Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KLHL17	339451	broad.mit.edu	37	1	898516	898516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:898516G>A	uc001aca.1	+	7	1177	c.1070G>A	c.(1069-1071)GGA>GAA	p.G357E	KLHL17_uc001acc.1_RNA|KLHL17_uc010nyb.1_Missense_Mutation_p.E106K	NM_198317	NP_938073	Q6TDP4	KLH17_HUMAN	kelch-like 17	357	Interaction with F-actin (By similarity).|Kelch 1.				actin cytoskeleton organization	actin cytoskeleton|cell junction|postsynaptic density|postsynaptic membrane	protein complex scaffold				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.52e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.59e-23)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000469)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		GCCATCCACGGAGACTGTGAG	0.711													4	25					0	0	0.000248	0	0
TMEM52	339456	broad.mit.edu	37	1	1849479	1849479	+	Missense_Mutation	SNP	C	T	T	rs141967299		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:1849479C>T	uc001aij.2	-	5	508	c.472G>A	c.(472-474)GAT>AAT	p.D158N	TMEM52_uc001aii.2_Missense_Mutation_p.D143N	NM_178545	NP_848640	Q8NDY8	TMM52_HUMAN	transmembrane protein 52 precursor	158						integral to membrane					0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.82e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.75e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00435)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		ACAGCTTCATCGTAGGAGGGT	0.632													27	127					0	0	0.002096	0	0
WDR8	49856	broad.mit.edu	37	1	3551599	3551600	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:3551599_3551600CC>TT	uc001ako.2	-	8	885_886	c.777_778GG>AA	c.(775-780)ACGGAG>ACAAAG	p.E260K	WDR8_uc001akn.3_Missense_Mutation_p.E260K|WDR8_uc010nzi.1_3'UTR	NM_017818	NP_060288	Q9P2S5	WRP73_HUMAN	WD repeat domain 8	260	WD 4.					centrosome	protein binding				0	all_cancers(77;0.0128)|all_epithelial(69;0.00526)|Ovarian(185;0.0634)|Lung NSC(156;0.162)|all_lung(157;0.172)	all_epithelial(116;7.37e-22)|all_lung(118;8.23e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;4.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;4.16e-22)|GBM - Glioblastoma multiforme(42;1.05e-14)|Colorectal(212;1.19e-05)|BRCA - Breast invasive adenocarcinoma(365;2.67e-05)|COAD - Colon adenocarcinoma(227;5.82e-05)|Kidney(185;0.000364)|KIRC - Kidney renal clear cell carcinoma(229;0.00223)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		TGCCCAAACTCCGTGATCATTT	0.564													33	147					0	0	0.004672	0	0
NPHP4	261734	broad.mit.edu	37	1	5927849	5927849	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:5927849G>A	uc001alq.1	-	24	3689	c.3423C>T	c.(3421-3423)CTC>CTT	p.L1141L	NPHP4_uc001alr.1_Silent_p.L83L	NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	1141					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		TCAGGAAGGAGAGCTCCGGGT	0.637													14	59					0	0	0.002450	0	0
KIF1B	23095	broad.mit.edu	37	1	10342482	10342482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:10342482C>T	uc001aqx.3	+	15	1527	c.1325C>T	c.(1324-1326)TCC>TTC	p.S442F	KIF1B_uc001aqv.3_Missense_Mutation_p.S396F|KIF1B_uc001aqw.3_Missense_Mutation_p.S396F|KIF1B_uc001aqy.2_Missense_Mutation_p.S416F|KIF1B_uc001aqz.2_Missense_Mutation_p.S442F|KIF1B_uc001ara.2_Missense_Mutation_p.S402F|KIF1B_uc001arb.2_Missense_Mutation_p.S428F	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	442					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		CTCACTTCATCCCCATCTTCC	0.478													11	55					0	0	0.000978	0	0
CASZ1	54897	broad.mit.edu	37	1	10708004	10708004	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:10708004G>A	uc001aro.2	-	16	3671	c.3351C>T	c.(3349-3351)CTC>CTT	p.L1117L	CASZ1_uc001arp.1_Silent_p.L1117L	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	1117	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		GCTTCCAGGCGAGCAGGGTGG	0.687													12	50					0	0	0.000978	0	0
PTCHD2	57540	broad.mit.edu	37	1	11561654	11561654	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:11561654G>A	uc001ash.3	+	2	743	c.605G>A	c.(604-606)CGA>CAA	p.R202Q	PTCHD2_uc001asi.1_Missense_Mutation_p.R202Q	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	202	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CGGAGCGGGCGACTTCGGCGT	0.687													8	25					0	0	0.004482	0	0
MTHFR	4524	broad.mit.edu	37	1	11854540	11854540	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:11854540G>A	uc001atc.1	-	8	1406	c.1222C>T	c.(1222-1224)CTG>TTG	p.L408L	MTHFR_uc001atb.1_Silent_p.L431L	NM_005957	NP_005948	P42898	MTHR_HUMAN	5,10-methylenetetrahydrofolate reductase	408					blood circulation|folic acid metabolic process	cytosol	methylenetetrahydrofolate reductase (NADPH) activity|protein binding				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)	Benazepril(DB00542)|Cyanocobalamin(DB00115)|Folic Acid(DB00158)|L-Methionine(DB00134)|Menadione(DB00170)|Methotrexate(DB00563)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|Raltitrexed(DB00293)|Riboflavin(DB00140)|S-Adenosylmethionine(DB00118)|Tetrahydrofolic acid(DB00116)	TTGCTCTTCAGGTAGAAGAGG	0.567													20	80					0	0	0.001882	0	0
VPS13D	55187	broad.mit.edu	37	1	12374214	12374214	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:12374214C>T	uc001atv.2	+	30	7119	c.6978C>T	c.(6976-6978)TCC>TCT	p.S2326S	VPS13D_uc001atw.2_Silent_p.S2326S|VPS13D_uc001atx.2_Silent_p.S1514S|VPS13D_uc001aty.1_Silent_p.S64S	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	2326					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		AAAGTTTTTCCAACCAAACCA	0.403													5	24					0	0	0.000602	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12836148	12836148	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:12836148G>A	uc001aui.2	+	2	777	c.750G>A	c.(748-750)AGG>AGA	p.R250R		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	250										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CCCTAGACAGGAAGGAGCAGT	0.502													22	76					0	0	0.001882	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12855737	12855737	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:12855737C>T	uc001auj.1	+	4	1120	c.1017C>T	c.(1015-1017)CCC>CCT	p.P339P		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	339	LRR 1.										0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GTCTTGAACCCCTCGGAGCTC	0.532													35	187					0	0	0.008740	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12919684	12919684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:12919684G>A	uc001aum.1	+	3	511	c.424G>A	c.(424-426)GGA>AGA	p.G142R		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	142											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCCAAGGACGGGAGAGCACCA	0.542													42	204					0	0	0.007835	0	0
CLCNKA	1187	broad.mit.edu	37	1	16356460	16356460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:16356460G>A	uc001axu.2	+	14	1378	c.1298G>A	c.(1297-1299)GGA>GAA	p.G433E	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Missense_Mutation_p.G433E|CLCNKA_uc010obw.1_Missense_Mutation_p.G390E|CLCNKB_uc001axw.3_Intron|CLCNKA_uc010obx.1_Missense_Mutation_p.G80E|CLCNKA_uc010oby.1_Missense_Mutation_p.G169E	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	433	Helical; (Potential).				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	CTGTGGCCAGGAGCTGCCATC	0.642													12	59					0	0	0.001368	0	0
MST1P2	11209	broad.mit.edu	37	1	16974277	16974277	+	RNA	SNP	A	C	C	rs151151026	by1000genomes	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:16974277A>C	uc009vow.2	+	5		c.1087A>C			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_Splice_Site|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_Splice_Site|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_Splice_Site|MST1P2_uc001azm.3_Splice_Site					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						GGTCCATCTAAGGGTCCGAGG	0.657													3	24					0	0	0.004672	0	0
CROCC	9696	broad.mit.edu	37	1	17250864	17250864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:17250864G>A	uc001azt.2	+	3	310	c.241G>A	c.(241-243)GAG>AAG	p.E81K	CROCC_uc009voy.1_Intron|CROCC_uc009voz.1_Intron	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	81	Potential.				cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		GTCGCTGCAGGAGGAGAACCA	0.642													5	26					0	0	0.000602	0	0
UBR4	23352	broad.mit.edu	37	1	19426927	19426927	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:19426927G>A	uc001bbi.2	-	89	13168	c.13164C>T	c.(13162-13164)AAC>AAT	p.N4388N	UBR4_uc010ocv.1_5'Flank|UBR4_uc009vph.2_Silent_p.N22N|UBR4_uc010ocw.1_Silent_p.N79N|UBR4_uc001bbg.2_Silent_p.N99N|UBR4_uc001bbh.2_Silent_p.N97N	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	4388					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		GGCAAATCTTGTTCTTTATAT	0.527													26	101					0	0	0.004656	0	0
UBR4	23352	broad.mit.edu	37	1	19494556	19494556	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:19494556G>A	uc001bbi.2	-	28	3868	c.3864C>T	c.(3862-3864)CTC>CTT	p.L1288L	UBR4_uc001bbm.1_Silent_p.L499L	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	1288					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CCAGTGAGAGGAGGGTATGCT	0.498													22	106					0	0	0.002299	0	0
EIF4G3	8672	broad.mit.edu	37	1	21205977	21205977	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:21205977A>C	uc001bec.2	-	15	2549	c.2293T>G	c.(2293-2295)TTG>GTG	p.L765V	EIF4G3_uc010odi.1_Missense_Mutation_p.L369V|EIF4G3_uc010odj.1_Missense_Mutation_p.L764V|EIF4G3_uc009vpz.2_Missense_Mutation_p.L485V|EIF4G3_uc001bed.2_Missense_Mutation_p.L765V|EIF4G3_uc001bef.2_Missense_Mutation_p.L801V|EIF4G3_uc001bee.2_Missense_Mutation_p.L771V	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	765	eIF3/EIF4A-binding (By similarity).|MIF4G.|HEAT 1.				interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		TGTGGTGTCAATTTATTTAAG	0.383													42	171					0	0	0.008740	0	0
MAN1C1	57134	broad.mit.edu	37	1	26085122	26085122	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:26085122C>T	uc001bkm.2	+	6	1299	c.969C>T	c.(967-969)ATC>ATT	p.I323I	MAN1C1_uc009vry.1_Silent_p.I143I	NM_020379	NP_065112	Q9NR34	MA1C1_HUMAN	mannosidase, alpha, class 1C, member 1	323	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(1)	1		Colorectal(325;3.78e-05)|Lung NSC(340;0.000181)|all_lung(284;0.000245)|Renal(390;0.000714)|Ovarian(437;0.00159)|Breast(348;0.0156)|Myeloproliferative disorder(586;0.0257)|all_neural(195;0.0515)|Esophageal squamous(538;0.232)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0574)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.15e-07)|COAD - Colon adenocarcinoma(152;4.31e-06)|STAD - Stomach adenocarcinoma(196;0.00125)|BRCA - Breast invasive adenocarcinoma(304;0.00141)|KIRC - Kidney renal clear cell carcinoma(1967;0.00146)|GBM - Glioblastoma multiforme(114;0.0149)|READ - Rectum adenocarcinoma(331;0.0803)		GCAGCAGCATCTTGGCGGAGT	0.592													10	40					0	0	0.008291	0	0
PAFAH2	5051	broad.mit.edu	37	1	26317280	26317280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:26317280G>A	uc001bld.3	-	2	208	c.28C>T	c.(28-30)CCA>TCA	p.P10S	PAFAH2_uc001ble.3_Missense_Mutation_p.P10S	NM_000437	NP_000428	Q99487	PAFA2_HUMAN	platelet-activating factor acetylhydrolase 2	10					lipid catabolic process	cytoplasm	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding			ovary(2)	2		Colorectal(325;3.47e-05)|Lung NSC(340;6.23e-05)|all_lung(284;9.48e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-25)|Colorectal(126;3.57e-08)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00155)|GBM - Glioblastoma multiforme(114;0.00717)|READ - Rectum adenocarcinoma(331;0.0649)		GTGACAGGTGGAAAGCCCACA	0.557													6	34					0	0	0.001168	0	0
SNHG12	85028	broad.mit.edu	37	1	28905116	28905116	+	RNA	SNP	A	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:28905116A>C	uc001bqk.2	-	6		c.673T>G			SNHG12_uc001bql.2_RNA|SNHG12_uc001bqm.2_RNA|SNHG12_uc001bqn.2_RNA|SNHG12_uc001bqo.2_RNA|SNHG12_uc001bqp.2_RNA	NR_024127				Homo sapiens PNAS-123 mRNA, complete cds.												0						ACACTGCATAATTTTTTGCAT	0.368													7	27					0	0	0.001984	0	0
SPOCD1	90853	broad.mit.edu	37	1	32256508	32256508	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:32256508C>T	uc001bts.1	-	16	3405	c.3347G>A	c.(3346-3348)GGC>GAC	p.G1116D	SPOCD1_uc001btr.1_3'UTR|SPOCD1_uc001btt.2_Missense_Mutation_p.G408D|SPOCD1_uc001btu.2_Missense_Mutation_p.G1103D|SPOCD1_uc001btv.2_Missense_Mutation_p.G596D	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	1116					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		CTGGCGCAAGCCTGGCTCTGG	0.652													4	10					0	0	0.000248	0	0
TMEM39B	55116	broad.mit.edu	37	1	32560427	32560427	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:32560427C>T	uc010ogv.1	+	7	1116	c.970C>T	c.(970-972)CTG>TTG	p.L324L	TMEM39B_uc010ogt.1_RNA|TMEM39B_uc010ogu.1_Silent_p.L197L|TMEM39B_uc001bue.3_Silent_p.L325L|TMEM39B_uc001buf.3_Silent_p.L125L|TMEM39B_uc010ogw.1_Silent_p.L125L	NM_018056	NP_060526	Q9GZU3	TM39B_HUMAN	transmembrane protein 39B	324	Helical; (Potential).					integral to membrane					0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				TGAACTCTTCCTGCTGGTGTC	0.582													17	80					0	0	0.007413	0	0
RBBP4	5928	broad.mit.edu	37	1	33138492	33138492	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:33138492T>C	uc001bvr.2	+	11	1361	c.1202T>C	c.(1201-1203)GTG>GCG	p.V401A	RBBP4_uc001bvs.2_Missense_Mutation_p.V400A|RBBP4_uc010ohj.1_Missense_Mutation_p.V149A|RBBP4_uc010ohk.1_Missense_Mutation_p.V366A	NM_005610	NP_005601	Q09028	RBBP4_HUMAN	retinoblastoma binding protein 4 isoform a	401	WD 6.				cell cycle|CenH3-containing nucleosome assembly at centromere|DNA replication|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|ESC/E(Z) complex|NuRD complex|NURF complex|Sin3 complex	histone binding|histone deacetylase binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)				ATCATGCAAGTGTGGCAAATG	0.348													4	23					0	0	0.000602	0	0
CSMD2	114784	broad.mit.edu	37	1	34080129	34080129	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:34080129C>T	uc001bxn.1	-	40	6017	c.5988G>A	c.(5986-5988)TGG>TGA	p.W1996*	CSMD2_uc001bxm.1_Nonsense_Mutation_p.W2036*|CSMD2_uc001bxo.1_Nonsense_Mutation_p.W909*	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1996	CUB 12.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GTGCTATTTTCCAGGAGCAGT	0.433													4	26					0	0	0.000248	0	0
CSMD2	114784	broad.mit.edu	37	1	34285407	34285407	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:34285407C>T	uc001bxn.1	-	9	1140	c.1111G>A	c.(1111-1113)GAG>AAG	p.E371K	CSMD2_uc001bxm.1_Missense_Mutation_p.E411K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	371	Extracellular (Potential).|Sushi 2.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TCATAGCCCTCGTTGCAGGTG	0.607													4	43					0	0	0.000602	0	0
GJA4	2701	broad.mit.edu	37	1	35260119	35260119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:35260119G>A	uc001bya.2	+	2	393	c.305G>A	c.(304-306)CGA>CAA	p.R102Q	GJA4_uc009vul.2_Missense_Mutation_p.R178Q|GJA4_uc009vum.1_Missense_Mutation_p.R102Q	NM_002060	NP_002051	P35212	CXA4_HUMAN	connexin 37	102	Cytoplasmic (Potential).				cell-cell junction assembly	integral to plasma membrane				central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				CTGTCTCGGCGAGAAGAGCGG	0.662													6	36					0	0	0.001984	0	0
DLGAP3	58512	broad.mit.edu	37	1	35334316	35334316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:35334316G>A	uc001byc.2	-	7	2375	c.2375C>T	c.(2374-2376)CCA>CTA	p.P792L		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	792					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				GCCGTCGCGTGGGCAGGGGGA	0.587													12	26					0	0	0.001368	0	0
KIAA0319L	79932	broad.mit.edu	37	1	35926016	35926016	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:35926016G>A	uc001byx.2	-	9	1575	c.1317C>T	c.(1315-1317)ATC>ATT	p.I439I	KIAA0319L_uc010ohv.1_Silent_p.I81I|KIAA0319L_uc010ohw.1_RNA	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	439	PKD 2.|Extracellular (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GGTACTGAACGATTTTATCAT	0.393													15	78					0	0	0.003163	0	0
EIF2C4	192670	broad.mit.edu	37	1	36299718	36299718	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:36299718A>G	uc001bzj.1	+	12	1697	c.1507A>G	c.(1507-1509)ACT>GCT	p.T503A		NM_017629	NP_060099	Q9HCK5	AGO4_HUMAN	eukaryotic translation initiation factor 2C, 4	503					mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TCTGAAAATGACTTATGTGGG	0.453													5	44					0	0	0.001168	0	0
MACF1	23499	broad.mit.edu	37	1	39824860	39824860	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:39824860C>T	uc010oiu.1	+	11	7619	c.7488C>T	c.(7486-7488)CTC>CTT	p.L2496L	MACF1_uc010ois.1_Silent_p.L1994L|MACF1_uc001cda.1_Silent_p.L1902L|MACF1_uc001cdc.1_Silent_p.L1081L|MACF1_uc001cdb.1_Silent_p.L1081L	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	4061	Spectrin 2.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TGGAAAAACTCCAAAAAGTAG	0.408													11	35					0	0	0.001368	0	0
RLF	6018	broad.mit.edu	37	1	40705609	40705609	+	Silent	SNP	C	T	T	rs138324360	byFrequency	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:40705609C>T	uc001cfc.3	+	8	5266	c.5235C>T	c.(5233-5235)GTC>GTT	p.V1745V	RLF_uc001cfd.3_Silent_p.V1436V	NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	1745					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			CAACCCATGTCCCAAAAGAGA	0.378													9	31					0	0	0.004482	0	0
RIMKLA	284716	broad.mit.edu	37	1	42865133	42865133	+	Silent	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:42865133A>G	uc001chi.2	+	2	360	c.222A>G	c.(220-222)GTA>GTG	p.V74V		NM_173642	NP_775913	Q8IXN7	RIMKA_HUMAN	ribosomal modification protein rimK-like family	74					protein modification process	cytoplasm	acid-amino acid ligase activity|ATP binding|metal ion binding				0						TTGTACGGGTACCCACACCCT	0.552													6	21					0	0	0.001168	0	0
CDC20	991	broad.mit.edu	37	1	43825482	43825482	+	Silent	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:43825482T>C	uc001cix.2	+	4	518	c.417T>C	c.(415-417)AAT>AAC	p.N139N	CDC20_uc001ciy.2_Silent_p.N139N	NM_001255	NP_001246	Q12834	CDC20_HUMAN	cell division cycle 20	139					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of synapse maturation|positive regulation of synaptic plasticity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	cytosol|nucleoplasm|spindle	enzyme binding|protein C-terminus binding				0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				AACCACAAAATGCGCCAGAGG	0.502													21	113					0	0	0.008871	0	0
PTPRF	5792	broad.mit.edu	37	1	44087635	44087635	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:44087635C>T	uc001cjr.2	+	34	6025	c.5685C>T	c.(5683-5685)GCC>GCT	p.A1895A	PTPRF_uc001cjs.2_Silent_p.A1886A|PTPRF_uc001cju.2_Silent_p.A1284A|PTPRF_uc009vwt.2_Silent_p.A1455A|PTPRF_uc001cjv.2_Silent_p.A1366A|PTPRF_uc001cjw.2_Silent_p.A1121A	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1895	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				ACCGTGCGGCCCTGGAGTACC	0.652													16	59					0	0	0.003163	0	0
DMBX1	127343	broad.mit.edu	37	1	46978105	46978105	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:46978105A>C	uc001cpx.2	+	4	1103	c.1088A>C	c.(1087-1089)AAC>ACC	p.N363T	DMBX1_uc001cpw.2_Missense_Mutation_p.N358T	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	363	OAR.				brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					AGCATCGAGAACCTGCGGCTC	0.642													13	69					0	0	0.001855	0	0
CYP4B1	1580	broad.mit.edu	37	1	47284435	47284435	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:47284435G>A	uc001cqm.3	+	12	1569	c.1485G>A	c.(1483-1485)AAG>AAA	p.K495K	CYP4B1_uc001cqn.3_Silent_p.K496K|CYP4B1_uc009vym.2_Silent_p.K481K|CYP4B1_uc010omk.1_Silent_p.K332K	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	495					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					TGCGCTCCAAGAATGGCTTTC	0.592													25	80					0	0	0.003954	0	0
C1orf175	374977	broad.mit.edu	37	1	55144997	55144997	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:55144997G>A	uc010ooe.1	+	12	2435	c.2111G>A	c.(2110-2112)GGG>GAG	p.G704E	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Missense_Mutation_p.G272E|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.G222E|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.G704E|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	704						integral to membrane	binding				0						GCCCTGGAAGGGCTGAAAGGC	0.592													20	92					0	0	0.007413	0	0
C1orf168	199920	broad.mit.edu	37	1	57257937	57257937	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:57257937C>T	uc001cym.3	-	2	955	c.549G>A	c.(547-549)AGG>AGA	p.R183R	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Silent_p.R183R	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	183										ovary(3)|skin(2)	5						CCAGCTTTTTCCTGGGTTCCT	0.478													13	90					0	0	0.001368	0	0
LRRC7	57554	broad.mit.edu	37	1	70225938	70225938	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:70225938C>T	uc001dep.2	+	1	81	c.51C>T	c.(49-51)TTC>TTT	p.F17F	LRRC7_uc001deo.1_Silent_p.F55F|LRRC7_uc009wbg.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	17						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						GCCGATGTTTCCGAGGTGAAG	0.448													9	25					0	0	0.006214	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74507419	74507419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:74507419C>T	uc001dfy.3	-	7	1388	c.1196G>A	c.(1195-1197)CGA>CAA	p.R399Q	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	399										ovary(2)	2						CCGCTCCAATCGTATGTCTTT	0.343													17	53					0	0	0.004990	0	0
C1orf173	127254	broad.mit.edu	37	1	75039065	75039065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:75039065C>T	uc001dgg.2	-	14	2548	c.2329G>A	c.(2329-2331)GAA>AAA	p.E777K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	777	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GCTTCATCTTCCTCCATTGCT	0.488													16	94					0	0	0.004990	0	0
PIGK	10026	broad.mit.edu	37	1	77635030	77635030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:77635030G>A	uc001dhk.2	-	4	335	c.290C>T	c.(289-291)CCC>CTC	p.P97L	PIGK_uc010orj.1_Intron|PIGK_uc009wbx.2_Intron|PIGK_uc001dhl.1_Missense_Mutation_p.P97L	NM_005482	NP_005473	Q92643	GPI8_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	97	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|protein thiol-disulfide exchange|proteolysis	GPI-anchor transamidase complex	cysteine-type endopeptidase activity|GPI-anchor transamidase activity|protein binding			ovary(2)|pancreas(1)	3						AGCTGGTTTGGGATTTCTAGG	0.333													12	48					0	0	0.001368	0	0
COL24A1	255631	broad.mit.edu	37	1	86289269	86289269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:86289269C>T	uc001dlj.2	-	45	3781	c.3739G>A	c.(3739-3741)GAA>AAA	p.E1247K	COL24A1_uc001dli.2_Missense_Mutation_p.E383K|COL24A1_uc010osd.1_Missense_Mutation_p.E547K|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1247	Collagen-like 13.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		TCACCTGGTTCGCCCTTTAGT	0.313													11	54					0	0	0.001368	0	0
AGL	178	broad.mit.edu	37	1	100316674	100316674	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:100316674G>A	uc001dsi.1	+	2	476	c.76G>A	c.(76-78)GAA>AAA	p.E26K	AGL_uc001dsj.1_Missense_Mutation_p.E26K|AGL_uc001dsk.1_Missense_Mutation_p.E26K|AGL_uc001dsl.1_Missense_Mutation_p.E26K|AGL_uc001dsm.1_5'UTR	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	26	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		CTTCAGACTTGAACAAGGTCA	0.348													11	51					0	0	0.001855	0	0
C1orf194	127003	broad.mit.edu	37	1	109650610	109650610	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:109650610C>T	uc009wev.2	-	2	199	c.131G>A	c.(130-132)TGG>TAG	p.W44*	C1orf194_uc001dwp.3_Intron|C1orf194_uc009wew.2_Nonsense_Mutation_p.W32*	NM_001122961	NP_001116433	Q5T5A4	CA194_HUMAN	hypothetical protein LOC127003	44										ovary(1)	1						GAGCCGACTCCAGGGTTCCTG	0.473													34	141					0	0	0.003755	0	0
CELSR2	1952	broad.mit.edu	37	1	109795360	109795360	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:109795360T>C	uc001dxa.3	+	1	2720	c.2659T>C	c.(2659-2661)TAT>CAT	p.Y887H		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	887	Extracellular (Potential).|Cadherin 7.				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		CGTGGCCCAGTATGTCTTGCG	0.562													116	374					0	0	0.003610	0	0
CELSR2	1952	broad.mit.edu	37	1	109815912	109815912	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:109815912G>A	uc001dxa.3	+	32	8524	c.8463G>A	c.(8461-8463)GAG>GAA	p.E2821E		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	2821	Cytoplasmic (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		TGTCTCGAGAGGGGTCCCTAG	0.647													43	210					0	0	0.008740	0	0
ST7L	54879	broad.mit.edu	37	1	113153605	113153605	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:113153605G>A	uc001ecd.2	-	3	614	c.309C>T	c.(307-309)TTC>TTT	p.F103F	ST7L_uc009wgh.2_RNA|ST7L_uc001ecc.2_5'UTR|ST7L_uc010owg.1_Silent_p.F103F|ST7L_uc010owh.1_Silent_p.F103F|ST7L_uc001ece.2_Silent_p.F103F|ST7L_uc001ecf.2_Silent_p.F86F|ST7L_uc001ecg.2_RNA|ST7L_uc010owi.1_Silent_p.F38F|ST7L_uc001ech.2_Silent_p.F86F|ST7L_uc001eci.2_Silent_p.F103F|ST7L_uc009wgi.1_RNA|ST7L_uc010owj.1_Silent_p.F86F	NM_017744	NP_060214	Q8TDW4	ST7L_HUMAN	suppression of tumorigenicity 7-like isoform 1	103					negative regulation of cell growth	integral to membrane	binding				0	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CATGCTTATGGAAGTACCACC	0.393													4	25					0	0	0.000248	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			34	103					0	0	0.002445	0	0
SYCP1	6847	broad.mit.edu	37	1	115527431	115527431	+	Missense_Mutation	SNP	G	A	A	rs147186440		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:115527431G>A	uc001efr.2	+	30	2854	c.2645G>A	c.(2644-2646)AGA>AAA	p.R882K	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.R882K|SYCP1_uc009wgw.2_Missense_Mutation_p.R857K	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	882	Nuclear localization signal (Potential).				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAAAAAAAGAGAAAAATGGCC	0.244													6	76					0	0	0.001168	0	0
HMGCS2	3158	broad.mit.edu	37	1	120293530	120293530	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:120293530C>T	uc001eid.2	-	9	1473	c.1422G>A	c.(1420-1422)GTG>GTA	p.V474V	HMGCS2_uc010oxj.1_Silent_p.V432V|HMGCS2_uc001eie.2_Silent_p.V382V	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	474					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		GGGAGAAATTCACTGTGGAAT	0.498													39	148					0	0	0.007835	0	0
HMGCS2	3158	broad.mit.edu	37	1	120298082	120298082	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:120298082G>A	uc001eid.2	-	6	1206	c.1155C>T	c.(1153-1155)TCC>TCT	p.S385S	HMGCS2_uc010oxj.1_Silent_p.S343S|HMGCS2_uc001eie.2_Silent_p.S293S	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	385					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		ACCCGTACAGGGATGAGGTGT	0.562													87	444					0	0	0.003610	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144946681	144946681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:144946681G>A	uc001elw.3	-	5	871	c.580C>T	c.(580-582)CGG>TGG	p.R194W	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.R260W|PDE4DIP_uc001emc.1_Missense_Mutation_p.R194W|PDE4DIP_uc001emd.1_Missense_Mutation_p.R194W	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	194	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TGTTTCTCCCGAGATAGCTGT	0.453			T	PDGFRB	MPD								14	64					0	0	0.003163	0	0
SV2A	9900	broad.mit.edu	37	1	149880812	149880812	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:149880812G>A	uc001etg.2	-	8	1802	c.1311C>T	c.(1309-1311)TCC>TCT	p.S437S	SV2A_uc009wlk.2_5'Flank|SV2A_uc001eth.2_Silent_p.S437S	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	437	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	GACCAAAACAGGAGAGAAAAT	0.512													12	69					0	0	0.001368	0	0
POGZ	23126	broad.mit.edu	37	1	151378399	151378399	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:151378399G>A	uc001eyd.1	-	19	3418	c.3112C>T	c.(3112-3114)CAG>TAG	p.Q1038*	POGZ_uc001eye.1_Nonsense_Mutation_p.Q985*|POGZ_uc010pdb.1_Nonsense_Mutation_p.Q1029*|POGZ_uc001eyf.1_Nonsense_Mutation_p.Q994*|POGZ_uc010pdc.1_Nonsense_Mutation_p.Q976*|POGZ_uc009wmv.1_Nonsense_Mutation_p.Q943*|POGZ_uc010pdd.1_Nonsense_Mutation_p.Q529*	NM_015100	NP_055915	Q7Z3K3	POGZ_HUMAN	pogo transposable element with ZNF domain	1038	HTH CENPB-type.				cell division|kinetochore assembly|mitotic sister chromatid cohesion|regulation of transcription, DNA-dependent	cytoplasm|nuclear chromatin	DNA binding|protein binding|zinc ion binding			ovary(3)	3	Lung SC(34;0.00471)|Ovarian(49;0.00672)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TGTTCGCGCTGGGTTAGCACC	0.517													16	99					0	0	0.006122	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059449	152059449	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:152059449C>T	uc001ezo.1	-	3	774	c.709G>A	c.(709-711)GAA>AAA	p.E237K		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	237							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CTGGCTGGTTCATCTCCTTCC	0.463													16	84					0	0	0.004007	0	0
KCNN3	3782	broad.mit.edu	37	1	154685954	154685954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:154685954C>T	uc001ffp.2	-	7	2199	c.1885G>A	c.(1885-1887)GTG>ATG	p.V629M	KCNN3_uc001ffo.2_Missense_Mutation_p.V324M	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	634	Calmodulin-binding (By similarity).					integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			GAAAGGTCCACCAGAGTGTTG	0.547													11	54					0	0	0.001368	0	0
TRIM46	80128	broad.mit.edu	37	1	155156563	155156563	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:155156563C>T	uc001fhs.1	+	10	2260	c.2177C>T	c.(2176-2178)CCT>CTT	p.P726L	RAG1AP1_uc010pey.1_Intron|TRIM46_uc001fht.1_RNA|TRIM46_uc010pfa.1_Missense_Mutation_p.P600L|TRIM46_uc001fhu.1_Missense_Mutation_p.P703L|TRIM46_uc001fhw.1_RNA	NM_025058	NP_079334	Q7Z4K8	TRI46_HUMAN	tripartite motif-containing 46	726	B30.2/SPRY.					intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;6.62e-10)|all cancers(21;2.68e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CCTGTGTGCCCTGCCTTTTGC	0.617													4	35					0	0	0.000248	0	0
INSRR	3645	broad.mit.edu	37	1	156821960	156821960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:156821960C>T	uc010pht.1	-	3	915	c.661G>A	c.(661-663)GCT>ACT	p.A221T	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|INSRR_uc009wsj.1_Missense_Mutation_p.A221T	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	221					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GCTGTGCAAGCCATCCCATGG	0.647													7	39					0	0	0.003080	0	0
OR10J3	441911	broad.mit.edu	37	1	159284091	159284091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:159284091C>T	uc010piu.1	-	1	359	c.359G>A	c.(358-360)GGA>GAA	p.G120E		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	120	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					GCGGTCATATCCCATGACTGT	0.517													20	57					0	0	0.001523	0	0
OR10J1	26476	broad.mit.edu	37	1	159409881	159409881	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:159409881G>A	uc010piv.1	+	1	333	c.333G>A	c.(331-333)CAG>CAA	p.Q111Q	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	111	Helical; Name=3; (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					GTGCCACACAGATGTTCTTTT	0.488													8	47					0	0	0.004482	0	0
KCNJ10	3766	broad.mit.edu	37	1	160012148	160012148	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:160012148A>G	uc001fuw.1	-	2	325	c.175T>C	c.(175-177)TTC>CTC	p.F59L		NM_002241	NP_002232	P78508	IRK10_HUMAN	potassium inwardly-rectifying channel, subfamily	59	Cytoplasmic (By similarity).					integral to plasma membrane	ATP binding|ATP-activated inward rectifier potassium channel activity			ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			ATGTCAATGAAGGTTGTCCAC	0.547													24	115					0	0	0.003954	0	0
PVRL4	81607	broad.mit.edu	37	1	161043552	161043552	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:161043552G>A	uc001fxo.2	-	7	1490	c.1191C>T	c.(1189-1191)TCC>TCT	p.S397S	PVRL4_uc010pjy.1_Silent_p.S76S|PVRL4_uc010pjz.1_Silent_p.S131S	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	397	Cytoplasmic (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			GCCTCCGGATGGAGTTCTCCC	0.607													13	51					0	0	0.004007	0	0
ADAMTS4	9507	broad.mit.edu	37	1	161166389	161166389	+	Silent	SNP	C	T	T	rs150760814		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:161166389C>T	uc001fyt.3	-	2	1343	c.915G>A	c.(913-915)TCG>TCA	p.S305S	ADAMTS4_uc001fyu.2_Silent_p.S305S|NDUFS2_uc001fyv.2_5'Flank	NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	305	Peptidase M12B.				proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GGTCAGGGTCCGAGTCCTCAG	0.537													10	72					0	0	0.001368	0	0
LRRC52	440699	broad.mit.edu	37	1	165513753	165513753	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:165513753G>A	uc001gde.2	+	1	276	c.220G>A	c.(220-222)GGA>AGA	p.G74R	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	74	LRR 1.|Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					AATGCATCTAGGACTCCTCAG	0.478													28	164					0	0	0.007291	0	0
F5	2153	broad.mit.edu	37	1	169510174	169510174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:169510174G>A	uc001ggg.1	-	13	4299	c.4154C>T	c.(4153-4155)TCC>TTC	p.S1385F		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1385	2-23.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	GAGGTCTGGGGAAAGGTTTGT	0.527													33	131					0	0	0.002445	0	0
BAT2L2	23215	broad.mit.edu	37	1	171544202	171544202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:171544202C>T	uc010pmg.1	+	25	7150	c.6884C>T	c.(6883-6885)TCG>TTG	p.S2295L	BAT2L2_uc010pmh.1_Missense_Mutation_p.S1207L|BAT2L2_uc010pmi.1_Missense_Mutation_p.S132L	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	2295							protein C-terminus binding				0						AATTACAATTCGTTCTCAAGT	0.443													5	24					0	0	0.000602	0	0
DNM3	26052	broad.mit.edu	37	1	172007500	172007500	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:172007500G>A	uc001gie.2	+	7	1067	c.891G>A	c.(889-891)AGG>AGA	p.R297R	DNM3_uc001gid.3_Silent_p.R297R|DNM3_uc009wwb.2_Silent_p.R297R|DNM3_uc001gif.2_Silent_p.R297R	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	297					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						CAAACTTCAGGAACAAACTAC	0.388													10	65					0	0	0.006214	0	0
TNFSF18	8995	broad.mit.edu	37	1	173010837	173010837	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:173010837T>A	uc001giu.2	-	3	271	c.270A>T	c.(268-270)AAA>AAT	p.K90N		NM_005092	NP_005083	Q9UNG2	TNF18_HUMAN	tumor necrosis factor (ligand) superfamily,	90	Extracellular (Potential).				anti-apoptosis|cell-cell signaling|immune response|signal transduction	extracellular space|integral to membrane	cytokine activity|tumor necrosis factor receptor binding			central_nervous_system(1)	1						CCATTTGCCATTTTGAGGGTA	0.343													27	127					0	0	0.001786	0	0
TNFSF4	7292	broad.mit.edu	37	1	173155672	173155672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:173155672C>T	uc001giw.2	-	3	691	c.535G>A	c.(535-537)GAA>AAA	p.E179K	TNFSF4_uc001giv.2_Missense_Mutation_p.E129K	NM_003326	NP_003317	P23510	TNFL4_HUMAN	tumor necrosis factor (ligand) superfamily,	179	Extracellular (Potential).				acute inflammatory response|cellular response to lipopolysaccharide|cellular response to prostaglandin E stimulus|chemokine (C-C motif) ligand 11 production|defense response to nematode|interleukin-4-dependent isotype switching to IgE isotypes|memory T cell activation|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of regulatory T cell differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of T-helper 1 cell differentiation|negative regulation of transcription, DNA-dependent|positive regulation of alpha-beta T cell proliferation|positive regulation of B cell activation|positive regulation of immunoglobulin mediated immune response|positive regulation of immunoglobulin secretion|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-13 production|positive regulation of interleukin-4 production|positive regulation of interleukin-6 production|positive regulation of memory T cell differentiation|positive regulation of T cell cytokine production|positive regulation of T-helper 2 cell differentiation|positive regulation of type 2 immune response|response to virus|signal transduction|T-helper 2 cell activation	cell surface|extracellular space|integral to plasma membrane	cytokine activity			central_nervous_system(1)	1						ACACAGAATTCACCAGGATTT	0.468													8	48					0	0	0.004482	0	0
TNN	63923	broad.mit.edu	37	1	175116171	175116171	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:175116171G>A	uc001gkl.1	+	19	3977	c.3864G>A	c.(3862-3864)AAG>AAA	p.K1288K		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1288					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		TGGGCAGAAAGAAGCGGACGC	0.587											OREG0013992	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	29					0	0	0.000248	0	0
TNR	7143	broad.mit.edu	37	1	175332868	175332868	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:175332868G>A	uc001gkp.1	-	11	2764	c.2683C>T	c.(2683-2685)CGA>TGA	p.R895*	TNR_uc009wwu.1_Nonsense_Mutation_p.R895*	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	895	Fibronectin type-III 7.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TATGATACTCGGTAGTAATCG	0.438													9	52					0	0	0.006214	0	0
ASTN1	460	broad.mit.edu	37	1	176838078	176838078	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:176838078C>T	uc001glc.2	-	22	3761	c.3549G>A	c.(3547-3549)CTG>CTA	p.L1183L	ASTN1_uc001glb.1_Silent_p.L1183L|ASTN1_uc001gld.1_Silent_p.L1183L	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1191					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						TGGGGGAACCCAGATCCAGGA	0.512													19	67					0	0	0.001523	0	0
SOAT1	6646	broad.mit.edu	37	1	179304712	179304712	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:179304712G>A	uc001gml.2	+	4	312	c.249G>A	c.(247-249)AAG>AAA	p.K83K	SOAT1_uc010pni.1_Silent_p.K18K|SOAT1_uc001gmm.2_Silent_p.K25K|SOAT1_uc010pnj.1_5'UTR|SOAT1_uc010pnk.1_Silent_p.K18K	NM_003101	NP_003092	P35610	SOAT1_HUMAN	sterol O-acyltransferase 1	83					cholesterol efflux|cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|cholesterol storage|macrophage derived foam cell differentiation|positive regulation of amyloid precursor protein biosynthetic process|very-low-density lipoprotein particle assembly	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol binding|cholesterol O-acyltransferase activity|fatty-acyl-CoA binding			central_nervous_system(1)|skin(1)	2					Ezetimibe(DB00973)|Hesperetin(DB01094)	TCATTGAAAAGTCAGCATCAT	0.358													9	56					0	0	0.004482	0	0
CACNA1E	777	broad.mit.edu	37	1	181745324	181745324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:181745324G>A	uc001gow.2	+	38	5392	c.5227G>A	c.(5227-5229)GAG>AAG	p.E1743K	CACNA1E_uc009wxs.2_Missense_Mutation_p.E1631K|CACNA1E_uc001gox.1_Missense_Mutation_p.E969K|CACNA1E_uc009wxt.2_Missense_Mutation_p.E969K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1743	EF-hand.|Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCACTTGGACGAGTTTGTCCG	0.607													23	107					0	0	0.002299	0	0
CFHR5	81494	broad.mit.edu	37	1	196965275	196965275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:196965275G>A	uc001gts.3	+	6	1042	c.914G>A	c.(913-915)GGA>GAA	p.G305E		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	305	Sushi 5.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						GCAATGATTGGAAATAACATG	0.363													11	60					0	0	0.001368	0	0
CRB1	23418	broad.mit.edu	37	1	197390734	197390734	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:197390734C>T	uc001gtz.2	+	6	1911	c.1776C>T	c.(1774-1776)ATC>ATT	p.I592I	CRB1_uc010poz.1_Silent_p.I523I|CRB1_uc010ppa.1_Intron|CRB1_uc009wza.2_Silent_p.I480I|CRB1_uc010ppb.1_Silent_p.I592I|CRB1_uc010ppc.1_Intron|CRB1_uc010ppd.1_Silent_p.I73I|CRB1_uc001gub.1_Silent_p.I241I	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	592	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						AGAAATGCATCGCGAAAGCTC	0.468													18	62					0	0	0.007413	0	0
CRB1	23418	broad.mit.edu	37	1	197396670	197396670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:197396670C>T	uc001gtz.2	+	7	2350	c.2215C>T	c.(2215-2217)CTC>TTC	p.L739F	CRB1_uc010poz.1_Missense_Mutation_p.L670F|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.L627F|CRB1_uc010ppb.1_Intron|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.L220F|CRB1_uc001gub.1_Missense_Mutation_p.L388F	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	739	Extracellular (Potential).|Laminin G-like 2.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CACCATCAGCCTCTCCATGTT	0.463													8	38					0	0	0.003080	0	0
NR5A2	2494	broad.mit.edu	37	1	200017919	200017919	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:200017919G>A	uc001gvb.2	+	5	1289	c.1083G>A	c.(1081-1083)AGG>AGA	p.R361R	NR5A2_uc001gvc.2_Silent_p.R315R|NR5A2_uc009wzh.2_Silent_p.R321R|NR5A2_uc010pph.1_Silent_p.R289R	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	361	Ligand-binding.				embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					AGTGGGCCAGGAGTAGTATCT	0.433													26	99					0	0	0.002096	0	0
RNPEP	6051	broad.mit.edu	37	1	201966479	201966479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:201966479C>T	uc001gxd.2	+	5	916	c.887C>T	c.(886-888)CCA>CTA	p.P296L	RNPEP_uc001gxe.2_5'UTR|RNPEP_uc001gxf.2_Missense_Mutation_p.P165L	NM_020216	NP_064601	Q9H4A4	AMPB_HUMAN	arginyl aminopeptidase	296					leukotriene biosynthetic process		epoxide hydrolase activity|zinc ion binding			upper_aerodigestive_tract(1)	1				KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|Colorectal(1306;0.005)		CCGTCCTTTCCATTTGGAGGA	0.587													15	93					0	0	0.006122	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204226886	204226886	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:204226886G>A	uc001hau.2	-	9	1436	c.1119C>T	c.(1117-1119)AGC>AGT	p.S373S	PLEKHA6_uc009xaw.1_5'UTR|PLEKHA6_uc009xax.1_5'UTR|PLEKHA6_uc009xay.1_5'UTR|PLEKHA6_uc009xaz.1_5'UTR|PLEKHA6_uc009xba.1_5'UTR|PLEKHA6_uc009xbb.1_5'UTR|PLEKHA6_uc009xbc.1_5'UTR	NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	373	Pro-rich.									ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			TGGAACAGATGCTCTCCGGCC	0.627													7	24					0	0	0.001984	0	0
CDK18	5129	broad.mit.edu	37	1	205494284	205494284	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:205494284G>A	uc001hcr.2	+	5	726	c.507G>A	c.(505-507)GGG>GGA	p.G169G	CDK18_uc010pri.1_Missense_Mutation_p.E160K|CDK18_uc001hcp.2_Silent_p.G139G|CDK18_uc001hcq.2_Silent_p.G139G|CDK18_uc010prj.1_Silent_p.G50G|CDK18_uc001hcs.2_Silent_p.G50G|CDK18_uc009xbm.1_Silent_p.G50G	NM_212503	NP_997668	Q07002	CDK18_HUMAN	PCTAIRE protein kinase 3 isoform a	137							ATP binding|cyclin-dependent protein kinase activity|protein binding|signal transducer activity			stomach(2)	2						TTGGCTTTGGGAAACTGGAAA	0.547													7	30					0	0	0.004482	0	0
CD55	1604	broad.mit.edu	37	1	207499049	207499049	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:207499049C>T	uc001hfq.3	+	4	855	c.561C>T	c.(559-561)TCC>TCT	p.S187S	CD55_uc001hfp.3_Silent_p.S187S|CD55_uc001hfr.3_Silent_p.S187S|CD55_uc010psf.1_RNA|CD55_uc009xcf.2_Silent_p.S123S|CD55_uc009xce.2_Silent_p.S187S|CD55_uc009xcg.2_5'UTR	NM_000574	NP_000565	P08174	DAF_HUMAN	decay accelerating factor for complement isoform	187	Sushi 3.			S -> T (in Ref. 9; AAB48622).	complement activation, classical pathway|elevation of cytosolic calcium ion concentration|innate immune response|respiratory burst	anchored to membrane|extracellular region|integral to plasma membrane|membrane raft|soluble fraction	receptor activity			ovary(1)	1					Chloramphenicol(DB00446)	CAACCATCTCCTTCTCATGTA	0.373													10	41					0	0	0.000978	0	0
CR1	1378	broad.mit.edu	37	1	207753681	207753681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:207753681C>T	uc001hfy.2	+	22	3823	c.3683C>T	c.(3682-3684)CCT>CTT	p.P1228L	CR1_uc009xcl.1_Missense_Mutation_p.P778L|CR1_uc001hfx.2_Missense_Mutation_p.P1678L	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1228	Extracellular (Potential).|Sushi 19.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						AGCTGTGAGCCTGGCTATGAC	0.582													29	107					0	0	0.008361	0	0
TRAF5	7188	broad.mit.edu	37	1	211545679	211545679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:211545679C>T	uc001hih.2	+	11	1369	c.1309C>T	c.(1309-1311)CGC>TGC	p.R437C	TRAF5_uc001hii.2_Missense_Mutation_p.R437C|TRAF5_uc010psx.1_Missense_Mutation_p.R448C|TRAF5_uc010psy.1_Missense_Mutation_p.R331C|TRAF5_uc001hij.2_Missense_Mutation_p.R437C	NM_004619	NP_004610	O00463	TRAF5_HUMAN	TNF receptor-associated factor 5	437	MATH.				apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis	CD40 receptor complex|centrosome|internal side of plasma membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)|breast(2)|ovary(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00946)|all cancers(67;0.0808)|Epithelial(68;0.144)		CTACACCAGCCGCTGTGGCTA	0.537													43	75					0	0	0.008740	0	0
USH2A	7399	broad.mit.edu	37	1	215987180	215987180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:215987180G>A	uc001hku.1	-	49	10024	c.9637C>T	c.(9637-9639)CCG>TCG	p.P3213S		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3213	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AGAACAAACGGGATATACTTT	0.418										HNSCC(13;0.011)			10	38					0	0	0.006214	0	0
KIAA1383	54627	broad.mit.edu	37	1	232940933	232940933	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:232940933C>T	uc001hvh.2	+	1	296	c.164C>T	c.(163-165)CCA>CTA	p.P55L		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	Error:Variant_position_missing_in_Q9P2G4_after_alignment										ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				TGTCTTTTACCACTTATATCC	0.378													35	148					0	0	0.006230	0	0
SLC35F3	148641	broad.mit.edu	37	1	234454657	234454657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:234454657G>A	uc001hwa.1	+	5	1136	c.908G>A	c.(907-909)GGA>GAA	p.G303E	SLC35F3_uc001hvy.1_Missense_Mutation_p.G372E	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	303					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			ATTCCATGGGGAAACCTTTGT	0.423													11	123					0	0	0.008291	0	0
OR2G3	81469	broad.mit.edu	37	1	247769773	247769773	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:247769773G>A	uc010pyz.1	+	1	886	c.886G>A	c.(886-888)GAT>AAT	p.D296N		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			AAGGAACAAGGATATGAAAGA	0.418													13	63					0	0	0.001855	0	0
ADARB2	105	broad.mit.edu	37	10	1313167	1313167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:1313167C>T	uc009xhq.2	-	4	1549	c.1175G>A	c.(1174-1176)GGA>GAA	p.G392E		NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	392					mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		CATGACGATTCCTGCCAGCGC	0.532													5	21					0	0	0.003080	0	0
AKR1CL1	340811	broad.mit.edu	37	10	5204876	5204876	+	RNA	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:5204876G>A	uc009xhz.2	-	2		c.284C>T				NR_027916				Homo sapiens cDNA FLJ16347 fis, clone TESTI2036288, moderately similar to PROSTAGLANDIN-F SYNTHASE 1 (EC 1.1.1.188).												0						TCTCCCAAATGGCCTGTCCAA	0.478													19	113					0	0	0.001523	0	0
SFMBT2	57713	broad.mit.edu	37	10	7213004	7213004	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:7213004C>T	uc009xio.1	-	20	2521	c.2430G>A	c.(2428-2430)GAG>GAA	p.E810E	SFMBT2_uc001ijn.1_Silent_p.E810E|SFMBT2_uc010qay.1_Silent_p.E645E	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	810					regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						TCTCCTCCTCCTCCTGTTTCG	0.612													24	87					0	0	0.003954	0	0
ITIH2	3698	broad.mit.edu	37	10	7786863	7786863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:7786863G>A	uc001ijs.2	+	19	2680	c.2518G>A	c.(2518-2520)GAC>AAC	p.D840N		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	840					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						CGTCAATGTTGACTTTCTGGG	0.433													15	58					0	0	0.006122	0	0
PLXDC2	84898	broad.mit.edu	37	10	20290867	20290867	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:20290867C>T	uc001iqg.1	+	2	913	c.276C>T	c.(274-276)TTC>TTT	p.F92F	PLXDC2_uc001iqh.1_Silent_p.F92F	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	92	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						CCAGAAGCTTCACAGACCTGC	0.468													4	25					0	0	0.000248	0	0
MYO3A	53904	broad.mit.edu	37	10	26491913	26491913	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:26491913T>A	uc001isn.2	+	34	4967	c.4607T>A	c.(4606-4608)TTG>TAG	p.L1536*	MYO3A_uc009xkp.1_Intron|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1536					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						TTATTAGATTTGGAAGATTTC	0.343													4	23					0	0	0.000248	0	0
ARMC4	55130	broad.mit.edu	37	10	28149631	28149631	+	Missense_Mutation	SNP	C	T	T	rs146309511		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:28149631C>T	uc009xky.2	-	19	3042	c.2944G>A	c.(2944-2946)GCG>ACG	p.A982T	ARMC4_uc010qds.1_Missense_Mutation_p.A507T|ARMC4_uc010qdt.1_Missense_Mutation_p.A674T|ARMC4_uc001itz.2_Missense_Mutation_p.A982T	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	982	ARM 9.						binding			ovary(4)|skin(2)	6						TGAGCTGTCGCCCGATGCACG	0.498													22	70					0	0	0.002780	0	0
NRP1	8829	broad.mit.edu	37	10	33545362	33545362	+	Silent	SNP	T	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:33545362T>G	uc001iwx.3	-	5	1219	c.696A>C	c.(694-696)ACA>ACC	p.T232T	NRP1_uc001iwv.3_Silent_p.T232T|NRP1_uc009xlz.2_Silent_p.T232T|NRP1_uc001iww.3_Silent_p.T51T|NRP1_uc001iwy.3_Silent_p.T232T|NRP1_uc001iwz.2_Silent_p.T232T|NRP1_uc001ixa.2_Silent_p.T232T|NRP1_uc001ixb.1_Silent_p.T232T|NRP1_uc001ixc.1_Silent_p.T232T	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	232	Extracellular (Potential).|CUB 2.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	TTCGACCTGGTGTTTTCTGTC	0.473													5	38					0	0	0.001168	0	0
PARD3	56288	broad.mit.edu	37	10	34573160	34573160	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:34573160G>A	uc010qej.1	-	21	3088	c.3088C>T	c.(3088-3090)CGA>TGA	p.R1030*	PARD3_uc010qek.1_Nonsense_Mutation_p.R1027*|PARD3_uc010qel.1_Intron|PARD3_uc010qem.1_Nonsense_Mutation_p.R1014*|PARD3_uc010qen.1_Nonsense_Mutation_p.R984*|PARD3_uc010qeo.1_Intron|PARD3_uc010qep.1_Nonsense_Mutation_p.R940*|PARD3_uc010qeq.1_Intron	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	1030	Lys-rich.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				TCATCTTTTCGATGTTTGCCA	0.338													13	76					0	0	0.001368	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508193	37508193	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:37508193A>T	uc001iza.1	+	34	3484	c.3385A>T	c.(3385-3387)AAA>TAA	p.K1129*		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1185	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ATTGAAGGAAAAACAAGACAA	0.373													10	77					0	0	0.006214	0	0
ZNF239	8187	broad.mit.edu	37	10	44053482	44053482	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:44053482G>A	uc001jaw.3	-	2	699	c.46C>T	c.(46-48)CGA>TGA	p.R16*	ZNF239_uc001jax.3_Nonsense_Mutation_p.R16*|ZNF239_uc009xmj.2_Nonsense_Mutation_p.R16*|ZNF239_uc009xmk.2_Nonsense_Mutation_p.R16*	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	16					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						ACTTCCCCTCGATGATTCACA	0.463													7	38					0	0	0.001984	0	0
SGMS1	259230	broad.mit.edu	37	10	52103686	52103686	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:52103686C>T	uc001jje.2	-	7	1143	c.189G>A	c.(187-189)ATG>ATA	p.M63I	SGMS1_uc010qhk.1_Intron|SGMS1_uc009xot.1_Intron|SGMS1_uc009xou.1_Missense_Mutation_p.M63I|SGMS1_uc010qhl.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	69	SAM.				apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						GGGTTTCTATCATGTCCAGGA	0.532													10	60					0	0	0.000978	0	0
Unknown	0	broad.mit.edu	37	10	52390613	52390613	+	RNA	SNP	C	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:52390613C>G	uc001jjf.1	+	2		c.1306C>G								Homo sapiens cDNA FLJ12320 fis, clone MAMMA1002082.																		CATAGGGTGTCTGCTCAATTT	0.423													3	12					0	0	0.004672	0	0
PRKG1	5592	broad.mit.edu	37	10	54040660	54040660	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:54040660C>T	uc001jjm.2	+	13	1664	c.1470C>T	c.(1468-1470)CTC>CTT	p.L490L	PRKG1_uc001jjo.2_Silent_p.L505L|PRKG1_uc009xow.1_Silent_p.L208L|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	490	Protein kinase.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		CAGAAAATCTCATCCTAGATC	0.388													10	57					0	0	0.006214	0	0
PCDH15	65217	broad.mit.edu	37	10	55626446	55626446	+	Missense_Mutation	SNP	T	C	C	rs61731381	byFrequency	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:55626446T>C	uc001jju.1	-	27	4068	c.3673A>G	c.(3673-3675)ACT>GCT	p.T1225A	PCDH15_uc010qhq.1_Missense_Mutation_p.T1230A|PCDH15_uc010qhr.1_Missense_Mutation_p.T1225A|PCDH15_uc010qhs.1_Missense_Mutation_p.T1237A|PCDH15_uc010qht.1_Missense_Mutation_p.T1232A|PCDH15_uc010qhu.1_Missense_Mutation_p.T1225A|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.T1225A|PCDH15_uc010qhw.1_Missense_Mutation_p.T1188A|PCDH15_uc010qhx.1_Missense_Mutation_p.T1154A|PCDH15_uc010qhy.1_Missense_Mutation_p.T1230A|PCDH15_uc010qhz.1_Missense_Mutation_p.T1225A|PCDH15_uc010qia.1_Missense_Mutation_p.T1203A|PCDH15_uc010qib.1_Missense_Mutation_p.T1203A	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1225	Cadherin 11.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TAGTCGTCAGTTGCAATAACT	0.413										HNSCC(58;0.16)			10	33					0	0	0.006214	0	0
PCDH15	65217	broad.mit.edu	37	10	55698700	55698700	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:55698700T>A	uc001jju.1	-	25	3643	c.3248A>T	c.(3247-3249)AAT>ATT	p.N1083I	PCDH15_uc010qhq.1_Missense_Mutation_p.N1088I|PCDH15_uc010qhr.1_Missense_Mutation_p.N1083I|PCDH15_uc010qhs.1_Missense_Mutation_p.N1095I|PCDH15_uc010qht.1_Missense_Mutation_p.N1090I|PCDH15_uc010qhu.1_Missense_Mutation_p.N1083I|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.N1083I|PCDH15_uc010qhw.1_Missense_Mutation_p.N1046I|PCDH15_uc010qhx.1_Missense_Mutation_p.N1012I|PCDH15_uc010qhy.1_Missense_Mutation_p.N1088I|PCDH15_uc010qhz.1_Missense_Mutation_p.N1083I|PCDH15_uc010qia.1_Missense_Mutation_p.N1061I|PCDH15_uc010qib.1_Missense_Mutation_p.N1061I	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1083	Cadherin 10.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGTGATGTTATTAATTCCAAA	0.363										HNSCC(58;0.16)			5	54					0	0	0.001168	0	0
FAM13C	220965	broad.mit.edu	37	10	61014154	61014154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:61014154C>T	uc001jkn.2	-	12	1420	c.1286G>A	c.(1285-1287)AGA>AAA	p.R429K	FAM13C_uc001jko.2_Missense_Mutation_p.R331K|FAM13C_uc010qid.1_Missense_Mutation_p.R346K|FAM13C_uc010qie.1_Missense_Mutation_p.R346K|FAM13C_uc010qif.1_Missense_Mutation_p.R451K|FAM13C_uc001jkp.2_Missense_Mutation_p.R346K	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	429										ovary(2)	2						CTTGATAATTCTGTATCGGTC	0.353													28	95					0	0	0.002445	0	0
