002hjs.2_Missense_Mutation_p.Q296H|AP2B1_uc002hjt.2_Missense_Mutation_p.Q353H|AP2B1_uc010ctv.2_Missense_Mutation_p.Q353H|AP2B1_uc010wcj.1_Missense_Mutation_p.Q90H	NM_001282	NP_001273	P63010	AP2B1_HUMAN	adaptor-related protein complex 2, beta 1	353					axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|coated pit|cytosol|endocytic vesicle membrane|plasma membrane	clathrin binding|protein transporter activity			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		ACATTGCTCAGGTCAGACTTT	0.383													20	11					3.8784e-16	4.01676e-16	0.062417	1	0
LYZL6	57151	broad.mit.edu	37	17	34263791	34263791	+	Silent	SNP	C	T	T	rs9604		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:34263791C>T	uc002hkj.1	-	3	495	c.345G>A	c.(343-345)AGG>AGA	p.R115R	LYZL6_uc002hkk.1_Silent_p.R115R	NM_020426	NP_065159	O75951	LYZL6_HUMAN	lysozyme-like 6 precursor	115					cell wall macromolecule catabolic process	extracellular region	lysozyme activity				0				UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CGGACACAATCCTTTTTGCGC	0.562													33	29					0	0	0.098360	0	0
LYZL6	57151	broad.mit.edu	37	17	34263826	34263826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:34263826G>A	uc002hkj.1	-	3	460	c.310C>T	c.(310-312)CCC>TCC	p.P104S	LYZL6_uc002hkk.1_Missense_Mutation_p.P104S	NM_020426	NP_065159	O75951	LYZL6_HUMAN	lysozyme-like 6 precursor	104					cell wall macromolecule catabolic process	extracellular region	lysozyme activity				0				UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AGAAGGTTGGGATTCAGCAGA	0.572													23	25					0	0	0.034045	0	0
RAPGEFL1	51195	broad.mit.edu	37	17	38348926	38348926	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:38348926C>T	uc010cwu.1	+	12	1597	c.1107C>T	c.(1105-1107)TTC>TTT	p.F369F	RAPGEFL1_uc010wfd.1_Silent_p.F305F	NM_016339	NP_057423	Q9UHV5	RPGFL_HUMAN	Rap guanine nucleotide exchange factor	575	Ras-GEF.				G-protein coupled receptor protein signaling pathway|nervous system development|small GTPase mediated signal transduction	intracellular|membrane fraction	guanyl-nucleotide exchange factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TGATTCCCTTCGTGCCTCTGA	0.532													98	46					0	0	0.048971	0	0
ITGA2B	3674	broad.mit.edu	37	17	42457168	42457168	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:42457168G>A	uc002igt.1	-	18	1799	c.1767C>T	c.(1765-1767)TTC>TTT	p.F589F	ITGA2B_uc002igu.1_Silent_p.F70F	NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	589	Extracellular (Potential).				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	GCTTGTCCCGGAAGTCTGCCT	0.607													50	30					0	0	0.048971	0	0
GJC1	10052	broad.mit.edu	37	17	42882355	42882355	+	Silent	SNP	A	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:42882355A>G	uc002ihj.2	-	2	1342	c.831T>C	c.(829-831)TAT>TAC	p.Y277Y	GJC1_uc002ihk.2_Silent_p.Y277Y|GJC1_uc002ihl.2_Silent_p.Y277Y|GJC1_uc010czx.2_Silent_p.Y277Y|GJC1_uc010czy.1_Silent_p.Y138Y	NM_005497	NP_005488	P36383	CXG1_HUMAN	connexin 45	277	Cytoplasmic (Potential).				cellular membrane organization|gap junction assembly|muscle contraction|synaptic transmission|transport	connexon complex|integral to membrane					0		Prostate(33;0.0959)				AAGTGAAAGGATAATTATAAG	0.443													85	32					0	0	0.048971	0	0
EFTUD2	9343	broad.mit.edu	37	17	42940269	42940269	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:42940269G>A	uc002ihn.2	-	16	1680	c.1419C>T	c.(1417-1419)CCC>CCT	p.P473P	EFTUD2_uc010wje.1_Silent_p.P438P|EFTUD2_uc010wjf.1_Silent_p.P463P	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	473						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				GGCACATCAGGGGGCCCTGGA	0.567													34	28					0	0	0.086207	0	0
C17orf46	124783	broad.mit.edu	37	17	43332509	43332509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:43332509G>A	uc002iis.1	-	4	1136	c.1040C>T	c.(1039-1041)TCC>TTC	p.S347F	LOC100133991_uc010dah.2_Intron|C17orf46_uc010wjk.1_Missense_Mutation_p.S326F	NM_152343	NP_689556	Q96LK8	CQ046_HUMAN	hypothetical protein LOC124783	347										large_intestine(1)|ovary(1)	2						CAGCAGAGGGGACGTGGCTGG	0.587													23	18					0	0	0.076483	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48601104	48601104	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:48601104C>T	uc010wmr.1	+	12	1885	c.1723C>T	c.(1723-1725)CTG>TTG	p.L575L	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	538					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			CGCGGTCTCCCTGACCCAGGA	0.527													26	16					0	0	0.041601	0	0
KIF2B	84643	broad.mit.edu	37	17	51902066	51902066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:51902066G>A	uc002iua.2	+	1	1828	c.1672G>A	c.(1672-1674)GGA>AGA	p.G558R	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	558					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CTATCCGATTGGACATGAGGC	0.383													37	28					0	0	0.086207	0	0
FAM104A	84923	broad.mit.edu	37	17	71223381	71223381	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:71223381C>T	uc002jji.3	-	2	332	c.244G>A	c.(244-246)GAA>AAA	p.E82K	FAM104A_uc002jjj.3_Missense_Mutation_p.E82K	NM_032837	NP_116226	Q969W3	F104A_HUMAN	hypothetical protein LOC84923 isoform 2	82											0			LUSC - Lung squamous cell carcinoma(166;0.197)			TTGTCTTCTTCGTTGCCATTC	0.423													60	100					0	0	0.048971	0	0
GPR142	350383	broad.mit.edu	37	17	72368514	72368514	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:72368514G>A	uc010wqy.1	+	4	1164	c.1164G>A	c.(1162-1164)CGG>CGA	p.R388R	GPR142_uc010wqx.1_Silent_p.R300R	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	388	Extracellular (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CTGTCCACCGGGACTGGAGGG	0.612													42	125					0	0	0.048971	0	0
USH1G	124590	broad.mit.edu	37	17	72915799	72915799	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:72915799C>T	uc002jme.1	-	2	1315	c.1132G>A	c.(1132-1134)GAT>AAT	p.D378N	USH1G_uc010wro.1_Missense_Mutation_p.D275N	NM_173477	NP_775748	Q495M9	USH1G_HUMAN	Usher syndrome 1G protein	378					equilibrioception|photoreceptor cell maintenance|sensory perception of sound	actin cytoskeleton				skin(2)	2	all_lung(278;0.172)|Lung NSC(278;0.207)					AAGCCTAAATCGAGCTCATCC	0.657													35	46					0	0	0.054565	0	0
EVPL	2125	broad.mit.edu	37	17	74003914	74003914	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:74003914G>A	uc002jqi.2	-	22	5600	c.5372C>T	c.(5371-5373)TCC>TTC	p.S1791F	EVPL_uc010wss.1_Missense_Mutation_p.S1813F|EVPL_uc010wst.1_Missense_Mutation_p.S1261F	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1791	Globular 2.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						AGAGCCGATGGAGAGTGAGGA	0.597													35	43					0	0	0.059317	0	0
ARHGDIA	396	broad.mit.edu	37	17	79827107	79827107	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:79827107G>A	uc002kbp.2	-	4	396	c.357C>T	c.(355-357)AAC>AAT	p.N119N	ARHGDIA_uc002kjk.1_5'UTR|ARHGDIA_uc002kbq.2_Silent_p.N119N|ARHGDIA_uc002kbr.2_Silent_p.N119N|ARHGDIA_uc002kbs.1_Intron|ARHGDIA_uc002kbt.1_Silent_p.N119N|ARHGDIA_uc010dig.1_RNA	NM_004309	NP_004300	P52565	GDIR1_HUMAN	Rho GDP dissociation inhibitor (GDI) alpha	119					anti-apoptosis|cellular component movement|negative regulation of axonogenesis|negative regulation of cell adhesion|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis|regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytoskeleton|cytosol	GTPase activator activity|identical protein binding|Rho GDP-dissociation inhibitor activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			CTATCTCTCGGTTAACCTGCA	0.642													25	36					0	0	0.083992	0	0
HEXDC	284004	broad.mit.edu	37	17	80382279	80382279	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr17:80382279C>T	uc002kew.2	+	2	145	c.94C>T	c.(94-96)CTG>TTG	p.L32L	HEXDC_uc002kev.3_Silent_p.L32L|HEXDC_uc010diq.2_Silent_p.L32L			Q8WVB3	HEXDC_HUMAN	SubName: Full=Hexosaminidase (Glycosyl hydrolase family 20, catalytic domain) containing, isoform CRA_c; SubName: Full=Hexosaminidase D;	32					carbohydrate metabolic process	cytoplasm|nucleus	beta-N-acetylhexosaminidase activity|cation binding			ovary(1)|skin(1)	2	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.0143)|BRCA - Breast invasive adenocarcinoma(99;0.0369)			GATTTTTCCTCTGTTCCGTGC	0.572													21	111					0	0	0.069288	0	0
LAMA3	3909	broad.mit.edu	37	18	21519301	21519301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr18:21519301C>T	uc002kuq.2	+	68	9063	c.8977C>T	c.(8977-8979)CCC>TCC	p.P2993S	LAMA3_uc002kur.2_Missense_Mutation_p.P2937S|LAMA3_uc002kus.3_Missense_Mutation_p.P1384S|LAMA3_uc002kut.3_Missense_Mutation_p.P1328S	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2993	Laminin G-like 4.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGGGGACATTCCCACCAGCCA	0.557													82	64					0	0	0.048971	0	0
KIAA0427	9811	broad.mit.edu	37	18	46284619	46284619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr18:46284619C>T	uc002ldc.2	+	8	1199	c.914C>T	c.(913-915)CCG>CTG	p.P305L	KIAA0427_uc002ldd.2_Missense_Mutation_p.P305L|KIAA0427_uc002lde.3_5'Flank	NM_014772	NP_055587	O43310	CTIF_HUMAN	hypothetical protein LOC9811 isoform 1	305	Interaction with NCBP1/CBP80.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational initiation	perinuclear region of cytoplasm	protein binding				0						ACCCTGGCCCCGGTGGCTTCT	0.637													61	28					0	0	0.048971	0	0
RNF152	220441	broad.mit.edu	37	18	59483414	59483414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr18:59483414G>A	uc002lih.1	-	2	695	c.283C>T	c.(283-285)CCC>TCC	p.P95S		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	95					apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				CCATTGCTGGGAAGTTTGATG	0.647													31	17					0	0	0.041601	0	0
SERPINB4	6318	broad.mit.edu	37	18	61326644	61326644	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr18:61326644G>A	uc002ljg.2	-	3	366	c.340C>T	c.(340-342)CTA>TTA	p.L114L	SERPINB3_uc002lji.2_Silent_p.L114L|SERPINB3_uc010dqa.2_Silent_p.L114L|SERPINB3_uc010dqb.2_Silent_p.L114L			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	114					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						TGTAAAAATAGATACGTTTTT	0.423													34	16					0	0	0.092188	0	0
RTTN	25914	broad.mit.edu	37	18	67843921	67843921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr18:67843921G>A	uc002lkp.2	-	11	1534	c.1466C>T	c.(1465-1467)CCT>CTT	p.P489L	RTTN_uc002lko.2_RNA|RTTN_uc010xfb.1_5'UTR|RTTN_uc002lkq.1_Missense_Mutation_p.P489L	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	489							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				CTTTTCAACAGGGAGAAGCGT	0.423													32	24					0	0	0.069456	0	0
ELANE	1991	broad.mit.edu	37	19	855770	855770	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:855770G>A	uc002lqb.2	+	4	611	c.573G>A	c.(571-573)AGG>AGA	p.R191R		NM_001972	NP_001963	P08246	ELNE_HUMAN	neutrophil elastase preproprotein	191	Peptidase S1.		R -> Q (in CH; loss of interaction with NOTCH2NL and loss of NOTCH2NL and NOTCH2 proteolytic cleavage).|Missing (in GFI1).		cellular calcium ion homeostasis|negative regulation of chemokine biosynthetic process|negative regulation of chemotaxis|negative regulation of inflammatory response|negative regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of MAP kinase activity|positive regulation of smooth muscle cell proliferation|protein catabolic process|proteolysis|response to UV	cell surface|extracellular region|stored secretory granule	bacterial cell surface binding|cytokine binding|heparin binding			pancreas(1)	1					Alpha-1-proteinase inhibitor(DB00058)|Filgrastim(DB00099)|Pegfilgrastim(DB00019)	CTCTCGTGAGGGGCCGGCAGG	0.677									Kostmann_syndrome				14	55					0	0	0.033300	0	0
AES	166	broad.mit.edu	37	19	3061173	3061173	+	Missense_Mutation	SNP	T	G	G	rs1126519		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:3061173T>G	uc002lwy.1	-	2	283	c.110A>C	c.(109-111)CAA>CCA	p.Q37P	AES_uc002lwz.1_Missense_Mutation_p.Q37P|AES_uc002lxa.1_5'UTR|AES_uc002lxb.1_Missense_Mutation_p.Q104P|AES_uc002lxc.2_Missense_Mutation_p.Q104P	NM_001130	NP_001121	Q08117	AES_HUMAN	amino-terminal enhancer of split isoform b	37	Gln-rich (Q domain).				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of response to cytokine stimulus|negative regulation of transcription from RNA polymerase II promoter|organ morphogenesis|response to interleukin-1|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTACTGAGCTTGCAGTAGCTG	0.607													17	142					0	0	0.043863	0	0
PIAS4	51588	broad.mit.edu	37	19	4024107	4024107	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:4024107C>T	uc002lzg.2	+	3	538	c.528C>T	c.(526-528)ATC>ATT	p.I176I		NM_015897	NP_056981	Q8N2W9	PIAS4_HUMAN	protein inhibitor of activated STAT, 4	176	PINIT.				positive regulation of protein sumoylation|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|PML body	DNA binding|SUMO ligase activity|ubiquitin protein ligase binding|zinc ion binding			pancreas(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGAGTTGATCCGGAACTCCA	0.637													7	44					0	0	0.029380	0	0
PLIN4	729359	broad.mit.edu	37	19	4510580	4510580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:4510580C>T	uc002mar.1	-	3	3350	c.3350G>A	c.(3349-3351)AGG>AAG	p.R1117K	PLIN4_uc010dub.1_Missense_Mutation_p.R141K	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	1117						lipid particle|plasma membrane					0						CGTGTCCTCCCTGCCTGGGGC	0.662													11	12					0	0	0.080935	0	0
LRG1	116844	broad.mit.edu	37	19	4538414	4538414	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:4538414G>A	uc002mau.2	-	2	593	c.582C>T	c.(580-582)GAC>GAT	p.D194D	PLIN5_uc002mat.1_Intron	NM_052972	NP_443204	P02750	A2GL_HUMAN	leucine-rich alpha-2-glycoprotein 1 precursor	194	LRR 5.					extracellular region|membrane				ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		TCTCCCCAAGGTCAAGGGTGC	0.597													64	174					0	0	0.048971	0	0
ARHGEF18	23370	broad.mit.edu	37	19	7523559	7523559	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:7523559C>T	uc002mgi.2	+	9	2032	c.1779C>T	c.(1777-1779)ATC>ATT	p.I593I	ARHGEF18_uc010xjm.1_Silent_p.I435I|ARHGEF18_uc002mgh.2_Silent_p.I435I|ARHGEF18_uc002mgj.1_Silent_p.I236I	NM_001130955	NP_001124427	Q6ZSZ5	ARHGI_HUMAN	Rho/Rac guanine nucleotide exchange factor 18	593	PH.				actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell shape|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1		Renal(5;0.0902)				TGGCCCACATCCAAAGGGCTG	0.582													8	23					0	0	0.047766	0	0
STXBP2	6813	broad.mit.edu	37	19	7712250	7712250	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:7712250G>C	uc002mha.3	+	18	1594	c.1549G>C	c.(1549-1551)GGT>CGT	p.G517R	STXBP2_uc002mhb.3_Missense_Mutation_p.G514R|STXBP2_uc010dvj.2_RNA|STXBP2_uc010xjr.1_Missense_Mutation_p.G528R|STXBP2_uc010dvk.2_Missense_Mutation_p.G485R|STXBP2_uc002mhc.3_Missense_Mutation_p.G253R|STXBP2_uc002mhe.1_3'UTR	NM_006949	NP_008880	Q15833	STXB2_HUMAN	syntaxin binding protein 2 isoform a	517					leukocyte mediated cytotoxicity|neutrophil degranulation|protein transport|regulation of mast cell degranulation|vesicle docking involved in exocytosis	azurophil granule|cytolytic granule|cytosol|specific granule|tertiary granule	syntaxin-3 binding			central_nervous_system(1)	1						TGCCCGCTTCGGTCACTGGCA	0.637													8	82					0	0	0.047766	0	0
C19orf59	199675	broad.mit.edu	37	19	7743386	7743386	+	Missense_Mutation	SNP	C	T	T	rs139191722		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:7743386C>T	uc002mhh.1	+	5	408	c.383C>T	c.(382-384)TCC>TTC	p.S128F	TRAPPC5_uc002mhi.1_5'Flank|TRAPPC5_uc002mhj.1_5'Flank|TRAPPC5_uc002mhk.1_5'Flank	NM_174918	NP_777578	Q8IX19	MCEM1_HUMAN	mast cell-expressed membrane protein 1	128	Extracellular (Potential).					integral to membrane		p.S128F(1)		skin(1)	1						GTCTCAAACTCCGTACAAGCA	0.547											OREG0025208	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	56					0	0	0.105934	0	0
OR2Z1	284383	broad.mit.edu	37	19	8842040	8842040	+	Missense_Mutation	SNP	C	T	T	rs140873536		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:8842040C>T	uc010xkg.1	+	1	650	c.650C>T	c.(649-651)TCC>TTC	p.S217F		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						ATCGCCACCTCCTACGGCCAC	0.592													35	42					0	0	0.074837	0	0
MUC16	94025	broad.mit.edu	37	19	9020060	9020060	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:9020060C>T	uc002mkp.2	-	21	37639	c.37435G>A	c.(37435-37437)GAG>AAG	p.E12479K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12481	Extracellular (Potential).|SEA 3.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGCTCAGCTCCCAGTACAGC	0.552													42	153					0	0	0.111260	0	0
MUC16	94025	broad.mit.edu	37	19	9045944	9045944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:9045944G>A	uc002mkp.2	-	5	35891	c.35687C>T	c.(35686-35688)TCC>TTC	p.S11896F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11898	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GACAGCAGGGGAAACAGTCAG	0.488													60	68					0	0	0.048971	0	0
MUC16	94025	broad.mit.edu	37	19	9050170	9050170	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:9050170C>T	uc002mkp.2	-	5	31665	c.31461G>A	c.(31459-31461)AAG>AAA	p.K10487K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10489	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGAAGTGGTCTTCAGAGCTG	0.512													183	176					0	0	0.048971	0	0
MUC16	94025	broad.mit.edu	37	19	9089011	9089011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:9089011G>A	uc002mkp.2	-	1	3008	c.2804C>T	c.(2803-2805)GCT>GTT	p.A935V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	935	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTAGGAAGAGCTGAACCAGT	0.493													19	57					0	0	0.055883	0	0
C3P1	388503	broad.mit.edu	37	19	10157839	10157839	+	RNA	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:10157839C>T	uc010dwx.1	+	10		c.1390C>T				NR_027300				Synthetic construct DNA, clone: pF1KB7402, Homo sapiens LOC388503 gene, without stop codon, in Flexi system.												0						GTGCCAGATTCCATCACCACG	0.537													203	188					0	0	0.048971	0	0
WDR83	84292	broad.mit.edu	37	19	12780853	12780853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:12780853C>T	uc002mue.3	+	4	501	c.166C>T	c.(166-168)CGG>TGG	p.R56W	WDR83_uc002muc.2_RNA|C19orf56_uc002mud.2_5'Flank|WDR83_uc010dyw.2_Missense_Mutation_p.R56W	NM_001099737	NP_001093207	Q9BRX9	WDR83_HUMAN	mitogen-activated protein kinase organizer 1	56	WD 1.				nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|cytoplasm				lung(1)|breast(1)	2						GAACCCGCTTCGGGGGACGCT	0.677													39	32					0	0	0.069456	0	0
ASNA1	439	broad.mit.edu	37	19	12856465	12856465	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:12856465G>A	uc002muv.2	+	4	515	c.501G>A	c.(499-501)ACG>ACA	p.T167T	ASNA1_uc002muw.2_Silent_p.T166T	NM_004317	NP_004308	O43681	ASNA_HUMAN	arsA arsenite transporter, ATP-binding, homolog	167					response to arsenic-containing substance	endoplasmic reticulum|nucleolus|soluble fraction	arsenite-transporting ATPase activity|ATP binding|metal ion binding			ovary(2)	2					Adenosine triphosphate(DB00171)	TATTTGACACGGCACCCACGG	0.627													17	66					0	0	0.038395	0	0
RTBDN	83546	broad.mit.edu	37	19	12936603	12936603	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:12936603A>C	uc002mvi.2	-	6	737	c.607T>G	c.(607-609)TCC>GCC	p.S203A	RTBDN_uc002mvh.1_3'UTR|RTBDN_uc002mvj.2_Missense_Mutation_p.S235A	NM_001080997	NP_001074466	Q9BSG5	RTBDN_HUMAN	retbindin isoform 1	203						extracellular region					0						GAACGCCGGGAGGGAGCTTCC	0.711											OREG0025275	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	29					0	0	0.047766	0	0
CACNA1A	773	broad.mit.edu	37	19	13325352	13325352	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:13325352G>A	uc010dze.2	-	39	6041	c.5805C>T	c.(5803-5805)TCC>TCT	p.S1935S	CACNA1A_uc010xnd.1_Silent_p.S640S|CACNA1A_uc002mwx.3_Silent_p.S640S|CACNA1A_uc010dzc.2_Silent_p.S1460S|CACNA1A_uc002mwy.3_Silent_p.S1934S|CACNA1A_uc002mwv.3_Silent_p.S451S	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1935	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GCGTCTTCTGGGACAGATTGG	0.582													12	15					0	0	0.024245	0	0
GIPC1	10755	broad.mit.edu	37	19	14593660	14593661	+	Missense_Mutation	DNP	GG	CA	CA			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:14593660_14593661GG>CA	uc002myt.2	-	4	398_399	c.128_129CC>TG	c.(127-129)CCC>CTG	p.P43L	GIPC1_uc002myu.2_Missense_Mutation_p.P43L|GIPC1_uc002myv.2_Intron|GIPC1_uc002myw.2_Intron|GIPC1_uc002myx.2_Missense_Mutation_p.P43L|GIPC1_uc002myy.2_Intron	NM_005716	NP_005707	O14908	GIPC1_HUMAN	regulator of G-protein signalling 19 interacting	43					endothelial cell migration|G-protein coupled receptor protein signaling pathway|glutamate secretion|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|protein targeting|regulation of protein stability|regulation of synaptic plasticity|synaptic transmission	cell cortex|dendritic shaft|dendritic spine|membrane fraction|soluble fraction|synaptic vesicle|vesicle membrane	actin binding|myosin binding|protein homodimerization activity|receptor binding				0						AGCCCATTTGGGGGCCCCCCGA	0.723													4	7					0	0	0.004672	0	0
CLEC17A	388512	broad.mit.edu	37	19	14705455	14705455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:14705455G>A	uc010dzn.1	+	6	399	c.322G>A	c.(322-324)GAG>AAG	p.E108K	CLEC17A_uc002mzh.1_Missense_Mutation_p.E91K|CLEC17A_uc010xnt.1_RNA|CLEC17A_uc010xnu.1_Missense_Mutation_p.E108K|CLEC17A_uc010dzo.1_Missense_Mutation_p.E108K			Q6ZS10	CL17A_HUMAN	SubName: Full=CLEC17A protein;	108	Cytoplasmic (Potential).					cell surface|integral to membrane	fucose binding|mannose binding|metal ion binding|receptor activity				0						AAAGGAAACAGAGAAACCCCC	0.572													26	25					0	0	0.041601	0	0
EMR3	84658	broad.mit.edu	37	19	14772913	14772913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:14772913G>A	uc002mzi.3	-	4	365	c.217C>T	c.(217-219)CCA>TCA	p.P73S	EMR3_uc010dzp.2_Intron|EMR3_uc010xnv.1_Intron	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	73	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						CTATAGGGTGGTGTACATTCA	0.294													22	30					0	0	0.083992	0	0
CYP4F3	4051	broad.mit.edu	37	19	15760868	15760868	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:15760868G>A	uc002nbj.2	+	7	843	c.793G>A	c.(793-795)GAC>AAC	p.D265N	CYP4F3_uc010xok.1_Missense_Mutation_p.D265N|CYP4F3_uc010xol.1_Missense_Mutation_p.D265N|CYP4F3_uc010xom.1_Missense_Mutation_p.D116N|CYP4F3_uc002nbk.2_Missense_Mutation_p.D265N|CYP4F3_uc010xon.1_5'UTR	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	265					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						CCTGGTGCACGACTTCACAGA	0.562													36	127					0	0	0.069456	0	0
CYP4F12	66002	broad.mit.edu	37	19	15807813	15807813	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:15807813C>T	uc002nbl.2	+	13	1554	c.1493C>T	c.(1492-1494)CCC>CTC	p.P498L		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					CACACTGAGCCCCGCAGGAAG	0.612													13	72					0	0	0.020292	0	0
CYP4F2	8529	broad.mit.edu	37	19	16000310	16000310	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:16000310G>A	uc002nbs.1	-	7	891	c.841C>T	c.(841-843)CAG>TAG	p.Q281*	CYP4F2_uc010xot.1_Nonsense_Mutation_p.Q132*|CYP4F2_uc010xou.1_Nonsense_Mutation_p.Q132*	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	281					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						TCAACACCCTGGCTAGGGAGA	0.577													18	79					0	0	0.049695	0	0
CYP4F2	8529	broad.mit.edu	37	19	16006320	16006320	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:16006320G>A	uc002nbs.1	-	3	389	c.339C>T	c.(337-339)GCC>GCT	p.A113A	CYP4F2_uc010xot.1_5'UTR|CYP4F2_uc010xou.1_Intron	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	113					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						TGGTACCTGAGGCGTTGATGA	0.607													103	124					0	0	0.048971	0	0
LRP3	4037	broad.mit.edu	37	19	33698225	33698225	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:33698225C>T	uc010edh.2	+	7	2150	c.2057C>T	c.(2056-2058)TCG>TTG	p.S686L	LRP3_uc002nuk.3_Missense_Mutation_p.S560L	NM_002333	NP_002324	O75074	LRP3_HUMAN	low density lipoprotein receptor-related protein	686	Cytoplasmic (Potential).				receptor-mediated endocytosis	coated pit|integral to membrane	receptor activity			pancreas(2)|ovary(1)	3	Esophageal squamous(110;0.137)					CCCTTGCCCTCGGGCCTGCGA	0.701													11	10					0	0	0.069234	0	0
LSR	51599	broad.mit.edu	37	19	35749940	35749940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:35749940G>A	uc002nyl.2	+	3	914	c.691G>A	c.(691-693)GAG>AAG	p.E231K	LSR_uc002nym.2_Missense_Mutation_p.E231K|LSR_uc002nyn.2_Missense_Mutation_p.E231K|LSR_uc002nyo.2_Missense_Mutation_p.E231K|LSR_uc010xsr.1_Intron|LSR_uc002nyp.2_Missense_Mutation_p.E194K	NM_205834	NP_991403	Q86X29	LSR_HUMAN	lipolysis stimulated lipoprotein receptor	231	Extracellular (Potential).|Ig-like V-type.				embryo development|liver development	chylomicron|integral to membrane|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle	receptor activity				0	all_lung(56;3.91e-09)|Lung NSC(56;5.64e-09)|Esophageal squamous(110;0.162)		Epithelial(14;1.33e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.29e-18)|all cancers(14;7.11e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			GGGGAACAATGAGGCCTACGC	0.607													48	38					0	0	0.048971	0	0
NPHS1	4868	broad.mit.edu	37	19	36333030	36333030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:36333030G>A	uc002oby.2	-	19	2659	c.2659C>T	c.(2659-2661)CCC>TCC	p.P887S	NPHS1_uc010eem.1_5'Flank	NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	887	Ig-like C2-type 8.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GCTCACCTGGGATCTTGGAGA	0.592													13	20					0	0	0.105934	0	0
ZNF585A	199704	broad.mit.edu	37	19	37644012	37644012	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:37644012G>A	uc002ofo.1	-	5	1020	c.789C>T	c.(787-789)ATC>ATT	p.I263I	ZNF585A_uc002ofm.1_Silent_p.I208I|ZNF585A_uc002ofn.1_Silent_p.I208I	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	263	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CGCCTGTATGGATTTTCTGAT	0.428													84	73					0	0	0.048971	0	0
SPINT2	10653	broad.mit.edu	37	19	38779791	38779791	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:38779791G>A	uc002ohr.1	+	4	682	c.351G>A	c.(349-351)CAG>CAA	p.Q117Q	SPINT2_uc002ohs.1_Silent_p.Q60Q	NM_021102	NP_066925	O43291	SPIT2_HUMAN	serine protease inhibitor, Kunitz type, 2	117	Extracellular (Potential).				cellular component movement	cytoplasm|extracellular region|integral to membrane|soluble fraction	serine-type endopeptidase inhibitor activity				0	all_cancers(60;6.83e-07)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CCAGAAGGCAGGATTCTGAAG	0.413													23	70					0	0	0.091800	0	0
FCGBP	8857	broad.mit.edu	37	19	40364436	40364436	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:40364436C>T	uc002omp.3	-	31	14215	c.14207_splice	c.e31-1	p.P4736_splice		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor							extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CACTGCAAGGCTGTGGGGACA	0.632													9	31					0	0	0.047766	0	0
HIPK4	147746	broad.mit.edu	37	19	40886607	40886607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:40886607C>T	uc002onp.2	-	3	1576	c.1291G>A	c.(1291-1293)GAC>AAC	p.D431N		NM_144685	NP_653286	Q8NE63	HIPK4_HUMAN	homeodomain interacting protein kinase 4	431						cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2			Lung(22;4.95e-05)|LUSC - Lung squamous cell carcinoma(20;0.000292)			AGACTCAGGTCATCCAGCTGG	0.627													73	81					0	0	0.048971	0	0
CCDC97	90324	broad.mit.edu	37	19	41822684	41822684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:41822684C>T	uc002oqg.2	+	2	564	c.442C>T	c.(442-444)CGC>TGC	p.R148C	CYP2F1_uc010xvw.1_Intron	NM_052848	NP_443080	Q96F63	CCD97_HUMAN	coiled-coil domain containing 97	148											0						TGCCCGGCCCCGCACCCTGCG	0.677													29	37					0	0	0.064281	0	0
ZNF155	7711	broad.mit.edu	37	19	44501512	44501512	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:44501512C>T	uc002oxy.1	+	5	1708	c.1503C>T	c.(1501-1503)GAC>GAT	p.D501D	ZNF155_uc002oxz.1_Silent_p.D501D|ZNF155_uc010xwt.1_Silent_p.D512D|uc010ejc.1_RNA	NM_003445	NP_003436	Q12901	ZN155_HUMAN	zinc finger protein 155	501	C2H2-type 12; degenerate.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2		Prostate(69;0.0352)				ACCGTAAAGACCAGCCGAGAG	0.423													41	56					0	0	0.098360	0	0
MARK4	57787	broad.mit.edu	37	19	45762272	45762272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:45762272C>T	uc002pbb.1	+	2	82	c.77C>T	c.(76-78)TCC>TTC	p.S26F	MARK4_uc002paz.1_Intron|MARK4_uc002pba.1_Missense_Mutation_p.S26F			Q96L34	MARK4_HUMAN	RecName: Full=MAP/microtubule affinity-regulating kinase 4;          EC=2.7.11.1; AltName: Full=MAP/microtubule affinity-regulating kinase-like 1;	26					microtubule bundle formation|nervous system development|positive regulation of programmed cell death	centrosome|neuron projection	ATP binding|gamma-tubulin binding|microtubule binding|protein serine/threonine kinase activity|tau-protein kinase activity|ubiquitin binding			central_nervous_system(2)|large_intestine(1)	3		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		AGTGGCCGCTCCTCGGACAAA	0.647													25	28					0	0	0.091800	0	0
FOXA3	3171	broad.mit.edu	37	19	46376133	46376133	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:46376133G>A	uc002pdr.2	+	2	1067	c.870G>A	c.(868-870)GGG>GGA	p.G290G		NM_004497	NP_004488	P55318	FOXA3_HUMAN	forkhead box A3	290					brain development|cellular glucose homeostasis|cellular response to starvation|chromatin modification|embryo development|endocrine pancreas development|negative regulation of cell proliferation|neural plate anterior/posterior regionalization|neuron fate specification|positive regulation of hepatocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(1)	1		Ovarian(192;0.0308)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00453)|GBM - Glioblastoma multiforme(486;0.0518)|Epithelial(262;0.236)		AGCTCCCAGGGGAGCTGAAGC	0.607													23	31					0	0	0.076483	0	0
KCNJ14	3770	broad.mit.edu	37	19	48967565	48967565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:48967565C>T	uc002pje.1	+	3	1247	c.842C>T	c.(841-843)GCC>GTC	p.A281V	KCNJ14_uc002pjf.1_Missense_Mutation_p.A281V	NM_013348	NP_037480	Q9UNX9	IRK14_HUMAN	potassium inwardly-rectifying channel J14	281	Cytoplasmic (By similarity).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000109)|all cancers(93;0.000129)|Epithelial(262;0.0081)|GBM - Glioblastoma multiforme(486;0.0222)		ATCGACTCTGCCAGTCCTCTG	0.582													9	6					0	0	0.047766	0	0