SLC16A9	220963	broad.mit.edu	37	10	61413501	61413501	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:61413501A>G	uc010qig.1	-	5	1732	c.1283T>C	c.(1282-1284)TTA>TCA	p.L428S		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	428	Extracellular (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						GGCATGGGCTAATTTTTCAAT	0.403													12	36					0	0	0.001368	0	0
ANK3	288	broad.mit.edu	37	10	61834088	61834088	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:61834088G>A	uc001jky.2	-	37	6743	c.6551C>T	c.(6550-6552)CCC>CTC	p.P2184L	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2184					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTGGGTCTGGGGAACATCCCC	0.448													20	108					0	0	0.007413	0	0
ANK3	288	broad.mit.edu	37	10	61840357	61840357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:61840357C>T	uc001jky.2	-	36	4562	c.4370G>A	c.(4369-4371)CGA>CAA	p.R1457Q	ANK3_uc001jkw.2_Missense_Mutation_p.R582Q|ANK3_uc009xpa.2_Missense_Mutation_p.R582Q|ANK3_uc001jkx.2_Missense_Mutation_p.R626Q|ANK3_uc010qih.1_Missense_Mutation_p.R1449Q|ANK3_uc001jkz.3_Missense_Mutation_p.R1442Q|ANK3_uc001jla.1_Missense_Mutation_p.R514Q|ANK3_uc001jkv.2_5'UTR|ANK3_uc009xpb.1_RNA|ANK3_uc009xpc.1_RNA	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1457					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GAAGCTCTGTCGTCTATCTGT	0.388													6	29					0	0	0.001168	0	0
ANK3	288	broad.mit.edu	37	10	61959955	61959955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:61959955G>A	uc001jky.2	-	13	1615	c.1423C>T	c.(1423-1425)CGC>TGC	p.R475C	ANK3_uc010qih.1_Missense_Mutation_p.R458C|ANK3_uc001jkz.3_Missense_Mutation_p.R469C|ANK3_uc001jlb.1_Missense_Mutation_p.R4C|ANK3_uc001jlc.1_Missense_Mutation_p.R136C	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	475	ANK 13.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGGCCGGAGCGAGCTGCCATG	0.453													5	34					0	0	0.001168	0	0
ANXA2P3	305	broad.mit.edu	37	10	66585709	66585709	+	RNA	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:66585709C>T	uc009xpm.1	+	1		c.425C>T				NR_001446				Human lipocortin (LIP) 2 pseudogene mRNA, complete cds-like region.												0						GGAGGACTCCCTCGTTGAGAT	0.458													3	18					0	0	0.004672	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72492039	72492039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:72492039C>T	uc001jrh.2	+	7	1132	c.1132C>T	c.(1132-1134)CCC>TCC	p.P378S	ADAMTS14_uc001jrg.2_Missense_Mutation_p.P381S|ADAMTS14_uc001jri.1_5'Flank	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	378	Peptidase M12B.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						CATGTGTCACCCCCTGAGGAG	0.592													7	26					0	0	0.003080	0	0
CDH23	64072	broad.mit.edu	37	10	73461880	73461880	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:73461880C>T	uc001jrx.3	+	22	2876	c.2499C>T	c.(2497-2499)ATC>ATT	p.I833I	CDH23_uc001jry.2_Silent_p.I449I|CDH23_uc001jrz.2_Silent_p.I449I	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	833	Cadherin 8.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CGGGCAAGATCCGCACCACCC	0.602													22	102					0	0	0.002780	0	0
CDH23	64072	broad.mit.edu	37	10	73468967	73468967	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:73468967C>T	uc001jrx.3	+	26	3596	c.3219C>T	c.(3217-3219)ATC>ATT	p.I1073I	CDH23_uc001jrz.2_Silent_p.I689I	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1073	Cadherin 10.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						TGGAGGCCATCGGTATGCACC	0.607													10	40					0	0	0.001368	0	0
SPOCK2	9806	broad.mit.edu	37	10	73823966	73823966	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:73823966G>A	uc001jso.1	-	9	1406	c.961C>T	c.(961-963)CAG>TAG	p.Q321*	SPOCK2_uc001jsp.2_Nonsense_Mutation_p.Q321*	NM_014767	NP_055582	Q92563	TICN2_HUMAN	sparc/osteonectin, cwcv and kazal-like domains	321	Thyroglobulin type-1.				extracellular matrix organization|regulation of cell differentiation|signal transduction|synapse assembly	proteinaceous extracellular matrix	calcium ion binding				0						TCCTGGATCTGGATGCGCTCC	0.652													8	39					0	0	0.004482	0	0
USP54	159195	broad.mit.edu	37	10	75289647	75289647	+	Silent	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:75289647T>C	uc001juo.2	-	13	1868	c.1851A>G	c.(1849-1851)GAA>GAG	p.E617E	USP54_uc001juk.2_5'UTR|USP54_uc001jul.2_5'UTR|USP54_uc001jum.2_RNA|USP54_uc001jun.2_RNA|USP54_uc001jup.2_Silent_p.E617E|USP54_uc010qkl.1_Silent_p.E617E	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	617					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					GCTTGCTTGGTTCATCTGGTA	0.463											OREG0020266	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	63					0	0	0.008291	0	0
SFTPA1	653509	broad.mit.edu	37	10	81372117	81372117	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:81372117G>A	uc001kap.2	+	4	343	c.222G>A	c.(220-222)GGG>GGA	p.G74G	SFTPA1_uc001kaq.2_Silent_p.G74G|SFTPA1_uc009xry.2_Silent_p.G89G|SFTPA1_uc001kar.2_Silent_p.G74G|SFTPA1_uc010qlt.1_Silent_p.G15G|SFTPA1_uc009xrz.2_Intron|SFTPA1_uc009xsa.2_Silent_p.G74G|SFTPA1_uc009xsf.2_5'Flank	NM_005411	NP_005402	Q8IWL2	SFTA1_HUMAN	surfactant protein A1 isoform 1	74	Collagen-like.				cell junction assembly|respiratory gaseous exchange	collagen|extracellular space	lipid transporter activity|sugar binding				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			GAAATGATGGGCTGCCTGGAG	0.607													46	171					0	0	0.003610	0	0
KIF20B	9585	broad.mit.edu	37	10	91474907	91474907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:91474907C>T	uc001kgs.1	+	8	980	c.908C>T	c.(907-909)TCC>TTC	p.S303F	KIF20B_uc001kgr.1_Missense_Mutation_p.S303F	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	303	Kinesin-motor.				cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						CTGCGCCTTTCCCAAGACGTA	0.328													7	33					0	0	0.003080	0	0
CPEB3	22849	broad.mit.edu	37	10	93952255	93952255	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:93952255T>C	uc001khw.1	-	3	1317	c.1144A>G	c.(1144-1146)ATG>GTG	p.M382V	CPEB3_uc001khu.1_Missense_Mutation_p.M382V|CPEB3_uc001khv.1_Intron|CPEB3_uc010qnn.1_Intron	NM_014912	NP_055727	Q8NE35	CPEB3_HUMAN	cytoplasmic polyadenylation element binding	382							nucleotide binding|RNA binding				0		Colorectal(252;0.0869)				TTCCTCCACATTATATCAGCG	0.373													12	55					0	0	0.003163	0	0
MYOF	26509	broad.mit.edu	37	10	95107489	95107489	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:95107489G>A	uc001kin.2	-	37	4257	c.4134C>T	c.(4132-4134)ATC>ATT	p.I1378I	MYOF_uc001kio.2_Silent_p.I1365I|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	1378	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						GCCTGTGGTCGATGACCTTGA	0.572													15	37					0	0	0.003163	0	0
PDE6C	5146	broad.mit.edu	37	10	95372614	95372614	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:95372614C>T	uc001kiu.3	+	1	270	c.132C>T	c.(130-132)GTC>GTT	p.V44V		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	44					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				AGGTGCCAGTCCAGTCCAGCA	0.587													16	78					0	0	0.003163	0	0
CYP2C18	1562	broad.mit.edu	37	10	96447961	96447961	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:96447961G>A	uc001kjv.3	+	3	737	c.411G>A	c.(409-411)GGG>GGA	p.G137G	CYP2C18_uc001kjw.3_Silent_p.G137G|CYP2C19_uc009xus.1_Silent_p.G2G|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	137					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		TTGGGATGGGGAAGAGGAGCA	0.473													12	70					0	0	0.001855	0	0
CYP2C19	1557	broad.mit.edu	37	10	96609707	96609707	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:96609707C>T	uc010qnz.1	+	8	1183	c.1183C>T	c.(1183-1185)CTA>TTA	p.L395L	CYP2C19_uc010qny.1_Silent_p.L373L	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	395					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	CACTTCTGTGCTACATGACAA	0.398													19	86					0	0	0.007413	0	0
CYP2C9	1559	broad.mit.edu	37	10	96708900	96708900	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:96708900C>T	uc001kka.3	+	5	703	c.678C>T	c.(676-678)TTC>TTT	p.F226F	CYP2C9_uc009xut.2_Silent_p.F226F	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	226					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	TTGATTACTTCCCGGGAACTC	0.264													9	44					0	0	0.004482	0	0
CUTC	51076	broad.mit.edu	37	10	101514321	101514321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:101514321C>T	uc001kqd.3	+	8	785	c.637C>T	c.(637-639)CTT>TTT	p.L213F	CUTC_uc001kqe.3_RNA	NM_015960	NP_057044	Q9NTM9	CUTC_HUMAN	cutC copper transporter homolog	213					copper ion homeostasis|copper ion transport|protein tetramerization	cytoplasm|nucleus	copper ion binding			breast(1)	1		Colorectal(252;0.234)		Epithelial(162;3e-10)|all cancers(201;2.37e-08)		ACAAAGGATCCTTGAGGGTTC	0.353													56	200					0	0	0.003610	0	0
SEMA4G	57715	broad.mit.edu	37	10	102738085	102738085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:102738085G>A	uc010qpt.1	+	6	912	c.469G>A	c.(469-471)GAG>AAG	p.E157K	SEMA4G_uc001krv.2_RNA|SEMA4G_uc001krw.1_Missense_Mutation_p.E157K|SEMA4G_uc001krx.2_Missense_Mutation_p.E157K|MRPL43_uc001kry.1_3'UTR|MRPL43_uc010qpu.1_3'UTR	NM_017893	NP_060363	Q9NTN9	SEM4G_HUMAN	semaphorin 4G	157	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			breast(1)	1		Colorectal(252;0.234)		Epithelial(162;3.71e-09)|all cancers(201;2.1e-07)		AACCAGCTTCGAGGAGGGGAA	0.532													4	17					0	0	0.000602	0	0
C10orf2	56652	broad.mit.edu	37	10	102748876	102748876	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:102748876G>A	uc001ksf.2	+	1	1584	c.909G>A	c.(907-909)CGG>CGA	p.R303R	MRPL43_uc001kry.1_5'Flank|MRPL43_uc010qpu.1_5'Flank|MRPL43_uc001krz.1_5'Flank|MRPL43_uc001ksa.1_5'Flank|MRPL43_uc001ksb.1_5'Flank|MRPL43_uc001ksd.1_5'Flank|MRPL43_uc001ksc.2_5'Flank|MRPL43_uc001kse.2_5'Flank|C10orf2_uc001ksg.2_Silent_p.R303R|C10orf2_uc001ksi.2_Intron|C10orf2_uc010qpv.1_Intron|C10orf2_uc001ksh.2_Intron	NM_021830	NP_068602	Q96RR1	PEO1_HUMAN	twinkle isoform A	303			R -> W (in PEOA3; also detected in a case showing digenic inheritance).|R -> Q (in PEOA3).		cell death|mitochondrial DNA replication|protein hexamerization|protein homooligomerization|transcription from mitochondrial promoter	mitochondrial nucleoid	5'-3' DNA helicase activity|ATP binding|protease binding|single-stranded DNA binding			ovary(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)|BRCA - Breast invasive adenocarcinoma(275;0.224)		AGTTCCGGCGGATTGTATTCT	0.572													33	143					0	0	0.002836	0	0
C10orf2	56652	broad.mit.edu	37	10	102750629	102750629	+	Silent	SNP	C	T	T	rs146690237	byFrequency	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:102750629C>T	uc001ksf.2	+	4	2271	c.1596C>T	c.(1594-1596)ATC>ATT	p.I532I	C10orf2_uc001ksg.2_Silent_p.I532I|C10orf2_uc001ksi.2_Silent_p.I78I|C10orf2_uc010qpv.1_Silent_p.I78I|C10orf2_uc001ksh.2_RNA	NM_021830	NP_068602	Q96RR1	PEO1_HUMAN	twinkle isoform A	532	SF4 helicase.				cell death|mitochondrial DNA replication|protein hexamerization|protein homooligomerization|transcription from mitochondrial promoter	mitochondrial nucleoid	5'-3' DNA helicase activity|ATP binding|protease binding|single-stranded DNA binding			ovary(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)|BRCA - Breast invasive adenocarcinoma(275;0.224)		GGCGTAGGATCGCAGCTCAAG	0.468													26	126					0	0	0.001786	0	0
KAZALD1	81621	broad.mit.edu	37	10	102824142	102824142	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:102824142C>T	uc001ksr.2	+	3	1561	c.636C>T	c.(634-636)ATC>ATT	p.I212I	KAZALD1_uc001kss.3_RNA|KAZALD1_uc001kst.1_Silent_p.I212I|uc001ksu.2_5'Flank	NM_030929	NP_112191	Q96I82	KAZD1_HUMAN	Kazal-type serine peptidase inhibitor domain 1	212	Ig-like C2-type.				cell differentiation|multicellular organismal development|ossification|regulation of cell growth		insulin-like growth factor binding				0				Epithelial(162;6.21e-09)|all cancers(201;3.14e-07)		GCTTGGACATCCAGCTGCCAG	0.582													9	23					0	0	0.006214	0	0
MGEA5	10724	broad.mit.edu	37	10	103558830	103558830	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:103558830G>A	uc001ktv.2	-	9	2021	c.1578C>T	c.(1576-1578)CCC>CCT	p.P526P	MGEA5_uc001ktu.2_RNA|MGEA5_uc010qqe.1_Silent_p.P473P|MGEA5_uc009xws.2_Silent_p.P473P|MGEA5_uc001ktw.2_Silent_p.P526P|MGEA5_uc009xwt.2_Silent_p.P289P	NM_012215	NP_036347	O60502	NCOAT_HUMAN	meningioma expressed antigen 5 (hyaluronidase)	526					glycoprotein catabolic process	cytoplasm|nucleus	histone acetyltransferase activity|hyalurononglucosaminidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.207)		Epithelial(162;4.67e-09)|all cancers(201;2.54e-07)		CAGTTTGCATGGGGGCAATGT	0.448													28	113					0	0	0.007291	0	0
C10orf79	80217	broad.mit.edu	37	10	105942240	105942240	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:105942240G>A	uc001kxw.2	-	17	2289	c.2173C>T	c.(2173-2175)CTG>TTG	p.L725L	C10orf79_uc009xxq.2_Silent_p.L33L|C10orf79_uc001kxx.3_Silent_p.L726L	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	725											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		TAATAGTCCAGAATTTCACTG	0.348													6	44					0	0	0.001168	0	0
CCDC147	159686	broad.mit.edu	37	10	106163540	106163540	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:106163540G>A	uc001kyh.2	+	14	2227	c.2093G>A	c.(2092-2094)CGA>CAA	p.R698Q		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	698	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		ACACGCTGCCGAGCCCTGGAG	0.488													4	13					0	0	0.000602	0	0
SORCS3	22986	broad.mit.edu	37	10	106960892	106960892	+	Silent	SNP	C	T	T	rs150188088		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:106960892C>T	uc001kyi.1	+	16	2369	c.2142C>T	c.(2140-2142)GTC>GTT	p.V714V	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	714	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		AGCCTTGTGTCATGGGAGAAA	0.463													6	28					0	0	0.003080	0	0
NRAP	4892	broad.mit.edu	37	10	115350562	115350562	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:115350562G>A	uc001laj.2	-	40	4895	c.4731C>T	c.(4729-4731)TTC>TTT	p.F1577F	NRAP_uc009xyb.2_Silent_p.F330F|NRAP_uc001lak.2_Silent_p.F1542F|NRAP_uc001lal.3_Silent_p.F1577F	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	1577	Nebulin 42.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		CAACGTTGAGGAAATGCTTCA	0.567													13	64					0	0	0.001855	0	0
DMBT1	1755	broad.mit.edu	37	10	124358529	124358529	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:124358529G>A	uc001lgk.1	+	26	3302	c.3196G>A	c.(3196-3198)GAG>AAG	p.E1066K	DMBT1_uc001lgl.1_Missense_Mutation_p.E1056K|DMBT1_uc001lgm.1_Missense_Mutation_p.E567K|DMBT1_uc009xzz.1_Missense_Mutation_p.E1066K|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Missense_Mutation_p.E27K	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1066	SRCR 8.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CTCAGGACACGAGTCTTACCT	0.597													25	115					0	0	0.003330	0	0
CUZD1	50624	broad.mit.edu	37	10	124593224	124593224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:124593224G>A	uc001lgq.2	-	8	1947	c.1615C>T	c.(1615-1617)CGT>TGT	p.R539C	CUZD1_uc001lgp.2_Missense_Mutation_p.R258C|CUZD1_uc009yad.2_Missense_Mutation_p.R258C|CUZD1_uc009yaf.2_Missense_Mutation_p.R173C|CUZD1_uc001lgr.2_Missense_Mutation_p.R258C|CUZD1_uc010qty.1_Missense_Mutation_p.R258C|CUZD1_uc009yae.2_Missense_Mutation_p.R258C|CUZD1_uc001lgs.2_Missense_Mutation_p.R539C|CUZD1_uc010qtz.1_Missense_Mutation_p.R539C	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	539	Extracellular (Potential).				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		CTTTTCAGACGAATGGGTCCT	0.423													26	97					0	0	0.008361	0	0
SYCE1	93426	broad.mit.edu	37	10	135369188	135369188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:135369188C>T	uc001lno.2	-	11	848	c.743G>A	c.(742-744)AGG>AAG	p.R248K	CYP2E1_uc001lnl.1_3'UTR|SYCE1_uc001lnm.2_Missense_Mutation_p.R120K|SYCE1_uc009ybn.2_Missense_Mutation_p.R248K|SYCE1_uc001lnn.2_Missense_Mutation_p.R212K	NM_001143764	NP_001137236	Q8N0S2	SYCE1_HUMAN	synaptonemal complex central element protein 1	248	Potential.				cell division	central element				ovary(1)	1		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		CTCAGCCTTCCTGTGCTCTTC	0.423													14	53					0	0	0.004007	0	0
FRG2B	441581	broad.mit.edu	37	10	135438925	135438925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:135438925C>T	uc010qvg.1	-	4	568	c.515G>A	c.(514-516)CGA>CAA	p.R172Q		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	172						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		CAAGCTTTTTCGAATTGACGG	0.562													29	151					0	0	0.002445	0	0
LOC653544	653544	broad.mit.edu	37	10	135491100	135491100	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr10:135491100G>A	uc010qvi.1	+	1	822	c.711G>A	c.(709-711)TCG>TCA	p.S237S		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	237						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTGCTCCCTCGTGGGTCGCCT	0.761													5	56					0	0	0.001984	0	0
RNH1	6050	broad.mit.edu	37	11	498091	498091	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:498091A>T	uc001lpk.1	-	7	2415	c.1007T>A	c.(1006-1008)GTG>GAG	p.V336E	RNH1_uc001lpl.1_Missense_Mutation_p.V336E|RNH1_uc001lpm.1_Missense_Mutation_p.V336E|RNH1_uc001lpn.1_Missense_Mutation_p.V336E|RNH1_uc001lpo.1_Missense_Mutation_p.V336E|RNH1_uc009ybw.1_RNA|RNH1_uc001lpp.1_Missense_Mutation_p.V336E|RNH1_uc001lpt.1_Missense_Mutation_p.V93E|RNH1_uc001lpq.1_Missense_Mutation_p.V336E|RNH1_uc001lpr.1_Missense_Mutation_p.V336E|RNH1_uc001lps.1_Missense_Mutation_p.V336E	NM_203389	NP_976323	P13489	RINI_HUMAN	ribonuclease/angiogenin inhibitor	336	LRR 12.				mRNA catabolic process|regulation of angiogenesis	angiogenin-PRI complex|cytoplasm	protein binding|ribonuclease inhibitor activity				0		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.26e-26)|Epithelial(43;1.34e-25)|OV - Ovarian serous cystadenocarcinoma(40;5.31e-20)|BRCA - Breast invasive adenocarcinoma(625;8.01e-05)|Lung(200;0.0378)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CTGGGCCAGCACTGAGCTGAA	0.652													10	54					0	0	0.006214	0	0
MUC2	4583	broad.mit.edu	37	11	1093904	1093904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:1093904C>T	uc001lsx.1	+	33	12836	c.12809C>T	c.(12808-12810)CCA>CTA	p.P4270L		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4270						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	ACACTGTCTCCACCGCCCAGC	0.647													5	51					0	0	0.000602	0	0
KRTAP5-3	387266	broad.mit.edu	37	11	1629547	1629547	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:1629547G>A	uc001ltw.1	-	1	147	c.69C>T	c.(67-69)GGC>GGT	p.G23G		NM_001012708	NP_001012726	Q6L8H2	KRA53_HUMAN	keratin associated protein 5-3	23						keratin filament				ovary(2)	2		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000618)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)		CGGAGCCACAGCCCCCACAGC	0.657													29	117					0	0	0.008361	0	0
TRPM5	29850	broad.mit.edu	37	11	2443414	2443414	+	Silent	SNP	C	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:2443414C>G	uc001lwm.3	-	2	264	c.255G>C	c.(253-255)CGG>CGC	p.R85R	TRPM5_uc010qxl.1_Silent_p.R85R|TRPM5_uc009ydn.2_Silent_p.R85R	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	85	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		GCAGCACATCCCGCAGCCAGG	0.682													26	175					0	0	0.005443	0	0
OR52K1	390036	broad.mit.edu	37	11	4511075	4511075	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:4511075G>A	uc001lza.1	+	1	945	c.945G>A	c.(943-945)TAG>TAA	p.*315*		NM_001005171	NP_001005171	Q8NGK4	O52K1_HUMAN	olfactory receptor, family 52, subfamily K,	315					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.76e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0836)|LUSC - Lung squamous cell carcinoma(625;0.192)		AGAACATGTAGATGGATAGTT	0.398													12	54					0	0	0.001368	0	0
OR51D1	390038	broad.mit.edu	37	11	4661092	4661092	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:4661092C>T	uc010qyk.1	+	1	72	c.72C>T	c.(70-72)TTC>TTT	p.F24F		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGCATACTTCCTTTTGGTGG	0.502													21	142					0	0	0.008871	0	0
OR51D1	390038	broad.mit.edu	37	11	4661907	4661907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:4661907C>T	uc010qyk.1	+	1	887	c.887C>T	c.(886-888)CCA>CTA	p.P296L		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	296	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTGCTGCTACCACCTGTAGTC	0.522													23	129					0	0	0.002780	0	0
OR51S1	119692	broad.mit.edu	37	11	4869932	4869932	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:4869932G>A	uc010qyo.1	-	1	507	c.507C>T	c.(505-507)TTC>TTT	p.F169F		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	169	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGGCCAGCAGGAATGGCAGGG	0.552													47	104					0	0	0.003610	0	0
OR52E2	119678	broad.mit.edu	37	11	5080094	5080094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:5080094G>A	uc010qyw.1	-	1	764	c.764C>T	c.(763-765)CCA>CTA	p.P255L		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		AAAGAGGGCTGGTGTATAGAA	0.473													12	70					0	0	0.001368	0	0
OR52A1	23538	broad.mit.edu	37	11	5172693	5172693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:5172693G>A	uc010qyy.1	-	1	907	c.907C>T	c.(907-909)CGC>TGC	p.R303C		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACATGAATGCGAATCTGTGTG	0.358													20	153					0	0	0.002780	0	0
OR52A1	23538	broad.mit.edu	37	11	5173472	5173472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:5173472C>T	uc010qyy.1	-	1	128	c.128G>A	c.(127-129)GGA>GAA	p.G43E		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAAGGAATTTCCAATCATAGC	0.468													18	65					0	0	0.006122	0	0
OR51M1	390059	broad.mit.edu	37	11	5411114	5411114	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:5411114C>T	uc010qzc.1	+	1	486	c.486C>T	c.(484-486)TTC>TTT	p.F162F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	162						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTGTCATCTTCCGGGGACCTG	0.542													55	231					0	0	0.003610	0	0
OR52N4	390072	broad.mit.edu	37	11	5776340	5776340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:5776340C>T	uc001mbu.2	+	1	418	c.370C>T	c.(370-372)CGC>TGC	p.R124C	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	124	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		GGCCCTGGATCGCTATGTGGC	0.493													22	116					0	0	0.002780	0	0
OR56A5	390084	broad.mit.edu	37	11	5989503	5989503	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:5989503G>A	uc010qzu.1	-	1	222	c.222C>T	c.(220-222)ATC>ATT	p.I74I		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	74	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						GGCAGAGTACGATGTCCAGCA	0.562													17	35					0	0	0.007413	0	0
C11orf42	160298	broad.mit.edu	37	11	6231301	6231301	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:6231301G>A	uc001mcj.2	+	2	342	c.294G>A	c.(292-294)CGG>CGA	p.R98R		NM_173525	NP_775796	Q8N5U0	CK042_HUMAN	hypothetical protein LOC160298	98										ovary(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.95e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACTGCACTCGGGAATACTCAC	0.607													12	51					0	0	0.000978	0	0
FAM160A2	84067	broad.mit.edu	37	11	6239944	6239944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:6239944G>A	uc001mcl.3	-	8	1680	c.1321C>T	c.(1321-1323)CGT>TGT	p.R441C	FAM160A2_uc001mck.3_Missense_Mutation_p.R441C|FAM160A2_uc001mcm.2_Missense_Mutation_p.R441C	NM_001098794	NP_001092264	Q8N612	F16A2_HUMAN	hypothetical protein LOC84067 isoform 2	441					early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|protein transport	FHF complex	protein binding			skin(2)	2						TCCACATCACGAACAGCCGGC	0.542													32	135					0	0	0.002836	0	0
TRIM3	10612	broad.mit.edu	37	11	6472626	6472626	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:6472626G>A	uc001mdh.2	-	9	1963	c.1576C>T	c.(1576-1578)CGA>TGA	p.R526*	TRIM3_uc001mdi.2_Nonsense_Mutation_p.R526*|TRIM3_uc010raj.1_Nonsense_Mutation_p.R407*|TRIM3_uc009yfd.2_Nonsense_Mutation_p.R526*|TRIM3_uc010rak.1_Nonsense_Mutation_p.R526*	NM_006458	NP_006449	O75382	TRIM3_HUMAN	tripartite motif-containing 3	526	NHL 2.				nervous system development|protein transport	early endosome	protein C-terminus binding|zinc ion binding	p.R526*(1)		central_nervous_system(2)|large_intestine(1)|ovary(1)|skin(1)	5		all_lung(207;9.97e-06)|Lung NSC(207;1.74e-05)|Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;9.34e-10)|Lung(200;0.0234)|LUSC - Lung squamous cell carcinoma(625;0.133)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAGCGTCCTCGGACCCCAAAA	0.582													31	78					0	0	0.001786	0	0
MICAL2	9645	broad.mit.edu	37	11	12270761	12270761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:12270761C>T	uc001mjz.2	+	22	3103	c.2815C>T	c.(2815-2817)CAT>TAT	p.H939Y	MICAL2_uc010rch.1_Missense_Mutation_p.H749Y|MICAL2_uc001mka.2_Missense_Mutation_p.H939Y|MICAL2_uc010rci.1_Intron|MICAL2_uc001mkb.2_Missense_Mutation_p.H749Y|MICAL2_uc001mkc.2_Intron|MICAL2_uc001mkd.2_Intron|MICAL2_uc010rcj.1_Missense_Mutation_p.H151Y|MICAL2_uc001mkf.2_Intron	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	939						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		gttccattttcatcccagcca	0.139													9	39					0	0	0.004482	0	0
RPS13	6207	broad.mit.edu	37	11	17097113	17097113	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:17097113T>G	uc001mmp.2	-	4	241	c.209A>C	c.(208-210)AAA>ACA	p.K70T		NM_001017	NP_001008	P62277	RS13_HUMAN	ribosomal protein S13	70					endocrine pancreas development|negative regulation of RNA splicing|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleolus	mRNA binding|protein binding|structural constituent of ribosome				0						TCTTAAAATTTTATTGCCTGT	0.373													9	42					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	11	30946906	30946906	+	RNA	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:30946906C>T	uc001mss.1	-	1		c.50G>A			uc009yjk.1_Missense_Mutation_p.E431K					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		TTCCCCTTTTCATTGTACAAT	0.363													41	131					0	0	0.003214	0	0
QSER1	79832	broad.mit.edu	37	11	32953685	32953685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:32953685C>T	uc001mty.2	+	4	761	c.494C>T	c.(493-495)GCC>GTC	p.A165V	QSER1_uc001mtz.1_Missense_Mutation_p.A165V|QSER1_uc001mua.2_5'Flank	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	165	Ser-rich.									ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					ACTCCTCAAGCCTACAGTTCA	0.458													38	115					0	0	0.006230	0	0
PAMR1	25891	broad.mit.edu	37	11	35461194	35461194	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:35461194G>A	uc001mwg.2	-	8	1124	c.1081C>T	c.(1081-1083)CCG>TCG	p.P361S	PAMR1_uc001mwf.2_Missense_Mutation_p.P378S|PAMR1_uc010rew.1_Missense_Mutation_p.P250S|PAMR1_uc010rex.1_Missense_Mutation_p.P321S	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	361					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						ACCTGCATCGGAAGAACTCTC	0.463													22	113					0	0	0.008361	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136434	40136434	+	Missense_Mutation	SNP	C	T	T	rs74858686	by1000genomes	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:40136434C>T	uc001mxa.1	-	2	3373	c.1409G>A	c.(1408-1410)CGG>CAG	p.R470Q	LRRC4C_uc001mxc.1_Missense_Mutation_p.R466Q|LRRC4C_uc001mxd.1_Missense_Mutation_p.R466Q|LRRC4C_uc001mxb.1_Missense_Mutation_p.R466Q	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	470					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				ATCTGTGGTCCGTGCCTCATC	0.517													13	67					0	0	0.001855	0	0
PHF21A	51317	broad.mit.edu	37	11	45987070	45987070	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:45987070G>A	uc001ncc.3	-	9	1413	c.789C>T	c.(787-789)CCC>CCT	p.P263P	PHF21A_uc001ncb.3_Silent_p.P264P|PHF21A_uc009ykx.2_Silent_p.P264P|PHF21A_uc001nce.2_Silent_p.P264P|PHF21A_uc001nca.1_5'UTR	NM_001101802	NP_001095272	Q96BD5	PF21A_HUMAN	BRAF35/HDAC2 complex isoform a	263					blood coagulation|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						TCAGCATGACGGGCCTCTGGA	0.562											OREG0020936	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	25					0	0	0.001855	0	0
MADD	8567	broad.mit.edu	37	11	47350616	47350616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:47350616C>T	uc001ner.1	+	36	5050	c.4859C>T	c.(4858-4860)TCC>TTC	p.S1620F	MADD_uc001neq.2_Missense_Mutation_p.S1561F|MADD_uc001nev.1_3'UTR|MADD_uc001nes.1_Missense_Mutation_p.S1538F|MADD_uc001net.1_Missense_Mutation_p.S1581F|MADD_uc009yln.1_Missense_Mutation_p.S1514F|MADD_uc001neu.1_Missense_Mutation_p.S1518F|MADD_uc001nex.2_3'UTR|MADD_uc001nez.2_Missense_Mutation_p.S1517F|MADD_uc001new.2_Missense_Mutation_p.S1560F	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	1620					activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity	p.S1620F(2)		ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		ATCTGCTACTCCGTATTATGT	0.537													57	128					0	0	0.003610	0	0
FNBP4	23360	broad.mit.edu	37	11	47776089	47776089	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:47776089G>A	uc009ylv.2	-	3	594	c.441C>T	c.(439-441)AAC>AAT	p.N147N	FNBP4_uc001ngj.2_Silent_p.N54N|FNBP4_uc001ngl.2_Intron	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	147										ovary(1)	1						CCGCTAGGAAGTTGGCCAATG	0.413													11	66					0	0	0.000978	0	0
OR4C13	283092	broad.mit.edu	37	11	49974850	49974850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:49974850G>A	uc010rhz.1	+	1	876	c.876G>A	c.(874-876)ATG>ATA	p.M292I		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	292	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						ATGCTCAAATGAAAAATGCCA	0.383													5	35					0	0	0.001168	0	0
OR5D13	390142	broad.mit.edu	37	11	55541318	55541318	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:55541318C>T	uc010ril.1	+	1	405	c.405C>T	c.(403-405)ACC>ACT	p.T135T		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	135	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				TGCTGTATACCACTATTATGT	0.418													34	225					0	0	0.004878	0	0
OR5L2	26338	broad.mit.edu	37	11	55594874	55594874	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:55594874C>T	uc001nhy.1	+	1	180	c.180C>T	c.(178-180)TAC>TAT	p.Y60Y		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				CCCCCGTGTACTTTTTCCTCA	0.463										HNSCC(27;0.073)			32	188					0	0	0.004289	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735289	55735289	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:55735289C>T	uc010rit.1	-	1	651	c.651G>A	c.(649-651)TTG>TTA	p.L217L		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	217	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					ATGACAATTTCAAAATGTTGG	0.393													7	26					0	0	0.003080	0	0
OR8K3	219473	broad.mit.edu	37	11	56086497	56086497	+	Missense_Mutation	SNP	A	T	T	rs137986069		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:56086497A>T	uc010rjf.1	+	1	715	c.715A>T	c.(715-717)ACC>TCC	p.T239S		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	239	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					GGCTTTTTCTACCTGTGGAGC	0.428													9	52					0	0	0.006214	0	0
OR8K1	390157	broad.mit.edu	37	11	56113517	56113517	+	Missense_Mutation	SNP	G	A	A	rs146780927		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:56113517G>A	uc010rjg.1	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001002907	NP_001002907	Q8NGG5	OR8K1_HUMAN	olfactory receptor, family 8, subfamily K,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					TTACCAAGATGAATCATGTGG	0.358										HNSCC(65;0.19)			10	26					0	0	0.000978	0	0
OR8J1	219477	broad.mit.edu	37	11	56128027	56128027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:56128027G>A	uc010rjh.1	+	1	305	c.305G>A	c.(304-306)GGA>GAA	p.G102E		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					ACCCAACTGGGAGGGTTCTTG	0.413													30	83					0	0	0.008361	0	0
OR5M10	390167	broad.mit.edu	37	11	56345152	56345152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:56345152C>T	uc001niz.1	-	1	46	c.46G>A	c.(46-48)GGA>AGA	p.G16R		NM_001004741	NP_001004741	Q6IEU7	OR5MA_HUMAN	olfactory receptor, family 5, subfamily M,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCTGTCAGTCCTAAGAGAATG	0.453													36	89					0	0	0.004289	0	0
OR9G4	283189	broad.mit.edu	37	11	56510651	56510651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:56510651C>T	uc010rjo.1	-	1	637	c.637G>A	c.(637-639)GTC>ATC	p.V213I		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	213	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CCAAGCAGGACTTTTTCGTAG	0.453													8	39					0	0	0.003080	0	0
OR9Q1	219956	broad.mit.edu	37	11	57947246	57947246	+	Silent	SNP	C	T	T	rs139179075	byFrequency	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:57947246C>T	uc001nmj.2	+	3	646	c.330C>T	c.(328-330)ATC>ATT	p.I110I		NM_001005212	NP_001005212	Q8NGQ5	OR9Q1_HUMAN	olfactory receptor, family 9, subfamily Q,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.222)				TTGGTTCCATCGACTGCTACC	0.562													29	52					0	0	0.001786	0	0
OR1S2	219958	broad.mit.edu	37	11	57971493	57971493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:57971493C>T	uc010rkb.1	-	1	161	c.161G>A	c.(160-162)GGG>GAG	p.G54E		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	54	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GAGCCCGTTCCCAACCACAGT	0.458													36	61					0	0	0.003755	0	0
OR5A1	219982	broad.mit.edu	37	11	59211024	59211024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:59211024C>T	uc001nnx.1	+	1	383	c.383C>T	c.(382-384)GCC>GTC	p.A128V		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	128	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						CGATATGCAGCCATCTCCAGC	0.537													20	221					0	0	0.001882	0	0
TCN1	6947	broad.mit.edu	37	11	59626734	59626734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:59626734C>T	uc001noj.2	-	5	661	c.563G>A	c.(562-564)GGT>GAT	p.G188D		NM_001062	NP_001053	P20061	TCO1_HUMAN	transcobalamin I precursor	188					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular region	cobalamin binding			ovary(2)	2		all_epithelial(135;0.198)			Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	AGCCATTGCACCAGTATCTGT	0.264													21	52					0	0	0.002780	0	0
TMEM132A	54972	broad.mit.edu	37	11	60702230	60702230	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:60702230C>T	uc001nqj.2	+	9	2023	c.1830C>T	c.(1828-1830)TCC>TCT	p.S610S	TMEM132A_uc001nqi.2_Silent_p.S611S|TMEM132A_uc001nqm.2_5'UTR	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	610	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						GTGTCACCTCCATTGAGGTAA	0.662													9	54					0	0	0.001368	0	0
TMEM132A	54972	broad.mit.edu	37	11	60703807	60703807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:60703807G>A	uc001nqj.2	+	11	2693	c.2500G>A	c.(2500-2502)GAG>AAG	p.E834K	TMEM132A_uc001nqi.2_Missense_Mutation_p.E835K|TMEM132A_uc001nqm.2_Missense_Mutation_p.E44K	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	834	Glu-rich.|Binds to HSPA5/GRP78 (By similarity).|Confers cellular localization similar to full-length form (By similarity).|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						ggaagaggaggaggagATGGT	0.517													40	107					0	0	0.008740	0	0
C11orf48	79081	broad.mit.edu	37	11	62435109	62435109	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:62435109T>A	uc001nue.2	-	4	859	c.424A>T	c.(424-426)ACA>TCA	p.T142S	C11orf48_uc001nuf.2_Missense_Mutation_p.T142S|METTL12_uc001nuh.2_3'UTR|C11orf48_uc010rmd.1_Missense_Mutation_p.T142S	NM_024099	NP_077004	Q9BQE6	CK048_HUMAN	hypothetical protein LOC79081	168											0						AGACATGCTGTGTCCTCAAGA	0.522													108	234					0	0	0.003610	0	0
SLC22A8	9376	broad.mit.edu	37	11	62760752	62760752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:62760752C>T	uc001nwo.2	-	11	1722	c.1586G>A	c.(1585-1587)AGG>AAG	p.R529K	SLC22A8_uc001nwn.1_3'UTR|SLC22A8_uc001nwp.2_3'UTR|SLC22A8_uc009yom.2_Missense_Mutation_p.R406K|SLC22A8_uc010rmm.1_Missense_Mutation_p.R438K|SLC22A8_uc009yon.2_Missense_Mutation_p.R529K	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	529	Extracellular (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						TAGAGGGATCCTCTGGGAGGC	0.612													13	38					0	0	0.003163	0	0
SLC22A25	387601	broad.mit.edu	37	11	62933677	62933677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:62933677C>T	uc001nwr.1	-	7	1124	c.1124G>A	c.(1123-1125)GGA>GAA	p.G375E	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_3'UTR	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	375	Extracellular (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						AACATTGTTTCCCAGATGCTG	0.478													4	41					0	0	0.000248	0	0
SLC22A25	387601	broad.mit.edu	37	11	62985178	62985178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:62985178G>A	uc001nwr.1	-	3	536	c.536C>T	c.(535-537)TCT>TTT	p.S179F	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_Intron|SLC22A25_uc001nwt.1_Missense_Mutation_p.S179F	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	179	Helical; Name=3; (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						CTGGAGGTAAGACCATCTGAG	0.507													9	54					0	0	0.001368	0	0
RARRES3	5920	broad.mit.edu	37	11	63313664	63313664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:63313664G>A	uc001nxf.3	+	4	499	c.431G>A	c.(430-432)GGA>GAA	p.G144E		NM_004585	NP_004576	Q9UL19	TIG3_HUMAN	retinoic acid receptor responder (tazarotene	144					lipid catabolic process|negative regulation of cell proliferation		hydrolase activity			ovary(1)	1						ACGGCGCTTGGAATCCTGGTT	0.512													81	186					0	0	0.003610	0	0
PPP2R5B	5526	broad.mit.edu	37	11	64698008	64698008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:64698008C>T	uc001oby.2	+	8	1423	c.838C>T	c.(838-840)CGC>TGC	p.R280C	PPP2R5B_uc001obz.2_Missense_Mutation_p.R280C	NM_006244	NP_006235	Q15173	2A5B_HUMAN	beta isoform of regulatory subunit B56, protein	280					signal transduction	cytoplasm|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(2)	2						GTTCCTGGTTCGCGTCCTGAT	0.607													18	82					0	0	0.001523	0	0
NAALADL1	10004	broad.mit.edu	37	11	64822107	64822107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:64822107G>A	uc001ocn.2	-	5	723	c.707C>T	c.(706-708)TCC>TTC	p.S236F	NAALADL1_uc010rnw.1_5'UTR	NM_005468	NP_005459	Q9UQQ1	NALDL_HUMAN	N-acetylated alpha-linked acidic	236	Extracellular (Potential).				proteolysis	apical plasma membrane|integral to membrane	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity				0						CAGGTACCAGGAGTTGGGAAA	0.612											OREG0032001	type=REGULATORY REGION|TFbs=RELA|Dataset=RELA (p65) ChIP-PET Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with paired-end diTag sequencing (ChIP-PET)	10	30					0	0	0.008291	0	0
TSGA10IP	254187	broad.mit.edu	37	11	65714678	65714678	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:65714678C>T	uc001ogk.1	+	5	414	c.382C>T	c.(382-384)CCA>TCA	p.P128S	TSGA10IP_uc009yqw.1_RNA|TSGA10IP_uc009yqx.1_Intron	NM_152762	NP_689975	Q3SY00	T10IP_HUMAN	testis specific, 10 interacting protein	128											0						GCCAAGCTCCCCAACCCCTGG	0.652													3	13					0	0	0.004672	0	0
SHANK2	22941	broad.mit.edu	37	11	70333293	70333293	+	Silent	SNP	G	A	A	rs115697891	byFrequency	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:70333293G>A	uc001oqc.2	-	21	3183	c.3105C>T	c.(3103-3105)ATC>ATT	p.I1035I	SHANK2_uc010rqn.1_Silent_p.I447I|SHANK2_uc001opz.2_Silent_p.I440I|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	656					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			GCTCCTTCACGATGATGGTCG	0.677													56	97					0	0	0.003610	0	0
DHCR7	1717	broad.mit.edu	37	11	71146863	71146863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:71146863G>A	uc001oqk.2	-	9	1236	c.986C>T	c.(985-987)CCC>CTC	p.P329L	DHCR7_uc001oql.2_Missense_Mutation_p.P329L	NM_001163817	NP_001157289	Q9UBM7	DHCR7_HUMAN	7-dehydrocholesterol reductase	329					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|nuclear outer membrane	7-dehydrocholesterol reductase activity|protein binding			ovary(1)|liver(1)	2					NADH(DB00157)	CAGCTGCACGGGGTGGTACAC	0.562									Smith-Lemli-Opitz_syndrome				14	27					0	0	0.002450	0	0
INPPL1	3636	broad.mit.edu	37	11	71946430	71946430	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:71946430A>T	uc001osf.2	+	23	2741	c.2594A>T	c.(2593-2595)AAT>ATT	p.N865I	INPPL1_uc001osg.2_Missense_Mutation_p.N623I	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	865					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						GAGACAGGCAATATCAGAGGC	0.617													35	217					0	0	0.006230	0	0
INPPL1	3636	broad.mit.edu	37	11	71948480	71948480	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:71948480C>T	uc001osf.2	+	26	3339	c.3192C>T	c.(3190-3192)TTC>TTT	p.F1064F	INPPL1_uc001osg.2_Silent_p.F822F	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	1064	Pro-rich.				actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						CAGCCATCTTCCTGCCCCCCA	0.662													18	61					0	0	0.001523	0	0
CHCHD8	51287	broad.mit.edu	37	11	73584408	73584408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:73584408G>A	uc001ouj.2	-	2	121	c.16C>T	c.(16-18)CCT>TCT	p.P6S	CHCHD8_uc009ytw.2_RNA	NM_016565	NP_057649	Q9NYJ1	CHCH8_HUMAN	coiled-coil-helix-coiled-coil-helix domain	6											0	Breast(11;7.42e-05)					TGGCCTTGAGGGACTGAGGTT	0.502													9	77					0	0	0.006214	0	0
FAT3	120114	broad.mit.edu	37	11	92430568	92430568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:92430568C>T	uc001pdj.3	+	3	3643	c.3626C>T	c.(3625-3627)TCA>TTA	p.S1209L		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1209	Cadherin 11.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ACAACAACTTCAAGGAAATTG	0.378										TCGA Ovarian(4;0.039)			66	179					0	0	0.003610	0	0
MAML2	84441	broad.mit.edu	37	11	95712580	95712580	+	Silent	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:95712580T>C	uc001pfw.1	-	5	4288	c.3003A>G	c.(3001-3003)CAA>CAG	p.Q1001Q		NM_032427	NP_115803	Q8IZL2	MAML2_HUMAN	mastermind-like 2	1001					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity		CRTC1/MAML2(516)|CRTC3/MAML2(26)	salivary_gland(500)|lung(36)|thyroid(4)|breast(3)|skin(2)|ovary(1)	546		Acute lymphoblastic leukemia(157;2.63e-05)|all_hematologic(158;0.00837)				CTACTGCCTGTTGCAGTGACT	0.522			T	MECT1|CRTC3	salivary gland mucoepidermoid								5	21					0	0	0.001168	0	0
TRPC6	7225	broad.mit.edu	37	11	101347072	101347072	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:101347072C>T	uc001pgk.3	-	6	2129	c.1704G>A	c.(1702-1704)ACG>ACA	p.T568T	TRPC6_uc009ywy.2_Silent_p.T452T|TRPC6_uc009ywz.1_Silent_p.T513T	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	568	Extracellular (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		ATGTTACTTTCGTCAAGTCCT	0.363													7	24					0	0	0.003080	0	0
MMP13	4322	broad.mit.edu	37	11	102825186	102825186	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:102825186C>T	uc001phl.2	-	3	539	c.511_splice	c.e3+1	p.E171_splice		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein						collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		TGCATCATTACCCTTAATTCC	0.294													5	10					0	0	0.000602	0	0
SIK3	23387	broad.mit.edu	37	11	116732561	116732561	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:116732561G>A	uc001ppy.2	-	17	2029	c.1993C>T	c.(1993-1995)CAG>TAG	p.Q665*	SIK3_uc001ppz.2_Nonsense_Mutation_p.Q564*|SIK3_uc001pqa.2_Nonsense_Mutation_p.Q665*|SIK3_uc001ppw.2_Nonsense_Mutation_p.Q82*|SIK3_uc001ppx.2_Silent_p.S139S|SIK3_uc001pqb.2_5'Flank	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	665	Gln-rich.					cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						TCATACCTCTGGAGCTGATGG	0.488											OREG0003492	type=REGULATORY REGION|Gene=BC035583|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	36	220					0	0	0.005524	0	0
VWA5A	4013	broad.mit.edu	37	11	123989280	123989280	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:123989280A>G	uc001pzu.2	+	6	719	c.510A>G	c.(508-510)ATA>ATG	p.I170M	VWA5A_uc001pzr.2_Missense_Mutation_p.I170M|VWA5A_uc001pzs.2_Missense_Mutation_p.I170M|VWA5A_uc010sae.1_Missense_Mutation_p.I186M|VWA5A_uc001pzt.2_Missense_Mutation_p.I170M	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	170										upper_aerodigestive_tract(1)|ovary(1)	2						AGACTCCTATAGTCCCTGTGG	0.478													27	93					0	0	0.003954	0	0
CDON	50937	broad.mit.edu	37	11	125889648	125889648	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr11:125889648A>C	uc009zbw.2	-	4	490	c.362T>G	c.(361-363)TTT>TGT	p.F121C	CDON_uc001qdc.3_Missense_Mutation_p.F121C|CDON_uc001qdd.3_RNA|CDON_uc009zbx.2_Missense_Mutation_p.F121C	NM_016952	NP_058648	Q4KMG0	CDON_HUMAN	surface glycoprotein, Ig superfamily member	121	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|skin(2)|breast(1)	6	all_hematologic(175;0.177)	Breast(109;0.00157)|Lung NSC(97;0.0127)|all_lung(97;0.0133)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.51e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0604)		GGATGAACCAAAATCACCAAG	0.358													14	25					0	0	0.001855	0	0
IQSEC3	440073	broad.mit.edu	37	12	247543	247543	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:247543C>T	uc001qhw.1	+	1	111	c.105C>T	c.(103-105)ATC>ATT	p.I35I	IQSEC3_uc001qhu.1_Silent_p.I35I|IQSEC3_uc001qht.1_Silent_p.I120I|uc001qhv.1_RNA	NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	338	IQ.				regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		TCGAGAAAATCCGCAACTCGC	0.632													4	26					0	0	0.000248	0	0
IQSEC3	440073	broad.mit.edu	37	12	274620	274620	+	Silent	SNP	G	A	A	rs144152224		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:274620G>A	uc001qhw.1	+	7	1827	c.1821G>A	c.(1819-1821)AAG>AAA	p.K607K	IQSEC3_uc001qhu.1_Silent_p.K607K	NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	910	PH.				regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		TTTGCCCGAAGAAGAAGAGCT	0.522													36	134					0	0	0.007835	0	0
EFCAB4B	84766	broad.mit.edu	37	12	3805956	3805956	+	Silent	SNP	G	A	A	rs139345952	byFrequency	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:3805956G>A	uc001qmj.2	-	4	782	c.210C>T	c.(208-210)ATC>ATT	p.I70I	EFCAB4B_uc010sen.1_Silent_p.I70I|EFCAB4B_uc010seo.1_Silent_p.I70I	NM_032680	NP_116069	Q9BSW2	EFC4B_HUMAN	EF-hand calcium binding domain 4B isoform c	70	EF-hand 1.				activation of store-operated calcium channel activity|store-operated calcium entry	cytoplasm	calcium ion binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.00287)|COAD - Colon adenocarcinoma(12;0.0264)			CCTTCCTGGCGATGAAGCCCT	0.567													6	47					0	0	0.003080	0	0
PLEKHG6	55200	broad.mit.edu	37	12	6426484	6426484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:6426484C>T	uc001qnr.2	+	8	920	c.772C>T	c.(772-774)CAC>TAC	p.H258Y	PLEKHG6_uc001qns.2_Missense_Mutation_p.H258Y|PLEKHG6_uc010sew.1_Missense_Mutation_p.H258Y|PLEKHG6_uc010sex.1_Missense_Mutation_p.H226Y	NM_018173	NP_060643	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain-containing family G	258	DH.				regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|skin(1)	2						CCAGCGGTTCCACCCCTATGT	0.587													9	47					0	0	0.004482	0	0
CD163	9332	broad.mit.edu	37	12	7639179	7639179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:7639179C>T	uc001qsz.3	-	10	2502	c.2374G>A	c.(2374-2376)GAA>AAA	p.E792K	CD163_uc001qta.3_Missense_Mutation_p.E792K|CD163_uc009zfw.2_Missense_Mutation_p.E825K	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	792	SRCR 7.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						ATGCGGGATTCTTTTCCATTG	0.512													30	146					0	0	0.003271	0	0
A2ML1	144568	broad.mit.edu	37	12	9004870	9004870	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:9004870C>T	uc001quz.3	+	20	2626	c.2528C>T	c.(2527-2529)TCC>TTC	p.S843F	A2ML1_uc001qva.1_Missense_Mutation_p.S423F|A2ML1_uc010sgm.1_Missense_Mutation_p.S343F	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	687						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						TCTCAGACCTCCAGTTGTCTC	0.493													39	154					0	0	0.006230	0	0
A2M	2	broad.mit.edu	37	12	9264767	9264767	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:9264767G>A	uc001qvk.1	-	4	584	c.471C>T	c.(469-471)CCC>CCT	p.P157P	A2M_uc009zgk.1_Silent_p.P7P	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	157					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	ACTCATTCAGGGGGTGAAAGT	0.423													6	50					0	0	0.003080	0	0
HIST4H4	121504	broad.mit.edu	37	12	14923804	14923804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:14923804G>A	uc001rcf.3	-	1	262	c.215C>T	c.(214-216)ACT>ATT	p.T72I	HIST4H4_uc001rce.2_RNA	NM_175054	NP_778224	P62805	H4_HUMAN	histone cluster 4, H4	72					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(2)	2						CTCCGTGTAAGTCACCGCGTC	0.607											OREG0021698	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	60					0	0	0.001368	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21329826	21329826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:21329826G>A	uc001req.3	+	5	580	c.476G>A	c.(475-477)GGA>GAA	p.G159E		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	159	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	GAGATAGTGGGAAAAGGTAAG	0.259													6	37					0	0	0.001984	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21349913	21349913	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:21349913G>A	uc001req.3	+	8	865	c.761G>A	c.(760-762)TGG>TAG	p.W254*		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	254	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	GATTCTCGATGGGTTGGAGCT	0.358													15	67					0	0	0.003163	0	0
SOX5	6660	broad.mit.edu	37	12	23893968	23893968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:23893968G>A	uc001rfw.2	-	5	676	c.574C>T	c.(574-576)CCC>TCC	p.P192S	SOX5_uc001rfx.2_Missense_Mutation_p.P179S|SOX5_uc001rfy.2_Missense_Mutation_p.P179S|SOX5_uc010siv.1_Missense_Mutation_p.P179S|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Missense_Mutation_p.P144S	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	192					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						AAGCTCTCGGGAGTCCCTACA	0.418													5	35					0	0	0.000602	0	0
CASC1	55259	broad.mit.edu	37	12	25267700	25267700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:25267700C>T	uc001rgl.2	-	12	1565	c.1483G>A	c.(1483-1485)GAT>AAT	p.D495N	CASC1_uc001rgk.2_Missense_Mutation_p.D501N|CASC1_uc001rgm.3_Missense_Mutation_p.D559N|CASC1_uc001rgj.2_Missense_Mutation_p.D455N|CASC1_uc010sje.1_Missense_Mutation_p.D436N|CASC1_uc010sjf.1_Missense_Mutation_p.D383N|CASC1_uc010sjg.1_3'UTR	NM_001082973	NP_001076442	Q6TDU7	CASC1_HUMAN	cancer susceptibility candidate 1 isoform b	495										ovary(2)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Melanoma(3;0.0301)|Colorectal(261;0.11)		OV - Ovarian serous cystadenocarcinoma(3;7.42e-20)|Epithelial(3;7.58e-16)|all cancers(3;1.07e-13)			ATATGAGCATCTTGAATCAAG	0.383													10	50					0	0	0.006214	0	0
SYT10	341359	broad.mit.edu	37	12	33532766	33532766	+	Splice_Site	SNP	C	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:33532766C>A	uc001rll.1	-	6	1797	c.1500_splice	c.e6+1	p.E500_splice	SYT10_uc009zju.1_Splice_Site_p.E310_splice	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X							cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					CACAAGCTTACCTCCAGCAAT	0.418													18	65					1.87028e-06	2.11138e-06	0.001882	1	0
IRAK4	51135	broad.mit.edu	37	12	44176257	44176257	+	Silent	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:44176257A>G	uc001rnu.3	+	10	1219	c.1089A>G	c.(1087-1089)GAA>GAG	p.E363E	IRAK4_uc001rnt.3_Silent_p.E363E|IRAK4_uc001rnx.3_Silent_p.E239E|IRAK4_uc001rny.3_Silent_p.E239E|IRAK4_uc010sky.1_Silent_p.E239E|IRAK4_uc001rnv.3_Silent_p.E239E|IRAK4_uc001rnw.3_Silent_p.E239E	NM_001114182	NP_001107654	Q9NWZ3	IRAK4_HUMAN	interleukin-1 receptor-associated kinase 4	363	Protein kinase.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity				0	all_cancers(12;0.00149)	Lung NSC(34;0.0804)|all_lung(34;0.181)		GBM - Glioblastoma multiforme(48;0.04)		TGCGTGGAGAAATAACACCCA	0.388													5	44					0	0	0.000602	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45458979	45458979	+	RNA	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:45458979C>T	uc001rol.2	-	1		c.216G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						CCTTGTATTTCCCCAGCTCAT	0.433													4	14					0	0	0.000602	0	0
ARID2	196528	broad.mit.edu	37	12	46230613	46230613	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:46230613C>T	uc001ros.1	+	8	862	c.862C>T	c.(862-864)CAG>TAG	p.Q288*	ARID2_uc001ror.2_Nonsense_Mutation_p.Q288*|ARID2_uc009zkg.1_5'UTR|ARID2_uc009zkh.1_5'Flank|ARID2_uc001rot.1_5'UTR	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	288					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		GCGGGTACTTCAGATTGCAGT	0.418													14	60					0	0	0.002450	0	0
FAM113B	91523	broad.mit.edu	37	12	47629132	47629132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:47629132C>T	uc001rpn.2	+	4	1017	c.286C>T	c.(286-288)CGC>TGC	p.R96C	FAM113B_uc010slj.1_Intron|FAM113B_uc001rpq.2_Missense_Mutation_p.R96C	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	96							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					CTTCCTCACCCGCGTGTACTC	0.597													20	128					0	0	0.001882	0	0
COL2A1	1280	broad.mit.edu	37	12	48369372	48369372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:48369372G>A	uc001rqu.2	-	51	3795	c.3614C>T	c.(3613-3615)CCT>CTT	p.P1205L	COL2A1_uc001rqt.2_5'UTR|COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.P1136L	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	1205	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	AGGGGGTCCAGGATTTCCAGG	0.597													4	40					0	0	0.001168	0	0
C12orf54	121273	broad.mit.edu	37	12	48880471	48880471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:48880471G>A	uc001rrr.2	+	3	154	c.97G>A	c.(97-99)GAA>AAA	p.E33K	C12orf54_uc009zky.1_RNA	NM_152319	NP_689532	Q6X4T0	CL054_HUMAN	hypothetical protein LOC121273	33											0						ATTTCTACAGGAAAAACAGGT	0.438													3	13					0	0	0.000248	0	0
CCDC65	85478	broad.mit.edu	37	12	49312592	49312592	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:49312592G>A	uc001rso.2	+	6	1159	c.932G>A	c.(931-933)AGA>AAA	p.R311K		NM_033124	NP_149115	Q8IXS2	CCD65_HUMAN	coiled-coil domain containing 65	311										ovary(1)|skin(1)	2						AAGGCCCAAAGAACTCAGGCC	0.468													6	40					0	0	0.001984	0	0
BCDIN3D	144233	broad.mit.edu	37	12	50232712	50232712	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:50232712G>A	uc001rvh.2	-	2	363	c.321C>T	c.(319-321)CTC>CTT	p.L107L	LOC100286844_uc010smm.1_Intron|LOC100286844_uc001rvg.2_RNA|LOC100286844_uc010smn.1_RNA	NM_181708	NP_859059	Q7Z5W3	BN3D2_HUMAN	BCDIN3 domain containing	107	Bin3-type SAM.						methyltransferase activity			ovary(1)	1						TGTCGCAGCAGAGGAGACGGA	0.483											OREG0021805	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	48					0	0	0.001368	0	0
SOAT2	8435	broad.mit.edu	37	12	53517624	53517624	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:53517624G>A	uc001sbv.2	+	14	1573	c.1485G>A	c.(1483-1485)GAG>GAA	p.E495E	SOAT2_uc009zms.2_RNA	NM_003578	NP_003569	O75908	SOAT2_HUMAN	acyl-CoA:cholesterol acyltransferase 2	495					cholesterol efflux|cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|macrophage derived foam cell differentiation|very-low-density lipoprotein particle assembly	brush border|endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol binding|cholesterol O-acyltransferase activity|fatty-acyl-CoA binding			ovary(1)	1						ACTGCCAGGAGTGGTACGCAC	0.602													11	41					0	0	0.008291	0	0