BCL2L12	83596	broad.mit.edu	37	19	50169131	50169131	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:50169131C>T	uc002ppa.2	+	1	733	c.51C>T	c.(49-51)TTC>TTT	p.F17F	IRF3_uc002pot.1_5'Flank|IRF3_uc010end.1_5'Flank|IRF3_uc002pox.1_5'Flank|IRF3_uc002poy.1_5'Flank|IRF3_uc002pou.2_5'UTR|IRF3_uc002pov.2_5'UTR|IRF3_uc002pow.2_5'UTR|IRF3_uc002poz.1_5'Flank|IRF3_uc010ene.1_5'Flank|BCL2L12_uc002ppb.2_Silent_p.F17F	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	17					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		TTTTGGGTTTCCGGCCAGAGG	0.572													18	82					0	0	0.055883	0	0
MYBPC2	4606	broad.mit.edu	37	19	50957403	50957403	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:50957403G>A	uc002psf.2	+	17	1927	c.1876G>A	c.(1876-1878)GAG>AAG	p.E626K		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	626	Ig-like C2-type 5.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		CCCCGTCGGCGAGGACGTGGC	0.627													13	15					0	0	0.105934	0	0
SHANK1	50944	broad.mit.edu	37	19	51220099	51220099	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:51220099G>A	uc002psx.1	-	1	97	c.78C>T	c.(76-78)TCC>TCT	p.S26S		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	26					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GGGAGCTGTCGGACTCTGAGC	0.731													3	9					0	0	0.014758	0	0
SIGLEC12	89858	broad.mit.edu	37	19	51995021	51995021	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:51995021G>A	uc002pwx.1	-	8	1718	c.1662C>T	c.(1660-1662)GCC>GCT	p.A554A	SIGLEC12_uc002pww.1_Silent_p.A436A|SIGLEC12_uc010eoy.1_Silent_p.A281A	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	554	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GGGAGGGGGTGGCCAGGGCTG	0.602													20	65					0	0	0.055883	0	0
ZNF600	162966	broad.mit.edu	37	19	53270003	53270003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:53270003C>T	uc002qab.3	-	3	1292	c.1006G>A	c.(1006-1008)GAC>AAC	p.D336N		NM_198457	NP_940859	Q6ZNG1	ZN600_HUMAN	zinc finger protein 600	336	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0241)|GBM - Glioblastoma multiforme(134;0.0404)		AAAGCTGTGTCACAAACCTTA	0.388													14	48					0	0	0.105934	0	0
ZNF468	90333	broad.mit.edu	37	19	53344101	53344101	+	Silent	SNP	A	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:53344101A>G	uc002qaf.2	-	4	1597	c.1446T>C	c.(1444-1446)CTT>CTC	p.L482L	ZNF468_uc002qae.2_Silent_p.L429L	NM_001008801	NP_001008801	Q5VIY5	ZN468_HUMAN	zinc finger protein ZNF468 isoform 2	482	C2H2-type 10.			L -> P (in Ref. 2; CAI56747).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0358)		GATGGATTATAAGCGATGATG	0.448													3	124					0	0	0.004672	0	0
ZNF845	91664	broad.mit.edu	37	19	53856127	53856127	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:53856127C>T	uc010ydv.1	+	4	2316	c.2199C>T	c.(2197-2199)TCC>TCT	p.S733S	ZNF845_uc010ydw.1_Silent_p.S733S	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	733	C2H2-type 19.			Missing (in Ref. 1; BAG58121).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGAAGTCATCCCTTACATGCC	0.408													19	47					0	0	0.049695	0	0
MIR524	574478	broad.mit.edu	37	19	54214303	54214303	+	RNA	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:54214303G>A	hsa-mir-524|MI0003160	+			c.48G>A			MIR517A_hsa-mir-517a|MI0003161_5'Flank|MIR519D_hsa-mir-519d|MI0003162_5'Flank																	0						TTGTCCAAAGGAAAAGAAGGC	0.433													25	67					0	0	0.083992	0	0
LILRA6	79168	broad.mit.edu	37	19	54744939	54744939	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:54744939C>T	uc002qeu.1	-	5	847	c.723G>A	c.(721-723)CTG>CTA	p.L241L	LILRB3_uc002qeh.1_Intron|LILRB3_uc002qeg.1_Intron|LILRB3_uc002qei.1_Intron|LILRA6_uc002qek.1_Silent_p.L241L|LILRB3_uc010erh.1_Intron|LILRB3_uc002qej.1_Intron|LILRA6_uc002qel.1_Silent_p.L241L|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_RNA|LILRB3_uc002qeo.1_Silent_p.L241L|LILRB3_uc002qep.1_Intron|LILRB3_uc002qeq.1_Silent_p.L241L|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_Intron|LILRA6_uc010yep.1_Silent_p.L241L|LILRA6_uc010yeq.1_Silent_p.L241L|LILRA6_uc002qet.3_RNA|LILRA6_uc002qev.1_Silent_p.L102L	NM_024318	NP_077294	Q6PI73	LIRA6_HUMAN	leukocyte immunoglobulin-like receptor,	241	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane	receptor activity			skin(2)	2	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		ACTGGAGGGTCAGGCTCTGCC	0.642													29	54					0	0	0.030593	0	0
LILRB2	10288	broad.mit.edu	37	19	54783502	54783502	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:54783502C>T	uc002qfb.2	-	5	622	c.356G>A	c.(355-357)GGA>GAA	p.G119E	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Missense_Mutation_p.G119E|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Missense_Mutation_p.G119E|LILRB2_uc010yet.1_Missense_Mutation_p.G3E|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	119	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TGGGTAGGCTCCTAGGAGAGA	0.627													31	52					0	0	0.054565	0	0
KIR3DX1	90011	broad.mit.edu	37	19	55049216	55049216	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:55049216G>A	uc010erm.2	+	2	294	c.282G>A	c.(280-282)CAG>CAA	p.Q94Q	KIR3DX1_uc010yfa.1_RNA|KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA					Homo sapiens killer cell immunoglobulin-like receptor, three domains, X1, mRNA (cDNA clone IMAGE:4849085).											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		GTCATTCACAGAATCCACCCC	0.343													42	45					0	0	0.048971	0	0
LILRA2	11027	broad.mit.edu	37	19	55086387	55086387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:55086387C>T	uc002qgg.3	+	4	631	c.542C>T	c.(541-543)TCC>TTC	p.S181F	LILRA2_uc010ern.2_Missense_Mutation_p.S181F|LILRA2_uc002qgf.2_Missense_Mutation_p.S181F|LILRA2_uc010yfe.1_Missense_Mutation_p.S181F|LILRA2_uc010yff.1_Missense_Mutation_p.S169F|LILRA2_uc010ero.2_Missense_Mutation_p.S169F|LILRA2_uc010yfg.1_Missense_Mutation_p.S181F	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	181	Extracellular (Potential).|Ig-like C2-type 2.				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		GCCATCTTCTCCGTGGGCCCC	0.567													72	77					0	0	0.048971	0	0
NLRP13	126204	broad.mit.edu	37	19	56424469	56424469	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:56424469C>T	uc010ygg.1	-	5	739	c.714G>A	c.(712-714)GGG>GGA	p.G238G		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	238	NACHT.|ATP (Potential).						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TCTTCCCAACCCCTGCCCTCC	0.512													63	99					0	0	0.048971	0	0
NLRP8	126205	broad.mit.edu	37	19	56467104	56467104	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:56467104C>T	uc002qmh.2	+	3	1751	c.1680C>T	c.(1678-1680)TTC>TTT	p.F560F	NLRP8_uc010etg.2_Silent_p.F560F	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	560						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TTTTCTTATTCGGTTTTCTGA	0.463													23	41					0	0	0.069288	0	0
ZNF835	90485	broad.mit.edu	37	19	57175432	57175432	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:57175432G>A	uc010ygo.1	-	2	1201	c.1201C>T	c.(1201-1203)CAG>TAG	p.Q401*	ZNF835_uc010ygn.1_Nonsense_Mutation_p.Q379*	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						AGGCGGTGCTGGAGGAGGTGG	0.667													18	20					0	0	0.033300	0	0
ZNF552	79818	broad.mit.edu	37	19	58319784	58319784	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:58319784A>C	uc002qqg.2	-	3	1018	c.848T>G	c.(847-849)CTC>CGC	p.L283R	ZNF587_uc002qqb.2_Intron|ZNF552_uc010yhg.1_Missense_Mutation_p.L279R	NM_024762	NP_079038	Q9H707	ZN552_HUMAN	zinc finger protein 552	283	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0259)		GTGTACAAGGAGGTGGGACTT	0.408													12	37					0	0	0.105934	0	0
ZSCAN18	65982	broad.mit.edu	37	19	58601475	58601475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr19:58601475C>T	uc002qri.2	-	2	469	c.160G>A	c.(160-162)GAA>AAA	p.E54K	ZSCAN18_uc002qrj.3_Missense_Mutation_p.E54K|ZSCAN18_uc010yhs.1_Intron|ZSCAN18_uc002qrh.2_Missense_Mutation_p.E54K|ZSCAN18_uc010yht.1_Missense_Mutation_p.E110K|ZSCAN18_uc002qrk.1_Missense_Mutation_p.E54K|ZSCAN18_uc002qrl.2_Missense_Mutation_p.E54K	NM_001145543	NP_001139015	Q8TBC5	ZSC18_HUMAN	zinc finger and SCAN domain containing 18	54	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.114)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		TAGACAAATTCCCGGAAACGC	0.677													16	31					0	0	0.043863	0	0
SNTG2	54221	broad.mit.edu	37	2	1168793	1168793	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:1168793C>T	uc002qwq.2	+	8	643	c.515C>T	c.(514-516)TCC>TTC	p.S172F	SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	172					central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		CCAGGGCCATCCAGCGACCAC	0.507													56	102					0	0	0.048971	0	0
TMEM214	54867	broad.mit.edu	37	2	27263326	27263326	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:27263326C>T	uc002ria.3	+	16	2015	c.1905C>T	c.(1903-1905)GCC>GCT	p.A635A	TMEM214_uc010yle.1_RNA|TMEM214_uc002rib.3_Silent_p.A590A	NM_017727	NP_060197	Q6NUQ4	TM214_HUMAN	transmembrane protein 214 isoform 1	635	Helical; (Potential).					integral to membrane	protein binding				0						TGCTTGAGGCCCTGGCCTGGG	0.637													45	31					0	0	0.111260	0	0
PLB1	151056	broad.mit.edu	37	2	28827570	28827570	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:28827570G>A	uc002rmb.1	+	41	2905	c.2905G>A	c.(2905-2907)GAC>AAC	p.D969N	PLB1_uc010ezj.1_Missense_Mutation_p.D958N|PLB1_uc002rme.1_Intron|PLB1_uc002rmf.1_RNA	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	969	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|3.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					CACGCAGGAGGACTTCTCTGT	0.617													14	35					0	0	0.020292	0	0
TTC27	55622	broad.mit.edu	37	2	32889429	32889429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:32889429C>T	uc002rom.2	+	6	931	c.700C>T	c.(700-702)CAT>TAT	p.H234Y	TTC27_uc010ymx.1_Missense_Mutation_p.H184Y	NM_017735	NP_060205	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	234							protein binding			central_nervous_system(1)	1						TATTCAATTCCATCTGGAATG	0.308													21	62					0	0	0.076483	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48848316	48848316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:48848316C>T	uc010yol.1	+	4	2293	c.2246C>T	c.(2245-2247)ACC>ATC	p.T749I	STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.T749I|GTF2A1L_uc002rws.1_Missense_Mutation_p.T45I|GTF2A1L_uc010yom.1_Missense_Mutation_p.T11I|GTF2A1L_uc002rwt.2_Missense_Mutation_p.T45I	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	749					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CTCTGGGAAACCAAGGTTTTG	0.353													22	18					0	0	0.069288	0	0
EHBP1	23301	broad.mit.edu	37	2	63085637	63085637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:63085637C>T	uc002sby.2	+	8	1213	c.731C>T	c.(730-732)TCC>TTC	p.S244F	EHBP1_uc010fcp.2_Intron|EHBP1_uc002sbx.2_Intron|EHBP1_uc002sbz.2_Intron|EHBP1_uc002scb.2_Intron	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1	244						cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			TCAGCCAGTTCCTCTGAAGGT	0.408									Hereditary_Prostate_Cancer				23	30					0	0	0.083992	0	0
GMCL1	64395	broad.mit.edu	37	2	70096880	70096880	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:70096880C>T	uc002sfu.2	+	12	1455	c.1248C>T	c.(1246-1248)TTC>TTT	p.F416F		NM_178439	NP_848526	Q96IK5	GMCL1_HUMAN	germ cell-less	416					cell differentiation|multicellular organismal development|spermatogenesis	nuclear matrix				ovary(3)	3						GTTTTAACTTCGGCTTCGACC	0.358													25	56					0	0	0.037714	0	0
DNAH6	1768	broad.mit.edu	37	2	84784977	84784977	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:84784977G>A	uc010fgb.2	+	11	1858	c.1721G>A	c.(1720-1722)GGA>GAA	p.G574E	DNAH6_uc002soo.2_Missense_Mutation_p.G153E|DNAH6_uc002sop.2_Missense_Mutation_p.G153E	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	574	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						AAACTTGAAGGAAAAACCTGT	0.358													47	43					0	0	0.042209	0	0
RETSAT	54884	broad.mit.edu	37	2	85576630	85576630	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:85576630G>T	uc002spd.2	-	5	1065	c.874C>A	c.(874-876)CCC>ACC	p.P292T	RETSAT_uc010fge.2_RNA|RETSAT_uc010ysm.1_Missense_Mutation_p.P231T|RETSAT_uc010fgf.2_Missense_Mutation_p.P83T	NM_017750	NP_060220	Q6NUM9	RETST_HUMAN	all-trans-13,14-dihydroretinol saturase	292					retinol metabolic process	endoplasmic reticulum membrane|nuclear outer membrane	all-trans-retinol 13,14-reductase activity|electron carrier activity			ovary(2)	2					Vitamin A(DB00162)	CCCCCTCGGGGATAAAAGCCT	0.572													33	50					7.11191e-15	7.34107e-15	0.054565	1	0
RETSAT	54884	broad.mit.edu	37	2	85577189	85577189	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:85577189A>G	uc002spd.2	-	4	964	c.773T>C	c.(772-774)GTA>GCA	p.V258A	RETSAT_uc010fge.2_RNA|RETSAT_uc010ysm.1_Missense_Mutation_p.V197A|RETSAT_uc010fgf.2_Intron	NM_017750	NP_060220	Q6NUM9	RETST_HUMAN	all-trans-13,14-dihydroretinol saturase	258					retinol metabolic process	endoplasmic reticulum membrane|nuclear outer membrane	all-trans-retinol 13,14-reductase activity|electron carrier activity			ovary(2)	2					Vitamin A(DB00162)	GTAGCTGAGTACTGCCTGGAG	0.592													16	60					0	0	0.028581	0	0
SLC9A2	6549	broad.mit.edu	37	2	103300714	103300714	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:103300714C>T	uc002tca.2	+	5	1486	c.1344C>T	c.(1342-1344)CTC>CTT	p.L448L		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	448						integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						TAGTGTTTCTCCTTCCTGCTG	0.433													24	100					0	0	0.083992	0	0
GPR45	11250	broad.mit.edu	37	2	105859346	105859346	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:105859346A>T	uc002tco.1	+	1	1147	c.1031A>T	c.(1030-1032)CAA>CTA	p.Q344L		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	344	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						CAGACCTTCCAAATCCTCCCC	0.542													12	74					0	0	0.105934	0	0
MARCO	8685	broad.mit.edu	37	2	119739072	119739072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:119739072C>T	uc002tln.1	+	9	986	c.854C>T	c.(853-855)CCA>CTA	p.P285L	MARCO_uc010yyf.1_Missense_Mutation_p.P207L	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	285	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TTCGGGAGGCCAGGCCCACCA	0.512													9	12					0	0	0.058154	0	0
SCTR	6344	broad.mit.edu	37	2	120221753	120221753	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:120221753G>A	uc002tma.2	-	6	808	c.582C>T	c.(580-582)ATC>ATT	p.I194I	SCTR_uc002tlz.2_Silent_p.I16I	NM_002980	NP_002971	P47872	SCTR_HUMAN	secretin receptor precursor	194	Helical; Name=2; (Potential).				digestion|excretion	integral to plasma membrane	secretin receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3					Secretin(DB00021)	CGGCGTCCTTGATGAAGTTGG	0.572													20	68					0	0	0.043863	0	0
FAM123C	205147	broad.mit.edu	37	2	131521822	131521822	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:131521822C>T	uc002trw.2	+	2	2367	c.2177C>T	c.(2176-2178)CCC>CTC	p.P726L	FAM123C_uc010fmv.2_Missense_Mutation_p.P726L|FAM123C_uc010fms.1_Missense_Mutation_p.P726L|FAM123C_uc010fmt.1_Missense_Mutation_p.P726L|FAM123C_uc010fmu.1_Missense_Mutation_p.P726L	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	726										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		AGCAGCTCCCCCAGCATGACC	0.642													17	20					0	0	0.049695	0	0
NCKAP5	344148	broad.mit.edu	37	2	133539545	133539545	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:133539545C>T	uc002ttp.2	-	14	5213	c.4839G>A	c.(4837-4839)ACG>ACA	p.T1613T	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1613							protein binding				0						AGGTGTCTTTCGTTGAACATG	0.438													48	56					0	0	0.048971	0	0
NCKAP5	344148	broad.mit.edu	37	2	133543248	133543248	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:133543248G>A	uc002ttp.2	-	14	1510	c.1136C>T	c.(1135-1137)TCG>TTG	p.S379L	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	379	Ser-rich.						protein binding				0						ACTTGGGAGCGAAGAATCAAT	0.388													17	15					0	0	0.028581	0	0
CCNT2	905	broad.mit.edu	37	2	135711716	135711716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:135711716C>T	uc002tuc.1	+	9	1723	c.1691C>T	c.(1690-1692)CCT>CTT	p.P564L	CCNT2_uc002tub.1_Missense_Mutation_p.P564L|CCNT2_uc010zbf.1_Missense_Mutation_p.P389L|CCNT2_uc002tud.1_Missense_Mutation_p.P227L	NM_058241	NP_490595	O60583	CCNT2_HUMAN	cyclin T2 isoform b	564					cell cycle|cell division|interspecies interaction between organisms|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	protein kinase binding			ovary(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.107)		AAGGAGCATCCTTCAAGCCGC	0.527													33	40					0	0	0.059317	0	0
THSD7B	80731	broad.mit.edu	37	2	138000074	138000074	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:138000074C>T	uc002tva.1	+	9	2105	c.2105C>T	c.(2104-2106)CCA>CTA	p.P702L	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.P592L	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TGTTTTCTCCCATGCAAAAAA	0.468													28	32					0	0	0.041601	0	0
THSD7B	80731	broad.mit.edu	37	2	138400173	138400174	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:138400173_138400174CC>TT	uc002tva.1	+	20	3828_3829	c.3828_3829CC>TT	c.(3826-3831)GTCCTT>GTTTTT	p.L1277F	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		ACAGCTGGGTCCTTGGCAACTG	0.48													21	89					0	0	0.004672	0	0
LRP1B	53353	broad.mit.edu	37	2	141294269	141294269	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:141294269G>A	uc002tvj.1	-	46	8495	c.7523C>T	c.(7522-7524)TCC>TTC	p.S2508F		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2508	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GTTGCAGGAGGAATTTTTAGC	0.323										TSP Lung(27;0.18)			5	24					0	0	0.014758	0	0
NEB	4703	broad.mit.edu	37	2	152520314	152520314	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:152520314C>T	uc010fnx.2	-	45	5702	c.5511G>A	c.(5509-5511)CTG>CTA	p.L1837L		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1837	Nebulin 48.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GGTCATCTTCCAGGCTCCGGA	0.453													11	76					0	0	0.105934	0	0
FMNL2	114793	broad.mit.edu	37	2	153405583	153405583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:153405583G>A	uc002tye.2	+	4	698	c.331G>A	c.(331-333)GAA>AAA	p.E111K		NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	111	GBD/FH3.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						AAGAGAACTGGAAATTTCTTT	0.343													8	15					0	0	0.047766	0	0
IFIH1	64135	broad.mit.edu	37	2	163133297	163133297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:163133297G>A	uc002uce.2	-	11	2426	c.2204C>T	c.(2203-2205)TCC>TTC	p.S735F		NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	735	Helicase C-terminal.				detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						AATCCACTGGGAAAGCGCATA	0.413													43	115					0	0	0.104719	0	0
KCNH7	90134	broad.mit.edu	37	2	163374667	163374667	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:163374667C>T	uc002uch.1	-	4	677	c.465G>A	c.(463-465)CGG>CGA	p.R155R	KCNH7_uc002uci.2_Silent_p.R155R	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	155	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CAAAAAATTTCCCTATAAATG	0.368													32	31					0	0	0.054565	0	0
GRB14	2888	broad.mit.edu	37	2	165476206	165476206	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:165476206C>T	uc002ucl.2	-	2	856	c.315G>A	c.(313-315)AGG>AGA	p.R105R	GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	105					blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						CCTGTTTTTTCCTTGAATTTG	0.343													38	29					0	0	0.104719	0	0
ABCB11	8647	broad.mit.edu	37	2	169781241	169781241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:169781241G>A	uc002ueo.1	-	27	3817	c.3691C>T	c.(3691-3693)CGG>TGG	p.R1231W	ABCB11_uc010zda.1_Missense_Mutation_p.R649W|ABCB11_uc010zdb.1_Missense_Mutation_p.R707W	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1231	Cytoplasmic (Potential).|ABC transporter 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	ACAATGGCCCGAGCAATAGCA	0.398													25	59					0	0	0.083992	0	0
ABCB11	8647	broad.mit.edu	37	2	169781287	169781287	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:169781287C>T	uc002ueo.1	-	27	3771	c.3645G>A	c.(3643-3645)CAG>CAA	p.Q1215Q	ABCB11_uc010zda.1_Silent_p.Q633Q|ABCB11_uc010zdb.1_Silent_p.Q691Q	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1215	Cytoplasmic (Potential).|ABC transporter 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	GTTGAGACCCCTGGGACCCAA	0.423													28	44					0	0	0.034045	0	0
MYO3B	140469	broad.mit.edu	37	2	171256824	171256824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:171256824G>A	uc002ufy.2	+	17	2061	c.1918G>A	c.(1918-1920)GCT>ACT	p.A640T	MYO3B_uc002ufv.2_Missense_Mutation_p.A627T|MYO3B_uc010fqb.1_Missense_Mutation_p.A627T|MYO3B_uc002ufz.2_Missense_Mutation_p.A640T|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	640	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						TTTGCAAAATGGTAATTATTT	0.388													22	64					0	0	0.076483	0	0
RAPGEF4	11069	broad.mit.edu	37	2	173882199	173882199	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:173882199C>T	uc002uhv.3	+	21	2162	c.1975C>T	c.(1975-1977)CAG>TAG	p.Q659*	RAPGEF4_uc002uhw.3_Nonsense_Mutation_p.Q515*	NM_007023	NP_008954	Q8WZA2	RPGF4_HUMAN	Rap guanine nucleotide exchange factor (GEF) 4	659					blood coagulation|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of insulin secretion|regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex|membrane fraction|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity|Ras GTPase binding|Ras guanyl-nucleotide exchange factor activity			large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.194)			TGAGAGAGCCCAGAAGCGCCA	0.468													8	48					0	0	0.058154	0	0
OSBPL6	114880	broad.mit.edu	37	2	179238671	179238671	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:179238671A>G	uc002ulx.2	+	15	1828	c.1450A>G	c.(1450-1452)AGC>GGC	p.S484G	OSBPL6_uc002ulw.2_Missense_Mutation_p.S417G|OSBPL6_uc002uly.2_Missense_Mutation_p.S509G|OSBPL6_uc010zfe.1_Missense_Mutation_p.S453G|OSBPL6_uc002ulz.2_Missense_Mutation_p.S448G|OSBPL6_uc002uma.2_Missense_Mutation_p.S488G	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	484					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			AGCCAATGAGAGCCGCCTCTC	0.483													4	67					0	0	0.009096	0	0
TTN	7273	broad.mit.edu	37	2	179395655	179395655	+	Silent	SNP	T	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:179395655T>G	uc010zfg.1	-	307	98207	c.97983A>C	c.(97981-97983)ACA>ACC	p.T32661T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.T26356T|TTN_uc010zfi.1_Silent_p.T26289T|TTN_uc010zfj.1_Silent_p.T26164T|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33588							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGGTGGTGATGTCACAGCCT	0.478													42	139					0	0	0.092188	0	0
TTN	7273	broad.mit.edu	37	2	179458328	179458328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:179458328C>T	uc010zfg.1	-	247	51219	c.50995G>A	c.(50995-50997)GTG>ATG	p.V16999M	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.V10694M|TTN_uc010zfi.1_Missense_Mutation_p.V10627M|TTN_uc010zfj.1_Missense_Mutation_p.V10502M	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17926							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAATCAGACACCAGAGGATCA	0.299													14	24					0	0	0.024245	0	0
TTN	7273	broad.mit.edu	37	2	179498736	179498736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:179498736C>T	uc010zfg.1	-	180	35010	c.34786G>A	c.(34786-34788)GAA>AAA	p.E11596K	TTN_uc010zfh.1_Missense_Mutation_p.E5291K|TTN_uc010zfi.1_Missense_Mutation_p.E5224K|TTN_uc010zfj.1_Missense_Mutation_p.E5099K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12523							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAGAAAGTTCACAAACAAAA	0.373													78	81					0	0	0.048971	0	0
TTN	7273	broad.mit.edu	37	2	179554063	179554063	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:179554063C>T	uc010zfg.1	-	121	28457	c.28233G>A	c.(28231-28233)AGG>AGA	p.R9411R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.R6072R|TTN_uc010fre.1_Silent_p.R522R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10338							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAACAGGTTTCCTTTCTTCAG	0.363													9	44					0	0	0.047766	0	0
TTN	7273	broad.mit.edu	37	2	179582272	179582272	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:179582272G>A	uc010zfg.1	-	84	21821	c.21597C>T	c.(21595-21597)TCC>TCT	p.S7199S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.S3860S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8126							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTTGGCACTGGATGAAGCAG	0.453													12	12					0	0	0.020292	0	0
TTN	7273	broad.mit.edu	37	2	179583624	179583624	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:179583624G>A	uc010zfg.1	-	81	20795	c.20571C>T	c.(20569-20571)ATC>ATT	p.I6857I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.I3518I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7784							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGGTGCCTCTGATGACACTGG	0.493													16	18					0	0	0.024245	0	0
TTN	7273	broad.mit.edu	37	2	179612194	179612194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:179612194C>T	uc002unb.2	-	46	15157	c.14933G>A	c.(14932-14934)AGT>AAT	p.S4978N	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATTTCTTCACTGGTTGTACT	0.383													17	53					0	0	0.028581	0	0
TTN	7273	broad.mit.edu	37	2	179615636	179615636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:179615636C>T	uc002unb.2	-	46	11715	c.11491G>A	c.(11491-11493)GAA>AAA	p.E3831K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGGTATTTTCATTTACTAGA	0.363													25	119					0	0	0.091800	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187693133	187693133	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:187693133G>A	uc002upu.1	-	9	1520	c.1480C>T	c.(1480-1482)CCC>TCC	p.P494S		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	494					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			AGATACCTGGGAAAATGTTGG	0.318													21	31					0	0	0.055883	0	0
CALCRL	10203	broad.mit.edu	37	2	188225374	188225374	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:188225374G>A	uc002upv.3	-	10	1280	c.732C>T	c.(730-732)GCC>GCT	p.A244A	CALCRL_uc010frt.2_Silent_p.A244A	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	244	Cytoplasmic (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			CTGCAAACACGGCCACCACAA	0.398													10	38					0	0	0.080935	0	0
COL3A1	1281	broad.mit.edu	37	2	189868847	189868847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:189868847C>T	uc002uqj.1	+	39	2918	c.2801C>T	c.(2800-2802)TCG>TTG	p.S934L		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	934	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding	p.S934S(1)		central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GAGAAGGGATCGCCTGGTGCC	0.488													13	39					0	0	0.043863	0	0
COL3A1	1281	broad.mit.edu	37	2	189870113	189870113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:189870113G>A	uc002uqj.1	+	41	3086	c.2969G>A	c.(2968-2970)GGA>GAA	p.G990E		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	990	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GGTCTCAGTGGAGAACGTGGT	0.453													30	91					0	0	0.069456	0	0
MYO1B	4430	broad.mit.edu	37	2	192194745	192194745	+	Silent	SNP	A	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:192194745A>C	uc010fsg.2	+	4	591	c.336A>C	c.(334-336)GCA>GCC	p.A112A	MYO1B_uc002usq.2_Silent_p.A112A|MYO1B_uc002usr.2_Silent_p.A112A|MYO1B_uc002uss.1_Silent_p.A112A	NM_001130158	NP_001123630	O43795	MYO1B_HUMAN	myosin IB isoform 1	112	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(5)|large_intestine(2)|ovary(1)	8			OV - Ovarian serous cystadenocarcinoma(117;0.0112)|Epithelial(96;0.104)|all cancers(119;0.236)			AAAGTGGAGCAGGAAAAACAG	0.473													40	135					0	0	0.086207	0	0
DNAH7	56171	broad.mit.edu	37	2	196722390	196722390	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:196722390C>A	uc002utj.3	-	44	8226	c.8125G>T	c.(8125-8127)GAA>TAA	p.E2709*		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2709	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CATATAGCTTCCATAACAAGC	0.383													19	17					1.96292e-10	2.01721e-10	0.055883	1	0
DNAH7	56171	broad.mit.edu	37	2	196729521	196729521	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:196729521G>A	uc002utj.3	-	41	6959	c.6858C>T	c.(6856-6858)ATC>ATT	p.I2286I		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2286					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CCACATCTGCGATTTCTCTGT	0.378													70	79					0	0	0.048971	0	0
PLCL1	5334	broad.mit.edu	37	2	198949006	198949006	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:198949006G>A	uc010fsp.2	+	2	1056	c.765G>A	c.(763-765)GGG>GGA	p.G255G	PLCL1_uc002uuv.3_Silent_p.G176G	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	255					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	ATGTTGATGGGAATGGGATTA	0.413													19	71					0	0	0.049695	0	0
SATB2	23314	broad.mit.edu	37	2	200137332	200137332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:200137332G>A	uc002uuy.1	-	11	2621	c.1804C>T	c.(1804-1806)CCC>TCC	p.P602S	SATB2_uc010fsq.1_Missense_Mutation_p.P484S|SATB2_uc002uuz.1_Missense_Mutation_p.P602S|SATB2_uc002uva.1_Missense_Mutation_p.P602S	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	602						cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGAGGTGGGGGAGGCGCTTCT	0.502													41	128					0	0	0.048971	0	0
SATB2	23314	broad.mit.edu	37	2	200213619	200213619	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:200213619G>A	uc002uuy.1	-	7	1795	c.978C>T	c.(976-978)CTC>CTT	p.L326L	SATB2_uc010fsq.1_Silent_p.L208L|SATB2_uc002uuz.1_Silent_p.L326L|SATB2_uc002uva.1_Silent_p.L326L|SATB2_uc002uvb.1_Silent_p.L69L	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	326						cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGTGAGCCAGGAGCCGGCTAA	0.532													47	61					0	0	0.048971	0	0
ABCA12	26154	broad.mit.edu	37	2	215843674	215843674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:215843674C>T	uc002vew.2	-	32	5051	c.4831G>A	c.(4831-4833)GAT>AAT	p.D1611N	ABCA12_uc002vev.2_Missense_Mutation_p.D1293N|ABCA12_uc010zjn.1_Missense_Mutation_p.D538N	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1611					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CCCCCAATATCCTCCTTGAGG	0.493													13	50					0	0	0.093190	0	0
CCDC108	255101	broad.mit.edu	37	2	219870876	219870876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:219870876C>T	uc002vjl.1	-	31	4873	c.4789G>A	c.(4789-4791)GAG>AAG	p.E1597K		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1597						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GACACCTCCTCCTTTGGGGTC	0.617													25	74					0	0	0.099896	0	0
TUBA4A	7277	broad.mit.edu	37	2	220115133	220115133	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:220115133T>A	uc002vkt.1	-	4	1346	c.1288A>T	c.(1288-1290)AAG>TAG	p.K430*	TUBA4A_uc010zkz.1_Nonsense_Mutation_p.K415*|TUBA4B_uc002vku.2_5'Flank|TUBA4B_uc002vkv.1_5'Flank	NM_006000	NP_005991	P68366	TBA4A_HUMAN	tubulin, alpha 4a	430					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|platelet activation|platelet degranulation|protein polymerization	cytosol|extracellular region|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)	3		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000191)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TCATAATCCTTCTCCAGGGCA	0.527													33	102					0	0	0.041601	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882345	228882345	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:228882345C>T	uc002vpq.2	-	7	3272	c.3225G>A	c.(3223-3225)TGG>TGA	p.W1075*	SPHKAP_uc002vpp.2_Nonsense_Mutation_p.W1075*|SPHKAP_uc010zlx.1_Nonsense_Mutation_p.W1075*	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1075						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TCAGCCGGCTCCACCTGTCGC	0.597													42	38					0	0	0.045515	0	0
PSMD1	5707	broad.mit.edu	37	2	231948295	231948295	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:231948295C>T	uc002vrn.1	+	14	1671	c.1540C>T	c.(1540-1542)CTG>TTG	p.L514L	PSMD1_uc002vrm.1_Silent_p.L514L|PSMD1_uc010fxu.1_Silent_p.L378L	NM_002807	NP_002798	Q99460	PSMD1_HUMAN	proteasome 26S non-ATPase subunit 1	514	PC 4.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding			ovary(1)|skin(1)	2		Ovarian(221;0.000626)|Medulloblastoma(418;0.0109)|Renal(207;0.0112)|Lung NSC(271;0.0538)|all_lung(227;0.0713)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;4e-26)|LUSC - Lung squamous cell carcinoma(224;0.0138)|Lung(119;0.0168)	Bortezomib(DB00188)	AGCAGCTGGCCTGGCCCTAGG	0.423													58	70					0	0	0.048971	0	0
ARMC9	80210	broad.mit.edu	37	2	232160934	232160934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:232160934G>A	uc002vrq.3	+	19	1853	c.1741G>A	c.(1741-1743)GAA>AAA	p.E581K	ARMC9_uc002vrp.3_Missense_Mutation_p.E581K|ARMC9_uc002vrr.1_RNA	NM_025139	NP_079415	Q7Z3E5	ARMC9_HUMAN	armadillo repeat containing 9	581							binding			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0744)|all_hematologic(139;0.0749)|Acute lymphoblastic leukemia(138;0.167)|Medulloblastoma(418;0.184)|Lung NSC(271;0.205)		Epithelial(121;1.43e-10)|LUSC - Lung squamous cell carcinoma(224;0.017)|Lung(119;0.0189)		TGGTGTTCTTGAATCTGATGA	0.398													10	33					0	0	0.020292	0	0
ECEL1	9427	broad.mit.edu	37	2	233350790	233350790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:233350790C>T	uc002vsv.2	-	2	779	c.574G>A	c.(574-576)GAG>AAG	p.E192K	ECEL1_uc010fya.1_Missense_Mutation_p.E192K|ECEL1_uc010fyb.1_5'UTR	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	192	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		CGCTCGATCTCGCGCATGTCG	0.607													11	8					0	0	0.105934	0	0
TRPM8	79054	broad.mit.edu	37	2	234854559	234854559	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:234854559G>A	uc002vvh.2	+	7	799	c.759G>A	c.(757-759)CTG>CTA	p.L253L	TRPM8_uc010fyj.2_5'UTR	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	253	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	TGTATATCCTGGACAACAACC	0.438													36	53					0	0	0.080422	0	0
MLPH	79083	broad.mit.edu	37	2	238419296	238419296	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:238419296T>C	uc002vwt.2	+	3	417	c.190T>C	c.(190-192)TGC>CGC	p.C64R	MLPH_uc002vws.2_Missense_Mutation_p.C64R|MLPH_uc010fyt.1_Missense_Mutation_p.C64R|MLPH_uc002vwu.2_Missense_Mutation_p.C64R|MLPH_uc002vwv.2_Missense_Mutation_p.C64R|MLPH_uc002vww.2_Missense_Mutation_p.C40R	NM_024101	NP_077006	Q9BV36	MELPH_HUMAN	melanophilin isoform 1	64	FYVE-type.|RabBD.						metal ion binding			ovary(1)	1		Breast(86;0.000381)|Renal(207;0.000966)|Ovarian(221;0.0695)|all_hematologic(139;0.095)|all_lung(227;0.17)|Melanoma(123;0.203)		Epithelial(121;1.17e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.02e-10)|Kidney(56;4.23e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.15e-07)|BRCA - Breast invasive adenocarcinoma(100;0.000439)|Lung(119;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0316)		CGAGACCCACTGCGCCCGCTG	0.557													26	27					0	0	0.030593	0	0
KIF1A	547	broad.mit.edu	37	2	241713623	241713623	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:241713623G>A	uc002vzy.2	-	12	1160	c.1014C>T	c.(1012-1014)TAC>TAT	p.Y338Y	KIF1A_uc010fzk.2_Silent_p.Y338Y|KIF1A_uc002vzz.1_Silent_p.Y338Y	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	338	Kinesin-motor.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		GGGTCTCATCGTAGTTGATGT	0.572													12	30					0	0	0.020292	0	0
HDLBP	3069	broad.mit.edu	37	2	242189355	242189355	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:242189355G>A	uc002waz.2	-	12	1641	c.1413C>T	c.(1411-1413)ATC>ATT	p.I471I	HDLBP_uc002wba.2_Silent_p.I471I|HDLBP_uc002wbb.2_Silent_p.I423I	NM_203346	NP_976221	Q00341	VIGLN_HUMAN	high density lipoprotein binding protein	471	KH 5.				cholesterol metabolic process|lipid transport	cytoplasm|high-density lipoprotein particle|nucleus|plasma membrane	lipid binding|protein binding|RNA binding			breast(3)|skin(1)	4		all_cancers(19;7.77e-41)|all_epithelial(40;1.74e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.0121)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;8.13e-34)|all cancers(36;4.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;2.34e-15)|Kidney(56;3.72e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.76e-08)|BRCA - Breast invasive adenocarcinoma(100;3.38e-06)|Lung(119;0.000109)|LUSC - Lung squamous cell carcinoma(224;0.000964)|Colorectal(34;0.0132)|COAD - Colon adenocarcinoma(134;0.0928)		TGTCAGGAGGGATGCGCACGG	0.517													35	54					0	0	0.092188	0	0
NEU4	129807	broad.mit.edu	37	2	242758340	242758341	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr2:242758340_242758341GG>AA	uc010fzr.2	+	4	1507_1508	c.1421_1422GG>AA	c.(1420-1422)GGG>GAA	p.G474E	NEU4_uc002wcl.2_RNA|NEU4_uc002wcm.2_Missense_Mutation_p.G474E|NEU4_uc002wcn.1_Missense_Mutation_p.G486E|NEU4_uc002wco.1_Missense_Mutation_p.G474E|NEU4_uc002wcp.1_Missense_Mutation_p.G486E	NM_080741	NP_542779	Q8WWR8	NEUR4_HUMAN	sialidase 4	474						lysosomal lumen|organelle inner membrane	exo-alpha-sialidase activity|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;3.84e-33)|all cancers(36;8.08e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.41e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0825)		CCCAACCTTGGGGACAAGCCTC	0.649													12	13					0	0	0.004672	0	0
STK35	140901	broad.mit.edu	37	20	2083990	2083990	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:2083990C>T	uc010gak.2	+	2	871	c.871C>T	c.(871-873)CTG>TTG	p.L291L	STK35_uc010zpu.1_Silent_p.L158L|STK35_uc002wfw.3_Silent_p.L158L	NM_080836	NP_543026	Q8TDR2	STK35_HUMAN	serine/threonine kinase 35	291	Protein kinase.			YLRLVETSLKGERILGYAEE -> GNGEGRRPQRYTKPGAE KAK (in Ref. 4; AAI11574).		cytoplasm|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						TTACCTGCGCCTGGTGGAGAC	0.637													7	47					0	0	0.058154	0	0
TMC2	117532	broad.mit.edu	37	20	2591212	2591212	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:2591212C>T	uc002wgf.1	+	12	1576	c.1561C>T	c.(1561-1563)CTC>TTC	p.L521F	TMC2_uc002wgg.1_Missense_Mutation_p.L505F|TMC2_uc010zpw.1_Missense_Mutation_p.L353F|TMC2_uc010zpx.1_Missense_Mutation_p.L352F	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	521	Helical; (Potential).					integral to membrane				ovary(3)	3						CTACACATTTCTCTTGGCCCT	0.502													15	59					0	0	0.020292	0	0
VPS16	64601	broad.mit.edu	37	20	2846928	2846928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:2846928C>T	uc002whe.2	+	23	2390	c.2342C>T	c.(2341-2343)CCC>CTC	p.P781L	VPS16_uc002whh.2_Intron|PTPRA_uc002whj.2_Intron|VPS16_uc002whf.2_Missense_Mutation_p.P637L|VPS16_uc002whd.2_RNA|VPS16_uc002whg.2_Missense_Mutation_p.P467L|VPS16_uc002whi.2_Missense_Mutation_p.P265L	NM_022575	NP_072097	Q9H269	VPS16_HUMAN	vacuolar protein sorting 16 isoform 1	781					intracellular protein transport	early endosome|HOPS complex|late endosome membrane|lysosomal membrane|recycling endosome				ovary(2)|pancreas(1)|skin(1)	4						CGCGTGGGTCCCGAGCAGAAG	0.557													27	72					0	0	0.037714	0	0
PTPRA	5786	broad.mit.edu	37	20	3002778	3002778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:3002778C>T	uc010zqd.1	+	14	1590	c.1273C>T	c.(1273-1275)CCT>TCT	p.P425S	PTPRA_uc002whj.2_Missense_Mutation_p.P414S|PTPRA_uc002whk.2_Missense_Mutation_p.P405S|PTPRA_uc002whl.2_Missense_Mutation_p.P405S|PTPRA_uc002whm.2_Missense_Mutation_p.P181S|PTPRA_uc002whn.2_Missense_Mutation_p.P405S|PTPRA_uc002who.2_Missense_Mutation_p.P77S	NM_002836	NP_002827	P18433	PTPRA_HUMAN	protein tyrosine phosphatase, receptor type, A	414	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						CTTTGGGGTGCCTTTTACCCC	0.562													21	132					0	0	0.055883	0	0
ADAM33	80332	broad.mit.edu	37	20	3652925	3652925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:3652925G>A	uc002wit.2	-	14	1540	c.1453C>T	c.(1453-1455)CCT>TCT	p.P485S	ADAM33_uc002wiq.1_5'Flank|ADAM33_uc002wir.1_Missense_Mutation_p.P485S|ADAM33_uc002wis.2_Missense_Mutation_p.P7S|ADAM33_uc002wiu.2_Missense_Mutation_p.P485S|uc002wiv.1_5'Flank|ADAM33_uc002wiw.1_Intron|ADAM33_uc010gba.1_Intron|ADAM33_uc010gbb.1_Intron	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	485	Extracellular (Potential).|Disintegrin.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						CAAAACTCAGGGAGGTCACAG	0.662													50	133					0	0	0.048971	0	0
PLCB4	5332	broad.mit.edu	37	20	9438076	9438076	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:9438076C>T	uc002wnf.2	+	32	3112	c.2976C>T	c.(2974-2976)CTC>CTT	p.L992L	PLCB4_uc010gbw.1_Silent_p.L992L|PLCB4_uc010gbx.2_Silent_p.L1004L|PLCB4_uc002wne.2_Silent_p.L992L|PLCB4_uc002wnh.2_Silent_p.L839L	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	992					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						GTAATTGTCTCGAAATGAAAA	0.368													7	70					0	0	0.038147	0	0
BANF2	140836	broad.mit.edu	37	20	17705686	17705686	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:17705686C>T	uc002wpz.2	+	3	290	c.16C>T	c.(16-18)CCC>TCC	p.P6S	BANF2_uc010zrs.1_Missense_Mutation_p.P13S|BANF2_uc002wqa.2_Missense_Mutation_p.P6S	NM_178477	NP_848572	Q9H503	BAFL_HUMAN	barrier to autointegration factor 2 isoform 1	6						cytoplasm|nucleus	DNA binding			skin(1)	1						CAACATGTCTCCCAGGCTGAG	0.552													16	112					0	0	0.038395	0	0
GGTLC1	92086	broad.mit.edu	37	20	23966394	23966394	+	Silent	SNP	G	A	A	rs148590178		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:23966394G>A	uc002wts.2	-	5	574	c.441C>T	c.(439-441)TTC>TTT	p.F147F	GGTLC1_uc002wtu.2_Silent_p.F147F	NM_178312	NP_842564	Q9BX51	GGTL1_HUMAN	gamma-glutamyltransferase light chain 1	147							gamma-glutamyltransferase activity			ovary(1)	1						CGTCATAGCCGAACCAGAGGT	0.612													38	179					0	0	0.074837	0	0
TMEM90B	79953	broad.mit.edu	37	20	24523803	24523803	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:24523803G>A	uc002wtw.1	+	2	703	c.70G>A	c.(70-72)GGT>AGT	p.G24S		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	24	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						CAAGAGGAATGGTTTAATTAA	0.547													18	130					0	0	0.033300	0	0
PHF20	51230	broad.mit.edu	37	20	34519238	34519238	+	Silent	SNP	G	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:34519238G>T	uc002xek.1	+	15	2283	c.2172G>T	c.(2170-2172)CTG>CTT	p.L724L		NM_016436	NP_057520	Q9BVI0	PHF20_HUMAN	PHD finger protein 20	724					regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex	DNA binding|zinc ion binding			ovary(1)	1	Breast(12;0.00631)|all_lung(11;0.0145)					TGCATGGCCTGGCATTTCTAG	0.502													31	103					7.26314e-15	7.48886e-15	0.034045	1	0
TOX2	84969	broad.mit.edu	37	20	42680182	42680182	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:42680182C>T	uc002xlf.3	+	4	692	c.675C>T	c.(673-675)TTC>TTT	p.F225F	TOX2_uc010ggo.2_Silent_p.F216F|TOX2_uc002xle.3_Silent_p.F174F|TOX2_uc010ggp.2_Silent_p.F174F|TOX2_uc002xlg.2_Silent_p.F174F|TOX2_uc010zwk.1_Silent_p.F94F	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	225	Nuclear localization signal (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			AAGTGCATTTCAAGGTATGTG	0.612													12	56					0	0	0.080935	0	0
B4GALT5	9334	broad.mit.edu	37	20	48273211	48273211	+	Silent	SNP	G	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:48273211G>T	uc002xuu.3	-	2	338	c.144C>A	c.(142-144)GCC>GCA	p.A48A		NM_004776	NP_004767	O43286	B4GT5_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	48	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	galactosyltransferase activity|metal ion binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(9;2.51e-06)			GAATGCCTTGGGCTTGCATCA	0.448													117	64					2.91707e-64	3.03128e-64	0.048971	1	0
KCNG1	3755	broad.mit.edu	37	20	49626572	49626572	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:49626572G>A	uc002xwa.3	-	2	599	c.304C>T	c.(304-306)CTC>TTC	p.L102F	KCNG1_uc002xwb.2_Missense_Mutation_p.L102F	NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	102	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						CACACGTTGAGGATGTCGTCG	0.632													27	42					0	0	0.091800	0	0
MC3R	4159	broad.mit.edu	37	20	54824490	54824490	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:54824490C>T	uc002xxb.2	+	1	703	c.591C>T	c.(589-591)TTC>TTT	p.F197F		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	234	Helical; Name=5; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			CCATGTTCTTCGCCATGATGC	0.587													105	51					0	0	0.048971	0	0
OSBPL2	9885	broad.mit.edu	37	20	60856132	60856132	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:60856132C>T	uc002yck.1	+	8	895	c.693C>T	c.(691-693)ACC>ACT	p.T231T	OSBPL2_uc002ycl.1_Silent_p.T219T|OSBPL2_uc011aah.1_Silent_p.T139T|OSBPL2_uc002ycm.1_Silent_p.T43T	NM_144498	NP_653081	Q9H1P3	OSBL2_HUMAN	oxysterol-binding protein-like protein 2 isoform	231					lipid transport		lipid binding			ovary(1)|central_nervous_system(1)	2	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;1.33e-06)			AAGCCTACACCTGGACCAACC	0.532													36	113					0	0	0.111260	0	0
EEF1A2	1917	broad.mit.edu	37	20	62122033	62122033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:62122033C>T	uc002yfd.1	-	5	929	c.828G>A	c.(826-828)ATG>ATA	p.M276I	EEF1A2_uc002yfe.1_Missense_Mutation_p.M276I|EEF1A2_uc010gkg.1_Missense_Mutation_p.M276I	NM_001958	NP_001949	Q05639	EF1A2_HUMAN	eukaryotic translation elongation factor 1 alpha	276						nucleus	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0	all_cancers(38;9.45e-12)		BRCA - Breast invasive adenocarcinoma(10;1.22e-05)			AGGTCACCACCATGCCCGGCC	0.672													8	83					0	0	0.047766	0	0
PRIC285	85441	broad.mit.edu	37	20	62195584	62195584	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:62195584G>A	uc002yfm.2	-	9	5483	c.4591C>T	c.(4591-4593)CAG>TAG	p.Q1531*	PRIC285_uc002yfl.1_Nonsense_Mutation_p.Q962*	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	1531					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			CTATTAAACTGAATCATGTAC	0.652													5	37					0	0	0.029380	0	0
PRIC285	85441	broad.mit.edu	37	20	62196987	62196988	+	Missense_Mutation	DNP	GG	AA	AA	rs144293106		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:62196987_62196988GG>AA	uc002yfm.2	-	9	4079_4080	c.3187_3188CC>TT	c.(3187-3189)CCG>TTG	p.P1063L	PRIC285_uc002yfl.1_Missense_Mutation_p.P494L	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	1063					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			CCCGTCCCACGGCCAGAAGTCA	0.673													42	20					0	0	0.004672	0	0
TPTE	7179	broad.mit.edu	37	21	10916422	10916423	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr21:10916422_10916423GA>AT	uc002yip.1	-	20	1591_1592	c.1223_1224TC>AT	c.(1222-1224)CTC>CAT	p.L408H	TPTE_uc002yis.1_Intron|TPTE_uc002yiq.1_Missense_Mutation_p.L390H|TPTE_uc002yir.1_Missense_Mutation_p.L370H|TPTE_uc010gkv.1_Missense_Mutation_p.L270H	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	408					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GTCTTGGAGGGAGATTCCAGTT	0.361													17	113					0	0	0.004672	0	0
JAM2	58494	broad.mit.edu	37	21	27062217	27062217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr21:27062217C>T	uc002ylp.1	+	3	718	c.173C>T	c.(172-174)TCC>TTC	p.S58F	JAM2_uc011ace.1_Missense_Mutation_p.S58F|JAM2_uc002ylq.1_RNA|JAM2_uc011acf.1_Intron|JAM2_uc010glh.1_RNA|JAM2_uc002ylr.1_Missense_Mutation_p.S58F|JAM2_uc010gli.1_Missense_Mutation_p.S58F	NM_021219	NP_067042	P57087	JAM2_HUMAN	junctional adhesion molecule 2 precursor	58	Ig-like V-type.|Extracellular (Potential).				blood coagulation|cell-cell adhesion|leukocyte migration	integral to plasma membrane|tight junction					0						AAGACTGTTTCCTCCAGATTA	0.398													117	112					0	0	0.048971	0	0
KRTAP13-3	337960	broad.mit.edu	37	21	31797817	31797817	+	Silent	SNP	A	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr21:31797817A>C	uc002yob.1	-	1	414	c.414T>G	c.(412-414)CCT>CCG	p.P138P		NM_181622	NP_853653	Q3SY46	KR133_HUMAN	keratin associated protein 13-3	138						intermediate filament				ovary(1)|lung(1)	2						AACTCTGGGAAGGGGAGGTAT	0.463													9	29					0	0	0.069234	0	0
KCNJ6	3763	broad.mit.edu	37	21	38997535	38997535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr21:38997535C>T	uc011aej.1	-	4	1251	c.1198G>A	c.(1198-1200)GAA>AAA	p.E400K	KCNJ6_uc002ywo.2_Missense_Mutation_p.E400K	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	400	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	TTCTTTTCTTCCTCTTCAGTC	0.498													35	123					0	0	0.064281	0	0
MX2	4600	broad.mit.edu	37	21	42762624	42762624	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr21:42762624A>G	uc002yzf.1	+	6	969	c.865A>G	c.(865-867)ACC>GCC	p.T289A	MX2_uc011aer.1_Intron|MX2_uc002yzg.1_Missense_Mutation_p.T12A	NM_002463	NP_002454	P20592	MX2_HUMAN	myxovirus resistance protein 2	289					response to virus|type I interferon-mediated signaling pathway	cytoplasm|nucleus	GTP binding|GTPase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0222)				AGGGGACAGGACCATCGGTAA	0.368													20	48					0	0	0.043863	0	0
ITGB2	3689	broad.mit.edu	37	21	46309893	46309894	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr21:46309893_46309894CC>AT	uc002zgd.2	-	11	1700_1701	c.1656_1657GG>AT	c.(1654-1659)CCGGGG>CCATGG	p.G553W	ITGB2_uc002zge.2_Missense_Mutation_p.G553W|ITGB2_uc002zgf.3_Missense_Mutation_p.G553W|ITGB2_uc011afl.1_Missense_Mutation_p.G475W|ITGB2_uc010gpw.2_Missense_Mutation_p.G496W|ITGB2_uc002zgg.2_Missense_Mutation_p.G553W	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	553	Extracellular (Potential).|Cysteine-rich tandem repeats.|III.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	ACGGGCTCACCCGGGCCGCCGC	0.639													32	37					0	0	0.004672	0	0
SLC25A18	83733	broad.mit.edu	37	22	18069942	18069942	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr22:18069942C>T	uc002zmp.1	+	8	944	c.450C>T	c.(448-450)TCC>TCT	p.S150S	SLC25A18_uc010gqx.2_Silent_p.S150S|SLC25A18_uc002zmq.1_Silent_p.S150S	NM_031481	NP_113669	Q9H1K4	GHC2_HUMAN	solute carrier	150	Solcar 2.					integral to membrane|mitochondrial inner membrane	binding|symporter activity				0				Lung(27;0.124)	L-Glutamic Acid(DB00142)	CCTCCACCTCCAGGTCCTACA	0.617													58	130					0	0	0.048971	0	0
DGCR2	9993	broad.mit.edu	37	22	19055731	19055731	+	Silent	SNP	G	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr22:19055731G>C	uc002zoq.1	-	3	458	c.210C>G	c.(208-210)ACC>ACG	p.T70T	DGCR2_uc002zor.1_5'UTR|DGCR2_uc011agr.1_Silent_p.T29T	NM_005137	NP_005128	P98153	IDD_HUMAN	integral membrane protein DGCR2 precursor	70	Extracellular (Potential).				cell adhesion|organ morphogenesis	integral to membrane	receptor activity|sugar binding			large_intestine(1)	1	Colorectal(54;0.0993)					GCACCTCCCCGGTCACTTCTG	0.637													20	18					0	0	0.062417	0	0
C22orf29	79680	broad.mit.edu	37	22	19839544	19839544	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr22:19839544G>A	uc002zqg.2	-	2	840	c.241C>T	c.(241-243)CCC>TCC	p.P81S	GNB1L_uc002zqd.1_Intron|GNB1L_uc002zqe.1_Intron|GNB1L_uc002zqf.1_Intron|C22orf29_uc002zqh.2_Missense_Mutation_p.P81S|C22orf29_uc002zqi.2_Missense_Mutation_p.P81S|C22orf29_uc010grt.1_Intron	NM_024627	NP_078903	Q7L3V2	CV029_HUMAN	hypothetical protein LOC79680	81											0	Colorectal(54;0.0993)					CCAGCTAGGGGACCCCTTTCT	0.627													47	97					0	0	0.048971	0	0
PI4KA	5297	broad.mit.edu	37	22	21172816	21172816	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr22:21172816G>A	uc002zsz.3	-	7	868	c.637C>T	c.(637-639)CCC>TCC	p.P213S	PI4KA_uc010gsq.1_Missense_Mutation_p.P271S	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	213					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			CTGGGAGGGGGCATGCCGCGT	0.488													3	33					0	0	0.009096	0	0
SGSM1	129049	broad.mit.edu	37	22	25251579	25251579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr22:25251579G>A	uc003abg.2	+	8	890	c.733G>A	c.(733-735)GTG>ATG	p.V245M	SGSM1_uc003abh.2_Missense_Mutation_p.V245M|SGSM1_uc010guu.1_Missense_Mutation_p.V245M|SGSM1_uc003abj.2_Missense_Mutation_p.V245M|SGSM1_uc003abi.1_Missense_Mutation_p.V220M|SGSM1_uc003abf.2_Missense_Mutation_p.V245M	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	245						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						CCGCGACTACGTGGAGTCCCT	0.562													14	12					0	0	0.020292	0	0
MYO18B	84700	broad.mit.edu	37	22	26299753	26299753	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr22:26299753G>A	uc003abz.1	+	31	5353	c.5103G>A	c.(5101-5103)CAG>CAA	p.Q1701Q	MYO18B_uc003aca.1_Silent_p.Q1582Q|MYO18B_uc010guy.1_Silent_p.Q1583Q|MYO18B_uc010guz.1_Silent_p.Q1581Q|MYO18B_uc011aka.1_Silent_p.Q855Q|MYO18B_uc011akb.1_Silent_p.Q1214Q	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1701	Potential.|Tail.|Gln-rich.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TTGAGCAACAGAAAATCCAGA	0.552													6	1					0	0	0.038147	0	0
TFIP11	24144	broad.mit.edu	37	22	26906129	26906129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr22:26906129G>A	uc003acr.2	-	3	484	c.110C>T	c.(109-111)CCC>CTC	p.P37L	TFIP11_uc003acs.2_Missense_Mutation_p.P37L|TFIP11_uc003act.2_Missense_Mutation_p.P37L	NM_012143	NP_036275	Q9UBB9	TFP11_HUMAN	tuftelin interacting protein 11	37					biomineral tissue development	catalytic step 2 spliceosome|cytoplasm|nuclear speck	DNA binding|sequence-specific DNA binding transcription factor activity				0						CTGTCGGTTGGGGTTGAACTC	0.567													70	29					0	0	0.048971	0	0
TBC1D10A	83874	broad.mit.edu	37	22	30700559	30700559	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr22:30700559G>A	uc011akt.1	-	2	294	c.270C>T	c.(268-270)CTC>CTT	p.L90L	TBC1D10A_uc003ahj.3_Silent_p.L2L|TBC1D10A_uc010gvu.2_Silent_p.L97L|TBC1D10A_uc003ahk.3_Silent_p.L90L	NM_031937	NP_114143	Q9BXI6	TB10A_HUMAN	TBC1 domain family, member 10A	90						intracellular|microvillus	guanyl-nucleotide exchange factor activity|PDZ domain binding|Rab GTPase activator activity			ovary(1)	1						CCCAGTTGTTGAGCATGTCCA	0.602													20	9					0	0	0.055883	0	0
DEPDC5	9681	broad.mit.edu	37	22	32217491	32217491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr22:32217491C>T	uc003als.2	+	23	2016	c.1874C>T	c.(1873-1875)CCA>CTA	p.P625L	DEPDC5_uc011als.1_Intron|DEPDC5_uc011alu.1_Missense_Mutation_p.P625L|DEPDC5_uc011alv.1_Intron|DEPDC5_uc003alt.2_Missense_Mutation_p.P625L|DEPDC5_uc003alu.2_Missense_Mutation_p.P65L|DEPDC5_uc003alv.2_Intron|DEPDC5_uc011alw.1_5'Flank|DEPDC5_uc011alt.1_Intron	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	625					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						TGGGTAGGGCCATCCGGAGAA	0.537													64	47					0	0	0.048971	0	0
MICALL1	85377	broad.mit.edu	37	22	38313723	38313723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr22:38313723C>T	uc003aui.2	+	4	431	c.347C>T	c.(346-348)TCG>TTG	p.S116L		NM_033386	NP_203744	Q8N3F8	MILK1_HUMAN	molecule interacting with Rab13	116						cytoplasm|cytoskeleton	protein binding|zinc ion binding			breast(1)	1	Melanoma(58;0.045)					GCTGGTGTCTCGCCACCCAGA	0.587													26	25					0	0	0.034045	0	0
CBX7	23492	broad.mit.edu	37	22	39530535	39530535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr22:39530535G>A	uc003axb.2	-	5	558	c.469C>T	c.(469-471)CCG>TCG	p.P157S	CBX7_uc003axc.2_Intron	NM_175709	NP_783640	O95931	CBX7_HUMAN	chromobox homolog 7	157					chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear chromatin|PcG protein complex				ovary(1)	1	Melanoma(58;0.04)					CCGCGGGGCGGGAACTTCTTG	0.697													15	5					0	0	0.024245	0	0
PDGFB	5155	broad.mit.edu	37	22	39631876	39631877	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr22:39631876_39631877CC>TT	uc003axf.2	-	2	1055_1056	c.66_67GG>AA	c.(64-69)GGGGAC>GGAAAC	p.D23N	PDGFB_uc003axe.2_Missense_Mutation_p.D8N	NM_002608	NP_002599	P01127	PDGFB_HUMAN	platelet-derived growth factor beta isoform 1	23					activation of protein kinase B activity|cellular response to mycophenolic acid|embryonic placenta development|heart development|hemopoiesis|metanephric glomerular mesangial cell development|monocyte chemotaxis|negative regulation of phosphatidylinositol biosynthetic process|negative regulation of platelet activation|negative regulation of transcription, DNA-dependent|paracrine signaling|peptidyl-serine phosphorylation|peptidyl-tyrosine phosphorylation|platelet activation|platelet degranulation|positive regulation of blood vessel endothelial cell migration|positive regulation of calcium ion import|positive regulation of cell division|positive regulation of chemotaxis|positive regulation of cyclin-dependent protein kinase activity|positive regulation of DNA biosynthetic process|positive regulation of DNA replication|positive regulation of endothelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|positive regulation of glomerular filtration|positive regulation of glomerular mesangial cell proliferation|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein autophosphorylation|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription, DNA-dependent|reactive oxygen species metabolic process|transforming growth factor beta receptor signaling pathway	basolateral plasma membrane|cell surface|endoplasmic reticulum lumen|extracellular region|Golgi membrane|platelet alpha granule lumen	collagen binding|eukaryotic cell surface binding|growth factor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein heterodimerization activity|protein homodimerization activity|superoxide-generating NADPH oxidase activator activity		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(1)	373	Melanoma(58;0.04)				Becaplermin(DB00102)	GGAATGGGGTCCCCCTGCCGGG	0.594			T	COL1A1	DFSP								12	12					0	0	0.004672	0	0
PARVG	64098	broad.mit.edu	37	22	44579272	44579272	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr22:44579272G>A	uc011aqe.1	+	3	487	c.63G>A	c.(61-63)GAG>GAA	p.E21E	PARVG_uc010gzo.2_Silent_p.E88E|PARVG_uc010gzp.2_RNA|PARVG_uc003bep.2_Silent_p.E21E|PARVG_uc010gzq.1_RNA|PARVG_uc010gzr.1_RNA|PARVG_uc011aqf.1_Silent_p.E21E|PARVG_uc003beq.2_RNA|PARVG_uc003ber.2_RNA	NM_001137605	NP_001131077	Q9HBI0	PARVG_HUMAN	parvin, gamma	21					cell-matrix adhesion	cytoplasm|cytoskeleton|focal adhesion	actin binding				0		Ovarian(80;0.024)|all_neural(38;0.0299)				CCCCAGCGGAGGAGGAGCTCT	0.647													19	8					0	0	0.062417	0	0
TBC1D22A	25771	broad.mit.edu	37	22	47393560	47393560	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr22:47393560C>T	uc003bib.2	+	10	1291	c.1156C>T	c.(1156-1158)CAA>TAA	p.Q386*	TBC1D22A_uc010haf.2_Nonsense_Mutation_p.Q356*|TBC1D22A_uc003bic.2_Nonsense_Mutation_p.Q327*|TBC1D22A_uc003bie.2_Nonsense_Mutation_p.Q308*|TBC1D22A_uc003bid.2_RNA|TBC1D22A_uc010hag.2_RNA|TBC1D22A_uc003bif.2_Nonsense_Mutation_p.Q339*	NM_014346	NP_055161	Q8WUA7	TB22A_HUMAN	TBC1 domain family, member 22A	386	Rab-GAP TBC.					intracellular	protein homodimerization activity|Rab GTPase activator activity			ovary(1)	1		all_cancers(38;4.44e-05)|all_epithelial(38;0.000507)|Breast(42;0.0488)|all_lung(38;0.0682)|Ovarian(80;0.0731)|all_neural(38;0.0966)|Glioma(61;0.222)|Lung SC(80;0.236)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0347)|BRCA - Breast invasive adenocarcinoma(115;0.231)		ACCTGGGATTCAAATGAAAGT	0.458													40	21					0	0	0.048971	0	0
CPNE9	151835	broad.mit.edu	37	3	9759820	9759820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:9759820G>A	uc003bsd.2	+	15	1210	c.1039G>A	c.(1039-1041)GAT>AAT	p.D347N		NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	347	VWFA.									ovary(2)	2	Medulloblastoma(99;0.227)					CTATGACAGTGATAAGCTCTT	0.577													24	43					0	0	0.083992	0	0
SLC6A1	6529	broad.mit.edu	37	3	11064053	11064053	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:11064053G>A	uc010hdq.2	+	7	1024	c.613G>A	c.(613-615)GAT>AAT	p.D205N		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	205	Extracellular (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	GGACGGGCTGGATAAGCCAGG	0.582													10	18					0	0	0.105934	0	0
CAND2	23066	broad.mit.edu	37	3	12858878	12858878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:12858878C>T	uc003bxk.2	+	10	2496	c.2447C>T	c.(2446-2448)CCC>CTC	p.P816L	CAND2_uc003bxj.2_Missense_Mutation_p.P723L	NM_001162499	NP_001155971	O75155	CAND2_HUMAN	TBP-interacting protein isoform 1	816					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			skin(3)|pancreas(1)	4						GCTGCCTGTCCCCAAGAGGCG	0.647													40	79					0	0	0.104719	0	0