CALCOCO1	57658	broad.mit.edu	37	12	54118921	54118921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:54118921G>A	uc001sef.2	-	2	250	c.106C>T	c.(106-108)CTT>TTT	p.L36F	CALCOCO1_uc010som.1_Missense_Mutation_p.L36F|CALCOCO1_uc010son.1_5'UTR|CALCOCO1_uc001seh.2_Missense_Mutation_p.L36F|CALCOCO1_uc009znd.2_Missense_Mutation_p.L36F|CALCOCO1_uc001seg.2_5'UTR|CALCOCO1_uc010soo.1_Missense_Mutation_p.L36F	NM_020898	NP_065949	Q9P1Z2	CACO1_HUMAN	coiled-coil transcriptional coactivator isoform	36	N-terminal AD (CTNNB1 binding site) (By similarity).				steroid hormone receptor signaling pathway|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm	armadillo repeat domain binding|beta-catenin binding|ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|sequence-specific DNA binding|transcription regulatory region DNA binding			ovary(1)	1						CCTGGGGGAAGGGTGTAGTGA	0.537													14	62					0	0	0.003163	0	0
HOXC5	3222	broad.mit.edu	37	12	54427123	54427123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:54427123C>T	uc001sew.2	+	1	292	c.217C>T	c.(217-219)CGC>TGC	p.R73C	HOXC5_uc001set.2_Intron|HOXC4_uc001seu.2_Intron|MIR615_hsa-mir-615|MI0003628_5'Flank	NM_018953	NP_061826	Q00444	HXC5_HUMAN	homeobox C5	73					regulation of transcription from RNA polymerase II promoter	cell junction|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TCACCCCGACCGCCCCGCCTG	0.687													7	24					0	0	0.003080	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54926004	54926004	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:54926004G>A	uc001sgc.3	+	26	2911	c.2832G>A	c.(2830-2832)AAG>AAA	p.K944K	NCKAP1L_uc010sox.1_Silent_p.K486K|NCKAP1L_uc010soy.1_Silent_p.K894K	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	944					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						AGTGCTTGAAGGAGTTTGTCA	0.438													7	56					0	0	0.004482	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420919	55420919	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:55420919G>A	uc001sgp.3	+	2	1074	c.696G>A	c.(694-696)TTG>TTA	p.L232L		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	232					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						TCAAGAGTTTGGGAGAATCGT	0.517													11	56					0	0	0.001368	0	0
OR6C3	254786	broad.mit.edu	37	12	55725574	55725574	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:55725574C>T	uc010spj.1	+	1	90	c.90C>T	c.(88-90)ATC>ATT	p.I30I		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTTTATTTATCACGTATATAT	0.418													17	94					0	0	0.004990	0	0
OR6C65	403282	broad.mit.edu	37	12	55794670	55794670	+	Missense_Mutation	SNP	C	T	T	rs146463326		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:55794670C>T	uc010spl.1	+	1	358	c.358C>T	c.(358-360)CGC>TGC	p.R120C		NM_001005518	NP_001005518	A6NJZ3	O6C65_HUMAN	olfactory receptor, family 6, subfamily C,	120	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTCTTATGATCGCTATGTGGC	0.383													24	89					0	0	0.005443	0	0
ITGA7	3679	broad.mit.edu	37	12	56090778	56090778	+	Missense_Mutation	SNP	G	A	A	rs146411608	by1000genomes	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:56090778G>A	uc001shh.2	-	12	1874	c.1654C>T	c.(1654-1656)CGT>TGT	p.R552C	ITGA7_uc001shg.2_Missense_Mutation_p.R548C|ITGA7_uc010sps.1_Missense_Mutation_p.R455C|ITGA7_uc009znw.2_5'Flank|ITGA7_uc009znx.2_Missense_Mutation_p.R429C	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	592	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						TCCAGGTTACGGCTCAGGAAC	0.617													8	40					0	0	0.003080	0	0
LRP1	4035	broad.mit.edu	37	12	57570936	57570936	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:57570936C>T	uc001snd.2	+	25	4570	c.4104C>T	c.(4102-4104)ATC>ATT	p.I1368I		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1368	Extracellular (Potential).|LDL-receptor class B 9.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	TGGATCAGATCGAGGTGGCCA	0.612													9	52					0	0	0.004482	0	0
C12orf56	115749	broad.mit.edu	37	12	64746779	64746779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:64746779G>A	uc001ssa.3	-	2	310	c.310C>T	c.(310-312)CGT>TGT	p.R104C	uc001srx.2_Intron	NM_001099676	NP_001093146	Q8IXR9	CL056_HUMAN	hypothetical protein LOC115749	104											0			GBM - Glioblastoma multiforme(3;0.000582)	GBM - Glioblastoma multiforme(28;0.0259)		TAGATGATACGAATGTGTTGG	0.328													27	76					0	0	0.007291	0	0
TRHDE	29953	broad.mit.edu	37	12	73046155	73046155	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:73046155A>C	uc001sxa.2	+	16	2624	c.2594A>C	c.(2593-2595)GAT>GCT	p.D865A		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	865	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TCACTACTGGATGAGGATGTC	0.383													8	60					0	0	0.003080	0	0
KITLG	4254	broad.mit.edu	37	12	88900815	88900815	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:88900815A>G	uc001tav.2	-	7	887	c.704T>C	c.(703-705)TTA>TCA	p.L235S	KITLG_uc009zsn.2_Intron|KITLG_uc001taw.2_Missense_Mutation_p.L207S|KITLG_uc009zso.1_RNA	NM_000899	NP_000890	P21583	SCF_HUMAN	KIT ligand isoform b precursor	235	Helical; (Potential).				cell adhesion|cell proliferation|hemopoiesis|male gonad development|positive regulation of DNA replication|signal transduction	cytoplasm|cytoskeleton|integral to membrane|plasma membrane	growth factor activity|identical protein binding|stem cell factor receptor binding			ovary(1)	1						CTTCCAGTATAAGGCTCCAAA	0.388									Testicular_Cancer_Familial_Clustering_of				17	61					0	0	0.008871	0	0
FGD6	55785	broad.mit.edu	37	12	95603226	95603226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:95603226C>T	uc001tdp.3	-	2	2058	c.1834G>A	c.(1834-1836)GAA>AAA	p.E612K	FGD6_uc009zsx.2_Intron	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	612					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						GTGCACTTTTCCACATCCATA	0.413													27	119					0	0	0.006320	0	0
C12orf63	374467	broad.mit.edu	37	12	97043723	97043723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:97043723C>T	uc001tet.1	+	2	98	c.20C>T	c.(19-21)TCC>TTC	p.S7F		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	7										skin(6)|ovary(1)	7						GAAAATATGTCCAAGACACAA	0.303													5	36					0	0	0.000602	0	0
C12orf63	374467	broad.mit.edu	37	12	97133744	97133744	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:97133744G>A	uc001tet.1	+	18	2329	c.2251G>A	c.(2251-2253)GTA>ATA	p.V751I		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	751										skin(6)|ovary(1)	7						TGCTGCAATAGTATTTTCTAC	0.284													4	30					0	0	0.000248	0	0
MYBPC1	4604	broad.mit.edu	37	12	102041880	102041880	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:102041880G>C	uc001tii.2	+	12	1175	c.1073G>C	c.(1072-1074)AGA>ACA	p.R358T	MYBPC1_uc001tif.1_Missense_Mutation_p.R371T|MYBPC1_uc001tig.2_Missense_Mutation_p.R383T|MYBPC1_uc010svq.1_Missense_Mutation_p.R345T|MYBPC1_uc001tih.2_Missense_Mutation_p.R383T|MYBPC1_uc001tij.2_Missense_Mutation_p.R358T|MYBPC1_uc010svr.1_Missense_Mutation_p.R358T|MYBPC1_uc010svs.1_Missense_Mutation_p.R358T|MYBPC1_uc010svt.1_Missense_Mutation_p.R346T|MYBPC1_uc010svu.1_Missense_Mutation_p.R339T|MYBPC1_uc001tik.2_Missense_Mutation_p.R332T	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	358	Ig-like C2-type 3.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						TGTGGGGAGAGAGTGGAATTA	0.338													12	52					0	0	0.002450	0	0
SELPLG	6404	broad.mit.edu	37	12	109017969	109017969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:109017969C>T	uc001tni.2	-	2	275	c.115G>A	c.(115-117)GAC>AAC	p.D39N	SELPLG_uc001tnh.2_Missense_Mutation_p.D39N|SELPLG_uc010sxe.1_Missense_Mutation_p.D55N	NM_003006	NP_002997	Q14242	SELPL_HUMAN	selectin P ligand	39	Extracellular (Potential).			Missing (in Ref. 3; BAC05283).	blood coagulation|cellular response to interleukin-6	integral to plasma membrane|membrane fraction	bacterial cell surface binding|receptor binding				0						TGTCTCCGGTCCCGGGCAAGC	0.572													13	53					0	0	0.003163	0	0
C12orf51	283450	broad.mit.edu	37	12	112607316	112607316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:112607316G>A	uc009zwc.2	-	63	10951	c.10933C>T	c.(10933-10935)CAT>TAT	p.H3645Y		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						CTGGTGCCATGGACCTCCTCG	0.617													4	15					0	0	0.000248	0	0
C12orf51	283450	broad.mit.edu	37	12	112699194	112699194	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:112699194G>A	uc009zwc.2	-	11	1510	c.1492C>T	c.(1492-1494)CTG>TTG	p.L498L	C12orf51_uc010syk.1_Silent_p.L321L|C12orf51_uc001tts.2_Silent_p.L321L|C12orf51_uc001ttt.3_Silent_p.L319L	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						CATCCAGTCAGGATTTGGGTG	0.413													21	69					0	0	0.003330	0	0
OAS3	4940	broad.mit.edu	37	12	113405251	113405251	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:113405251C>T	uc001tug.2	+	13	2805	c.2718C>T	c.(2716-2718)AGC>AGT	p.S906S		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	906	OAS domain 3.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						CCAGGCCCAGCTCTCAAGTCT	0.572													3	10					0	0	0.004672	0	0
PSMD9	5715	broad.mit.edu	37	12	122337655	122337655	+	Silent	SNP	C	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:122337655C>A	uc001ubl.2	+	3	474	c.357C>A	c.(355-357)GCC>GCA	p.A119A	PSMD9_uc009zxj.2_RNA|PSMD9_uc001ubm.2_Silent_p.A119A	NM_002813	NP_002804	O00233	PSMD9_HUMAN	proteasome 26S non-ATPase subunit 9	119	PDZ.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of insulin secretion|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of insulin secretion|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|proteasome regulatory particle assembly|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	nucleus|proteasome regulatory particle	bHLH transcription factor binding|transcription coactivator activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000117)|Epithelial(86;0.000415)|BRCA - Breast invasive adenocarcinoma(302;0.231)		ACAAAGAGGCCATGAGCCGCA	0.642													12	47					9.31168e-06	1.05021e-05	0.001855	1	0
MLXIP	22877	broad.mit.edu	37	12	122622109	122622109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:122622109C>T	uc001ubq.2	+	12	2126	c.2126C>T	c.(2125-2127)TCC>TTC	p.S709F	MLXIP_uc001ubt.2_Missense_Mutation_p.S316F	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	709					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		TCAGGGAAATCCGACCCCAAA	0.567													18	105					0	0	0.008871	0	0
SCARB1	949	broad.mit.edu	37	12	125298774	125298774	+	Missense_Mutation	SNP	T	C	C	rs141478587		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:125298774T>C	uc001ugo.3	-	4	857	c.604A>G	c.(604-606)AAG>GAG	p.K202E	SCARB1_uc001ugn.3_Missense_Mutation_p.K202E|SCARB1_uc001ugm.3_Missense_Mutation_p.K202E|SCARB1_uc010tbd.1_Missense_Mutation_p.K202E|SCARB1_uc010tbe.1_Missense_Mutation_p.K161E|SCARB1_uc001ugp.3_Missense_Mutation_p.K202E	NM_005505	NP_005496	Q8WTV0	SCRB1_HUMAN	scavenger receptor class B, member 1 isoform 1	202	Extracellular (Potential).				adhesion to symbiont|cell adhesion|cholesterol efflux|cholesterol homeostasis|cholesterol import|detection of lipopolysaccharide|high-density lipoprotein particle clearance|high-density lipoprotein particle remodeling|lipopolysaccharide transport|lipoprotein metabolic process|positive regulation of cholesterol storage|positive regulation of endothelial cell migration|positive regulation of nitric-oxide synthase activity|recognition of apoptotic cell|reverse cholesterol transport|triglyceride homeostasis|wound healing	caveola	1-phosphatidylinositol binding|apolipoprotein A-I binding|high-density lipoprotein particle receptor activity|lipopolysaccharide receptor activity|low-density lipoprotein particle binding|phosphatidylserine binding|transporter activity			kidney(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000116)|Epithelial(86;0.000415)|all cancers(50;0.00395)	Phosphatidylserine(DB00144)	AACTTGTCCTTGAAGGGGAAC	0.527													15	89					0	0	0.004007	0	0
RIMBP2	23504	broad.mit.edu	37	12	130926716	130926716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:130926716G>A	uc001uil.2	-	8	1294	c.1130C>T	c.(1129-1131)TCG>TTG	p.S377L	RIMBP2_uc001uim.2_Missense_Mutation_p.S285L|RIMBP2_uc001uin.1_Missense_Mutation_p.S36L	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	377	Fibronectin type-III 1.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		CAGCTCATCCGAGCTGCCCCT	0.642													13	40					0	0	0.001368	0	0
MMP17	4326	broad.mit.edu	37	12	132323164	132323164	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:132323164C>T	uc001ujc.1	+	3	399	c.300C>T	c.(298-300)GCC>GCT	p.A100A	MMP17_uc001ujd.1_Silent_p.A16A	NM_016155	NP_057239	Q9ULZ9	MMP17_HUMAN	matrix metalloproteinase 17 preproprotein	100					proteolysis	anchored to membrane|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.82e-07)|Epithelial(86;1.51e-06)|all cancers(50;2.35e-05)		CAGACGAGGCCACCCTGGCCC	0.662													5	20					0	0	0.001168	0	0
ZNF268	10795	broad.mit.edu	37	12	133779296	133779296	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr12:133779296A>C	uc010tcf.1	+	6	1354	c.1024A>C	c.(1024-1026)AGT>CGT	p.S342R	ZNF268_uc010tbv.1_Missense_Mutation_p.S181R|ZNF268_uc010tbw.1_Missense_Mutation_p.S181R|ZNF268_uc010tbx.1_Missense_Mutation_p.S202R|ZNF268_uc010tby.1_Missense_Mutation_p.S181R|ZNF268_uc010tbz.1_Missense_Mutation_p.S181R|ZNF268_uc010tca.1_Missense_Mutation_p.S181R|ZNF268_uc010tcb.1_Missense_Mutation_p.S202R|ZNF268_uc010tcc.1_Missense_Mutation_p.S181R|ZNF268_uc010tcd.1_Missense_Mutation_p.S181R|ZNF268_uc010tce.1_Missense_Mutation_p.S181R|ZNF268_uc010tcg.1_Missense_Mutation_p.S181R|ZNF268_uc010tch.1_Missense_Mutation_p.S342R	NM_003415	NP_003406	Q14587	ZN268_HUMAN	zinc finger protein 268 isoform a	342	C2H2-type 3.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.000215)|all_epithelial(31;0.096)		OV - Ovarian serous cystadenocarcinoma(86;3.58e-08)|Epithelial(86;6.6e-07)|all cancers(50;2.28e-05)		GAAAACATTCAGTTTCCATTC	0.398													4	14					0	0	0.000248	0	0
LOC284232	284232	broad.mit.edu	37	13	19412860	19412860	+	RNA	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr13:19412860C>T	uc010tcj.1	-	1		c.33250G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ATGCATATTTCCTGTCTGAGT	0.284													15	80					0	0	0.003163	0	0
TUBA3C	7278	broad.mit.edu	37	13	19748188	19748188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr13:19748188G>A	uc009zzj.2	-	5	1217	c.1168C>T	c.(1168-1170)CGC>TGC	p.R390C		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	390					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		TGGTCCAGGCGAGCCCAGGCC	0.647													18	86					0	0	0.006122	0	0
RNF17	56163	broad.mit.edu	37	13	25370412	25370412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr13:25370412C>T	uc001upr.2	+	11	1419	c.1378C>T	c.(1378-1380)CCT>TCT	p.P460S	RNF17_uc010tdd.1_Missense_Mutation_p.P319S|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.P460S|RNF17_uc001ups.2_Missense_Mutation_p.P399S|RNF17_uc001upq.1_3'UTR	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	460					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		ACACCTTGATCCTTCAGACAT	0.323													16	62					0	0	0.003163	0	0
FLT1	2321	broad.mit.edu	37	13	28893576	28893576	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr13:28893576C>T	uc001usb.3	-	24	3555	c.3270G>A	c.(3268-3270)TGG>TGA	p.W1090*	FLT1_uc010aap.2_Nonsense_Mutation_p.W95*|FLT1_uc010aaq.2_Nonsense_Mutation_p.W215*|FLT1_uc001usa.3_Nonsense_Mutation_p.W308*	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	1090	Cytoplasmic (Potential).|Protein kinase.				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	AGAAGATTTCCCACAGCAATA	0.433													3	19					0	0	0.000248	0	0
NBEA	26960	broad.mit.edu	37	13	36124729	36124729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr13:36124729G>A	uc001uvb.2	+	42	6907	c.6701G>A	c.(6700-6702)CGA>CAA	p.R2234Q	NBEA_uc010abi.2_Missense_Mutation_p.R890Q|NBEA_uc010tee.1_Missense_Mutation_p.R27Q|NBEA_uc010tef.1_Missense_Mutation_p.R27Q|NBEA_uc010teg.1_Missense_Mutation_p.R27Q	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2234						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		ATGGCAAACCGAAGTAAGTCC	0.343													6	36					0	0	0.001168	0	0
POSTN	10631	broad.mit.edu	37	13	38153461	38153461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr13:38153461G>A	uc001uwo.3	-	13	1814	c.1696C>T	c.(1696-1698)CAC>TAC	p.H566Y	POSTN_uc010tet.1_Missense_Mutation_p.H94Y|POSTN_uc001uwp.3_Missense_Mutation_p.H566Y|POSTN_uc001uwr.2_Missense_Mutation_p.H566Y|POSTN_uc001uwq.2_Missense_Mutation_p.H566Y|POSTN_uc010teu.1_Missense_Mutation_p.H566Y|POSTN_uc010tev.1_Missense_Mutation_p.H566Y|POSTN_uc010tew.1_Missense_Mutation_p.H566Y|POSTN_uc010tex.1_Missense_Mutation_p.H481Y	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	566	FAS1 4.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		GGTGTCAGGTGATAAAGAATG	0.318													7	59					0	0	0.006214	0	0
TNFSF11	8600	broad.mit.edu	37	13	43180898	43180898	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr13:43180898G>A	uc001uyu.2	+	5	947	c.798G>A	c.(796-798)GGG>GGA	p.G266G	TNFSF11_uc001uyt.2_Silent_p.G193G	NM_003701	NP_003692	O14788	TNF11_HUMAN	tumor necrosis factor ligand superfamily, member	266	Extracellular (Potential).				immune response|monocyte chemotaxis|osteoclast differentiation|positive regulation of bone resorption|positive regulation of corticotropin-releasing hormone secretion|positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling|positive regulation of fever generation by positive regulation of prostaglandin secretion|positive regulation of homotypic cell-cell adhesion|positive regulation of NF-kappaB transcription factor activity|positive regulation of osteoclast differentiation|positive regulation of T cell activation	cytoplasm|extracellular space|integral to plasma membrane	cytokine activity|receptor activity|tumor necrosis factor receptor binding				0		Lung NSC(96;1.11e-05)|Breast(139;0.00868)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000249)|GBM - Glioblastoma multiforme(144;0.00119)|BRCA - Breast invasive adenocarcinoma(63;0.073)		ATTGGTCAGGGAATTCTGAAT	0.423													12	68					0	0	0.001368	0	0
ENOX1	55068	broad.mit.edu	37	13	43930157	43930157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr13:43930157G>A	uc001uza.3	-	8	1021	c.721C>T	c.(721-723)CAC>TAC	p.H241Y	ENOX1_uc001uzb.3_Missense_Mutation_p.H241Y|ENOX1_uc001uzc.3_Missense_Mutation_p.H241Y|ENOX1_uc001uyz.3_5'UTR|ENOX1_uc010tfm.1_Missense_Mutation_p.H54Y	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	241					electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		TTGCGCCGGTGCCGCTCCTCC	0.612													24	104					0	0	0.003330	0	0
KLHL1	57626	broad.mit.edu	37	13	70293705	70293705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr13:70293705G>A	uc001vip.2	-	9	2605	c.1811C>T	c.(1810-1812)TCA>TTA	p.S604L	KLHL1_uc010thm.1_Missense_Mutation_p.S543L	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	604	Kelch 4.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		ACCTCCAACTGAATACAACCT	0.333													6	31					0	0	0.003080	0	0
DACH1	1602	broad.mit.edu	37	13	72255957	72255957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr13:72255957G>A	uc010thn.1	-	3	1357	c.934C>T	c.(934-936)CTC>TTC	p.L312F	DACH1_uc010tho.1_Missense_Mutation_p.L312F|DACH1_uc010thp.1_Missense_Mutation_p.L312F	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	312	Interaction with SIX6 and HDAC3 (By similarity).				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		GGAGACATGAGACCAGGGACA	0.428													16	61					0	0	0.007413	0	0
RNF219	79596	broad.mit.edu	37	13	79191042	79191042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr13:79191042C>T	uc001vkw.1	-	6	913	c.854G>A	c.(853-855)AGT>AAT	p.S285N	uc001vku.1_RNA|RNF219_uc010afb.1_Missense_Mutation_p.S95N|RNF219_uc010afc.2_Intron	NM_024546	NP_078822	Q5W0B1	RN219_HUMAN	ring finger protein 219	285							zinc ion binding			large_intestine(2)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.0414)		ATCCTCCTCACTGCCTTTGCT	0.483													10	68					0	0	0.006214	0	0
SLITRK6	84189	broad.mit.edu	37	13	86368845	86368845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr13:86368845G>A	uc001vll.1	-	2	2258	c.1799C>T	c.(1798-1800)TCT>TTT	p.S600F	SLITRK6_uc010afe.1_Intron	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	600	Extracellular (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		GTCCGTAAGAGATCGTAAAAT	0.418													12	53					0	0	0.001855	0	0
OXGR1	27199	broad.mit.edu	37	13	97639629	97639629	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr13:97639629T>G	uc001vmx.1	-	4	629	c.385A>C	c.(385-387)ATC>CTC	p.I129L	OXGR1_uc010afr.1_Missense_Mutation_p.I129L	NM_080818	NP_543008	Q96P68	OXGR1_HUMAN	oxoglutarate (alpha-ketoglutarate) receptor 1	129	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.186)			TAGCGGAAGATGCTGAAACAG	0.448													7	20					0	0	0.001984	0	0
MYO16	23026	broad.mit.edu	37	13	109859073	109859073	+	Silent	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr13:109859073T>C	uc001vqt.1	+	35	5592	c.5466T>C	c.(5464-5466)GCT>GCC	p.A1822A	MYO16_uc010agk.1_Silent_p.A1844A	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1822					cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			TGCACCACGCTGAGCCCAGGG	0.602													12	43					0	0	0.000978	0	0
F10	2159	broad.mit.edu	37	13	113795286	113795286	+	Missense_Mutation	SNP	G	A	A	rs61753266	byFrequency	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr13:113795286G>A	uc001vsx.2	+	5	481	c.424G>A	c.(424-426)GAG>AAG	p.E142K	F10_uc010agq.1_RNA|F10_uc001vsy.2_Missense_Mutation_p.E142K|F10_uc001vsz.2_Missense_Mutation_p.E142K	NM_000504	NP_000495	P00742	FA10_HUMAN	coagulation factor X preproprotein	142	EGF-like 2.		E -> K (in FA10D; uncertain pathological significance; detected in patients carrying K-54 or P-374; slightly reduced activity).		blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of cell migration|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|phospholipid binding|protein binding|serine-type endopeptidase activity			pancreas(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.113)|all_lung(25;0.0364)|all_epithelial(44;0.0373)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0805)|Epithelial(84;0.231)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Enoxaparin(DB01225)|Heparin(DB01109)|Menadione(DB00170)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTTCTGCCACGAGGAACAGAA	0.612													14	69					0	0	0.003163	0	0
CUL4A	8451	broad.mit.edu	37	13	113909011	113909011	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr13:113909011A>G	uc010tjy.1	+	18	1768	c.1757A>G	c.(1756-1758)AAG>AGG	p.K586R	CUL4A_uc010tjx.1_Missense_Mutation_p.K486R|CUL4A_uc010agu.2_Missense_Mutation_p.K447R|CUL4A_uc010tjz.1_Missense_Mutation_p.K265R	NM_001008895	NP_001008895	Q13619	CUL4A_HUMAN	cullin 4A isoform 1	586					cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	ubiquitin protein ligase binding			central_nervous_system(2)|skin(1)	3	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0482)|all_epithelial(44;0.0148)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.112)			TTCCAGGGGAAGAAGGAATTC	0.438													15	100					0	0	0.004990	0	0
FLJ10357	55701	broad.mit.edu	37	14	21550559	21550559	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:21550559C>T	uc001vzp.2	+	15	3437	c.3408C>T	c.(3406-3408)TTC>TTT	p.F1136F	FLJ10357_uc001vzo.1_Silent_p.F215F|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_Silent_p.F422F	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	1136	DH.				regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		TTCGCAGCTTCCACCGGACAC	0.652													4	38					0	0	0.000248	0	0
TOX4	9878	broad.mit.edu	37	14	21960465	21960465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:21960465G>A	uc001waz.2	+	6	924	c.821G>A	c.(820-822)AGG>AAG	p.R274K	TOX4_uc001way.2_Missense_Mutation_p.R144K|TOX4_uc001wba.2_RNA|TOX4_uc010tlu.1_Missense_Mutation_p.R251K|TOX4_uc010tlv.1_Missense_Mutation_p.R144K	NM_014828	NP_055643	O94842	TOX4_HUMAN	epidermal Langerhans cell protein LCP1	274	HMG box.					chromatin|nucleus|PTW/PP1 phosphatase complex	DNA binding|protein binding			ovary(1)	1	all_cancers(95;0.000465)		Epithelial(56;6.61e-06)|all cancers(55;5.15e-05)	GBM - Glioblastoma multiforme(265;0.0149)		GTATATAAGAGGAAAACTGAG	0.358													15	50					0	0	0.003163	0	0
Unknown	0	broad.mit.edu	37	14	22180939	22180939	+	RNA	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:22180939C>T	uc010tme.1	+	3		c.258C>T			uc001wbm.2_Missense_Mutation_p.L71F					Homo sapiens mRNA for T cell receptor alpha variable 2, partial cds, clone: SEB 280.																		ACCAAGACTCCTTGTTAAAGG	0.502													33	189					0	0	0.006230	0	0
Unknown	0	broad.mit.edu	37	14	22180973	22180973	+	RNA	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:22180973G>A	uc010tme.1	+	3		c.292G>A			uc001wbm.2_Missense_Mutation_p.R82Q					Homo sapiens mRNA for T cell receptor alpha variable 2, partial cds, clone: SEB 280.																		CAGCAGGGACGATACAACATG	0.512													38	151					0	0	0.007835	0	0
ABHD4	63874	broad.mit.edu	37	14	23078744	23078744	+	Silent	SNP	C	T	T	rs150961383	byFrequency	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:23078744C>T	uc001wgm.2	+	6	936	c.867C>T	c.(865-867)TCC>TCT	p.S289S	ABHD4_uc010tna.1_3'UTR|ABHD4_uc010tnb.1_RNA	NM_022060	NP_071343	Q8TB40	ABHD4_HUMAN	abhydrolase domain containing 4	289					lipid catabolic process		hydrolase activity			central_nervous_system(1)	1	all_cancers(95;5.49e-05)			GBM - Glioblastoma multiforme(265;0.0153)		TCTACGGGTCCGACACCTGGA	0.517													19	51					0	0	0.007413	0	0
MYH7	4625	broad.mit.edu	37	14	23888698	23888698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:23888698C>T	uc001wjx.2	-	28	3953	c.3847G>A	c.(3847-3849)GAG>AAG	p.E1283K	MIR208B_hsa-mir-208b|MI0005570_5'Flank	NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1283	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TCACCATTCTCGGTTTGCAAC	0.607													35	86					0	0	0.004878	0	0
LRRC16B	90668	broad.mit.edu	37	14	24534935	24534935	+	Silent	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:24534935T>C	uc001wlj.2	+	34	3658	c.3501T>C	c.(3499-3501)GGT>GGC	p.G1167G	LRRC16B_uc001wlk.2_Intron	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	1167										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		GAGCCAAGGGTTGGAGCTTCG	0.622													22	82					0	0	0.002780	0	0
NOVA1	4857	broad.mit.edu	37	14	26917661	26917661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:26917661C>T	uc001wpy.2	-	5	1346	c.1028G>A	c.(1027-1029)GGG>GAG	p.G343E	NOVA1_uc001wpz.2_Missense_Mutation_p.G319E|NOVA1_uc001wqa.2_Missense_Mutation_p.G221E	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	346	Ala-rich.				locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		agccaaagcccctgttgctgc	0.318													5	15					0	0	0.000602	0	0
NKX2-1	7080	broad.mit.edu	37	14	36988476	36988476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:36988476C>T	uc001wtt.2	-	1	428	c.87G>A	c.(85-87)ATG>ATA	p.M29I	SFTA3_uc001wts.2_Intron|NKX2-1_uc001wtu.2_Missense_Mutation_p.M59I|NKX2-1_uc001wtv.2_Missense_Mutation_p.M29I|uc001wtw.1_5'Flank	NM_003317	NP_003308	P43699	NKX21_HUMAN	thyroid transcription factor 1 isoform 2	29					epithelial tube branching involved in lung morphogenesis|globus pallidus development|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|thyroid gland development		protein binding|transcription regulatory region DNA binding			skin(1)	1	all_cancers(3;4.47e-51)|Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)|Breast(36;0.165)		Lung(8;1.8e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.014)|all cancers(34;0.0366)|LUSC - Lung squamous cell carcinoma(13;0.132)	GBM - Glioblastoma multiforme(112;0.0171)		CGCCGCCCTCCATGCCCACTT	0.667			A		NSCLC								5	19					0	0	0.001168	0	0
MGAT2	4247	broad.mit.edu	37	14	50089057	50089057	+	Silent	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:50089057T>C	uc001wwr.2	+	1	1569	c.1071T>C	c.(1069-1071)TGT>TGC	p.C357C	SDCCAG1_uc010anj.1_Intron|RPL36AL_uc001wwq.1_5'Flank	NM_002408	NP_002399	Q10469	MGAT2_HUMAN	mannosyl (alpha-1,6-)-glycoprotein	357	Lumenal (Potential).				oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity				0	all_epithelial(31;0.0021)|Breast(41;0.0124)					CTGTATCTTGTCTTCCAAAAT	0.433													15	84					0	0	0.004007	0	0
TBPL2	387332	broad.mit.edu	37	14	55902631	55902631	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:55902631G>A	uc001xby.2	-	3	630	c.630C>T	c.(628-630)AAC>AAT	p.N210N		NM_199047	NP_950248	Q6SJ96	TBPL2_HUMAN	TATA box binding protein like 2	210					multicellular organismal development|transcription initiation from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding				0						TACAGGCCAGGTTTACAGTGG	0.299													6	44					0	0	0.003080	0	0
NAA30	122830	broad.mit.edu	37	14	57876110	57876110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:57876110C>T	uc001xcx.3	+	5	1119	c.965C>T	c.(964-966)ACC>ATC	p.T322I	NAA30_uc010trk.1_Missense_Mutation_p.T64I|NAA30_uc010aow.2_RNA	NM_001011713	NP_001011713	Q147X3	NAA30_HUMAN	N-acetyltransferase 12	322	N-acetyltransferase.					cytoplasm	peptide alpha-N-acetyltransferase activity			skin(1)	1						GTTTTGGAAACCGAAATAACA	0.259													5	23					0	0	0.000602	0	0
KIAA0586	9786	broad.mit.edu	37	14	58955384	58955384	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:58955384C>T	uc001xdv.3	+	23	3618	c.3345C>T	c.(3343-3345)TTC>TTT	p.F1115F	KIAA0586_uc010trr.1_Silent_p.F1232F|KIAA0586_uc001xdt.3_Silent_p.F1147F|KIAA0586_uc001xdu.3_Silent_p.F1176F|KIAA0586_uc010trs.1_Silent_p.F1106F|KIAA0586_uc010trt.1_Silent_p.F1051F	NM_014749	NP_055564	E9PGW8	E9PGW8_HUMAN	talpid3 protein	1115										ovary(1)	1						GTATGGATTTCCCTGCTCAGC	0.483													15	44					0	0	0.004007	0	0
C14orf39	317761	broad.mit.edu	37	14	60921816	60921816	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:60921816G>A	uc001xez.3	-	16	1516	c.1406C>T	c.(1405-1407)TCC>TTC	p.S469F	C14orf39_uc010apo.2_Missense_Mutation_p.S180F	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	469										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		AAGTCCAGGGGATTCCTTTTC	0.294													10	58					0	0	0.008291	0	0
SPTB	6710	broad.mit.edu	37	14	65260425	65260425	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:65260425C>T	uc001xht.2	-	13	2010	c.1956G>A	c.(1954-1956)TGG>TGA	p.W652*	SPTB_uc001xhr.2_Nonsense_Mutation_p.W652*|SPTB_uc001xhs.2_Nonsense_Mutation_p.W652*|SPTB_uc001xhu.2_Nonsense_Mutation_p.W652*	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	652	Spectrin 4.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TCTCCTTGATCCAGCTCTCAG	0.537													10	45					0	0	0.006214	0	0
PIGH	5283	broad.mit.edu	37	14	68060610	68060610	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:68060610G>A	uc001xjr.1	-	2	337	c.240C>T	c.(238-240)CTC>CTT	p.L80L	PIGH_uc010tsy.1_Silent_p.L80L	NM_004569	NP_004560	Q14442	PIGH_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	80					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|mitochondrion|nucleolus	phosphatidylinositol N-acetylglucosaminyltransferase activity			ovary(1)	1				all cancers(60;0.000592)|OV - Ovarian serous cystadenocarcinoma(108;0.00395)|BRCA - Breast invasive adenocarcinoma(234;0.00933)		TCACAAAATGGAGATAACCAA	0.433													5	17					0	0	0.001168	0	0
SLC8A3	6547	broad.mit.edu	37	14	70635068	70635068	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:70635068G>A	uc001xly.2	-	2	826	c.72C>T	c.(70-72)TTC>TTT	p.F24F	SLC8A3_uc001xlw.2_Silent_p.F24F|SLC8A3_uc001xlx.2_Silent_p.F24F|SLC8A3_uc001xlz.2_Silent_p.F24F|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	24					cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		GACCATTCAGGAAGAGCACAA	0.552													7	21					0	0	0.001984	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72190579	72190579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:72190579C>T	uc001xms.2	+	16	4835	c.4487C>T	c.(4486-4488)TCC>TTC	p.S1496F	SIPA1L1_uc001xmt.2_Missense_Mutation_p.S1475F|SIPA1L1_uc001xmu.2_Missense_Mutation_p.S1475F|SIPA1L1_uc001xmv.2_Missense_Mutation_p.S1496F|SIPA1L1_uc010ttm.1_Missense_Mutation_p.S950F|SIPA1L1_uc001xmw.2_Missense_Mutation_p.S261F	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1496					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		ACCATAAACTCCGTGGGATTT	0.428													21	76					0	0	0.001523	0	0
NRXN3	9369	broad.mit.edu	37	14	79270138	79270139	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:79270138_79270139GG>AA	uc001xun.2	+	6	1592_1593	c.1101_1102GG>AA	c.(1099-1104)GGGGGG>GGAAGG	p.G368R	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.G502R	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	741	Laminin G-like 4.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity	p.G368R(1)		ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		AGCTGGATGGGGGGCGTGTCAA	0.535													4	37					0	0	0.004672	0	0
C14orf145	145508	broad.mit.edu	37	14	81382795	81382795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:81382795G>A	uc001xux.2	-	2	268	c.97C>T	c.(97-99)CCT>TCT	p.P33S	C14orf145_uc001xuz.2_Missense_Mutation_p.P33S|C14orf145_uc001xva.1_Missense_Mutation_p.P33S|C14orf145_uc010ata.1_Missense_Mutation_p.P33S	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	33						centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		TCTACTGTAGGAAGACTTCGA	0.428													12	35					0	0	0.001368	0	0
KIAA1409	57578	broad.mit.edu	37	14	94044256	94044256	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:94044256C>T	uc001ybv.1	+	15	1832	c.1749C>T	c.(1747-1749)TTC>TTT	p.F583F	KIAA1409_uc001ybs.1_Silent_p.F583F	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	760						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		ATAGTCCTTTCCAGAGTCCGT	0.453													40	150					0	0	0.002522	0	0
SERPINA3	12	broad.mit.edu	37	14	95088707	95088707	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:95088707T>A	uc001ydp.2	+	4	1026	c.947T>A	c.(946-948)TTT>TAT	p.F316Y	SERPINA3_uc001ydo.3_Missense_Mutation_p.F341Y|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Missense_Mutation_p.F316Y|SERPINA3_uc001yds.2_Missense_Mutation_p.F316Y|SERPINA3_uc010avg.2_Missense_Mutation_p.F316Y	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	316					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		CTGCCAAAGTTTTCCATCTCG	0.507													20	47					0	0	0.003330	0	0
DICER1	23405	broad.mit.edu	37	14	95569702	95569702	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:95569702G>A	uc001ydw.2	-	22	4213	c.4031C>T	c.(4030-4032)TCA>TTA	p.S1344L	DICER1_uc010avh.1_Missense_Mutation_p.S242L|DICER1_uc001ydv.2_Missense_Mutation_p.S1334L|DICER1_uc001ydx.2_Missense_Mutation_p.S1344L|DICER1_uc001ydy.1_Missense_Mutation_p.S196L	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	1344	RNase III 1.				negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		TCTCATATATGAAAGGCGGCC	0.413			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				9	38					0	0	0.008291	0	0
PPP2R5C	5527	broad.mit.edu	37	14	102359354	102359354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:102359354C>T	uc001yko.2	+	7	847	c.707C>T	c.(706-708)GCC>GTC	p.A236V	PPP2R5C_uc010txr.1_Missense_Mutation_p.A267V|PPP2R5C_uc001ykk.2_Missense_Mutation_p.A291V|PPP2R5C_uc010txt.1_Missense_Mutation_p.A226V|PPP2R5C_uc001ykn.2_Missense_Mutation_p.A236V|PPP2R5C_uc001ykp.2_Missense_Mutation_p.A236V|PPP2R5C_uc001ykq.2_Missense_Mutation_p.A134V	NM_002719	NP_002710	Q13362	2A5G_HUMAN	gamma isoform of regulatory subunit B56, protein	236					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|negative regulation of cell proliferation|proteasomal ubiquitin-dependent protein catabolic process|signal transduction	chromosome, centromeric region|nucleus|protein phosphatase type 2A complex	protein binding|protein binding|protein phosphatase type 2A regulator activity|protein phosphatase type 2A regulator activity			ovary(1)|breast(1)	2						AATGGATTTGCCTTACCACTA	0.343													8	30					0	0	0.003080	0	0
AHNAK2	113146	broad.mit.edu	37	14	105411484	105411484	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr14:105411484G>A	uc010axc.1	-	7	10424	c.10304C>T	c.(10303-10305)TCT>TTT	p.S3435F	AHNAK2_uc001ypx.2_Missense_Mutation_p.S3335F	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3435						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCTGGGCAGAGACACCTCCAC	0.632													33	117					0	0	0.002836	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413731	22413731	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:22413731G>A	uc001yuf.2	+	1	30	c.30G>A	c.(28-30)AAG>AAA	p.K10K		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						CTGAGAAGAAGGTAATCTCCT	0.502													20	194					0	0	0.001523	0	0
SCG5	6447	broad.mit.edu	37	15	32935926	32935926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:32935926C>T	uc001zha.2	+	2	250	c.133C>T	c.(133-135)CAT>TAT	p.H45Y	SCG5_uc001zgz.2_Missense_Mutation_p.H45Y	NM_001144757	NP_001138229	P05408	7B2_HUMAN	secretogranin V isoform 1	45					intracellular protein transport|neuropeptide signaling pathway|peptide hormone processing|regulation of hormone secretion	extracellular region|stored secretory granule	enzyme inhibitor activity|GTP binding|unfolded protein binding				0		all_lung(180;7.32e-08)		all cancers(64;6.48e-17)|Epithelial(43;1.23e-11)|GBM - Glioblastoma multiforme(186;1.39e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0212)		GAGGCTGCTTCATGGTGTTAT	0.547													12	78					0	0	0.000978	0	0
MEIS2	4212	broad.mit.edu	37	15	37390313	37390313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:37390313G>A	uc001zjr.2	-	2	1137	c.100C>T	c.(100-102)CCC>TCC	p.P34S	MEIS2_uc001zjl.2_Missense_Mutation_p.P21S|MEIS2_uc010ucj.1_Missense_Mutation_p.P21S|MEIS2_uc001zjm.2_5'UTR|MEIS2_uc001zjn.2_5'UTR|MEIS2_uc001zjo.2_Missense_Mutation_p.P34S|MEIS2_uc001zjp.2_Missense_Mutation_p.P34S|MEIS2_uc001zjs.2_Missense_Mutation_p.P34S|MEIS2_uc001zju.2_Missense_Mutation_p.P21S|MEIS2_uc001zjt.2_Missense_Mutation_p.P34S	NM_170675	NP_733775	O14770	MEIS2_HUMAN	Meis homeobox 2 isoform c	34					negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)	2		all_epithelial(112;9.77e-14)|Lung NSC(122;1.42e-09)|all_lung(180;2.2e-08)|Ovarian(310;0.134)|Melanoma(134;0.155)		all cancers(64;9.33e-21)|GBM - Glioblastoma multiforme(113;1.71e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0288)		TGAACCGGGGGGATCGGCCGC	0.672													9	51					0	0	0.008291	0	0
SPTBN5	51332	broad.mit.edu	37	15	42147567	42147567	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:42147567C>T	uc001zos.2	-	55	9506	c.9173G>A	c.(9172-9174)AGG>AAG	p.R3058K		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	3093	Spectrin 27.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		GGCCTCCGCCCTCCGCAGCAG	0.692													7	41					0	0	0.003080	0	0
MAP1A	4130	broad.mit.edu	37	15	43817097	43817097	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:43817097C>T	uc001zrt.2	+	4	3893	c.3426C>T	c.(3424-3426)GAC>GAT	p.D1142D		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1142						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	GATATCCTGACCGAAGCCTCT	0.572													7	57					0	0	0.001984	0	0
DUOX2	50506	broad.mit.edu	37	15	45398382	45398382	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:45398382G>A	uc010bea.2	-	17	2292	c.2089C>T	c.(2089-2091)CTG>TTG	p.L697L	DUOX2_uc001zun.2_Silent_p.L697L	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	697	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		TTGTTGGACAGGATGAGGTTG	0.602													4	13					0	0	0.000602	0	0
ATP8B4	79895	broad.mit.edu	37	15	50288950	50288950	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:50288950C>T	uc001zxu.2	-	9	655	c.513G>A	c.(511-513)ACG>ACA	p.T171T	ATP8B4_uc010ber.2_Silent_p.T44T|ATP8B4_uc010ufd.1_Silent_p.T44T|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	171	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		CTTTTAGGTTCGTTTCCCTGT	0.408													4	18					0	0	0.000248	0	0
GLDN	342035	broad.mit.edu	37	15	51696536	51696536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:51696536G>A	uc002aba.2	+	10	1410	c.1241G>A	c.(1240-1242)CGA>CAA	p.R414Q	GLDN_uc002abb.2_Missense_Mutation_p.R290Q	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	414	Extracellular (Potential).|Olfactomedin-like.				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		TATTTTGATCGAAAATACCTT	0.373													17	100					0	0	0.006122	0	0
UNC13C	440279	broad.mit.edu	37	15	54307828	54307828	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:54307828T>A	uc002ack.2	+	1	2728	c.2728T>A	c.(2728-2730)TAT>AAT	p.Y910N		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	910					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TCACCTTTCATATGAAACACC	0.383													18	83					0	0	0.008871	0	0
ALDH1A2	8854	broad.mit.edu	37	15	58256196	58256196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:58256196G>A	uc002aex.2	-	9	1031	c.973C>T	c.(973-975)CGC>TGC	p.R325C	ALDH1A2_uc002aey.2_Missense_Mutation_p.R287C|ALDH1A2_uc010ugv.1_Missense_Mutation_p.R304C|ALDH1A2_uc010ugw.1_Missense_Mutation_p.R296C|ALDH1A2_uc002aew.2_Missense_Mutation_p.R229C	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	325					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	ACGAAGATGCGAGAGCCTGCA	0.562													15	46					0	0	0.003163	0	0
LIPC	3990	broad.mit.edu	37	15	58855829	58855829	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:58855829C>G	uc010bga.1	+	10	1903	c.1295C>G	c.(1294-1296)ACG>AGG	p.T432R	LIPC_uc010bfz.1_Missense_Mutation_p.T432R|LIPC_uc002afa.1_Missense_Mutation_p.T432R|LIPC_uc010bgb.1_Missense_Mutation_p.T330R|LIPC_uc010ugy.1_Missense_Mutation_p.T371R	NM_000236	NP_000227	P11150	LIPC_HUMAN	lipase C precursor	432	PLAT.				cholesterol homeostasis|chylomicron remnant clearance|fatty acid biosynthetic process|high-density lipoprotein particle remodeling|intermediate-density lipoprotein particle remodeling|low-density lipoprotein particle remodeling|phosphatidylcholine catabolic process|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein binding|heparin binding|low-density lipoprotein particle binding|phospholipase activity|triglyceride lipase activity			ovary(1)	1		Colorectal(260;0.215)		GBM - Glioblastoma multiforme(80;0.00213)|all cancers(107;0.00548)		GTCTGGGACACGGTCCAGACC	0.532													5	27					0	0	0.000602	0	0
VPS13C	54832	broad.mit.edu	37	15	62209763	62209763	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:62209763C>T	uc002agz.2	-	60	7906	c.7832G>A	c.(7831-7833)TGG>TAG	p.W2611*	VPS13C_uc002aha.2_Nonsense_Mutation_p.W2568*|VPS13C_uc002ahb.1_Nonsense_Mutation_p.W2611*|VPS13C_uc002ahc.1_Nonsense_Mutation_p.W2568*|VPS13C_uc002ahd.1_5'UTR	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	2611					protein localization					ovary(2)	2						TTCTTCCTTCCAGGAAATATA	0.413													10	55					0	0	0.008291	0	0
TIPIN	54962	broad.mit.edu	37	15	66633495	66633495	+	Silent	SNP	T	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:66633495T>A	uc002apr.2	-	7	761	c.675A>T	c.(673-675)CTA>CTT	p.L225L	TIPIN_uc010ujn.1_Silent_p.L124L|TIPIN_uc010ujo.1_Silent_p.L124L	NM_017858	NP_060328	Q9BVW5	TIPIN_HUMAN	TIMELESS interacting protein	225					cell division|DNA replication checkpoint|intra-S DNA damage checkpoint|mitosis|positive regulation of cell proliferation|regulation of DNA replication involved in S phase|replication fork protection	cytoplasm|nuclear chromatin	protein binding			ovary(1)	1						TACCATTTCCTAGGGTCTGAC	0.358													21	97					0	0	0.002780	0	0
SNAPC5	10302	broad.mit.edu	37	15	66790148	66790148	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:66790148G>A	uc002apu.1	-	1	1	c.-76_splice	c.e1-1			NM_006049	NP_006040	O75971	SNPC5_HUMAN	small nuclear RNA activating complex,						transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase III promoter	nucleoplasm	sequence-specific DNA binding transcription factor activity				0						CCGACTCCCGGAAACCGAGCG	0.706											OREG0023204	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	9					0	0	0.001168	0	0
LCTL	197021	broad.mit.edu	37	15	66855937	66855937	+	Missense_Mutation	SNP	C	T	T	rs113055189		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:66855937C>T	uc002aqc.2	-	4	529	c.397G>A	c.(397-399)GAA>AAA	p.E133K	LCTL_uc002aqd.3_5'UTR|LCTL_uc010bhw.2_5'UTR	NM_207338	NP_997221	Q6UWM7	LCTL_HUMAN	lactase-like precursor	133	Extracellular (Potential).				carbohydrate metabolic process	endoplasmic reticulum membrane|integral to membrane	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(2)	2						CTGTAGAATTCGATTCCCTTC	0.527													8	38					0	0	0.003080	0	0
SEMA7A	8482	broad.mit.edu	37	15	74708937	74708937	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:74708937G>A	uc002axv.2	-	7	820	c.780C>T	c.(778-780)TCC>TCT	p.S260S	SEMA7A_uc010ulk.1_Silent_p.S95S|SEMA7A_uc010ull.1_Silent_p.S246S	NM_003612	NP_003603	O75326	SEM7A_HUMAN	semaphorin 7A isoform 1 preproprotein	260	Sema.				axon guidance|immune response|inflammatory response|integrin-mediated signaling pathway|positive regulation of axon extension|positive regulation of ERK1 and ERK2 cascade|positive regulation of macrophage cytokine production|regulation of inflammatory response	anchored to membrane|external side of plasma membrane	receptor activity			breast(1)|central_nervous_system(1)	2						GGGCCACACGGGACACATTGA	0.557													9	46					0	0	0.004482	0	0
TSPAN3	10099	broad.mit.edu	37	15	77348180	77348180	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:77348180A>T	uc002bcj.2	-	3	498	c.281T>A	c.(280-282)TTT>TAT	p.F94Y	TSPAN3_uc002bck.2_Intron|TSPAN3_uc010ump.1_Missense_Mutation_p.F30Y|TSPAN3_uc010bkx.2_Intron	NM_005724	NP_005715	O60637	TSN3_HUMAN	transmembrane 4 superfamily member 8 isoform 1	94	Helical; (Potential).					integral to membrane					0				all cancers(203;1.14e-19)		TTCTGTGACAAAAACCAAGAG	0.299													15	66					0	0	0.001523	0	0
HOMER2	9455	broad.mit.edu	37	15	83561540	83561540	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:83561540G>A	uc002bjg.2	-	2	245	c.59C>T	c.(58-60)ACC>ATC	p.T20I	HOMER2_uc002bjh.2_Missense_Mutation_p.T20I|HOMER2_uc002bjj.2_Missense_Mutation_p.T20I|HOMER2_uc002bji.2_Missense_Mutation_p.T20I	NM_199330	NP_955362	Q9NSB8	HOME2_HUMAN	homer 2 isoform 2	20	WH1.				metabotropic glutamate receptor signaling pathway	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane					0						GTTCTTCTTGGTGTTGGGGTC	0.517													13	91					0	0	0.001855	0	0
AKAP13	11214	broad.mit.edu	37	15	86284370	86284370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:86284370C>T	uc002blv.1	+	35	7872	c.7702C>T	c.(7702-7704)CTC>TTC	p.L2568F	AKAP13_uc002blu.1_Missense_Mutation_p.L2572F|AKAP13_uc002blw.1_Missense_Mutation_p.L1033F|AKAP13_uc002blx.1_Missense_Mutation_p.L813F	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	2568	Interaction with ESR1.|Potential.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						CCCGAGCTCCCTCATTGAGCA	0.642													4	21					0	0	0.000248	0	0
TTLL13	440307	broad.mit.edu	37	15	90800928	90800928	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:90800928C>T	uc002bpd.1	+	8	1197	c.909C>T	c.(907-909)GTC>GTT	p.V303V	TTLL13_uc002bpe.1_RNA	NM_001029964	NP_001025135	A6NNM8	TTL13_HUMAN	tubulin tyrosine ligase-like family, member 13	303	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity				0	Melanoma(11;0.00551)|Lung NSC(78;0.0178)|all_lung(78;0.0378)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|BRCA - Breast invasive adenocarcinoma(143;0.0323)|Kidney(142;0.0514)			AGAATTTTGTCCGGGATGGCG	0.522													19	70					0	0	0.003954	0	0
MCTP2	55784	broad.mit.edu	37	15	95020022	95020022	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr15:95020022G>A	uc002btj.2	+	21	2633	c.2568G>A	c.(2566-2568)AAG>AAA	p.K856K	MCTP2_uc010boj.2_Silent_p.K585K|MCTP2_uc010bok.2_Silent_p.K801K|MCTP2_uc002btl.2_Silent_p.K444K	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	856					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			ATGTTCAAAAGGTATGTAATG	0.448													9	55					0	0	0.006214	0	0
TRAF7	84231	broad.mit.edu	37	16	2223538	2223538	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:2223538G>T	uc002cow.2	+	11	1168	c.1069G>T	c.(1069-1071)GAC>TAC	p.D357Y		NM_032271	NP_115647	Q6Q0C0	TRAF7_HUMAN	TNF receptor-associated factor 7	357					activation of MAPKKK activity|apoptosis|regulation of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic membrane-bounded vesicle|ubiquitin ligase complex	identical protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						GTTCCGGCGGGACGCATCCAT	0.677													10	37					6.40141e-05	7.19253e-05	0.000978	1	0
SRRM2	23524	broad.mit.edu	37	16	2814690	2814690	+	Silent	SNP	C	T	T	rs78949014	byFrequency	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:2814690C>T	uc002crk.2	+	11	4710	c.4161C>T	c.(4159-4161)TCC>TCT	p.S1387S	SRRM2_uc002crj.1_Silent_p.S1291S|SRRM2_uc002crl.1_Silent_p.S1387S|SRRM2_uc010bsu.1_Silent_p.S1291S	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1387	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CTGAGTTATCCCCAGATGCAG	0.448													50	228					0	0	0.003610	0	0
ZG16B	124220	broad.mit.edu	37	16	2881912	2881912	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:2881912C>T	uc002cru.2	+	4	455	c.379C>T	c.(379-381)CAA>TAA	p.Q127*		NM_145252	NP_660295	Q96DA0	ZG16B_HUMAN	zymogen granule protein 16 homolog B precursor	127						extracellular region	sugar binding			ovary(1)	1						TGTCGCCTTCCAAGCTTTCCT	0.532													12	50					0	0	0.001855	0	0
A2BP1	54715	broad.mit.edu	37	16	7703888	7703888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:7703888C>T	uc002cys.2	+	12	1817	c.829C>T	c.(829-831)CGC>TGC	p.R277C	A2BP1_uc010buf.1_Missense_Mutation_p.R277C|A2BP1_uc002cyr.1_Missense_Mutation_p.R276C|A2BP1_uc002cyt.2_Missense_Mutation_p.R250C|A2BP1_uc010uxz.1_Missense_Mutation_p.R320C|A2BP1_uc010uya.1_Missense_Mutation_p.R234C|A2BP1_uc002cyv.1_Missense_Mutation_p.R277C|A2BP1_uc010uyb.1_Missense_Mutation_p.R277C|A2BP1_uc002cyw.2_Missense_Mutation_p.R297C|A2BP1_uc002cyy.2_Missense_Mutation_p.R297C|A2BP1_uc002cyx.2_Missense_Mutation_p.R297C|A2BP1_uc010uyc.1_Missense_Mutation_p.R270C	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	277					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		AGGCCGCGGTCGCACCGTGTA	0.617													9	40					0	0	0.004482	0	0
TXNDC11	51061	broad.mit.edu	37	16	11792183	11792183	+	Splice_Site	SNP	T	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:11792183T>A	uc010buu.1	-	8	1050	c.988_splice	c.e8-1	p.V330_splice	TXNDC11_uc002dbg.1_Splice_Site_p.V303_splice	NM_015914	NP_056998	Q6PKC3	TXD11_HUMAN	thioredoxin domain containing 11						cell redox homeostasis	endoplasmic reticulum membrane|integral to membrane					0						GGGGAAGACCTGTGAAGGACA	0.547													11	32					0	0	0.008291	0	0
PDXDC1	23042	broad.mit.edu	37	16	15110009	15110009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:15110009G>A	uc002dda.3	+	9	975	c.751G>A	c.(751-753)GAC>AAC	p.D251N	PDXDC1_uc010uzl.1_Missense_Mutation_p.D236N|PDXDC1_uc010uzm.1_Missense_Mutation_p.D160N|PDXDC1_uc002dcz.2_Missense_Mutation_p.D228N|PDXDC1_uc002ddb.3_Missense_Mutation_p.D224N|PDXDC1_uc010uzn.1_Missense_Mutation_p.D223N|PDXDC1_uc002ddc.2_Missense_Mutation_p.D251N	NM_015027	NP_055842	Q6P996	PDXD1_HUMAN	pyridoxal-dependent decarboxylase domain	251					carboxylic acid metabolic process		carboxy-lyase activity|protein binding|pyridoxal phosphate binding			skin(1)	1					Pyridoxal Phosphate(DB00114)	AGGACACACAGACAAGATTGG	0.463													5	83					0	0	0.006214	0	0
RRN3	54700	broad.mit.edu	37	16	15166834	15166834	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:15166834G>A	uc002dde.2	-	12	1169	c.1101C>T	c.(1099-1101)TTC>TTT	p.F367F	PDXDC1_uc002ddc.2_Intron|RRN3_uc010uzp.1_Silent_p.F235F|RRN3_uc010uzq.1_Silent_p.F337F	NM_018427	NP_060897	Q9NYV6	RRN3_HUMAN	RRN3 RNA polymerase I transcription factor	367					regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm				ovary(1)	1						GGTAAAACATGAAAAACTGTA	0.383													8	39					0	0	0.003080	0	0
XYLT1	64131	broad.mit.edu	37	16	17235063	17235063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:17235063C>T	uc002dfa.2	-	7	1619	c.1534G>A	c.(1534-1536)GAT>AAT	p.D512N		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	512	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						GTCACCAGATCGTCTGTGGAG	0.517													34	217					0	0	0.005524	0	0
LOC81691	81691	broad.mit.edu	37	16	20856542	20856542	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:20856542C>T	uc002dhv.2	+	18	2366	c.2103C>T	c.(2101-2103)CCC>CCT	p.P701P	ERI2_uc002dht.3_Intron|LOC81691_uc002dhx.2_Silent_p.P670P|LOC81691_uc002dhw.2_Silent_p.P444P|LOC81691_uc002dhy.3_Silent_p.P701P	NM_030941	NP_112203	Q96IC2	REXON_HUMAN	exonuclease NEF-sp isoform 1	701						nucleolus	exonuclease activity|nucleotide binding|RNA binding			ovary(1)|kidney(1)	2						TACCTCCCCCCTTTGAACAGG	0.527													3	20					0	0	0.004672	0	0
OTOA	146183	broad.mit.edu	37	16	21709189	21709189	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:21709189C>T	uc002djh.2	+	9	834	c.833C>T	c.(832-834)CCT>CTT	p.P278L	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.P199L	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	278					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		AAAATTAGTCCTATAGAAGTA	0.383													12	55					0	0	0.001855	0	0
CACNG3	10368	broad.mit.edu	37	16	24373110	24373110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:24373110C>T	uc002dmf.2	+	4	2074	c.874C>T	c.(874-876)CAC>TAC	p.H292Y		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	292					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		TCTACAGTTCCACAATTCCAC	0.562													24	57					0	0	0.003330	0	0
APOB48R	55911	broad.mit.edu	37	16	28508738	28508738	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:28508738G>A	uc002dqb.1	+	3	2359	c.2349G>A	c.(2347-2349)TCG>TCA	p.S783S	uc010vct.1_Intron|APOB48R_uc010byg.1_Silent_p.S321S	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor	783	Glu-rich.				cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						GCTGGGACTCGAAAGAAAAGG	0.592													6	22					0	0	0.001984	0	0
ITGAD	3681	broad.mit.edu	37	16	31419746	31419746	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:31419746G>A	uc002ebv.1	+	10	1059	c.1010G>A	c.(1009-1011)GGA>GAA	p.G337E	ITGAD_uc010vfl.1_3'UTR|ITGAD_uc010cap.1_Missense_Mutation_p.G337E|ITGAD_uc002ebw.1_3'UTR	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	337	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						TTCCCCACAGGAACCCAGTCC	0.532													5	34					0	0	0.000602	0	0
NETO2	81831	broad.mit.edu	37	16	47117523	47117523	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:47117523G>A	uc002eer.1	-	9	1572	c.1187C>T	c.(1186-1188)CCT>CTT	p.P396L	NETO2_uc002eeq.1_Missense_Mutation_p.P131L|NETO2_uc010vgf.1_Missense_Mutation_p.P253L	NM_018092	NP_060562	Q8NC67	NETO2_HUMAN	neuropilin- and tolloid-like protein 2	396	Cytoplasmic (Potential).					integral to membrane	receptor activity				0		all_cancers(37;0.00114)|all_lung(18;0.00432)|Lung NSC(13;0.0384)|Breast(268;0.174)				TTCATAATGAGGAGGATCAAA	0.423										HNSCC(25;0.065)			16	62					0	0	0.004990	0	0
ADCY7	113	broad.mit.edu	37	16	50335009	50335009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:50335009G>A	uc002egd.1	+	9	1520	c.1252G>A	c.(1252-1254)GAG>AAG	p.E418K	ADCY7_uc002egb.1_Missense_Mutation_p.E418K|ADCY7_uc002egc.1_Missense_Mutation_p.E418K	NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	418	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	GCACATCACGGAGGCCACGCT	0.652													7	20					0	0	0.006214	0	0