C3orf20	84077	broad.mit.edu	37	3	14724232	14724232	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:14724232C>T	uc003byy.2	+	3	416	c.12C>T	c.(10-12)ATC>ATT	p.I4I	C3orf20_uc003byz.2_Intron|C3orf20_uc003bza.2_Intron|C3orf20_uc003byx.1_Silent_p.I4I	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	4						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						TGAGTTACATCAAGAGTAACC	0.483													79	104					0	0	0.048971	0	0
KCNH8	131096	broad.mit.edu	37	3	19574921	19574921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:19574921G>A	uc003cbk.1	+	16	2849	c.2654G>A	c.(2653-2655)GGT>GAT	p.G885D	KCNH8_uc010hex.1_Missense_Mutation_p.G346D	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	885	Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						TCTCAGTTGGGTAAAGACATG	0.448													49	66					0	0	0.048971	0	0
KAT2B	8850	broad.mit.edu	37	3	20187898	20187898	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:20187898C>T	uc003cbq.2	+	14	2541	c.2095C>T	c.(2095-2097)CCT>TCT	p.P699S		NM_003884	NP_003875	Q92831	KAT2B_HUMAN	K(lysine) acetyltransferase 2B	699					cell cycle arrest|cellular response to insulin stimulus|chromatin remodeling|histone H3 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|negative regulation of cell proliferation|transcription initiation from RNA polymerase I promoter	Ada2/Gcn5/Ada3 transcription activator complex|chromatin remodeling complex|PCAF complex	cyclin-dependent protein kinase inhibitor activity|histone acetyltransferase activity|histone deacetylase binding|protein kinase binding|transcription coactivator activity|transcription factor binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TCGACAGATTCCTATAGAAAG	0.328													59	71					0	0	0.048971	0	0
ZNF385D	79750	broad.mit.edu	37	3	21706440	21706440	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:21706440G>C	uc003cce.2	-	2	511	c.103C>G	c.(103-105)CCA>GCA	p.P35A	ZNF385D_uc010hfb.1_Intron	NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	35						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						GGAAGAAATGGTTTAATATCC	0.517													23	36					0	0	0.062417	0	0
EOMES	8320	broad.mit.edu	37	3	27759018	27759018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:27759018G>A	uc003cdx.2	-	6	1604	c.1604C>T	c.(1603-1605)TCC>TTC	p.S535F	EOMES_uc003cdy.3_Missense_Mutation_p.S554F|EOMES_uc010hfn.2_3'UTR|EOMES_uc011axc.1_Missense_Mutation_p.S259F	NM_005442	NP_005433	O95936	EOMES_HUMAN	eomesodermin	535					CD8-positive, alpha-beta T cell differentiation involved in immune response|cell differentiation involved in embryonic placenta development|endoderm formation|mesoderm formation|mesodermal to mesenchymal transition involved in gastrulation|positive regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|breast(1)	4						AGATTCATAGGAACTGATGTC	0.527													65	111					0	0	0.048971	0	0
TMPPE	643853	broad.mit.edu	37	3	33134463	33134463	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:33134463G>T	uc003cfk.2	-	2	1416	c.1225C>A	c.(1225-1227)CCC>ACC	p.P409T	GLB1_uc003cfh.1_Intron|GLB1_uc003cfi.1_Intron|GLB1_uc003cfj.1_Intron|GLB1_uc011axk.1_Intron|TMPPE_uc011axl.1_Missense_Mutation_p.P272T	NM_001039770	NP_001034859	Q6ZT21	TMPPE_HUMAN	transmembrane protein with	409						integral to membrane	metal ion binding				0						GCAAAGAAGGGATTCAGGAGA	0.562													24	56					2.44723e-14	2.52049e-14	0.099896	1	0
DLEC1	9940	broad.mit.edu	37	3	38155851	38155851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:38155851G>A	uc003cho.1	+	26	3706	c.3685G>A	c.(3685-3687)GAA>AAA	p.E1229K	DLEC1_uc003chp.1_Missense_Mutation_p.E1229K|DLEC1_uc010hgv.1_Missense_Mutation_p.E1232K|DLEC1_uc003chr.1_Missense_Mutation_p.E300K|DLEC1_uc010hgx.1_RNA|DLEC1_uc003chs.1_5'Flank	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	1229					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		CCTGCTGCCGGAAGTCATCCC	0.617													21	46					0	0	0.055883	0	0
SCN5A	6331	broad.mit.edu	37	3	38629054	38629054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:38629054C>T	uc003cio.2	-	15	2467	c.2273G>A	c.(2272-2274)GGG>GAG	p.G758E	SCN5A_uc003cin.2_Missense_Mutation_p.G758E|SCN5A_uc003cil.3_Missense_Mutation_p.G758E|SCN5A_uc010hhi.2_Missense_Mutation_p.G758E|SCN5A_uc010hhk.2_Missense_Mutation_p.G758E|SCN5A_uc011ayr.1_Missense_Mutation_p.G758E|SCN5A_uc010hhj.1_Missense_Mutation_p.G369E	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	758	Helical; Name=S2 of repeat II; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TGTGAAAATCCCTGTGAAGAC	0.542													14	36					0	0	0.033300	0	0
SCN11A	11280	broad.mit.edu	37	3	38991749	38991749	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:38991749C>T	uc011ays.1	-	1	304	c.105G>A	c.(103-105)AAG>AAA	p.K35K		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	35					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TCTTTTTCTCCTTTTGGATGG	0.512													70	122					0	0	0.048971	0	0
ZNF167	55888	broad.mit.edu	37	3	44612349	44612349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:44612349G>A	uc010hin.2	+	6	2135	c.1747G>A	c.(1747-1749)GAA>AAA	p.E583K	ZNF167_uc003cni.2_Intron|ZNF167_uc010hio.2_Intron|ZNF167_uc003cnj.2_Missense_Mutation_p.E583K|ZNF167_uc003cnk.2_Intron	NM_018651	NP_061121	Q9P0L1	ZN167_HUMAN	zinc finger protein 167 isoform 1	583	C2H2-type 8.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(197;0.0486)|Kidney(197;0.0609)		CAAATGTAGTGAATGTGGGAA	0.428													26	68					0	0	0.041601	0	0
CDCP1	64866	broad.mit.edu	37	3	45127545	45127545	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:45127545T>C	uc003com.2	-	9	2231	c.2096A>G	c.(2095-2097)AAC>AGC	p.N699S		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	699	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		GGGGCCCTTGTTTGTCTTCTT	0.453													63	116					0	0	0.048971	0	0
XCR1	2829	broad.mit.edu	37	3	46062536	46062536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:46062536G>A	uc003cpe.2	-	3	1128	c.904C>T	c.(904-906)CTC>TTC	p.L302F	uc003cpd.1_5'Flank|XCR1_uc003cpf.2_Missense_Mutation_p.L302F	NM_005283	NP_005274	P46094	XCR1_HUMAN	XC chemokine receptor 1	302	Cytoplasmic (Potential).				chemotaxis|G-protein signaling, coupled to cyclic nucleotide second messenger|inflammatory response	integral to plasma membrane	chemokine receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		AACTGCCGGAGAACATGTTTC	0.617													7	15					0	0	0.038147	0	0
CCR2	729230	broad.mit.edu	37	3	46399710	46399710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:46399710G>A	uc003cpn.3	+	2	1177	c.692G>A	c.(691-693)CGG>CAG	p.R231Q	CCR2_uc003cpm.3_Missense_Mutation_p.R231Q	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	231	Cytoplasmic (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		ACCCTGCTTCGGTGTCGAAAC	0.453													136	282					0	0	0.048971	0	0
CAMP	820	broad.mit.edu	37	3	48266876	48266876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:48266876G>A	uc003csj.1	+	4	615	c.475G>A	c.(475-477)GAT>AAT	p.D159N		NM_004345	NP_004336	P49913	CAMP_HUMAN	cathelicidin antimicrobial peptide	159					killing by host of symbiont cells|negative regulation of growth of symbiont on or near host surface	extracellular region				upper_aerodigestive_tract(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000614)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		GAGAATCAAGGATTTTTTGCG	0.448													63	123					0	0	0.048971	0	0
UBA7	7318	broad.mit.edu	37	3	49850926	49850926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:49850926C>T	uc003cxr.2	-	2	382	c.211G>A	c.(211-213)GAC>AAC	p.D71N		NM_003335	NP_003326	P41226	UBA7_HUMAN	ubiquitin-like modifier activating enzyme 7	71	2 approximate repeats.|1-1.				ISG15-protein conjugation|negative regulation of type I interferon production	cytosol	ATP binding|ISG15 activating enzyme activity|ligase activity			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(193;3.58e-06)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		GCAGCCAGGTCGGACCAGCAG	0.657													46	102					0	0	0.048971	0	0
CAMKV	79012	broad.mit.edu	37	3	49898415	49898415	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:49898415G>A	uc003cxt.1	-	7	792	c.599C>T	c.(598-600)CCT>CTT	p.P200L	CAMKV_uc011bcy.1_Missense_Mutation_p.P125L|CAMKV_uc003cxv.1_Intron|CAMKV_uc003cxw.1_Missense_Mutation_p.P32L|CAMKV_uc003cxx.1_Missense_Mutation_p.P32L|CAMKV_uc003cxu.2_Missense_Mutation_p.P200L|CAMKV_uc011bcz.1_Missense_Mutation_p.P163L|CAMKV_uc011bda.1_Missense_Mutation_p.P157L|CAMKV_uc011bdb.1_RNA	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	200	Protein kinase.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		GCAGTCCACAGGGCGTCCATA	0.592													34	50					0	0	0.069456	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50404023	50404023	+	Missense_Mutation	SNP	C	T	T	rs140562117		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:50404023C>T	uc003daq.2	-	31	2682	c.2644G>A	c.(2644-2646)GAG>AAG	p.E882K	CACNA2D2_uc003dap.2_Missense_Mutation_p.E875K|CACNA2D2_uc003dao.2_5'Flank	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	882	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	TTGTTAACCTCGCAGTCCATC	0.582													23	35					0	0	0.108266	0	0
DOCK3	1795	broad.mit.edu	37	3	51352508	51352508	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:51352508C>T	uc011bds.1	+	32	3374	c.3351C>T	c.(3349-3351)ATC>ATT	p.I1117I		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1117						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TGATTCCCATCTTTCATGACA	0.463													25	52					0	0	0.091800	0	0
RAD54L2	23132	broad.mit.edu	37	3	51664882	51664882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:51664882C>T	uc011bdt.1	+	6	885	c.760C>T	c.(760-762)CAC>TAC	p.H254Y	RAD54L2_uc003dbh.2_5'UTR|RAD54L2_uc011bdu.1_5'UTR|RAD54L2_uc003dbj.2_5'UTR	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	254						nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		CAACCTAAACCACCCTCCAGA	0.507													43	64					0	0	0.048971	0	0
RRP9	9136	broad.mit.edu	37	3	51967584	51967584	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:51967584G>A	uc003dbw.1	-	15	1405	c.1366C>T	c.(1366-1368)CGG>TGG	p.R456W		NM_004704	NP_004695	O43818	U3IP2_HUMAN	RNA, U3 small nucleolar interacting protein 2	456	WD 7.				rRNA processing	nucleolus|small nuclear ribonucleoprotein complex|small nucleolar ribonucleoprotein complex	RNA binding			breast(2)|ovary(1)	3				BRCA - Breast invasive adenocarcinoma(193;8.04e-05)|Kidney(197;0.000553)|KIRC - Kidney renal clear cell carcinoma(197;0.000724)		ACAGAATTCCGAGCCTCTTTG	0.572													38	46					0	0	0.086207	0	0
DNAH1	25981	broad.mit.edu	37	3	52394357	52394357	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:52394357C>T	uc011bef.1	+	28	4863	c.4602C>T	c.(4600-4602)ATC>ATT	p.I1534I		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1534	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		ACCTGTATATCCGTGCTGTGA	0.552													19	47					0	0	0.055883	0	0
NISCH	11188	broad.mit.edu	37	3	52506374	52506374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:52506374C>T	uc011beg.1	+	7	701	c.629C>T	c.(628-630)CCG>CTG	p.P210L	NISCH_uc003ded.3_Missense_Mutation_p.P210L|NISCH_uc003dec.1_Missense_Mutation_p.P210L	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	210	Necessary for homooligomerization and targeting to endosomes.				apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		CAGCTCCTGCCGTTCGACCTA	0.527											OREG0015615	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	76					0	0	0.086207	0	0
NISCH	11188	broad.mit.edu	37	3	52523640	52523640	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:52523640C>T	uc011beg.1	+	18	3474	c.3402C>T	c.(3400-3402)GTC>GTT	p.V1134V	NISCH_uc003ded.3_Silent_p.V1134V|NISCH_uc003dee.3_Silent_p.V623V|NISCH_uc003deg.1_RNA|NISCH_uc003deh.3_5'Flank	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	1134					apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		TCCGGCACGTCGCCAGCCTGC	0.622													52	66					0	0	0.048971	0	0
NT5DC2	64943	broad.mit.edu	37	3	52562897	52562897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:52562897G>A	uc003deo.2	-	3	785	c.361C>T	c.(361-363)CTC>TTC	p.L121F	NT5DC2_uc003dem.2_5'Flank|NT5DC2_uc003den.2_Missense_Mutation_p.L158F|NT5DC2_uc010hmi.2_Intron|NT5DC2_uc010hmj.2_5'UTR	NM_022908	NP_075059	Q9H857	NT5D2_HUMAN	5'-nucleotidase domain containing 2 isoform 2	121							hydrolase activity|metal ion binding				0				BRCA - Breast invasive adenocarcinoma(193;1.7e-05)|Kidney(197;0.00177)|KIRC - Kidney renal clear cell carcinoma(197;0.002)|OV - Ovarian serous cystadenocarcinoma(275;0.0476)		TCATAGTGGAGGCCACGGATG	0.582													59	79					0	0	0.048971	0	0
ITIH4	3700	broad.mit.edu	37	3	52850926	52850926	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:52850926C>T	uc003dfz.2	-	21	2481	c.2445G>A	c.(2443-2445)AAG>AAA	p.K815K	ITIH4_uc011bel.1_Silent_p.K529K|ITIH4_uc003dfy.2_Silent_p.K610K|ITIH4_uc011bem.1_Silent_p.K820K|ITIH4_uc011ben.1_Silent_p.K785K	NM_002218	NP_002209	Q14624	ITIH4_HUMAN	inter-alpha (globulin) inhibitor H4	815					acute-phase response|hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		ATAGCGTCTCCTTCCACTTGT	0.582													94	171					0	0	0.048971	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54919339	54919339	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:54919339C>T	uc003dhf.2	+	22	1992	c.1944C>T	c.(1942-1944)TCC>TCT	p.S648S	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.S554S|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Silent_p.S382S|uc003dhk.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	648	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		CCGATGTGTCCTTGGCAGATG	0.483													27	66					0	0	0.041601	0	0
LOC285359	285359	broad.mit.edu	37	3	101431995	101431995	+	RNA	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:101431995C>T	uc003dvj.2	+	1		c.718C>T				NR_002941				Homo sapiens cDNA FLJ12205 fis, clone MAMMA1000931.												0						GTGTGGCACTCTGTCCTCATG	0.448													9	22					0	0	0.058154	0	0
FAM55C	91775	broad.mit.edu	37	3	101540295	101540295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:101540295C>T	uc003dvn.2	+	8	1814	c.1177C>T	c.(1177-1179)CTT>TTT	p.L393F	FAM55C_uc010hpn.2_Missense_Mutation_p.L393F	NM_145037	NP_659474	Q969Y0	FA55C_HUMAN	hypothetical protein LOC91775 precursor	393						extracellular region				ovary(1)|pancreas(1)|skin(1)	3						GGGTCCCTTCCTTGCAGTGGA	0.453													26	40					0	0	0.034045	0	0
ZPLD1	131368	broad.mit.edu	37	3	102196359	102196359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:102196359G>A	uc003dvs.1	+	18	2027	c.1145G>A	c.(1144-1146)GGA>GAA	p.G382E	ZPLD1_uc003dvt.1_Missense_Mutation_p.G398E|ZPLD1_uc011bhg.1_Missense_Mutation_p.G382E	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	382	Helical; (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						GTCATTCTGGGAGTTACGAGC	0.483													94	175					0	0	0.048971	0	0
DPPA4	55211	broad.mit.edu	37	3	109049623	109049623	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:109049623T>A	uc003dxq.3	-	5	482	c.427A>T	c.(427-429)AAA>TAA	p.K143*	DPPA4_uc011bho.1_Intron|DPPA4_uc011bhp.1_Nonsense_Mutation_p.K143*	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	143						nucleus	protein binding			upper_aerodigestive_tract(1)	1						TGCAATGATTTCCGGATTTTG	0.393													44	68					0	0	0.048971	0	0
STXBP5L	9515	broad.mit.edu	37	3	120764302	120764302	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:120764302T>G	uc003eec.3	+	5	530	c.390T>G	c.(388-390)AGT>AGG	p.S130R	STXBP5L_uc011bji.1_Missense_Mutation_p.S130R	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	130	WD 2.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		TCAGTGCAAGTTCAGATGATA	0.348													34	192					0	0	0.086207	0	0
STXBP5L	9515	broad.mit.edu	37	3	121100155	121100155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:121100155C>T	uc003eec.3	+	23	2575	c.2435C>T	c.(2434-2436)TCC>TTC	p.S812F	STXBP5L_uc011bji.1_Missense_Mutation_p.S788F	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	812					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		CGAGAAAATTCCTATAATCGT	0.284													42	83					0	0	0.039052	0	0
GOLGB1	2804	broad.mit.edu	37	3	121411324	121411324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:121411324G>A	uc003eei.3	-	14	6998	c.6872C>T	c.(6871-6873)TCC>TTC	p.S2291F	GOLGB1_uc010hrc.2_Missense_Mutation_p.S2296F|GOLGB1_uc003eej.3_Missense_Mutation_p.S2257F	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	2291	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		TTCTAGCTGGGACAAAAGTTC	0.448													47	82					0	0	0.045515	0	0
IQCB1	9657	broad.mit.edu	37	3	121489364	121489364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:121489364G>A	uc010hre.1	-	15	1840	c.1625C>T	c.(1624-1626)TCC>TTC	p.S542F	IQCB1_uc003eek.2_Missense_Mutation_p.S409F|IQCB1_uc010hrf.1_RNA	NM_001023570	NP_001018864	Q15051	IQCB1_HUMAN	IQ motif containing B1 isoform a	542					cilium assembly|maintenance of organ identity|photoreceptor cell maintenance	centrosome|photoreceptor connecting cilium	calmodulin binding				0				GBM - Glioblastoma multiforme(114;0.0983)		CACAGGCCTGGATCTACTTAG	0.507													112	141					0	0	0.048971	0	0
CASR	846	broad.mit.edu	37	3	121980842	121980842	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:121980842C>T	uc003eev.3	+	4	1332	c.960C>T	c.(958-960)TTC>TTT	p.F320F	CASR_uc003eew.3_Silent_p.F320F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	320	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCATTGGATTCGCTCTGAAGG	0.577													26	44					0	0	0.099896	0	0
ITGB5	3693	broad.mit.edu	37	3	124515313	124515313	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:124515313C>G	uc003eho.2	-	10	1912	c.1615G>C	c.(1615-1617)GAG>CAG	p.E539Q	ITGB5_uc010hrx.2_RNA	NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	539	Extracellular (Potential).|II.|Cysteine-rich tandem repeats.				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		TTGCCAAACTCGCTCTCGAAG	0.597													51	85					0	0	0.048971	0	0
KIAA1257	57501	broad.mit.edu	37	3	128696912	128696912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:128696912C>T	uc003elj.3	-	5	980	c.784G>A	c.(784-786)GAA>AAA	p.E262K	KIAA1257_uc003elg.1_Missense_Mutation_p.E262K|KIAA1257_uc003eli.3_Missense_Mutation_p.E150K	NM_020741	NP_065792	Q9ULG3	K1257_HUMAN	hypothetical protein LOC57501	262											0						GGGTGTTTTTCTGTTTTTTCT	0.463													25	59					0	0	0.099896	0	0
KIAA1257	57501	broad.mit.edu	37	3	128707654	128707654	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:128707654G>A	uc003elj.3	-	3	566	c.370C>T	c.(370-372)CTG>TTG	p.L124L	KIAA1257_uc003elg.1_Silent_p.L124L|KIAA1257_uc003eli.3_Silent_p.L12L	NM_020741	NP_065792	Q9ULG3	K1257_HUMAN	hypothetical protein LOC57501	124											0						TCGTCCGGCAGAAGGAAATAC	0.393													26	38					0	0	0.099896	0	0
COL6A6	131873	broad.mit.edu	37	3	130284118	130284118	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:130284118G>A	uc010htl.2	+	3	973	c.942G>A	c.(940-942)AAG>AAA	p.K314K		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	314	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CCATCAAAAAGCTCAGGAAGG	0.507													63	110					0	0	0.048971	0	0
PLS1	5357	broad.mit.edu	37	3	142403191	142403191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:142403191C>T	uc010huv.2	+	8	1001	c.842C>T	c.(841-843)ACC>ATC	p.T281I	PLS1_uc003euz.2_Missense_Mutation_p.T281I|PLS1_uc003eva.2_Missense_Mutation_p.T281I	NM_001145319	NP_001138791	Q14651	PLSI_HUMAN	plastin 1	281	Actin-binding 1.|CH 2.					cytoplasm	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(1)	1						TACCATCTGACCAATGCAGGA	0.408													31	30					0	0	0.050027	0	0
PAQR9	344838	broad.mit.edu	37	3	142681139	142681139	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:142681139G>A	uc003evg.2	-	1	1040	c.1040C>T	c.(1039-1041)TCG>TTG	p.S347L	PAQR9_uc003evf.1_RNA	NM_198504	NP_940906	Q6ZVX9	PAQR9_HUMAN	progestin and adipoQ receptor family member IX	347	Helical; (Potential).					integral to membrane	receptor activity				0						CACAGTACCCGAGAAAGTGGG	0.567													59	86					0	0	0.048971	0	0
RNF13	11342	broad.mit.edu	37	3	149629785	149629785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:149629785C>T	uc003exn.3	+	8	1305	c.521C>T	c.(520-522)CCA>CTA	p.P174L	RNF13_uc003exp.3_Missense_Mutation_p.P174L|RNF13_uc010hvh.2_Missense_Mutation_p.P55L	NM_007282	NP_009213	O43567	RNF13_HUMAN	ring finger protein 13	174	Lumenal (Potential).				protein autoubiquitination	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane|nuclear inner membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		all_neural(597;0.0138)|Myeloproliferative disorder(1037;0.0255)	LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			ATCTTAGTTCCAGAATTTAGT	0.318													32	58					0	0	0.045705	0	0
TSC22D2	9819	broad.mit.edu	37	3	150127274	150127275	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:150127274_150127275CC>TT	uc003exv.2	+	1	487_488	c.137_138CC>TT	c.(136-138)TCC>TTT	p.S46F	TSC22D2_uc003exw.2_RNA|TSC22D2_uc003exx.2_Missense_Mutation_p.S46F	NM_014779	NP_055594	O75157	T22D2_HUMAN	TSC22 domain family, member 2	46							sequence-specific DNA binding transcription factor activity			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			GACGTCTCCTCCGAGATTTTCG	0.604													11	20					0	0	0.004672	0	0
P2RY13	53829	broad.mit.edu	37	3	151046683	151046683	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:151046683A>C	uc003eyv.2	-	2	182	c.161T>G	c.(160-162)GTT>GGT	p.V54G	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_176894	NP_795713	Q9BPV8	P2Y13_HUMAN	purinergic receptor P2Y, G-protein coupled, 13	54	Helical; Name=1; (Potential).					integral to membrane|plasma membrane				ovary(3)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0189)|Lung(72;0.0278)			GGTCAAGAAAACCACTGTGTA	0.507													56	115					0	0	0.048971	0	0
SI	6476	broad.mit.edu	37	3	164780204	164780204	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:164780204G>A	uc003fei.2	-	9	1037	c.975C>T	c.(973-975)ATC>ATT	p.I325I		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	325	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CTCCTAGAAGGATGTAAAAAT	0.313										HNSCC(35;0.089)			25	39					0	0	0.034045	0	0
SI	6476	broad.mit.edu	37	3	164785137	164785137	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:164785137C>T	uc003fei.2	-	6	688	c.626G>A	c.(625-627)GGT>GAT	p.G209D		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	209	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CAAAGTTTTACCGTTGCTTTT	0.289										HNSCC(35;0.089)			24	32					0	0	0.076483	0	0
MECOM	2122	broad.mit.edu	37	3	168833340	168833340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:168833340C>T	uc003ffi.3	-	7	2025	c.1756G>A	c.(1756-1758)GAT>AAT	p.D586N	MECOM_uc010hwk.1_Missense_Mutation_p.D609N|MECOM_uc003ffj.3_Missense_Mutation_p.D651N|MECOM_uc011bpi.1_Missense_Mutation_p.D587N|MECOM_uc003ffn.3_Missense_Mutation_p.D586N|MECOM_uc003ffk.2_Missense_Mutation_p.D586N|MECOM_uc003ffl.2_Missense_Mutation_p.D746N|MECOM_uc011bpj.1_Missense_Mutation_p.D774N|MECOM_uc011bpk.1_Missense_Mutation_p.D576N|MECOM_uc010hwn.2_Missense_Mutation_p.D774N	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	586	CTBP-binding motif 2 (By similarity).			DL->AS: Partial loss of interaction with CTBP1. Loss of interaction with CTBP1; when associated with 555-A-S-556.	apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						ATACTTAGATCCAGGGGCTGG	0.532													22	38					0	0	0.030593	0	0
TNIK	23043	broad.mit.edu	37	3	170879075	170879075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:170879075C>T	uc003fhh.2	-	11	1345	c.1000G>A	c.(1000-1002)GAC>AAC	p.D334N	TNIK_uc003fhi.2_Missense_Mutation_p.D334N|TNIK_uc003fhj.2_Missense_Mutation_p.D334N|TNIK_uc003fhk.2_Missense_Mutation_p.D334N|TNIK_uc003fhl.2_Missense_Mutation_p.D334N|TNIK_uc003fhm.2_Missense_Mutation_p.D334N|TNIK_uc003fhn.2_Missense_Mutation_p.D334N|TNIK_uc003fho.2_Missense_Mutation_p.D334N	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	334	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			TCTCCTGAGTCATTCTCCTCC	0.328													19	36					0	0	0.062417	0	0
MCF2L2	23101	broad.mit.edu	37	3	183097194	183097194	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:183097194G>A	uc003fli.1	-	3	256	c.166C>T	c.(166-168)CGA>TGA	p.R56*	MCF2L2_uc003flj.1_Nonsense_Mutation_p.R56*|MCF2L2_uc003flp.1_Nonsense_Mutation_p.R91*	NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	56	CRAL-TRIO.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			TCCTCCCCTCGGCCTCCTGCA	0.498													17	24					0	0	0.033300	0	0
ABCF3	55324	broad.mit.edu	37	3	183906717	183906717	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:183906717G>A	uc003fmz.2	+	9	1051	c.918G>A	c.(916-918)AGG>AGA	p.R306R	ABCF3_uc003fna.2_Silent_p.R300R|ABCF3_uc003fnb.2_5'UTR	NM_018358	NP_060828	Q9NUQ8	ABCF3_HUMAN	ATP-binding cassette, sub-family F (GCN20),	306	ABC transporter 1.						ATP binding|ATPase activity			ovary(3)|lung(1)	4	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.35e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TCTCTACTAGGGCATCAGTCA	0.517													30	58					0	0	0.054565	0	0
EPHB3	2049	broad.mit.edu	37	3	184294969	184294969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:184294969C>T	uc003foz.2	+	5	1789	c.1352C>T	c.(1351-1353)GCT>GTT	p.A451V		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	451	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			ACAAACCAGGCTGGTGAGGAG	0.617													7	15					0	0	0.029380	0	0
LIPH	200879	broad.mit.edu	37	3	185226631	185226631	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:185226631C>T	uc003fpm.2	-	10	1413	c.1303G>A	c.(1303-1305)GAA>AAA	p.E435K	LIPH_uc010hyh.2_Missense_Mutation_p.E401K	NM_139248	NP_640341	Q8WWY8	LIPH_HUMAN	lipase, member H precursor	435					lipid catabolic process	extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(1)|pancreas(1)	2	all_cancers(143;8.87e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			TCAACGTTTTCCATCAGGACA	0.373													136	202					0	0	0.048971	0	0
TMEM175	84286	broad.mit.edu	37	4	949636	949636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:949636G>A	uc003gbq.2	+	10	898	c.800G>A	c.(799-801)GGA>GAA	p.G267E	TMEM175_uc010ibl.1_Missense_Mutation_p.G267E|TMEM175_uc003gbp.1_Missense_Mutation_p.G185E|TMEM175_uc003gbr.2_Missense_Mutation_p.G185E|TMEM175_uc003gbu.2_Missense_Mutation_p.G185E|TMEM175_uc003gbs.2_Missense_Mutation_p.G150E|TMEM175_uc003gbt.2_Missense_Mutation_p.G150E|TMEM175_uc003gbv.2_Missense_Mutation_p.G150E|TMEM175_uc010ibm.2_Missense_Mutation_p.G83E	NM_032326	NP_115702	Q9BSA9	TM175_HUMAN	transmembrane protein 175	267						integral to membrane					0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			TTCAGCGACGGAGTCTACGCC	0.622													22	46					0	0	0.083992	0	0
TACC3	10460	broad.mit.edu	37	4	1746492	1746493	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:1746492_1746493CC>TT	uc003gdo.2	+	15	2492_2493	c.2384_2385CC>TT	c.(2383-2385)GCC>GTT	p.A795V	TACC3_uc003gdp.2_Missense_Mutation_p.A435V|TACC3_uc010ica.2_Missense_Mutation_p.A216V	NM_006342	NP_006333	Q9Y6A5	TACC3_HUMAN	transforming, acidic coiled-coil containing	795	Potential.					centrosome				ovary(1)|central_nervous_system(1)	2		Breast(71;0.212)|all_epithelial(65;0.241)	OV - Ovarian serous cystadenocarcinoma(23;0.00765)|Epithelial(3;0.0126)			GAAGCGTTGGCCCTCCAGGCCA	0.678													18	36					0	0	0.004672	0	0
HTT	3064	broad.mit.edu	37	4	3234954	3234955	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:3234954_3234955CC>TT	uc011bvq.1	+	62	8481_8482	c.8336_8337CC>TT	c.(8335-8337)CCC>CTT	p.P2779L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2777					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		AGCCACCTGCCCAGCAGGGTTG	0.639													70	98					0	0	0.004672	0	0
SLIT2	9353	broad.mit.edu	37	4	20620554	20620554	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:20620554C>T	uc003gpr.1	+	37	4716	c.4512C>T	c.(4510-4512)TTC>TTT	p.F1504F	SLIT2_uc003gps.1_Silent_p.F1496F	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1504	CTCK.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						AATACTCTTTCGAATGCACTG	0.567													18	38					0	0	0.049695	0	0
RFC1	5981	broad.mit.edu	37	4	39352971	39352971	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:39352971G>A	uc003gty.1	-	2	263	c.129C>T	c.(127-129)ATC>ATT	p.I43I	RFC1_uc003gtx.1_Silent_p.I43I|RFC1_uc003gtz.1_5'UTR	NM_002913	NP_002904	P35251	RFC1_HUMAN	replication factor C large subunit	43					DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|telomere maintenance via telomerase|transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|enzyme activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4						AACTAACCTTGATTTCCTTTA	0.239													20	18					0	0	0.069288	0	0
GABRG1	2565	broad.mit.edu	37	4	46066480	46066480	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:46066480G>A	uc003gxb.2	-	5	755	c.603C>T	c.(601-603)TCC>TCT	p.S201S		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	201	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		CCAGTGGACAGGAATGTTCAT	0.269													59	68					0	0	0.048971	0	0
GABRA4	2557	broad.mit.edu	37	4	46994906	46994906	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:46994906G>A	uc003gxg.2	-	2	283	c.144C>T	c.(142-144)TTC>TTT	p.F48F		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	48	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GGATGCGGGTGAAATTTTCTG	0.448													26	50					0	0	0.108266	0	0
ATP10D	57205	broad.mit.edu	37	4	47538862	47538862	+	Missense_Mutation	SNP	C	G	G	rs150738679		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:47538862C>G	uc003gxk.1	+	9	1467	c.1303C>G	c.(1303-1305)CTC>GTC	p.L435V	ATP10D_uc003gxl.1_5'UTR|ATP10D_uc003gxj.3_Missense_Mutation_p.L420V	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	435	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						GATTCAGTACCTCTTTTCCGA	0.418													16	32					0	0	0.024245	0	0
ATP10D	57205	broad.mit.edu	37	4	47593286	47593286	+	Missense_Mutation	SNP	C	T	T	rs112565536		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:47593286C>T	uc003gxk.1	+	23	4333	c.4169C>T	c.(4168-4170)TCC>TTC	p.S1390F	ATP10D_uc003gxl.1_Missense_Mutation_p.S638F	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	1390	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						TCAGCAAGTTCCTGTGCTATT	0.453													82	127					0	0	0.048971	0	0
CNGA1	1259	broad.mit.edu	37	4	47953412	47953412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:47953412G>A	uc003gxt.3	-	5	460	c.194C>T	c.(193-195)TCC>TTC	p.S65F	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.S134F|CNGA1_uc003gxv.1_Missense_Mutation_p.S65F	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	65	Cytoplasmic (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						ATAACTAAAGGAACCCCTTGC	0.403													21	41					0	0	0.069288	0	0
CWH43	80157	broad.mit.edu	37	4	48990672	48990672	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:48990672G>A	uc003gyv.2	+	2	404	c.222G>A	c.(220-222)AGG>AGA	p.R74R	CWH43_uc011bzl.1_Silent_p.R47R	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	74					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						CCCTGCTGAGGATAATCACTA	0.303													7	22					0	0	0.029380	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69093715	69093715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:69093715C>T	uc003hdw.3	-	10	1301	c.1165G>A	c.(1165-1167)GAT>AAT	p.D389N		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	389	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						CCACATCCATCACCCCAGCTT	0.383													21	38					0	0	0.049695	0	0
SULT1E1	6783	broad.mit.edu	37	4	70713469	70713469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:70713469C>T	uc003heo.2	-	6	651	c.538G>A	c.(538-540)GAA>AAA	p.E180K		NM_005420	NP_005411	P49888	ST1E1_HUMAN	estrogen sulfotransferase	180					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol|nuclear membrane	estrone sulfotransferase activity|flavonol 3-sulfotransferase activity|steroid binding|steroid sulfotransferase activity			ovary(1)	1						TTTCCCTTTTCCCACCAAGAT	0.368													46	72					0	0	0.048971	0	0
SULT1E1	6783	broad.mit.edu	37	4	70721127	70721127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:70721127C>T	uc003heo.2	-	3	276	c.163G>A	c.(163-165)GAA>AAA	p.E55K	SULT1E1_uc010ihv.1_Missense_Mutation_p.E55K	NM_005420	NP_005411	P49888	ST1E1_HUMAN	estrogen sulfotransferase	55					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol|nuclear membrane	estrone sulfotransferase activity|flavonol 3-sulfotransferase activity|steroid binding|steroid sulfotransferase activity			ovary(1)	1						TACACAATTTCACTAACCCAG	0.358													20	39					0	0	0.062417	0	0
SEPT11	55752	broad.mit.edu	37	4	77941743	77941743	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:77941743C>T	uc003hkj.2	+	7	1035	c.873C>T	c.(871-873)ACC>ACT	p.T291T	SEPT11_uc010ijh.1_Silent_p.T283T|SEPT11_uc011cca.1_Silent_p.T301T|SEPT11_uc003hkk.1_Silent_p.T91T	NM_018243	NP_060713	Q9NVA2	SEP11_HUMAN	septin 11	291					cell cycle|cell division|protein heterooligomerization	axon|cell junction|dendritic spine|septin complex|stress fiber|synapse	GTP binding|protein binding				0						AGACTCACACCCGCCACTATG	0.478													24	22					0	0	0.091800	0	0
PRKG2	5593	broad.mit.edu	37	4	82125774	82125774	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:82125774G>A	uc003hmh.2	-	1	442	c.428C>T	c.(427-429)TCC>TTC	p.S143F	PRKG2_uc011cch.1_Missense_Mutation_p.S143F	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	143					platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						TTTCTCAAAGGAAAATTCAGG	0.453													142	350					0	0	0.048971	0	0
HNRPDL	9987	broad.mit.edu	37	4	83349281	83349281	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:83349281T>C	uc003hmr.2	-	3	1199	c.664A>G	c.(664-666)AGG>GGG	p.R222G	ENOPH1_uc003hmv.2_5'Flank|ENOPH1_uc003hmw.2_5'Flank|ENOPH1_uc003hmx.2_5'Flank|HNRPDL_uc003hmq.2_RNA|HNRPDL_uc003hms.2_RNA|HNRPDL_uc003hmt.2_Missense_Mutation_p.R222G	NM_031372	NP_112740	O14979	HNRDL_HUMAN	heterogeneous nuclear ribonucleoprotein D-like	222	RRM 1.				regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	cytoplasm|heterogeneous nuclear ribonucleoprotein complex	double-stranded DNA binding|nucleotide binding|poly(A) RNA binding|protein binding|single-stranded DNA binding			skin(1)	1		Hepatocellular(203;0.114)				GCTTTGGCCCTTTTGGGATCT	0.388													3	87					0	0	0.004672	0	0
HPSE	10855	broad.mit.edu	37	4	84227368	84227368	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:84227368G>A	uc003hoj.3	-	9	1293	c.1194C>T	c.(1192-1194)TTC>TTT	p.F398F	HPSE_uc010ika.2_Silent_p.F340F|HPSE_uc011ccq.1_RNA|HPSE_uc011ccr.1_Intron|HPSE_uc011ccs.1_Silent_p.F141F|HPSE_uc011cct.1_Intron|HPSE_uc003hok.3_Silent_p.F398F	NM_001098540	NP_001092010	Q9Y251	HPSE_HUMAN	heparanase precursor	398					carbohydrate metabolic process|cell adhesion|proteoglycan metabolic process	extracellular region|lysosomal membrane|nucleus	beta-glucuronidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.114)		COAD - Colon adenocarcinoma(81;0.141)	Heparin(DB01109)	GTAAAGGATCGAAGTTTTCAT	0.428													29	57					0	0	0.050027	0	0
AGPAT9	84803	broad.mit.edu	37	4	84516095	84516095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:84516095G>A	uc003how.2	+	8	1054	c.836G>A	c.(835-837)CGA>CAA	p.R279Q	AGPAT9_uc003hox.2_Missense_Mutation_p.R279Q|AGPAT9_uc003hoy.2_Missense_Mutation_p.R279Q	NM_032717	NP_116106	Q53EU6	GPAT3_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 9	279					phospholipid biosynthetic process|regulation of TOR signaling cascade|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	glycerol-3-phosphate O-acyltransferase activity			skin(1)	1		Hepatocellular(203;0.114)				ATGAAGGATCGACACCTGGTT	0.478													69	81					0	0	0.048971	0	0
KLHL8	57563	broad.mit.edu	37	4	88084715	88084715	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:88084715G>A	uc011cdb.1	-	10	2204	c.1819C>T	c.(1819-1821)CGA>TGA	p.R607*	KLHL8_uc003hql.1_Nonsense_Mutation_p.R607*|KLHL8_uc003hqm.1_Nonsense_Mutation_p.R531*|KLHL8_uc003hqn.1_Nonsense_Mutation_p.R424*|KLHL8_uc010ikj.1_Nonsense_Mutation_p.R256*	NM_020803	NP_065854	Q9P2G9	KLHL8_HUMAN	kelch-like 8	607											0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		CCTACATCTCGAATTTGGCTA	0.428													53	78					0	0	0.048971	0	0
SPARCL1	8404	broad.mit.edu	37	4	88414772	88414772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:88414772C>T	uc010ikm.2	-	5	1752	c.1180G>A	c.(1180-1182)GAA>AAA	p.E394K	SPARCL1_uc011cdc.1_Missense_Mutation_p.E269K|SPARCL1_uc003hqs.3_Missense_Mutation_p.E394K|SPARCL1_uc011cdd.1_Missense_Mutation_p.E269K|SPARCL1_uc003hqt.2_Missense_Mutation_p.E394K	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	394					signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		CCTATATTTTCATTTTCATGT	0.408													19	42					0	0	0.043863	0	0
IBSP	3381	broad.mit.edu	37	4	88723662	88723662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:88723662G>A	uc003hqx.3	+	3	155	c.57G>A	c.(55-57)ATG>ATA	p.M19I		NM_004967	NP_004958	P21815	SIAL_HUMAN	integrin-binding sialoprotein precursor	19					biomineral tissue development|cell adhesion|ossification						0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000333)|COAD - Colon adenocarcinoma(81;0.154)		TAAAACAGATGAAAAATTTGC	0.274													18	26					0	0	0.033300	0	0
GRID2	2895	broad.mit.edu	37	4	94006369	94006369	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:94006369C>T	uc011cdt.1	+	3	726	c.468C>T	c.(466-468)ATC>ATT	p.I156I	GRID2_uc010ikx.2_Silent_p.I156I|GRID2_uc011cdu.1_Intron|GRID2_uc011cdv.1_RNA	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	156	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	ATGATGTTATCCTAAGAGTGG	0.438													40	82					0	0	0.039052	0	0
GRID2	2895	broad.mit.edu	37	4	94436462	94436462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:94436462C>T	uc011cdt.1	+	13	2351	c.2093C>T	c.(2092-2094)CCT>CTT	p.P698L	GRID2_uc011cdu.1_Missense_Mutation_p.P603L	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	698	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GGACTGAATCCTTTTGAGAGG	0.483													33	36					0	0	0.059317	0	0
UNC5C	8633	broad.mit.edu	37	4	96124094	96124094	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:96124094C>T	uc003htp.1	-	12	2078	c.1924G>A	c.(1924-1926)GAA>AAA	p.E642K	UNC5C_uc010ilc.1_Missense_Mutation_p.E661K	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	642	Cytoplasmic (Potential).				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		GTGAAGTTTTCCTCCCCGACC	0.602													25	50					0	0	0.076483	0	0
ADH7	131	broad.mit.edu	37	4	100350697	100350697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:100350697G>A	uc003huv.1	-	2	247	c.148C>T	c.(148-150)CGC>TGC	p.R50C		NM_000673	NP_000664	P40394	ADH7_HUMAN	class IV alcohol dehydrogenase, mu or sigma	50					ethanol oxidation|fatty acid omega-oxidation|response to bacterium|response to ethanol|xenobiotic metabolic process	cytosol|soluble fraction	alcohol dehydrogenase activity, zinc-dependent|aldehyde oxidase activity|ethanol binding|receptor antagonist activity|retinol binding|retinol dehydrogenase activity			lung(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.75e-08)	NADH(DB00157)	ACCTTAATGCGAACTTCTTTA	0.403													10	20					0	0	0.080935	0	0
SLC39A8	64116	broad.mit.edu	37	4	103225507	103225507	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:103225507G>A	uc003hwb.1	-	5	1336	c.807C>T	c.(805-807)ATC>ATT	p.I269I	SLC39A8_uc011ceo.1_Silent_p.I269I|SLC39A8_uc003hwa.1_Silent_p.I202I|SLC39A8_uc003hwc.2_Silent_p.I269I	NM_022154	NP_071437	Q9C0K1	S39A8_HUMAN	solute carrier family 39 (zinc transporter),	269	Extracellular (Potential).					integral to membrane|organelle membrane|plasma membrane	zinc ion transmembrane transporter activity				0		Hepatocellular(203;0.217)		all cancers(1;9.78e-10)|OV - Ovarian serous cystadenocarcinoma(123;1.52e-09)|GBM - Glioblastoma multiforme(1;0.000142)		TATCAAAATGGATATGTCCAT	0.358													21	39					0	0	0.062417	0	0
ENPEP	2028	broad.mit.edu	37	4	111474477	111474477	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:111474477G>A	uc003iab.3	+	18	2850	c.2508G>A	c.(2506-2508)TTG>TTA	p.L836L		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	836	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	TTAGGTATTTGGATTTGCTCA	0.348													47	68					0	0	0.048971	0	0
NDST4	64579	broad.mit.edu	37	4	115856476	115856476	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:115856476C>T	uc003ibu.2	-	6	2101	c.1422G>A	c.(1420-1422)CAG>CAA	p.Q474Q	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	474	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		ACCCACAAGTCTGTCGAGGGA	0.398													19	40					0	0	0.055883	0	0
INTU	27152	broad.mit.edu	37	4	128584651	128584651	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:128584651T>C	uc003ifk.1	+	4	954	c.884T>C	c.(883-885)GTT>GCT	p.V295A	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	295										ovary(1)	1						GGAGAAGAGGTTGAAGGTATC	0.448													51	77					0	0	0.048971	0	0
ZNF827	152485	broad.mit.edu	37	4	146823351	146823351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:146823351G>A	uc003ikn.2	-	2	1108	c.1060C>T	c.(1060-1062)CCT>TCT	p.P354S	ZNF827_uc003ikm.2_Missense_Mutation_p.P354S|ZNF827_uc010iox.2_Intron	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	354	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					CTTCCCTTAGGAACTGGGAGT	0.284													16	37					0	0	0.062417	0	0
ARHGAP10	79658	broad.mit.edu	37	4	148968112	148968112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:148968112C>T	uc003ilf.2	+	20	1937	c.1937C>T	c.(1936-1938)CCC>CTC	p.P646L	ARHGAP10_uc003ilg.2_Missense_Mutation_p.P295L|ARHGAP10_uc003ilh.2_Missense_Mutation_p.P227L|ARHGAP10_uc003ili.2_Missense_Mutation_p.P79L	NM_024605	NP_078881	A1A4S6	RHG10_HUMAN	Rho GTPase activating protein 10	646					apoptosis|filopodium assembly|regulation of apoptosis|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm|plasma membrane	cytoskeletal adaptor activity|SH3 domain binding			skin(2)|pancreas(1)|lung(1)	4	all_hematologic(180;0.151)	Renal(17;0.0166)		GBM - Glioblastoma multiforme(119;0.0423)		TCCCCGTCTCCCGTGACTACA	0.522													39	67					0	0	0.104719	0	0
DCHS2	54798	broad.mit.edu	37	4	155253927	155253927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:155253927G>A	uc003inw.2	-	9	1936	c.1936C>T	c.(1936-1938)CGG>TGG	p.R646W	DCHS2_uc003inx.2_Missense_Mutation_p.R1145W	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	646	Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		AACTGTCGCCGCAAATAAATC	0.502													4	102					0	0	0.014758	0	0
GLRB	2743	broad.mit.edu	37	4	158091827	158091827	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:158091827T>A	uc003ipj.2	+	10	1643	c.1441T>A	c.(1441-1443)TTT>ATT	p.F481I		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	481	Helical; (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	AAGAGCATTGTTTCCTTTCTG	0.353													33	67					0	0	0.064281	0	0
GRIA2	2891	broad.mit.edu	37	4	158283982	158283982	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:158283982T>A	uc003ipm.3	+	15	2897	c.2438T>A	c.(2437-2439)GTT>GAT	p.V813D	GRIA2_uc011cit.1_Missense_Mutation_p.V766D|GRIA2_uc003ipl.3_Missense_Mutation_p.V813D|GRIA2_uc003ipk.3_Missense_Mutation_p.V766D|GRIA2_uc011civ.1_RNA|GRIA2_uc011ciw.1_RNA|GRIA2_uc011cix.1_3'UTR|GRIA2_uc011ciy.1_3'UTR|GRIA2_uc011ciz.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	813	Helical; (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	CTGAGCAACGTTGCTGGAGTA	0.463													34	59					0	0	0.054565	0	0
AADAT	51166	broad.mit.edu	37	4	170994383	170994383	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:170994383G>A	uc003isr.2	-	5	900	c.558C>T	c.(556-558)CCC>CCT	p.P186P	AADAT_uc003iss.2_Silent_p.P186P|AADAT_uc003ist.2_Silent_p.P190P	NM_016228	NP_057312	Q8N5Z0	AADAT_HUMAN	kynurenine aminotransferase II	186					2-oxoglutarate metabolic process|biosynthetic process|glutamate metabolic process|lysine catabolic process	mitochondrial matrix	2-aminoadipate transaminase activity|kynurenine-oxoglutarate transaminase activity|protein homodimerization activity				0		Prostate(90;0.00601)|Renal(120;0.0183)|all_neural(102;0.122)|Melanoma(52;0.17)		GBM - Glioblastoma multiforme(119;0.0355)|LUSC - Lung squamous cell carcinoma(193;0.118)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	TGTTTTTCTGGGGATTCTTTG	0.398													48	94					0	0	0.048971	0	0
GPM6A	2823	broad.mit.edu	37	4	176594877	176594877	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:176594877T>C	uc003iuf.2	-	3	1145	c.341A>G	c.(340-342)TAT>TGT	p.Y114C	GPM6A_uc011ckj.1_Missense_Mutation_p.Y107C|GPM6A_uc003iug.2_Missense_Mutation_p.Y114C|GPM6A_uc003iuh.2_Missense_Mutation_p.Y103C	NM_201591	NP_963885	P51674	GPM6A_HUMAN	glycoprotein M6A isoform 2	114	Cytoplasmic (Potential).					cell surface|integral to membrane					0		Breast(14;7.35e-05)|Melanoma(52;0.00909)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;9.21e-19)|Epithelial(43;3.01e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.02e-09)|STAD - Stomach adenocarcinoma(60;0.00083)|GBM - Glioblastoma multiforme(59;0.00168)|LUSC - Lung squamous cell carcinoma(193;0.0388)		GAAATCCCCATAGAGATCTTT	0.423													19	29					0	0	0.049695	0	0
FAM149A	25854	broad.mit.edu	37	4	187084730	187084730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr4:187084730C>T	uc003iyt.3	+	10	1565	c.986C>T	c.(985-987)TCA>TTA	p.S329L	FAM149A_uc011cla.1_Missense_Mutation_p.S329L|FAM149A_uc003iyu.3_Missense_Mutation_p.S329L|FAM149A_uc010isl.2_Missense_Mutation_p.S329L|FAM149A_uc011clb.1_Missense_Mutation_p.S329L	NM_015398	NP_056213	A5PLN7	F149A_HUMAN	hypothetical protein LOC25854	620										breast(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.19e-10)|BRCA - Breast invasive adenocarcinoma(30;1.22e-05)|GBM - Glioblastoma multiforme(59;0.000122)|STAD - Stomach adenocarcinoma(60;0.000288)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.166)		GCTTCAGATTCACAGAGACTA	0.478													15	50					0	0	0.024245	0	0
AHRR	57491	broad.mit.edu	37	5	434306	434306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:434306C>T	uc003jav.2	+	12	1561	c.1517C>T	c.(1516-1518)CCC>CTC	p.P506L	AHRR_uc003jaw.2_Missense_Mutation_p.P484L|AHRR_uc010isy.2_Missense_Mutation_p.P334L|AHRR_uc010isz.2_Missense_Mutation_p.P484L|AHRR_uc003jax.2_Missense_Mutation_p.P247L|AHRR_uc003jay.2_Missense_Mutation_p.P344L|AHRR_uc003jaz.2_Missense_Mutation_p.P105L	NM_020731	NP_065782	A9YTQ3	AHRR_HUMAN	arylhydrocarbon receptor repressor	488					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			breast(2)	2			Epithelial(17;0.0011)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00354)|Lung(60;0.0863)			TGCCACTTTCCCCAGAGGAGC	0.652													12	10					0	0	0.093190	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5146324	5146324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:5146324G>A	uc003jdl.2	+	3	395	c.257G>A	c.(256-258)AGA>AAA	p.R86K	ADAMTS16_uc003jdk.1_Missense_Mutation_p.R86K|ADAMTS16_uc003jdj.1_Missense_Mutation_p.R86K	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	86					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						CAGCGGCGGAGAAGAGCAGTG	0.542													15	49					0	0	0.049695	0	0
CTNND2	1501	broad.mit.edu	37	5	11236868	11236868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:11236868C>T	uc003jfa.1	-	10	1841	c.1696G>A	c.(1696-1698)GTC>ATC	p.V566I	CTNND2_uc010itt.2_Missense_Mutation_p.V475I|CTNND2_uc011cmy.1_Missense_Mutation_p.V229I|CTNND2_uc011cmz.1_Missense_Mutation_p.V133I|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.V133I	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	566	ARM 2.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TTAGACTGGACCGAGGGAAAC	0.483													18	109					0	0	0.038395	0	0
DNAH5	1767	broad.mit.edu	37	5	13737548	13737548	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:13737548C>T	uc003jfd.2	-	66	11310	c.11268G>A	c.(11266-11268)AGG>AGA	p.R3756R	DNAH5_uc003jfc.2_Intron	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3756	Potential.|AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTTCCTTCATCCTTCTTTTGT	0.373									Kartagener_syndrome				71	46					0	0	0.048971	0	0
DNAH5	1767	broad.mit.edu	37	5	13862717	13862717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:13862717G>A	uc003jfd.2	-	29	4778	c.4736C>T	c.(4735-4737)TCG>TTG	p.S1579L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1579	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GATGATTTCCGAGGTACTGTC	0.458									Kartagener_syndrome				17	65					0	0	0.033300	0	0
FBXL7	23194	broad.mit.edu	37	5	15928474	15928474	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:15928474C>T	uc003jfn.1	+	3	1084	c.603C>T	c.(601-603)GAC>GAT	p.D201D		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	201	LRR 2.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						GGCTCACAGACCGAGGGCTGT	0.597													8	25					0	0	0.047766	0	0
CDH18	1016	broad.mit.edu	37	5	19520765	19520765	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:19520765C>T	uc003jgc.2	-	9	1889	c.1512_splice	c.e9+1	p.Q504_splice	CDH18_uc003jgd.2_Splice_Site_p.Q504_splice|CDH18_uc011cnm.1_Splice_Site_p.Q504_splice	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein						adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					AATTAACTTACCTGGCCAGGC	0.383													14	15					0	0	0.105934	0	0
Unknown	0	broad.mit.edu	37	5	33162742	33162742	+	RNA	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:33162742G>A	uc003jhx.2	+	1		c.477G>A								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		ATGATGAAAGGAAAAAGAATG	0.478													4	9					0	0	0.009096	0	0
PRLR	5618	broad.mit.edu	37	5	35065428	35065428	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:35065428C>T	uc003jjm.2	-	10	2162	c.1632G>A	c.(1630-1632)AAG>AAA	p.K544K	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Silent_p.K443K	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	544	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TGGCATACTCCTTATTGTTCT	0.478													34	37					0	0	0.054565	0	0
SPEF2	79925	broad.mit.edu	37	5	35763793	35763793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:35763793G>A	uc003jjo.2	+	26	3901	c.3790G>A	c.(3790-3792)GTA>ATA	p.V1264I	SPEF2_uc003jjp.1_Missense_Mutation_p.V750I	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1264					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTCTTTAGCAGTATCTCACAT	0.408													36	34					0	0	0.086207	0	0
LMBRD2	92255	broad.mit.edu	37	5	36117840	36117840	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:36117840G>A	uc003jkb.1	-	10	1714	c.1299C>T	c.(1297-1299)ATC>ATT	p.I433I		NM_001007527	NP_001007528	Q68DH5	LMBD2_HUMAN	LMBR1 domain containing 2	433	Helical; (Potential).					integral to membrane					0	all_lung(31;0.000146)		Epithelial(62;0.0396)|Lung(74;0.111)|all cancers(62;0.115)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AACTGACCTCGATATAAATAT	0.333													10	14					0	0	0.080935	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64520756	64520756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:64520756C>T	uc003jtp.2	-	17	3000	c.2186G>A	c.(2185-2187)AGG>AAG	p.R729K	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Missense_Mutation_p.R350K	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	729	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		CTCACCTCCCCTGGGCAGTGA	0.493													18	16					0	0	0.033300	0	0
MARVELD2	153562	broad.mit.edu	37	5	68715618	68715618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:68715618C>T	uc003jwq.2	+	2	465	c.406C>T	c.(406-408)CCC>TCC	p.P136S	MARVELD2_uc010ixf.2_Missense_Mutation_p.P136S|MARVELD2_uc003jwr.1_Missense_Mutation_p.P136S|MARVELD2_uc003jws.1_RNA	NM_001038603	NP_001033692	Q8N4S9	MALD2_HUMAN	MARVEL domain containing 2 isoform 1	136	Cytoplasmic (Potential).				sensory perception of sound	integral to membrane|tight junction					0		Lung NSC(167;0.000937)|Prostate(74;0.0187)|Ovarian(174;0.16)		OV - Ovarian serous cystadenocarcinoma(47;7.31e-57)|Epithelial(20;1.05e-52)|all cancers(19;2.63e-48)|Lung(70;0.0183)		CTGCAAAGATCCCTACGGAGG	0.542													9	39					0	0	0.047766	0	0
CMYA5	202333	broad.mit.edu	37	5	79025595	79025595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:79025595C>T	uc003kgc.2	+	2	1079	c.1007C>T	c.(1006-1008)TCT>TTT	p.S336F		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	336						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AATGCCACATCTGCATTGGAG	0.453													16	37					0	0	0.024245	0	0
RASGRF2	5924	broad.mit.edu	37	5	80409725	80409725	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:80409725G>A	uc003kha.1	+	15	2456	c.2456G>A	c.(2455-2457)CGA>CAA	p.R819Q	RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	819					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity	p.R819*(1)		breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		AAGCTAAAACGAAGTATTCAA	0.488													15	31					0	0	0.033300	0	0
GPR98	84059	broad.mit.edu	37	5	89924493	89924493	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:89924493G>A	uc003kju.2	+	8	1449	c.1353G>A	c.(1351-1353)CCG>CCA	p.P451P	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	451	Extracellular (Potential).|Calx-beta 4.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATATCAGACCGAGCTCTGGAG	0.478													34	57					0	0	0.069456	0	0
TTC37	9652	broad.mit.edu	37	5	94863846	94863846	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:94863846G>A	uc003klb.2	-	13	1275	c.1005C>T	c.(1003-1005)ATC>ATT	p.I335I	TTC37_uc010jbf.1_Silent_p.I287I	NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	335	TPR 4.						binding			ovary(3)|pancreas(1)	4						GATTATCTACGATCTTCAGAG	0.338													26	24					0	0	0.108266	0	0
C5orf30	90355	broad.mit.edu	37	5	102611805	102611805	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:102611805T>C	uc003kog.1	+	3	454	c.185T>C	c.(184-186)GTT>GCT	p.V62A	C5orf30_uc003koh.1_Missense_Mutation_p.V62A	NM_033211	NP_149988	Q96GV9	CE030_HUMAN	hypothetical protein LOC90355	62											0		all_cancers(142;2.22e-05)|all_epithelial(76;9.54e-08)|Prostate(80;0.0174)|Colorectal(57;0.0551)|Ovarian(225;0.11)|Lung NSC(167;0.136)|all_lung(232;0.18)		Epithelial(69;2.84e-14)|COAD - Colon adenocarcinoma(37;0.00762)		AACTATTTGGTTGGCTTCACG	0.567													26	30					0	0	0.083992	0	0
AQPEP	206338	broad.mit.edu	37	5	115339027	115339027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:115339027G>A	uc003kro.2	+	12	2151	c.1987G>A	c.(1987-1989)GAT>AAT	p.D663N	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	663	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						AGTTAATTATGATAAATTAGG	0.284													10	60					0	0	0.080935	0	0
FBN2	2201	broad.mit.edu	37	5	127730852	127730852	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:127730852G>A	uc003kuu.2	-	9	1633	c.1194C>T	c.(1192-1194)ATC>ATT	p.I398I	FBN2_uc003kuv.2_Silent_p.I365I	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	398	TB 2.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GAATGGTTCCGATGCCCCAGC	0.557													25	23					0	0	0.083992	0	0
SHROOM1	134549	broad.mit.edu	37	5	132158506	132158506	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:132158506G>A	uc003kxx.2	-	10	3346	c.2541C>T	c.(2539-2541)TTC>TTT	p.F847F	SHROOM1_uc003kxy.1_Silent_p.F842F	NM_133456	NP_597713	Q2M3G4	SHRM1_HUMAN	shroom family member 1	847					actin filament bundle assembly|cell morphogenesis	cytoplasm|microtubule	actin filament binding			pancreas(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GGAGAAGAGGGAAGGGCGGCT	0.607													6	17					0	0	0.038147	0	0
KLHL3	26249	broad.mit.edu	37	5	137045464	137045464	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:137045464G>A	uc010jek.2	-	3	660	c.216C>T	c.(214-216)AGC>AGT	p.S72S	MYOT_uc011cye.1_Intron|KLHL3_uc010jem.1_Silent_p.S32S	NM_017415	NP_059111	Q9UH77	KLHL3_HUMAN	kelch-like 3	72	BTB.					cytoplasm|cytoskeleton	actin binding|structural molecule activity				0		all_hematologic(541;3.67e-07)|Breast(839;7.61e-05)|Prostate(281;0.000825)|Ovarian(839;0.0481)|all_lung(232;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	GBM - Glioblastoma multiforme(465;0.0223)		AGAAGTAGGGGCTGCAGGCTG	0.542													29	97					0	0	0.034045	0	0
BRD8	10902	broad.mit.edu	37	5	137500047	137500047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:137500047G>A	uc003lcf.1	-	13	1842	c.1787C>T	c.(1786-1788)CCT>CTT	p.P596L	BRD8_uc003lcc.1_RNA|BRD8_uc011cyl.1_Missense_Mutation_p.P375L|BRD8_uc003lcg.2_Missense_Mutation_p.P669L|BRD8_uc003lci.2_Missense_Mutation_p.P599L|BRD8_uc003lch.2_Missense_Mutation_p.P490L|BRD8_uc011cym.1_Missense_Mutation_p.P580L|BRD8_uc010jer.1_Missense_Mutation_p.P565L|BRD8_uc011cyn.1_Missense_Mutation_p.P555L	NM_139199	NP_631938	Q9H0E9	BRD8_HUMAN	bromodomain containing 8 isoform 2	596					cell surface receptor linked signaling pathway|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription from RNA polymerase II promoter	mitochondrion|NuA4 histone acetyltransferase complex	sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TGCCTCTAAAGGATCTTCAAT	0.423													30	50					0	0	0.064281	0	0
HARS2	23438	broad.mit.edu	37	5	140073847	140073847	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:140073847C>T	uc003lgx.2	+	4	597	c.381C>T	c.(379-381)TCC>TCT	p.S127S	HARS_uc003lgv.2_5'Flank|HARS_uc011czm.1_5'Flank|HARS_uc003lgw.2_5'Flank|HARS_uc011czn.1_5'Flank|HARS_uc010jfu.2_5'Flank|HARS_uc011czo.1_5'Flank|HARS_uc011czp.1_5'Flank|HARS_uc011czq.1_5'Flank|HARS2_uc010jfv.1_Silent_p.S57S|HARS2_uc011czr.1_Silent_p.S102S|HARS2_uc011czs.1_Intron|HARS2_uc011czt.1_Intron|HARS2_uc011czu.1_5'Flank	NM_012208	NP_036340	P49590	SYHM_HUMAN	histidyl-tRNA synthetase 2 precursor	127					histidyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|histidine-tRNA ligase activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCTGTTGTCCCTCCGCTATG	0.483													58	45					0	0	0.048971	0	0
PCDHA4	56144	broad.mit.edu	37	5	140187258	140187258	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:140187258C>T	uc003lhi.2	+	1	587	c.486C>T	c.(484-486)ATC>ATT	p.I162I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Silent_p.I162I|PCDHA4_uc011daa.1_Silent_p.I162I	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	162	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGCAGATATCGGGGAGAACG	0.527													19	78					0	0	0.038395	0	0
PCDHA13	56136	broad.mit.edu	37	5	140262086	140262086	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:140262086A>T	uc003lif.2	+	1	233	c.233A>T	c.(232-234)AAT>ATT	p.N78I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.N78I|PCDHA13_uc003lid.2_Missense_Mutation_p.N78I	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	78	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGGAGGTAAATCTGCAGAAT	0.627													48	163					0	0	0.048971	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348500	140348500	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:140348500T>A	uc003lii.2	+	1	2389	c.2149T>A	c.(2149-2151)TTT>ATT	p.F717I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.F717I	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	717	Helical; (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACAGTGTCTTTTATATTTCT	0.428													16	59					0	0	0.024245	0	0
PCDHB4	56131	broad.mit.edu	37	5	140502682	140502682	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:140502682C>T	uc003lip.1	+	1	1102	c.1102C>T	c.(1102-1104)CGA>TGA	p.R368*		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	368	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTCTATCTTCCGAATTCGAGA	0.403													53	132					0	0	0.048971	0	0
PCDHB6	56130	broad.mit.edu	37	5	140531413	140531413	+	Silent	SNP	C	T	T	rs144225778		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:140531413C>T	uc003lir.2	+	1	1575	c.1575C>T	c.(1573-1575)TTC>TTT	p.F525F	PCDHB6_uc011dah.1_Silent_p.F389F	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	525	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCAGTCTTTCGAGTTCCGCG	0.672													29	77					0	0	0.034045	0	0
PCDHB12	56124	broad.mit.edu	37	5	140589324	140589324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:140589324C>T	uc003liz.2	+	1	1034	c.845C>T	c.(844-846)TCC>TTC	p.S282F	PCDHB12_uc011dak.1_Intron	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	282	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TATACCTTTTCCCATGCCTCA	0.413													69	72					0	0	0.048971	0	0