SALL1	6299	broad.mit.edu	37	16	51171346	51171346	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:51171346G>A	uc010vgs.1	-	3	3683	c.3652C>T	c.(3652-3654)CAG>TAG	p.Q1218*	SALL1_uc010vgr.1_Nonsense_Mutation_p.Q1121*|SALL1_uc010cbv.2_Nonsense_Mutation_p.Q70*	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1218					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AAATCCTTCTGGAACATTTCT	0.567													11	25					0	0	0.008291	0	0
SALL1	6299	broad.mit.edu	37	16	51174572	51174572	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:51174572G>A	uc010vgs.1	-	2	1592	c.1561C>T	c.(1561-1563)CCC>TCC	p.P521S	SALL1_uc010vgr.1_Missense_Mutation_p.P424S|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	521					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GTACTCGTGGGGATATTGTCC	0.517													7	63					0	0	0.004482	0	0
CHD9	80205	broad.mit.edu	37	16	53283919	53283919	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:53283919A>T	uc002ehb.2	+	16	3966	c.3802A>T	c.(3802-3804)ACT>TCT	p.T1268S	CHD9_uc002egy.2_Missense_Mutation_p.T1268S|CHD9_uc002eha.1_Missense_Mutation_p.T1268S|CHD9_uc002ehc.2_Missense_Mutation_p.T1268S|CHD9_uc002ehf.2_Missense_Mutation_p.T382S|CHD9_uc002ehd.2_Missense_Mutation_p.T794S	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	1268	Helicase C-terminal.				cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				CATCAACTTAACTGCAGCTGA	0.353													18	83					0	0	0.001523	0	0
NLRC5	84166	broad.mit.edu	37	16	57056215	57056215	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:57056215C>T	uc002ekk.1	+	4	568	c.343C>T	c.(343-345)CAG>TAG	p.Q115*	NLRC5_uc010ccq.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	115					defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				ACCTGAATCTCAGCTCCACCA	0.602													4	19					0	0	0.000248	0	0
GPR97	222487	broad.mit.edu	37	16	57718373	57718373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:57718373G>A	uc002emh.2	+	10	1337	c.1234G>A	c.(1234-1236)GAG>AAG	p.E412K	GPR97_uc010vhv.1_Missense_Mutation_p.E292K|GPR97_uc010cdd.2_RNA|GPR97_uc010cde.2_Missense_Mutation_p.E20K	NM_170776	NP_740746	Q86Y34	GPR97_HUMAN	G protein-coupled receptor 97 precursor	412	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1						CCGTGATAGGGAGAACCGCAC	0.632													8	26					0	0	0.004482	0	0
KATNB1	10300	broad.mit.edu	37	16	57778395	57778395	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:57778395C>T	uc002eml.1	+	4	635	c.261C>T	c.(259-261)ATC>ATT	p.I87I		NM_005886	NP_005877	Q9BVA0	KTNB1_HUMAN	katanin p80 subunit B 1	87	WD 2.|Interaction with centrosomes.|Interaction with dynein (By similarity).				cell division|mitosis|negative regulation of microtubule depolymerization|positive regulation of microtubule depolymerization|protein targeting	katanin complex|microtubule|spindle pole	microtubule binding|protein heterodimerization activity				0		all_neural(199;0.223)				CGGGCTCCATCCGTGTCTGGG	0.622													10	84					0	0	0.008291	0	0
EDC4	23644	broad.mit.edu	37	16	67914531	67914531	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:67914531C>T	uc002eur.2	+	18	2335	c.2169C>T	c.(2167-2169)TCC>TCT	p.S723S	EDC4_uc010cer.2_Silent_p.S342S|EDC4_uc002eus.2_Silent_p.S453S|EDC4_uc002eut.1_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	723					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		CCCAAGCCTCCCCTAGCCGCA	0.617													37	161					0	0	0.006230	0	0
HYDIN	54768	broad.mit.edu	37	16	71212863	71212863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:71212863C>T	uc002ezr.2	-	4	477	c.349G>A	c.(349-351)GAA>AAA	p.E117K	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Missense_Mutation_p.E117K|HYDIN_uc010vmc.1_Missense_Mutation_p.E134K|HYDIN_uc010vmd.1_Missense_Mutation_p.E144K|HYDIN_uc002ezw.3_Missense_Mutation_p.E134K	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	117										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGTGGAACTTCATAGACTTCA	0.393													25	105					0	0	0.004656	0	0
MLKL	197259	broad.mit.edu	37	16	74729605	74729605	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:74729605C>T	uc002fdb.2	-	2	492	c.51G>A	c.(49-51)CGG>CGA	p.R17R	MLKL_uc002fdc.2_Silent_p.R17R	NM_152649	NP_689862	Q8NB16	MLKL_HUMAN	mixed lineage kinase domain-like isoform 1	17							ATP binding|protein binding|protein kinase activity			stomach(2)	2						TCTCTTCACACCGTTTGTGGA	0.498													8	64					0	0	0.006214	0	0
ATMIN	23300	broad.mit.edu	37	16	81077221	81077221	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:81077221A>G	uc002ffz.1	+	4	1136	c.1118A>G	c.(1117-1119)AAT>AGT	p.N373S	ATMIN_uc002fga.2_Missense_Mutation_p.N215S|ATMIN_uc010vnn.1_Missense_Mutation_p.N144S|ATMIN_uc002fgb.1_Missense_Mutation_p.N215S	NM_015251	NP_056066	O43313	ATMIN_HUMAN	ATM interactor	373	Required for formation of RAD51 foci.				response to DNA damage stimulus	nucleus	zinc ion binding				0						AAAATTGCTAATCCTATTGCT	0.433													8	61					0	0	0.003080	0	0
PKD1L2	114780	broad.mit.edu	37	16	81157334	81157334	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:81157334A>C	uc002fgh.1	-	39	6406	c.6406T>G	c.(6406-6408)TTT>GTT	p.F2136V	PKD1L2_uc002fgf.1_5'UTR|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2136	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GACTCCACAAACACAGCTCTG	0.567													13	86					0	0	0.001368	0	0
GPR172B	55065	broad.mit.edu	37	17	4936832	4936832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:4936832C>T	uc002gap.3	-	3	1665	c.952G>A	c.(952-954)GTG>ATG	p.V318M	GPR172B_uc002gao.3_Missense_Mutation_p.V318M|GPR172B_uc010ckw.2_Missense_Mutation_p.V196M|GPR172B_uc010ckx.2_Missense_Mutation_p.V318M	NM_001104577	NP_001098047	Q9NWF4	RFT_HUMAN	G protein-coupled receptor 172B precursor	318	Helical; (Potential).					integral to plasma membrane	receptor activity|riboflavin transporter activity				0						CTGCCCAGCACCACAGCCAGG	0.622													6	46					0	0	0.001984	0	0
NLGN2	57555	broad.mit.edu	37	17	7318850	7318850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:7318850C>T	uc002ggt.1	+	6	1131	c.1058C>T	c.(1057-1059)CCC>CTC	p.P353L		NM_020795	NP_065846	Q8NFZ4	NLGN2_HUMAN	neuroligin 2 precursor	353	Extracellular (Potential).				cell-cell junction maintenance|neuron cell-cell adhesion|positive regulation of synaptogenesis|regulation of inhibitory postsynaptic membrane potential|synapse assembly	cell surface|integral to plasma membrane|postsynaptic membrane	neurexin binding|receptor activity			central_nervous_system(1)	1		Prostate(122;0.157)				GCCTTTGGGCCCGTGGTGGAT	0.612													7	45					0	0	0.001984	0	0
POLR2A	5430	broad.mit.edu	37	17	7415630	7415630	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:7415630C>T	uc002ghf.3	+	26	4693	c.4459C>T	c.(4459-4461)CCC>TCC	p.P1487S		NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	1487					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				CATGGAGATCCCCACCAATAT	0.642													10	45					0	0	0.001368	0	0
ALOX15B	247	broad.mit.edu	37	17	7942489	7942489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:7942489G>A	uc002gju.2	+	1	132	c.16G>A	c.(16-18)GTC>ATC	p.V6I	ALOX15B_uc002gjv.2_Missense_Mutation_p.V6I|ALOX15B_uc002gjw.2_Missense_Mutation_p.V6I|ALOX15B_uc010vun.1_Missense_Mutation_p.V6I|ALOX15B_uc010cnp.2_5'UTR	NM_001141	NP_001132	O15296	LX15B_HUMAN	arachidonate 15-lipoxygenase, second type	6	PLAT.				induction of apoptosis|leukotriene biosynthetic process|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of growth|prostate gland development|regulation of epithelial cell differentiation	cytoplasm	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			ovary(1)	1						CGAGTTCAGGGTCAGGGTGTC	0.667													11	61					0	0	0.000978	0	0
NDEL1	81565	broad.mit.edu	37	17	8347657	8347657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:8347657C>T	uc002glj.2	+	2	265	c.68C>T	c.(67-69)TCC>TTC	p.S23F	NDEL1_uc002gli.2_Missense_Mutation_p.S23F	NM_030808	NP_110435	Q9GZM8	NDEL1_HUMAN	nudE nuclear distribution gene E homolog (A.	23					chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|microtubule|spindle					0						AAGGAACTTTCCTTGAAGTAT	0.353													10	32					0	0	0.006214	0	0
CCDC42	146849	broad.mit.edu	37	17	8647889	8647889	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:8647889C>T	uc002gln.2	-	1	266	c.39G>A	c.(37-39)GAG>GAA	p.E13E	CCDC42_uc002glo.2_Silent_p.E13E	NM_144681	NP_653282	Q96M95	CCD42_HUMAN	coiled-coil domain containing 42 isoform 1	13										ovary(1)	1						GCCGGAAGTACTCGGCCAGGT	0.607													8	50					0	0	0.004482	0	0
MYH13	8735	broad.mit.edu	37	17	10233820	10233820	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:10233820G>A	uc002gmk.1	-	21	2409	c.2319C>T	c.(2317-2319)CTC>CTT	p.L773L		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	773	Myosin head-like.|Actin-binding (By similarity).				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						AAAGTCCCAGGAGCCCAGCTT	0.557													3	5					0	0	0.000248	0	0
DNAH9	1770	broad.mit.edu	37	17	11642272	11642272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:11642272C>T	uc002gne.2	+	29	5958	c.5890C>T	c.(5890-5892)CCT>TCT	p.P1964S	DNAH9_uc010coo.2_Missense_Mutation_p.P1258S	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1964	AAA 1 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CAGCCTGAATCCTTCTGTCGG	0.493													10	45					0	0	0.006214	0	0
MAP2K4	6416	broad.mit.edu	37	17	11984723	11984723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:11984723C>T	uc002gnj.2	+	3	338	c.269C>T	c.(268-270)TCC>TTC	p.S90F	MAP2K4_uc002gnk.2_Missense_Mutation_p.S101F|MAP2K4_uc010vvi.1_5'UTR|MAP2K4_uc010vvj.1_Intron|MIR744_hsa-mir-744|MI0005559_5'Flank	NM_003010	NP_003001	P45985	MP2K4_HUMAN	mitogen-activated protein kinase kinase 4	90					cellular response to mechanical stimulus|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|JUN kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.?(1)		large_intestine(14)|breast(12)|lung(8)|ovary(8)|pancreas(8)|stomach(2)|central_nervous_system(1)|biliary_tract(1)|testis(1)|endometrium(1)|urinary_tract(1)|skin(1)	58		all_cancers(5;0.0413)|Breast(5;0.000625)|all_epithelial(5;0.00978)|all_lung(20;0.0449)|Lung NSC(33;0.163)		Epithelial(2;4.12e-09)|all cancers(2;6.86e-07)|BRCA - Breast invasive adenocarcinoma(2;8.74e-07)|Colorectal(4;5.32e-05)|COAD - Colon adenocarcinoma(4;0.0039)|READ - Rectum adenocarcinoma(10;0.0681)		CTGAAGATCTCCCCTGAACAA	0.403			D|Mis|N		pancreatic|breast|colorectal								7	26					0	0	0.003080	0	0
MYOCD	93649	broad.mit.edu	37	17	12626207	12626207	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:12626207G>A	uc002gnn.2	+	5	596	c.297G>A	c.(295-297)CTG>CTA	p.L99L	MYOCD_uc002gno.2_Silent_p.L99L|MYOCD_uc002gnp.1_Silent_p.L3L	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	99					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		AGATGAAGCTGAAAAGAGCCC	0.458													31	119					0	0	0.008361	0	0
MYOCD	93649	broad.mit.edu	37	17	12626240	12626240	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:12626240A>C	uc002gnn.2	+	5	629	c.330A>C	c.(328-330)GAA>GAC	p.E110D	MYOCD_uc002gno.2_Missense_Mutation_p.E110D|MYOCD_uc002gnp.1_Missense_Mutation_p.E14D	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	110	RPEL 3.				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		ATCTCAATGAAAAAATTGCTC	0.448													3	125					0	0	0.004672	0	0
MYOCD	93649	broad.mit.edu	37	17	12655755	12655755	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:12655755C>T	uc002gnn.2	+	10	1449	c.1150C>T	c.(1150-1152)CGA>TGA	p.R384*	MYOCD_uc002gno.2_Nonsense_Mutation_p.R384*|MYOCD_uc002gnp.1_Nonsense_Mutation_p.R288*|MYOCD_uc002gnq.2_Nonsense_Mutation_p.R103*	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	384	SAP.				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		ACAACAGCTTCGAATTCGGGG	0.453													6	48					0	0	0.001984	0	0
RAI1	10743	broad.mit.edu	37	17	17698654	17698654	+	Missense_Mutation	SNP	C	T	T	rs148947371		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:17698654C>T	uc002grm.2	+	3	2861	c.2392C>T	c.(2392-2394)CCC>TCC	p.P798S	RAI1_uc002grn.1_Missense_Mutation_p.P798S	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	798						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		GGAGGAGGACCCCCCTGGGGA	0.667													8	23					0	0	0.003080	0	0
SEZ6	124925	broad.mit.edu	37	17	27308743	27308743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:27308743G>A	uc002hdp.2	-	2	564	c.370C>T	c.(370-372)CCA>TCA	p.P124S	SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Missense_Mutation_p.P124S|SEZ6_uc002hdq.1_5'UTR|SEZ6_uc010crz.1_Missense_Mutation_p.P124S	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	124	Pro-rich.|Extracellular (Potential).					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			GCCATGGCTGGAGTGGGGCTG	0.647													6	37					0	0	0.001984	0	0
ATAD5	79915	broad.mit.edu	37	17	29171041	29171041	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:29171041C>T	uc002hfs.1	+	5	2698	c.2352C>T	c.(2350-2352)TCC>TCT	p.S784S	ATAD5_uc002hft.1_Silent_p.S681S	NM_024857	NP_079133	Q96QE3	ATAD5_HUMAN	ATPase family, AAA domain containing 5	784					response to DNA damage stimulus	nucleus	ATP binding|nucleoside-triphosphatase activity			ovary(3)	3		all_hematologic(16;0.0202)|Acute lymphoblastic leukemia(14;0.0238)|Myeloproliferative disorder(56;0.0393)				TTAACACATCCACTAAAAATG	0.249													12	67					0	0	0.001368	0	0
ADAP2	55803	broad.mit.edu	37	17	29283298	29283298	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:29283298G>T	uc002hfx.2	+	10	1201	c.922G>T	c.(922-924)GAG>TAG	p.E308*	ADAP2_uc010csk.2_Nonsense_Mutation_p.E314*|ADAP2_uc002hfy.2_Nonsense_Mutation_p.E307*|ADAP2_uc010csl.2_RNA	NM_018404	NP_060874	Q9NPF8	ADAP2_HUMAN	centaurin-alpha 2 protein	308	PH 2.				heart development|regulation of ARF GTPase activity	mitochondrial envelope|plasma membrane	ARF GTPase activator activity|inositol 1,3,4,5 tetrakisphosphate binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding, bridging|zinc ion binding	p.?(1)		ovary(1)	1						TGGGAACAAGGAGCAGGGATA	0.582													10	36					1.08611e-07	1.22845e-07	0.000978	1	0
TBC1D3	729873	broad.mit.edu	37	17	36288254	36288254	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:36288254C>T	uc002hoo.2	+	6	497	c.340C>T	c.(340-342)CTC>TTC	p.L114F	TBC1D3_uc002hop.2_RNA|TBC1D3_uc010wdj.1_Missense_Mutation_p.L34F|TBC1D3_uc010cvf.1_Missense_Mutation_p.L114F|TBC1D3_uc002hoq.2_Missense_Mutation_p.L114F|TBC1D3_uc010wdk.1_Missense_Mutation_p.L175F|uc002hpl.2_5'Flank|uc002hor.2_5'Flank	NM_032258	NP_115634	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3F	114	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0	Breast(7;2.97e-12)	Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GTGGTCAGTCCTCCTGAACAC	0.567													25	641					0	0	0.002096	0	0
GPR179	440435	broad.mit.edu	37	17	36483959	36483959	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:36483959C>T	uc002hpz.2	-	11	5514	c.5493G>A	c.(5491-5493)TTG>TTA	p.L1831L		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1831	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				CCTTTTGGTCCAATCCCTTCC	0.517													19	107					0	0	0.001882	0	0
Unknown	0	broad.mit.edu	37	17	37187597	37187597	+	RNA	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:37187597C>T	uc002hrd.1	+	1		c.1439C>T								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		TCAGGAGACCCCAACTTAGCC	0.507													13	55					0	0	0.001368	0	0
KRT10	3858	broad.mit.edu	37	17	38975971	38975971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:38975971C>T	uc002hvi.2	-	6	1197	c.1171G>A	c.(1171-1173)GCC>ACC	p.A391T	KRT10_uc010cxd.2_RNA|TMEM99_uc002hvj.1_Intron	NM_000421	NP_000412	P13645	K1C10_HUMAN	keratin 10	391	Rod.|Gly-rich.|Coil 2.				epidermis development		protein binding|structural constituent of epidermis				0		Breast(137;0.000301)				GCCAAGGAGGCTTCCAGGGAT	0.443													6	48					0	0	0.003080	0	0
KRT39	390792	broad.mit.edu	37	17	39118439	39118439	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:39118439A>G	uc002hvo.1	-	5	1007	c.971T>C	c.(970-972)GTT>GCT	p.V324A	KRT39_uc010wfm.1_Missense_Mutation_p.V57A	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	324	Coil 2.|Rod.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				CTGCAGTTCAACCTCCAGAGT	0.418													32	215					0	0	0.002836	0	0
KRT34	3885	broad.mit.edu	37	17	39535215	39535215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:39535215C>T	uc002hwm.2	-	6	1228	c.1216G>A	c.(1216-1218)GAC>AAC	p.D406N		NM_021013	NP_066293	O76011	KRT34_HUMAN	keratin 34	406	Tail.				epidermis development	intermediate filament	protein binding|structural molecule activity			central_nervous_system(1)	1		Breast(137;0.000496)				CACTTGCAGTCCTCACTCTCC	0.537													9	70					0	0	0.004482	0	0
KRT35	3886	broad.mit.edu	37	17	39635247	39635247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:39635247C>T	uc002hws.2	-	4	755	c.712G>A	c.(712-714)GAA>AAA	p.E238K		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	238	Rod.|Coil 1B.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				GAGTTCACTTCCTATAGCACA	0.557													7	38					0	0	0.001984	0	0
KRT9	3857	broad.mit.edu	37	17	39724523	39724523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:39724523C>T	uc002hxe.3	-	6	1351	c.1285G>A	c.(1285-1287)GAG>AAG	p.E429K	JUP_uc010wfs.1_Intron	NM_000226	NP_000217	P35527	K1C9_HUMAN	keratin 9	429	Rod.|Coil 2.				intermediate filament organization|skin development		protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Breast(137;0.000307)				CACTCGATCTCTTGCCGGACG	0.537													13	57					0	0	0.001368	0	0
KRT16	3868	broad.mit.edu	37	17	39767380	39767380	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:39767380G>A	uc002hxg.3	-	4	1013	c.874C>T	c.(874-876)CAG>TAG	p.Q292*	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	292	Rod.|Coil 2.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				TGCTCGTACTGGTCACGCATC	0.607													36	108					0	0	0.008740	0	0
HAP1	9001	broad.mit.edu	37	17	39883689	39883689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:39883689G>A	uc002hxm.1	-	9	1304	c.1292C>T	c.(1291-1293)TCC>TTC	p.S431F	JUP_uc010wfs.1_Intron|HAP1_uc002hxn.1_Intron|HAP1_uc002hxo.1_Intron|HAP1_uc002hxp.1_Intron	NM_177977	NP_817084	P54257	HAP1_HUMAN	huntingtin-associated protein 1 isoform 2	431	Glu-rich.|HAP1 N-terminal.				brain development|protein localization|synaptic transmission	actin cytoskeleton	protein binding			ovary(2)	2		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.0677)			CTGCAGCTGGGAACCCACCCA	0.627													8	48					0	0	0.004482	0	0
ARL4D	379	broad.mit.edu	37	17	41477377	41477377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:41477377C>T	uc002idt.2	+	2	458	c.277C>T	c.(277-279)CGG>TGG	p.R93W		NM_001661	NP_001652	P49703	ARL4D_HUMAN	ADP-ribosylation factor-like 4D	93					protein secretion|small GTPase mediated signal transduction	cytoplasm|nucleolus|plasma membrane	GTP binding|GTPase activity|protein binding			ovary(1)	1		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.155)		TTATACCCGCCGGACAGACGG	0.652													13	76					0	0	0.004007	0	0
KIF18B	146909	broad.mit.edu	37	17	43009545	43009545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:43009545C>T	uc010wji.1	-	10	1405	c.1304G>A	c.(1303-1305)GGG>GAG	p.G435E	KIF18B_uc002iht.2_Missense_Mutation_p.G435E|KIF18B_uc010wjh.1_Missense_Mutation_p.G423E	NM_001080443	NP_001073912			kinesin family member 18B											ovary(2)	2		Prostate(33;0.155)				GGCTCTAGGCCCTGCAGGGAG	0.637													11	41					0	0	0.000978	0	0
MRPL10	124995	broad.mit.edu	37	17	45901815	45901815	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:45901815A>G	uc002ilz.2	-	5	568	c.542T>C	c.(541-543)ATT>ACT	p.I181T	OSBPL7_uc002ilx.1_5'Flank|MRPL10_uc010wky.1_Missense_Mutation_p.I142T|MRPL10_uc002ily.2_Missense_Mutation_p.I191T	NM_145255	NP_660298	Q7Z7H8	RM10_HUMAN	mitochondrial ribosomal protein L10 precursor	181					ribosome biogenesis|translation	mitochondrial large ribosomal subunit	structural constituent of ribosome			ovary(1)	1						GGTGTCATCAATGCAGCCACC	0.537													7	56					0	0	0.006214	0	0
ITGA3	3675	broad.mit.edu	37	17	48141897	48141897	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:48141897C>A	uc010dbl.2	+	3	804	c.340C>A	c.(340-342)CCT>ACT	p.P114T	ITGA3_uc010dbm.2_Missense_Mutation_p.P114T	NM_002204	NP_002195	P26006	ITA3_HUMAN	integrin alpha 3 isoform a precursor	114	FG-GAP 2.|Extracellular (Potential).				blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			ovary(2)|pancreas(1)	3						CACAGATGACCCTGGCCATCA	0.587													7	30					5.4927e-09	6.21845e-09	0.004482	1	0
DGKE	8526	broad.mit.edu	37	17	54939586	54939586	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:54939586C>T	uc002iur.2	+	11	1678	c.1498C>T	c.(1498-1500)CGA>TGA	p.R500*	DGKE_uc002ius.1_Nonsense_Mutation_p.R500*	NM_003647	NP_003638	P52429	DGKE_HUMAN	diacylglycerol kinase epsilon	500					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|phospholipid biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding|protein binding			breast(2)	2	Breast(9;3.59e-07)					TAATCCTTTTCGAATAGGACA	0.393													9	18					0	0	0.000978	0	0
OR4D1	26689	broad.mit.edu	37	17	56232981	56232981	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:56232981C>T	uc010wno.1	+	1	467	c.467C>T	c.(466-468)TCC>TTC	p.S156F	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TTTGTCCACTCCATTGTCCAA	0.532													15	48					0	0	0.003163	0	0
EPX	8288	broad.mit.edu	37	17	56272400	56272400	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:56272400T>C	uc002ivq.2	+	6	756	c.670T>C	c.(670-672)TTC>CTC	p.F224L		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	224					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						AGCCCTCATGTTCATGCAGTG	0.602													5	34					0	0	0.000602	0	0
BZRAP1	9256	broad.mit.edu	37	17	56386569	56386569	+	Missense_Mutation	SNP	C	T	T	rs139202824	byFrequency	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:56386569C>T	uc002ivx.3	-	22	4935	c.4064G>A	c.(4063-4065)CGA>CAA	p.R1355Q	BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Missense_Mutation_p.R1295Q|BZRAP1_uc010wnt.1_Missense_Mutation_p.R1355Q	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1355						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GCCAGGGTCTCGGGAAGAACA	0.483													7	42					0	0	0.001984	0	0
USP32	84669	broad.mit.edu	37	17	58284461	58284461	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:58284461G>A	uc002iyo.1	-	25	3244	c.2958C>T	c.(2956-2958)CTC>CTT	p.L986L	USP32_uc002iyn.1_Silent_p.L656L	NM_032582	NP_115971	Q8NFA0	UBP32_HUMAN	ubiquitin specific protease 32	986					protein deubiquitination|ubiquitin-dependent protein catabolic process	Golgi apparatus|membrane	calcium ion binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|breast(2)|large_intestine(1)	5	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;2.02e-11)|all cancers(12;5.23e-10)|Colorectal(3;0.198)			CACTCACTGAGAGTCGTACTT	0.408													6	17					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	17	58511487	58511487	+	RNA	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:58511487G>A	uc002iyr.1	-	1		c.1871C>T								Homo sapiens cDNA FLJ33664 fis, clone BRAMY2027451, moderately similar to 60S RIBOSOMAL PROTEIN L12.																		CCAGGGGGCCGATCTTGGGGG	0.567													8	13					0	0	0.003080	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60345071	60345071	+	RNA	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:60345071C>T	uc010woz.1	-	11		c.872G>A			uc010wpb.1_5'Flank	NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						CAATCAATATCCGGATGAGGC	0.582													22	95					0	0	0.005443	0	0
CACNG4	27092	broad.mit.edu	37	17	65027082	65027082	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:65027082C>T	uc002jft.1	+	4	961	c.946C>T	c.(946-948)CAC>TAC	p.H316Y		NM_014405	NP_055220	Q9UBN1	CCG4_HUMAN	voltage-dependent calcium channel gamma-4	316	Cytoplasmic (Potential).				membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane	voltage-gated calcium channel activity			central_nervous_system(1)	1	all_cancers(12;9.86e-11)		BRCA - Breast invasive adenocarcinoma(6;1.35e-07)			GGAAGGTTTCCACGTCAGCAT	0.612													16	46					0	0	0.004990	0	0
ITGB4	3691	broad.mit.edu	37	17	73732427	73732427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:73732427C>T	uc002jpg.2	+	15	2007	c.1820C>T	c.(1819-1821)TCG>TTG	p.S607L	ITGB4_uc002jph.2_Missense_Mutation_p.S607L|ITGB4_uc010dgo.2_Missense_Mutation_p.S607L|ITGB4_uc002jpi.3_Missense_Mutation_p.S607L|ITGB4_uc010dgp.1_Missense_Mutation_p.S607L|ITGB4_uc002jpj.2_Missense_Mutation_p.S607L|ITGB4_uc010wsh.1_Missense_Mutation_p.S162L	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	607	Cysteine-rich tandem repeats.|Extracellular (Potential).|IV.				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			CACCAGCAGTCGCTCTACACG	0.637													13	65					0	0	0.004007	0	0
QRICH2	84074	broad.mit.edu	37	17	74288612	74288612	+	Silent	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:74288612T>C	uc002jrd.1	-	4	1878	c.1698A>G	c.(1696-1698)CAA>CAG	p.Q566Q	QRICH2_uc010wsz.1_Silent_p.Q492Q|QRICH2_uc010dgw.1_Intron	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	566	Gln-rich.						protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						CTACTCCAGGTTGGACCAAAC	0.532													11	51					0	0	0.000978	0	0
CARD14	79092	broad.mit.edu	37	17	78165120	78165120	+	Splice_Site	SNP	A	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:78165120A>C	uc002jxw.1	+	8	1285	c.1090_splice	c.e8-2	p.A364_splice	CARD14_uc002jxt.1_Splice_Site|CARD14_uc002jxv.2_Splice_Site_p.A364_splice|CARD14_uc010wud.1_Splice_Site|CARD14_uc002jxx.2_Splice_Site_p.A127_splice|CARD14_uc010dhu.1_Splice_Site_p.A162_splice	NM_024110	NP_077015	Q9BXL6	CAR14_HUMAN	caspase recruitment domain protein 14 isoform 1						activation of NF-kappaB-inducing kinase activity|positive regulation of protein phosphorylation|regulation of apoptosis	aggresome|cytoplasm|plasma membrane	CARD domain binding			ovary(4)|skin(1)	5	all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.017)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			CGTGGCCCACAGGCGTACTCC	0.632													5	47					0	0	0.001984	0	0
ARHGAP28	79822	broad.mit.edu	37	18	6882258	6882258	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:6882258C>T	uc010wzi.1	+	10	1120	c.882C>T	c.(880-882)TTC>TTT	p.F294F	ARHGAP28_uc002knc.2_Silent_p.F419F|ARHGAP28_uc002knd.2_Silent_p.F312F|ARHGAP28_uc002kne.2_Silent_p.F312F|ARHGAP28_uc002knf.2_Silent_p.F303F			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	294					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				CCTCTCTCTTCCCTGTGGAAT	0.388													10	40					0	0	0.000978	0	0
RAB31	11031	broad.mit.edu	37	18	9859235	9859235	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:9859235C>T	uc002kog.2	+	7	676	c.501C>T	c.(499-501)ATC>ATT	p.I167I		NM_006868	NP_006859	Q13636	RAB31_HUMAN	RAB31, member RAS oncogene family	166					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			skin(1)	1						GCCGCCAGATCCCACCCTTGG	0.537													4	24					0	0	0.000248	0	0
DSC3	1825	broad.mit.edu	37	18	28602306	28602306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:28602306C>T	uc002kwj.3	-	7	1093	c.938G>A	c.(937-939)AGA>AAA	p.R313K	DSC3_uc002kwi.3_Missense_Mutation_p.R313K	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	313	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			AGCTACCTCTCTGTCCAAATA	0.433													11	91					0	0	0.001368	0	0
DSC3	1825	broad.mit.edu	37	18	28611119	28611119	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:28611119G>A	uc002kwj.3	-	3	329	c.174C>T	c.(172-174)TTC>TTT	p.F58F	DSC3_uc002kwi.3_Silent_p.F58F	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	58					homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			CTGCAGACCTGAAGCACTCTT	0.353													10	24					0	0	0.008291	0	0
DSC2	1824	broad.mit.edu	37	18	28671044	28671044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:28671044G>A	uc002kwl.3	-	4	875	c.421C>T	c.(421-423)CCT>TCT	p.P141S	DSC2_uc002kwk.3_Missense_Mutation_p.P141S	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	141	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			ATCGAACAAGGAATTGGAGCC	0.398													4	19					0	0	0.000248	0	0
DSG3	1830	broad.mit.edu	37	18	29046576	29046577	+	Missense_Mutation	DNP	AA	GC	GC			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:29046576_29046577AA>GC	uc002kws.2	+	11	1604_1605	c.1495_1496AA>GC	c.(1495-1497)AAA>GCA	p.K499A		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	499	Cadherin 4.|Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TGTCCTCGAAAAAGATGCAGTT	0.421													24	98					0	0	0.004672	0	0
MEP1B	4225	broad.mit.edu	37	18	29793248	29793248	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:29793248G>A	uc002kxj.3	+	11	1352	c.1305G>A	c.(1303-1305)AGG>AGA	p.R435R		NM_005925	NP_005916	Q16820	MEP1B_HUMAN	meprin A beta precursor	435	Extracellular (Potential).|MATH.				digestion|proteolysis	extracellular space|integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)	2						GGCATATAAGGAATTTCACAC	0.433													7	30					0	0	0.003080	0	0
SETBP1	26040	broad.mit.edu	37	18	42530559	42530559	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:42530559G>A	uc010dni.2	+	4	1550	c.1254G>A	c.(1252-1254)AGG>AGA	p.R418R		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	418						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		ACCATAAGAGGAAAAAAAGAC	0.453									Schinzel-Giedion_syndrome				11	34					0	0	0.000978	0	0
KIAA0427	9811	broad.mit.edu	37	18	46190191	46190191	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:46190191C>T	uc002ldc.2	+	4	606	c.321C>T	c.(319-321)TCC>TCT	p.S107S	KIAA0427_uc002ldd.2_Silent_p.S107S	NM_014772	NP_055587	O43310	CTIF_HUMAN	hypothetical protein LOC9811 isoform 1	107	Interaction with NCBP1/CBP80.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational initiation	perinuclear region of cytoplasm	protein binding				0						CCTTCGATTCCTTCAGGTAAC	0.562											OREG0024970	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	72					0	0	0.002299	0	0
MYO5B	4645	broad.mit.edu	37	18	47527697	47527697	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:47527697G>A	uc002leb.2	-	5	828	c.540C>T	c.(538-540)TTC>TTT	p.F180F	MYO5B_uc002lec.1_Silent_p.F179F	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	180	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CAACGGTGGCGAAATAGCGCA	0.532													20	100					0	0	0.001523	0	0
MYO5B	4645	broad.mit.edu	37	18	47563340	47563340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:47563340G>A	uc002leb.2	-	4	623	c.335C>T	c.(334-336)CCT>CTT	p.P112L	MYO5B_uc002lec.1_Missense_Mutation_p.P111L	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	112	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CTGTTCATAAGGATTAATGGC	0.463													8	22					0	0	0.004482	0	0
MRO	83876	broad.mit.edu	37	18	48327733	48327733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:48327733G>A	uc002lew.3	-	6	865	c.571C>T	c.(571-573)CCC>TCC	p.P191S	MRO_uc010xdn.1_Intron|MRO_uc010dpa.2_Missense_Mutation_p.P205S|MRO_uc010dpb.2_Intron|MRO_uc010dpc.2_Intron|MRO_uc002lex.3_Missense_Mutation_p.P191S	NM_031939	NP_114145	Q9BYG7	MSTRO_HUMAN	maestro isoform a	191						nucleolus	binding				0		Colorectal(6;0.0596)		Colorectal(21;0.082)		GCAACCTGGGGATTTCTGTCC	0.488													26	155					0	0	0.006320	0	0
DCC	1630	broad.mit.edu	37	18	51025778	51025778	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:51025778C>T	uc002lfe.1	+	27	4596	c.4009C>T	c.(4009-4011)CGA>TGA	p.R1337*	DCC_uc010dpf.1_Nonsense_Mutation_p.R970*	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1337	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AGCTTGTGTTCGACCAACTCA	0.532													24	73					0	0	0.002780	0	0
ALPK2	115701	broad.mit.edu	37	18	56184167	56184167	+	Silent	SNP	G	A	A	rs61732436		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:56184167G>A	uc002lhj.3	-	9	6127	c.5913C>T	c.(5911-5913)ATC>ATT	p.I1971I		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1971	Alpha-type protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						AGTTCCTTTGGATGAGCTCAT	0.502													25	133					0	0	0.006320	0	0
MALT1	10892	broad.mit.edu	37	18	56390422	56390422	+	Silent	SNP	T	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:56390422T>G	uc002lhm.1	+	10	1419	c.1161T>G	c.(1159-1161)ACT>ACG	p.T387T	MALT1_uc002lhn.1_Silent_p.T376T	NM_006785	NP_006776	Q9UDY8	MALT1_HUMAN	mucosa associated lymphoid tissue lymphoma	387	Caspase-like.				activation of NF-kappaB-inducing kinase activity|anti-apoptosis|nuclear export|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of protein ubiquitination|positive regulation of T cell cytokine production|protein oligomerization|proteolysis|T cell receptor signaling pathway	CBM complex|cytosol|nucleus|perinuclear region of cytoplasm	cysteine-type endopeptidase activity|protein self-association|signal transducer activity|ubiquitin-protein ligase activity			ovary(2)|lung(1)|central_nervous_system(1)	4						TGGATCTTACTGAATATGAGA	0.383			T	BIRC3	MALT								7	52					0	0	0.004482	0	0
SERPINB4	6318	broad.mit.edu	37	18	61310397	61310397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:61310397G>A	uc002ljf.2	-	3	306	c.220C>T	c.(220-222)CAT>TAT	p.H74Y	SERPINB4_uc002lje.2_Missense_Mutation_p.H74Y|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	74					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						TGACTCACATGATATGTTGCA	0.408													6	25					0	0	0.001984	0	0
SERPINB7	8710	broad.mit.edu	37	18	61449734	61449734	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:61449734G>A	uc002ljl.2	+	2	224	c.128G>A	c.(127-129)CGC>CAC	p.R43H	SERPINB7_uc002ljm.2_Missense_Mutation_p.R43H|SERPINB7_uc010xet.1_Missense_Mutation_p.R43H|SERPINB7_uc010dqg.2_Missense_Mutation_p.R43H	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	43					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				GCCCTGGTCCGCTTGGGCGCT	0.468													15	65					0	0	0.008871	0	0
CCDC102B	79839	broad.mit.edu	37	18	66678318	66678318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:66678318G>A	uc002lkk.2	+	9	1634	c.1411G>A	c.(1411-1413)GGA>AGA	p.G471R	CCDC102B_uc002lki.2_Missense_Mutation_p.G471R	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	471	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				ACTAAAGCAGGGACTCAATCA	0.383													4	32					0	0	0.000248	0	0
RTTN	25914	broad.mit.edu	37	18	67671411	67671411	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:67671411G>A	uc002lkp.2	-	49	6725	c.6657C>T	c.(6655-6657)CTC>CTT	p.L2219L	RTTN_uc002lko.2_RNA|RTTN_uc010xfb.1_Silent_p.L1307L|RTTN_uc002lkn.2_Intron|RTTN_uc010dqp.2_Silent_p.L471L	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	2219							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				GGAGCTGCACGAGGTTTTCAA	0.413													8	39					0	0	0.006214	0	0
CDC34	997	broad.mit.edu	37	19	535879	535879	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:535879G>A	uc002lov.2	+	2	419	c.220G>A	c.(220-222)GCC>ACC	p.A74T		NM_004359	NP_004350	P49427	UB2R1_HUMAN	ubiquitin-conjugating enzyme Cdc34	74					DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|negative regulation of cAMP-mediated signaling|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination	cytoplasm|nucleus	ATP binding|protein binding|ubiquitin-protein ligase activity				0		all_cancers(10;1.94e-35)|all_epithelial(18;5.94e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCTCCACCAGCCTTTCGGTT	0.647													68	229					0	0	0.003610	0	0
TLE2	7089	broad.mit.edu	37	19	3013779	3013779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:3013779G>A	uc002lww.2	-	11	1024	c.761C>T	c.(760-762)CCC>CTC	p.P254L	TLE2_uc010xhb.1_5'UTR|TLE2_uc010dth.2_Missense_Mutation_p.P255L|TLE2_uc010xhc.1_Missense_Mutation_p.P132L|TLE2_uc010dti.2_Missense_Mutation_p.P268L|TLE2_uc010xhd.1_Missense_Mutation_p.P162L	NM_003260	NP_003251	Q04725	TLE2_HUMAN	transducin-like enhancer protein 2 isoform 1	254	CCN domain.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTTTCCGCAGGGGGTGGTAGC	0.607													16	104					0	0	0.004007	0	0
C19orf29	58509	broad.mit.edu	37	19	3612182	3612182	+	Silent	SNP	G	T	T	rs147636108	by1000genomes	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:3612182G>T	uc002lyh.2	-	10	2069	c.2016C>A	c.(2014-2016)ATC>ATA	p.I672I	C19orf29_uc010xho.1_Silent_p.I131I|C19orf29_uc010dtn.2_Silent_p.I520I|C19orf29_uc002lyi.3_Silent_p.I672I|C19orf29_uc010dto.2_RNA	NM_001080543	NP_001074012	Q8WUQ7	CS029_HUMAN	chromosome 19 open reading frame 29	672						catalytic step 2 spliceosome	protein binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		ATCCCTGCACGATCTTGGGCG	0.582													51	165					1.27862e-28	1.45032e-28	0.003610	1	0
TICAM1	148022	broad.mit.edu	37	19	4817259	4817259	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:4817259G>A	uc002mbi.2	-	2	1382	c.1131C>T	c.(1129-1131)ACC>ACT	p.T377T		NM_182919	NP_891549	Q8IUC6	TCAM1_HUMAN	toll-like receptor adaptor molecule 1	377					apoptosis|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein kinase binding|signal transducer activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		GGGAGGAGGGGGTCAGGTGAG	0.478													12	57					0	0	0.001368	0	0
ZNRF4	148066	broad.mit.edu	37	19	5456284	5456284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:5456284C>T	uc002mca.3	+	1	859	c.782C>T	c.(781-783)ACC>ATC	p.T261I		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	261	Helical; (Potential).					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		CTGGGCTGTACCCTGGCCCTG	0.667													14	61					0	0	0.001855	0	0
MUC16	94025	broad.mit.edu	37	19	9010677	9010677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:9010677C>T	uc002mkp.2	-	38	39188	c.38984G>A	c.(38983-38985)GGG>GAG	p.G12995E	MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12997	Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGATGGAGTCCCTGAGGTCCC	0.522													8	38					0	0	0.004482	0	0
MUC16	94025	broad.mit.edu	37	19	9058282	9058282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:9058282C>T	uc002mkp.2	-	3	29368	c.29164G>A	c.(29164-29166)GAA>AAA	p.E9722K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9724	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTAGTTGTTTCCACAAAGCGA	0.488													4	23					0	0	0.000248	0	0
MUC16	94025	broad.mit.edu	37	19	9060313	9060313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:9060313C>T	uc002mkp.2	-	3	27337	c.27133G>A	c.(27133-27135)GGA>AGA	p.G9045R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9047	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGCTAGGTCCTCTGCTAGAG	0.498													6	59					0	0	0.001168	0	0
MUC16	94025	broad.mit.edu	37	19	9065879	9065879	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:9065879G>A	uc002mkp.2	-	3	21771	c.21567C>T	c.(21565-21567)CCC>CCT	p.P7189P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7191	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCCAGAGCTGGGAATCTCCA	0.502													30	113					0	0	0.007291	0	0
MUC16	94025	broad.mit.edu	37	19	9082421	9082421	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:9082421C>T	uc002mkp.2	-	1	9598	c.9394G>A	c.(9394-9396)GAA>AAA	p.E3132K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3133	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCTGTGGGTTCTGTGGGAGAA	0.483													33	113					0	0	0.002836	0	0
MUC16	94025	broad.mit.edu	37	19	9082689	9082689	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:9082689G>A	uc002mkp.2	-	1	9330	c.9126C>T	c.(9124-9126)TTC>TTT	p.F3042F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3043	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGGGGAAAGGAAGCTTGTTT	0.483													25	67					0	0	0.003330	0	0
C3P1	388503	broad.mit.edu	37	19	10169529	10169529	+	RNA	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:10169529G>A	uc010dwx.1	+	18		c.2164G>A				NR_027300				Synthetic construct DNA, clone: pF1KB7402, Homo sapiens LOC388503 gene, without stop codon, in Flexi system.												0						TTCCTGGAGAGAAAACTTCCC	0.562													12	62					0	0	0.004007	0	0
ZNF823	55552	broad.mit.edu	37	19	11832642	11832642	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:11832642G>A	uc002msm.2	-	4	1833	c.1707C>T	c.(1705-1707)TTC>TTT	p.F569F	ZNF823_uc010xmd.1_Silent_p.F387F|ZNF823_uc010dyi.1_Silent_p.F525F	NM_001080493	NP_001073962	P16415	ZN823_HUMAN	ZFP-36 for a zinc finger protein	569	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GTCCTCGAAGGAAACGGGAAC	0.428										HNSCC(68;0.2)			10	48					0	0	0.006214	0	0
ZNF878	729747	broad.mit.edu	37	19	12155515	12155515	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:12155515T>A	uc002mta.1	-	5	842	c.842A>T	c.(841-843)AAA>ATA	p.K281I		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	234	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						AAAAAAGGCTTTCCCACATAT	0.398													13	54					0	0	0.002450	0	0
GADD45GIP1	90480	broad.mit.edu	37	19	13065339	13065339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:13065339C>T	uc002mwb.2	-	2	376	c.352G>A	c.(352-354)GAG>AAG	p.E118K		NM_052850	NP_443082	Q8TAE8	G45IP_HUMAN	growth arrest and DNA-damage-inducible, gamma	118	Potential.				cell cycle|interspecies interaction between organisms	nucleus	protein binding			ovary(1)|skin(1)	2						ATGTGCTGCTCCCTGCAGGGG	0.617													9	29					0	0	0.004482	0	0
CC2D1A	54862	broad.mit.edu	37	19	14028885	14028885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:14028885C>T	uc002mxo.2	+	7	1050	c.751C>T	c.(751-753)CCC>TCC	p.P251S	CC2D1A_uc002mxn.2_Missense_Mutation_p.P150S|CC2D1A_uc002mxp.2_Missense_Mutation_p.P251S|CC2D1A_uc010dzh.2_5'UTR|CC2D1A_uc002mxq.1_5'Flank	NM_017721	NP_060191	Q6P1N0	C2D1A_HUMAN	coiled-coil and C2 domain containing 1A	251	Pro-rich.				positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|plasma membrane	DNA binding|signal transducer activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.49e-23)			CCTTCCAGGTCCCTGCAGCCC	0.532													5	47					0	0	0.001168	0	0
HSH2D	84941	broad.mit.edu	37	19	16268269	16268269	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:16268269G>A	uc002ndp.3	+	9	1254	c.723G>A	c.(721-723)GTG>GTA	p.V241V	HSH2D_uc002ndr.2_Missense_Mutation_p.D185N|HSH2D_uc010ead.2_RNA	NM_032855	NP_116244	Q96JZ2	HSH2D_HUMAN	hematopoietic SH2 domain containing	241						cytoplasm|nucleus					0						GATCCACGGTGATCTCAGGCC	0.597													17	51					0	0	0.007413	0	0
NWD1	284434	broad.mit.edu	37	19	16902353	16902353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:16902353G>A	uc002neu.3	+	14	3555	c.3133G>A	c.(3133-3135)GAA>AAA	p.E1045K	NWD1_uc002net.3_Missense_Mutation_p.E910K|NWD1_uc002nev.3_Missense_Mutation_p.E839K			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1045	WD 6.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						CAGCATCAAAGAAGAAACACC	0.507													11	67					0	0	0.008291	0	0
ANO8	57719	broad.mit.edu	37	19	17444280	17444280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:17444280G>A	uc002ngf.2	-	3	460	c.301C>T	c.(301-303)CAC>TAC	p.H101Y	ANO8_uc010eap.2_RNA|GTPBP3_uc010xpo.1_5'Flank	NM_020959	NP_066010	Q9HCE9	ANO8_HUMAN	anoctamin 8	101	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(3)	3						GTGTGGCGGTGGTGGCGGACT	0.657													17	112					0	0	0.008871	0	0
MAST3	23031	broad.mit.edu	37	19	18248078	18248078	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:18248078T>C	uc002nhz.3	+	18	1915	c.1915T>C	c.(1915-1917)TTT>CTT	p.F639L		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	639	Protein kinase.						ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						GCAGCACCCCTTTTTCCTGGC	0.612													3	63					0	0	0.004672	0	0
FKBP8	23770	broad.mit.edu	37	19	18649187	18649187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:18649187G>A	uc002njk.1	-	5	721	c.608C>T	c.(607-609)GCT>GTT	p.A203V	FKBP8_uc002nji.1_Missense_Mutation_p.A41V|FKBP8_uc010xqi.1_Missense_Mutation_p.A232V|FKBP8_uc002njj.1_Missense_Mutation_p.A204V|FKBP8_uc002njl.1_Missense_Mutation_p.A204V|FKBP8_uc002njm.1_Missense_Mutation_p.A203V|FKBP8_uc010ebr.1_Missense_Mutation_p.A42V|FKBP8_uc002njn.2_RNA	NM_012181	NP_036313	Q14318	FKBP8_HUMAN	FK506-binding protein 8	203	PPIase FKBP-type.				apoptosis|interspecies interaction between organisms|intracellular signal transduction|protein folding	integral to endoplasmic reticulum membrane|mitochondrial membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|protein binding			ovary(1)	1						CCCGTCCACAGCCGTCTTCAG	0.701													7	37					0	0	0.001984	0	0
HOMER3	9454	broad.mit.edu	37	19	19042209	19042209	+	Silent	SNP	G	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:19042209G>C	uc002nku.2	-	8	1472	c.819C>G	c.(817-819)ACC>ACG	p.T273T	HOMER3_uc002nko.1_RNA|HOMER3_uc002nkp.1_RNA|HOMER3_uc010eby.2_Silent_p.T237T|HOMER3_uc010ebz.2_Silent_p.T273T|HOMER3_uc002nkw.2_Silent_p.T273T|HOMER3_uc002nkv.2_Silent_p.T273T	NM_004838	NP_004829	Q9NSC5	HOME3_HUMAN	Homer, neuronal immediate early gene, 3 isoform	273	Potential.				metabotropic glutamate receptor signaling pathway|protein targeting	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	protein binding				0			Epithelial(12;0.0107)			GACTCTTCAGGGTCTGAATCT	0.637													18	82					0	0	0.004990	0	0
ATP13A1	57130	broad.mit.edu	37	19	19766131	19766131	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:19766131T>A	uc002nnh.3	-	11	1556	c.1528A>T	c.(1528-1530)AAG>TAG	p.K510*	ATP13A1_uc002nnf.3_5'UTR|ATP13A1_uc002nng.2_Nonsense_Mutation_p.K392*	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	510	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						TCACAGAGCTTGGCCAGGGCG	0.632													7	36					0	0	0.003080	0	0
LOC284441	284441	broad.mit.edu	37	19	20369264	20369265	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:20369264_20369265GG>AA	uc002nov.2	+	1	808_809	c.57_58GG>AA	c.(55-60)ATGGAA>ATAAAA	p.19_20ME>IK		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						ACTACCCTATGGAAAATGGCAT	0.376													16	70					0	0	0.004672	0	0
LOC284441	284441	broad.mit.edu	37	19	20369603	20369603	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:20369603G>A	uc002nov.2	+	1	1147	c.396G>A	c.(394-396)AGG>AGA	p.R132R		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						TTGCTGGGAGGGATATAACTA	0.423													9	28					0	0	0.006214	0	0
ZNF676	163223	broad.mit.edu	37	19	22363644	22363644	+	Missense_Mutation	SNP	G	A	A	rs11671538		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:22363644G>A	uc002nqs.1	-	3	1193	c.875C>T	c.(874-876)TCG>TTG	p.S292L		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	292	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				CTTTGAGGACGAGTTGGAAGC	0.438													12	40					0	0	0.001368	0	0
ZNF99	7652	broad.mit.edu	37	19	22939060	22939060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:22939060G>A	uc010xrh.1	-	8	3058	c.3058C>T	c.(3058-3060)CAT>TAT	p.H1020Y		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				GCTGAAAGATGGTTAAAAGCT	0.368													8	44					0	0	0.006214	0	0
ATP4A	495	broad.mit.edu	37	19	36044004	36044004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:36044004C>T	uc002oal.1	-	18	2715	c.2686G>A	c.(2686-2688)GGG>AGG	p.G896R	ATP4A_uc010eee.1_Missense_Mutation_p.G54R	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	896	Lumenal (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	GCCCGCAGCCCCACGCACAGC	0.602													26	134					0	0	0.005443	0	0
MLL4	9757	broad.mit.edu	37	19	36227864	36227864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:36227864G>A	uc010eei.2	+	33	7349	c.7349G>A	c.(7348-7350)CGA>CAA	p.R2450Q		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	2450	FYR C-terminal.				chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGGCATGCCCGACTCAGACAT	0.607													6	16					0	0	0.001984	0	0
RYR1	6261	broad.mit.edu	37	19	38939119	38939119	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:38939119A>G	uc002oit.2	+	10	1055	c.925A>G	c.(925-927)AAG>GAG	p.K309E	RYR1_uc002oiu.2_Missense_Mutation_p.K309E	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	309	MIR 4.|Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGCTCACACCAAGGCTACCTC	0.652													29	115					0	0	0.002445	0	0
RYR1	6261	broad.mit.edu	37	19	38985093	38985093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:38985093C>T	uc002oit.2	+	39	6506	c.6376C>T	c.(6376-6378)CGG>TGG	p.R2126W	RYR1_uc002oiu.2_Missense_Mutation_p.R2126W|RYR1_uc002oiv.1_5'Flank	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2126	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCTCCTGCACCGGCAGTACGA	0.672													12	60					0	0	0.000978	0	0
FCGBP	8857	broad.mit.edu	37	19	40362950	40362950	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:40362950C>T	uc002omp.3	-	32	15128	c.15120G>A	c.(15118-15120)GAG>GAA	p.E5040E		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	5040	VWFD 12.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			AGGGTGCAGTCTCCTCTGCCA	0.697													7	59					0	0	0.003080	0	0
DMRTC2	63946	broad.mit.edu	37	19	42351549	42351549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:42351549C>T	uc002ors.2	+	2	136	c.53C>T	c.(52-54)CCC>CTC	p.P18L	DMRTC2_uc002orr.1_5'UTR|DMRTC2_uc010xwe.1_Missense_Mutation_p.P18L	NM_001040283	NP_001035373	Q8IXT2	DMRTD_HUMAN	DMRT-like family C2	18					cell differentiation|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0						GACTCTGCCCCCTGGGATGAG	0.632													19	106					0	0	0.002299	0	0
ATP1A3	478	broad.mit.edu	37	19	42489163	42489163	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:42489163G>A	uc002osg.2	-	8	1054	c.900C>T	c.(898-900)TCC>TCT	p.S300S	ATP1A3_uc010xwf.1_Silent_p.S311S|ATP1A3_uc010xwg.1_Silent_p.S270S|ATP1A3_uc010xwh.1_Silent_p.S313S|ATP1A3_uc002osh.2_Silent_p.S300S	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	300	Extracellular (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						CGAGAATGAGGGAGAGGATGA	0.572													5	26					0	0	0.000602	0	0
POU2F2	5452	broad.mit.edu	37	19	42599534	42599534	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:42599534G>A	uc002osp.2	-	11	1102	c.1035C>T	c.(1033-1035)TTC>TTT	p.F345F	POU2F2_uc002osn.2_Silent_p.F329F|POU2F2_uc002oso.2_Silent_p.F118F|POU2F2_uc002osq.2_Silent_p.F329F|POU2F2_uc002osr.1_Silent_p.F345F	NM_002698	NP_002689	P09086	PO2F2_HUMAN	POU domain, class 2, transcription factor 2	345	Homeobox.				humoral immune response|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2		Prostate(69;0.059)				GCCGGTTGCAGAACCAGACGC	0.622													10	45					0	0	0.000978	0	0
PSG3	5671	broad.mit.edu	37	19	43234162	43234162	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:43234162C>T	uc002oue.2	-	4	888	c.756G>A	c.(754-756)AGG>AGA	p.R252R	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Silent_p.R274R	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	252	Ig-like C2-type 2.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				CCTTATTCTCCCTGGGGTTTA	0.502													31	169					0	0	0.003610	0	0
PSG6	5675	broad.mit.edu	37	19	43411093	43411093	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:43411093G>A	uc002ovj.1	-	5	1273	c.1221C>T	c.(1219-1221)TCC>TCT	p.S407S	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Silent_p.S414S|PSG6_uc002ovi.2_Silent_p.S408S|PSG6_uc010xwk.1_Silent_p.S247S|PSG11_uc002ovk.1_Silent_p.S406S|PSG6_uc002ove.1_Silent_p.S197S|PSG6_uc002ovf.1_Silent_p.S314S|PSG6_uc002ovg.1_Silent_p.S407S	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	407					female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TGACTATCATGGATTTGGAGA	0.443													56	176					0	0	0.003610	0	0
ZNF221	7638	broad.mit.edu	37	19	44471067	44471067	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:44471067C>T	uc002oxx.2	+	6	1741	c.1413C>T	c.(1411-1413)GTC>GTT	p.V471V	ZNF221_uc010ejb.1_Silent_p.V471V|ZNF221_uc010xws.1_Silent_p.V471V	NM_013359	NP_037491	Q9UK13	ZN221_HUMAN	zinc finger protein 221	471	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		Prostate(69;0.0352)				ACCAGAGGGTCCACACGGGTG	0.473													7	39					0	0	0.003080	0	0
GLTSCR1	29998	broad.mit.edu	37	19	48183957	48183957	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:48183957C>T	uc002phh.3	+	6	1724	c.1530C>T	c.(1528-1530)ATC>ATT	p.I510I	GLTSCR1_uc002phi.3_Silent_p.I268I	NM_015711	NP_056526	Q9NZM4	GSCR1_HUMAN	glioma tumor suppressor candidate region gene 1	510							protein binding			pancreas(3)	3		all_cancers(25;1.8e-07)|all_lung(116;5.73e-06)|Lung NSC(112;9.69e-06)|all_epithelial(76;2.42e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		all cancers(93;0.000358)|OV - Ovarian serous cystadenocarcinoma(262;0.000576)|Epithelial(262;0.0212)|GBM - Glioblastoma multiforme(486;0.0355)		GACAGCTCATCGCGAACCCCA	0.726													19	57					0	0	0.007413	0	0
FAM83E	54854	broad.mit.edu	37	19	49104458	49104458	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:49104458A>T	uc002pjn.2	-	5	1410	c.1345T>A	c.(1345-1347)TTC>ATC	p.F449I		NM_017708	NP_060178	Q2M2I3	FA83E_HUMAN	hypothetical protein LOC54854	449										ovary(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		TCCCCACCGAACCGCCTTCGG	0.701													6	24					0	0	0.001984	0	0
SCAF1	58506	broad.mit.edu	37	19	50156263	50156263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:50156263C>T	uc002poq.2	+	7	2741	c.2617C>T	c.(2617-2619)CGC>TGC	p.R873C		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	873					mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		CCGCGAGAGTCGCTCCCCCTT	0.652													6	35					0	0	0.001168	0	0
MYH14	79784	broad.mit.edu	37	19	50796837	50796837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:50796837G>A	uc002prr.1	+	37	5286	c.5239G>A	c.(5239-5241)GAG>AAG	p.E1747K	MYH14_uc010enu.1_Missense_Mutation_p.E1788K|MYH14_uc002prq.1_Missense_Mutation_p.E1755K|MYH14_uc010ycb.1_Missense_Mutation_p.E98K|MYH14_uc002prs.1_Missense_Mutation_p.E98K	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1747	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		CATTCTGGAGGAGAAGCGTCA	0.612													11	23					0	0	0.001368	0	0
POLD1	5424	broad.mit.edu	37	19	50905548	50905548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:50905548C>T	uc002psb.3	+	6	732	c.676C>T	c.(676-678)CTC>TTC	p.L226F	POLD1_uc002psc.3_Missense_Mutation_p.L226F|POLD1_uc010enx.2_RNA|POLD1_uc010eny.2_Missense_Mutation_p.L226F	NM_002691	NP_002682	P28340	DPOD1_HUMAN	DNA-directed DNA polymerase delta 1	226					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|DNA synthesis involved in DNA repair|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|response to UV|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm|nucleotide-excision repair complex	3'-5'-exodeoxyribonuclease activity|chromatin binding|DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding|protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2		all_neural(266;0.0571)		OV - Ovarian serous cystadenocarcinoma(262;0.00794)|GBM - Glioblastoma multiforme(134;0.0195)		GGCCCGCCGTCTCCTGGAACA	0.692								DNA_polymerases_(catalytic_subunits)					12	43					0	0	0.001368	0	0
SYT3	84258	broad.mit.edu	37	19	51140553	51140553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:51140553C>T	uc002pst.2	-	1	750	c.116G>A	c.(115-117)CGA>CAA	p.R39Q	SYT3_uc002psv.2_Missense_Mutation_p.R39Q|SYT3_uc010ycd.1_Missense_Mutation_p.R39Q	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	39	Vesicular (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		GCCTCGGATTCGGTCATTGAA	0.632													24	107					0	0	0.004656	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51957508	51957508	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:51957508C>T	uc002pwt.2	-	6	1277	c.1210G>A	c.(1210-1212)GAA>AAA	p.E404K	SIGLEC8_uc010yda.1_Missense_Mutation_p.E295K|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Missense_Mutation_p.E311K	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	404	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TTTGCATCTTCCATGCCTGTA	0.597													16	102					0	0	0.007413	0	0
CEACAM18	729767	broad.mit.edu	37	19	51986565	51986565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:51986565C>T	uc002pwv.1	+	5	1151	c.1151C>T	c.(1150-1152)CCT>CTT	p.P384L		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	384						integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		AGCAGCTCCCCTCCAGGCTCA	0.602													5	27					0	0	0.000602	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52131315	52131315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:52131315G>A	uc002pxe.2	-	5	908	c.769C>T	c.(769-771)CTT>TTT	p.L257F		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	257	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		AGGACCGGAAGGTATGAGGTG	0.622													14	65					0	0	0.002450	0	0
ZNF808	388558	broad.mit.edu	37	19	53057071	53057071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:53057071C>T	uc010epq.1	+	5	1079	c.902C>T	c.(901-903)TCC>TTC	p.S301F	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	301	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		TACAAGTCATCCCTTACATGC	0.398													16	76					0	0	0.003163	0	0
BIRC8	112401	broad.mit.edu	37	19	53793219	53793219	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:53793219G>A	uc002qbk.2	-	1	1657	c.409C>T	c.(409-411)CAA>TAA	p.Q137*		NM_033341	NP_203127	Q96P09	BIRC8_HUMAN	baculoviral IAP repeat-containing 8	137					apoptosis		zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(134;0.00304)		CCAGATGTTTGAATTCTTTCC	0.373													15	96					0	0	0.003163	0	0
MIR518C	574477	broad.mit.edu	37	19	54212017	54212018	+	RNA	DNP	GG	AA	AA			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:54212017_54212018GG>AA	hsa-mir-518c|MI0003159	+			c.29_30GG>AA			MIR524_hsa-mir-524|MI0003160_5'Flank																	0						GTGACTCTCTGGAGGGAAGCAC	0.406													4	20					0	0	0.004672	0	0
LILRA5	353514	broad.mit.edu	37	19	54823417	54823417	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:54823417C>T	uc002qfe.2	-	4	246	c.126G>A	c.(124-126)GGG>GGA	p.G42G	LILRA5_uc002qff.2_Silent_p.G30G|LILRA5_uc010yev.1_Silent_p.G42G|LILRA5_uc010yew.1_Silent_p.G30G|LILRA5_uc002qfh.1_Silent_p.G30G|LILRA5_uc002qfg.1_Silent_p.G42G	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	42	Extracellular (Potential).				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TGGAGAGGTTCCCTGGAAGGA	0.622													9	54					0	0	0.008291	0	0
KIR3DL2	3812	broad.mit.edu	37	19	55363708	55363708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:55363708C>T	uc002qho.3	+	3	359	c.326C>T	c.(325-327)CCC>CTC	p.P109L	KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc002qhn.1_Intron|KIR3DL2_uc010esh.2_Missense_Mutation_p.P109L	NM_006737	NP_006728	P43630	KI3L2_HUMAN	killer cell immunoglobulin-like receptor, three	109	Extracellular (Potential).				cellular defense response|regulation of immune response	integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0192)		TGGTCGGCACCCAGCAACCCC	0.607													24	100					0	0	0.004656	0	0
FCAR	2204	broad.mit.edu	37	19	55396759	55396759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:55396759G>A	uc002qhr.1	+	3	380	c.183G>A	c.(181-183)ATG>ATA	p.M61I	FCAR_uc002qhq.2_Missense_Mutation_p.M61I|FCAR_uc002qhs.1_RNA|FCAR_uc002qht.1_Missense_Mutation_p.M34I|FCAR_uc010esi.1_Missense_Mutation_p.M34I|FCAR_uc002qhu.1_Missense_Mutation_p.M61I|FCAR_uc002qhv.1_Missense_Mutation_p.M61I|FCAR_uc002qhw.1_Missense_Mutation_p.M49I|FCAR_uc002qhx.1_Missense_Mutation_p.M49I|FCAR_uc002qhy.1_Missense_Mutation_p.M49I|FCAR_uc002qhz.1_Missense_Mutation_p.M49I|FCAR_uc002qia.1_Intron	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	61	Extracellular (Potential).|Ig-like C2-type 1.				immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		CCCAGCTGATGATCATAAAAA	0.468													14	60					0	0	0.002450	0	0
NLRP7	199713	broad.mit.edu	37	19	55450331	55450331	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:55450331T>G	uc002qih.3	-	4	1932	c.1856A>C	c.(1855-1857)AAA>ACA	p.K619T	NLRP7_uc002qig.3_Missense_Mutation_p.K619T|NLRP7_uc002qii.3_Missense_Mutation_p.K619T|NLRP7_uc010esk.2_Missense_Mutation_p.K619T|NLRP7_uc010esl.2_Missense_Mutation_p.K647T	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	619	LRR 1.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		CAGTGAGAGTTTCTGCAAGTC	0.443													4	51					0	0	0.000248	0	0
NLRP7	199713	broad.mit.edu	37	19	55450616	55450616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:55450616C>T	uc002qih.3	-	4	1647	c.1571G>A	c.(1570-1572)GGC>GAC	p.G524D	NLRP7_uc002qig.3_Missense_Mutation_p.G524D|NLRP7_uc002qii.3_Missense_Mutation_p.G524D|NLRP7_uc010esk.2_Missense_Mutation_p.G524D|NLRP7_uc010esl.2_Missense_Mutation_p.G552D	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	524							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GTTAGCGAGGCCGAATAAGAA	0.532													13	60					0	0	0.001855	0	0
NLRP2	55655	broad.mit.edu	37	19	55489158	55489158	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:55489158G>A	uc002qij.2	+	4	450	c.364G>A	c.(364-366)GAA>AAA	p.E122K	NLRP2_uc010yfp.1_Missense_Mutation_p.E99K|NLRP2_uc010esn.2_Intron|NLRP2_uc010eso.2_Missense_Mutation_p.E122K|NLRP2_uc010esp.2_Missense_Mutation_p.E122K	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	122					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		AGACGTGGACGAAATGCTGGA	0.552													21	50					0	0	0.002299	0	0
PEG3	5178	broad.mit.edu	37	19	57326320	57326320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:57326320C>T	uc002qnu.2	-	7	3841	c.3490G>A	c.(3490-3492)GAA>AAA	p.E1164K	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.E1135K|PEG3_uc002qnv.2_Missense_Mutation_p.E1164K|PEG3_uc002qnw.2_Missense_Mutation_p.E1040K|PEG3_uc002qnx.2_Missense_Mutation_p.E1038K|PEG3_uc010etr.2_Missense_Mutation_p.E1164K	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1164	C2H2-type 7.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TTTGGACATTCATACAGCTGC	0.448													24	99					0	0	0.002780	0	0
ZNF584	201514	broad.mit.edu	37	19	58921369	58921369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:58921369C>T	uc002qsp.2	+	2	532	c.80C>T	c.(79-81)TCC>TTC	p.S27F	ZNF584_uc010yia.1_Intron|ZNF584_uc002qsr.2_Intron|ZNF584_uc010yib.1_Missense_Mutation_p.S19F	NM_173548	NP_775819	Q8IVC4	ZN584_HUMAN	zinc finger protein 584	27	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;5.3e-17)|all_epithelial(17;3.71e-12)|Lung NSC(17;8.3e-05)|Colorectal(82;0.000147)|all_lung(17;0.000386)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0271)		GTATATTTCTCCAGGGAGGAG	0.493													20	60					0	0	0.002299	0	0
TTC15	51112	broad.mit.edu	37	2	3447553	3447553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:3447553C>T	uc002qxm.1	+	6	1627	c.1421C>T	c.(1420-1422)TCC>TTC	p.S474F	TTC15_uc002qxn.1_Missense_Mutation_p.S474F|TTC15_uc010ewm.1_Missense_Mutation_p.S474F	NM_016030	NP_057114	Q8WVT3	TTC15_HUMAN	tetratricopeptide repeat domain 15	474							binding			ovary(2)|breast(1)|pancreas(1)	4	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)	all_cancers(51;0.214)		OV - Ovarian serous cystadenocarcinoma(76;0.0402)|Epithelial(75;0.0986)|all cancers(51;0.149)		ATTCCAGGCTCCATGGTCCCC	0.547													5	30					0	0	0.000602	0	0
NBAS	51594	broad.mit.edu	37	2	15448367	15448367	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:15448367G>A	uc002rcc.1	-	40	4796	c.4770C>T	c.(4768-4770)TTC>TTT	p.F1590F	NBAS_uc010exl.1_Silent_p.F662F|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	1590										ovary(2)|liver(1)|skin(1)	4						ACTTGTCCCTGAAACATGGGG	0.453													25	73					0	0	0.007291	0	0
PUM2	23369	broad.mit.edu	37	2	20508338	20508338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:20508338G>A	uc002rds.1	-	5	549	c.526C>T	c.(526-528)CCT>TCT	p.P176S	PUM2_uc002rdt.1_Missense_Mutation_p.P176S|PUM2_uc002rdr.2_Missense_Mutation_p.P115S|PUM2_uc010yjy.1_Missense_Mutation_p.P176S|PUM2_uc002rdu.1_Missense_Mutation_p.P176S|PUM2_uc010yjz.1_Missense_Mutation_p.P115S	NM_015317	NP_056132	Q8TB72	PUM2_HUMAN	pumilio homolog 2	176	Interaction with SNAPIN.				regulation of translation	perinuclear region of cytoplasm|stress granule	protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CGACTTCCAGGAGTACGACTA	0.398													9	48					0	0	0.006214	0	0
GPR113	165082	broad.mit.edu	37	2	26532440	26532440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:26532440C>T	uc010yky.1	-	13	2997	c.2944G>A	c.(2944-2946)GAA>AAA	p.E982K	GPR113_uc002rhb.1_Missense_Mutation_p.E654K|GPR113_uc010eyk.1_Missense_Mutation_p.E852K|GPR113_uc002rhc.1_Missense_Mutation_p.E654K|GPR113_uc002rhd.1_RNA	NM_001145169	NP_001138641	Q8IZF5	GP113_HUMAN	G-protein coupled receptor 113 isoform 2	Error:Variant_position_missing_in_Q8IZF5_after_alignment					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATGCAGCCTTCATTTGTGGCC	0.507													4	15					0	0	0.000248	0	0
GTF3C2	2976	broad.mit.edu	37	2	27550131	27550131	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:27550131G>A	uc002rjv.1	-	19	2793	c.2430C>T	c.(2428-2430)CTC>CTT	p.L810L	MPV17_uc002rjt.2_5'Flank|GTF3C2_uc010eyy.1_Silent_p.L265L|GTF3C2_uc002rju.1_Silent_p.L821L|GTF3C2_uc002rjw.1_Silent_p.L810L	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	810						transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GTTCTCTACGGAGCAGATCAT	0.438													7	36					0	0	0.003080	0	0
ALK	238	broad.mit.edu	37	2	29450451	29450451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:29450451G>A	uc002rmy.2	-	17	3810	c.2903C>T	c.(2902-2904)CCA>CTA	p.P968L		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	968	Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	TTTTAAAGCTGGGGTGTACAG	0.517			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				30	107					0	0	0.002096	0	0
HEATR5B	54497	broad.mit.edu	37	2	37235774	37235774	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:37235774G>A	uc002rpp.1	-	28	4598	c.4502C>T	c.(4501-4503)TCT>TTT	p.S1501F	HEATR5B_uc010ezy.1_Missense_Mutation_p.S85F|HEATR5B_uc002rpq.3_Missense_Mutation_p.S85F	NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	1501							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				AAGCTGACTAGAAAATTCGGC	0.378													5	34					0	0	0.000602	0	0
DHX57	90957	broad.mit.edu	37	2	39090550	39090550	+	Silent	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:39090550T>C	uc002rrf.2	-	3	435	c.336A>G	c.(334-336)AAA>AAG	p.K112K	DHX57_uc002rre.2_5'UTR|DHX57_uc002rrg.2_Silent_p.K112K	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	112	Potential.						ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				GGAGAAGAGCTTTCACTTTCT	0.393													17	90					0	0	0.004990	0	0
FSHR	2492	broad.mit.edu	37	2	49217773	49217773	+	Silent	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:49217773T>C	uc002rww.2	-	5	452	c.378A>G	c.(376-378)TTA>TTG	p.L126L	FSHR_uc002rwx.2_Silent_p.L126L|FSHR_uc010fbn.2_Silent_p.L126L|FSHR_uc010fbo.1_RNA	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	126	Extracellular (Potential).|LRR 4.				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	TGTTGGATATTAACCTAGAGA	0.333									Gonadal_Dysgenesis_46_XX				11	53					0	0	0.000978	0	0
C2orf86	51057	broad.mit.edu	37	2	63660906	63660906	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:63660906G>A	uc002sch.2	-	9	1244	c.798C>T	c.(796-798)CTC>CTT	p.L266L	C2orf86_uc002sce.2_RNA|C2orf86_uc002scf.2_Silent_p.L107L|C2orf86_uc010ypu.1_RNA|C2orf86_uc002scg.2_Silent_p.L74L|C2orf86_uc002sci.1_Silent_p.L242L|C2orf86_uc010fcr.1_Silent_p.L156L	NM_015910	NP_056994	O95876	FRITZ_HUMAN	hypothetical protein LOC51057 isoform 2	266					cilium morphogenesis|regulation of embryonic cell shape|regulation of protein localization|septin cytoskeleton organization	cilium axoneme|cytoplasm|cytoskeleton|plasma membrane					0						CATAACCCAGGAGGAGTAGAT	0.383													6	39					0	0	0.001984	0	0
VPS54	51542	broad.mit.edu	37	2	64211013	64211013	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:64211013G>A	uc002scq.2	-	2	284	c.121C>T	c.(121-123)CCC>TCC	p.P41S	VPS54_uc002scp.2_Missense_Mutation_p.P41S	NM_016516	NP_057600	Q9P1Q0	VPS54_HUMAN	vacuolar protein sorting 54 isoform 1	41					protein transport|retrograde transport, endosome to Golgi						0						GGTTCCTTGGGACACACATCT	0.383													25	96					0	0	0.007291	0	0
GKN1	56287	broad.mit.edu	37	2	69204770	69204770	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:69204770A>G	uc002sfc.2	+	3	173	c.110A>G	c.(109-111)AAT>AGT	p.N37S		NM_019617	NP_062563	Q9NS71	GKN1_HUMAN	18 kDa antrum mucosa protein precursor	37					digestion|positive regulation of cell division	extracellular region				breast(1)	1						AAACTTCAGAATATCAACGTC	0.373													6	38					0	0	0.001168	0	0
AAK1	22848	broad.mit.edu	37	2	69707998	69707998	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:69707998G>A	uc002sfp.2	-	19	3068	c.2563C>T	c.(2563-2565)CGC>TGC	p.R855C		NM_014911	NP_055726	Q2M2I8	AAK1_HUMAN	AP2 associated kinase 1	855						coated pit|mitochondrion|plasma membrane	ATP binding|protein serine/threonine kinase activity				0						TGACCTGTGCGATTCGAGGTC	0.552													4	7					0	0	0.000248	0	0
C2orf42	54980	broad.mit.edu	37	2	70387889	70387889	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:70387889G>A	uc002sgh.2	-	9	1712	c.1384C>T	c.(1384-1386)CAG>TAG	p.Q462*		NM_017880	NP_060350	Q9NWW7	CB042_HUMAN	hypothetical protein LOC54980	462											0						TCTCGGTTCTGGATAAAGCTA	0.428													6	39					0	0	0.001984	0	0
ZNF638	27332	broad.mit.edu	37	2	71591308	71591308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:71591308C>T	uc002shx.2	+	5	1962	c.1643C>T	c.(1642-1644)CCA>CTA	p.P548L	ZNF638_uc010fec.2_Missense_Mutation_p.P654L|ZNF638_uc010yqw.1_Missense_Mutation_p.P127L|ZNF638_uc002shw.2_Missense_Mutation_p.P548L|ZNF638_uc002shy.2_Missense_Mutation_p.P548L|ZNF638_uc002shz.2_Missense_Mutation_p.P548L|ZNF638_uc002sia.2_Missense_Mutation_p.P548L|ZNF638_uc002sib.1_Missense_Mutation_p.P548L|ZNF638_uc010fed.2_5'Flank	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	548	Arg-rich.				RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						ATTAGAAATCCATTTAGAGGT	0.423													9	32					0	0	0.004482	0	0
DYSF	8291	broad.mit.edu	37	2	71840531	71840531	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:71840531C>T	uc002sie.2	+	40	4777	c.4401C>T	c.(4399-4401)ATC>ATT	p.I1467I	DYSF_uc010feg.2_Silent_p.I1498I|DYSF_uc010feh.2_Silent_p.I1453I|DYSF_uc002sig.3_Silent_p.I1453I|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.I1467I|DYSF_uc010fef.2_Silent_p.I1484I|DYSF_uc010fei.2_Silent_p.I1484I|DYSF_uc010fek.2_Silent_p.I1485I|DYSF_uc010fej.2_Silent_p.I1454I|DYSF_uc010fel.2_Silent_p.I1454I|DYSF_uc010feo.2_Silent_p.I1499I|DYSF_uc010fem.2_Silent_p.I1468I|DYSF_uc010fen.2_Silent_p.I1485I|DYSF_uc002sif.2_Silent_p.I1468I|DYSF_uc010yqy.1_Silent_p.I348I|DYSF_uc010yqz.1_Silent_p.I207I	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1467	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						AGCCCCTCATCCCCATCCAGG	0.582													6	20					0	0	0.003080	0	0
EGR4	1961	broad.mit.edu	37	2	73519395	73519395	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:73519395C>T	uc010yrj.1	-	2	1035	c.960G>A	c.(958-960)GGG>GGA	p.G320G	EGR4_uc010yrk.1_Silent_p.G319G	NM_001965	NP_001956	Q05215	EGR4_HUMAN	early growth response 4	216						intracellular	nucleic acid binding|zinc ion binding				0						ACCCACAGTTCCCTGGGGCCC	0.672													4	19					0	0	0.000602	0	0
ALMS1	7840	broad.mit.edu	37	2	73677820	73677820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:73677820G>A	uc002sje.1	+	10	4280	c.4169G>A	c.(4168-4170)AGT>AAT	p.S1390N	ALMS1_uc002sjf.1_Missense_Mutation_p.S1346N|ALMS1_uc002sjg.2_Missense_Mutation_p.S776N|ALMS1_uc002sjh.1_Missense_Mutation_p.S776N	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1388	18.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						GAGAAGCCGAGTATTTTCTAC	0.478													22	80					0	0	0.002299	0	0
ALMS1	7840	broad.mit.edu	37	2	73716847	73716847	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:73716847C>T	uc002sje.1	+	12	7875	c.7764C>T	c.(7762-7764)TTC>TTT	p.F2588F	ALMS1_uc002sjf.1_Silent_p.F2544F|ALMS1_uc002sjg.2_Silent_p.F1974F|ALMS1_uc002sjh.1_Silent_p.F1974F	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	2586					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						AGGGATGTTTCCGGACTCTAA	0.458													17	71					0	0	0.004007	0	0
CTNNA2	1496	broad.mit.edu	37	2	79971629	79971629	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:79971629A>T	uc010ysh.1	+	2	224	c.219A>T	c.(217-219)GAA>GAT	p.E73D	CTNNA2_uc010yse.1_Missense_Mutation_p.E73D|CTNNA2_uc010ysf.1_Missense_Mutation_p.E73D|CTNNA2_uc010ysg.1_Missense_Mutation_p.E73D	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	73					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						ATTTCCTGGAAAAGGGTGAAC	0.458													11	26					0	0	0.008291	0	0
GGCX	2677	broad.mit.edu	37	2	85788065	85788065	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:85788065C>T	uc002sps.2	-	2	193	c.87G>A	c.(85-87)AGG>AGA	p.R29R	GGCX_uc010yss.1_5'Flank|GGCX_uc010yst.1_Intron	NM_000821	NP_000812	P38435	VKGC_HUMAN	gamma-glutamyl carboxylase isoform 1	29	Cytoplasmic (Potential).				blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification	endoplasmic reticulum membrane|integral to membrane|membrane fraction	gamma-glutamyl carboxylase activity			ovary(1)	1					Anisindione(DB01125)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Drotrecogin alfa(DB00055)|L-Glutamic Acid(DB00142)|Menadione(DB00170)|Phytonadione(DB01022)	GGCTGTCCTGCCTGGGCCCTG	0.507													14	212					0	0	0.004007	0	0
RMND5A	64795	broad.mit.edu	37	2	86979111	86979111	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:86979111C>T	uc010ytm.1	+	3	755	c.378C>T	c.(376-378)TTC>TTT	p.F126F	RMND5A_uc002srs.3_Intron|RMND5A_uc002srr.2_Silent_p.F126F	NM_022780	NP_073617	Q9H871	RMD5A_HUMAN	required for meiotic nuclear division 5 homolog	126	LisH.									ovary(1)|skin(1)	2						TGGAGCACTTCTTTCGACAAG	0.483													5	40					0	0	0.001168	0	0
FABP1	2168	broad.mit.edu	37	2	88425859	88425859	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:88425859C>T	uc002sst.1	-	2	118	c.76G>A	c.(76-78)GAA>AAA	p.E26K	FABP1_uc002ssu.2_Missense_Mutation_p.E26K	NM_001443	NP_001434	P07148	FABPL_HUMAN	fatty acid binding protein 1, liver	26					organ morphogenesis						0						ATGAGCTCTTCCGGCAGACCT	0.527													29	160					0	0	0.001786	0	0
Unknown	0	broad.mit.edu	37	2	96593000	96593000	+	RNA	SNP	A	G	G	rs111976783		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:96593000A>G	uc002sva.1	-	9		c.405T>C			uc010yug.1_RNA|uc002svc.1_RNA					Homo sapiens cDNA FLJ41632 fis, clone FCBBF1000297, highly  similar to Human protein immuno-reactive with anti-PTH polyclonal antibodies mRNA.																		TTCTGTGGCTATATTTGAAAC	0.338													4	39					0	0	0.000248	0	0
LYG2	254773	broad.mit.edu	37	2	99860574	99860574	+	Silent	SNP	G	A	A	rs140282833		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:99860574G>A	uc002szw.1	-	5	521	c.408C>T	c.(406-408)GTC>GTT	p.V136V	MRPL30_uc002szl.1_Intron|LYG2_uc010fip.1_Silent_p.V136V|LYG2_uc002szx.1_Silent_p.V136V	NM_175735	NP_783862	Q86SG7	LYG2_HUMAN	lysozyme G-like 2 precursor	136					cell wall macromolecule catabolic process|peptidoglycan catabolic process	extracellular region	lysozyme activity			ovary(1)	1						CCCAGGCACCGACAGGGTGGT	0.428													10	36					0	0	0.006214	0	0
CREG2	200407	broad.mit.edu	37	2	102000038	102000038	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:102000038T>C	uc002tba.2	-	2	614	c.568A>G	c.(568-570)ATG>GTG	p.M190V		NM_153836	NP_722578	Q8IUH2	CREG2_HUMAN	cellular repressor of E1A-stimulated genes 2	190						extracellular region	FMN binding			ovary(1)	1						AGCGAGGCCATGGGGTTCTTC	0.547													10	41					0	0	0.000978	0	0
IL1R2	7850	broad.mit.edu	37	2	102626052	102626052	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:102626052G>A	uc002tbm.2	+	3	325	c.96G>A	c.(94-96)GGG>GGA	p.G32G	IL1R2_uc002tbn.2_Silent_p.G32G|IL1R2_uc002tbo.1_Silent_p.G32G	NM_004633	NP_004624	P27930	IL1R2_HUMAN	interleukin 1 receptor, type II precursor	32	Extracellular (Potential).|Ig-like C2-type 1.				immune response	integral to membrane|plasma membrane	interleukin-1, Type II, blocking receptor activity			ovary(1)|breast(1)	2					Anakinra(DB00026)	GGTTTCGTGGGAGGCATTACA	0.602													25	120					0	0	0.003954	0	0
IL1RL1	9173	broad.mit.edu	37	2	102968276	102968276	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:102968276C>T	uc002tbu.1	+	11	1837	c.1566C>T	c.(1564-1566)TCC>TCT	p.S522S	IL18R1_uc002tbw.3_Intron	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	522	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						ATAAAAGGTCCCTGAATTCTA	0.512													7	54					0	0	0.001984	0	0
IL18R1	8809	broad.mit.edu	37	2	103010931	103010931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:103010931G>A	uc002tbw.3	+	10	1264	c.1114G>A	c.(1114-1116)GGA>AGA	p.G372R	IL18R1_uc010ywc.1_Missense_Mutation_p.G371R|IL18R1_uc010ywd.1_Missense_Mutation_p.G216R|IL18R1_uc010fiy.2_Missense_Mutation_p.G372R	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	372	Cytoplasmic (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						CCTCCTAGATGGAAAAACATA	0.353													4	35					0	0	0.000248	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460392	107460392	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:107460392G>A	uc002tdq.2	-	2	161	c.42C>T	c.(40-42)TTC>TTT	p.F14F	ST6GAL2_uc002tdr.2_Silent_p.F14F|ST6GAL2_uc002tds.3_Silent_p.F14F	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	14	Helical; Signal-anchor for type II membrane protein; (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CGAATATTCCGAAAAGCATTC	0.512													12	53					0	0	0.001855	0	0
RGPD4	285190	broad.mit.edu	37	2	108487685	108487685	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:108487685G>A	uc010ywk.1	+	20	3307	c.3225G>A	c.(3223-3225)AGG>AGA	p.R1075R	RGPD4_uc002tdu.2_Silent_p.R262R|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1075	RanBD1 1.				intracellular transport		binding			skin(2)	2						CTGAGGTAAGGCAGTGGAAAG	0.383													66	370					0	0	0.003610	0	0
IL1F7	27178	broad.mit.edu	37	2	113674773	113674773	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:113674773C>T	uc002tij.2	+	3	255	c.213C>T	c.(211-213)GTC>GTT	p.V71V	IL1F7_uc002tik.2_Silent_p.V50V|IL1F7_uc002til.2_Intron|IL1F7_uc002tim.2_Intron|IL1F7_uc002tin.2_Silent_p.V45V	NM_014439	NP_055254	Q9NZH6	IL37_HUMAN	interleukin 1 family, member 7 isoform 1	71					immune response	cytosol|extracellular space|nucleus	cytokine activity|interleukin-1 receptor antagonist activity|interleukin-1 receptor binding				0						AAGTACTGGTCCTGGACTCTG	0.448													22	48					0	0	0.001882	0	0
IL1F8	27177	broad.mit.edu	37	2	113783714	113783714	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:113783714G>A	uc002tiq.1	-	5	461	c.357C>T	c.(355-357)TTC>TTT	p.F119F		NM_014438	NP_055253	Q9NZH7	IL36B_HUMAN	interleukin 1 family, member 8 isoform 1	119					immune response	extracellular space	cytokine activity|interleukin-1 receptor binding			ovary(1)	1						gggttcccatgaagcagctct	0													11	38					0	0	0.001368	0	0
WDR33	55339	broad.mit.edu	37	2	128477054	128477054	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:128477054G>A	uc002tpg.1	-	16	2728	c.2545C>T	c.(2545-2547)CCC>TCC	p.P849S		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	849					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		AATTCCTGGGGAGGTCCCAGC	0.647													10	52					0	0	0.008291	0	0
SAP130	79595	broad.mit.edu	37	2	128703068	128703068	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:128703068A>G	uc002tpp.2	-	18	2968	c.2836T>C	c.(2836-2838)TGG>CGG	p.W946R	SAP130_uc002tpn.2_Missense_Mutation_p.W706R|SAP130_uc002tpo.2_Missense_Mutation_p.W726R|SAP130_uc010fmd.2_Missense_Mutation_p.W981R	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	946	Interactions with SIN3A and HDAC1.				histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		TGGACTTTCCAGCCTTGAGCA	0.438													9	49					0	0	0.006214	0	0
GPR39	2863	broad.mit.edu	37	2	133402923	133402923	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:133402923A>G	uc002ttl.2	+	2	1575	c.1106A>G	c.(1105-1107)AAC>AGC	p.N369S	LYPD1_uc002ttm.3_3'UTR|LYPD1_uc002ttn.2_3'UTR|LYPD1_uc002tto.2_3'UTR	NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	369	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						CAGCACGCCAACCACGAGAAG	0.667													18	61					0	0	0.004990	0	0
NCKAP5	344148	broad.mit.edu	37	2	133538682	133538682	+	Silent	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:133538682T>C	uc002ttp.2	-	15	5366	c.4992A>G	c.(4990-4992)GGA>GGG	p.G1664G	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1664							protein binding				0						TCTTGTGGTTTCCTTGAGTAC	0.453													6	23					0	0	0.001984	0	0
MGAT5	4249	broad.mit.edu	37	2	135206361	135206361	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:135206361C>T	uc002ttv.1	+	16	2314	c.2169C>T	c.(2167-2169)GTC>GTT	p.V723V	LOC151162_uc002ttw.3_5'Flank	NM_002410	NP_002401	Q09328	MGT5A_HUMAN	N-acetylglucosaminyltransferase V	723	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0964)		ACCAGAGGGTCTGCCCCTGCC	0.597													5	57					0	0	0.000602	0	0
THSD7B	80731	broad.mit.edu	37	2	137872758	137872758	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:137872758C>T	uc002tva.1	+	4	1171	c.1171C>T	c.(1171-1173)CCC>TCC	p.P391S	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.P281S	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GCAGCAGGATCCCCACTGGCA	0.542													8	32					0	0	0.004482	0	0
LRP1B	53353	broad.mit.edu	37	2	142004865	142004865	+	Silent	SNP	T	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:142004865T>A	uc002tvj.1	-	5	1494	c.522A>T	c.(520-522)GGA>GGT	p.G174G	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	174	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AAGTGTAGGATCCATGTGTGT	0.388										TSP Lung(27;0.18)			16	62					0	0	0.004007	0	0
TNFAIP6	7130	broad.mit.edu	37	2	152222575	152222575	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:152222575C>T	uc002txk.2	+	3	314	c.238C>T	c.(238-240)CAT>TAT	p.H80Y		NM_007115	NP_009046	P98066	TSG6_HUMAN	tumor necrosis factor, alpha-induced protein 6	80	Link.				cell adhesion|cell-cell signaling|inflammatory response|signal transduction		hyaluronic acid binding				0				BRCA - Breast invasive adenocarcinoma(221;0.131)		TGCAGGATTTCATGTCTGTGC	0.423													21	97					0	0	0.002780	0	0
ACVR1C	130399	broad.mit.edu	37	2	158400965	158400965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:158400965C>T	uc002tzk.3	-	5	1178	c.935G>A	c.(934-936)GGT>GAT	p.G312D	ACVR1C_uc002tzl.3_Missense_Mutation_p.G232D|ACVR1C_uc010fof.2_Missense_Mutation_p.G155D|ACVR1C_uc010foe.2_Missense_Mutation_p.G262D	NM_145259	NP_660302	Q8NER5	ACV1C_HUMAN	activin A receptor, type IC isoform 1	312	Protein kinase.|Cytoplasmic (Potential).				apoptosis|cell differentiation|regulation of apoptosis	activin receptor complex	activin receptor activity, type I|ATP binding|transforming growth factor beta receptor activity			lung(3)|ovary(2)|skin(2)	7						ACCTTGTGTACCAACAATCTC	0.333													8	44					0	0	0.008291	0	0
FAP	2191	broad.mit.edu	37	2	163044741	163044741	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:163044741G>A	uc002ucd.2	-	20	1960	c.1752C>T	c.(1750-1752)CTC>CTT	p.L584L	FAP_uc010fpc.2_Silent_p.L133L|FAP_uc010zct.1_Silent_p.L559L|FAP_uc010fpd.2_Silent_p.L63L	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit	584	Extracellular (Potential).				endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						CTGCATAGAGGAGTTTGTCAC	0.438													17	72					0	0	0.004990	0	0
SCN1A	6323	broad.mit.edu	37	2	166905438	166905438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:166905438C>T	uc010zcz.1	-	7	1004	c.986G>A	c.(985-987)GGT>GAT	p.G329D	SCN1A_uc002udo.3_Missense_Mutation_p.G198D|SCN1A_uc010fpk.2_Missense_Mutation_p.G198D	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	329	I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	ATCTAAAAAACCCTCCAGGAA	0.274													8	32					0	0	0.004482	0	0
SCN9A	6335	broad.mit.edu	37	2	167056225	167056225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:167056225G>A	uc010fpl.2	-	27	5232	c.4891C>T	c.(4891-4893)CCT>TCT	p.P1631S	uc002udp.2_RNA	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1642	IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AACAACGCAGGAAGGGACATC	0.488													13	95					0	0	0.001855	0	0
XIRP2	129446	broad.mit.edu	37	2	168101368	168101368	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:168101368G>A	uc002udx.2	+	8	3484	c.3466G>A	c.(3466-3468)GAG>AAG	p.E1156K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E981K|XIRP2_uc010fpq.2_Missense_Mutation_p.E934K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	981					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AAAACAGGAGGAGATCCAAGG	0.398													11	43					0	0	0.000978	0	0
XIRP2	129446	broad.mit.edu	37	2	168104646	168104646	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:168104646G>A	uc002udx.2	+	8	6762	c.6744G>A	c.(6742-6744)TTG>TTA	p.L2248L	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.L2073L|XIRP2_uc010fpq.2_Silent_p.L2026L|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2073					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ATGTTCACTTGAAAAGCCAGG	0.368													5	27					0	0	0.001168	0	0
LASS6	253782	broad.mit.edu	37	2	169312971	169312971	+	Silent	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:169312971T>C	uc002ueb.1	+	1	137	c.13T>C	c.(13-15)TTA>CTA	p.L5L	LASS6_uc002uec.1_Silent_p.L5L	NM_203463	NP_982288	Q6ZMG9	CERS6_HUMAN	longevity assurance homolog 6	5	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			skin(1)	1						GGCAGGGATCTTAGCCTGGTT	0.667													10	48					0	0	0.000978	0	0
LRP2	4036	broad.mit.edu	37	2	170002290	170002290	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:170002290G>A	uc002ues.2	-	70	13168	c.12955C>T	c.(12955-12957)CGA>TGA	p.R4319*		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4319	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TGAAAGATTCGAACTTGAGTG	0.363													7	51					0	0	0.003080	0	0
LRP2	4036	broad.mit.edu	37	2	170055365	170055365	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:170055365G>A	uc002ues.2	-	45	8722	c.8509C>T	c.(8509-8511)CCT>TCT	p.P2837S		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2837	LDL-receptor class A 19.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TAAACGCGAGGAATACAAATA	0.358													8	17					0	0	0.004482	0	0
PDK1	5163	broad.mit.edu	37	2	173460628	173460628	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:173460628C>T	uc002uhr.2	+	11	1342	c.1242C>T	c.(1240-1242)AAC>AAT	p.N414N	PDK1_uc010zdz.1_Silent_p.N259N|PDK1_uc010zea.1_RNA|PDK1_uc002uhq.1_Silent_p.N434N|PDK1_uc002uhs.2_Silent_p.N414N|PDK1_uc010zeb.1_Silent_p.N434N	NM_002610	NP_002601	Q15118	PDK1_HUMAN	pyruvate dehydrogenase kinase 1 precursor	414					glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate|small GTPase mediated signal transduction	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			lung(3)|central_nervous_system(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.12)			ACAACACCAACCACGAGGCTG	0.468									Autosomal_Dominant_Polycystic_Kidney_Disease				12	29					0	0	0.001368	0	0
TTN	7273	broad.mit.edu	37	2	179435133	179435133	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:179435133C>T	uc010zfg.1	-	275	68246	c.68022G>A	c.(68020-68022)GTG>GTA	p.V22674V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.V16369V|TTN_uc010zfi.1_Silent_p.V16302V|TTN_uc010zfj.1_Silent_p.V16177V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23601							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCTCCTTTCCACAATATAAT	0.438													11	33					0	0	0.008291	0	0
TTN	7273	broad.mit.edu	37	2	179440423	179440423	+	Missense_Mutation	SNP	C	T	T	rs140127488	by1000genomes	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:179440423C>T	uc010zfg.1	-	275	62956	c.62732G>A	c.(62731-62733)CGG>CAG	p.R20911Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R14606Q|TTN_uc010zfi.1_Missense_Mutation_p.R14539Q|TTN_uc010zfj.1_Missense_Mutation_p.R14414Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21838							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATAAGATTTCCGTGTTGCTTC	0.453													20	73					0	0	0.007413	0	0
TTN	7273	broad.mit.edu	37	2	179442511	179442511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:179442511C>T	uc010zfg.1	-	272	61162	c.60938G>A	c.(60937-60939)CGA>CAA	p.R20313Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R14008Q|TTN_uc010zfi.1_Missense_Mutation_p.R13941Q|TTN_uc010zfj.1_Missense_Mutation_p.R13816Q|uc002umv.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21240							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGTAGATCTCGCTTCTCCAC	0.398													10	60					0	0	0.000978	0	0
TTN	7273	broad.mit.edu	37	2	179467033	179467033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:179467033C>T	uc010zfg.1	-	232	47616	c.47392G>A	c.(47392-47394)GAG>AAG	p.E15798K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E9493K|TTN_uc010zfi.1_Missense_Mutation_p.E9426K|TTN_uc010zfj.1_Missense_Mutation_p.E9301K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16725							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAGGGATCTCCCCAGTTGTA	0.373													11	55					0	0	0.000978	0	0
TTN	7273	broad.mit.edu	37	2	179490104	179490104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:179490104C>T	uc010zfg.1	-	190	36964	c.36740G>A	c.(36739-36741)GGA>GAA	p.G12247E	TTN_uc010zfh.1_Missense_Mutation_p.G5942E|TTN_uc010zfi.1_Missense_Mutation_p.G5875E|TTN_uc010zfj.1_Missense_Mutation_p.G5750E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13174							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGAACTTTTCCTTCTGAACG	0.353													26	133					0	0	0.007291	0	0
TTN	7273	broad.mit.edu	37	2	179497685	179497685	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:179497685C>T	uc010zfg.1	-	183	35693	c.35469G>A	c.(35467-35469)CAG>CAA	p.Q11823Q	TTN_uc010zfh.1_Silent_p.Q5518Q|TTN_uc010zfi.1_Silent_p.Q5451Q|TTN_uc010zfj.1_Silent_p.Q5326Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12750							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATTAGCAGCCTGGAAGGAAA	0.443													15	89					0	0	0.003163	0	0
TTN	7273	broad.mit.edu	37	2	179582511	179582511	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:179582511T>A	uc010zfg.1	-	84	21582	c.21358A>T	c.(21358-21360)AGA>TGA	p.R7120*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.R3781*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8047							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCAGTTTTCTTGCAAAGAAA	0.408													7	12					0	0	0.001984	0	0
TTN	7273	broad.mit.edu	37	2	179584176	179584176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:179584176G>A	uc010zfg.1	-	80	20433	c.20209C>T	c.(20209-20211)CGG>TGG	p.R6737W	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R3398W	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7664							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCACAATCCGATCTATGTGG	0.478													10	65					0	0	0.008291	0	0
TTN	7273	broad.mit.edu	37	2	179596537	179596537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:179596537C>T	uc010zfg.1	-	55	13557	c.13333G>A	c.(13333-13335)GAT>AAT	p.D4445N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D1106N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5372							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACCAGATGATCCTGAATGAAA	0.502													17	110					0	0	0.007413	0	0
TTN	7273	broad.mit.edu	37	2	179612023	179612023	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:179612023A>G	uc002unb.2	-	46	15328	c.15104T>C	c.(15103-15105)GTT>GCT	p.V5035A	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTTCAGCAACTTCCCCTAA	0.438													9	43					0	0	0.004482	0	0
TTN	7273	broad.mit.edu	37	2	179613013	179613013	+	Missense_Mutation	SNP	C	T	T	rs144127396		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:179613013C>T	uc002unb.2	-	46	14338	c.14114G>A	c.(14113-14115)CGA>CAA	p.R4705Q	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGTACATGTCGGACTTCTTT	0.338													8	48					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179614318	179614318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:179614318G>A	uc002unb.2	-	46	13033	c.12809C>T	c.(12808-12810)TCC>TTC	p.S4270F	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGATCTCTGGAATATTTTCC	0.383													6	51					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179614469	179614469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:179614469C>T	uc002unb.2	-	46	12882	c.12658G>A	c.(12658-12660)GAT>AAT	p.D4220N	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAATTAACATCCTTAATATAT	0.358													12	40					0	0	0.001368	0	0
CCDC141	285025	broad.mit.edu	37	2	179736992	179736992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:179736992C>T	uc002unf.1	-	3	279	c.222G>A	c.(220-222)ATG>ATA	p.M74I		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	74	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TGGTGTTCTTCATGAGGTACA	0.408													5	50					0	0	0.000602	0	0
ITGA4	3676	broad.mit.edu	37	2	182360653	182360653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:182360653C>T	uc002unu.2	+	14	2292	c.1529C>T	c.(1528-1530)CCA>CTA	p.P510L	ITGA4_uc010frj.1_5'Flank	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	510	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	AAGGAAGTTCCAGGTTACATT	0.428													16	60					0	0	0.004990	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801341	185801341	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:185801341G>A	uc002uph.2	+	4	1812	c.1218G>A	c.(1216-1218)GAG>GAA	p.E406E		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	406						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						ATACTGAAGAGGTTAACATAA	0.388													18	96					0	0	0.004990	0	0
COL3A1	1281	broad.mit.edu	37	2	189875011	189875011	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:189875011C>T	uc002uqj.1	+	49	4048	c.3931C>T	c.(3931-3933)CCA>TCA	p.P1311S		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1311	Fibrillar collagen NC1.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TTTGAATGTTCCACGGAAACA	0.433													12	55					0	0	0.000978	0	0
COL5A2	1290	broad.mit.edu	37	2	189933543	189933543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:189933543G>A	uc002uqk.2	-	19	1501	c.1226C>T	c.(1225-1227)CCC>CTC	p.P409L	COL5A2_uc010frx.2_Intron	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	409					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			TGGACCTGGGGGCCCAGTTTC	0.498													7	54					0	0	0.003080	0	0
ASNSD1	54529	broad.mit.edu	37	2	190535171	190535171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:190535171C>T	uc002uqt.2	+	6	2085	c.1651C>T	c.(1651-1653)CCT>TCT	p.P551S		NM_019048	NP_061921	Q9NWL6	ASND1_HUMAN	asparagine synthetase domain containing 1	551	Asparagine synthetase.				asparagine biosynthetic process|glutamine metabolic process		asparagine synthase (glutamine-hydrolyzing) activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.00318)|Epithelial(96;0.0449)|all cancers(119;0.118)			TTTTAGATTTCCTTTCCTGGA	0.299													7	44					0	0	0.004482	0	0
SDPR	8436	broad.mit.edu	37	2	192701396	192701396	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:192701396G>A	uc002utb.2	-	2	861	c.531C>T	c.(529-531)TCC>TCT	p.S177S		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	177						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	CCACGGCACCGGAAACGGGCT	0.488													9	33					0	0	0.004482	0	0
SLC39A10	57181	broad.mit.edu	37	2	196571356	196571356	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:196571356C>T	uc002utg.3	+	4	1447	c.1233C>T	c.(1231-1233)ATC>ATT	p.I411I	SLC39A10_uc002uth.3_Silent_p.I411I|SLC39A10_uc010zgp.1_5'UTR	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	411	Helical; (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			TTTGTGGTATCATTTCTATCA	0.333													8	60					0	0	0.004482	0	0
SATB2	23314	broad.mit.edu	37	2	200188671	200188671	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:200188671G>A	uc002uuy.1	-	9	2214	c.1397C>T	c.(1396-1398)TCG>TTG	p.S466L	SATB2_uc010fsq.1_Missense_Mutation_p.S348L|SATB2_uc002uuz.1_Missense_Mutation_p.S466L|SATB2_uc002uva.1_Missense_Mutation_p.S466L	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	466						cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						TGTCGGTGTCGAGGTTTTGGC	0.453													18	85					0	0	0.008871	0	0
ALS2	57679	broad.mit.edu	37	2	202619388	202619388	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:202619388G>A	uc002uyo.2	-	6	1834	c.1478C>T	c.(1477-1479)CCC>CTC	p.P493L	ALS2_uc002uyp.3_Missense_Mutation_p.P493L|ALS2_uc002uyq.2_Missense_Mutation_p.P493L	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	493					cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						TAAGAGCCTGGGGGAAACTGA	0.483													10	49					0	0	0.008291	0	0
PLEKHM3	389072	broad.mit.edu	37	2	208693150	208693150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:208693150G>A	uc002vcl.2	-	8	2669	c.2179C>T	c.(2179-2181)CGC>TGC	p.R727C		NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	727					intracellular signal transduction		metal ion binding			ovary(1)	1						AGCTCTCGGCGAACACACCTC	0.507													10	58					0	0	0.008291	0	0
MYL1	4632	broad.mit.edu	37	2	211179661	211179661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:211179661C>T	uc002vec.2	-	1	235	c.106G>A	c.(106-108)GAA>AAA	p.E36K		NM_079420	NP_524144	P05976	MYL1_HUMAN	fast skeletal myosin alkali light chain 1	36					muscle filament sliding|muscle organ development	cytosol|muscle myosin complex|sarcomere	calcium ion binding|structural constituent of muscle			ovary(1)	1				Epithelial(149;0.00573)|Lung(261;0.0422)|LUSC - Lung squamous cell carcinoma(261;0.0444)|all cancers(144;0.057)		TCAATTTTTTCTTCTTTGGGT	0.328													96	164					0	0	0.003610	0	0
ERBB4	2066	broad.mit.edu	37	2	212495282	212495282	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:212495282A>G	uc002veg.1	-	17	2082	c.1984T>C	c.(1984-1986)TTC>CTC	p.F662L	ERBB4_uc002veh.1_Missense_Mutation_p.F662L|ERBB4_uc010zji.1_Missense_Mutation_p.F652L|ERBB4_uc010zjj.1_Missense_Mutation_p.F652L|ERBB4_uc010fut.1_Missense_Mutation_p.F662L	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	662	Potential.				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		ACCAGAATGAAGAGCCCACCA	0.403										TSP Lung(8;0.080)			20	65					0	0	0.001882	0	0
ABCA12	26154	broad.mit.edu	37	2	215845306	215845306	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:215845306G>A	uc002vew.2	-	31	4861	c.4641C>T	c.(4639-4641)ATC>ATT	p.I1547I	ABCA12_uc002vev.2_Silent_p.I1229I|ABCA12_uc010zjn.1_Silent_p.I474I	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1547	ABC transporter 1.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CCAGGAAGGCGATGCGGTCAC	0.517													12	88					0	0	0.000978	0	0
FN1	2335	broad.mit.edu	37	2	216232655	216232655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:216232655C>T	uc002vfa.2	-	42	7215	c.6949G>A	c.(6949-6951)GAA>AAA	p.E2317K	FN1_uc002vfb.2_Missense_Mutation_p.E2105K|FN1_uc002vfc.2_Missense_Mutation_p.E2080K|FN1_uc002vfd.2_Missense_Mutation_p.E2261K|FN1_uc002vfe.2_Missense_Mutation_p.E2195K|FN1_uc002vff.2_Missense_Mutation_p.E2170K|FN1_uc002vfg.2_Missense_Mutation_p.E2136K|FN1_uc002vfh.2_Missense_Mutation_p.E2016K|FN1_uc002vfi.2_Missense_Mutation_p.E2286K|FN1_uc002vfj.2_Missense_Mutation_p.E2107K|FN1_uc002vez.2_Missense_Mutation_p.E480K|FN1_uc010zjp.1_Missense_Mutation_p.E854K|FN1_uc002vfk.1_Intron|FN1_uc010fva.1_RNA|FN1_uc010fvb.1_RNA	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	2226	Fibronectin type-I 10.|Fibrin-binding 2.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AAGCCTGATTCAGACATTCGT	0.463													9	44					0	0	0.004482	0	0
CXCR2	3579	broad.mit.edu	37	2	219000400	219000400	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:219000400C>T	uc002vgz.1	+	4	1101	c.876C>T	c.(874-876)ATC>ATT	p.I292I	CXCR2_uc002vha.1_Silent_p.I292I|CXCR2_uc002vhb.1_Silent_p.I292I	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	292	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						GCAATCACATCGACCGGGCTC	0.597													26	74					0	0	0.004656	0	0
CCDC108	255101	broad.mit.edu	37	2	219883791	219883791	+	Missense_Mutation	SNP	C	T	T	rs147747619		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:219883791C>T	uc002vjl.1	-	21	3668	c.3584G>A	c.(3583-3585)GGA>GAA	p.G1195E	CCDC108_uc002vjm.3_Missense_Mutation_p.G80E	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1195						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGACACCACTCCGCTGTTCTT	0.597													16	106					0	0	0.004007	0	0
STK11IP	114790	broad.mit.edu	37	2	220471783	220471783	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:220471783C>T	uc002vml.2	+	13	1219	c.1176C>T	c.(1174-1176)GTC>GTT	p.V392V	STK11IP_uc010zll.1_Silent_p.V349V|STK11IP_uc002vmm.1_Silent_p.V381V	NM_052902	NP_443134	Q8N1F8	S11IP_HUMAN	LKB1 interacting protein	392					protein localization	cytoplasm	protein kinase binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;2.69e-07)|all cancers(144;5.91e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGAGCCGAGTCCGTGTGAGGC	0.577													9	35					0	0	0.008291	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884687	228884687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:228884687C>T	uc002vpq.2	-	7	930	c.883G>A	c.(883-885)GCC>ACC	p.A295T	SPHKAP_uc002vpp.2_Missense_Mutation_p.A295T|SPHKAP_uc010zlx.1_Missense_Mutation_p.A295T	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	295						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTCTGCAAGGCTGTGTTCTTT	0.418													44	129					0	0	0.003214	0	0
SAG	6295	broad.mit.edu	37	2	234247353	234247353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:234247353G>A	uc002vuh.2	+	12	1364	c.976G>A	c.(976-978)GGA>AGA	p.G326R	SAG_uc010zmq.1_Missense_Mutation_p.G192R	NM_000541	NP_000532	P10523	ARRS_HUMAN	S-arrestin	326					rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway		protein phosphatase inhibitor activity			ovary(1)	1		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.018)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.054)		Epithelial(121;2.86e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00608)|Lung(119;0.00714)|GBM - Glioblastoma multiforme(43;0.207)		GACCGTCCTGGGAATCCTGGT	0.552													13	68					0	0	0.004007	0	0
USP40	55230	broad.mit.edu	37	2	234442325	234442325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:234442325C>T	uc010zmr.1	-	10	1304	c.1304G>A	c.(1303-1305)AGG>AAG	p.R435K	USP40_uc010zmt.1_Missense_Mutation_p.R79K	NM_018218	NP_060688	Q9NVE5	UBP40_HUMAN	ubiquitin thioesterase 40	423					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)|breast(1)	3		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0539)		Epithelial(121;1.71e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000407)|Lung(119;0.00277)|LUSC - Lung squamous cell carcinoma(224;0.00646)		CTGGTCATTCCTTTGGAAATC	0.398													8	49					0	0	0.003080	0	0
UGT1A3	54659	broad.mit.edu	37	2	234638206	234638206	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:234638206C>T	uc002vuy.2	+	1	434	c.434C>T	c.(433-435)TCC>TTC	p.S145F	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Missense_Mutation_p.S145F	NM_019093	NP_061966	P35503	UD13_HUMAN	UDP glycosyltransferase 1 family, polypeptide A3	145					flavonoid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;2.4e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000476)|Lung(119;0.00243)|LUSC - Lung squamous cell carcinoma(224;0.00599)		AATGCTACTTCCTTTGATGTG	0.443													23	143					0	0	0.002299	0	0
COL6A3	1293	broad.mit.edu	37	2	238244917	238244917	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:238244917C>T	uc002vwl.2	-	40	9111	c.8826G>A	c.(8824-8826)GCG>GCA	p.A2942A	COL6A3_uc002vwo.2_Silent_p.A2736A|COL6A3_uc010znj.1_Silent_p.A2335A|COL6A3_uc002vwj.2_Silent_p.A323A	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2942	Nonhelical region.|Ala-rich.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CTACAGGCTTCGCTGCCGTTG	0.632													20	80					0	0	0.002299	0	0
PER2	8864	broad.mit.edu	37	2	239162200	239162200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:239162200G>A	uc002vyc.2	-	19	2701	c.2464C>T	c.(2464-2466)CCG>TCG	p.P822S	PER2_uc010znv.1_Missense_Mutation_p.P822S	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	822					circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		CCCACCAGCGGGGGCCGGGCG	0.612													3	15					0	0	0.000248	0	0
ANO7	50636	broad.mit.edu	37	2	242139598	242139598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr2:242139598C>T	uc002wax.2	+	6	777	c.674C>T	c.(673-675)CCC>CTC	p.P225L		NM_001001891	NP_001001891	Q6IWH7	ANO7_HUMAN	transmembrane protein 16G isoform NGEP long	225	Cytoplasmic (Potential).					cell junction|chloride channel complex|cytosol	chloride channel activity			pancreas(2)|central_nervous_system(1)	3						GACGTACCCCCCGAGTACTAC	0.622													10	23					0	0	0.000978	0	0
NRSN2	80023	broad.mit.edu	37	20	333860	333860	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:333860C>T	uc002wdi.3	+	4	734	c.196C>T	c.(196-198)CTG>TTG	p.L66L	NRSN2_uc002wdj.2_RNA|NRSN2_uc002wdl.2_Intron	NM_024958	NP_079234	Q9GZP1	NRSN2_HUMAN	neurensin 2	66	Helical; (Potential).					integral to membrane|plasma membrane|transport vesicle					0		all_cancers(10;0.0834)				CTAGATCAGCCTGTCCTCGGG	0.617													22	100					0	0	0.002780	0	0
GNRH2	2797	broad.mit.edu	37	20	3026366	3026366	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:3026366C>T	uc002whr.1	+	4	398	c.347C>T	c.(346-348)TCC>TTC	p.S116F	GNRH2_uc002whp.1_Missense_Mutation_p.S109F|GNRH2_uc002whq.1_Missense_Mutation_p.S108F|GNRH2_uc010gau.1_Missense_Mutation_p.S116F|MRPS26_uc002whs.2_5'Flank	NM_001501	NP_001492	O43555	GON2_HUMAN	gonadotropin-releasing hormone 2 isoform a	116					multicellular organismal development|signal transduction	extracellular region|soluble fraction	hormone activity				0						GCCCCGCCATCCTCCAATAAA	0.647													12	58					0	0	0.006122	0	0
ADAM33	80332	broad.mit.edu	37	20	3651787	3651787	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:3651787G>A	uc002wit.2	-	19	2193	c.2106C>T	c.(2104-2106)TTC>TTT	p.F702F	ADAM33_uc002wiq.1_5'Flank|ADAM33_uc002wir.1_Silent_p.F702F|ADAM33_uc002wis.2_Silent_p.F198F|ADAM33_uc002wiu.2_Silent_p.F676F|uc002wiv.1_5'Flank|ADAM33_uc002wiw.1_RNA	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	702	Helical; (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						TGGCCAGCAGGAAGGTGTCAT	0.662													4	17					0	0	0.000248	0	0
CDC25B	994	broad.mit.edu	37	20	3779074	3779074	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:3779074C>T	uc002wjn.2	+	3	1122	c.344C>T	c.(343-345)TCC>TTC	p.S115F	CDC25B_uc010zqk.1_Missense_Mutation_p.S51F|CDC25B_uc010zql.1_Missense_Mutation_p.S37F|CDC25B_uc010zqm.1_Missense_Mutation_p.S51F|CDC25B_uc002wjl.2_Missense_Mutation_p.S3F|CDC25B_uc002wjm.2_Missense_Mutation_p.S3F|CDC25B_uc002wjo.2_Missense_Mutation_p.S101F|CDC25B_uc002wjp.2_Missense_Mutation_p.S115F|CDC25B_uc002wjq.2_5'Flank	NM_021873	NP_068659	P30305	MPIP2_HUMAN	cell division cycle 25B isoform 1	115					cell division|G2/M transition of mitotic cell cycle|mitosis|positive regulation of cell proliferation	cytosol|microtubule organizing center|nucleoplasm	protein binding|protein tyrosine phosphatase activity			lung(3)|ovary(2)	5						TGCATGGATTCCCCCAGCCCT	0.478													25	122					0	0	0.007291	0	0
CHGB	1114	broad.mit.edu	37	20	5903702	5903702	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:5903702G>A	uc002wmg.2	+	4	1218	c.912G>A	c.(910-912)AAG>AAA	p.K304K	CHGB_uc010zqz.1_5'UTR	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	304						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						CTGAGGAAAAGGGACACCCCC	0.587													8	12					0	0	0.003080	0	0
PAK7	57144	broad.mit.edu	37	20	9520198	9520198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:9520198C>T	uc002wnl.2	-	11	2616	c.2071G>A	c.(2071-2073)GCC>ACC	p.A691T	PAK7_uc002wnk.2_Missense_Mutation_p.A691T|PAK7_uc002wnj.2_Missense_Mutation_p.A691T|PAK7_uc010gby.1_Missense_Mutation_p.A604T	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	691	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			AGTTCCTGGGCTGTTGCTCTC	0.507													29	156					0	0	0.006320	0	0
PAK7	57144	broad.mit.edu	37	20	9561352	9561352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:9561352C>T	uc002wnl.2	-	5	975	c.430G>A	c.(430-432)GAA>AAA	p.E144K	PAK7_uc002wnk.2_Missense_Mutation_p.E144K|PAK7_uc002wnj.2_Missense_Mutation_p.E144K|PAK7_uc010gby.1_Missense_Mutation_p.E144K	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	144	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CTGTACTTTTCGGTCGTGTAG	0.512													47	187					0	0	0.003214	0	0
SNAP25	6616	broad.mit.edu	37	20	10273890	10273890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:10273890G>A	uc002wnq.1	+	5	457	c.245G>A	c.(244-246)GGA>GAA	p.G82E	SNAP25_uc002wnr.1_Intron|SNAP25_uc002wns.1_Missense_Mutation_p.G19E|SNAP25_uc010gca.1_Intron|SNAP25_uc010gcb.1_Missense_Mutation_p.G19E|SNAP25_uc010gcc.1_Intron	NM_130811	NP_570824	P60880	SNP25_HUMAN	synaptosomal-associated protein 25 isoform	82					energy reserve metabolic process|glutamate secretion|neurotransmitter uptake|synaptic vesicle docking involved in exocytosis	cell junction|growth cone|perinuclear region of cytoplasm|synapse|synaptosome				skin(2)	2					Botulinum Toxin Type A(DB00083)	ACGGACCTAGGAAAATTCTGC	0.458													12	47					0	0	0.001368	0	0
SEC23B	10483	broad.mit.edu	37	20	18541303	18541303	+	Silent	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:18541303A>G	uc002wqz.1	+	20	2666	c.2223A>G	c.(2221-2223)GGA>GGG	p.G741G	SEC23B_uc002wra.1_Silent_p.G741G|SEC23B_uc002wrb.1_Silent_p.G741G|SEC23B_uc010zsb.1_Silent_p.G723G|SEC23B_uc002wrc.1_Silent_p.G741G	NM_006363	NP_006354	Q15437	SC23B_HUMAN	Sec23 homolog B	741					ER to Golgi vesicle-mediated transport|intracellular protein transport	COPII vesicle coat|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane	zinc ion binding			ovary(1)	1						AGGAAACTGGAGCACCCATCC	0.438													25	99					0	0	0.007291	0	0
CST7	8530	broad.mit.edu	37	20	24930087	24930087	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:24930087G>A	uc002wtx.1	+	1	222	c.12G>A	c.(10-12)GAG>GAA	p.E4E		NM_003650	NP_003641	O76096	CYTF_HUMAN	cystatin F	Error:Variant_position_missing_in_O76096_after_alignment					immune response	cytoplasm|extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1						TGCTGCCTGAGAAGGCACTGC	0.672													13	46					0	0	0.003163	0	0
TPX2	22974	broad.mit.edu	37	20	30371683	30371683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:30371683C>T	uc002wwp.1	+	12	2070	c.1372C>T	c.(1372-1374)CAT>TAT	p.H458Y	TPX2_uc010gdv.1_Missense_Mutation_p.H494Y	NM_012112	NP_036244	Q9ULW0	TPX2_HUMAN	TPX2, microtubule-associated protein homolog	458					activation of protein kinase activity|apoptosis|cell division|cell proliferation|mitosis|regulation of mitotic spindle organization	cytoplasm|microtubule|nucleus|spindle pole	ATP binding|GTP binding|protein kinase binding			large_intestine(1)|ovary(1)	2			Epithelial(4;0.000771)|Colorectal(19;0.00306)|all cancers(5;0.004)|COAD - Colon adenocarcinoma(19;0.0347)|OV - Ovarian serous cystadenocarcinoma(3;0.0656)			CTTTGAATTTCATTCCAGACC	0.413													7	53					0	0	0.004482	0	0