PCDHB13	56123	broad.mit.edu	37	5	140595640	140595640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:140595640G>A	uc003lja.1	+	1	2132	c.1945G>A	c.(1945-1947)GAG>AAG	p.E649K		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	649	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGACAATGGCGAGCCTCCGCG	0.726													18	42					0	0	0.076483	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720598	140720598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:140720598C>T	uc003ljk.1	+	1	2245	c.2060C>T	c.(2059-2061)TCG>TTG	p.S687L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.S687L	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	687	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCAACGATTCGGACCTCACT	0.682													42	113					0	0	0.048971	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140735431	140735431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:140735431C>T	uc003ljq.1	+	1	664	c.664C>T	c.(664-666)CGC>TGC	p.R222C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.R222C	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	222	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGACCCGGTTCGCTCTGGCAC	0.547													5	16					0	0	0.014758	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140768288	140768288	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:140768288C>T	uc003lkc.1	+	1	837	c.837C>T	c.(835-837)TTC>TTT	p.F279F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Silent_p.F279F	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	279	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGATTACTTTCTCTTTCAGTG	0.453													19	65					0	0	0.043863	0	0
PPP2R2B	5521	broad.mit.edu	37	5	146030179	146030179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:146030179C>T	uc003loe.2	-	5	1081	c.556G>A	c.(556-558)GAA>AAA	p.E186K	PPP2R2B_uc010jgm.2_Missense_Mutation_p.E175K|PPP2R2B_uc003log.3_Missense_Mutation_p.E186K|PPP2R2B_uc003lof.3_Missense_Mutation_p.E186K|PPP2R2B_uc003loi.3_Missense_Mutation_p.E189K|PPP2R2B_uc003loh.3_Missense_Mutation_p.E186K|PPP2R2B_uc003loj.3_Missense_Mutation_p.E166K|PPP2R2B_uc003lok.3_Missense_Mutation_p.E175K|PPP2R2B_uc011dbu.1_Missense_Mutation_p.E192K|PPP2R2B_uc011dbv.1_Missense_Mutation_p.E244K	NM_004576	NP_004567	Q00005	2ABB_HUMAN	beta isoform of regulatory subunit B55, protein	186	WD 3.				apoptosis|signal transduction	cytoskeleton|mitochondrial outer membrane|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)|prostate(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATGTAGGTTTCATAGTCGCTG	0.438													8	43					0	0	0.069234	0	0
GRIA1	2890	broad.mit.edu	37	5	153056646	153056646	+	Silent	SNP	G	A	A	rs146697277		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:153056646G>A	uc003lva.3	+	7	1319	c.954G>A	c.(952-954)GGG>GGA	p.G318G	GRIA1_uc003luy.3_Silent_p.G318G|GRIA1_uc003luz.3_Silent_p.G223G|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.G238G|GRIA1_uc011dcx.1_Silent_p.G249G|GRIA1_uc011dcy.1_Silent_p.G328G|GRIA1_uc011dcz.1_Silent_p.G328G|GRIA1_uc010jia.1_Silent_p.G298G	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	318	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CTCGCCGGGGGAATGCTGGGG	0.572													23	20					0	0	0.091800	0	0
FAM71B	153745	broad.mit.edu	37	5	156592849	156592849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:156592849G>A	uc003lwn.2	-	1	431	c.331C>T	c.(331-333)CGC>TGC	p.R111C		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	111						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ACGGGCCTGCGACCTCTCCCC	0.542													337	298					0	0	0.048971	0	0
SLIT3	6586	broad.mit.edu	37	5	168620509	168620509	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:168620509G>A	uc003mab.2	-	4	807	c.387C>T	c.(385-387)TTC>TTT	p.F129F	SLIT3_uc010jjg.2_Silent_p.F129F|SLIT3_uc010jji.2_Silent_p.F129F	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	129	LRR 3.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCGTGCTCTGGAAAAGCAATT	0.493													51	55					0	0	0.048971	0	0
BOD1	91272	broad.mit.edu	37	5	173036301	173036301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:173036301C>T	uc003mcq.2	-	3	726	c.499G>A	c.(499-501)GCA>ACA	p.A167T	BOD1_uc003mcr.2_Intron	NM_138369	NP_612378	Q96IK1	BOD1_HUMAN	biorientation of chromosomes in cell division 1	167					cell division|mitosis	condensed chromosome kinetochore|microtubule organizing center				ovary(2)	2						GGAGGGGGTGCTGGCACAGCT	0.527													51	94					0	0	0.048971	0	0
C5orf25	375484	broad.mit.edu	37	5	175763763	175763763	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:175763763T>A	uc003mds.3	+	10	2562	c.2155T>A	c.(2155-2157)TGC>AGC	p.C719S	C5orf25_uc003mdt.3_Missense_Mutation_p.C304S|C5orf25_uc003mdr.3_RNA|C5orf25_uc003mdv.2_Missense_Mutation_p.C180S			Q8NDZ2	CE025_HUMAN	RecName: Full=Uncharacterized protein C5orf25;	719											0	all_cancers(89;0.00381)|Renal(175;0.000269)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.119)		CCTTCTGCGCTGCAAAGTGTT	0.473													44	126					0	0	0.048971	0	0
UIMC1	51720	broad.mit.edu	37	5	176332391	176332391	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:176332391G>A	uc011dfp.1	-	15	2219	c.2052C>T	c.(2050-2052)TCC>TCT	p.S684S	UIMC1_uc003mfc.1_Silent_p.S561S|UIMC1_uc003mfd.1_Silent_p.S314S	NM_016290	NP_057374	Q96RL1	UIMC1_HUMAN	ubiquitin interaction motif containing 1	684					double-strand break repair|G2/M transition DNA damage checkpoint|histone H2A K63-linked deubiquitination|negative regulation of transcription, DNA-dependent|positive regulation of DNA repair|response to ionizing radiation|transcription, DNA-dependent	BRCA1-A complex	histone binding|K63-linked polyubiquitin binding			ovary(3)|skin(1)	4	all_cancers(89;7.96e-05)|Renal(175;0.000269)|Lung NSC(126;0.00476)|all_lung(126;0.00806)	Medulloblastoma(196;0.0145)|all_neural(177;0.0325)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTTCTGAAATGGAAACAAAAG	0.483													41	49					0	0	0.086207	0	0
DSP	1832	broad.mit.edu	37	6	7582885	7582885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:7582885G>A	uc003mxp.1	+	24	5669	c.5390G>A	c.(5389-5391)AGG>AAG	p.R1797K	DSP_uc003mxq.1_Missense_Mutation_p.R1198K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1797	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GCATCTAATAGGATTCAGGAA	0.373													41	79					0	0	0.080422	0	0
C6orf105	84830	broad.mit.edu	37	6	11778949	11778949	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:11778949C>T	uc003nab.2	-	1	332	c.44G>A	c.(43-45)AGC>AAC	p.S15N	C6orf105_uc011dip.1_Missense_Mutation_p.S15N	NM_032744	NP_116133	Q96IZ2	CF105_HUMAN	hypothetical protein LOC84830 isoform 2	15	Helical; (Potential).					integral to membrane					0	Ovarian(93;0.0848)|Breast(50;0.0871)	all_hematologic(90;0.135)	Epithelial(50;0.146)|BRCA - Breast invasive adenocarcinoma(129;0.193)			AGTATACCAGCTCAGAACAAG	0.458													44	76					0	0	0.098360	0	0
HIVEP1	3096	broad.mit.edu	37	6	12124989	12124989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:12124989C>T	uc003nac.2	+	4	5140	c.4961C>T	c.(4960-4962)TCC>TTC	p.S1654F	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	1654					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				ACACTCACATCCCTGCCACAA	0.478													42	108					0	0	0.048971	0	0
CCDC90A	63933	broad.mit.edu	37	6	13802488	13802488	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:13802488G>A	uc003nbd.2	-	3	754	c.626C>T	c.(625-627)ACC>ATC	p.T209I	CCDC90A_uc010jpf.2_RNA	NM_001031713	NP_001026883	Q96AQ8	CC90A_HUMAN	coiled-coil domain containing 90A precursor	209						integral to membrane|mitochondrion					0	Breast(50;0.0027)|Ovarian(93;0.0964)	all_hematologic(90;0.117)				CTGCATCTTGGTGACCATATC	0.398													27	71					0	0	0.041601	0	0
SLC17A3	10786	broad.mit.edu	37	6	25845740	25845740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:25845740G>A	uc003nfi.3	-	11	1243	c.1133C>T	c.(1132-1134)CCT>CTT	p.P378L	SLC17A3_uc003nfk.3_Missense_Mutation_p.P456L	NM_006632	NP_006623	O00476	NPT4_HUMAN	solute carrier family 17 (sodium phosphate),	378					glucose-6-phosphate transport|urate metabolic process	apical plasma membrane|brush border membrane|endoplasmic reticulum membrane|integral to plasma membrane|perinuclear region of cytoplasm	drug transmembrane transporter activity|efflux transmembrane transporter activity|organic anion transmembrane transporter activity|sodium:phosphate symporter activity|toxin transporter activity|urate transmembrane transporter activity|voltage-gated anion channel activity				0						CCCAAACTCAGGGTCCTGGAG	0.403													29	39					0	0	0.045705	0	0
ZSCAN12	9753	broad.mit.edu	37	6	28365888	28365888	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:28365888G>T	uc011dlh.1	-	2	474	c.295C>A	c.(295-297)CCT>ACT	p.P99T	ZSCAN12_uc010jre.2_Missense_Mutation_p.P99T	NM_001163391	NP_001156863			zinc finger and SCAN domain containing 12												0						AGCTCCTCAGGTAGGATGGTC	0.577													7	41					1.06961e-07	1.09435e-07	0.038147	1	0
OR2J3	442186	broad.mit.edu	37	6	29080495	29080495	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:29080495C>T	uc011dll.1	+	1	828	c.828C>T	c.(826-828)TTC>TTT	p.F276F		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	276	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAGGCAAGTTCATTGCCCTCT	0.443													51	55					0	0	0.048971	0	0
OR10C1	442194	broad.mit.edu	37	6	29407862	29407862	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:29407862G>A	uc011dlp.1	+	1	70	c.70G>A	c.(70-72)GGC>AGC	p.G24S	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CGACCTCCAGGGCTTGCTCTT	0.542													99	20					0	0	0.048971	0	0
MUC21	394263	broad.mit.edu	37	6	30955194	30955194	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:30955194C>T	uc003nsh.2	+	2	1493	c.1242C>T	c.(1240-1242)TCC>TCT	p.S414S	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	414	26.|Ser-rich.|28 X 15 AA approximate tandem repeats.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|skin(1)	2						GCACAGTGTCCAGTGGGGCCA	0.627													90	133					0	0	0.048971	0	0
BAT4	7918	broad.mit.edu	37	6	31631878	31631878	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:31631878C>T	uc003nvn.2	-	2	1023	c.378G>A	c.(376-378)CCG>CCA	p.P126P	BAT4_uc003nvo.3_Silent_p.P126P|BAT4_uc003nvp.3_Silent_p.P126P|BAT4_uc003nvq.2_Silent_p.P126P|CSNK2B_uc010jsz.1_5'Flank|CSNK2B_uc010jta.1_5'Flank|CSNK2B_uc003nvr.1_5'Flank|CSNK2B_uc003nvs.1_5'Flank	NM_033177	NP_149417	O95872	GPAN1_HUMAN	HLA-B associated transcript 4	126	ANK 1.					intracellular	nucleic acid binding				0						CTGCCTCATGCGGTTCCAGCA	0.617													8	719					0	0	0.047766	0	0
MLN	4295	broad.mit.edu	37	6	33766901	33766901	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:33766901T>A	uc003off.1	-	3	286	c.215A>T	c.(214-216)GAA>GTA	p.E72V	MLN_uc003ofg.1_Missense_Mutation_p.E72V|MLN_uc011drn.1_Missense_Mutation_p.E72V	NM_002418	NP_002409	P12872	MOTI_HUMAN	motilin isoform 1 preproprotein	72					cell-cell signaling|G-protein coupled receptor protein signaling pathway	extracellular region|soluble fraction	hormone activity				0						TTCGTTTTCTTCTTCCCTGAT	0.532													65	71					0	0	0.048971	0	0
BRPF3	27154	broad.mit.edu	37	6	36196801	36196801	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:36196801C>T	uc003olv.3	+	12	3626	c.3402C>T	c.(3400-3402)TTC>TTT	p.F1134F	BRPF3_uc010jwb.2_Silent_p.F864F|BRPF3_uc011dtj.1_RNA|BRPF3_uc010jwc.2_Intron|BRPF3_uc011dtk.1_Silent_p.F800F|BRPF3_uc010jwd.2_Silent_p.F36F	NM_015695	NP_056510	Q9ULD4	BRPF3_HUMAN	bromodomain and PHD finger containing, 3	1134	PWWP.				histone H3 acetylation|platelet activation|platelet degranulation	cytosol|extracellular region|MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						AGAAGCTCTTCCTTGTCCTCT	0.622													17	32					0	0	0.049695	0	0
CPNE5	57699	broad.mit.edu	37	6	36767803	36767803	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:36767803G>A	uc003omr.1	-	4	295	c.228C>T	c.(226-228)TTC>TTT	p.F76F	CPNE5_uc003oms.1_Silent_p.F38F	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	76	C2 1.									skin(1)	1						ACTTGCGCACGAAGTCAGGAT	0.552													17	31					0	0	0.038395	0	0
DNAH8	1769	broad.mit.edu	37	6	38890939	38890939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:38890939G>A	uc003ooe.1	+	70	10717	c.10117G>A	c.(10117-10119)GAA>AAA	p.E3373K	uc003oof.1_RNA	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GCAAAGTAAAGAATTCAAAGC	0.438													17	30					0	0	0.043863	0	0
GLP1R	2740	broad.mit.edu	37	6	39024187	39024187	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:39024187C>T	uc003ooj.3	+	2	153	c.93C>T	c.(91-93)TCC>TCT	p.S31S	GLP1R_uc003ooh.2_RNA|GLP1R_uc003ooi.2_RNA	NM_002062	NP_002053	P43220	GLP1R_HUMAN	glucagon-like peptide 1 receptor precursor	31	Extracellular (Potential).				activation of adenylate cyclase activity|cAMP-mediated signaling|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	glucagon receptor activity|peptide receptor activity, G-protein coupled			lung(3)|breast(1)|pancreas(1)	5					Exenatide(DB01276)|Glucagon recombinant(DB00040)	CCACTGTGTCCCTCTGGGAGA	0.617													21	44					0	0	0.076483	0	0
KCNK5	8645	broad.mit.edu	37	6	39163723	39163723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:39163723C>T	uc003oon.2	-	2	591	c.227G>A	c.(226-228)GGG>GAG	p.G76E		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	76					excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						GGTCTGGTTCCCTGTGATGGC	0.468													28	49					0	0	0.030593	0	0
TREML2	79865	broad.mit.edu	37	6	41165891	41165891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:41165891C>T	uc010jxm.1	-	2	511	c.332G>A	c.(331-333)GGG>GAG	p.G111E		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	111	Ig-like V-type.|Extracellular (Potential).				T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					GTACAGGATCCCAGAGGTGTT	0.622													19	32					0	0	0.038395	0	0
PTCRA	171558	broad.mit.edu	37	6	42892001	42892001	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:42892001G>A	uc003osx.2	+	3	495	c.414G>A	c.(412-414)GAG>GAA	p.E138E	PTCRA_uc010jxx.1_Missense_Mutation_p.S99N|PTCRA_uc010jxy.2_Silent_p.E113E|PTCRA_uc010jxz.2_Silent_p.E31E	NM_138296	NP_612153	Q6ISU1	PTCRA_HUMAN	pre T-cell antigen receptor alpha precursor	138	Extracellular (Potential).					integral to membrane	receptor activity			ovary(2)	2	Colorectal(47;0.196)		all cancers(41;0.000731)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|OV - Ovarian serous cystadenocarcinoma(102;0.0218)|Kidney(15;0.0388)			GCCCCCAGGAGCCTCTCAGGG	0.642													24	63					0	0	0.083992	0	0
KLHDC3	116138	broad.mit.edu	37	6	42985300	42985300	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:42985300C>T	uc003otl.2	+	3	367	c.198C>T	c.(196-198)ATC>ATT	p.I66I	KLHDC3_uc003otm.2_RNA|KLHDC3_uc010jyf.2_Silent_p.I66I|KLHDC3_uc003otn.2_5'UTR|KLHDC3_uc003oto.2_Intron	NM_057161	NP_476502	Q9BQ90	KLDC3_HUMAN	kelch domain containing 3	66	Kelch 1.				reciprocal meiotic recombination	cytoplasm|nuclear chromatin	chromatin binding|protein binding			upper_aerodigestive_tract(1)	1			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			AGTCTGCCATCCGTGGGCAAG	0.607													76	11					0	0	0.048971	0	0
C6orf108	10591	broad.mit.edu	37	6	43193590	43193590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:43193590C>T	uc003ouo.2	-	4	423	c.406G>A	c.(406-408)GAT>AAT	p.D136N	C6orf108_uc003oup.2_3'UTR	NM_006443	NP_006434	O43598	RCL_HUMAN	putative c-Myc-responsive isoform 1	136					cell proliferation|deoxyribonucleoside monophosphate catabolic process|positive regulation of cell growth	cytoplasm|nucleus	deoxyribonucleoside 5'-monophosphate N-glycosidase activity|nucleoside deoxyribosyltransferase activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0123)|OV - Ovarian serous cystadenocarcinoma(102;0.0531)			CGAGAGCCATCTGCTGCTCCC	0.617													26	50					0	0	0.030593	0	0
CRIP3	401262	broad.mit.edu	37	6	43274219	43274219	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:43274219G>A	uc010jyn.1	-	5	365	c.365C>T	c.(364-366)TCG>TTG	p.S122L	CRIP3_uc003ouu.1_Missense_Mutation_p.S122L	NM_206922	NP_996805	Q6Q6R5	CRIP3_HUMAN	cysteine-rich protein 3	122	LIM zinc-binding 2.					cytoplasm	zinc ion binding			skin(1)	1			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			AGGGCACAGCGAGGTCTCCCC	0.582													26	55					0	0	0.045705	0	0
PLA2G7	7941	broad.mit.edu	37	6	46677110	46677110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:46677110C>T	uc010jzf.2	-	9	1092	c.823G>A	c.(823-825)GGT>AGT	p.G275S	PLA2G7_uc010jzg.1_Missense_Mutation_p.G275S	NM_005084	NP_005075	Q13093	PAFA_HUMAN	phospholipase A2, group VII	275					inflammatory response|lipid catabolic process	extracellular space	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding				0			Lung(136;0.192)			GTTGCTCCACCAAAAGAATGT	0.303													29	81					0	0	0.059317	0	0
HCRTR2	3062	broad.mit.edu	37	6	55142266	55142266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:55142266C>T	uc003pcl.2	+	5	1166	c.851C>T	c.(850-852)TCC>TTC	p.S284F	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	284	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CCAACGAAGTCCCGGATGAGC	0.502													18	8					0	0	0.038395	0	0
COL21A1	81578	broad.mit.edu	37	6	56029286	56029286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:56029286C>T	uc003pcs.2	-	9	1538	c.1306G>A	c.(1306-1308)GAT>AAT	p.D436N	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.D436N|COL21A1_uc003pcu.1_Missense_Mutation_p.D433N	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	436					cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			GAACCTACATCACTGGGACCA	0.403													3	1					0	0	0.009096	0	0
BAI3	577	broad.mit.edu	37	6	70070788	70070788	+	Missense_Mutation	SNP	G	A	A	rs144968426		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:70070788G>A	uc003pev.3	+	29	4071	c.3623G>A	c.(3622-3624)CGA>CAA	p.R1208Q	BAI3_uc010kak.2_Missense_Mutation_p.R1208Q|BAI3_uc011dxx.1_Missense_Mutation_p.R414Q	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1208	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GGTCCTTGCCGAGCAGCCACA	0.358													19	18					0	0	0.049695	0	0
COL9A1	1297	broad.mit.edu	37	6	70926736	70926736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:70926736C>T	uc003pfg.3	-	38	2789	c.2630G>A	c.(2629-2631)CGA>CAA	p.R877Q	COL9A1_uc003pfe.3_Missense_Mutation_p.R426Q|COL9A1_uc003pff.3_Missense_Mutation_p.R634Q	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	877	Triple-helical region (COL1).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						TGGGGGGCCTCGCTCACCGTC	0.607													33	20					0	0	0.059317	0	0
COL9A1	1297	broad.mit.edu	37	6	70944589	70944589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:70944589G>A	uc003pfg.3	-	34	2326	c.2167C>T	c.(2167-2169)CCT>TCT	p.P723S	COL9A1_uc003pfe.3_Missense_Mutation_p.P272S|COL9A1_uc003pff.3_Missense_Mutation_p.P480S	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	723	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						TCCACTCCAGGAAGCCCCCGA	0.612													27	10					0	0	0.034045	0	0
SNAP91	9892	broad.mit.edu	37	6	84292025	84292025	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:84292025G>A	uc011dze.1	-	22	2382	c.2065C>T	c.(2065-2067)CAG>TAG	p.Q689*	SNAP91_uc011dzd.1_Nonsense_Mutation_p.Q192*|SNAP91_uc003pkb.2_Nonsense_Mutation_p.Q598*|SNAP91_uc003pkc.2_Nonsense_Mutation_p.Q659*|SNAP91_uc003pkd.2_Nonsense_Mutation_p.Q382*|SNAP91_uc003pka.2_Nonsense_Mutation_p.Q687*	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	689					clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		AGGTTATTCTGAGCTGGAGTC	0.463													26	13					0	0	0.083992	0	0
SNAP91	9892	broad.mit.edu	37	6	84368726	84368726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:84368726C>T	uc011dze.1	-	6	855	c.538G>A	c.(538-540)GAA>AAA	p.E180K	SNAP91_uc003pkb.2_Missense_Mutation_p.E145K|SNAP91_uc003pkc.2_Missense_Mutation_p.E180K|SNAP91_uc003pkd.2_Missense_Mutation_p.E180K|SNAP91_uc003pka.2_Missense_Mutation_p.E180K|SNAP91_uc011dzf.1_Missense_Mutation_p.E61K	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	180					clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		ACATCAAATTCAAGCAGTGCA	0.318													13	1					0	0	0.105934	0	0
EPHA7	2045	broad.mit.edu	37	6	93964398	93964398	+	Silent	SNP	T	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:93964398T>A	uc003poe.2	-	14	2740	c.2499A>T	c.(2497-2499)GGA>GGT	p.G833G	EPHA7_uc003pof.2_Silent_p.G828G|EPHA7_uc011eac.1_Silent_p.G829G	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	833	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		AAGGTCTTTCTCCATAAGACA	0.398													30	9					0	0	0.050027	0	0
ATG5	9474	broad.mit.edu	37	6	106696051	106696051	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:106696051G>A	uc003prf.2	-	6	900	c.547C>T	c.(547-549)CGT>TGT	p.R183C	ATG5_uc010kdb.2_Silent_p.F181F|ATG5_uc003prg.2_Missense_Mutation_p.R105C|ATG5_uc010kdc.2_Silent_p.F59F	NM_004849	NP_004840	Q9H1Y0	ATG5_HUMAN	APG5 autophagy 5-like	183					apoptosis|autophagic vacuole assembly|negative regulation of type I interferon production|post-translational protein modification	autophagic vacuole|pre-autophagosomal structure membrane	protein binding			large_intestine(1)	1	Breast(9;0.0296)	all_cancers(87;0.000301)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.0612)|Lung NSC(302;0.216)	BRCA - Breast invasive adenocarcinoma(8;0.00802)	OV - Ovarian serous cystadenocarcinoma(136;0.128)|Epithelial(106;0.159)|all cancers(137;0.18)		GGGATATAACGAAATCCATTT	0.313													24	18					0	0	0.030593	0	0
REV3L	5980	broad.mit.edu	37	6	111694991	111694991	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:111694991C>T	uc003puy.3	-	13	4890	c.4567G>A	c.(4567-4569)GGA>AGA	p.G1523R	REV3L_uc003pux.3_Missense_Mutation_p.G1445R|REV3L_uc003puz.3_Missense_Mutation_p.G1445R	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	1523					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		CCAGACTGTCCTTCACCAAAT	0.373								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					92	33					0	0	0.048971	0	0
FAM26F	441168	broad.mit.edu	37	6	116784550	116784550	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:116784550G>A	uc003pwv.2	+	3	725	c.630G>A	c.(628-630)TGG>TGA	p.W210*		NM_001010919	NP_001010919	Q5R3K3	FA26F_HUMAN	hypothetical protein LOC441168	210						integral to membrane					0				GBM - Glioblastoma multiforme(226;0.0402)|all cancers(137;0.0627)|OV - Ovarian serous cystadenocarcinoma(136;0.0655)|Epithelial(106;0.231)		TGAAATTCTGGAAAATCTATT	0.393													45	32					0	0	0.039052	0	0
FAM184A	79632	broad.mit.edu	37	6	119297154	119297154	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:119297154C>T	uc003pyj.2	-	12	2859	c.2511G>A	c.(2509-2511)CGG>CGA	p.R837R	FAM184A_uc003pyk.3_Silent_p.R717R|FAM184A_uc003pyl.3_Silent_p.R717R|FAM184A_uc003pyi.2_RNA	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	837										ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						GATGATTATGCCGTAACAAAT	0.383													18	13					0	0	0.043863	0	0
ENPP3	5169	broad.mit.edu	37	6	131992443	131992443	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:131992443C>T	uc003qcu.3	+	8	965	c.618C>T	c.(616-618)TTC>TTT	p.F206F	ENPP3_uc010kfn.1_RNA|ENPP3_uc011ecc.1_Silent_p.F172F|ENPP3_uc010kfo.1_RNA|ENPP3_uc010kfp.1_RNA|ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Silent_p.F206F	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	206	Extracellular (Potential).|Phosphodiesterase.				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		CCAAAACCTTCCCAAATCATT	0.408													25	23					0	0	0.108266	0	0
EYA4	2070	broad.mit.edu	37	6	133827283	133827283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:133827283G>A	uc003qec.3	+	14	1689	c.1231G>A	c.(1231-1233)GAA>AAA	p.E411K	EYA4_uc011ecq.1_Missense_Mutation_p.E357K|EYA4_uc011ecr.1_Missense_Mutation_p.E363K|EYA4_uc003qed.3_Missense_Mutation_p.E411K|EYA4_uc003qee.3_Missense_Mutation_p.E388K|EYA4_uc011ecs.1_Missense_Mutation_p.E417K|uc003qef.1_RNA|uc003qeg.1_RNA	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	411					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		CCGCATGGAAGAAATGATTTT	0.338													29	20					0	0	0.037714	0	0
BCLAF1	9774	broad.mit.edu	37	6	136589407	136589407	+	Nonsense_Mutation	SNP	G	A	A	rs149673256		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:136589407G>A	uc003qgx.1	-	10	2543	c.2290C>T	c.(2290-2292)CGA>TGA	p.R764*	BCLAF1_uc011edb.1_Nonsense_Mutation_p.R92*|BCLAF1_uc003qgw.1_Nonsense_Mutation_p.R591*|BCLAF1_uc003qgy.1_Nonsense_Mutation_p.R762*|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Nonsense_Mutation_p.R762*	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	764					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TTTTCTTCTCGAGAACTGGGA	0.383													4	70					0	0	0.014758	0	0
TXLNB	167838	broad.mit.edu	37	6	139564218	139564218	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:139564218C>T	uc011eds.1	-	10	1665	c.1500G>A	c.(1498-1500)GTG>GTA	p.V500V		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	500						cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		CCAGATTTTTCACGGCGGTTT	0.488													70	49					0	0	0.048971	0	0
LPAL2	80350	broad.mit.edu	37	6	160913983	160913983	+	RNA	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:160913983G>A	uc003qtj.2	-	3		c.338C>T			LPAL2_uc011efy.1_RNA	NR_028093				Homo sapiens cDNA FLJ43922 fis, clone TESTI4012406.												0		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.214)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)		GCAGTAGTTCGAGATCAAGCC	0.493													37	17					0	0	0.086207	0	0
C6orf118	168090	broad.mit.edu	37	6	165715499	165715499	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:165715499C>T	uc003qum.3	-	2	348	c.312G>A	c.(310-312)AGG>AGA	p.R104R	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	104											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		CCTCCTTCATCCTCGCCACCT	0.682													66	41					0	0	0.048971	0	0
MICALL2	79778	broad.mit.edu	37	7	1478590	1478590	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:1478590G>A	uc003skj.3	-	10	2155	c.2008C>T	c.(2008-2010)CCT>TCT	p.P670S	MICALL2_uc003skh.3_5'UTR|MICALL2_uc003ski.3_Missense_Mutation_p.P157S	NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	670						cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		AGGCTGGCAGGGACGGCCAGT	0.687													19	37					0	0	0.083992	0	0
SLC29A4	222962	broad.mit.edu	37	7	5334561	5334561	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:5334561G>A	uc003sod.2	+	6	776	c.615G>A	c.(613-615)GGG>GGA	p.G205G	SLC29A4_uc011jwg.1_RNA|SLC29A4_uc003soc.2_Silent_p.G205G|SLC29A4_uc003soe.2_Silent_p.G191G	NM_153247	NP_694979	Q7RTT9	S29A4_HUMAN	solute carrier family 29 (nucleoside	205	Extracellular (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|integral to membrane	nucleoside transmembrane transporter activity			liver(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0903)|OV - Ovarian serous cystadenocarcinoma(56;2.65e-15)		TGATGACCGGGGAGAGTGAGT	0.612													35	151					0	0	0.074837	0	0
USP42	84132	broad.mit.edu	37	7	6189856	6189856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:6189856G>A	uc011jwo.1	+	13	2152	c.2029G>A	c.(2029-2031)GAT>AAT	p.D677N	USP42_uc010kth.1_Missense_Mutation_p.D610N|USP42_uc011jwp.1_Missense_Mutation_p.D677N|USP42_uc011jwq.1_Missense_Mutation_p.D484N|USP42_uc011jwr.1_Missense_Mutation_p.D522N	NM_032172	NP_115548	Q9H9J4	UBP42_HUMAN	ubiquitin specific peptidase 42	677					cell differentiation|protein deubiquitination|spermatogenesis|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(2)|ovary(1)|pancreas(1)|breast(1)	5		Ovarian(82;0.0423)		UCEC - Uterine corpus endometrioid carcinoma (126;0.108)|OV - Ovarian serous cystadenocarcinoma(56;5.77e-14)		CCTAGCGCCTGATGGTGCCAG	0.562													15	26					0	0	0.038395	0	0
THSD7A	221981	broad.mit.edu	37	7	11676191	11676191	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:11676191G>A	uc003ssf.3	-	2	840	c.588C>T	c.(586-588)ATC>ATT	p.I196I		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	196	Extracellular (Potential).|TSP type-1 2.					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		ATTCAGACACGATGCAATCTT	0.577										HNSCC(18;0.044)			24	46					0	0	0.091800	0	0
RAPGEF5	9771	broad.mit.edu	37	7	22197493	22197493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:22197493C>T	uc003svg.2	-	15	1391	c.1078G>A	c.(1078-1080)GAA>AAA	p.E360K	RAPGEF5_uc011jyl.1_Missense_Mutation_p.E41K	NM_012294	NP_036426	Q92565	RPGF5_HUMAN	Rap guanine nucleotide exchange factor (GEF) 5	210					nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						GGTGAATATTCATCTACAGTG	0.403													27	34					0	0	0.037714	0	0
MPP6	51678	broad.mit.edu	37	7	24663358	24663358	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:24663358C>T	uc003swx.2	+	3	371	c.72C>T	c.(70-72)TTC>TTT	p.F24F	MPP6_uc003swy.2_Silent_p.F24F	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	24	L27 1.				protein complex assembly		protein binding				0						ACCTAATTTTCCTCAAGGGAA	0.343													20	51					0	0	0.069288	0	0
DPY19L1	23333	broad.mit.edu	37	7	35009087	35009087	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:35009087G>A	uc003tem.3	-	9	898	c.753C>T	c.(751-753)TTC>TTT	p.F251F		NM_015283	NP_056098	Q2PZI1	D19L1_HUMAN	dpy-19-like 1	251	Helical; (Potential).					integral to membrane					0						AAGGAAGCATGAAAAATACAT	0.343													12	70					0	0	0.020292	0	0
GPR141	353345	broad.mit.edu	37	7	37780595	37780595	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:37780595G>A	uc003tfm.1	+	1	600	c.600G>A	c.(598-600)CAG>CAA	p.Q200Q	uc003tfl.2_Intron	NM_181791	NP_861456	Q7Z602	GP141_HUMAN	G protein-coupled receptor 141	200	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3						TGGTCTTCCAGGTCTTCATCA	0.393													59	122					0	0	0.048971	0	0
GLI3	2737	broad.mit.edu	37	7	42065834	42065834	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:42065834G>A	uc011kbh.1	-	8	1297	c.1206C>T	c.(1204-1206)CCC>CCT	p.P402P	GLI3_uc011kbg.1_Silent_p.P343P	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	402					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						TGACCTGGACGGGGTTCAGAA	0.627									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				7	27					0	0	0.038147	0	0