FAM83C	128876	broad.mit.edu	37	20	33875020	33875020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:33875020C>T	uc010zux.1	-	4	1680	c.1562G>A	c.(1561-1563)GGA>GAA	p.G521E	EIF6_uc002xbv.1_5'Flank|EIF6_uc002xbx.1_5'Flank|EIF6_uc002xbz.1_5'Flank|EIF6_uc002xby.1_5'Flank|FAM83C_uc002xcb.1_Missense_Mutation_p.G176E	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	521										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			GTCAGGGTCTCCCACTTCTCG	0.642													18	60					0	0	0.008871	0	0
PTPRT	11122	broad.mit.edu	37	20	40747136	40747136	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:40747136C>T	uc002xkg.2	-	21	3073	c.2889G>A	c.(2887-2889)CCG>CCA	p.P963P	PTPRT_uc010ggj.2_Silent_p.P982P|PTPRT_uc010ggi.2_Silent_p.P166P	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	963	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TCTCCTGCATCGGACCTGCCA	0.537													23	44					0	0	0.003330	0	0
ADA	100	broad.mit.edu	37	20	43251572	43251572	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:43251572C>T	uc002xmj.2	-	8	807	c.679_splice	c.e8-1	p.A227_splice	ADA_uc010ggt.2_Splice_Site	NM_000022	NP_000013	P00813	ADA_HUMAN	adenosine deaminase						adenosine catabolic process|cell adhesion|hypoxanthine salvage|inosine biosynthetic process|negative regulation of adenosine receptor signaling pathway|purine nucleotide salvage|purine ribonucleoside monophosphate biosynthetic process|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation	cell junction|cytoplasmic membrane-bounded vesicle lumen|cytosol|external side of plasma membrane|lysosome	adenosine deaminase activity|protein binding|zinc ion binding			pancreas(2)|ovary(1)	3		all_lung(126;1.24e-07)|Lung NSC(126;1.94e-07)|Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)		Adenosine(DB00640)|Cladribine(DB00242)|Dipyridamole(DB00975)|Erythromycin(DB00199)|Fludarabine(DB01073)|Idoxuridine(DB00249)|Nelarabine(DB01280)|Pentostatin(DB00552)|Theophylline(DB00277)|Vidarabine(DB00194)	TGTCCACAGCCTGTAGAGAAG	0.582									Adenosine_Deaminase_Deficiency				30	100					0	0	0.007291	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870404	51870404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:51870404C>T	uc002xwo.2	+	2	1363	c.407C>T	c.(406-408)TCC>TTC	p.S136F		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	136					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CTGTCGGATTCCTACTGGTCA	0.512													7	65					0	0	0.004482	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870470	51870470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:51870470G>A	uc002xwo.2	+	2	1429	c.473G>A	c.(472-474)CGA>CAA	p.R158Q		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	158					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			TGTGACACCCGAAACGGCAGC	0.547													12	86					0	0	0.000978	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872802	51872802	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:51872802C>T	uc002xwo.2	+	2	3761	c.2805C>T	c.(2803-2805)TTC>TTT	p.F935F		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	935	C2H2-type 4.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CCTCCCAGTTCAGAACCCCTT	0.488													13	65					0	0	0.001855	0	0
ZNF831	128611	broad.mit.edu	37	20	57766789	57766789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:57766789G>A	uc002yan.2	+	1	715	c.715G>A	c.(715-717)GAA>AAA	p.E239K		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	239						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GGGGATGCACGAAGGCGCCTC	0.701													14	60					0	0	0.004007	0	0
ZNF831	128611	broad.mit.edu	37	20	57828097	57828097	+	Silent	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:57828097A>G	uc002yan.2	+	4	4092	c.4092A>G	c.(4090-4092)GAA>GAG	p.E1364E		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1364						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GTGGGAAGGAAGAGAAGAAGG	0.478													4	73					0	0	0.000248	0	0
ZNF831	128611	broad.mit.edu	37	20	57828989	57828989	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:57828989A>G	uc002yan.2	+	5	4225	c.4225A>G	c.(4225-4227)ACT>GCT	p.T1409A		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1409						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					TGGTGACTGTACTACTCACAG	0.473													16	105					0	0	0.006122	0	0
MYT1	4661	broad.mit.edu	37	20	62848451	62848451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr20:62848451C>T	uc002yii.2	+	11	2027	c.1663C>T	c.(1663-1665)CCT>TCT	p.P555S	MYT1_uc002yih.2_Missense_Mutation_p.P257S|MYT1_uc002yij.2_Missense_Mutation_p.P187S	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	555					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					GCTCGAGGTCCCTCCATATGG	0.632													15	93					0	0	0.004007	0	0
TPTE	7179	broad.mit.edu	37	21	10920116	10920116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr21:10920116C>T	uc002yip.1	-	19	1506	c.1138G>A	c.(1138-1140)GAA>AAA	p.E380K	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.E362K|TPTE_uc002yir.1_Missense_Mutation_p.E342K|TPTE_uc010gkv.1_Missense_Mutation_p.E242K	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	380	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGAAATTTTTCGCTGTGGGTT	0.393													8	63					0	0	0.004482	0	0
RBM11	54033	broad.mit.edu	37	21	15588566	15588566	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr21:15588566G>A	uc002yjo.3	+	1	101	c.59G>A	c.(58-60)CGA>CAA	p.R20Q	RBM11_uc002yjn.3_5'UTR|RBM11_uc002yjp.3_5'UTR	NM_144770	NP_658983	P57052	RBM11_HUMAN	RNA binding motif protein 11	20	RRM.						nucleotide binding|RNA binding				0				Epithelial(23;0.000314)|COAD - Colon adenocarcinoma(22;0.00242)|Colorectal(24;0.0129)|Lung(58;0.141)		TTAGAGGCCCGAGTTCGGGAA	0.612													6	19					0	0	0.003080	0	0
CYYR1	116159	broad.mit.edu	37	21	27852747	27852747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr21:27852747C>T	uc002ymd.2	-	3	500	c.178G>A	c.(178-180)GGC>AGC	p.G60S	CYYR1_uc011ack.1_RNA|CYYR1_uc002yme.2_Missense_Mutation_p.G60S	NM_052954	NP_443186	Q96J86	CYYR1_HUMAN	cysteine and tyrosine-rich 1 protein precursor	60	Extracellular (Potential).					integral to membrane					0						ATTGCAGTGCCCCTAAAAGGA	0.398													13	37					0	0	0.001855	0	0
RNF160	26046	broad.mit.edu	37	21	30357190	30357190	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr21:30357190G>A	uc002ymr.2	-	4	550	c.537C>T	c.(535-537)ATC>ATT	p.I179I	RNF160_uc010gll.1_RNA	NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	133				I -> T (in Ref. 5; BAA91976).			ligase activity|zinc ion binding				0						TTACTTTAAGGATAAGTTTTT	0.373													9	32					0	0	0.006214	0	0
KRTAP27-1	643812	broad.mit.edu	37	21	31709534	31709534	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr21:31709534G>A	uc002ynx.1	-	1	479	c.453C>T	c.(451-453)TTC>TTT	p.F151F		NM_001077711	NP_001071179	Q3LI81	KR271_HUMAN	keratin associated protein 27-1	151						intermediate filament		p.F151S(1)		ovary(2)	2						CCAGAGTTTCGAAATTTTTAG	0.493													38	151					0	0	0.006999	0	0
GART	2618	broad.mit.edu	37	21	34903147	34903147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr21:34903147G>A	uc002yrx.2	-	7	776	c.641C>T	c.(640-642)CCA>CTA	p.P214L	GART_uc002yrz.2_Missense_Mutation_p.P214L|GART_uc010gmd.2_5'UTR|GART_uc002yry.2_Missense_Mutation_p.P214L|GART_uc002ysa.2_Missense_Mutation_p.P214L	NM_000819	NP_000810	P22102	PUR2_HUMAN	phosphoribosylglycinamide formyltransferase,	214	ATP-grasp.				'de novo' IMP biosynthetic process|purine base biosynthetic process	cytosol	ATP binding|metal ion binding|methyltransferase activity|phosphoribosylamine-glycine ligase activity|phosphoribosylformylglycinamidine cyclo-ligase activity|phosphoribosylglycinamide formyltransferase activity|protein binding			ovary(1)	1					Pemetrexed(DB00642)	GTCCTGTGCTGGGGGCATGGG	0.463													6	36					0	0	0.003080	0	0
SON	6651	broad.mit.edu	37	21	34923547	34923547	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr21:34923547G>A	uc002yse.1	+	3	2059	c.2010G>A	c.(2008-2010)TCG>TCA	p.S670S	SON_uc002ysb.1_Silent_p.S670S|SON_uc002ysc.2_Silent_p.S670S|SON_uc002ysd.2_5'UTR|SON_uc002ysf.1_Intron|SON_uc002ysg.2_5'Flank	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	670					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						TGACCGTGTCGCAGTCCCTGG	0.572													13	48					0	0	0.001368	0	0
DOPEY2	9980	broad.mit.edu	37	21	37602939	37602940	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr21:37602939_37602940GG>AA	uc002yvg.2	+	14	1936_1937	c.1857_1858GG>AA	c.(1855-1860)AAGGGC>AAAAGC	p.G620S	DOPEY2_uc011aeb.1_Missense_Mutation_p.G620S	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	620					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						TTTGGAAGAAGGGCGGGAGCAT	0.54													12	98					0	0	0.004672	0	0
DOPEY2	9980	broad.mit.edu	37	21	37636076	37636076	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr21:37636076C>T	uc002yvg.2	+	26	5530	c.5451C>T	c.(5449-5451)CCC>CCT	p.P1817P	DOPEY2_uc011aeb.1_Silent_p.P1766P	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	1817					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						CAAGAACTCCCAACCTGGAAA	0.408													27	129					0	0	0.002096	0	0
KCNJ6	3763	broad.mit.edu	37	21	39086776	39086776	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr21:39086776C>T	uc011aej.1	-	3	737	c.684G>A	c.(682-684)AGG>AGA	p.R228R	KCNJ6_uc002ywo.2_Silent_p.R228R	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	228	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	TGTGGGAATTCCTAAGGTCCC	0.532													12	50					0	0	0.001855	0	0
TRPM2	7226	broad.mit.edu	37	21	45817680	45817680	+	Silent	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr21:45817680A>G	uc002zet.1	+	14	2196	c.1983A>G	c.(1981-1983)GAA>GAG	p.E661E	TRPM2_uc002zeu.1_Silent_p.E661E|TRPM2_uc002zew.1_Silent_p.E661E|TRPM2_uc010gpt.1_Silent_p.E661E|TRPM2_uc002zex.1_Silent_p.E447E|TRPM2_uc002zey.1_Silent_p.E174E	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	661	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TCCTGAAGGAACTGTCCAAGG	0.637													5	31					0	0	0.000602	0	0
MCM3AP	8888	broad.mit.edu	37	21	47666294	47666294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr21:47666294G>A	uc002zir.1	-	22	4610	c.4574C>T	c.(4573-4575)TCA>TTA	p.S1525L	MCM3APAS_uc002zim.2_Intron|MCM3APAS_uc002zin.2_Intron|MCM3AP_uc002zio.1_Missense_Mutation_p.S20L|MCM3AP_uc002zip.1_Missense_Mutation_p.S266L|MCM3AP_uc002ziq.1_Missense_Mutation_p.S452L|MCM3APAS_uc002zis.1_Intron	NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	1525					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					CAGCTTAGCTGAAACCAAGTC	0.408													7	28					0	0	0.008291	0	0
CCT8L2	150160	broad.mit.edu	37	22	17073081	17073081	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:17073081C>T	uc002zlp.1	-	1	620	c.360G>A	c.(358-360)GAG>GAA	p.E120E		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	120					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				TCAGCAGCTGCTCTGCCTGTT	0.652													14	36					0	0	0.001855	0	0
CCDC116	164592	broad.mit.edu	37	22	21988630	21988630	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:21988630G>C	uc002zve.2	+	3	485	c.392G>C	c.(391-393)AGC>ACC	p.S131T	CCDC116_uc011aih.1_Missense_Mutation_p.S131T	NM_152612	NP_689825	Q8IYX3	CC116_HUMAN	coiled-coil domain containing 116	131										ovary(1)|skin(1)	2	Colorectal(54;0.105)					CCCAGCCTCAGCACCGTACAC	0.657													14	84					0	0	0.006122	0	0
ADORA2A	135	broad.mit.edu	37	22	24837103	24837103	+	Silent	SNP	C	T	T	rs17650937	byFrequency	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:24837103C>T	uc002zzx.2	+	5	1648	c.885C>T	c.(883-885)TTC>TTT	p.F295F	ADORA2A_uc002zzy.3_Silent_p.F295F|ADORA2A_uc011ajs.1_Silent_p.F156F|ADORA2A_uc010gup.2_Silent_p.F295F|ADORA2A_uc010guq.2_Silent_p.F295F|ADORA2A_uc003aab.2_Silent_p.F295F|ADORA2A_uc003aac.2_Silent_p.F156F|C22orf45_uc003aad.1_Intron	NM_000675	NP_000666	P29274	AA2AR_HUMAN	adenosine A2a receptor	295	Cytoplasmic.				apoptosis|blood coagulation|cAMP biosynthetic process|cellular defense response|inflammatory response|nerve growth factor receptor signaling pathway|phagocytosis|sensory perception	integral to plasma membrane|membrane fraction	enzyme binding				0	Colorectal(2;0.196)				Caffeine(DB00201)|Defibrotide(DB04932)|Pegademase bovine(DB00061)|Theophylline(DB00277)	TCCGCGAGTTCCGCCAGACCT	0.597													9	46					0	0	0.006214	0	0
UPB1	51733	broad.mit.edu	37	22	24919732	24919732	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:24919732G>A	uc003aaf.2	+	9	1183	c.1062G>A	c.(1060-1062)TGG>TGA	p.W354*	UPB1_uc003aae.2_Nonsense_Mutation_p.W286*|UPB1_uc011ajt.1_Nonsense_Mutation_p.W354*	NM_016327	NP_057411	Q9UBR1	BUP1_HUMAN	beta-ureidopropionase	354	CN hydrolase.				pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol	beta-ureidopropionase activity|metal ion binding			ovary(2)	2	Colorectal(2;0.0339)					ATGATGTCTGGAACTTCAAGG	0.597													20	108					0	0	0.002780	0	0
SEZ6L	23544	broad.mit.edu	37	22	26709827	26709827	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:26709827C>T	uc003acb.2	+	9	2130	c.1974C>T	c.(1972-1974)ATC>ATT	p.I658I	SEZ6L_uc003acc.2_Silent_p.I658I|SEZ6L_uc011akc.1_Silent_p.I658I|SEZ6L_uc003acd.2_Silent_p.I658I|SEZ6L_uc011akd.1_Silent_p.I658I|SEZ6L_uc003ace.2_Silent_p.I658I|SEZ6L_uc003acf.1_Silent_p.I431I|SEZ6L_uc010gvc.1_Silent_p.I431I	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	658	CUB 3.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						TCTGGAAGATCCACGTGGGAG	0.493													19	90					0	0	0.006122	0	0
C22orf31	25770	broad.mit.edu	37	22	29456719	29456719	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:29456719T>C	uc003aej.1	-	2	243	c.116A>G	c.(115-117)AAC>AGC	p.N39S		NM_015370	NP_056185	O95567	CV031_HUMAN	hypothetical protein LOC25770	39											0						CATCCAGATGTTGGTGAGAGC	0.498													23	124					0	0	0.002445	0	0
PLA2G3	50487	broad.mit.edu	37	22	31536283	31536284	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:31536283_31536284CC>TT	uc003aka.2	-	1	186_187	c.57_58GG>AA	c.(55-60)GGGGGC>GGAAGC	p.G20S		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	20					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						GCAGGGGAGCCCCCCAGGGCCA	0.653													10	61					0	0	0.004672	0	0
SLC5A1	6523	broad.mit.edu	37	22	32479098	32479098	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:32479098G>A	uc003amc.2	+	7	853	c.621G>A	c.(619-621)CAG>CAA	p.Q207Q	SLC5A1_uc011alz.1_Silent_p.Q80Q	NM_000343	NP_000334	P13866	SC5A1_HUMAN	solute carrier family 5 (sodium/glucose	207	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to plasma membrane	glucose:sodium symporter activity|protein binding			skin(1)	1						ACACCTTGCAGACGGTGATCA	0.582													10	38					0	0	0.001368	0	0
BPIL2	254240	broad.mit.edu	37	22	32853335	32853335	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:32853335G>A	uc003amn.2	-	1	39	c.39C>T	c.(37-39)TTC>TTT	p.F13F	BPIL2_uc010gwo.2_5'UTR|BPIL2_uc011amb.1_5'UTR|BPIL2_uc003amo.3_Silent_p.F13F	NM_174932	NP_777592	Q8NFQ6	BPIL2_HUMAN	bactericidal/permeability-increasing	13						extracellular region	lipopolysaccharide binding|phospholipid binding			ovary(1)|skin(1)	2						TCCACAGGAGGAAACATCCCC	0.408											OREG0003513	type=REGULATORY REGION|Gene=BPIL2|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	13	46					0	0	0.002450	0	0
ISX	91464	broad.mit.edu	37	22	35478635	35478635	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:35478635G>A	uc003anj.2	+	2	1305	c.354G>A	c.(352-354)AGG>AGA	p.R118R	ISX_uc011amg.1_Silent_p.R106R	NM_001008494	NP_001008494	Q2M1V0	ISX_HUMAN	intestine-specific homeobox	118	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)	5						TGGCAGCCAGGATCAACCTCC	0.572													10	30					0	0	0.000978	0	0
MYH9	4627	broad.mit.edu	37	22	36715637	36715637	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:36715637G>A	uc003apg.2	-	10	1287	c.1056C>T	c.(1054-1056)ATC>ATT	p.I352I	MYH9_uc003aph.1_Silent_p.I216I	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	352	Myosin head-like.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						TCTTGAAGACGATGTTGCCGA	0.592			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				8	32					0	0	0.003080	0	0
LGALS2	3957	broad.mit.edu	37	22	37966596	37966596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:37966596C>T	uc003ata.2	-	3	348	c.236G>A	c.(235-237)GGG>GAG	p.G79E		NM_006498	NP_006489	P05162	LEG2_HUMAN	lectin, galactoside-binding, soluble, 2	79	Galectin.									breast(1)|skin(1)	2	Melanoma(58;0.0574)					GACCTCTGACCCTGGGCTGAA	0.587													36	126					0	0	0.006999	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121646	38121646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:38121646C>T	uc003atr.2	+	7	3354	c.3083C>T	c.(3082-3084)TCG>TTG	p.S1028L	TRIOBP_uc003atu.2_Missense_Mutation_p.S856L|TRIOBP_uc003atq.1_Missense_Mutation_p.S1028L|TRIOBP_uc003ats.1_Missense_Mutation_p.S856L	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1028					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CGAGCCTCTTCGCCCCCTCGC	0.657													18	90					0	0	0.007413	0	0
CACNA1I	8911	broad.mit.edu	37	22	39966983	39966983	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:39966983G>A	uc003ayc.2	+	1	226	c.226G>A	c.(226-228)GTG>ATG	p.V76M	CACNA1I_uc003ayd.2_Missense_Mutation_p.V76M	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	76	Cytoplasmic (Potential).|I.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CATCAAGATGGTGTGCAACCC	0.632													20	74					0	0	0.001882	0	0
CACNA1I	8911	broad.mit.edu	37	22	40037035	40037035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:40037035G>A	uc003ayc.2	+	6	904	c.904G>A	c.(904-906)GAC>AAC	p.D302N	CACNA1I_uc003ayd.2_Missense_Mutation_p.D302N|CACNA1I_uc003aye.2_Missense_Mutation_p.D217N|CACNA1I_uc003ayf.2_Missense_Mutation_p.D217N	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	302	I.|Extracellular (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CGACGTCTACGACTTTGGGGC	0.632													22	68					0	0	0.003954	0	0
ENTHD1	150350	broad.mit.edu	37	22	40139867	40139867	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:40139867G>A	uc003ayg.2	-	7	1892	c.1641C>T	c.(1639-1641)TCC>TCT	p.S547S		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	547	Potential.									ovary(2)|skin(1)	3	Melanoma(58;0.0749)					GAACACTAATGGAATTCTTTG	0.423													7	25					0	0	0.001984	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45218339	45218339	+	Missense_Mutation	SNP	G	A	A	rs55849456	byFrequency	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:45218339G>A	uc003bfd.2	+	11	1377	c.1105G>A	c.(1105-1107)GAA>AAA	p.E369K	PRR5-ARHGAP8_uc003bfc.2_Missense_Mutation_p.E290K|PRR5-ARHGAP8_uc011aqi.1_Missense_Mutation_p.E281K|PRR5-ARHGAP8_uc011aqj.1_Missense_Mutation_p.E195K|ARHGAP8_uc003bfi.2_Missense_Mutation_p.E159K|ARHGAP8_uc010gzv.2_Missense_Mutation_p.E159K|ARHGAP8_uc003bfj.2_Missense_Mutation_p.E190K|ARHGAP8_uc003bfk.2_Missense_Mutation_p.E159K|ARHGAP8_uc003bfl.2_RNA	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						CATCCCTCCCGAAGTTTTGCG	0.468													13	59					0	0	0.001368	0	0
RIBC2	26150	broad.mit.edu	37	22	45813720	45813720	+	Silent	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:45813720T>C	uc011aqs.1	+	4	644	c.435T>C	c.(433-435)GAT>GAC	p.D145D		NM_015653	NP_056468	Q9H4K1	RIBC2_HUMAN	RIB43A domain with coiled-coils 2	77											0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		TGGGAGAGGATTTAAACTTCC	0.448													5	30					0	0	0.001168	0	0
CRELD2	79174	broad.mit.edu	37	22	50320941	50320941	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:50320941C>A	uc003bja.2	+	10	1183	c.1048C>A	c.(1048-1050)CGC>AGC	p.R350S	CRELD2_uc010hal.2_Missense_Mutation_p.R399S|CRELD2_uc010hak.2_Missense_Mutation_p.R322S|CRELD2_uc010ham.2_Missense_Mutation_p.R318S	NM_024324	NP_077300	Q6UXH1	CREL2_HUMAN	cysteine-rich with EGF-like domains 2 isoform b	350						endoplasmic reticulum|extracellular region	calcium ion binding				0		all_cancers(38;5.53e-07)|all_epithelial(38;3.84e-06)|all_lung(38;0.00208)|Breast(42;0.0104)|Lung NSC(38;0.0199)|Ovarian(80;0.0907)|Lung SC(80;0.236)		BRCA - Breast invasive adenocarcinoma(115;0.198)|LUAD - Lung adenocarcinoma(64;0.247)		GCTGCCCTCCCGCGAAGACCT	0.547													5	130					0.00198382	0.00222061	0.001984	1	0
MIOX	55586	broad.mit.edu	37	22	50926360	50926360	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr22:50926360G>A	uc003bll.1	+	4	337	c.223G>A	c.(223-225)GAG>AAG	p.E75K	MIOX_uc003blm.1_Missense_Mutation_p.E75K|MIOX_uc003bln.1_Missense_Mutation_p.E75K	NM_017584	NP_060054	Q9UGB7	MIOX_HUMAN	myo-inositol oxygenase	75					inositol catabolic process	cytoplasm|inclusion body	aldo-keto reductase (NADP) activity|ferric iron binding|inositol oxygenase activity				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GACAGTCATGGAGGCCGTGGA	0.612													7	46					0	0	0.003080	0	0
GRM7	2917	broad.mit.edu	37	3	7340474	7340474	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:7340474C>T	uc003bqm.2	+	3	1114	c.840C>T	c.(838-840)TCC>TCT	p.S280S	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.S280S|GRM7_uc003bql.2_Silent_p.S280S|GRM7_uc003bqn.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	280	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	CCCCCAACTCCAGGGCCGTCG	0.438													12	34					0	0	0.001368	0	0
GRM7	2917	broad.mit.edu	37	3	7620311	7620311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:7620311G>A	uc003bqm.2	+	8	1992	c.1718G>A	c.(1717-1719)CGA>CAA	p.R573Q	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.R573Q|GRM7_uc003bql.2_Missense_Mutation_p.R573Q|GRM7_uc003bqn.1_Missense_Mutation_p.R156Q|GRM7_uc010hch.1_Missense_Mutation_p.R84Q	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	573	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	AATGAAAATCGAACCGGATGC	0.527													17	110					0	0	0.004990	0	0
IL17RE	132014	broad.mit.edu	37	3	9948439	9948439	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:9948439C>T	uc003btu.2	+	6	533	c.416C>T	c.(415-417)TCC>TTC	p.S139F	CIDEC_uc003bto.2_Intron|IL17RE_uc003btv.2_Missense_Mutation_p.S139F|IL17RE_uc011atn.1_RNA|IL17RE_uc003btw.2_Missense_Mutation_p.S139F|IL17RE_uc003btx.2_Missense_Mutation_p.S23F|IL17RE_uc010hcq.2_Missense_Mutation_p.S139F|IL17RE_uc003bty.2_RNA	NM_153483	NP_705616	Q8NFR9	I17RE_HUMAN	interleukin 17 receptor E isoform 1	139	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane	receptor activity			central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(96;5.34e-64)		CATCACATTTCCATCCCCTCC	0.488													31	103					0	0	0.003755	0	0
PPARG	5468	broad.mit.edu	37	3	12421299	12421299	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:12421299T>G	uc003bwx.2	+	2	270	c.179T>G	c.(178-180)TTT>TGT	p.F60C	PPARG_uc003bwr.2_Missense_Mutation_p.F32C|PPARG_uc003bws.2_Missense_Mutation_p.F32C|PPARG_uc003bwu.2_Missense_Mutation_p.F32C|PPARG_uc003bwv.2_Missense_Mutation_p.F32C|PPARG_uc010hea.1_RNA|PPARG_uc003bwq.1_Missense_Mutation_p.F32C|PPARG_uc010hdz.1_RNA|PPARG_uc003bwt.1_Missense_Mutation_p.F32C|PPARG_uc003bww.1_Missense_Mutation_p.F60C	NM_015869	NP_056953	P37231	PPARG_HUMAN	peroxisome proliferative activated receptor	60					activation of caspase activity|cell fate commitment|cell maturation|cellular response to insulin stimulus|epithelial cell differentiation|glucose homeostasis|induction of apoptosis|innate immune response|lipid homeostasis|lipoprotein transport|long-chain fatty acid transport|low-density lipoprotein particle receptor biosynthetic process|monocyte differentiation|negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|placenta development|positive regulation of fat cell differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to lipid|response to low-density lipoprotein particle stimulus|white fat cell differentiation	cytosol|nucleoplasm	activating transcription factor binding|arachidonic acid binding|drug binding|enzyme binding|prostaglandin receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|kidney(1)	2					Atorvastatin(DB01076)|Icosapent(DB00159)|Pioglitazone(DB01132)|Rosiglitazone(DB00412)|Troglitazone(DB00197)	TCCCACTCCTTTGATATCAAG	0.468			T	PAX8	follicular thyroid		Insulin resistance ; lipodystrophy|familial partial L;diabetes mellitus|insulin-resistantI|with acanthosis nigricans and hypertension						110	473					0	0	0.003610	0	0
NUP210	23225	broad.mit.edu	37	3	13363298	13363298	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:13363298C>T	uc003bxv.1	-	36	5036	c.4953G>A	c.(4951-4953)ACG>ACA	p.T1651T		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1651	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GCTGCTTGTCCGTCAGCCTGT	0.562													43	212					0	0	0.003214	0	0
NUP210	23225	broad.mit.edu	37	3	13368919	13368919	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:13368919G>A	uc003bxv.1	-	32	4388	c.4305C>T	c.(4303-4305)ATC>ATT	p.I1435I		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1435	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GGCCCTTCCCGATCTGCACAA	0.592													6	10					0	0	0.001168	0	0
C3orf20	84077	broad.mit.edu	37	3	14725854	14725854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:14725854G>A	uc003byy.2	+	4	994	c.590G>A	c.(589-591)GGG>GAG	p.G197E	C3orf20_uc003byz.2_Missense_Mutation_p.G75E|C3orf20_uc003bza.2_Missense_Mutation_p.G75E|C3orf20_uc003byx.1_Missense_Mutation_p.G197E	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	197						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						AGCACAGCCGGGAGAAGTGGC	0.547													18	53					0	0	0.007413	0	0
FGD5	152273	broad.mit.edu	37	3	14861871	14861871	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:14861871G>A	uc003bzc.2	+	1	1403	c.1293G>A	c.(1291-1293)GTG>GTA	p.V431V	FGD5_uc011avk.1_Silent_p.V431V	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	431					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						ACCCCTATGTGATGGGAGTGG	0.647													12	40					0	0	0.001368	0	0
SCN5A	6331	broad.mit.edu	37	3	38674787	38674787	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:38674787G>A	uc003cio.2	-	2	206	c.12C>T	c.(10-12)TTC>TTT	p.F4F	SCN5A_uc003cin.2_Silent_p.F4F|SCN5A_uc003cil.3_Silent_p.F4F|SCN5A_uc010hhi.2_Silent_p.F4F|SCN5A_uc010hhk.2_Silent_p.F4F|SCN5A_uc011ayr.1_Silent_p.F4F	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	4					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GAGGTAATAGGAAGTTTGCCA	0.587													13	48					0	0	0.002450	0	0
SCN10A	6336	broad.mit.edu	37	3	38760228	38760228	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:38760228G>A	uc003ciq.2	-	20	3597	c.3597C>T	c.(3595-3597)TTC>TTT	p.F1199F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1199	Helical; Name=S2 of repeat III; (Potential).|III.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GCAGCATCTCGAACACAAAGA	0.498													20	45					0	0	0.008871	0	0
XIRP1	165904	broad.mit.edu	37	3	39227520	39227520	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:39227520C>T	uc003cjk.1	-	2	3638	c.3417G>A	c.(3415-3417)CAG>CAA	p.Q1139Q	XIRP1_uc003cji.2_Intron|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1139							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		AGATGCCATCCTGAATTGTCA	0.617													9	91					0	0	0.008291	0	0
HHATL	57467	broad.mit.edu	37	3	42735179	42735179	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:42735179T>G	uc003clw.2	-	11	1325	c.1178A>C	c.(1177-1179)AAC>ACC	p.N393T	HHATL_uc003clx.2_Missense_Mutation_p.N393T	NM_020707	NP_065758	Q9HCP6	HHATL_HUMAN	hedgehog acyltransferase-like	393					negative regulation of N-terminal protein palmitoylation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm				ovary(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.215)		GCCAAAGCAGTTAAGGAATGA	0.562													9	23					0	0	0.008291	0	0
ZNF445	353274	broad.mit.edu	37	3	44488387	44488387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:44488387G>A	uc003cnf.2	-	8	3124	c.2776C>T	c.(2776-2778)CGT>TGT	p.R926C	ZNF445_uc011azv.1_Missense_Mutation_p.R914C|ZNF445_uc011azw.1_Missense_Mutation_p.R926C	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	926					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		GGCGGGCTACGTTCAGCCTGT	0.498													20	80					0	0	0.008871	0	0
ZNF445	353274	broad.mit.edu	37	3	44491977	44491978	+	Missense_Mutation	DNP	TC	CA	CA			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:44491977_44491978TC>CA	uc003cnf.2	-	6	1129_1130	c.781_782GA>TG	c.(781-783)GAT>TGT	p.D261C	ZNF445_uc011azv.1_Missense_Mutation_p.D249C|ZNF445_uc011azw.1_Missense_Mutation_p.D261C	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	261	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		CAGCATCACATCCCTGTACAGG	0.48													17	45					0	0	0.004672	0	0
TGM4	7047	broad.mit.edu	37	3	44945383	44945383	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:44945383C>T	uc003coc.3	+	9	1052	c.979C>T	c.(979-981)CAT>TAT	p.H327Y		NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	327		By similarity.			peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	CAGGAATTTCCATGTGTGGAC	0.587													25	132					0	0	0.003954	0	0
C3orf71	646450	broad.mit.edu	37	3	48956243	48956243	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:48956243C>T	uc010hkk.1	-	1	576	c.340G>A	c.(340-342)GAT>AAT	p.D114N	ARIH2_uc003cvb.2_5'Flank|ARIH2_uc003cvc.2_5'Flank	NM_001123040	NP_001116512	Q8N7S6	CC071_HUMAN	hypothetical protein LOC646450	114						integral to membrane					0						CGACCCCGATCCGGAAGTGAC	0.682													6	30					0	0	0.001984	0	0
APEH	327	broad.mit.edu	37	3	49713214	49713214	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:49713214C>T	uc003cxf.2	+	4	760	c.360C>T	c.(358-360)TTC>TTT	p.F120F	APEH_uc010hkw.1_Silent_p.F120F	NM_001640	NP_001631	P13798	ACPH_HUMAN	N-acylaminoacyl-peptide hydrolase	120					proteolysis	cytoplasm|nuclear membrane	serine-type endopeptidase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.53e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		AGAAGCAGTTCCTGGAGGTGA	0.587													22	47					0	0	0.002299	0	0
RNF123	63891	broad.mit.edu	37	3	49749921	49749921	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:49749921C>T	uc003cxh.2	+	27	2592	c.2506C>T	c.(2506-2508)CTG>TTG	p.L836L	RNF123_uc010hky.1_Silent_p.L498L|RNF123_uc003cxi.2_RNA	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	836						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		GGAGAAGATGCTGGACATCTA	0.483													4	29					0	0	0.000248	0	0
POC1A	25886	broad.mit.edu	37	3	52183354	52183354	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:52183354G>A	uc003dcu.2	-	4	645	c.327C>T	c.(325-327)GTC>GTT	p.V109V	POC1A_uc003dcv.2_Silent_p.V71V|POC1A_uc003dcw.2_Silent_p.V109V	NM_015426	NP_056241	Q8NBT0	POC1A_HUMAN	WD repeat domain 51A isoform 1	109	WD 3.					centriole|microtubule basal body					0						TGCAGAAGTGGACACTCCTCA	0.517													13	51					0	0	0.001855	0	0
TWF2	11344	broad.mit.edu	37	3	52265180	52265180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:52265180G>A	uc003ddd.2	-	5	597	c.446C>T	c.(445-447)TCG>TTG	p.S149L	TLR9_uc003ddb.2_5'UTR|TLR9_uc003ddc.1_5'Flank|TWF2_uc010hmc.2_Missense_Mutation_p.S149L	NM_007284	NP_009215	Q6IBS0	TWF2_HUMAN	twinfilin-like protein	149						cytoskeleton|perinuclear region of cytoplasm	actin binding|ATP binding			stomach(1)|ovary(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;2.43e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		TCTCTCAGCCGAGGTCAGCGG	0.617													30	136					0	0	0.002836	0	0
ERC2	26059	broad.mit.edu	37	3	55922419	55922419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:55922419C>T	uc003dhr.1	-	14	2818	c.2562G>A	c.(2560-2562)ATG>ATA	p.M854I	ERC2_uc003dhq.1_RNA|ERC2_uc003dht.1_Missense_Mutation_p.M333I	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	854	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GTACTCACTTCATCTCCAGGA	0.532													23	108					0	0	0.002780	0	0
PDE12	201626	broad.mit.edu	37	3	57542496	57542496	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:57542496G>A	uc003diw.3	+	1	516	c.390G>A	c.(388-390)GAG>GAA	p.E130E	PDE12_uc003div.2_Silent_p.E130E	NM_177966	NP_808881	Q6L8Q7	PDE12_HUMAN	phosphodiesterase 12	130							hydrolase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.011)|Kidney(284;0.0127)		ACCGGGAAGAGGCAGTGGCTG	0.662													12	51					0	0	0.003163	0	0
PDZRN3	23024	broad.mit.edu	37	3	73440172	73440172	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:73440172A>C	uc003dpl.1	-	6	1446	c.1350T>G	c.(1348-1350)AGT>AGG	p.S450R	PDZRN3_uc011bgh.1_Missense_Mutation_p.S107R|PDZRN3_uc010hoe.1_Missense_Mutation_p.S148R|PDZRN3_uc011bgf.1_Missense_Mutation_p.S167R|PDZRN3_uc011bgg.1_Missense_Mutation_p.S170R	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	450	PDZ 2.						ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		TTTGTACCTCACTGATATAAA	0.443													46	155					0	0	0.003610	0	0
EPHA3	2042	broad.mit.edu	37	3	89478279	89478279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:89478279G>A	uc003dqy.2	+	12	2323	c.2098G>A	c.(2098-2100)GAA>AAA	p.E700K	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	700	Cytoplasmic (Potential).|Protein kinase.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		GATTGTCACAGAATACATGGA	0.303										TSP Lung(6;0.00050)			8	52					0	0	0.006214	0	0
OR5H15	403274	broad.mit.edu	37	3	97888044	97888044	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:97888044C>T	uc011bgu.1	+	1	501	c.501C>T	c.(499-501)ACC>ACT	p.T167T		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCAGACTAACCTTCTGTAACT	0.333													8	40					0	0	0.003080	0	0
OR5H15	403274	broad.mit.edu	37	3	97888287	97888287	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:97888287C>T	uc011bgu.1	+	1	744	c.744C>T	c.(742-744)GTC>GTT	p.V248V		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCTTCTCTGTCTGTTTATACT	0.428													18	45					0	0	0.006122	0	0
HHLA2	11148	broad.mit.edu	37	3	108073967	108073967	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:108073967C>T	uc003dwy.3	+	5	591	c.424C>T	c.(424-426)CTC>TTC	p.L142F	HHLA2_uc011bhl.1_Missense_Mutation_p.L78F|HHLA2_uc010hpu.2_Missense_Mutation_p.L142F|HHLA2_uc003dwz.2_Missense_Mutation_p.L142F	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	142	Ig-like C1-type.					integral to membrane				ovary(1)	1						TGTAGTTTTTCTCACACCCGT	0.383													12	18					0	0	0.001855	0	0
DZIP3	9666	broad.mit.edu	37	3	108363531	108363531	+	Silent	SNP	C	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:108363531C>A	uc003dxd.2	+	14	2084	c.1662C>A	c.(1660-1662)CCC>CCA	p.P554P	DZIP3_uc003dxf.1_Silent_p.P554P|DZIP3_uc011bhm.1_Silent_p.P5P|DZIP3_uc003dxe.1_Silent_p.P554P|DZIP3_uc003dxg.1_Silent_p.P277P	NM_014648	NP_055463	Q86Y13	DZIP3_HUMAN	DAZ interacting protein 3, zinc finger	554					protein polyubiquitination	cytoplasm	polyubiquitin binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						AGGAGAATCCCATTGAGAATA	0.398													16	68					3.45872e-05	3.88983e-05	0.004007	1	0
CD96	10225	broad.mit.edu	37	3	111319612	111319612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:111319612G>A	uc003dxw.2	+	8	1156	c.986G>A	c.(985-987)GGA>GAA	p.G329E	CD96_uc003dxv.2_Missense_Mutation_p.G313E|CD96_uc003dxx.2_Missense_Mutation_p.G313E|CD96_uc010hpy.1_Missense_Mutation_p.G313E	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	329	Extracellular (Potential).|Ig-like C2-type.				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						GGCAAAGATGGATTTTTGGAA	0.373									Opitz_Trigonocephaly_syndrome				7	39					0	0	0.004482	0	0
ARHGAP31	57514	broad.mit.edu	37	3	119133527	119133527	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:119133527C>T	uc003ecj.3	+	12	3283	c.2751C>T	c.(2749-2751)CCC>CCT	p.P917P		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	917					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						TGACGAGTCCCCTTCACTCTC	0.607													22	85					0	0	0.002780	0	0
STXBP5L	9515	broad.mit.edu	37	3	121001140	121001140	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:121001140A>G	uc003eec.3	+	20	2278	c.2138A>G	c.(2137-2139)AAC>AGC	p.N713S	STXBP5L_uc011bji.1_Intron	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	713					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GGCCTGTCTAACTTTTATCCT	0.388													7	42					0	0	0.006214	0	0
ILDR1	286676	broad.mit.edu	37	3	121712802	121712802	+	Missense_Mutation	SNP	G	A	A	rs146027039		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:121712802G>A	uc003ees.2	-	7	900	c.794C>T	c.(793-795)TCC>TTC	p.S265F	ILDR1_uc003eeq.2_Missense_Mutation_p.S233F|ILDR1_uc003eer.2_Missense_Mutation_p.S221F|ILDR1_uc010hrg.2_Missense_Mutation_p.S176F	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	265	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		CGGGAGGCTGGACGGCAGGGA	0.493													8	42					0	0	0.004482	0	0
KPNA1	3836	broad.mit.edu	37	3	122156098	122156098	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:122156098C>T	uc003efd.1	-	11	1077	c.1041G>A	c.(1039-1041)CTG>CTA	p.L347L	KPNA1_uc003efb.1_Silent_p.L146L|KPNA1_uc003efc.1_Silent_p.L146L|KPNA1_uc011bjr.1_Silent_p.L146L|KPNA1_uc010hrh.2_Silent_p.L146L|KPNA1_uc003efe.2_Silent_p.L347L	NM_002264	NP_002255	P52294	IMA1_HUMAN	karyopherin alpha 1	347	Binding to RAG1.|NLS binding site (minor) (By similarity).|ARM 7.				DNA fragmentation involved in apoptotic nuclear change|NLS-bearing substrate import into nucleus|regulation of DNA recombination|viral genome transport in host cell|viral infectious cycle	cytosol|nuclear pore|nucleoplasm	nuclear localization sequence binding|protein binding|protein transporter activity				0				GBM - Glioblastoma multiforme(114;0.0898)		TTGGGCTACTCAGCAAATGCA	0.343													13	56					0	0	0.001855	0	0
MUC13	56667	broad.mit.edu	37	3	124646598	124646598	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:124646598G>A	uc003ehq.1	-	2	316	c.292C>T	c.(292-294)CCT>TCT	p.P98S		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	98	Thr-rich.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						GTAGGTATAGGAATTGTGGAG	0.428													53	188					0	0	0.003610	0	0
CCDC37	348807	broad.mit.edu	37	3	126132978	126132978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:126132978G>A	uc003eiu.1	+	4	280	c.181G>A	c.(181-183)GAT>AAT	p.D61N	CCDC37_uc010hsg.1_Missense_Mutation_p.D61N	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	61										ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		TGGGGATGTGGATTTCTTCTT	0.567													60	221					0	0	0.003610	0	0
PLXNA1	5361	broad.mit.edu	37	3	126749212	126749212	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:126749212C>T	uc003ejg.2	+	28	5123	c.5119C>T	c.(5119-5121)CAG>TAG	p.Q1707*	PLXNA1_uc003ejh.2_Nonsense_Mutation_p.Q375*	NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1730	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CGACAAGCACCAGATCCACGA	0.622													15	89					0	0	0.002450	0	0
DZIP1L	199221	broad.mit.edu	37	3	137822773	137822773	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:137822773G>A	uc003erq.2	-	2	404	c.41C>T	c.(40-42)CCC>CTC	p.P14L	DZIP1L_uc003err.1_Missense_Mutation_p.P14L	NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	14						intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						CCCAAAGAGGGGGCCACTGAG	0.632													28	155					0	0	0.007291	0	0
PRR23B	389151	broad.mit.edu	37	3	138738753	138738754	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:138738753_138738754GG>AA	uc003esy.1	-	1	1015_1016	c.750_751CC>TT	c.(748-753)CTCCCG>CTTTCG	p.P251S		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	251	Pro-rich.									breast(1)	1						GGGCGTTCCGGGAGCGGCGAGC	0.673													8	38					0	0	0.004672	0	0
SLC9A9	285195	broad.mit.edu	37	3	143185918	143185918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:143185918C>T	uc003evn.2	-	12	1612	c.1430G>A	c.(1429-1431)GGA>GAA	p.G477E		NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	477	Helical; (Potential).				regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						TGTTCCTCCTCCAAATACCCA	0.468													8	19					0	0	0.004482	0	0
AADAC	13	broad.mit.edu	37	3	151545928	151545928	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:151545928C>T	uc003eze.2	+	5	1258	c.1168C>T	c.(1168-1170)CAG>TAG	p.Q390*		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	390	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			ACTTATAAATCAGTATATTGA	0.323													5	48					0	0	0.000602	0	0
MECOM	2122	broad.mit.edu	37	3	169099049	169099049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:169099049C>T	uc011bpj.1	-	2	704	c.301G>A	c.(301-303)GAA>AAA	p.E101K	MECOM_uc003ffl.2_Missense_Mutation_p.E73K|MECOM_uc011bpk.1_Intron|MECOM_uc010hwn.2_Missense_Mutation_p.E101K|MECOM_uc011bpl.1_Missense_Mutation_p.E101K	NM_004991	NP_004982	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform c	Error:Variant_position_missing_in_Q03112_after_alignment					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TCACCTACTTCGATCTTCCTT	0.448													16	86					0	0	0.004007	0	0
NAALADL2	254827	broad.mit.edu	37	3	175520795	175520796	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:175520795_175520796AC>TT	uc003fit.2	+	14	2279_2280	c.2192_2193AC>TT	c.(2191-2193)AAC>ATT	p.N731I		NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	731	Extracellular (Potential).				proteolysis	integral to membrane	peptidase activity			pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		CTTTTCAGAAACATCCTCTACC	0.356													4	19					0	0	0.004672	0	0
FAM131A	131408	broad.mit.edu	37	3	184062652	184062653	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:184062652_184062653GC>TT	uc003fog.2	+	3	2266_2267	c.902_903GC>TT	c.(901-903)TGC>TTT	p.C301F	FAM131A_uc003fob.1_Intron|FAM131A_uc003foc.2_Missense_Mutation_p.C247F|FAM131A_uc003foe.2_Missense_Mutation_p.C247F	NM_144635	NP_653236	Q6UXB0	F131A_HUMAN	hypothetical protein LOC131408 precursor	301						extracellular region				breast(1)	1	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CAGCCACTCTGCCCACCACTAA	0.644													10	32					0	0	0.004672	0	0
LIPH	200879	broad.mit.edu	37	3	185232237	185232237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:185232237C>T	uc003fpm.2	-	8	1165	c.1055G>A	c.(1054-1056)AGA>AAA	p.R352K	LIPH_uc010hyh.2_Missense_Mutation_p.R318K	NM_139248	NP_640341	Q8WWY8	LIPH_HUMAN	lipase, member H precursor	352					lipid catabolic process	extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(1)|pancreas(1)	2	all_cancers(143;8.87e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			AGCTTTGTCTCTCAATTTGAT	0.363													98	400					0	0	0.003610	0	0
TP63	8626	broad.mit.edu	37	3	189612176	189612176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:189612176G>A	uc003fry.2	+	14	2017	c.1928G>A	c.(1927-1929)CGA>CAA	p.R643Q	TP63_uc003frz.2_3'UTR|TP63_uc010hzc.1_3'UTR|TP63_uc003fsc.2_Missense_Mutation_p.R549Q|TP63_uc003fsd.2_3'UTR|TP63_uc010hzd.1_Missense_Mutation_p.R464Q	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	643	Transactivation inhibition.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		GATGCTGTGCGATTCACCCTC	0.552									Hay-Wells_syndrome	HNSCC(45;0.13)			15	79					0	0	0.004007	0	0
CLDN1	9076	broad.mit.edu	37	3	190030677	190030677	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:190030677C>T	uc003fsh.2	-	2	592	c.372G>A	c.(370-372)GCG>GCA	p.A124A		NM_021101	NP_066924	O95832	CLD1_HUMAN	claudin 1	124	Helical; (Potential).				calcium-independent cell-cell adhesion|interspecies interaction between organisms	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity			lung(1)	1	all_cancers(143;2.95e-10)|Ovarian(172;0.0512)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.015)		GAAGAAATATCGCACCCCCAA	0.448													34	105					0	0	0.002445	0	0
SDHAP1	255812	broad.mit.edu	37	3	195701278	195701278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr3:195701278C>T	uc011btq.1	-	8	1215	c.586G>A	c.(586-588)GTG>ATG	p.V196M	SDHAP1_uc003fvx.3_RNA|SDHAP1_uc011btp.1_RNA					SubName: Full=cDNA FLJ56858, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						CAGGCCTGCACGACTCTGCGA	0.537													8	35					0	0	0.001855	0	0
RNF4	6047	broad.mit.edu	37	4	2514858	2514858	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:2514858G>A	uc003gfb.2	+	7	759	c.423G>A	c.(421-423)GAG>GAA	p.E141E	RNF4_uc010icj.2_Missense_Mutation_p.R88K|RNF4_uc003gfc.2_Silent_p.E141E	NM_002938	NP_002929	P78317	RNF4_HUMAN	ring finger protein 4	141	RING-type.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|proteasomal ubiquitin-dependent protein catabolic process|protein autoubiquitination|protein K11-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|protein K63-linked ubiquitination|regulation of kinetochore assembly|regulation of spindle assembly|response to arsenic-containing substance	cytoplasm|PML body	androgen receptor binding|DNA binding|nucleosome binding|sequence-specific DNA binding transcription factor activity|SUMO polymer binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding				0		all_epithelial(65;0.241)				GATACTCAGAGGTAAGTAAAC	0.468													47	168					0	0	0.003610	0	0
EVC2	132884	broad.mit.edu	37	4	5624563	5624563	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:5624563G>C	uc003gij.2	-	14	2256	c.2202C>G	c.(2200-2202)GAC>GAG	p.D734E	EVC2_uc011bwb.1_Missense_Mutation_p.D174E|EVC2_uc003gik.2_Missense_Mutation_p.D654E	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	734	Potential.					integral to membrane				large_intestine(3)|ovary(2)	5						TCCTGAGATCGTCCAGGGCGG	0.647													8	70					0	0	0.004482	0	0
CRMP1	1400	broad.mit.edu	37	4	5868434	5868434	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:5868434G>A	uc003gip.2	-	3	190	c.89C>T	c.(88-90)TCC>TTC	p.S30F	CRMP1_uc003gin.1_Missense_Mutation_p.P4S|CRMP1_uc003giq.2_Missense_Mutation_p.S30F|CRMP1_uc003gir.2_Missense_Mutation_p.S25F|CRMP1_uc003gis.2_Missense_Mutation_p.S144F	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	30					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		AGCATAAAGGGATTGGTCATC	0.473													23	63					0	0	0.005443	0	0
PPP2R2C	5522	broad.mit.edu	37	4	6349733	6349733	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:6349733G>A	uc003gjc.2	-	6	1000	c.630C>T	c.(628-630)ATC>ATT	p.I210I	PPP2R2C_uc003gjb.2_Silent_p.I193I|PPP2R2C_uc011bwd.1_Silent_p.I203I|PPP2R2C_uc011bwe.1_Silent_p.I203I|PPP2R2C_uc003gja.2_Silent_p.I210I|PPP2R2C_uc003gjd.1_Silent_p.I298I	NM_020416	NP_065149	Q9Y2T4	2ABG_HUMAN	gamma isoform of regulatory subunit B55, protein	210					signal transduction	protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						TGATGTCCACGATGTCTGGGG	0.597													11	46					0	0	0.001368	0	0
PPP2R2C	5522	broad.mit.edu	37	4	6380249	6380249	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:6380249G>A	uc003gjc.2	-	3	589	c.219C>T	c.(217-219)TTC>TTT	p.F73F	PPP2R2C_uc003gjb.2_Silent_p.F56F|PPP2R2C_uc011bwd.1_Silent_p.F66F|PPP2R2C_uc011bwe.1_Silent_p.F66F|PPP2R2C_uc003gja.2_Silent_p.F73F|PPP2R2C_uc003gjd.1_Silent_p.F161F	NM_020416	NP_065149	Q9Y2T4	2ABG_HUMAN	gamma isoform of regulatory subunit B55, protein	73					signal transduction	protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						CGTGGCTCTGGAAAGTGCTGT	0.577													33	91					0	0	0.003271	0	0
ZNF518B	85460	broad.mit.edu	37	4	10447100	10447100	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:10447100G>A	uc003gmn.2	-	3	1340	c.853C>T	c.(853-855)CAA>TAA	p.Q285*		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	285					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						ACATCTTTTTGGTATTCCTTT	0.353													26	128					0	0	0.003330	0	0
LDB2	9079	broad.mit.edu	37	4	16760786	16760786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:16760786C>T	uc003goz.2	-	2	546	c.230G>A	c.(229-231)CGA>CAA	p.R77Q	LDB2_uc003gpa.2_Missense_Mutation_p.R77Q|LDB2_uc003gpb.2_Missense_Mutation_p.R77Q|LDB2_uc011bxh.1_Missense_Mutation_p.R77Q|LDB2_uc010iee.2_Missense_Mutation_p.R77Q	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	77							LIM domain binding|transcription cofactor activity				0						CTTACTGTATCGCTTTGGTCC	0.428													8	35					0	0	0.003080	0	0
SLIT2	9353	broad.mit.edu	37	4	20525515	20525515	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:20525515C>T	uc003gpr.1	+	13	1467	c.1263C>T	c.(1261-1263)GCC>GCT	p.A421A	SLIT2_uc003gps.1_Silent_p.A421A	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	421					apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CTCTTCGGGCCATTCAAACTA	0.418													9	93					0	0	0.006214	0	0
SLIT2	9353	broad.mit.edu	37	4	20620412	20620412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:20620412G>A	uc003gpr.1	+	37	4574	c.4370G>A	c.(4369-4371)AGG>AAG	p.R1457K	SLIT2_uc003gps.1_Missense_Mutation_p.R1449K	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1457	CTCK.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CGAGGGGAAAGGATAAGAGAT	0.448													14	63					0	0	0.002450	0	0
PCDH7	5099	broad.mit.edu	37	4	30723223	30723223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:30723223G>A	uc003gsk.1	+	1	1187	c.179G>A	c.(178-180)GGA>GAA	p.G60E	PCDH7_uc011bxw.1_Missense_Mutation_p.G60E|PCDH7_uc011bxx.1_Missense_Mutation_p.G60E	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	60	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						ATCGTGACCGGATCGGGTGAG	0.677													8	37					0	0	0.003080	0	0
ARAP2	116984	broad.mit.edu	37	4	36083903	36083903	+	Missense_Mutation	SNP	C	T	T	rs144848991		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:36083903C>T	uc003gsq.1	-	30	4852	c.4514G>A	c.(4513-4515)GGA>GAA	p.G1505E		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1505	PH 5.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TGCGGTCAATCCCCAGCTGCA	0.308													7	15					0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	4	69343184	69343184	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:69343184T>A	uc003hdz.3	+	8	869	c.805T>A	c.(805-807)TAC>AAC	p.Y269N		NM_014058	NP_054777			transmembrane protease, serine 11E																		CCATGAAAAATACAAACACCC	0.418													48	203					0	0	0.003610	0	0
UGT2A3	79799	broad.mit.edu	37	4	69817217	69817217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:69817217C>T	uc003hef.2	-	1	293	c.262G>A	c.(262-264)GAA>AAA	p.E88K	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	88	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						ACAAATATTTCATTTTCTTCT	0.363													6	45					0	0	0.001168	0	0
UGT2A1	10941	broad.mit.edu	37	4	70513009	70513009	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:70513009G>A	uc003hem.3	-	1	417	c.354C>T	c.(352-354)TTC>TTT	p.F118F	UGT2A1_uc011caq.1_Silent_p.F118F|UGT2A1_uc010ihu.2_Silent_p.F118F|UGT2A1_uc010iht.2_Silent_p.F118F	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	118	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						ACACCATGTGGAAGTCCTTGA	0.428													11	43					0	0	0.001368	0	0
ENAM	10117	broad.mit.edu	37	4	71509905	71509905	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:71509905A>G	uc011caw.1	+	9	3043	c.2762A>G	c.(2761-2763)GAT>GGT	p.D921G		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	921					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			CAGACAAGAGATATCATCTCC	0.493													20	45					0	0	0.001882	0	0
SHROOM3	57619	broad.mit.edu	37	4	77631427	77631427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:77631427C>T	uc011cbx.1	+	3	1395	c.442C>T	c.(442-444)CGG>TGG	p.R148W	SHROOM3_uc011cbz.1_5'UTR	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	148					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GGTTAAACTTCGGCTGAAGCA	0.577													9	30					0	0	0.006214	0	0
SHROOM3	57619	broad.mit.edu	37	4	77660118	77660118	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:77660118C>T	uc011cbx.1	+	5	1745	c.792C>T	c.(790-792)TCC>TCT	p.S264S	SHROOM3_uc011cbz.1_Silent_p.S88S|SHROOM3_uc003hkf.1_Silent_p.S139S|SHROOM3_uc003hkg.2_Silent_p.S42S	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	264					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GCTCTTTCTCCACCAGTTCTA	0.557													8	31					0	0	0.003080	0	0
SEPT11	55752	broad.mit.edu	37	4	77941690	77941690	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:77941690C>T	uc003hkj.2	+	7	982	c.820C>T	c.(820-822)CGA>TGA	p.R274*	SEPT11_uc010ijh.1_Nonsense_Mutation_p.R266*|SEPT11_uc011cca.1_Nonsense_Mutation_p.R284*|SEPT11_uc003hkk.1_Nonsense_Mutation_p.R74*	NM_018243	NP_060713	Q9NVA2	SEP11_HUMAN	septin 11	274					cell cycle|cell division|protein heterooligomerization	axon|cell junction|dendritic spine|septin complex|stress fiber|synapse	GTP binding|protein binding				0						TGTGAAACTTCGAGAGATGCT	0.473													10	45					0	0	0.008291	0	0
FRAS1	80144	broad.mit.edu	37	4	79440574	79440574	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:79440574C>T	uc003hlb.2	+	67	10919	c.10479C>T	c.(10477-10479)TCC>TCT	p.S3493S		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3488	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GCTGGGCCTCCTTGGAGCACC	0.532													43	183					0	0	0.008740	0	0
SPARCL1	8404	broad.mit.edu	37	4	88416266	88416267	+	Missense_Mutation	DNP	AA	TC	TC			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:88416266_88416267AA>TC	uc010ikm.2	-	4	639_640	c.67_68TT>GA	c.(67-69)TTA>GAA	p.L23E	SPARCL1_uc011cdc.1_Intron|SPARCL1_uc003hqs.3_Missense_Mutation_p.L23E|SPARCL1_uc011cdd.1_5'UTR|SPARCL1_uc003hqt.2_Missense_Mutation_p.L23E	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	23					signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		ATCAGATAATAATCTTGCATTT	0.342													9	75					0	0	0.004672	0	0
SPP1	6696	broad.mit.edu	37	4	88903754	88903754	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:88903754G>A	uc003hra.2	+	7	816	c.651G>A	c.(649-651)TGG>TGA	p.W217*	SPP1_uc003hrb.2_Nonsense_Mutation_p.W190*|SPP1_uc003hrc.2_Nonsense_Mutation_p.W203*|SPP1_uc011cde.1_Nonsense_Mutation_p.W230*|SPP1_uc003hrd.2_Nonsense_Mutation_p.W176*	NM_001040058	NP_001035147	P10451	OSTP_HUMAN	secreted phosphoprotein 1 isoform a	217					biomineral tissue development|cell adhesion|decidualization|embryo implantation|ossification|response to vitamin D	extracellular space	cytokine activity			ovary(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-05)		CTTCTGATTGGGACAGCCGTG	0.532													28	87					0	0	0.001786	0	0
GRID2	2895	broad.mit.edu	37	4	94377028	94377028	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:94377028G>A	uc011cdt.1	+	11	2019	c.1761G>A	c.(1759-1761)TTG>TTA	p.L587L	GRID2_uc011cdu.1_Silent_p.L492L	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	587	Helical; (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TCTACCTCTTGAACTGGCTTA	0.453													26	85					0	0	0.006320	0	0
ADH1B	125	broad.mit.edu	37	4	100235103	100235103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:100235103C>T	uc003hus.3	-	6	787	c.703G>A	c.(703-705)GAG>AAG	p.E235K	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.E195K|ADH1B_uc011ceh.1_Missense_Mutation_p.E80K|ADH1B_uc011cei.1_Missense_Mutation_p.E195K	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	235				E -> V (in Ref. 13; AAA51592).	ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	GCACCCAACTCTTTGGCCTTT	0.483													62	271					0	0	0.003610	0	0
EEF1A1P9	441032	broad.mit.edu	37	4	106406081	106406082	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:106406081_106406082GG>AA	uc003hxt.1	+	1	219_220	c.89_90GG>AA	c.(88-90)TGG>TAA	p.W30*		NR_003586				SubName: Full=Eukaryotic translation elongation factor 1 alpha; Flags: Fragment;												0						ATCTCTTTGTGGAAATTTGAGA	0.455													12	52					0	0	0.004672	0	0
NPNT	255743	broad.mit.edu	37	4	106879666	106879666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:106879666G>A	uc003hya.2	+	9	1403	c.1198G>A	c.(1198-1200)GAA>AAA	p.E400K	NPNT_uc011cfc.1_Missense_Mutation_p.E417K|NPNT_uc011cfd.1_Missense_Mutation_p.E430K|NPNT_uc011cfe.1_Intron|NPNT_uc010ilt.1_Intron|NPNT_uc011cff.1_Intron|NPNT_uc010ilu.1_Missense_Mutation_p.E296K	NM_001033047	NP_001028219	Q6UXI9	NPNT_HUMAN	nephronectin precursor	400					cell differentiation	membrane	calcium ion binding			skin(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;5.41e-07)		TGAAATATTTGAAATAGAAAG	0.388													6	26					0	0	0.001984	0	0
PLA2G12A	81579	broad.mit.edu	37	4	110638855	110638855	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:110638855G>A	uc003hzp.2	-	3	577	c.300C>T	c.(298-300)ATC>ATT	p.I100I	PLA2G12A_uc010img.2_Silent_p.I98I	NM_030821	NP_110448	Q9BZM1	PG12A_HUMAN	phospholipase A2, group XIIA precursor	100					lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|calcium-dependent phospholipase A2 activity				0				OV - Ovarian serous cystadenocarcinoma(123;0.000268)		TCAGGGAAGGGATACCAATGT	0.408													14	77					0	0	0.003163	0	0
CFI	3426	broad.mit.edu	37	4	110667389	110667389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:110667389C>T	uc003hzr.3	-	11	1626	c.1418G>A	c.(1417-1419)GGA>GAA	p.G473E	CFI_uc003hzq.2_Missense_Mutation_p.G270E|CFI_uc011cft.1_Missense_Mutation_p.G481E|CFI_uc003hzs.3_Missense_Mutation_p.G466E	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	473	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		TTTTTCTCGTCCCCAGCCAGA	0.418													7	32					0	0	0.001984	0	0
TBC1D9	23158	broad.mit.edu	37	4	141583072	141583072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:141583072C>T	uc010ioj.2	-	10	2050	c.1778G>A	c.(1777-1779)CGA>CAA	p.R593Q		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	593	Rab-GAP TBC.					intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				GTTGGGATTTCGAAAAGCATA	0.398													12	26					0	0	0.000978	0	0
TBC1D9	23158	broad.mit.edu	37	4	141600151	141600151	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:141600151G>A	uc010ioj.2	-	5	1068	c.796C>T	c.(796-798)CGA>TGA	p.R266*		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	266						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				GGCAGGGATCGATCTTGTTCA	0.423													34	149					0	0	0.002836	0	0
C4orf51	646603	broad.mit.edu	37	4	146653646	146653646	+	Silent	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:146653646T>C	uc003ikk.2	+	6	543	c.543T>C	c.(541-543)TCT>TCC	p.S181S		NM_001080531	NP_001074000	C9J302	CD051_HUMAN	chromosome 4 open reading frame 51	181											0						TTTGCTCATCTGAGGATTCAG	0.502													8	22					0	0	0.004482	0	0
FSTL5	56884	broad.mit.edu	37	4	162459348	162459348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:162459348G>A	uc003iqh.2	-	10	1718	c.1282C>T	c.(1282-1284)CTT>TTT	p.L428F	FSTL5_uc003iqi.2_Missense_Mutation_p.L427F|FSTL5_uc010iqv.2_Missense_Mutation_p.L427F	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	428						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TCCACAAAAAGAGAAGAGATG	0.408													28	113					0	0	0.002096	0	0
TKTL2	84076	broad.mit.edu	37	4	164394562	164394562	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:164394562C>T	uc003iqp.3	-	1	486	c.325G>A	c.(325-327)GAG>AAG	p.E109K		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	109						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GGGTGTCTCTCCAAGTCGCTG	0.532													5	29					0	0	0.001168	0	0
TLL1	7092	broad.mit.edu	37	4	166913964	166913964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:166913964G>A	uc003irh.1	+	3	936	c.289G>A	c.(289-291)GGA>AGA	p.G97R	TLL1_uc011cjn.1_Missense_Mutation_p.G97R|TLL1_uc011cjo.1_5'UTR	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	97					cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		AGGTGGACTTGGAGACCATGC	0.363													14	56					0	0	0.002450	0	0
ODZ3	55714	broad.mit.edu	37	4	183651352	183651352	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:183651352G>A	uc003ivd.1	+	14	2623	c.2586_splice	c.e14-1	p.S862_splice	ODZ3_uc003ive.1_Splice_Site_p.S268_splice	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3						signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TTTTCCAACAGCCTTGCATCT	0.373													15	62					0	0	0.003163	0	0
ODZ3	55714	broad.mit.edu	37	4	183652127	183652127	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:183652127T>G	uc003ivd.1	+	15	2839	c.2802T>G	c.(2800-2802)AAT>AAG	p.N934K	ODZ3_uc003ive.1_Missense_Mutation_p.N340K	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	934	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TTCCATGGAATGTCTTTTATG	0.433													4	36					0	0	0.000248	0	0
ODZ3	55714	broad.mit.edu	37	4	183664448	183664448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr4:183664448G>A	uc003ivd.1	+	18	3542	c.3505G>A	c.(3505-3507)GGT>AGT	p.G1169S	ODZ3_uc003ive.1_Missense_Mutation_p.G575S	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1169	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TCAAGCTGATGGTAACAAGTT	0.537													5	31					0	0	0.000602	0	0
SLC6A18	348932	broad.mit.edu	37	5	1244488	1244488	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:1244488G>A	uc003jby.1	+	10	1619	c.1496G>A	c.(1495-1497)CGG>CAG	p.R499Q		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	499	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GGAATGAAACGGTGAGCTGCC	0.597													10	68					0	0	0.008291	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5240021	5240021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:5240021G>A	uc003jdl.2	+	16	2644	c.2506G>A	c.(2506-2508)GAG>AAG	p.E836K	ADAMTS16_uc003jdk.1_Missense_Mutation_p.E836K	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	836	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						ACCAACCAACGAGACACTGAT	0.493													20	90					0	0	0.002299	0	0
DNAH5	1767	broad.mit.edu	37	5	13769610	13769610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:13769610C>T	uc003jfd.2	-	57	9762	c.9720G>A	c.(9718-9720)ATG>ATA	p.M3240I	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3240	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCCCACCCACCATGTCGGCTT	0.418									Kartagener_syndrome				24	82					0	0	0.004656	0	0
DNAH5	1767	broad.mit.edu	37	5	13883121	13883121	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:13883121G>A	uc003jfd.2	-	20	3108	c.3066C>T	c.(3064-3066)GTC>GTT	p.V1022V		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1022	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CAGGGGCCATGACGATGTTGG	0.522									Kartagener_syndrome				22	87					0	0	0.001882	0	0
TRIO	7204	broad.mit.edu	37	5	14304662	14304662	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:14304662C>T	uc003jff.2	+	8	1467	c.1461C>T	c.(1459-1461)CAC>CAT	p.H487H	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Silent_p.H438H|TRIO_uc003jfh.1_Silent_p.H136H	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	487					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					TTCATCACCACCAGGGAATAT	0.443													14	74					0	0	0.002450	0	0
CDH18	1016	broad.mit.edu	37	5	19473723	19473723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:19473723C>T	uc003jgc.2	-	12	2362	c.1985G>A	c.(1984-1986)GGA>GAA	p.G662E	CDH18_uc003jgd.2_Missense_Mutation_p.G662E|CDH18_uc011cnm.1_3'UTR	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	662	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					CTCTCCGCCTCCTTCATCATC	0.498													36	142					0	0	0.003755	0	0
Unknown	0	broad.mit.edu	37	5	33162559	33162559	+	RNA	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:33162559C>T	uc003jhx.2	+	1		c.294C>T								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		TGAGCTGGTTCGTACCAAGAC	0.517													8	26					0	0	0.004482	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049478	36049478	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:36049478A>G	uc003jjz.1	-	4	449	c.356T>C	c.(355-357)TTG>TCG	p.L119S	UGT3A2_uc011cos.1_Missense_Mutation_p.L85S|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	119	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ACTGCACTGCAACGCCAAGTA	0.299													6	51					0	0	0.001984	0	0
C7	730	broad.mit.edu	37	5	40958202	40958202	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:40958202G>A	uc003jmh.2	+	11	1442	c.1328G>A	c.(1327-1329)TGG>TAG	p.W443*	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	443	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				TACCTGAAATGGGCTCTTGAA	0.428													9	22					0	0	0.004482	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41019062	41019062	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:41019062G>A	uc003jmj.3	-	25	2990	c.2500C>T	c.(2500-2502)CGG>TGG	p.R834W	HEATR7B2_uc003jmi.3_Missense_Mutation_p.R389W	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	834							binding			ovary(6)|central_nervous_system(2)	8						AGCAGCCTCCGAATATTCTCC	0.463													8	30					0	0	0.003080	0	0
C6	729	broad.mit.edu	37	5	41149459	41149459	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:41149459G>A	uc003jmk.2	-	17	2717	c.2507C>T	c.(2506-2508)TCC>TTC	p.S836F	C6_uc003jml.1_Missense_Mutation_p.S836F	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	836	C5b-binding domain.|Complement control factor I module 1.|Kazal-like 1.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				GTCTTGGCAGGAACCAATATG	0.423													24	117					0	0	0.002780	0	0
ZNF131	7690	broad.mit.edu	37	5	43161823	43161823	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:43161823T>G	uc011cpw.1	+	5	880	c.844T>G	c.(844-846)TCA>GCA	p.S282A	ZNF131_uc010ivl.1_Missense_Mutation_p.S248A|ZNF131_uc003jnj.3_Missense_Mutation_p.S3A|ZNF131_uc003jnk.2_Missense_Mutation_p.S248A|ZNF131_uc003jnn.3_Missense_Mutation_p.S3A|ZNF131_uc003jnl.1_Intron|ZNF131_uc010ivm.1_Intron	NM_003432	NP_003423	P52739	ZN131_HUMAN	zinc finger protein 131	282	C2H2-type 1.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GCACATGAAATCACACTCCAC	0.383													7	25					0	0	0.003080	0	0
TMEM174	134288	broad.mit.edu	37	5	72469697	72469697	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:72469697G>A	uc010izc.2	+	1	674	c.626_splice	c.e1+1	p.R209_splice		NM_153217	NP_694949	Q8WUU8	TM174_HUMAN	transmembrane protein 174							integral to membrane				ovary(1)	1		Lung NSC(167;0.0378)|Ovarian(174;0.0908)|Prostate(461;0.165)		OV - Ovarian serous cystadenocarcinoma(47;1.46e-54)		GAAATCACAGGTATGGCGTGT	0.488													15	74					0	0	0.004990	0	0
F2R	2149	broad.mit.edu	37	5	76028685	76028685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:76028685C>T	uc003ken.3	+	2	900	c.635C>T	c.(634-636)TCC>TTC	p.S212F		NM_001992	NP_001983	P25116	PAR1_HUMAN	coagulation factor II receptor precursor	212	Cytoplasmic (Potential).				activation of caspase activity|anatomical structure morphogenesis|connective tissue replacement involved in inflammatory response wound healing|negative regulation of cell proliferation|platelet activation|positive regulation of blood coagulation|positive regulation of cell migration|positive regulation of collagen biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JAK-STAT cascade|positive regulation of MAPKKK cascade|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of transcription, DNA-dependent|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	caveola|extracellular region|Golgi apparatus|integral to plasma membrane|platelet dense tubular network	receptor binding|thrombin receptor activity			ovary(3)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)	Streptokinase(DB00086)	CAGTCCCTCTCCTGGCGTACT	0.532													31	144					0	0	0.002445	0	0
F2RL1	2150	broad.mit.edu	37	5	76129513	76129513	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:76129513T>A	uc003keo.2	+	2	1256	c.1081T>A	c.(1081-1083)TGC>AGC	p.C361S		NM_005242	NP_005233	P55085	PAR2_HUMAN	coagulation factor II (thrombin) receptor-like 1	361	Cytoplasmic (Potential).			Missing: Abolishes signaling through accumulation of intracellular calcium and phosphoinositide; no effect in signaling through MAPK.|C->A: Loss of palmitoylation; increases surface expression and internalization following trypsin activation, decreases sensitivity and intracellular calcium signaling, increases ERK activation through G(i) subunit alpha.	blood coagulation|elevation of cytosolic calcium ion concentration|positive regulation of leukocyte chemotaxis|positive regulation of positive chemotaxis|regulation of blood coagulation	Golgi apparatus|integral to plasma membrane	receptor binding|thrombin receptor activity			central_nervous_system(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;7.7e-51)|Epithelial(54;2.77e-45)|all cancers(79;3.47e-41)		CGCTCTCCTTTGCCGAAGTGT	0.458													90	419					0	0	0.003610	0	0
GPR98	84059	broad.mit.edu	37	5	89990217	89990217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:89990217G>A	uc003kju.2	+	33	7740	c.7644G>A	c.(7642-7644)ATG>ATA	p.M2548I	GPR98_uc003kjt.2_Missense_Mutation_p.M254I|GPR98_uc003kjv.2_Missense_Mutation_p.M148I	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2548	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTCACCTCATGAACATTTCAG	0.393													16	95					0	0	0.004007	0	0
GPR98	84059	broad.mit.edu	37	5	89990344	89990344	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:89990344G>A	uc003kju.2	+	33	7867	c.7771G>A	c.(7771-7773)GAA>AAA	p.E2591K	GPR98_uc003kjt.2_Missense_Mutation_p.E297K|GPR98_uc003kjv.2_Missense_Mutation_p.E191K	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2591	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CAATACTTCCGAAGATGGCTT	0.458													42	195					0	0	0.003610	0	0
GPR98	84059	broad.mit.edu	37	5	90041427	90041427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:90041427G>A	uc003kju.2	+	52	10885	c.10789G>A	c.(10789-10791)GAA>AAA	p.E3597K	GPR98_uc003kjt.2_Missense_Mutation_p.E1303K|GPR98_uc003kjv.2_Missense_Mutation_p.E1197K	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3597	Calx-beta 23.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ACTGATATTTGAACCTGGTGA	0.313													9	46					0	0	0.004482	0	0
STARD4	134429	broad.mit.edu	37	5	110835597	110835597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:110835597C>T	uc003kph.1	-	6	689	c.605G>A	c.(604-606)CGA>CAA	p.R202Q	STARD4_uc010jbw.1_Missense_Mutation_p.R104Q|STARD4_uc010jbx.1_Missense_Mutation_p.R104Q|STARD4_uc003kpi.1_RNA	NM_139164	NP_631903	Q96DR4	STAR4_HUMAN	StAR-related lipid transfer (START) domain	202	START.				lipid transport		lipid binding			ovary(1)	1		all_cancers(142;0.00259)|all_epithelial(76;8.32e-05)|Prostate(80;0.0115)|Colorectal(10;0.0959)|Ovarian(225;0.156)|all_lung(232;0.18)|Lung NSC(167;0.248)		OV - Ovarian serous cystadenocarcinoma(64;4.91e-09)|Epithelial(69;1.39e-08)|all cancers(49;2.34e-06)|COAD - Colon adenocarcinoma(37;0.049)|Colorectal(14;0.138)		TAAAGCTTTTCGTAAATCACC	0.403													7	57					0	0	0.001984	0	0
TSSK1B	83942	broad.mit.edu	37	5	112769837	112769837	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:112769837T>C	uc003kqm.2	-	1	892	c.700A>G	c.(700-702)AAC>GAC	p.N234D	MCC_uc003kql.3_Intron	NM_032028	NP_114417	Q9BXA7	TSSK1_HUMAN	testis-specific serine kinase 1	234	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|skin(2)|stomach(1)	5		all_cancers(142;0.0138)|all_epithelial(76;0.000445)|Colorectal(10;0.00814)|Prostate(80;0.0115)|Ovarian(225;0.156)		Epithelial(69;4.15e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.49e-08)|all cancers(49;3.2e-06)|COAD - Colon adenocarcinoma(37;0.0371)|Colorectal(14;0.0449)		CGTGGGAAGTTGACGCGGTGC	0.587													15	48					0	0	0.003163	0	0
AQPEP	206338	broad.mit.edu	37	5	115335561	115335561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:115335561G>A	uc003kro.2	+	7	1641	c.1477G>A	c.(1477-1479)GAA>AAA	p.E493K	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	493	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						CAAAACAAGTGAAATACAGGA	0.353													10	42					0	0	0.006214	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129015588	129015588	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:129015588C>T	uc003kvb.1	+	17	2620	c.2620C>T	c.(2620-2622)CCT>TCT	p.P874S	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	874	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TGCCAAAGGTCCTACTACAGC	0.443													7	54					0	0	0.004482	0	0
AFF4	27125	broad.mit.edu	37	5	132262827	132262827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:132262827G>A	uc003kyd.2	-	5	1444	c.1036C>T	c.(1036-1038)CCT>TCT	p.P346S	AFF4_uc011cxk.1_Missense_Mutation_p.P24S|AFF4_uc003kye.1_Missense_Mutation_p.P346S|AFF4_uc003kyf.3_Missense_Mutation_p.P346S	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	346	Ser-rich.				transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GTTGGAAAAGGAAATTTGGAA	0.333													5	35					0	0	0.001168	0	0
PCDHA5	56143	broad.mit.edu	37	5	140203659	140203659	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:140203659G>A	uc003lhl.2	+	1	2299	c.2299G>A	c.(2299-2301)GAC>AAC	p.D767N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.D767N|PCDHA5_uc003lhj.1_Missense_Mutation_p.D767N	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	767	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCCAAAACAGACCTCATGGC	0.542													8	33					0	0	0.003080	0	0
PCDHA6	56142	broad.mit.edu	37	5	140208743	140208743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:140208743C>T	uc003lho.2	+	1	1094	c.1067C>T	c.(1066-1068)TCC>TTC	p.S356F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.S356F|PCDHA6_uc011dab.1_Missense_Mutation_p.S356F	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	356	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTTCCTTATCCTTGCCTGTA	0.498													20	92					0	0	0.001786	0	0
PCDHA7	56141	broad.mit.edu	37	5	140216149	140216149	+	Silent	SNP	C	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:140216149C>G	uc003lhq.2	+	1	2181	c.2181C>G	c.(2179-2181)TCC>TCG	p.S727S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Silent_p.S727S	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	727	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGCGCCGTCCTCTGAGGGCG	0.612													12	45					0	0	0.001368	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222932	140222932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:140222932C>T	uc003lhs.2	+	1	2026	c.2026C>T	c.(2026-2028)CCA>TCA	p.P676S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.P676S	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	676	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGGCCAGGCTCCAAAAGCGTC	0.637													21	71					0	0	0.001523	0	0
PCDHA9	9752	broad.mit.edu	37	5	140229995	140229995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:140229995G>A	uc003lhu.2	+	1	2639	c.1915G>A	c.(1915-1917)GAA>AAA	p.E639K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.E639K	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	639	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCCCTGGACGAAACGGACGC	0.667													5	53					0	0	0.001168	0	0
PCDHA11	56138	broad.mit.edu	37	5	140249777	140249777	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:140249777G>A	uc003lia.2	+	1	1947	c.1089G>A	c.(1087-1089)CAG>CAA	p.Q363Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.Q363Q	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	363	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGACGCTCAGCCCAGCACGG	0.582													10	52					0	0	0.006214	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140347637	140347637	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:140347637G>A	uc003lii.2	+	1	1526	c.1286G>A	c.(1285-1287)CGA>CAA	p.R429Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.R429Q	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	429	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding	p.R429R(1)		ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCACTGGACCGAGAGCGGGTG	0.572													22	97					0	0	0.002780	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140389474	140389474	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:140389474G>A	uc003lii.2	+	4	3216	c.2976G>A	c.(2974-2976)CAG>CAA	p.Q992Q	PCDHA1_uc003lha.2_Silent_p.Q671Q|PCDHA1_uc003lhb.2_Silent_p.Q935Q|PCDHA2_uc003lhd.2_Silent_p.Q933Q|PCDHA3_uc003lhf.2_Silent_p.Q935Q|PCDHA4_uc003lhi.2_Silent_p.Q932Q|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Silent_p.Q921Q|PCDHA6_uc003lhn.2_Silent_p.Q671Q|PCDHA6_uc003lho.2_Silent_p.Q935Q|PCDHA7_uc003lhq.2_Silent_p.Q922Q|PCDHA8_uc003lhs.2_Silent_p.Q935Q|PCDHA9_uc003lhu.2_Silent_p.Q935Q|PCDHA10_uc003lhw.2_Silent_p.Q670Q|PCDHA10_uc003lhx.2_Silent_p.Q933Q|PCDHA11_uc003lia.2_Silent_p.Q934Q|PCDHA12_uc003lic.2_Silent_p.Q926Q|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Silent_p.Q935Q|PCDHAC1_uc003lih.2_Silent_p.Q948Q	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	992	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACAAGACCCAGGAGAAAAAAG	0.348													16	60					0	0	0.004990	0	0
PCDHB7	56129	broad.mit.edu	37	5	140552966	140552966	+	Missense_Mutation	SNP	G	A	A	rs146757937		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:140552966G>A	uc003lit.2	+	1	724	c.550G>A	c.(550-552)GAT>AAT	p.D184N		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	184	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TAATGTCCATGATAGCGGGGA	0.478													10	39					0	0	0.006214	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553189	140553189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:140553189G>A	uc003lit.2	+	1	947	c.773G>A	c.(772-774)GGT>GAT	p.G258D		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	258	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGCCCCGTTGGTTCCATGGTT	0.498													9	59					0	0	0.006214	0	0
PCDHB12	56124	broad.mit.edu	37	5	140589876	140589876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:140589876C>T	uc003liz.2	+	1	1586	c.1397C>T	c.(1396-1398)CCC>CTC	p.P466L	PCDHB12_uc011dak.1_Missense_Mutation_p.P129L	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	466	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AACAACAGCCCCGCCCTGCAC	0.637													12	84					0	0	0.002450	0	0
PCDHB13	56123	broad.mit.edu	37	5	140595300	140595300	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:140595300C>T	uc003lja.1	+	1	1792	c.1605C>T	c.(1603-1605)GAC>GAT	p.D535D		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	535	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCGCTTCAGACCACGGCTCCC	0.677													15	52					0	0	0.003163	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140719379	140719379	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:140719379C>T	uc003ljk.1	+	1	1026	c.841C>T	c.(841-843)CTA>TTA	p.L281L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.L281L	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	281	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTATATTTTCTAGAGAAAAG	0.468													29	127					0	0	0.007291	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140745293	140745293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:140745293C>T	uc003lju.1	+	1	1396	c.1396C>T	c.(1396-1398)CCC>TCC	p.P466S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Missense_Mutation_p.P466S	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	466	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGAAAACAATCCCAGAGGTGT	0.532													32	125					0	0	0.001786	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140784793	140784793	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:140784793C>T	uc003lkh.1	+	1	2274	c.2274C>T	c.(2272-2274)TCC>TCT	p.S758S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Silent_p.S758S|PCDHGB6_uc003lki.1_5'Flank|PCDHGB6_uc003lkj.1_5'Flank	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	758	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGAGTTCTCCCTCACCGCTG	0.537													11	53					0	0	0.002450	0	0
SH3RF2	153769	broad.mit.edu	37	5	145439658	145439658	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:145439658C>T	uc003lnt.2	+	9	2023	c.1785C>T	c.(1783-1785)TCC>TCT	p.S595S	SH3RF2_uc011dbl.1_Silent_p.S595S|SH3RF2_uc011dbm.1_Silent_p.S80S|SH3RF2_uc003lnu.2_Silent_p.S86S|SH3RF2_uc011dbn.1_Silent_p.S86S|SH3RF2_uc011dbo.1_Silent_p.S52S	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	595							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGATCCACTCCGCGGCCAGCT	0.632													11	43					0	0	0.001368	0	0
PDE6A	5145	broad.mit.edu	37	5	149242808	149242808	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:149242808C>T	uc003lrg.3	-	21	2500	c.2380G>A	c.(2380-2382)GAG>AAG	p.E794K		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	794					cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			GGGGTGATCTCCTCGTGGAAA	0.557													21	60					0	0	0.008871	0	0
ARSI	340075	broad.mit.edu	37	5	149677766	149677766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:149677766G>A	uc003lrv.2	-	2	1310	c.721C>T	c.(721-723)CCC>TCC	p.P241S		NM_001012301	NP_001012301	Q5FYB1	ARSI_HUMAN	arylsulfatase family, member I precursor	241						endoplasmic reticulum|extracellular region	arylsulfatase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GACTGCAGGGGTGTGTGTACT	0.622													9	51					0	0	0.008291	0	0
DCTN4	51164	broad.mit.edu	37	5	150112930	150112930	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:150112930C>T	uc003lsv.2	-	5	639	c.537G>A	c.(535-537)TCG>TCA	p.S179S	DCTN4_uc003lsu.2_Silent_p.S122S|DCTN4_uc010jhi.2_Silent_p.S179S|DCTN4_uc010jhj.2_RNA|DCTN4_uc011dck.1_Silent_p.S122S	NM_016221	NP_057305	Q9UJW0	DCTN4_HUMAN	dynactin 4 (p62) isoform b	179						centrosome|nucleus	protein N-terminus binding			central_nervous_system(1)	1		Medulloblastoma(196;0.167)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AAATTCTCACCGAAAAAGCCA	0.413													12	41					0	0	0.001368	0	0
FAT2	2196	broad.mit.edu	37	5	150887168	150887168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:150887168C>T	uc003lue.3	-	22	12077	c.12064G>A	c.(12064-12066)GAA>AAA	p.E4022K	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Missense_Mutation_p.E629K	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	4022	EGF-like 2.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCCTCCATTTCACACCTGCGG	0.552													7	16					0	0	0.003080	0	0
ITK	3702	broad.mit.edu	37	5	156655358	156655358	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:156655358C>T	uc003lwo.1	+	7	782	c.700C>T	c.(700-702)CTG>TTG	p.L234L		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	234					cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCCAAATAATCTGGAAACCTA	0.294			T	SYK	peripheral T-cell lymphoma								61	262					0	0	0.003610	0	0
PWWP2A	114825	broad.mit.edu	37	5	159520234	159520234	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:159520234G>A	uc011ded.1	-	2	1480	c.1423C>T	c.(1423-1425)CGT>TGT	p.R475C	PWWP2A_uc003lxv.3_Missense_Mutation_p.R475C|PWWP2A_uc011dec.1_Missense_Mutation_p.R475C	NM_001130864	NP_001124336	Q96N64	PWP2A_HUMAN	PWWP domain containing 2A isoform b	475											0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGTTTTAAACGAACCCGGGGT	0.458													6	39					0	0	0.004482	0	0
ATP10B	23120	broad.mit.edu	37	5	160025933	160025933	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:160025933G>A	uc003lym.1	-	22	4255	c.3408C>T	c.(3406-3408)TTC>TTT	p.F1136F	ATP10B_uc010jit.1_Intron	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	1136	Extracellular (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity	p.F1136I(1)		ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGGAGCTGGAGAAACCACAGA	0.498													14	60					0	0	0.001855	0	0
DOCK2	1794	broad.mit.edu	37	5	169122807	169122807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:169122807G>A	uc003maf.2	+	10	924	c.844G>A	c.(844-846)GAT>AAT	p.D282N	DOCK2_uc011der.1_RNA	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	282					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTCCCCCCAGGATCTTGGAAA	0.393													12	70					0	0	0.001855	0	0
DOCK2	1794	broad.mit.edu	37	5	169504715	169504715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:169504715C>T	uc003maf.2	+	48	4948	c.4868C>T	c.(4867-4869)CCT>CTT	p.P1623L	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.P1115L|DOCK2_uc003mah.2_Missense_Mutation_p.P179L	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1623					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCACCACAGCCTGACTTTGAC	0.572													16	63					0	0	0.004990	0	0
CDHR2	54825	broad.mit.edu	37	5	176022617	176022617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:176022617G>A	uc003mem.1	+	32	3943	c.3877G>A	c.(3877-3879)GGA>AGA	p.G1293R	CDHR2_uc003men.1_Missense_Mutation_p.G1293R	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	1293	Cytoplasmic (Potential).				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						AGGCGCAAGTGGACAGCTGGA	0.652													31	112					0	0	0.002445	0	0
UNC5A	90249	broad.mit.edu	37	5	176301447	176301447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:176301447G>A	uc003mey.2	+	8	1450	c.1258G>A	c.(1258-1260)GAG>AAG	p.E420K	UNC5A_uc010jkg.1_Missense_Mutation_p.E380K	NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	420	Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTCTGAGGCCGAGGAGTTCGT	0.662													30	105					0	0	0.002836	0	0
ZNF454	285676	broad.mit.edu	37	5	178392621	178392621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:178392621C>T	uc003mjo.1	+	5	1487	c.1216C>T	c.(1216-1218)CAC>TAC	p.H406Y	ZNF454_uc010jkz.1_Missense_Mutation_p.H406Y	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	406	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		TCGGAAAATTCACACTGGAGA	0.418													8	40					0	0	0.006214	0	0
OR2Y1	134083	broad.mit.edu	37	5	180166981	180166981	+	Silent	SNP	G	A	A	rs146483228		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr5:180166981G>A	uc003mmf.1	-	1	78	c.78C>T	c.(76-78)ATC>ATT	p.I26I		NM_001001657	NP_001001657	Q8NGV0	OR2Y1_HUMAN	olfactory receptor, family 2, subfamily Y,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(89;1.25e-05)|all_epithelial(37;4.36e-06)|Renal(175;0.000159)|Lung NSC(126;0.00317)|all_lung(126;0.0041)|Breast(19;0.114)	all_cancers(40;0.0834)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGACAAACAGGATGGGCTCCA	0.468													8	22					0	0	0.004482	0	0
F13A1	2162	broad.mit.edu	37	6	6225016	6225016	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:6225016G>A	uc003mwv.2	-	7	999	c.876C>T	c.(874-876)GCC>GCT	p.A292A	F13A1_uc011dib.1_Silent_p.A229A	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	292					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	TTCCAGTCCAGGCCGATGGGG	0.498													19	72					0	0	0.007413	0	0
F13A1	2162	broad.mit.edu	37	6	6225075	6225075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:6225075C>T	uc003mwv.2	-	7	940	c.817G>A	c.(817-819)GAA>AAA	p.E273K	F13A1_uc011dib.1_Missense_Mutation_p.E210K	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	273					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	AGGACACCTTCGTCATCTTTG	0.498													12	56					0	0	0.001368	0	0
MRS2	57380	broad.mit.edu	37	6	24423265	24423265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:24423265C>T	uc003neb.2	+	10	1330	c.1208C>T	c.(1207-1209)CCA>CTA	p.P403L	MRS2_uc003nea.2_Missense_Mutation_p.P403L|MRS2_uc011djl.1_Missense_Mutation_p.P406L|MRS2_uc011djm.1_RNA|MRS2_uc011djn.1_Missense_Mutation_p.P353L|MRS2_uc003nec.2_Missense_Mutation_p.P280L	NM_020662	NP_065713	Q9HD23	MRS2_HUMAN	MRS2-like, magnesium homeostasis factor	403	Mitochondrial matrix (Potential).				ion transport	integral to membrane|mitochondrial inner membrane					0						CTAGAAGCTCCATTGCCTCCT	0.318													14	109					0	0	0.003163	0	0
HIST1H2AA	221613	broad.mit.edu	37	6	25726650	25726650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:25726650G>A	uc003nfc.2	-	1	141	c.106C>T	c.(106-108)CGT>TGT	p.R36C	HIST1H2BA_uc003nfd.2_5'Flank	NM_170745	NP_734466	Q96QV6	H2A1A_HUMAN	histone cluster 1, H2aa	36					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TTTCCCTTACGAAGCAGACGA	0.552													5	48					0	0	0.001168	0	0
BTN1A1	696	broad.mit.edu	37	6	26506930	26506930	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:26506930G>A	uc003nif.3	+	4	749	c.729G>A	c.(727-729)CTG>CTA	p.L243L		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	243	Helical; (Potential).					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						TCCCAAGGCTGACTCCCTGGA	0.463													34	221					0	0	0.005524	0	0
ZNF165	7718	broad.mit.edu	37	6	28056379	28056379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:28056379G>A	uc003nkg.2	+	5	1673	c.589G>A	c.(589-591)GAA>AAA	p.E197K	ZNF165_uc003nkh.2_Missense_Mutation_p.E197K|ZNF165_uc003nki.3_Missense_Mutation_p.E197K|ZSCAN12P1_uc003nkj.3_5'Flank	NM_003447	NP_003438	P49910	ZN165_HUMAN	zinc finger protein 165	197					viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GCCAAAGCTGGAAATTTTTGA	0.333													11	72					0	0	0.000978	0	0
PGBD1	84547	broad.mit.edu	37	6	28269287	28269287	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:28269287C>T	uc003nky.2	+	7	2026	c.1656C>T	c.(1654-1656)TGC>TGT	p.C552C	PGBD1_uc003nkz.2_Silent_p.C552C	NM_032507	NP_115896	Q96JS3	PGBD1_HUMAN	piggyBac transposable element derived 1	552					viral reproduction	membrane|nucleus	scavenger receptor activity|sequence-specific DNA binding transcription factor activity			ovary(4)	4						TGTGTGAATGCTTTGATAGTG	0.363													21	60					0	0	0.001882	0	0
SCAND3	114821	broad.mit.edu	37	6	28554392	28554392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:28554392C>T	uc003nlo.2	-	1	721	c.103G>A	c.(103-105)GAT>AAT	p.D35N	uc003nlp.1_5'Flank	NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	35					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GATTCCTGATCCCAAGTGTGG	0.517													15	53					0	0	0.002450	0	0
DHX16	8449	broad.mit.edu	37	6	30632959	30632959	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:30632959G>A	uc003nqz.2	-	6	1226	c.1014C>T	c.(1012-1014)TCC>TCT	p.S338S	DHX16_uc011dmo.1_Silent_p.S278S	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	338					mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						CAAACTTCAGGGACGCTGCCC	0.642													4	28					0	0	0.000602	0	0
DPCR1	135656	broad.mit.edu	37	6	30920880	30920880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:30920880C>T	uc003nsg.2	+	3	4168	c.4168C>T	c.(4168-4170)CCT>TCT	p.P1390S		NM_080870	NP_543146	Q3MIW9	DPCR1_HUMAN	diffuse panbronchiolitis critical region 1	514	Cytoplasmic (Potential).					integral to membrane					0						GGGCCAGATCCCTTCCCCACG	0.567													7	30					0	0	0.003080	0	0
MUC21	394263	broad.mit.edu	37	6	30955083	30955083	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:30955083C>T	uc003nsh.2	+	2	1382	c.1131C>T	c.(1129-1131)AAC>AAT	p.N377N	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	377	Ser-rich.|24.|28 X 15 AA approximate tandem repeats.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|skin(1)	2						CAGCCACCAACTCTGAGTCCA	0.632													17	119					0	0	0.006122	0	0
LTA	4049	broad.mit.edu	37	6	31541416	31541416	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:31541416C>T	uc011dnu.1	+	4	777	c.564C>T	c.(562-564)ATC>ATT	p.I188I	LTA_uc003nue.1_Silent_p.I188I|LTA_uc003nuf.2_Intron|LTA_uc003nuh.2_Intron|LTA_uc003nug.2_Missense_Mutation_p.P98S|LTA_uc010jsr.2_RNA|TNF_uc003nui.2_5'Flank|TNF_uc003nuj.2_5'Flank	NM_001159740	NP_001153212	P01374	TNFB_HUMAN	lymphotoxin alpha precursor	188					cell-cell signaling|induction of apoptosis|signal transduction	extracellular space|membrane	cytokine activity|tumor necrosis factor receptor binding				0					Etanercept(DB00005)	CAGATGGCATCCCCCACCTAG	0.517													28	106					0	0	0.004878	0	0
LY6G6C	80740	broad.mit.edu	37	6	31686915	31686915	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:31686915G>A	uc003nwh.2	-	3	390	c.336C>T	c.(334-336)TTC>TTT	p.F112F	LY6G6C_uc010jtd.2_RNA	NM_025261	NP_079537	O95867	LY66C_HUMAN	lymphocyte antigen 6 complex G6C precursor	112						anchored to membrane|plasma membrane					0						AGGAGGTAAGGAAGACAAGGC	0.617													101	431					0	0	0.003610	0	0
VARS	7407	broad.mit.edu	37	6	31753402	31753402	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:31753402G>A	uc003nxe.2	-	9	1632	c.1209C>T	c.(1207-1209)AGC>AGT	p.S403S	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	403					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	GCTGGTGCCGGCTCAGTCCCT	0.622													44	233					0	0	0.003610	0	0
SKIV2L	6499	broad.mit.edu	37	6	31928246	31928246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:31928246C>T	uc003nyn.1	+	5	781	c.392C>T	c.(391-393)TCC>TTC	p.S131F	RDBP_uc003nyk.2_5'Flank|RDBP_uc011dot.1_5'Flank|RDBP_uc003nyl.1_5'Flank|RDBP_uc003nym.1_5'Flank|SKIV2L_uc011dou.1_Intron|SKIV2L_uc011dov.1_Intron	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	131						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						GCTACAACCTCCTTGTCTCTT	0.562													46	373					0	0	0.003610	0	0
COL11A2	1302	broad.mit.edu	37	6	33156203	33156203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:33156203G>A	uc003ocx.1	-	4	770	c.542C>T	c.(541-543)CCA>CTA	p.P181L	COL11A2_uc003ocy.1_Missense_Mutation_p.P181L|COL11A2_uc003ocz.1_Missense_Mutation_p.P181L|COL11A2_uc003oda.2_Missense_Mutation_p.P181L	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	181	TSP N-terminal.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						GTCCAATACTGGACGAGCACT	0.547													21	65					0	0	0.001523	0	0
KCTD20	222658	broad.mit.edu	37	6	36452569	36452569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:36452569G>A	uc003ome.2	+	7	1326	c.935G>A	c.(934-936)CGG>CAG	p.R312Q	KCTD20_uc011dtm.1_Missense_Mutation_p.R167Q|KCTD20_uc011dtn.1_Missense_Mutation_p.R66Q|KCTD20_uc010jwk.2_Missense_Mutation_p.R146Q|KCTD20_uc011dto.1_Missense_Mutation_p.R66Q	NM_173562	NP_775833	Q7Z5Y7	KCD20_HUMAN	potassium channel tetramerisation domain	312						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2						TTAAAGGAACGGGGCCTAAAA	0.348													10	105					0	0	0.006214	0	0
UNC5CL	222643	broad.mit.edu	37	6	41001861	41001861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:41001861C>T	uc003opi.2	-	3	534	c.445G>A	c.(445-447)GAC>AAC	p.D149N	UNC5CL_uc010jxe.1_Missense_Mutation_p.D149N	NM_173561	NP_775832	Q8IV45	UN5CL_HUMAN	unc-5 homolog C-like	149	ZU5.|Cytoplasmic (Potential).				signal transduction	cytoplasm|integral to membrane				ovary(2)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					GATGGGGCGTCCGACAGGTCC	0.652													10	35					0	0	0.006214	0	0
APOBEC2	10930	broad.mit.edu	37	6	41029410	41029410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:41029410G>A	uc003opl.2	+	2	622	c.475G>A	c.(475-477)GAG>AAG	p.E159K	UNC5CL_uc010jxe.1_Intron|APOBEC2_uc010jxf.2_RNA	NM_006789	NP_006780	Q9Y235	ABEC2_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	159					DNA demethylation|mRNA processing		cytidine deaminase activity|RNA binding|zinc ion binding				0	Ovarian(28;0.0418)|Colorectal(47;0.196)					CATGTGGGAGGAGCCGGAGAT	0.537													19	82					0	0	0.008871	0	0
TREML2	79865	broad.mit.edu	37	6	41165887	41165887	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:41165887G>A	uc010jxm.1	-	2	515	c.336C>T	c.(334-336)ATC>ATT	p.I112I		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	112	Ig-like V-type.|Extracellular (Potential).				T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					AGGGGTACAGGATCCCAGAGG	0.622													7	32					0	0	0.001984	0	0
GUCA1B	2979	broad.mit.edu	37	6	42152572	42152572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:42152572C>T	uc003orz.2	-	4	720	c.584G>A	c.(583-585)CGG>CAG	p.R195Q		NM_002098	NP_002089	Q9UMX6	GUC1B_HUMAN	guanylate cyclase activator 1B (retina)	195					body fluid secretion|cell-cell signaling|receptor guanylyl cyclase signaling pathway|visual perception	plasma membrane	calcium ion binding|calcium sensitive guanylate cyclase activator activity			skin(2)	2	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|Epithelial(12;0.00154)|STAD - Stomach adenocarcinoma(11;0.00177)			GGCACTTTTCCGTCTCTGCTG	0.582													12	78					0	0	0.001368	0	0
CUL9	23113	broad.mit.edu	37	6	43155482	43155482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:43155482C>T	uc003ouk.2	+	7	1688	c.1613C>T	c.(1612-1614)TCT>TTT	p.S538F	CUL9_uc003ouj.1_Missense_Mutation_p.S428F|CUL9_uc003oul.2_Missense_Mutation_p.S538F|CUL9_uc010jyk.2_5'UTR|CUL9_uc003oum.1_5'UTR	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	538					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						GGTGAGATCTCTGTGTCCGTG	0.512													21	115					0	0	0.001523	0	0
CUL9	23113	broad.mit.edu	37	6	43164422	43164422	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:43164422C>T	uc003ouk.2	+	11	2700	c.2625C>T	c.(2623-2625)AAC>AAT	p.N875N	CUL9_uc003oul.2_Silent_p.N875N|CUL9_uc010jyk.2_Silent_p.N27N	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	875					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						TCCTGCTCAACCTACTTTTGT	0.502													25	87					0	0	0.003954	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47252044	47252044	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:47252044G>A	uc003oyv.2	-	3	1306	c.873C>T	c.(871-873)ACC>ACT	p.T291T		NM_014452	NP_055267	O75509	TNR21_HUMAN	tumor necrosis factor receptor superfamily,	291	Extracellular (Potential).				cellular lipid metabolic process	cytoplasm|integral to membrane	protein binding|receptor activity				0			Lung(136;0.189)			GGTTTGGGAGGGTCTTGTTCA	0.567													21	160					0	0	0.001882	0	0
TINAG	27283	broad.mit.edu	37	6	54254639	54254639	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:54254639G>A	uc003pcj.2	+	11	1493	c.1347G>A	c.(1345-1347)AGG>AGA	p.R449R	TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	449					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			GCTATTTCAGGATTCTTCGAG	0.388													9	82					0	0	0.008291	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62604713	62604713	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:62604713G>C	uc003peg.2	-	6	884	c.637C>G	c.(637-639)CCC>GCC	p.P213A		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	213	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		GGTGGTGGGGGAGGAGGAATG	0.547													5	53					0	0	0.001168	0	0
FAM135A	57579	broad.mit.edu	37	6	71269565	71269565	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:71269565G>C	uc003pfj.2	+	20	4622	c.4489G>C	c.(4489-4491)GAT>CAT	p.D1497H	FAM135A_uc003pfi.2_Missense_Mutation_p.D1301H|FAM135A_uc003pfh.2_Missense_Mutation_p.D1284H|FAM135A_uc003pfl.2_Missense_Mutation_p.D1164H|FAM135A_uc003pfn.2_Missense_Mutation_p.D703H|FAM135A_uc010kan.1_Missense_Mutation_p.D239H|FAM135A_uc003pfp.2_Missense_Mutation_p.D61H	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	1497										central_nervous_system(1)	1						AGCTGTTCTTGATTCGGAAAT	0.378													8	26					0	0	0.006214	0	0
RIMS1	22999	broad.mit.edu	37	6	73108726	73108726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:73108726G>A	uc003pga.2	+	33	4867	c.4790G>A	c.(4789-4791)CGA>CAA	p.R1597Q	RIMS1_uc011dyb.1_Missense_Mutation_p.R994Q|RIMS1_uc003pgc.2_Missense_Mutation_p.R1012Q|RIMS1_uc010kaq.2_Missense_Mutation_p.R917Q|RIMS1_uc011dyc.1_Missense_Mutation_p.R722Q|RIMS1_uc010kar.2_Missense_Mutation_p.R665Q|RIMS1_uc011dyd.1_Missense_Mutation_p.R731Q|RIMS1_uc003pgf.2_Missense_Mutation_p.R597Q|RIMS1_uc003pgg.2_Missense_Mutation_p.R493Q|RIMS1_uc003pgi.2_Missense_Mutation_p.R413Q|RIMS1_uc003pgh.2_Missense_Mutation_p.R464Q|RIMS1_uc003pgd.2_Missense_Mutation_p.R663Q|RIMS1_uc003pge.2_Missense_Mutation_p.R637Q|RIMS1_uc011dye.1_Missense_Mutation_p.R403Q|RIMS1_uc011dyf.1_Missense_Mutation_p.R221Q|RIMS1_uc011dyg.1_Missense_Mutation_p.R124Q	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1597	C2 2.				calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding	p.R1597Q(1)		ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				AGAATTGCACGAAAAACCCTT	0.353													13	30					0	0	0.001855	0	0
COL12A1	1303	broad.mit.edu	37	6	75890817	75890817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:75890817C>T	uc003phs.2	-	11	2168	c.2002G>A	c.(2002-2004)GAA>AAA	p.E668K	COL12A1_uc003pht.2_Intron|COL12A1_uc003phu.1_Missense_Mutation_p.E326K	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	668	Fibronectin type-III 3.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						CCAGCCGCTTCCTTGTAGGTG	0.458													13	49					0	0	0.001368	0	0
IMPG1	3617	broad.mit.edu	37	6	76657183	76657183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:76657183C>T	uc003pik.1	-	14	2022	c.1892G>A	c.(1891-1893)GGG>GAG	p.G631E		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	631	SEA 2.				visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				AATCACACTCCCGTTTCTGAA	0.413													3	21					0	0	0.004672	0	0
MRAP2	112609	broad.mit.edu	37	6	84798852	84798852	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:84798852T>G	uc003pkg.3	+	4	460	c.270T>G	c.(268-270)TTT>TTG	p.F90L	MRAP2_uc010kbo.2_Missense_Mutation_p.F4L	NM_138409	NP_612418	Q96G30	MRAP2_HUMAN	melanocortin 2 receptor accessory protein 2	90					positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding			skin(2)	2						TGAACAGCTTTGTGTCAGACT	0.433													6	46					0	0	0.003080	0	0
HTR1E	3354	broad.mit.edu	37	6	87725844	87725844	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:87725844G>A	uc003pli.2	+	2	1495	c.792G>A	c.(790-792)AGG>AGA	p.R264R		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	264	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	CCTCCATCAGGATCCCCCCCT	0.502													12	112					0	0	0.001368	0	0
MDN1	23195	broad.mit.edu	37	6	90421914	90421914	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:90421914G>A	uc003pnn.1	-	49	7608	c.7492C>T	c.(7492-7494)CTG>TTG	p.L2498L		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	2498					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TTGAATTTCAGGTTCTCAGGG	0.398													31	107					0	0	0.003755	0	0
BACH2	60468	broad.mit.edu	37	6	90718397	90718397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:90718397G>A	uc011eab.1	-	6	976	c.167C>T	c.(166-168)GCC>GTC	p.A56V	BACH2_uc003pnw.2_Missense_Mutation_p.A56V|BACH2_uc010kch.2_Missense_Mutation_p.A56V	NM_021813	NP_068585	Q9BYV9	BACH2_HUMAN	BTB and CNC homology 1, basic leucine zipper	56	BTB.					nucleus	protein dimerization activity|sequence-specific DNA binding			ovary(3)|pancreas(1)|lung(1)|skin(1)	6		all_cancers(76;7.37e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.0063)		BRCA - Breast invasive adenocarcinoma(108;0.0799)		ACTGCATGCGGCCAGCACAGC	0.512													12	78					0	0	0.001368	0	0
EPHA7	2045	broad.mit.edu	37	6	93956528	93956528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:93956528G>A	uc003poe.2	-	15	2949	c.2708C>T	c.(2707-2709)CCC>CTC	p.P903L	EPHA7_uc003pof.2_Missense_Mutation_p.P898L|EPHA7_uc011eac.1_Missense_Mutation_p.P899L	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	903	Cytoplasmic (Potential).		P -> S (in a metastatic melanoma sample; somatic mutation).			integral to plasma membrane	ATP binding|ephrin receptor activity	p.P903S(1)		lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		AGTTCCCAGGGGAGTTTTCAG	0.398													17	61					0	0	0.008871	0	0
FUT9	10690	broad.mit.edu	37	6	96651190	96651190	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:96651190C>T	uc003pop.3	+	3	500	c.159C>T	c.(157-159)TTC>TTT	p.F53F		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	53	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		TGAAAAACTTCTTTTCCACCA	0.418													10	54					0	0	0.008291	0	0
KLHL32	114792	broad.mit.edu	37	6	97561827	97561827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:97561827G>A	uc010kcm.1	+	7	1268	c.796G>A	c.(796-798)GAA>AAA	p.E266K	KLHL32_uc003poy.2_Missense_Mutation_p.E266K|KLHL32_uc011ead.1_Missense_Mutation_p.E230K|KLHL32_uc003poz.2_Intron|KLHL32_uc011eae.1_Missense_Mutation_p.E197K|KLHL32_uc003ppa.2_Intron	NM_052904	NP_443136	Q96NJ5	KLH32_HUMAN	kelch-like 32	266										ovary(3)|skin(1)	4		all_cancers(76;1.19e-06)|Acute lymphoblastic leukemia(125;5.83e-10)|all_hematologic(75;3.67e-07)|all_epithelial(107;0.00778)|Colorectal(196;0.122)		BRCA - Breast invasive adenocarcinoma(108;0.0558)		CGAGGCCCTGGAATACCACCA	0.527													9	45					0	0	0.004482	0	0
AIM1	202	broad.mit.edu	37	6	106968334	106968334	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:106968334C>T	uc003prh.2	+	2	2514	c.2027C>T	c.(2026-2028)CCT>CTT	p.P676L		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	676							sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		CAGGATAGCCCTGCCAGCCTT	0.438													5	48					0	0	0.000602	0	0
SLC22A16	85413	broad.mit.edu	37	6	110757128	110757128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:110757128C>T	uc003puf.2	-	6	1415	c.1348G>A	c.(1348-1350)GGA>AGA	p.G450R	SLC22A16_uc003pue.2_Missense_Mutation_p.G431R	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	450	Helical; (Potential).				acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		GCAAATTTTCCAACCATAGCT	0.348													11	37					0	0	0.000978	0	0
RFX6	222546	broad.mit.edu	37	6	117240361	117240361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:117240361G>A	uc003pxm.2	+	11	1147	c.1084G>A	c.(1084-1086)GAA>AAA	p.E362K		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	362					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						TTCATCCTTGGAAAACTTGCC	0.358													10	36					0	0	0.006214	0	0
PDE7B	27115	broad.mit.edu	37	6	136470276	136470276	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:136470276C>T	uc003qgp.2	+	5	673	c.370C>T	c.(370-372)CGC>TGC	p.R124C	uc003qgq.1_Intron|PDE7B_uc003qgr.2_Missense_Mutation_p.R176C	NM_018945	NP_061818	Q9NP56	PDE7B_HUMAN	phosphodiesterase 7B	124					signal transduction|synaptic transmission	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(1)	1	Colorectal(23;0.24)			OV - Ovarian serous cystadenocarcinoma(155;0.0136)|GBM - Glioblastoma multiforme(68;0.0147)	Dyphylline(DB00651)|Ketotifen(DB00920)	CTTGTTTGATCGCTTGACAAA	0.338													9	35					0	0	0.006214	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599645	136599645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:136599645G>A	uc003qgx.1	-	4	627	c.374C>T	c.(373-375)TCC>TTC	p.S125F	BCLAF1_uc003qgw.1_Missense_Mutation_p.S125F|BCLAF1_uc003qgy.1_Missense_Mutation_p.S123F|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.S123F	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	125					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TCTGCTTCTGGATCTTTGAGA	0.448													23	199					0	0	0.003330	0	0
REPS1	85021	broad.mit.edu	37	6	139262517	139262517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:139262517G>A	uc003qii.2	-	8	1669	c.1090C>T	c.(1090-1092)CCT>TCT	p.P364S	REPS1_uc003qig.3_Missense_Mutation_p.P364S|REPS1_uc011edr.1_Missense_Mutation_p.P364S|REPS1_uc003qij.2_Missense_Mutation_p.P364S|REPS1_uc003qik.2_5'UTR	NM_031922	NP_114128	Q96D71	REPS1_HUMAN	RALBP1 associated Eps domain containing 1	364	EH 2.					coated pit|plasma membrane	calcium ion binding|SH3 domain binding			lung(1)|breast(1)	2				GBM - Glioblastoma multiforme(68;0.000434)|OV - Ovarian serous cystadenocarcinoma(155;0.000548)		AAGCTTTCAGGAAGTTTTTCT	0.403													12	95					0	0	0.000978	0	0
HIVEP2	3097	broad.mit.edu	37	6	143093185	143093185	+	Silent	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:143093185A>G	uc003qjd.2	-	5	3434	c.2691T>C	c.(2689-2691)CCT>CCC	p.P897P		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	897					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		CAGGTTTATCAGGCTCCTCGG	0.547													3	66					0	0	0.004672	0	0
UTRN	7402	broad.mit.edu	37	6	144844169	144844170	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:144844169_144844170GG>AA	uc003qkt.2	+	40	5843_5844	c.5751_5752GG>AA	c.(5749-5754)CTGGAC>CTAAAC	p.D1918N		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	1918	Spectrin 13.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		AAGACCAACTGGACAAACTTGG	0.356													8	30					0	0	0.004672	0	0
C6orf97	80129	broad.mit.edu	37	6	151939132	151939132	+	Silent	SNP	C	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:151939132C>A	uc003qol.2	+	11	2087	c.1998C>A	c.(1996-1998)ACC>ACA	p.T666T		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	666											0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		TGAACGTGACCAGCCTTGCTC	0.443													7	73					0.000274275	0.000307881	0.004482	1	0
SYNE1	23345	broad.mit.edu	37	6	152552588	152552588	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:152552588C>A	uc010kiw.2	-	114	21579	c.20977G>T	c.(20977-20979)GCT>TCT	p.A6993S	SYNE1_uc010kiv.2_Missense_Mutation_p.A1517S|SYNE1_uc003qos.3_Missense_Mutation_p.A1517S|SYNE1_uc003qot.3_Missense_Mutation_p.A6922S|SYNE1_uc003qou.3_Missense_Mutation_p.A6993S	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6993	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		AGTTGCTCAGCAAAATCAGTC	0.423										HNSCC(10;0.0054)			9	49					3.09899e-07	3.50179e-07	0.004482	1	0
IGF2R	3482	broad.mit.edu	37	6	160525776	160525776	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:160525776C>T	uc003qta.2	+	48	7284	c.7136C>T	c.(7135-7137)CCA>CTA	p.P2379L		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	2379	Cytoplasmic (Potential).				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		CTGCCTCCTCCACGGCAGGGA	0.542													14	43					0	0	0.002450	0	0
AGPAT4	56895	broad.mit.edu	37	6	161560492	161560492	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:161560492G>A	uc003qtr.1	-	8	1231	c.1004C>T	c.(1003-1005)TCC>TTC	p.S335F	AGPAT4_uc003qts.1_Missense_Mutation_p.S195F|AGPAT4_uc011egb.1_Missense_Mutation_p.S173F	NM_020133	NP_064518	Q9NRZ5	PLCD_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 4	335					phospholipid biosynthetic process	integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity|protein binding				0		Breast(66;0.000289)|Ovarian(120;0.0266)|Prostate(117;0.0285)		OV - Ovarian serous cystadenocarcinoma(65;2.23e-17)|BRCA - Breast invasive adenocarcinoma(81;3.58e-05)		CAGCGTCAGGGAAGACCCGCT	0.627													10	112					0	0	0.000978	0	0
GPR31	2853	broad.mit.edu	37	6	167571113	167571113	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:167571113G>A	uc011egq.1	-	1	207	c.207C>T	c.(205-207)TTC>TTT	p.F69F		NM_005299	NP_005290	O00270	GPR31_HUMAN	G protein-coupled receptor 31	69	Helical; Name=2; (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0		Breast(66;1.53e-05)|Ovarian(120;0.0606)		OV - Ovarian serous cystadenocarcinoma(33;4.81e-20)|BRCA - Breast invasive adenocarcinoma(81;4.45e-06)|GBM - Glioblastoma multiforme(31;0.00492)		AGGCGGCCAGGAAAGGCAGGC	0.657													4	30					0	0	0.000602	0	0
RNF216	54476	broad.mit.edu	37	7	5680976	5680976	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:5680976T>A	uc003soy.1	-	15	2210	c.2020A>T	c.(2020-2022)AAA>TAA	p.K674*	RNF216_uc010ksz.1_Nonsense_Mutation_p.K296*|RNF216_uc010kta.1_Nonsense_Mutation_p.K296*|RNF216_uc011jwj.1_Nonsense_Mutation_p.K296*|RNF216_uc003sox.1_Nonsense_Mutation_p.K731*	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	674					apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		TTGTGGCATTTTCTAATGCGG	0.458													7	40					0	0	0.003080	0	0