OGDH	4967	broad.mit.edu	37	7	44746876	44746876	+	Silent	SNP	A	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:44746876A>T	uc003tln.2	+	21	2794	c.2685A>T	c.(2683-2685)CCA>CCT	p.P895P	OGDH_uc011kbx.1_Silent_p.P891P|OGDH_uc011kby.1_Silent_p.P745P|OGDH_uc003tlp.2_Silent_p.P906P|OGDH_uc011kbz.1_Silent_p.P690P	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	895					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	CTCAGAACCCAGAAAATGTCA	0.552													33	72					0	0	0.064281	0	0
ADCY1	107	broad.mit.edu	37	7	45717819	45717819	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:45717819C>T	uc003tne.3	+	10	1873	c.1855C>T	c.(1855-1857)CTG>TTG	p.L619L		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	619	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	CACCCTCATCCTGGCTGCCTT	0.507													77	149					0	0	0.048971	0	0
ABCA13	154664	broad.mit.edu	37	7	48547507	48547507	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:48547507C>T	uc003toq.2	+	50	13411	c.13386C>T	c.(13384-13386)ATC>ATT	p.I4462I	ABCA13_uc010kys.1_Silent_p.I1537I|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Silent_p.I192I	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4462	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CCCTCTGCATCGTGCTGGGAT	0.567													7	21					0	0	0.038147	0	0
ZNF735	730291	broad.mit.edu	37	7	63680443	63680443	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:63680443G>A	uc011kdn.1	+	4	1014	c.1014G>A	c.(1012-1014)TCG>TCA	p.S338S		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	338	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACTGCTCCTCGACTCTTAAGA	0.423													9	11					0	0	0.058154	0	0
VKORC1L1	154807	broad.mit.edu	37	7	65419208	65419208	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:65419208T>C	uc003tul.2	+	3	554	c.452T>C	c.(451-453)CTT>CCT	p.L151P	VKORC1L1_uc011kds.1_Silent_p.P114P|VKORC1L1_uc003tum.1_5'Flank	NM_173517	NP_775788	Q8N0U8	VKORL_HUMAN	vitamin K epoxide reductase complex, subunit	151	Helical; (Potential).					integral to membrane					0		Lung NSC(55;0.197)			Menadione(DB00170)|Warfarin(DB00682)	CTGAACTTCCTTCTTCTCATT	0.517													35	49					0	0	0.069456	0	0
ASL	435	broad.mit.edu	37	7	65551585	65551585	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:65551585C>T	uc003tuo.2	+	7	571	c.460C>T	c.(460-462)CTC>TTC	p.L154F	ASL_uc011kdu.1_Missense_Mutation_p.L154F|ASL_uc011kdv.1_Missense_Mutation_p.L154F|ASL_uc003tup.2_Missense_Mutation_p.L154F|ASL_uc003tur.2_Missense_Mutation_p.L154F|ASL_uc003tuq.2_Missense_Mutation_p.L154F	NM_000048	NP_000039	P04424	ARLY_HUMAN	argininosuccinate lyase isoform 1	154					arginine biosynthetic process via ornithine|arginine catabolic process|urea cycle	cytosol	argininosuccinate lyase activity			breast(2)	2					L-Arginine(DB00125)	ACGTGATGTTCTCTTCCCGGG	0.637													21	37					0	0	0.083992	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72338200	72338200	+	RNA	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:72338200G>A	uc010lal.1	-	1		c.1456C>T				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						CCTCCCCCCAGCCATGCGTTG	0.463													63	115					0	0	0.048971	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72338349	72338349	+	RNA	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:72338349C>T	uc010lal.1	-	1		c.1307G>A				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						GACAGGGTTTCCATGGGAGCA	0.552													61	113					0	0	0.048971	0	0
BAZ1B	9031	broad.mit.edu	37	7	72922733	72922733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:72922733G>A	uc003tyc.2	-	3	638	c.293C>T	c.(292-294)TCC>TTC	p.S98F		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	98	WAC.|Mediates the tyrosine-protein kinase activity.				ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				CTTCTCTAAGGAGGCTGTGTT	0.408													27	37					0	0	0.030593	0	0
CCDC146	57639	broad.mit.edu	37	7	76909908	76909908	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:76909908C>T	uc003uga.2	+	14	1984	c.1857C>T	c.(1855-1857)ATC>ATT	p.I619I	CCDC146_uc010ldp.2_Silent_p.I333I|CCDC146_uc003ugc.2_5'Flank	NM_020879	NP_065930	Q8IYE0	CC146_HUMAN	coiled-coil domain containing 146	619	Potential.									ovary(1)|central_nervous_system(1)	2		all_cancers(73;0.128)|all_lung(88;0.0986)|all_epithelial(88;0.163)|Myeloproliferative disorder(862;0.205)				TCACAATGATCGAAGAGGAGA	0.418													16	29					0	0	0.033300	0	0
PCLO	27445	broad.mit.edu	37	7	82582113	82582113	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:82582113C>T	uc003uhx.2	-	5	8445	c.8156G>A	c.(8155-8157)GGA>GAA	p.G2719E	PCLO_uc003uhv.2_Missense_Mutation_p.G2719E|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2650					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTGCAATTTTCCATCTTCTTT	0.373													14	29					0	0	0.020292	0	0
PCLO	27445	broad.mit.edu	37	7	82785457	82785457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:82785457G>A	uc003uhx.2	-	2	789	c.500C>T	c.(499-501)TCC>TTC	p.S167F	PCLO_uc003uhv.2_Missense_Mutation_p.S167F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	167					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TACAACAGAGGAAACAGCACT	0.403													32	50					0	0	0.041601	0	0
SEMA3D	223117	broad.mit.edu	37	7	84751159	84751159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:84751159G>A	uc003uic.2	-	1	89	c.49C>T	c.(49-51)CAC>TAC	p.H17Y	SEMA3D_uc010led.2_Missense_Mutation_p.H17Y|SEMA3D_uc010lee.1_Missense_Mutation_p.H17Y	NM_152754	NP_689967	O95025	SEM3D_HUMAN	semaphorin 3D precursor	17					cell differentiation|nervous system development	extracellular region|membrane	receptor activity			ovary(3)|large_intestine(2)	5						GGAAAAAGGTGAAAATCTTGG	0.343													12	39					0	0	0.105934	0	0
FAM200A	221786	broad.mit.edu	37	7	99145873	99145873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:99145873G>A	uc003ura.2	-	2	497	c.158C>T	c.(157-159)TCT>TTT	p.S53F	FAM200A_uc003urb.2_Missense_Mutation_p.S53F	NM_145111	NP_659802	Q8TCP9	F200A_HUMAN	hypothetical protein LOC221786	53	Extracellular (Potential).					integral to membrane	nucleic acid binding				0						catagttgtagagcgactgag	0.114													15	19					0	0	0.020292	0	0
LRCH4	4034	broad.mit.edu	37	7	100179448	100179448	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:100179448G>A	uc003uvj.2	-	4	603	c.550C>T	c.(550-552)CTG>TTG	p.L184L	LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjx.1_RNA	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	184	LRR 7.				nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AGGTCCCGCAGGGAAGAGAGG	0.557													28	46					0	0	0.030593	0	0
ZAN	7455	broad.mit.edu	37	7	100349677	100349677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:100349677C>T	uc003uwj.2	+	14	2114	c.1949C>T	c.(1948-1950)TCC>TTC	p.S650F	ZAN_uc003uwk.2_Missense_Mutation_p.S650F|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	650	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCCACCATTTCCACAGAAAAA	0.522													17	28					0	0	0.033300	0	0
MUC17	140453	broad.mit.edu	37	7	100678451	100678451	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:100678451A>C	uc003uxp.1	+	3	3807	c.3754A>C	c.(3754-3756)ACT>CCT	p.T1252P	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1252	Extracellular (Potential).|Ser-rich.|19.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACCTGTGACCACTTCTGCTGA	0.493													151	205					0	0	0.048971	0	0
TRIM56	81844	broad.mit.edu	37	7	100732537	100732537	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:100732537C>T	uc003uxq.2	+	3	2175	c.1944C>T	c.(1942-1944)TTC>TTT	p.F648F	TRIM56_uc003uxr.2_Intron	NM_030961	NP_112223	Q9BRZ2	TRI56_HUMAN	tripartite motif-containing 56	648					defense response to virus|interferon-beta production|protein K63-linked ubiquitination|response to type I interferon	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			kidney(1)|central_nervous_system(1)|skin(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)					AGGGGCATTTCGTGGGGTCGG	0.652													69	121					0	0	0.048971	0	0
SLC26A5	375611	broad.mit.edu	37	7	103029843	103029843	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:103029843T>C	uc003vbz.2	-	13	1576	c.1340A>G	c.(1339-1341)AAC>AGC	p.N447S	SLC26A5_uc003vbt.1_Missense_Mutation_p.N447S|SLC26A5_uc003vbu.1_Missense_Mutation_p.N447S|SLC26A5_uc003vbv.1_Intron|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Intron|SLC26A5_uc003vby.2_Intron|SLC26A5_uc010liy.2_Intron	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	447	Helical; Name=11; (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						TCCCTTCAGGTTGACAATCAC	0.478													28	38					0	0	0.030593	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519169	113519169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:113519169C>T	uc010ljy.1	-	4	2009	c.1978G>A	c.(1978-1980)GAA>AAA	p.E660K		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	660					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CCCTGACTTTCCAGAACATTC	0.368													64	139					0	0	0.048971	0	0
ST7	7982	broad.mit.edu	37	7	116869938	116869938	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:116869938A>C	uc011knn.1	+	14	1470	c.1465A>C	c.(1465-1467)ACC>CCC	p.T489P	ST7_uc003vio.2_3'UTR|ST7_uc003viq.2_3'UTR|ST7_uc011knm.1_3'UTR|ST7_uc003vir.2_3'UTR	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	Error:Variant_position_missing_in_Q9NRC1_after_alignment						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		CACTCACCTCACCCGCCGCTG	0.507													10	26					0	0	0.048971	0	0
CFTR	1080	broad.mit.edu	37	7	117267580	117267580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:117267580G>A	uc003vjd.2	+	22	3605	c.3473G>A	c.(3472-3474)CGA>CAA	p.R1158Q	CFTR_uc011knq.1_Missense_Mutation_p.R564Q	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	1158	Cytoplasmic (Potential).				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TTTCAGATGCGATCTGTGAGC	0.343									Cystic_Fibrosis				20	33					0	0	0.049695	0	0
KCND2	3751	broad.mit.edu	37	7	120385961	120385961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:120385961G>A	uc003vjj.1	+	5	2560	c.1595G>A	c.(1594-1596)CGA>CAA	p.R532Q		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	532	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TGCTGTTCACGACGACACAAA	0.443													32	71					0	0	0.092188	0	0
C7orf58	79974	broad.mit.edu	37	7	120935617	120935617	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:120935617C>T	uc003vjq.3	+	23	3439	c.2992C>T	c.(2992-2994)CGA>TGA	p.R998*		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	998						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					AACAAATTTTCGATCGCCATA	0.358													27	62					0	0	0.050027	0	0
OPN1SW	611	broad.mit.edu	37	7	128415809	128415809	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:128415809G>A	uc003vnt.3	-	1	36	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_001708	NP_001699	P03999	OPSB_HUMAN	opsin 1 (cone pigments), short-wave-sensitive	12	Extracellular (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0						AGATATTTTTGAACAGATAAA	0.537													33	69					0	0	0.054565	0	0
FLNC	2318	broad.mit.edu	37	7	128478355	128478355	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:128478355G>C	uc003vnz.3	+	7	1291	c.1082G>C	c.(1081-1083)CGC>CCC	p.R361P	FLNC_uc003voa.3_Missense_Mutation_p.R361P	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	361	Filamin 1.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						AACATTGAACGCAGTCCCTTT	0.597													57	101					0	0	0.048971	0	0
NRF1	4899	broad.mit.edu	37	7	129348999	129348999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:129348999C>T	uc003voz.2	+	6	808	c.691C>T	c.(691-693)CCC>TCC	p.P231S	NRF1_uc003vpa.2_Missense_Mutation_p.P231S|NRF1_uc011kpa.1_Missense_Mutation_p.P70S|NRF1_uc003vpb.2_Missense_Mutation_p.P231S	NM_005011	NP_005002	Q16656	NRF1_HUMAN	nuclear respiratory factor 1	231					generation of precursor metabolites and energy|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1						AAGCTGCAAGCCCATCTGGTG	0.547													96	157					0	0	0.048971	0	0
ZC3HC1	51530	broad.mit.edu	37	7	129663458	129663458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:129663458G>A	uc003vpi.2	-	8	1153	c.1126C>T	c.(1126-1128)CGC>TGC	p.R376C	ZC3HC1_uc003vph.2_Missense_Mutation_p.R220C|ZC3HC1_uc010lma.2_Intron	NM_016478	NP_057562	Q86WB0	NIPA_HUMAN	zinc finger, C3HC type 1	376					cell division|mitosis	nucleus	protein kinase binding|zinc ion binding				0	Melanoma(18;0.0435)					GTCACTGGGCGAGTTCTGGTG	0.617													52	98					0	0	0.048971	0	0
PLXNA4	91584	broad.mit.edu	37	7	131895818	131895818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:131895818G>A	uc003vra.3	-	10	2411	c.2182C>T	c.(2182-2184)CCC>TCC	p.P728S		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	728	Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TGGGGCTGGGGGAGGTTCTTG	0.632													9	20					0	0	0.047766	0	0
AKR1D1	6718	broad.mit.edu	37	7	137792208	137792208	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:137792208C>T	uc003vtz.2	+	7	806	c.737C>T	c.(736-738)TCA>TTA	p.S246L	AKR1D1_uc011kqe.1_Missense_Mutation_p.S246L|AKR1D1_uc011kqf.1_Missense_Mutation_p.S205L|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	246					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						CTTCTAAACTCATTGGGGAAA	0.368													26	51					0	0	0.108266	0	0
KIAA1549	57670	broad.mit.edu	37	7	138566318	138566318	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:138566318T>C	uc011kql.1	-	11	4094	c.4045A>G	c.(4045-4047)AGT>GGT	p.S1349G	KIAA1549_uc011kqi.1_Missense_Mutation_p.S133G|KIAA1549_uc003vuk.3_Missense_Mutation_p.S1299G|KIAA1549_uc011kqj.1_Missense_Mutation_p.S1349G|KIAA1549_uc011kqk.1_Missense_Mutation_p.S133G	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1349						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CCCTTCACACTAGGGATCTGC	0.478			O	BRAF	pilocytic astrocytoma								18	27					0	0	0.038395	0	0
OR9A4	130075	broad.mit.edu	37	7	141619558	141619558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:141619558G>A	uc003vwu.1	+	1	883	c.883G>A	c.(883-885)GAT>AAT	p.D295N		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					CCTCCGGAATGATAAAGTCAT	0.458													36	63					0	0	0.104719	0	0
CLEC5A	23601	broad.mit.edu	37	7	141635671	141635671	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:141635671C>T	uc003vwv.1	-	5	485	c.288G>A	c.(286-288)AGG>AGA	p.R96R	CLEC5A_uc011krm.1_Silent_p.R73R|CLEC5A_uc003vww.1_Silent_p.R96R|CLEC5A_uc010lnq.1_Silent_p.R73R|CLEC5A_uc010lnr.1_Intron	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	96	C-type lectin.|Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					TGCAAAAGTCCCTGCTTTCAT	0.433													44	66					0	0	0.042209	0	0
EPHB6	2051	broad.mit.edu	37	7	142562271	142562271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:142562271C>T	uc011kst.1	+	7	1500	c.713C>T	c.(712-714)TCC>TTC	p.S238F	EPHB6_uc011ksu.1_Missense_Mutation_p.S238F|EPHB6_uc003wbs.2_5'UTR|EPHB6_uc003wbt.2_Intron|EPHB6_uc003wbu.2_5'UTR|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	238	Extracellular (Potential).|Cys-rich.					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					GTGCTCCGATCCTTTGCTTCC	0.662													81	123					0	0	0.048971	0	0
TRPV5	56302	broad.mit.edu	37	7	142625848	142625848	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:142625848G>A	uc003wby.1	-	6	964	c.700C>T	c.(700-702)CTT>TTT	p.L234F	TRPV5_uc003wbz.2_Missense_Mutation_p.L234F	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	234	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					TTGGGCACAAGGTCCAGGGGC	0.562													19	45					0	0	0.043863	0	0
TRPV5	56302	broad.mit.edu	37	7	142627511	142627511	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:142627511G>A	uc003wby.1	-	2	423	c.159C>T	c.(157-159)TCC>TCT	p.S53S	TRPV5_uc003wbz.2_Silent_p.S53S	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	53	ANK 1.|Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CATTTTCCTTGGATGCTCGAA	0.502													35	63					0	0	0.059317	0	0
OR2A12	346525	broad.mit.edu	37	7	143792418	143792418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:143792418C>T	uc011kty.1	+	1	218	c.218C>T	c.(217-219)GCC>GTC	p.A73V		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	73	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					ATGTCCTATGCCTCGAGTACT	0.453													4	92					0	0	0.009096	0	0
ARHGEF35	445328	broad.mit.edu	37	7	143884382	143884382	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr7:143884382C>T	uc003wdz.1	-	2	1213	c.1095G>A	c.(1093-1095)AAG>AAA	p.K365K		NM_001003702	NP_001003702	A5YM69	ARG35_HUMAN	Rho guanine nucleotide exchange factor (GEF)	365	Glu-rich.										0						CCCCTTTCTCCTTTATACCAT	0.547													33	11					0	0	0.086207	0	0
CLN8	2055	broad.mit.edu	37	8	1728417	1728417	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:1728417C>T	uc003wpo.3	+	3	850	c.545C>T	c.(544-546)GCG>GTG	p.A182V		NM_018941	NP_061764	Q9UBY8	CLN8_HUMAN	ceroid-lipofuscinosis, neuronal 8	182	TLC.				cell death|ceramide biosynthetic process|cholesterol metabolic process|lipid transport|negative regulation of proteolysis|phospholipid metabolic process	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3		Ovarian(12;0.0563)|Colorectal(14;0.0815)|Hepatocellular(245;0.0831)		BRCA - Breast invasive adenocarcinoma(11;7.67e-05)|READ - Rectum adenocarcinoma(644;0.0913)		TCCATGCAGGCGGGCTGGTCC	0.453													23	61					0	0	0.091800	0	0
CSMD1	64478	broad.mit.edu	37	8	3081279	3081279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:3081279C>T	uc011kwk.1	-	28	4849	c.4459G>A	c.(4459-4461)GAC>AAC	p.D1487N	CSMD1_uc011kwj.1_Missense_Mutation_p.D879N|CSMD1_uc003wqe.2_Missense_Mutation_p.D643N	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1487	Extracellular (Potential).|CUB 9.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ATGACAAAGTCCGGGTTCACT	0.428													40	76					0	0	0.104719	0	0
CSMD1	64478	broad.mit.edu	37	8	3267101	3267101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:3267101G>A	uc011kwk.1	-	13	1981	c.1591C>T	c.(1591-1593)CCT>TCT	p.P531S	CSMD1_uc011kwj.1_5'UTR	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	531	Extracellular (Potential).|Sushi 3.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GGGATTCCAGGATCCCCACAC	0.473													4	12					0	0	0.029380	0	0
PPP1R3B	79660	broad.mit.edu	37	8	8998397	8998397	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:8998397G>A	uc003wsn.3	-	2	930	c.765C>T	c.(763-765)TCC>TCT	p.S255S	PPP1R3B_uc003wso.3_Silent_p.S254S	NM_024607	NP_078883	Q86XI6	PPR3B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	255					glycogen metabolic process					ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(149;0.0717)|READ - Rectum adenocarcinoma(644;0.241)		ACTGGTCAAAGGATATTCCCA	0.502													32	51					0	0	0.054565	0	0
DLC1	10395	broad.mit.edu	37	8	12957134	12957134	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:12957134G>A	uc003wwm.2	-	9	3156	c.2712C>T	c.(2710-2712)CCC>CCT	p.P904P	DLC1_uc003wwk.1_Silent_p.P467P|DLC1_uc003wwl.1_Silent_p.P501P|DLC1_uc011kxx.1_Silent_p.P393P	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	904					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						CGTCCAGCTCGGGGAAGATGT	0.582													11	28					0	0	0.093190	0	0
ADAM28	10863	broad.mit.edu	37	8	24209517	24209517	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:24209517C>T	uc003xdy.2	+	21	2279	c.2196C>T	c.(2194-2196)CCC>CCT	p.P732P	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Silent_p.P419P	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	732	Cytoplasmic (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		AGATGAAGCCCCATGTGTATG	0.373													25	46					0	0	0.034045	0	0
NEFL	4747	broad.mit.edu	37	8	24813375	24813375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:24813375C>T	uc003xee.2	-	1	757	c.655G>A	c.(655-657)GAA>AAA	p.E219K		NM_006158	NP_006149	P07196	NFL_HUMAN	neurofilament, light polypeptide 68kDa	219	Rod.|Coil 1B.				anterograde axon cargo transport|axon transport of mitochondrion|neurofilament bundle assembly|retrograde axon cargo transport|synaptic transmission	cytosol|neurofilament	identical protein binding|protein C-terminus binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.00965)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		AAAGAGATTTCGTCCATCAAG	0.627													14	28					0	0	0.024245	0	0
EXTL3	2137	broad.mit.edu	37	8	28574495	28574495	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:28574495C>T	uc003xgz.1	+	3	1512	c.919C>T	c.(919-921)CAG>TAG	p.Q307*		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	307	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		CTACACTGTCCAGTACAGACC	0.522													19	25					0	0	0.043863	0	0
KCNU1	157855	broad.mit.edu	37	8	36644919	36644919	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:36644919C>T	uc010lvw.2	+	2	378	c.291C>T	c.(289-291)GCC>GCT	p.A97A	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	97	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		TGCTTTCAGCCCAGACCTTTG	0.423													14	13					0	0	0.024245	0	0
KCNU1	157855	broad.mit.edu	37	8	36664931	36664931	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:36664931C>T	uc010lvw.2	+	6	706	c.619C>T	c.(619-621)CCT>TCT	p.P207S	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	207	Helical; Voltage-sensor; Name=Segment S4; (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		GCTAGAACTCCCTCAAATCTT	0.433													48	69					0	0	0.048971	0	0
IDO2	169355	broad.mit.edu	37	8	39872860	39872860	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:39872860C>T	uc010lwy.1	+	11	1244	c.1002C>T	c.(1000-1002)ATC>ATT	p.I334I	IDO2_uc003xno.1_RNA|IDO2_uc010lwz.1_Silent_p.I75I|IDO2_uc003xnp.1_Silent_p.I75I	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	321					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						GGGACTACATCCTGTCATCTG	0.507													14	57					0	0	0.105934	0	0
CHRNA6	8973	broad.mit.edu	37	8	42620267	42620267	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:42620267T>A	uc003xpj.2	-	2	206	c.160A>T	c.(160-162)AAC>TAC	p.N54Y	CHRNA6_uc011lcw.1_Missense_Mutation_p.N54Y	NM_004198	NP_004189	Q15825	ACHA6_HUMAN	cholinergic receptor, nicotinic, alpha 6	54	Extracellular.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(13;3.33e-12)|Lung NSC(13;9.17e-11)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00439)|Lung NSC(58;0.0124)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.0252)|LUSC - Lung squamous cell carcinoma(45;0.0869)			TCGGAAACGTTTTCCACAGGC	0.527													66	100					0	0	0.048971	0	0
POTEA	340441	broad.mit.edu	37	8	43157211	43157211	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:43157211G>A	uc003xpz.1	+	5	834	c.791G>A	c.(790-792)GGA>GAA	p.G264E	POTEA_uc003xqa.1_Intron	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	264										ovary(1)	1						GATGTATTTGGACAAACTGCT	0.308													37	54					0	0	0.074837	0	0
PRKDC	5591	broad.mit.edu	37	8	48690306	48690306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:48690306G>A	uc003xqi.2	-	85	12040	c.11983C>T	c.(11983-11985)CCT>TCT	p.P3995S	PRKDC_uc003xqj.2_Missense_Mutation_p.P3964S|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	3995	PI3K/PI4K.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				AGCAGGCCAGGGTCTGAGCGG	0.478								NHEJ					84	130					0	0	0.048971	0	0
C8orf22	492307	broad.mit.edu	37	8	49985398	49985398	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:49985398C>T	uc003xqq.3	+	2	192	c.9C>T	c.(7-9)TCC>TCT	p.S3S		NM_001007176	NP_001007177	Q8WWR9	PDPFL_HUMAN	hypothetical protein LOC492307	3											0		all_cancers(86;0.0452)|all_epithelial(80;0.000863)|Lung NSC(129;0.0019)|all_lung(136;0.00502)				CCATGGCATCCGTACCTTCCA	0.418													68	99					0	0	0.048971	0	0
TOX	9760	broad.mit.edu	37	8	59852082	59852082	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:59852082C>T	uc003xtw.1	-	3	411	c.190G>A	c.(190-192)GAA>AAA	p.E64K		NM_014729	NP_055544	O94900	TOX_HUMAN	thymus high mobility group box protein TOX	64						nucleus	DNA binding			kidney(2)|lung(1)|skin(1)	4		all_cancers(86;0.165)|Myeloproliferative disorder(644;0.00452)|all_lung(136;0.036)|Lung NSC(129;0.0464)|all_epithelial(80;0.0607)				TCTTCACTTTCCAGGCTTGGA	0.443													31	64					0	0	0.054565	0	0
CHD7	55636	broad.mit.edu	37	8	61748831	61748831	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:61748831C>T	uc003xue.2	+	16	4455	c.3978C>T	c.(3976-3978)CTC>CTT	p.L1326L		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1326	Helicase C-terminal.				central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			AAGACTACCTCATTCAAAGAC	0.463													18	30					0	0	0.043863	0	0
PREX2	80243	broad.mit.edu	37	8	69012065	69012065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:69012065C>T	uc003xxv.1	+	23	2729	c.2702C>T	c.(2701-2703)TCC>TTC	p.S901F	PREX2_uc003xxu.1_Missense_Mutation_p.S901F|PREX2_uc011lez.1_Missense_Mutation_p.S836F	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	901					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CAGAGAATATCCAGTTATAAA	0.284													31	44					0	0	0.045705	0	0
HNF4G	3174	broad.mit.edu	37	8	76465340	76465340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:76465340G>A	uc003yaq.2	+	6	682	c.412G>A	c.(412-414)GAT>AAT	p.D138N	HNF4G_uc003yar.2_Missense_Mutation_p.D175N	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	138					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			AAGTATTGGTGATGTCTGTGA	0.363													25	51					0	0	0.091800	0	0
ZFHX4	79776	broad.mit.edu	37	8	77764018	77764018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:77764018G>A	uc003yav.2	+	10	5113	c.4726G>A	c.(4726-4728)GCT>ACT	p.A1576T	ZFHX4_uc003yau.1_Missense_Mutation_p.A1621T|ZFHX4_uc003yaw.1_Missense_Mutation_p.A1576T	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1576						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CCAGACAAAGGCTAGGGCTGC	0.517										HNSCC(33;0.089)			29	47					0	0	0.054565	0	0
CA3	761	broad.mit.edu	37	8	86351966	86351966	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:86351966C>T	uc003ydj.2	+	2	143	c.60C>T	c.(58-60)TTC>TTT	p.F20F	CA13_uc003ydf.1_RNA|CA3_uc011lfv.1_RNA	NM_005181	NP_005172	P07451	CAH3_HUMAN	carbonic anhydrase III	20					one-carbon metabolic process	cytoplasm	carbonate dehydratase activity|zinc ion binding				0						ATGAACTTTTCCCAAATGCCA	0.478													18	31					0	0	0.049695	0	0
CNGB3	54714	broad.mit.edu	37	8	87679166	87679166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:87679166C>T	uc003ydx.2	-	6	885	c.839G>A	c.(838-840)GGA>GAA	p.G280E	CNGB3_uc010maj.2_Missense_Mutation_p.G142E	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	280	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						TATGTCTCCTCCTCTTACAAA	0.383													18	27					0	0	0.038395	0	0
UBR5	51366	broad.mit.edu	37	8	103324674	103324674	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:103324674G>A	uc003ykr.1	-	17	2080	c.2047C>T	c.(2047-2049)CCA>TCA	p.P683S	UBR5_uc003yks.1_Missense_Mutation_p.P683S	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	683					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			GAGGTTCCTGGAAATTTTACA	0.378													25	54					0	0	0.034045	0	0
BAALC	79870	broad.mit.edu	37	8	104240299	104240299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:104240299G>A	uc003yld.2	+	3	615	c.410G>A	c.(409-411)CGA>CAA	p.R137Q	BAALC_uc003yle.2_3'UTR|uc003ylf.2_Intron|BAALC_uc003ylg.2_Missense_Mutation_p.R83Q|BAALC_uc010mcc.2_RNA	NM_024812	NP_079088	Q8WXS3	BAALC_HUMAN	brain and acute leukemia, cytoplasmic isoform 1	172						centrosome|membrane|nucleus					0			OV - Ovarian serous cystadenocarcinoma(57;3.49e-05)|STAD - Stomach adenocarcinoma(118;0.133)			GACAGAAGTCGAAGAATCACA	0.438													23	36					0	0	0.083992	0	0
TRPS1	7227	broad.mit.edu	37	8	116617158	116617158	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:116617158G>T	uc003ynz.2	-	3	1458	c.999C>A	c.(997-999)TTC>TTA	p.F333L	TRPS1_uc011lhy.1_Missense_Mutation_p.F337L|TRPS1_uc003yny.2_Missense_Mutation_p.F346L|TRPS1_uc010mcy.2_Missense_Mutation_p.F333L	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	333	C2H2-type 2; atypical.				negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			ATTTACAGCGGAAATACTTGG	0.408									Langer-Giedion_syndrome				39	54					3.76114e-14	3.86943e-14	0.069456	1	0
EXT1	2131	broad.mit.edu	37	8	118830695	118830695	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:118830695G>A	uc003yok.1	-	7	2384	c.1611C>T	c.(1609-1611)GTC>GTT	p.V537V		NM_000127	NP_000118	Q16394	EXT1_HUMAN	exostosin 1	537	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction|skeletal system development	Golgi membrane|integral to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|lung(2)	4	all_cancers(13;2.36e-26)|Lung NSC(37;5.02e-07)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.012)			CTTCAATGACGACGACAGGCA	0.532			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses|Langer-Giedion_syndrome				44	162					0	0	0.048971	0	0
FER1L6	654463	broad.mit.edu	37	8	124968253	124968253	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:124968253G>A	uc003yqw.2	+	2	221	c.15G>A	c.(13-15)AAG>AAA	p.K5K		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	5	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			TTGGGCTGAAGGTGAAGAAGA	0.443													13	20					0	0	0.024245	0	0
FER1L6	654463	broad.mit.edu	37	8	125052191	125052191	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:125052191G>A	uc003yqw.2	+	20	2739	c.2533G>A	c.(2533-2535)GGA>AGA	p.G845R	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	845	Cytoplasmic (Potential).|C2 3.					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			TGACAGCAATGGACTTTCAGA	0.522													49	73					0	0	0.048971	0	0
SQLE	6713	broad.mit.edu	37	8	126017847	126017847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:126017847C>T	uc011liq.1	+	3	1551	c.625C>T	c.(625-627)CCT>TCT	p.P209S		NM_003129	NP_003120	Q14534	ERG1_HUMAN	squalene epoxidase	209					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome	flavin adenine dinucleotide binding|squalene monooxygenase activity			ovary(1)|breast(1)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)		Butenafine(DB01091)|Naftifine(DB00735)|Terbinafine(DB00857)	GGTTCAGATTCCTTACCCTCT	0.448													66	91					0	0	0.048971	0	0
LRRC6	23639	broad.mit.edu	37	8	133645203	133645203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:133645203C>T	uc003ytk.2	-	5	510	c.436G>A	c.(436-438)GAT>AAT	p.D146N	LRRC6_uc003ytl.2_RNA	NM_012472	NP_036604	Q86X45	LRRC6_HUMAN	leucine rich repeat containing 6	146	LRRCT.					cytoplasm				ovary(1)|kidney(1)	2	Ovarian(258;0.00352)|Esophageal squamous(12;0.00507)|all_neural(3;0.0052)|Medulloblastoma(3;0.0922)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			TCTTTACCATCCAACCACTTA	0.343													22	31					0	0	0.055883	0	0
TG	7038	broad.mit.edu	37	8	134025976	134025976	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:134025976C>T	uc003ytw.2	+	37	6570	c.6529C>T	c.(6529-6531)CGT>TGT	p.R2177C	TG_uc010mdw.2_Missense_Mutation_p.R936C|TG_uc011ljb.1_Missense_Mutation_p.R546C|TG_uc011ljc.1_Missense_Mutation_p.R310C	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2177	Type IIIA.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		ACTTCTGCTTCGTGAAGAGGC	0.527													15	20					0	0	0.024245	0	0
FAM135B	51059	broad.mit.edu	37	8	139165175	139165175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:139165175C>T	uc003yuy.2	-	13	1714	c.1543G>A	c.(1543-1545)GAA>AAA	p.E515K	FAM135B_uc003yux.2_Missense_Mutation_p.E416K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.E77K|FAM135B_uc003yvb.2_Missense_Mutation_p.E77K	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	515										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CATTCATCTTCAGGCACACCT	0.463										HNSCC(54;0.14)			58	71					0	0	0.048971	0	0
GPR20	2843	broad.mit.edu	37	8	142367271	142367271	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:142367271G>A	uc003ywf.2	-	2	842	c.753C>T	c.(751-753)CTC>CTT	p.L251L		NM_005293	NP_005284	Q99678	GPR20_HUMAN	G protein-coupled receptor 20	251	Helical; Name=6; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(97;4.32e-16)|all_epithelial(106;6.61e-14)|Lung NSC(106;9.4e-06)|all_lung(105;1.35e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0415)			TGAAGCAGACGAGAAAGATGA	0.677													8	12					0	0	0.047766	0	0
CYP11B1	1584	broad.mit.edu	37	8	143961104	143961104	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:143961104G>A	uc003yxi.2	-	1	133	c.126C>T	c.(124-126)CCC>CCT	p.P42P	CYP11B1_uc003yxj.2_Silent_p.P42P|CYP11B1_uc010mey.2_Silent_p.P42P	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	42			P -> S (in AH4; non-classic).		aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	CTGGACGCCGGGGCATGGCTT	0.637									Familial_Hyperaldosteronism_type_I				30	54					0	0	0.050027	0	0
ZNF623	9831	broad.mit.edu	37	8	144732412	144732412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:144732412C>T	uc003yzd.2	+	1	459	c.370C>T	c.(370-372)CCT>TCT	p.P124S	ZNF623_uc011lkp.1_Missense_Mutation_p.P84S|ZNF623_uc003yzc.2_Missense_Mutation_p.P84S	NM_014789	NP_055604	O75123	ZN623_HUMAN	zinc finger protein 623 isoform 1	124	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;5.28e-40)|all cancers(56;5.23e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GGAAGCCAATCCTTGCAATAT	0.478													39	104					0	0	0.048971	0	0
SLC39A4	55630	broad.mit.edu	37	8	145637949	145637949	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:145637949G>A	uc003zcq.2	-	12	2017	c.1917C>T	c.(1915-1917)TCC>TCT	p.S639S	SLC39A4_uc003zcm.1_3'UTR|SLC39A4_uc003zcn.2_Silent_p.S141S|SLC39A4_uc003zco.2_Silent_p.S363S|SLC39A4_uc003zcp.2_Silent_p.S614S	NM_130849	NP_570901	Q6P5W5	S39A4_HUMAN	solute carrier family 39 (zinc transporter),	639	Extracellular (Potential).					cytoplasmic membrane-bounded vesicle|integral to membrane|recycling endosome membrane	zinc ion transmembrane transporter activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;1.12e-40)|all cancers(56;8.17e-36)|BRCA - Breast invasive adenocarcinoma(115;0.0407)|Colorectal(110;0.055)			CCTCGTACAGGGACAGCAGCA	0.602													4	179					0	0	0.009096	0	0
CYHR1	50626	broad.mit.edu	37	8	145689869	145689869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:145689869G>A	uc003zcv.2	-	2	354	c.220C>T	c.(220-222)CCC>TCC	p.P74S	CYHR1_uc003zcw.2_Missense_Mutation_p.P74S|CYHR1_uc003zcx.2_Missense_Mutation_p.P74S|CYHR1_uc003zcy.2_Missense_Mutation_p.P74S|KIFC2_uc003zcz.2_5'Flank	NM_138496	NP_612505	Q6ZMK1	CYHR1_HUMAN	cysteine/histidine-rich 1 isoform 1	74	RING-type; degenerate.					perinuclear region of cytoplasm	zinc ion binding				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GCCAGAAGGGGAAGGCCGATG	0.662													12	55					0	0	0.080935	0	0
ZNF34	80778	broad.mit.edu	37	8	145999521	145999521	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr8:145999521C>T	uc003zdy.3	-	6	915	c.813G>A	c.(811-813)CGG>CGA	p.R271R	ZNF34_uc010mgb.2_Silent_p.R168R|ZNF34_uc003zdx.3_Silent_p.R250R	NM_030580	NP_085057	Q8IZ26	ZNF34_HUMAN	zinc finger protein 34	271	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.221)	OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;5.18e-38)|all cancers(56;4.41e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.0179)		CAGTGTGAAGCCGCTGATGCT	0.448													41	52					0	0	0.039052	0	0
PTPRD	5789	broad.mit.edu	37	9	8331707	8331707	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:8331707G>A	uc003zkk.2	-	43	6120	c.5409C>T	c.(5407-5409)TTC>TTT	p.F1803F	PTPRD_uc003zkp.2_Silent_p.F1397F|PTPRD_uc003zkq.2_Silent_p.F1396F|PTPRD_uc003zkr.2_Silent_p.F1387F|PTPRD_uc003zks.2_Silent_p.F1396F|PTPRD_uc003zkl.2_Silent_p.F1794F|PTPRD_uc003zkm.2_Silent_p.F1790F|PTPRD_uc003zkn.2_Silent_p.F1392F|PTPRD_uc003zko.2_Silent_p.F1393F	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1803	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CAGTGAACTGGAACTGCCTTA	0.517										TSP Lung(15;0.13)			35	16					0	0	0.069456	0	0
PTPRD	5789	broad.mit.edu	37	9	8486278	8486278	+	Missense_Mutation	SNP	C	T	T	rs143787300		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:8486278C>T	uc003zkk.2	-	27	3250	c.2539G>A	c.(2539-2541)GTG>ATG	p.V847M	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.V838M|PTPRD_uc003zkm.2_Missense_Mutation_p.V834M|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	847	Fibronectin type-III 6.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		AATGTGTCCACCGGAGGGTGC	0.478										TSP Lung(15;0.13)			53	21					0	0	0.048971	0	0
BNC2	54796	broad.mit.edu	37	9	16552649	16552649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:16552649G>A	uc003zml.2	-	5	688	c.548C>T	c.(547-549)CCT>CTT	p.P183L	BNC2_uc011lmw.1_Missense_Mutation_p.P88L|BNC2_uc003zmm.2_Missense_Mutation_p.P141L|BNC2_uc003zmq.1_Missense_Mutation_p.P197L|BNC2_uc003zmr.1_Missense_Mutation_p.P220L|BNC2_uc003zmp.1_Missense_Mutation_p.P211L|BNC2_uc010mij.1_Missense_Mutation_p.P105L|BNC2_uc011lmv.1_Missense_Mutation_p.P9L|BNC2_uc003zmo.1_Missense_Mutation_p.P105L	NM_017637	NP_060107	Q6ZN30	BNC2_HUMAN	basonuclin 2	183					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	zinc ion binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(50;9.01e-08)		TAGCCGCACAGGCACTGCTTG	0.567													17	35					0	0	0.049695	0	0
CNTLN	54875	broad.mit.edu	37	9	17457623	17457623	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:17457623C>T	uc003zmz.2	+	19	3239	c.3213C>T	c.(3211-3213)TCC>TCT	p.S1071S	CNTLN_uc003zmy.2_Silent_p.S1072S|CNTLN_uc010mio.2_Silent_p.S751S	NM_017738	NP_060208	Q9NXG0	CNTLN_HUMAN	centlein isoform 1	1072	Potential.					centriole|membrane	two-component sensor activity			pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.14e-10)		AAGAAAATTCCCAGGTAACAT	0.363													25	28					0	0	0.034045	0	0
KIAA1797	54914	broad.mit.edu	37	9	20907175	20907175	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:20907175C>T	uc003zog.1	+	24	3015	c.2652C>T	c.(2650-2652)CAC>CAT	p.H884H	KIAA1797_uc003zoh.1_Silent_p.H320H	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	884						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		caGAGTGGCACCGTGCAATTT	0.269													82	33					0	0	0.048971	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971186	21971187	+	Nonsense_Mutation	DNP	GG	AA	AA	rs121913387		TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:21971186_21971187GG>AA	uc003zpk.2	-	2	383_384	c.171_172CC>TT	c.(169-174)GCCCGA>GCTTGA	p.R58*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.P113L	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	58	ANK 2.				cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.R58*(68)|p.?(14)|p.M53_R58del(3)|p.R58fs*59(2)|p.M54fs*61(2)|p.R58fs*89(1)|p.R58R(1)|p.V28_V51del(1)|p.A57_R58>V*(1)|p.R58fs*61(1)|p.R58fs*62(1)|p.G55fs*86(1)|p.A57A(1)|p.R58Q(1)|p.P113L(1)|p.A57fs*85(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		TCCGCCACTCGGGCGCTGCCCA	0.678		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			49	29					0	0	0.004672	0	0
LOC442421	442421	broad.mit.edu	37	9	66499793	66499794	+	Missense_Mutation	DNP	GC	AT	AT	rs138477209	by1000genomes	TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:66499793_66499794GC>AT	uc004aee.1	+	1	603_604	c.603_604GC>AT	c.(601-606)TCGCGC>TCATGC	p.R202C	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						TGTGCAAGTCGCGCAAGGAGCA	0.584													6	23					0	0	0.004672	0	0
LOC442421	442421	broad.mit.edu	37	9	66500841	66500841	+	RNA	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:66500841C>T	uc004aed.1	+	3		c.934C>T								Homo sapiens similar to prostaglandin E receptor 4, subtype EP4; PGE receptor, EP4 subtype; prostaglandin E2 receptor, mRNA (cDNA clone IMAGE:5288780).												0						CCACCTGGTGCCCAGGGCTCC	0.632													3	18					0	0	0.004672	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71555700	71555700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:71555700C>T	uc004agu.2	+	14	1801	c.1496C>T	c.(1495-1497)TCA>TTA	p.S499L	PIP5K1B_uc011lrq.1_Missense_Mutation_p.S499L|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	499						endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		ACACTCTATTCAAACAGGTAA	0.438													16	56					0	0	0.028581	0	0
APBA1	320	broad.mit.edu	37	9	72131836	72131836	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:72131836G>A	uc004ahh.2	-	2	567	c.291C>T	c.(289-291)ATC>ATT	p.I97I		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	97					axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						GGGCCGCGGCGATCACGTCGC	0.716													12	4					0	0	0.024245	0	0
TMEM2	23670	broad.mit.edu	37	9	74324376	74324376	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:74324376G>A	uc011lsa.1	-	17	3324	c.2784C>T	c.(2782-2784)GTC>GTT	p.V928V	TMEM2_uc010mos.2_Silent_p.V865V|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	928						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		TTCCAAAAAAGACATTCAGAG	0.458													25	11					0	0	0.099896	0	0
RORB	6096	broad.mit.edu	37	9	77282758	77282758	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:77282758C>T	uc004aji.2	+	8	1134	c.1085C>T	c.(1084-1086)TCC>TTC	p.S362F	RORB_uc004ajh.2_Missense_Mutation_p.S351F	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	362	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						AATTTGTGTTCCTTGCAGCTG	0.383													49	25					0	0	0.048971	0	0
TEX10	54881	broad.mit.edu	37	9	103109085	103109085	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:103109085T>C	uc004bas.2	-	3	999	c.784A>G	c.(784-786)AGC>GGC	p.S262G	TEX10_uc011lvf.1_Missense_Mutation_p.S101G|TEX10_uc011lvg.1_Missense_Mutation_p.S265G|TEX10_uc011lvh.1_Missense_Mutation_p.S197G|TEX10_uc004bat.2_Missense_Mutation_p.S262G	NM_017746	NP_060216	Q9NXF1	TEX10_HUMAN	testis expressed 10 isoform 1	262						integral to membrane|MLL1 complex|nuclear membrane|nucleolus	binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)		OV - Ovarian serous cystadenocarcinoma(323;0.157)		ATGGAGTTGCTAGTGGCATGG	0.448													88	52					0	0	0.048971	0	0
OR13C3	138803	broad.mit.edu	37	9	107298775	107298775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:107298775G>A	uc004bcb.1	-	1	320	c.320C>T	c.(319-321)TCT>TTT	p.S107F		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	107	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						TGAGGGAACAGAGGAGGATGT	0.423													36	28					0	0	0.054565	0	0
OR13C8	138802	broad.mit.edu	37	9	107331452	107331452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:107331452G>A	uc011lvo.1	+	1	4	c.4G>A	c.(4-6)GAA>AAA	p.E2K		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATGTAATATGGAAAGGACCAA	0.393													41	17					0	0	0.092188	0	0
C9orf152	401546	broad.mit.edu	37	9	112969737	112969737	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:112969737G>A	uc011lwk.1	-	1	677	c.123C>T	c.(121-123)TTC>TTT	p.F41F		NM_001012993	NP_001013011	Q5JTZ5	CI152_HUMAN	hypothetical protein LOC401546	41											0						GGGCTCGCAGGAACTGGATGC	0.612													57	32					0	0	0.048971	0	0
MUSK	4593	broad.mit.edu	37	9	113563067	113563067	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:113563067C>T	uc004bey.2	+	14	2507	c.2409C>T	c.(2407-2409)TAC>TAT	p.Y803Y	MUSK_uc004bez.1_Silent_p.Y383Y	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	803	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						TGCAGCCCTACTATGGGATGG	0.537													25	14					0	0	0.076483	0	0
TLR4	7099	broad.mit.edu	37	9	120476865	120476865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:120476865C>T	uc004bjz.2	+	3	2750	c.2459C>T	c.(2458-2460)TCA>TTA	p.S820L	TLR4_uc004bka.2_Missense_Mutation_p.S780L|TLR4_uc004bkb.2_Missense_Mutation_p.S620L	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	820	Cytoplasmic (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						GATGGTAAATCATGGAATCCA	0.502													75	41					0	0	0.048971	0	0
GSN	2934	broad.mit.edu	37	9	124094751	124094751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:124094751G>A	uc004blf.1	+	17	2280	c.2219G>A	c.(2218-2220)CGG>CAG	p.R740Q	GSN_uc004bld.1_Missense_Mutation_p.R689Q|GSN_uc010mvq.1_Missense_Mutation_p.R700Q|GSN_uc010mvr.1_Missense_Mutation_p.R700Q|GSN_uc010mvu.1_Missense_Mutation_p.R689Q|GSN_uc010mvt.1_Missense_Mutation_p.R689Q|GSN_uc010mvs.1_Missense_Mutation_p.R689Q|GSN_uc004ble.1_Missense_Mutation_p.R689Q|GSN_uc010mvv.1_Missense_Mutation_p.R689Q|GSN_uc011lyh.1_Missense_Mutation_p.R706Q|GSN_uc011lyi.1_Missense_Mutation_p.R689Q|GSN_uc011lyj.1_Missense_Mutation_p.R713Q	NM_000177	NP_000168	P06396	GELS_HUMAN	gelsolin isoform a precursor	740	Actin-binding, Ca-sensitive (Potential).				actin filament polymerization|actin filament severing|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|cilium morphogenesis	actin cytoskeleton|cytosol	actin binding|calcium ion binding|protein binding			breast(2)|ovary(1)	3						AATCGGGATCGGCGGACGCCC	0.577											OREG0019445	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	30					0	0	0.034045	0	0
GSN	2934	broad.mit.edu	37	9	124094753	124094753	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:124094753C>G	uc004blf.1	+	17	2282	c.2221C>G	c.(2221-2223)CGG>GGG	p.R741G	GSN_uc004bld.1_Missense_Mutation_p.R690G|GSN_uc010mvq.1_Missense_Mutation_p.R701G|GSN_uc010mvr.1_Missense_Mutation_p.R701G|GSN_uc010mvu.1_Missense_Mutation_p.R690G|GSN_uc010mvt.1_Missense_Mutation_p.R690G|GSN_uc010mvs.1_Missense_Mutation_p.R690G|GSN_uc004ble.1_Missense_Mutation_p.R690G|GSN_uc010mvv.1_Missense_Mutation_p.R690G|GSN_uc011lyh.1_Missense_Mutation_p.R707G|GSN_uc011lyi.1_Missense_Mutation_p.R690G|GSN_uc011lyj.1_Missense_Mutation_p.R714G	NM_000177	NP_000168	P06396	GELS_HUMAN	gelsolin isoform a precursor	741	Actin-binding, Ca-sensitive (Potential).				actin filament polymerization|actin filament severing|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|cilium morphogenesis	actin cytoskeleton|cytosol	actin binding|calcium ion binding|protein binding			breast(2)|ovary(1)	3						TCGGGATCGGCGGACGCCCAT	0.572											OREG0019445	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	29					0	0	0.034045	0	0
COL5A1	1289	broad.mit.edu	37	9	137642408	137642408	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:137642408C>T	uc004cfe.2	+	12	1897	c.1515C>T	c.(1513-1515)GGC>GGT	p.G505G		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	505	Interrupted collagenous region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GACGCCCAGGCCTTCCTGGGG	0.662													42	26					0	0	0.039052	0	0
COL5A1	1289	broad.mit.edu	37	9	137658318	137658318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:137658318G>A	uc004cfe.2	+	22	2489	c.2107G>A	c.(2107-2109)GGC>AGC	p.G703S		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	703	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GGGTATGGACGGCCAGCCGGG	0.542													3	33					0	0	0.009096	0	0
ANAPC2	29882	broad.mit.edu	37	9	140079394	140079394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr9:140079394C>T	uc004clr.1	-	4	1092	c.1019G>A	c.(1018-1020)CGC>CAC	p.R340H	ANAPC2_uc004clq.1_Missense_Mutation_p.R199H	NM_013366	NP_037498	Q9UJX6	ANC2_HUMAN	anaphase-promoting complex subunit 2	340					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|cyclin catabolic process|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of synapse maturation|positive regulation of synaptic plasticity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|regulation of cyclin-dependent protein kinase activity	anaphase-promoting complex|cytosol|nucleoplasm	ubiquitin protein ligase binding|ubiquitin-protein ligase activity			ovary(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.000858)		CTCCTCGATGCGCAGGCTGGC	0.701													10	34					0	0	0.069234	0	0
MXRA5	25878	broad.mit.edu	37	X	3228206	3228207	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:3228206_3228207CC>TT	uc004crg.3	-	7	8194_8195	c.8037_8038GG>AA	c.(8035-8040)CTGGAG>CTAAAG	p.E2680K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2680	Ig-like C2-type 11.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TGGGGGCCCTCCAGATGCATGC	0.604													49	17					0	0	0.004672	0	0
TLR7	51284	broad.mit.edu	37	X	12906151	12906151	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:12906151C>T	uc004cvc.2	+	3	2663	c.2524C>T	c.(2524-2526)CTG>TTG	p.L842L		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	842	Helical; (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	TAACCTGATTCTGTTCTCACT	0.453													81	27					0	0	0.048971	0	0
BMX	660	broad.mit.edu	37	X	15555305	15555305	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:15555305G>A	uc004cww.2	+	14	1459	c.1271G>A	c.(1270-1272)GGA>GAA	p.G424E	BMX_uc004cwx.3_Missense_Mutation_p.G424E|BMX_uc004cwy.3_Missense_Mutation_p.G424E	NM_203281	NP_975010	P51813	BMX_HUMAN	BMX non-receptor tyrosine kinase	424	Protein kinase.|ATP (By similarity).				cellular component disassembly involved in apoptosis|intracellular signal transduction|mesoderm development	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(3)|ovary(2)	5	Hepatocellular(33;0.183)					AAGGAGCTGGGAAGTGGCCAG	0.483													89	30					0	0	0.048971	0	0
SHROOM4	57477	broad.mit.edu	37	X	50377589	50377589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:50377589G>A	uc004dpe.2	-	4	1510	c.1484C>T	c.(1483-1485)CCC>CTC	p.P495L	SHROOM4_uc004dpd.3_RNA|SHROOM4_uc004dpf.1_Missense_Mutation_p.P379L	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	495					actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					TCCATGTGGGGGACTGCTTTG	0.527													65	25					0	0	0.048971	0	0
Unknown	0	broad.mit.edu	37	X	51151080	51151080	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:51151080C>T	uc004dpj.2	+	1	1314	c.1212C>T	c.(1210-1212)GTC>GTT	p.V404V		NM_203407	NP_981952			hypothetical protein LOC340602																		GGCATGCAGTCCGTATGCGTG	0.597													25	5					0	0	0.037714	0	0
FAM120C	54954	broad.mit.edu	37	X	54161465	54161465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:54161465G>A	uc004dsz.3	-	7	1498	c.1415C>T	c.(1414-1416)TCC>TTC	p.S472F	FAM120C_uc011moh.1_Missense_Mutation_p.S472F	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	472										ovary(1)|central_nervous_system(1)	2						CAAAGCATGGGAGGAGAAGAG	0.488													18	4					0	0	0.043863	0	0
MAGEE2	139599	broad.mit.edu	37	X	75003316	75003316	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:75003316C>T	uc004ecj.1	-	1	1756	c.1571G>A	c.(1570-1572)TGA>TAA	p.*524*		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	524										ovary(1)|skin(1)	2						CCCTAGACTTCACGTGGGGTC	0.463													36	10					0	0	0.074837	0	0
CYLC1	1538	broad.mit.edu	37	X	83129138	83129138	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:83129138G>A	uc004eei.1	+	4	1443	c.1422G>A	c.(1420-1422)AAG>AAA	p.K474K	CYLC1_uc004eeh.1_Silent_p.K473K	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	474	6.				cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						ATGACAAAAAGAAGGATGCAA	0.358													10	3					0	0	0.058154	0	0
XKRX	402415	broad.mit.edu	37	X	100169882	100169882	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:100169882C>T	uc004egn.2	-	3	1400	c.795G>A	c.(793-795)TTG>TTA	p.L265L	XKRX_uc011mre.1_Silent_p.L61L	NM_212559	NP_997724	Q6PP77	XKR2_HUMAN	XK, Kell blood group complex subunit-related,	265						integral to membrane|plasma membrane				breast(1)	1						CCTTCAATTTCAAAGTGGCTG	0.512													53	18					0	0	0.048971	0	0
RBM41	55285	broad.mit.edu	37	X	106359888	106359888	+	Silent	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:106359888G>A	uc004emz.2	-	2	148	c.117C>T	c.(115-117)TCC>TCT	p.S39S	RBM41_uc004emy.1_Silent_p.S39S	NM_018301	NP_060771	Q96IZ5	RBM41_HUMAN	RNA binding motif protein 41	39							nucleotide binding|RNA binding			ovary(1)	1						ACTCCTCAATGGAGACAGAAG	0.428													42	13					0	0	0.092188	0	0
PHF6	84295	broad.mit.edu	37	X	133547593	133547593	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:133547593A>G	uc004exj.2	+	6	693	c.491A>G	c.(490-492)AAA>AGA	p.K164R	PHF6_uc004exk.2_Missense_Mutation_p.K164R|PHF6_uc011mvk.1_Missense_Mutation_p.K130R|PHF6_uc004exh.2_Missense_Mutation_p.K165R|PHF6_uc010nrr.2_Missense_Mutation_p.K164R|PHF6_uc004exi.2_Missense_Mutation_p.K165R	NM_001015877	NP_001015877	Q8IWS0	PHF6_HUMAN	PHD finger protein 6 isoform 1	164	Nucleolar localization signal (Potential).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					AAAAGTCGCAAAGGAAGGCCA	0.358													61	13					0	0	0.048971	0	0
GPR112	139378	broad.mit.edu	37	X	135427486	135427486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:135427486G>A	uc004ezu.1	+	6	1912	c.1621G>A	c.(1621-1623)GAA>AAA	p.E541K	GPR112_uc010nsb.1_Missense_Mutation_p.E336K|GPR112_uc010nsc.1_Missense_Mutation_p.E308K	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	541	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					ACCCAGAGTGGAAGATGCCAT	0.438													41	9					0	0	0.098360	0	0
VGLL1	51442	broad.mit.edu	37	X	135618248	135618248	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:135618248G>A	uc004ezy.2	+	2	239	c.69G>A	c.(67-69)TGG>TGA	p.W23*		NM_016267	NP_057351	Q99990	VGLL1_HUMAN	vestigial like 1	23					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	transcription coactivator activity				0	Acute lymphoblastic leukemia(192;0.000127)					AGACGGAATGGAATTCCCGGT	0.502													46	19					0	0	0.045515	0	0
AFF2	2334	broad.mit.edu	37	X	147985781	147985781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:147985781C>T	uc004fcp.2	+	9	1869	c.1390C>T	c.(1390-1392)CCT>TCT	p.P464S	AFF2_uc004fco.2_Missense_Mutation_p.P425S|AFF2_uc004fcq.2_Missense_Mutation_p.P454S|AFF2_uc004fcr.2_Missense_Mutation_p.P425S|AFF2_uc011mxb.1_Missense_Mutation_p.P429S|AFF2_uc004fcs.2_Missense_Mutation_p.P431S|AFF2_uc011mxc.1_Missense_Mutation_p.P105S	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	464					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					TAGGAATAATCCTGTGAAGTA	0.318													72	21					0	0	0.048971	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092693	151092693	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:151092693C>T	uc004fez.2	+	3	713	c.557C>T	c.(556-558)TCC>TTC	p.S186F	MAGEA4_uc004ffa.2_Missense_Mutation_p.S186F|MAGEA4_uc004ffb.2_Missense_Mutation_p.S186F|MAGEA4_uc004ffc.2_Missense_Mutation_p.S186F|MAGEA4_uc004ffd.2_Missense_Mutation_p.S186F	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	186	MAGE.						protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CTGGGCCTTTCCTATGATGGC	0.547													86	27					0	0	0.048971	0	0
VAMP7	6845	broad.mit.edu	37	X	155119165	155119165	+	Silent	SNP	C	T	T			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:155119165C>T	uc004fnr.2	+	2	210	c.36C>T	c.(34-36)ACC>ACT	p.T12T	VAMP7_uc004fnt.2_Silent_p.T12T|VAMP7_uc011naa.1_5'UTR|VAMP7_uc011nab.1_5'UTR|VAMP7_uc004fns.2_Silent_p.T12T|VAMP7_uc011nac.1_5'UTR	NM_005638	NP_005629	P51809	VAMP7_HUMAN	vesicle-associated membrane protein 7 isoform 1	12	Longin.|Cytoplasmic (Potential).				calcium ion-dependent exocytosis|endosome to lysosome transport|eosinophil degranulation|ER to Golgi vesicle-mediated transport|neutrophil degranulation|phagocytosis, engulfment|post-Golgi vesicle-mediated transport|protein transport|vesicle fusion	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|phagocytic vesicle membrane|plasma membrane|SNARE complex|transport vesicle membrane	protein binding				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CCAGGGGGACCACTATCCTTG	0.403													21	65					0	0	0.069288	0	0
CELA3B	23436	broad.mit.edu	37	1	22310316	22310319	+	Frame_Shift_Del	DEL	TCTC	-	-			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr1:22310316_22310319delTCTC	uc001bfk.2	+	5	607_610	c.492_495delTCTC	c.(490-495)CGTCTCfs	p.R164fs	CELA3B_uc009vqf.2_Intron	NM_007352	NP_031378	P08861	CEL3B_HUMAN	elastase 3B, pancreatic preproprotein	164_165	Peptidase S1.				cholesterol metabolic process|proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						GCTGGGGCCGTCTCTATAGTACGT	0.618													57	99	---	---	---	---					
TSKU	25987	broad.mit.edu	37	11	76506673	76506675	+	In_Frame_Del	DEL	CTG	-	-			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr11:76506673_76506675delCTG	uc001oxt.2	+	2	185_187	c.13_15delCTG	c.(13-15)CTGdel	p.L9del		NM_015516	NP_056331	Q8WUA8	TSK_HUMAN	tsukushin precursor	9						extracellular region					0	Ovarian(111;0.112)					GCCGTGGCCCCTGCTGCTGCTGC	0.616													9	97	---	---	---	---					
FRG1B	284802	broad.mit.edu	37	20	29628229	29628230	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr20:29628229_29628230insA	uc010ztl.1	+	3	173_174	c.141_142insA	c.(139-144)GGGAAAfs	p.G47fs	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_5'UTR					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						TCACTTAGGGGAAAATGGCTTT	0.322													12	98	---	---	---	---					
DIRC2	84925	broad.mit.edu	37	3	122525730	122525733	+	Frame_Shift_Del	DEL	TCCT	-	-			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:122525730_122525733delTCCT	uc003efw.3	+	2	509_512	c.370_373delTCCT	c.(370-375)TCCTTCfs	p.S124fs	DIRC2_uc010hrl.2_RNA|DIRC2_uc010hrm.2_Intron	NM_032839	NP_116228	Q96SL1	DIRC2_HUMAN	disrupted in renal carcinoma 2	124_125	Helical; (Potential).				transport	integral to membrane					0				GBM - Glioblastoma multiforme(114;0.0614)		GCTCCTGACATCCTTCCTTATGGT	0.328													24	53	---	---	---	---					
MBNL1	4154	broad.mit.edu	37	3	152018127	152018128	+	Frame_Shift_Ins	INS	-	GAGT	GAGT			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr3:152018127_152018128insGAGT	uc003ezm.2	+	1	934_935	c.145_146insGAGT	c.(145-147)CGAfs	p.R49fs	MBNL1_uc003ezh.2_Frame_Shift_Ins_p.R49fs|MBNL1_uc003ezi.2_Frame_Shift_Ins_p.R49fs|MBNL1_uc003ezj.2_Intron|MBNL1_uc003ezl.2_Frame_Shift_Ins_p.R49fs|MBNL1_uc003ezp.2_Frame_Shift_Ins_p.R49fs|MBNL1_uc003ezn.2_Frame_Shift_Ins_p.R49fs|MBNL1_uc003ezo.2_Frame_Shift_Ins_p.R49fs|MBNL1_uc003ezg.1_RNA|MBNL1_uc003ezk.1_RNA	NM_207293	NP_997176	Q9NR56	MBNL1_HUMAN	muscleblind-like 1 isoform c	49	C3H1-type 2.				embryonic limb morphogenesis|in utero embryonic development|myoblast differentiation|nervous system development	nucleus|stress granule	double-stranded RNA binding|protein binding|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			TGAAAATGGACGAGTAATCGCC	0.406													35	76	---	---	---	---					
LMNB1	4001	broad.mit.edu	37	5	126145890	126145891	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr5:126145890_126145891insG	uc003kud.1	+	4	1029_1030	c.661_662insG	c.(661-663)AGGfs	p.R221fs	LMNB1_uc003kuc.2_Frame_Shift_Ins_p.R221fs|LMNB1_uc010jdb.1_RNA|LMNB1_uc011cxb.1_Frame_Shift_Ins_p.R11fs	NM_005573	NP_005564	P20700	LMNB1_HUMAN	lamin B1	221	Rod.|Linker 2.				cellular component disassembly involved in apoptosis	lamin filament|nuclear inner membrane	protein binding|structural molecule activity			kidney(1)|central_nervous_system(1)	2		all_cancers(142;0.103)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.033)|OV - Ovarian serous cystadenocarcinoma(64;0.0398)|all cancers(49;0.0903)		CGAGACCAGAAGGAAGCATGAA	0.465													40	69	---	---	---	---					
HLA-A	3105	broad.mit.edu	37	6	29911319	29911319	+	Frame_Shift_Del	DEL	G	-	-	rs115073453	by1000genomes	TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chr6:29911319delG	uc003nol.2	+	3	618	c.618delG	c.(616-618)ACGfs	p.T206fs	HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc010jrq.2_Frame_Shift_Del_p.T85fs|HLA-A_uc003nok.2_Frame_Shift_Del_p.T85fs|HLA-A_uc003non.2_Frame_Shift_Del_p.T206fs|HLA-A_uc003noo.2_Frame_Shift_Del_p.T206fs|HLA-A_uc010jrr.2_Frame_Shift_Del_p.T206fs|HLA-A_uc003nom.2_Frame_Shift_Del_p.T85fs|HLA-A_uc010klp.2_Frame_Shift_Del_p.T178fs|HLA-A_uc011dmc.1_Frame_Shift_Del_p.T85fs|HLA-A_uc011dmd.1_Frame_Shift_Del_p.T85fs	NM_002116	NP_002107	P30443	1A01_HUMAN	major histocompatibility complex, class I, A	206	Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2						TGCAGCGCACGGGTACCAGGG	0.637									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of|Osteosarcoma_Familial_Clustering_of|Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of	Multiple Myeloma(9;0.094)			17	69	---	---	---	---					
DDX3X	1654	broad.mit.edu	37	X	41203282	41203282	+	Splice_Site	DEL	G	-	-			TCGA-EE-A2GP-06A-11D-A197-08	TCGA-EE-A2GP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e55fce20-893a-4a0a-8127-dc38affb1bb6	74bb2531-04f4-4ef5-bcc8-7796d33f5248	g.chrX:41203282delG	uc004dfe.2	+	9	1621	c.766_splice	c.e9-1	p.E256_splice	DDX3X_uc010nhf.1_Splice_Site_p.E240_splice|DDX3X_uc004dff.2_Splice_Site_p.E256_splice|DDX3X_uc011mkq.1_Splice_Site_p.E240_splice|DDX3X_uc011mkr.1_Splice_Site_p.E256_splice|DDX3X_uc011mks.1_Intron|DDX3X_uc004dfg.2_Splice_Site|DDX3X_uc011mkt.1_Splice_Site	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3						interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						TTATTTCTTAGGAAAATGGAA	0.373										HNSCC(61;0.18)			4	2	---	---	---	---					