PMS2	5395	broad.mit.edu	37	7	6042238	6042238	+	Missense_Mutation	SNP	G	A	A	rs116373169	byFrequency	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:6042238G>A	uc003spl.2	-	5	470	c.383C>T	c.(382-384)TCG>TTG	p.S128L	PMS2_uc003spj.2_Missense_Mutation_p.S22L|PMS2_uc003spk.2_5'UTR|PMS2_uc011jwl.1_5'UTR|PMS2_uc010ktg.2_5'UTR|PMS2_uc010kte.2_Missense_Mutation_p.S128L|PMS2_uc010ktf.1_Missense_Mutation_p.S128L	NM_000535	NP_000526	P54278	PMS2_HUMAN	PMS2 postmeiotic segregation increased 2 isoform	128					mismatch repair|reciprocal meiotic recombination|somatic hypermutation of immunoglobulin genes	MutLalpha complex	ATP binding|ATPase activity|endonuclease activity|protein binding|single base insertion or deletion binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;4.39e-15)		AACCTTCGCCGATGCGTGGCA	0.522			Mis|N|F			colorectal|endometrial|ovarian|medulloblastoma|glioma		Direct_reversal_of_damage|MMR	Lynch_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				21	98					0	0	0.004656	0	0
HDAC9	9734	broad.mit.edu	37	7	18688140	18688140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:18688140C>T	uc003suh.2	+	10	1333	c.1292C>T	c.(1291-1293)TCA>TTA	p.S431L	HDAC9_uc003sue.2_Missense_Mutation_p.S431L|HDAC9_uc011jyd.1_Missense_Mutation_p.S431L|HDAC9_uc003sui.2_Missense_Mutation_p.S434L|HDAC9_uc003suj.2_Missense_Mutation_p.S390L|HDAC9_uc011jya.1_Missense_Mutation_p.S428L|HDAC9_uc003sua.1_Missense_Mutation_p.S409L|HDAC9_uc011jyb.1_Missense_Mutation_p.S387L|HDAC9_uc003sud.1_Missense_Mutation_p.S431L|HDAC9_uc011jyc.1_Missense_Mutation_p.S390L|HDAC9_uc003suf.1_Missense_Mutation_p.S462L|HDAC9_uc010kud.1_Missense_Mutation_p.S434L|HDAC9_uc011jye.1_Missense_Mutation_p.S403L|HDAC9_uc011jyf.1_Missense_Mutation_p.S354L|HDAC9_uc010kue.1_Missense_Mutation_p.S174L	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	431					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	GAGAGAATTTCACCTGGCATT	0.433													14	54					0	0	0.003163	0	0
ITGB8	3696	broad.mit.edu	37	7	20418903	20418903	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:20418903G>A	uc003suu.2	+	4	1323	c.618G>A	c.(616-618)AGG>AGA	p.R206R	ITGB8_uc011jyh.1_Silent_p.R71R|ITGB8_uc003sut.2_Silent_p.R206R	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	206	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						ACCCCGAAAGGATTCATAATC	0.338													7	23					0	0	0.006214	0	0
PDE1C	5137	broad.mit.edu	37	7	31918645	31918645	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:31918645A>G	uc003tcm.1	-	4	858	c.389T>C	c.(388-390)ATC>ACC	p.I130T	PDE1C_uc003tcn.1_Missense_Mutation_p.I130T|PDE1C_uc003tco.1_Missense_Mutation_p.I190T|PDE1C_uc003tcr.2_Missense_Mutation_p.I130T|PDE1C_uc003tcs.2_Missense_Mutation_p.I130T	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	130					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TGCGTGAACGATGCTCTTGAA	0.527													24	104					0	0	0.003954	0	0
BMPER	168667	broad.mit.edu	37	7	34118710	34118710	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:34118710G>A	uc011kap.1	+	12	1434	c.1320G>A	c.(1318-1320)TGG>TGA	p.W440*		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	440	VWFD.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						CCGTGCGCTGGAACGGCTCGC	0.667													18	62					0	0	0.001882	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35131475	35131475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:35131475C>T	uc003teq.1	-	20	2218	c.1111G>A	c.(1111-1113)GAA>AAA	p.E371K	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						TCTGCATCTTCGTAAAGTGGA	0.403													16	67					0	0	0.004990	0	0
TXNDC3	51314	broad.mit.edu	37	7	37927934	37927934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:37927934G>A	uc003tfn.2	+	15	1675	c.1303G>A	c.(1303-1305)GAT>AAT	p.D435N		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	435	NDK 2.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						GTATGGCAGCGATTCATTAGA	0.393									Kartagener_syndrome				11	37					0	0	0.001855	0	0
GLI3	2737	broad.mit.edu	37	7	42004227	42004227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:42004227G>A	uc011kbh.1	-	15	4535	c.4444C>T	c.(4444-4446)CCA>TCA	p.P1482S	GLI3_uc011kbg.1_Missense_Mutation_p.P1423S	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1482					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						TTAGCACCTGGGGAAAGTAAC	0.532									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				19	44					0	0	0.002299	0	0
NPC1L1	29881	broad.mit.edu	37	7	44578788	44578788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:44578788G>A	uc003tlb.2	-	2	1264	c.1208C>T	c.(1207-1209)CCC>CTC	p.P403L	NPC1L1_uc003tlc.2_Missense_Mutation_p.P403L|NPC1L1_uc011kbw.1_Missense_Mutation_p.P403L|NPC1L1_uc003tld.2_Missense_Mutation_p.P403L	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	403	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	TCGGAAGAAGGGGCCGAAATG	0.582													19	121					0	0	0.001523	0	0
ABCA13	154664	broad.mit.edu	37	7	48411914	48411914	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:48411914C>T	uc003toq.2	+	33	10978	c.10953C>T	c.(10951-10953)TTC>TTT	p.F3651F	ABCA13_uc010kys.1_Silent_p.F725F|ABCA13_uc003tos.1_Silent_p.F477F	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3651	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TTATTGTTTTCCTCTTTCTCT	0.468													30	133					0	0	0.002836	0	0
ABCA13	154664	broad.mit.edu	37	7	48550793	48550793	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:48550793C>T	uc003toq.2	+	51	13663	c.13638C>T	c.(13636-13638)TTC>TTT	p.F4546F	ABCA13_uc010kys.1_Silent_p.F1621F|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Silent_p.F276F	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4546	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TGTCACTTTTCGGGTATGTGA	0.483													9	45					0	0	0.004482	0	0
CLDN4	1364	broad.mit.edu	37	7	73245833	73245833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:73245833G>A	uc003tzi.3	+	1	641	c.302G>A	c.(301-303)GGG>GAG	p.G101E	RFC2_uc011kfa.1_Intron|CLDN4_uc003tzh.1_RNA	NM_001305	NP_001296	O14493	CLD4_HUMAN	claudin 4	101	Helical; (Potential).				calcium-independent cell-cell adhesion	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity|transmembrane receptor activity				0		Lung NSC(55;0.159)				TCCGTGGTGGGGGGCAAGTGT	0.642													14	48					0	0	0.001855	0	0
GTF2IRD2	84163	broad.mit.edu	37	7	74211432	74211432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:74211432G>A	uc003ubd.1	-	16	2603	c.2419C>T	c.(2419-2421)CCC>TCC	p.P807S	GTF2IRD2_uc010lbt.1_Missense_Mutation_p.P354S	NM_173537	NP_775808	Q86UP8	GTD2A_HUMAN	GTF2I repeat domain containing 2	807					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ttcagggtgggaaagtgggcc	0													37	132					0	0	0.007835	0	0
PHTF2	57157	broad.mit.edu	37	7	77549657	77549657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:77549657C>T	uc003ugs.3	+	9	964	c.838C>T	c.(838-840)CTT>TTT	p.L280F	PHTF2_uc003ugo.3_Missense_Mutation_p.L242F|PHTF2_uc003ugp.2_Missense_Mutation_p.L242F|PHTF2_uc003ugq.3_Missense_Mutation_p.L242F|PHTF2_uc010ldv.2_Missense_Mutation_p.L242F|PHTF2_uc003ugr.3_Missense_Mutation_p.L246F|PHTF2_uc003ugt.3_Missense_Mutation_p.L246F|PHTF2_uc003ugu.3_Missense_Mutation_p.L242F|PHTF2_uc003ugv.2_Missense_Mutation_p.L105F|PHTF2_uc010ldw.1_Missense_Mutation_p.L105F	NM_001127357	NP_001120829	Q8N3S3	PHTF2_HUMAN	putative homeodomain transcription factor 2	280					regulation of transcription, DNA-dependent|transcription, DNA-dependent	endoplasmic reticulum|nucleus	DNA binding			ovary(1)	1						CTATGTATCCCTTGATGGGAA	0.373													5	30					0	0	0.001984	0	0
PCLO	27445	broad.mit.edu	37	7	82582184	82582184	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:82582184G>A	uc003uhx.2	-	5	8374	c.8085C>T	c.(8083-8085)TCC>TCT	p.S2695S	PCLO_uc003uhv.2_Silent_p.S2695S|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2626					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GAATTGTTATGGAAATGCTGC	0.413													12	50					0	0	0.000978	0	0
PCLO	27445	broad.mit.edu	37	7	82583827	82583827	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:82583827C>T	uc003uhx.2	-	5	6731	c.6442G>A	c.(6442-6444)GAT>AAT	p.D2148N	PCLO_uc003uhv.2_Missense_Mutation_p.D2148N	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2079					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTTGTATAATCGGTTACATAT	0.408													5	53					0	0	0.001168	0	0
PCLO	27445	broad.mit.edu	37	7	82585599	82585599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:82585599C>T	uc003uhx.2	-	5	4959	c.4670G>A	c.(4669-4671)CGA>CAA	p.R1557Q	PCLO_uc003uhv.2_Missense_Mutation_p.R1557Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1488					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GATTTGTTTTCGAATGAAGTC	0.418													14	72					0	0	0.004990	0	0
SEMA3D	223117	broad.mit.edu	37	7	84702398	84702398	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:84702398C>T	uc003uic.2	-	4	416	c.376_splice	c.e4-1	p.T126_splice	SEMA3D_uc010led.2_Splice_Site_p.T126_splice|SEMA3D_uc010lee.1_Splice_Site_p.T126_splice	NM_152754	NP_689967	O95025	SEM3D_HUMAN	semaphorin 3D precursor						cell differentiation|nervous system development	extracellular region|membrane	receptor activity			ovary(3)|large_intestine(2)	5						CACATTCTGTCTGTTGGGCAC	0.333													8	29					0	0	0.004482	0	0
GRM3	2913	broad.mit.edu	37	7	86468214	86468214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:86468214G>A	uc003uid.2	+	4	2483	c.1384G>A	c.(1384-1386)GGA>AGA	p.G462R	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.G334R|GRM3_uc010leh.2_Missense_Mutation_p.G54R	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	462	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TTTTGGAGATGGAATGGGGCG	0.378													9	27					0	0	0.004482	0	0
GRM3	2913	broad.mit.edu	37	7	86493639	86493639	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:86493639G>A	uc003uid.2	+	6	3707	c.2608G>A	c.(2608-2610)GAA>AAA	p.E870K	GRM3_uc010lef.2_Missense_Mutation_p.G512E|GRM3_uc010leg.2_Missense_Mutation_p.E742K|GRM3_uc010leh.2_Missense_Mutation_p.E462K	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	870	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CAATGGGCGGGAAGTCCTCGA	0.438													20	95					0	0	0.004656	0	0
DMTF1	9988	broad.mit.edu	37	7	86794346	86794346	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:86794346T>C	uc003uih.2	+	3	415	c.89T>C	c.(88-90)ATT>ACT	p.I30T	DMTF1_uc003uii.2_5'UTR|DMTF1_uc003uij.2_5'UTR|DMTF1_uc011khb.1_Intron|DMTF1_uc003uik.2_RNA|DMTF1_uc003uil.2_Missense_Mutation_p.I30T|DMTF1_uc003uim.1_Missense_Mutation_p.I30T|DMTF1_uc003uin.2_5'UTR	NM_001142327	NP_001135799	Q9Y222	DMTF1_HUMAN	cyclin D binding myb-like transcription factor 1	30	Interaction with CCND2 (By similarity).				cell cycle	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(14;0.0058)					GGGAATCTCATTCTTCACTGC	0.413													9	28					0	0	0.004482	0	0
RUNDC3B	154661	broad.mit.edu	37	7	87280199	87280199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:87280199G>A	uc003ujb.2	+	2	595	c.184G>A	c.(184-186)GAA>AAA	p.E62K	ABCB1_uc003uiz.1_Intron|ABCB1_uc003uja.1_Intron|ABCB1_uc010lei.1_Intron|RUNDC3B_uc011khd.1_Missense_Mutation_p.E62K|RUNDC3B_uc011khe.1_Missense_Mutation_p.E62K|RUNDC3B_uc003ujc.2_Missense_Mutation_p.E62K	NM_138290	NP_612147	Q96NL0	RUN3B_HUMAN	RUN domain containing 3B isoform a	62	RUN.									skin(1)	1	Esophageal squamous(14;0.00164)					TTCTTCTCCTGAATTTAACAA	0.353													8	33					0	0	0.006214	0	0
AKAP9	10142	broad.mit.edu	37	7	91691662	91691662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:91691662C>T	uc003ulg.2	+	24	6064	c.5839C>T	c.(5839-5841)CGT>TGT	p.R1947C	AKAP9_uc003ulf.2_Missense_Mutation_p.R1947C|AKAP9_uc003uli.2_Missense_Mutation_p.R1570C	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1959	Potential.|Glu-rich.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TATAATAGATCGTCTTGAGCA	0.358			T	BRAF	papillary thyroid								26	116					0	0	0.006320	0	0
SAMD9	54809	broad.mit.edu	37	7	92731372	92731372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:92731372G>A	uc003umf.2	-	3	4295	c.4039C>T	c.(4039-4041)CTC>TTC	p.L1347F	SAMD9_uc003umg.2_Missense_Mutation_p.L1347F	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1347						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TATTCCAAGAGCCCAGAAAAC	0.368													19	108					0	0	0.006122	0	0
NPTX2	4885	broad.mit.edu	37	7	98254422	98254422	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:98254422G>A	uc003upl.2	+	3	1009	c.832G>A	c.(832-834)GAG>AAG	p.E278K		NM_002523	NP_002514	P47972	NPTX2_HUMAN	neuronal pentraxin II precursor	278	Pentaxin.				synaptic transmission	extracellular region	metal ion binding|sugar binding			central_nervous_system(2)|skin(1)	3	all_cancers(62;2.28e-09)|all_epithelial(64;4.86e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0128)|all_lung(186;0.0142)		STAD - Stomach adenocarcinoma(171;0.215)			GCAGGCCAACGAGATCGTGCT	0.637													15	60					0	0	0.006122	0	0
FBXO24	26261	broad.mit.edu	37	7	100187601	100187601	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:100187601T>G	uc003uvm.1	+	2	334	c.41T>G	c.(40-42)GTG>GGG	p.V14G	FBXO24_uc010lha.1_RNA|FBXO24_uc003uvl.1_Missense_Mutation_p.V14G|FBXO24_uc003uvn.1_Intron|uc011kjy.1_RNA|FBXO24_uc011kjz.1_Missense_Mutation_p.V52G|FBXO24_uc011kka.1_Missense_Mutation_p.V2G	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	14						ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					CTTGGGTAGGTGAAGAGAAGC	0.557													17	89					0	0	0.002780	0	0
EPO	2056	broad.mit.edu	37	7	100320727	100320727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:100320727G>A	uc003uwi.2	+	5	734	c.553G>A	c.(553-555)GGG>AGG	p.G185R	EPO_uc011kkc.1_Missense_Mutation_p.G184R	NM_000799	NP_000790	P01588	EPO_HUMAN	erythropoietin precursor	185					blood circulation|cellular hyperosmotic response|erythrocyte maturation|negative regulation of apoptosis|negative regulation of ion transmembrane transporter activity|negative regulation of sodium ion transport|positive regulation of cell proliferation|positive regulation of DNA replication|positive regulation of Ras protein signal transduction|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat5 protein|signal transduction	extracellular space	erythropoietin receptor binding|eukaryotic cell surface binding|hormone activity			central_nervous_system(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Darbepoetin alfa(DB00012)|Epoetin alfa(DB00016)	GCTGTACACAGGGGAGGCCTG	0.587													13	94					0	0	0.001368	0	0
MUC17	140453	broad.mit.edu	37	7	100683757	100683757	+	Silent	SNP	T	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:100683757T>G	uc003uxp.1	+	3	9113	c.9060T>G	c.(9058-9060)ACT>ACG	p.T3020T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3020	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|49.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CTGTGACCACTTCTACTGAAG	0.493													63	227					0	0	0.003610	0	0
SH2B2	10603	broad.mit.edu	37	7	101957774	101957774	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:101957774C>T	uc011kko.1	+	5	1481	c.1436C>T	c.(1435-1437)CCC>CTC	p.P479L		NM_020979	NP_066189	O14492	SH2B2_HUMAN	SH2B adaptor protein 2	436	SH2.				blood coagulation|insulin receptor signaling pathway|intracellular signal transduction	cytosol|plasma membrane	JAK pathway signal transduction adaptor activity|SH3/SH2 adaptor activity|signal transducer activity				0						GCAGGGGGGCCCCGGAACCAC	0.627													4	27					0	0	0.000248	0	0
PRKAR2B	5577	broad.mit.edu	37	7	106797452	106797452	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:106797452C>T	uc003vdx.2	+	9	1117	c.942C>T	c.(940-942)TTC>TTT	p.F314F		NM_002736	NP_002727	P31323	KAP3_HUMAN	cAMP-dependent protein kinase, regulatory	314	cAMP 2.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G2/M transition of mitotic cell cycle|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|transmembrane transport|water transport	centrosome|cytosol|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity			ovary(1)	1						ATTCTTTTTTCATTGTAGAAT	0.348													21	82					0	0	0.001523	0	0
SLC26A4	5172	broad.mit.edu	37	7	107314718	107314718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:107314718G>A	uc003vep.2	+	5	749	c.525G>A	c.(523-525)ATG>ATA	p.M175I		NM_000441	NP_000432	O43511	S26A4_HUMAN	pendrin	175	Extracellular (Potential).				regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)	7						ATACTACTATGATAGACACTG	0.433									Pendred_syndrome				16	76					0	0	0.006122	0	0
IQUB	154865	broad.mit.edu	37	7	123097526	123097526	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:123097526C>T	uc003vkn.2	-	12	2679	c.2102G>A	c.(2101-2103)TGG>TAG	p.W701*	IQUB_uc011kny.1_Nonsense_Mutation_p.W34*|IQUB_uc003vko.2_Nonsense_Mutation_p.W701*|IQUB_uc010lkt.2_RNA	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	701										ovary(3)|large_intestine(1)	4						GGATTTATTCCATCTGACCAT	0.473													18	117					0	0	0.001523	0	0
FAM40B	57464	broad.mit.edu	37	7	129091522	129091522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:129091522C>T	uc011koy.1	+	4	383	c.343C>T	c.(343-345)CGG>TGG	p.R115W	FAM40B_uc003vow.2_Missense_Mutation_p.R115W	NM_020704	NP_065755	Q9ULQ0	FA40B_HUMAN	hypothetical protein LOC57464 isoform a	115											0						ACTCTTGGACCGGCTAGAGGT	0.552													13	57					0	0	0.001368	0	0
ZC3HC1	51530	broad.mit.edu	37	7	129691111	129691111	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:129691111G>A	uc003vpi.2	-	1	123	c.96C>T	c.(94-96)ATC>ATT	p.I32I		NM_016478	NP_057562	Q86WB0	NIPA_HUMAN	zinc finger, C3HC type 1	32					cell division|mitosis	nucleus	protein kinase binding|zinc ion binding				0	Melanoma(18;0.0435)					TCAGCTGCCGGATTTTCTGGG	0.592													13	68					0	0	0.001855	0	0
PLXNA4	91584	broad.mit.edu	37	7	131825389	131825389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:131825389C>T	uc003vra.3	-	30	5636	c.5407G>A	c.(5407-5409)GAC>AAC	p.D1803N	PLXNA4_uc003vqz.3_Missense_Mutation_p.D88N	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1803	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CTGGGGATGTCCTTGGCATAC	0.602													14	45					0	0	0.004990	0	0
EXOC4	60412	broad.mit.edu	37	7	133059705	133059705	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:133059705C>T	uc003vrk.2	+	7	1166	c.1131C>T	c.(1129-1131)ATC>ATT	p.I377I	EXOC4_uc011kpo.1_Silent_p.I276I|EXOC4_uc003vri.2_Silent_p.I377I|EXOC4_uc003vrj.2_Silent_p.I377I	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	377					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				AGGAAGATATCAAACTGTATG	0.438													5	44					0	0	0.000602	0	0
OR9A4	130075	broad.mit.edu	37	7	141618934	141618934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:141618934C>T	uc003vwu.1	+	1	259	c.259C>T	c.(259-261)CCT>TCT	p.P87S		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					ATTGCTGCTCCCTGGGATGCA	0.522													34	104					0	0	0.003271	0	0
OR9A4	130075	broad.mit.edu	37	7	141619575	141619575	+	Silent	SNP	C	T	T	rs142578561	by1000genomes	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:141619575C>T	uc003vwu.1	+	1	900	c.900C>T	c.(898-900)GCC>GCT	p.A300A		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					TCATAGAGGCCCTTCGGGATG	0.428													13	68					0	0	0.004990	0	0
CLEC5A	23601	broad.mit.edu	37	7	141635657	141635657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:141635657C>T	uc003vwv.1	-	5	499	c.302G>A	c.(301-303)GGA>GAA	p.G101E	CLEC5A_uc011krm.1_Missense_Mutation_p.G78E|CLEC5A_uc003vww.1_Missense_Mutation_p.G101E|CLEC5A_uc010lnq.1_Missense_Mutation_p.G78E|CLEC5A_uc010lnr.1_Intron	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	101	C-type lectin.|Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					GGATCCTTTTCCTTTGCAAAA	0.443													14	74					0	0	0.001855	0	0
MGAM	8972	broad.mit.edu	37	7	141758047	141758047	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:141758047C>T	uc003vwy.2	+	31	3792	c.3738C>T	c.(3736-3738)TTC>TTT	p.F1246F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1246	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CTTTGGGGTTCCAGCTGTGTC	0.473													59	271					0	0	0.003610	0	0
MGAM	8972	broad.mit.edu	37	7	141760126	141760126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:141760126C>T	uc003vwy.2	+	34	4129	c.4075C>T	c.(4075-4077)CCT>TCT	p.P1359S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1359	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GCCTGATTTTCCTGATGTTGT	0.438													7	36					0	0	0.001984	0	0
PRSS1	5644	broad.mit.edu	37	7	142457353	142457353	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:142457353C>T	uc003wak.2	+	1	35	c.18C>T	c.(16-18)ATC>ATT	p.I6I	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|PRSS1_uc011ksm.1_Silent_p.I6I|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	6					digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			CACTCCTGATCCTTACCTTTG	0.562									Hereditary_Pancreatitis				15	57					0	0	0.004990	0	0
PRSS1	5644	broad.mit.edu	37	7	142459787	142459787	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:142459787C>T	uc003wak.2	+	3	380	c.363C>T	c.(361-363)GCC>GCT	p.A121A	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_3'UTR|PRSS1_uc003wam.2_Silent_p.A61A	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	121	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			TAATCAACGCCCGCGTGTCCA	0.577									Hereditary_Pancreatitis				17	69					0	0	0.004990	0	0
Unknown	0	broad.mit.edu	37	7	142499093	142499093	+	RNA	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:142499093G>A	uc011ksh.1	+	3		c.472G>A			uc011ksi.1_RNA|uc003vzw.1_RNA|uc010loj.1_RNA|uc003wad.2_RNA|uc003wag.1_3'UTR|uc003wbe.3_RNA|uc003wbf.3_RNA|uc003wbg.3_RNA|uc003wbh.3_Missense_Mutation_p.E170K|uc003wbi.3_RNA|uc003wbj.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone:TCRVB.3.																		CGTCAGCGCCGAGGCCTGGGG	0.597													13	155					0	0	0.001368	0	0
Unknown	0	broad.mit.edu	37	7	142510322	142510322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:142510322G>A	uc003wbp.2	-	2	396	c.284C>T	c.(283-285)TCT>TTT	p.S95F						SubName: Full=V_segment translation product; Flags: Fragment;																		GAGCTTCTTAGAACTCAGGAT	0.557													5	13					0	0	0.000602	0	0
OR6B1	135946	broad.mit.edu	37	7	143701563	143701563	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:143701563G>A	uc003wdt.1	+	1	474	c.474G>A	c.(472-474)GCG>GCA	p.A158A		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					TCTCCCTGGCGAAGATCTACT	0.532													7	25					0	0	0.001984	0	0
OR2A2	442361	broad.mit.edu	37	7	143806795	143806795	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:143806795G>A	uc011ktz.1	+	1	120	c.120G>A	c.(118-120)GGG>GGA	p.G40G		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					CCCTGCTGGGGAATGGGGTCA	0.512													22	120					0	0	0.004656	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146805262	146805262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:146805262G>A	uc003weu.1	+	5	1090	c.574G>A	c.(574-576)GGC>AGC	p.G192S		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	192	Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CAACTTTGATGGCCATGTTGT	0.348										HNSCC(39;0.1)			9	40					0	0	0.008291	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147600733	147600733	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:147600733C>T	uc003weu.1	+	14	2691	c.2175C>T	c.(2173-2175)ATC>ATT	p.I725I		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	725	Extracellular (Potential).|Fibrinogen C-terminal.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GGCCTGGAATCCAGAAATGTG	0.532										HNSCC(39;0.1)			5	22					0	0	0.000602	0	0
ZNF786	136051	broad.mit.edu	37	7	148767963	148767963	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:148767963G>A	uc003wfh.2	-	4	2038	c.1901C>T	c.(1900-1902)GCC>GTC	p.A634V	ZNF786_uc011kuk.1_Missense_Mutation_p.A597V|ZNF786_uc003wfi.2_Missense_Mutation_p.A548V	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	634	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			CTTCATGTCGGCCTTCACGCG	0.612													13	52					0	0	0.001368	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217156	150217156	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:150217156G>A	uc003whk.2	+	2	224	c.94G>A	c.(94-96)GAA>AAA	p.E32K		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	32							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCTTGGAGAGGAAATCTTTGA	0.507													12	38					0	0	0.000978	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417521	150417521	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:150417521C>T	uc003whq.2	+	3	516	c.429C>T	c.(427-429)GTC>GTT	p.V143V	GIMAP1_uc003whp.2_Silent_p.V151V	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	143	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGGAGGACGTCCTAAAATGGA	0.647													18	62					0	0	0.004990	0	0
KCNH2	3757	broad.mit.edu	37	7	150645619	150645619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr7:150645619G>A	uc003wic.2	-	11	2618	c.2605C>T	c.(2605-2607)CCG>TCG	p.P869S	KCNH2_uc003wib.2_Missense_Mutation_p.P529S|KCNH2_uc011kux.1_Missense_Mutation_p.P773S	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	869	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	GGGGAGCCCGGGATCATGTTG	0.547													6	31					0	0	0.001984	0	0
CSMD1	64478	broad.mit.edu	37	8	3045479	3045479	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:3045479C>T	uc011kwk.1	-	36	5925	c.5535G>A	c.(5533-5535)GTG>GTA	p.V1845V	CSMD1_uc011kwj.1_Silent_p.V1237V|CSMD1_uc003wqe.2_Silent_p.V1001V|CSMD1_uc010lrg.2_5'UTR	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1845	Extracellular (Potential).|CUB 11.			IQVISFATEQNWDSL -> DPSDQFCHGAELGLPF (in Ref. 1; AAK73475/AAG52948).		integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CAAAACTGATCACTTGGATCT	0.433													5	26					0	0	0.000602	0	0
CSMD1	64478	broad.mit.edu	37	8	3046514	3046514	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:3046514G>A	uc011kwk.1	-	35	5811	c.5421C>T	c.(5419-5421)TTC>TTT	p.F1807F	CSMD1_uc011kwj.1_Silent_p.F1199F|CSMD1_uc003wqe.2_Silent_p.F963F|CSMD1_uc010lrg.2_5'Flank	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1807	Extracellular (Potential).|CUB 11.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTCGTTGAGTGAAATTGCCAC	0.458													6	19					0	0	0.003080	0	0
CSMD1	64478	broad.mit.edu	37	8	3265455	3265455	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:3265455G>A	uc011kwk.1	-	14	2430	c.2040C>T	c.(2038-2040)TCC>TCT	p.S680S	CSMD1_uc011kwj.1_Silent_p.S72S	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	680	Extracellular (Potential).|CUB 4.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGCCAGTAGTGGAATGGTCAG	0.458													5	20					0	0	0.000602	0	0
RP1L1	94137	broad.mit.edu	37	8	10466676	10466676	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:10466676C>T	uc003wtc.2	-	4	5161	c.4932G>A	c.(4930-4932)GGG>GGA	p.G1644G		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1644					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCAGCTGGCTCCCCAGGGCTG	0.687													5	32					0	0	0.001168	0	0
RP1L1	94137	broad.mit.edu	37	8	10468112	10468112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:10468112C>T	uc003wtc.2	-	4	3725	c.3496G>A	c.(3496-3498)GAC>AAC	p.D1166N		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1166					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TCCAGCTGGTCTTCCCCAACG	0.602													13	44					0	0	0.001855	0	0
BLK	640	broad.mit.edu	37	8	11407735	11407735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:11407735G>A	uc003wty.2	+	6	1017	c.436G>A	c.(436-438)GGC>AGC	p.G146S	BLK_uc003wtz.2_Missense_Mutation_p.G75S	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	146	SH2.				intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		CAACAAGGCCGGCTCCTTTCT	0.557													23	76					0	0	0.006320	0	0
GATA4	2626	broad.mit.edu	37	8	11606439	11606439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:11606439G>A	uc003wuc.2	+	3	1182	c.628G>A	c.(628-630)GAC>AAC	p.D210N	GATA4_uc003wub.1_Missense_Mutation_p.D4N|GATA4_uc011kxc.1_Missense_Mutation_p.D211N	NM_002052	NP_002043	P43694	GATA4_HUMAN	GATA binding protein 4	210					atrial septum primum morphogenesis|atrial septum secundum morphogenesis|blood coagulation|cardiac right ventricle morphogenesis|cell-cell signaling|embryonic foregut morphogenesis|embryonic heart tube anterior/posterior pattern formation|endocardial cushion development|endoderm development|heart looping|intestinal epithelial cell differentiation|male gonad development|positive regulation of angiogenesis|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation vascular endothelial growth factor production|response to drug|transcription from RNA polymerase II promoter|ventricular septum development	nucleoplasm	activating transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(15;0.0839)		STAD - Stomach adenocarcinoma(15;0.00225)	COAD - Colon adenocarcinoma(149;0.199)		TATGTTTGACGACTTCTCAGA	0.517													30	135					0	0	0.004289	0	0
SGCZ	137868	broad.mit.edu	37	8	14181710	14181710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:14181710C>T	uc003wwq.2	-	3	898	c.238G>A	c.(238-240)GGT>AGT	p.G80S	SGCZ_uc010lss.2_Intron	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	67	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		TTTCCCATACCATCCTACAAG	0.363													9	36					0	0	0.006214	0	0
PCM1	5108	broad.mit.edu	37	8	17830107	17830107	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:17830107A>G	uc003wyi.3	+	23	4276	c.3854A>G	c.(3853-3855)CAG>CGG	p.Q1285R	PCM1_uc011kyh.1_Missense_Mutation_p.Q1285R|PCM1_uc003wyj.3_Missense_Mutation_p.Q1286R|PCM1_uc011kyi.1_Missense_Mutation_p.Q147R|PCM1_uc011kyj.1_Missense_Mutation_p.Q22R|PCM1_uc003wyk.3_Missense_Mutation_p.Q22R	NM_006197	NP_006188	Q15154	PCM1_HUMAN	pericentriolar material 1	1285	Interaction with HAP1.				centrosome organization|cilium assembly|G2/M transition of mitotic cell cycle|interkinetic nuclear migration|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome	centriolar satellite|cytosol|nuclear membrane|pericentriolar material	identical protein binding		PCM1/JAK2(30)	haematopoietic_and_lymphoid_tissue(30)|breast(4)|ovary(2)	36				Colorectal(111;0.0789)		GCGTCTGCACAGGCCAGCCTG	0.398			T	RET|JAK2	papillary thyroid|CML|MPD								9	52					0	0	0.004482	0	0
POLR3D	661	broad.mit.edu	37	8	22107734	22107734	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:22107734C>T	uc003xbl.2	+	8	1151	c.1068C>T	c.(1066-1068)TTC>TTT	p.F356F	POLR3D_uc003xbm.2_Silent_p.F356F|POLR3D_uc011kze.1_RNA	NM_001722	NP_001713	P05423	RPC4_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	356					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity				0				Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)		CCTGCTCCTTCCTGCAGGTAA	0.557													8	42					0	0	0.004482	0	0
CHMP7	91782	broad.mit.edu	37	8	23117739	23117739	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:23117739C>A	uc003xdc.2	+	10	1851	c.1203C>A	c.(1201-1203)AAC>AAA	p.N401K	CHMP7_uc003xdd.2_Missense_Mutation_p.N291K|CHMP7_uc003xde.2_Missense_Mutation_p.T239N	NM_152272	NP_689485	Q8WUX9	CHMP7_HUMAN	CHMP family, member 7	401					cellular membrane organization|late endosome to vacuole transport	cytosol|ESCRT III complex	protein transporter activity				0		Prostate(55;0.0513)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		TGCCTGACAACCCCCGCAATA	0.458													18	75					0.000566183	0.000634957	0.004990	1	0
EBF2	64641	broad.mit.edu	37	8	25708118	25708118	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:25708118C>T	uc003xes.1	-	15	1705	c.1688G>A	c.(1687-1689)GGA>GAA	p.G563E	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	563					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding	p.G563R(1)		ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		ACCTCTGAATCCATTTCCATT	0.488													14	70					0	0	0.004007	0	0
PNMA2	10687	broad.mit.edu	37	8	26365392	26365392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:26365392G>A	uc003xez.2	-	3	1650	c.880C>T	c.(880-882)CGC>TGC	p.R294C		NM_007257	NP_009188	Q9UL42	PNMA2_HUMAN	paraneoplastic antigen MA2	294					apoptosis	nucleolus	protein binding				0		all_cancers(63;0.109)|Ovarian(32;2.61e-05)|all_epithelial(46;0.105)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0196)|Epithelial(17;3.13e-11)|Colorectal(74;0.123)		tgctccaggcggacctggtcc	0													6	34					0	0	0.001168	0	0
SCARA3	51435	broad.mit.edu	37	8	27516292	27516292	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:27516292T>G	uc003xga.1	+	5	746	c.605T>G	c.(604-606)CTG>CGG	p.L202R	SCARA3_uc003xgb.1_Missense_Mutation_p.L202R	NM_016240	NP_057324	Q6AZY7	SCAR3_HUMAN	scavenger receptor class A, member 3 isoform 1	202	Extracellular (Potential).				response to oxidative stress|UV protection	collagen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	scavenger receptor activity			skin(2)|ovary(1)|breast(1)	4		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Colorectal(74;0.148)		ACAGCTGGCCTGGACCTCTCT	0.602													6	21					0	0	0.001168	0	0
C8orf80	389643	broad.mit.edu	37	8	27927076	27927077	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:27927076_27927077CC>TT	uc003xgm.3	-	4	384_385	c.241_242GG>AA	c.(241-243)GGA>AAA	p.G81K		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	81						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		ATACTTGACTCCATTAGGGATG	0.416													19	79					0	0	0.004672	0	0
TEX15	56154	broad.mit.edu	37	8	30706271	30706271	+	Missense_Mutation	SNP	G	A	A	rs146070106		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:30706271G>A	uc003xil.2	-	1	263	c.263C>T	c.(262-264)TCG>TTG	p.S88L	TEX15_uc011lbc.1_Missense_Mutation_p.S475L	NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	88										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		AGATGGTGTCGATTTTATTTC	0.383													5	34					0	0	0.001168	0	0
MAK16	84549	broad.mit.edu	37	8	33342733	33342733	+	Silent	SNP	G	A	A	rs147879677		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:33342733G>A	uc003xjj.2	+	1	49	c.9G>A	c.(7-9)TCG>TCA	p.S3S	C8orf41_uc010lvu.1_Intron	NM_032509	NP_115898	Q9BXY0	MAK16_HUMAN	MAK16 homolog	3						nucleolus				ovary(1)	1						CCATGCAGTCGGATGATGTGA	0.597													23	80					0	0	0.006320	0	0
UNC5D	137970	broad.mit.edu	37	8	35624420	35624420	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:35624420G>A	uc003xjr.1	+	15	2642	c.2314G>A	c.(2314-2316)GAA>AAA	p.E772K	UNC5D_uc003xjs.1_Missense_Mutation_p.E767K|UNC5D_uc003xju.1_Missense_Mutation_p.E348K	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	772	Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		TCCCCTGCAGGAAGTCCCGTT	0.517													4	44					0	0	0.001168	0	0
KCNU1	157855	broad.mit.edu	37	8	36793081	36793081	+	Silent	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:36793081T>C	uc010lvw.2	+	27	3180	c.3093T>C	c.(3091-3093)GAT>GAC	p.D1031D		NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	1031	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		TGCCTTCAGATCTTGTGTTTT	0.428													24	100					0	0	0.003330	0	0
ASH2L	9070	broad.mit.edu	37	8	37968341	37968341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:37968341C>T	uc003xkt.3	+	5	633	c.575C>T	c.(574-576)TCC>TTC	p.S192F	ASH2L_uc011lbk.1_Missense_Mutation_p.S53F|ASH2L_uc003xku.3_Missense_Mutation_p.S98F|ASH2L_uc010lwa.2_Missense_Mutation_p.S98F	NM_004674	NP_004665	Q9UBL3	ASH2L_HUMAN	ash2-like isoform a	192					hemopoiesis|histone H3-K4 methylation|positive regulation of cell proliferation|regulation of transcription, DNA-dependent|response to estrogen stimulus|transcription from RNA polymerase II promoter	Set1C/COMPASS complex	metal ion binding|protein binding|transcription regulatory region DNA binding			ovary(1)|lung(1)	2	Colorectal(12;0.000501)	Lung NSC(58;0.0295)|all_lung(54;0.0413)				ACAATGTTCTCCAAAGATAAG	0.398													7	27					0	0	0.001984	0	0
FGFR1	2260	broad.mit.edu	37	8	38282033	38282033	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:38282033G>A	uc003xlp.2	-	7	1872	c.930C>T	c.(928-930)ATC>ATT	p.I310I	FGFR1_uc011lbo.1_Silent_p.I308I|FGFR1_uc011lbp.1_Silent_p.I221I|FGFR1_uc011lbq.1_Silent_p.I219I|FGFR1_uc010lwk.2_Silent_p.I302I|FGFR1_uc011lbr.1_RNA|FGFR1_uc011lbs.1_Silent_p.I150I|FGFR1_uc011lbt.1_Silent_p.I219I|FGFR1_uc011lbu.1_Silent_p.I341I|FGFR1_uc011lbv.1_Silent_p.I308I|FGFR1_uc011lbw.1_Silent_p.I221I|FGFR1_uc011lbx.1_Silent_p.I221I|FGFR1_uc003xlv.2_Silent_p.I221I|FGFR1_uc003xlu.2_Silent_p.I219I	NM_023110	NP_075598	P11362	FGFR1_HUMAN	fibroblast growth factor receptor 1 isoform 1	310	Ig-like C2-type 3.|Extracellular (Potential).				axon guidance|cell growth|insulin receptor signaling pathway|MAPKKK cascade|positive regulation of cell proliferation|skeletal system development	extracellular region|integral to plasma membrane|membrane fraction	ATP binding|fibroblast growth factor receptor activity|heparin binding|protein homodimerization activity			lung(5)|central_nervous_system(5)|stomach(2)|breast(2)|ovary(1)	15	all_cancers(2;9.05e-47)|all_epithelial(2;2.64e-50)|all_lung(3;1.71e-23)|Lung NSC(2;3.61e-23)|Colorectal(12;0.000442)	Breast(189;1.48e-05)|all_lung(54;0.00354)|Lung NSC(58;0.0138)|Hepatocellular(245;0.065)	Epithelial(3;3.96e-34)|all cancers(3;3.06e-30)|BRCA - Breast invasive adenocarcinoma(5;2.28e-21)|COAD - Colon adenocarcinoma(9;0.24)		Palifermin(DB00039)	TTACCTTCAAGATCTGGACAT	0.567		1	T	BCR|FOP|ZNF198|CEP1	MPD|NHL		Pfeiffer syndrome|Kallman syndrome						13	70					0	0	0.001855	0	0
ADAM18	8749	broad.mit.edu	37	8	39468211	39468211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:39468211C>T	uc003xni.2	+	6	508	c.508C>T	c.(508-510)CCT>TCT	p.P170S	ADAM18_uc003xnh.2_Missense_Mutation_p.P170S|ADAM18_uc010lww.2_Intron|ADAM18_uc010lwx.2_Missense_Mutation_p.P170S	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	170					cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			CTACAAAGTTCCTTTAAACTC	0.323													6	33					0	0	0.003080	0	0
ADAM18	8749	broad.mit.edu	37	8	39502882	39502882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:39502882G>A	uc003xni.2	+	11	935	c.935G>A	c.(934-936)GGA>GAA	p.G312E	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.G288E	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	312	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			GGTTTGGAGGGATTTTCGGTT	0.313													10	50					0	0	0.008291	0	0
IDO1	3620	broad.mit.edu	37	8	39776385	39776385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:39776385G>A	uc003xnm.2	+	4	469	c.355G>A	c.(355-357)GAA>AAA	p.E119K	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	119					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	CAAGAAACTGGAACTGCCTCC	0.358													16	62					0	0	0.004007	0	0
ANK1	286	broad.mit.edu	37	8	41547801	41547801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:41547801C>T	uc003xok.2	-	33	4132	c.4048G>A	c.(4048-4050)GAG>AAG	p.E1350K	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.E666K|ANK1_uc003xoi.2_Missense_Mutation_p.E1350K|ANK1_uc003xoj.2_Missense_Mutation_p.E1350K|ANK1_uc003xol.2_Missense_Mutation_p.E1350K|ANK1_uc003xom.2_Missense_Mutation_p.E1391K	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1350					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TGGGTGTCCTCGTACTTCATC	0.607													14	54					0	0	0.001855	0	0
ST18	9705	broad.mit.edu	37	8	53038684	53038684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:53038684G>A	uc003xqz.2	-	18	2839	c.2683C>T	c.(2683-2685)CTC>TTC	p.L895F	ST18_uc011ldq.1_Missense_Mutation_p.L542F|ST18_uc011ldr.1_Missense_Mutation_p.L860F|ST18_uc011lds.1_Missense_Mutation_p.L800F|ST18_uc003xra.2_Missense_Mutation_p.L895F	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	895	C2HC-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TGTGCATTGAGAGGACATCCA	0.363													6	51					0	0	0.001168	0	0
ST18	9705	broad.mit.edu	37	8	53077726	53077726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:53077726G>A	uc003xqz.2	-	7	1420	c.1264C>T	c.(1264-1266)CAT>TAT	p.H422Y	ST18_uc011ldq.1_Missense_Mutation_p.H69Y|ST18_uc011ldr.1_Missense_Mutation_p.H387Y|ST18_uc011lds.1_Missense_Mutation_p.H327Y|ST18_uc003xra.2_Missense_Mutation_p.H422Y|ST18_uc003xrb.2_Missense_Mutation_p.H422Y	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	422	C2HC-type 2.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				CTGTTCACATGACCCCTTCCT	0.403													42	177					0	0	0.002852	0	0
ST18	9705	broad.mit.edu	37	8	53084844	53084844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:53084844C>T	uc003xqz.2	-	5	733	c.577G>A	c.(577-579)GAA>AAA	p.E193K	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Missense_Mutation_p.E158K|ST18_uc011lds.1_Missense_Mutation_p.E98K|ST18_uc003xra.2_Missense_Mutation_p.E193K|ST18_uc003xrb.2_Missense_Mutation_p.E193K	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	193						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				GAGTTACTTTCATTGTCATCA	0.438													7	51					0	0	0.001984	0	0
ATP6V1H	51606	broad.mit.edu	37	8	54730003	54730003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:54730003G>A	uc003xrl.2	-	5	546	c.394C>T	c.(394-396)CGC>TGC	p.R132C	ATP6V1H_uc003xrk.2_Missense_Mutation_p.R92C|ATP6V1H_uc003xrm.2_Missense_Mutation_p.R132C|ATP6V1H_uc003xrn.2_Missense_Mutation_p.R132C|ATP6V1H_uc011ldv.1_Missense_Mutation_p.R52C|ATP6V1H_uc010lyd.2_Missense_Mutation_p.R68C	NM_213620	NP_998785	Q9UI12	VATH_HUMAN	ATPase, H+ transporting, lysosomal 50/57kDa, V1	132					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|endocytosis|insulin receptor signaling pathway|interspecies interaction between organisms|regulation of defense response to virus by virus|transferrin transport|vacuolar acidification|viral reproduction	cytosol|plasma membrane|vacuolar proton-transporting V-type ATPase, V1 domain	enzyme regulator activity|protein binding|proton-transporting ATPase activity, rotational mechanism				0		all_epithelial(80;0.0487)|Lung NSC(129;0.109)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;2.79e-06)|Epithelial(17;0.000629)|all cancers(17;0.00359)			GGATCCTGGCGATTCAACATT	0.289													7	35					0	0	0.001984	0	0
RP1	6101	broad.mit.edu	37	8	55538031	55538031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:55538031C>T	uc003xsd.1	+	4	1737	c.1589C>T	c.(1588-1590)TCA>TTA	p.S530L	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	530					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GAGGAGTCATCATTAGAAAGA	0.333													9	23					0	0	0.004482	0	0
PENK	5179	broad.mit.edu	37	8	57354009	57354009	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:57354009C>T	uc003xsz.2	-	2	707	c.626G>A	c.(625-627)CGA>CAA	p.R209Q	PENK_uc003xta.3_Missense_Mutation_p.R209Q	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	209					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			GCCCCCATATCGCTTCTGCAG	0.522													39	102					0	0	0.004878	0	0
CLVS1	157807	broad.mit.edu	37	8	62212642	62212642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:62212642C>T	uc003xuh.2	+	2	580	c.256C>T	c.(256-258)CAC>TAC	p.H86Y	CLVS1_uc003xug.2_Missense_Mutation_p.H86Y|CLVS1_uc003xui.2_Intron|CLVS1_uc010lyp.2_Missense_Mutation_p.H86Y	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	86					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						CAGGAAGTTTCACCAAGCGGA	0.468													8	36					0	0	0.003080	0	0
CSPP1	79848	broad.mit.edu	37	8	68107760	68107760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:68107760G>A	uc003xxi.2	+	31	3734	c.3703G>A	c.(3703-3705)GAG>AAG	p.E1235K	ARFGEF1_uc003xxl.1_Intron|CSPP1_uc003xxj.2_Missense_Mutation_p.E1200K|CSPP1_uc003xxk.2_Missense_Mutation_p.E855K|CSPP1_uc010lyw.2_3'UTR	NM_001077204	NP_001070672	Q1MSJ5	CSPP1_HUMAN	centrosome spindle pole associated protein 1	1235						centrosome|microtubule|spindle				ovary(3)|breast(2)	5	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00145)|OV - Ovarian serous cystadenocarcinoma(28;0.00589)|all cancers(69;0.0069)|BRCA - Breast invasive adenocarcinoma(89;0.153)			GCTGAACCAGGAGCAGCAGCA	0.527													10	52					0	0	0.006214	0	0
ZFHX4	79776	broad.mit.edu	37	8	77761794	77761794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:77761794G>A	uc003yav.2	+	8	3944	c.3557G>A	c.(3556-3558)CGT>CAT	p.R1186H	ZFHX4_uc003yau.1_Missense_Mutation_p.R1231H|ZFHX4_uc003yaw.1_Missense_Mutation_p.R1186H	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1186	C2H2-type 8.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GACCAAAGTCGTATCCAGATG	0.413										HNSCC(33;0.089)			12	72					0	0	0.002450	0	0
PKIA	5569	broad.mit.edu	37	8	79510760	79510760	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:79510760C>T	uc003yba.2	+	3	665	c.141C>T	c.(139-141)ATC>ATT	p.I47I	PKIA_uc003ybb.2_Silent_p.I47I|PKIA_uc010lzo.2_Silent_p.I47I	NM_006823	NP_006814	P61925	IPKA_HUMAN	cAMP-dependent protein kinase inhibitor alpha	47							cAMP-dependent protein kinase inhibitor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GTCTTGATATCAACAAGACAG	0.408													14	78					0	0	0.004007	0	0
CNGB3	54714	broad.mit.edu	37	8	87755845	87755845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:87755845G>A	uc003ydx.2	-	1	57	c.11C>T	c.(10-12)TCG>TTG	p.S4L		NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	4	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						TTTTGTCAGCGATTTAAACAT	0.393													12	49					0	0	0.003163	0	0
CNBD1	168975	broad.mit.edu	37	8	88249161	88249161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:88249161G>A	uc003ydy.2	+	6	640	c.592G>A	c.(592-594)GGA>AGA	p.G198R		NM_173538	NP_775809	Q8NA66	CNBD1_HUMAN	cyclic nucleotide binding domain containing 1	198										ovary(3)	3						TGCAAATGATGGATTTTATGT	0.348													20	63					0	0	0.001882	0	0
MMP16	4325	broad.mit.edu	37	8	89053914	89053914	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:89053914A>C	uc003yeb.3	-	10	1881	c.1599T>G	c.(1597-1599)GAT>GAG	p.D533E		NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	533	Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						CTGTTGGTCCATCACAGCCCA	0.428													20	67					0	0	0.007413	0	0
CALB1	793	broad.mit.edu	37	8	91090658	91090658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:91090658C>T	uc003yel.1	-	3	356	c.174G>A	c.(172-174)ATG>ATA	p.M58I	CALB1_uc003yem.1_RNA|CALB1_uc011lge.1_Missense_Mutation_p.M1I	NM_004929	NP_004920	P05937	CALB1_HUMAN	calbindin 1	58	EF-hand 2.					nucleus	calcium ion binding|vitamin D binding			pancreas(1)	1			BRCA - Breast invasive adenocarcinoma(11;0.00953)			CAAAAGTTTTCATTTCAGGTG	0.299													15	110					0	0	0.004990	0	0
RUNX1T1	862	broad.mit.edu	37	8	93023298	93023298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:93023298C>T	uc003yfd.2	-	4	574	c.490G>A	c.(490-492)GAA>AAA	p.E164K	RUNX1T1_uc003yfc.1_Missense_Mutation_p.E137K|RUNX1T1_uc003yfe.1_Missense_Mutation_p.E127K|RUNX1T1_uc010mao.2_Missense_Mutation_p.E137K|RUNX1T1_uc011lgi.1_Missense_Mutation_p.E175K|RUNX1T1_uc003yfh.1_Missense_Mutation_p.E127K|RUNX1T1_uc003yfb.1_Missense_Mutation_p.E127K|RUNX1T1_uc003yff.1_Missense_Mutation_p.E127K|RUNX1T1_uc003yfg.1_Missense_Mutation_p.E127K	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	164	TAFH.				generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			GAATGAAATTCTTCAATTGTC	0.323													8	54					0	0	0.006214	0	0
VPS13B	157680	broad.mit.edu	37	8	100831746	100831746	+	Nonsense_Mutation	SNP	G	T	T	rs143787982		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:100831746G>T	uc003yiv.2	+	48	8914	c.8803G>T	c.(8803-8805)GAA>TAA	p.E2935*	VPS13B_uc003yiw.2_Nonsense_Mutation_p.E2910*	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2935					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			GATCCTTGACGAATTCTATGG	0.398													12	45					1.61879e-10	1.83443e-10	0.001368	1	0
ZFPM2	23414	broad.mit.edu	37	8	106813400	106813400	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:106813400C>T	uc003ymd.2	+	8	1113	c.1090C>T	c.(1090-1092)CGA>TGA	p.R364*	ZFPM2_uc011lhs.1_Nonsense_Mutation_p.R95*|uc003yme.1_5'Flank	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	364	C2H2-type 3.				blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AGCTGCCTTCCGATGTAATCA	0.507													24	144					0	0	0.003954	0	0
RSPO2	340419	broad.mit.edu	37	8	109001381	109001381	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:109001381G>A	uc003yms.2	-	3	844	c.186C>T	c.(184-186)TTC>TTT	p.F62F	RSPO2_uc003ymq.2_5'UTR|RSPO2_uc003ymr.2_Intron	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	62					Wnt receptor signaling pathway	extracellular region	heparin binding			skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			CTCTTCGAAGGAAGAAGAACA	0.473													8	44					0	0	0.003080	0	0
CSMD3	114788	broad.mit.edu	37	8	113420569	113420569	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:113420569C>T	uc003ynu.2	-	34	5742	c.5583G>A	c.(5581-5583)AAG>AAA	p.K1861K	CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Silent_p.K1821K|CSMD3_uc011lhx.1_Silent_p.K1757K	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1861	Extracellular (Potential).|CUB 10.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGTGAAATCCCTTAGCTGTTA	0.353										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			16	85					0	0	0.004990	0	0
SNTB1	6641	broad.mit.edu	37	8	121644785	121644785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:121644785C>T	uc010mdg.2	-	3	1121	c.895G>A	c.(895-897)GAC>AAC	p.D299N	SNTB1_uc003ype.2_Missense_Mutation_p.D299N	NM_021021	NP_066301	Q13884	SNTB1_HUMAN	basic beta 1 syntrophin	299					muscle contraction	cell junction|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|calmodulin binding			skin(5)	5	Lung NSC(37;4.46e-09)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)		STAD - Stomach adenocarcinoma(47;0.00503)			GTCAGCAGGTCATTAACGTTG	0.537													4	44					0	0	0.000248	0	0
DENND3	22898	broad.mit.edu	37	8	142165978	142165978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:142165978G>A	uc003yvy.2	+	8	1143	c.865G>A	c.(865-867)GAT>AAT	p.D289N	DENND3_uc010mep.2_Missense_Mutation_p.D302N|DENND3_uc003yvz.1_5'Flank	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	289	DENN.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			GATAAATATTGATCATGGGAG	0.428													11	57					0	0	0.000978	0	0
LY6K	54742	broad.mit.edu	37	8	143784711	143784712	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:143784711_143784712GG>TA	uc011ljv.1	+	3	837_838	c.420_421GG>TA	c.(418-423)ATGGGT>ATTAGT	p.140_141MG>IS	LY6K_uc011ljw.1_3'UTR|LY6K_uc011ljx.1_3'UTR	NM_017527	NP_059997	Q17RY6	LY6K_HUMAN	lymphocyte antigen 6 complex, locus K isoform 1	140_141	UPAR/Ly6.					anchored to membrane|cytoplasm|extracellular region|nucleolus|plasma membrane				central_nervous_system(1)	1	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					CTGGGAGCATGGGTGAGAGCTG	0.545													14	76					0	0	0.004672	0	0
LYPD2	137797	broad.mit.edu	37	8	143832508	143832508	+	Missense_Mutation	SNP	C	T	T	rs145933616	by1000genomes	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:143832508C>T	uc003ywz.2	-	2	222	c.139G>A	c.(139-141)GAA>AAA	p.E47K		NM_205545	NP_991108	Q6UXB3	LYPD2_HUMAN	LY6/PLAUR domain containing 2 precursor	47	UPAR/Ly6.					anchored to membrane|plasma membrane					0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					CACATGGTTTCGTTGGTGGTG	0.652													25	119					0	0	0.005443	0	0
ZNF34	80778	broad.mit.edu	37	8	145999437	145999437	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr8:145999437C>G	uc003zdy.3	-	6	999	c.897G>C	c.(895-897)AGG>AGC	p.R299S	ZNF34_uc010mgb.2_Missense_Mutation_p.R196S|ZNF34_uc003zdx.3_Missense_Mutation_p.R278S	NM_030580	NP_085057	Q8IZ26	ZNF34_HUMAN	zinc finger protein 34	299	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.221)	OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;5.18e-38)|all cancers(56;4.41e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.0179)		CTGAGTGCATCCTTCGGTGAT	0.532													10	37					0	0	0.008291	0	0
DOCK8	81704	broad.mit.edu	37	9	441916	441916	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:441916C>T	uc003zgf.2	+	42	5509	c.5397C>T	c.(5395-5397)TTC>TTT	p.F1799F	DOCK8_uc010mgu.2_Silent_p.F1101F|DOCK8_uc010mgv.2_Silent_p.F1699F|DOCK8_uc003zgk.2_Silent_p.F1257F	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	1799	DHR-2.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		GAGTTGGTTTCTTTGGATCCA	0.408													17	62					0	0	0.004990	0	0
DMRT3	58524	broad.mit.edu	37	9	990637	990637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:990637C>T	uc003zgw.1	+	2	1089	c.1051C>T	c.(1051-1053)CCC>TCC	p.P351S		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	351					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		CAACGTTGTCCCCAGTCCCTT	0.592													9	45					0	0	0.008291	0	0
PTPRD	5789	broad.mit.edu	37	9	8518269	8518269	+	Silent	SNP	C	T	T	rs137892356		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:8518269C>T	uc003zkk.2	-	20	1833	c.1122G>A	c.(1120-1122)GCG>GCA	p.A374A	PTPRD_uc003zkp.2_Silent_p.A374A|PTPRD_uc003zkq.2_Silent_p.A374A|PTPRD_uc003zkr.2_Silent_p.A368A|PTPRD_uc003zks.2_Silent_p.A364A|PTPRD_uc003zkl.2_Silent_p.A374A|PTPRD_uc003zkm.2_Silent_p.A361A|PTPRD_uc003zkn.2_Silent_p.A374A|PTPRD_uc003zko.2_Silent_p.A371A	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	374	Fibronectin type-III 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		AGCGTGTGGTCGCCACCCCAT	0.483										TSP Lung(15;0.13)			18	106					0	0	0.008871	0	0
MPDZ	8777	broad.mit.edu	37	9	13106996	13106996	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:13106996T>C	uc010mhy.2	-	45	6145	c.6094A>G	c.(6094-6096)AAA>GAA	p.K2032E	MPDZ_uc003zkx.3_Missense_Mutation_p.K256E|MPDZ_uc003zky.3_Missense_Mutation_p.K595E|MPDZ_uc010mib.2_Missense_Mutation_p.K766E|MPDZ_uc010mhx.2_Missense_Mutation_p.K883E|MPDZ_uc011lmm.1_Missense_Mutation_p.K920E|MPDZ_uc003zkz.3_Missense_Mutation_p.K754E|MPDZ_uc010mhz.2_Missense_Mutation_p.K2028E|MPDZ_uc011lmn.1_Missense_Mutation_p.K1999E|MPDZ_uc003zlb.3_Missense_Mutation_p.K2032E	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	2061	PDZ 13.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		ACAGTGCCTTTTGTCCGTTTA	0.488													31	124					0	0	0.001786	0	0
SH3GL2	6456	broad.mit.edu	37	9	17791249	17791249	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:17791249C>T	uc003zna.2	+	7	933	c.645C>T	c.(643-645)CTC>CTT	p.L215L	SH3GL2_uc011lmy.1_Silent_p.L168L	NM_003026	NP_003017	Q99962	SH3G2_HUMAN	SH3-domain GRB2-like 2	215	BAR.|Potential.				axon guidance|central nervous system development|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport	cytosol|Golgi membrane|plasma membrane	identical protein binding|lipid binding			skin(1)	1				GBM - Glioblastoma multiforme(50;2.71e-10)|Lung(42;0.203)		TGAGCCAGCTCTCTGCACTTG	0.473													10	100					0	0	0.001855	0	0
LINGO2	158038	broad.mit.edu	37	9	27949742	27949742	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:27949742G>A	uc003zqu.1	-	2	1122	c.928C>T	c.(928-930)CGC>TGC	p.R310C	LINGO2_uc010mjf.1_Missense_Mutation_p.R310C|LINGO2_uc003zqv.1_Missense_Mutation_p.R310C	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	310	LRR 11.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		TCAATGGTGCGAAGCTGGGCC	0.522													14	67					0	0	0.003163	0	0
TAF1L	138474	broad.mit.edu	37	9	32634401	32634401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:32634401C>T	uc003zrg.1	-	1	1267	c.1177G>A	c.(1177-1179)GAA>AAA	p.E393K	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	393					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		ATCACAGGTTCATGTTGTGTC	0.463													24	102					0	0	0.002780	0	0
UNC13B	10497	broad.mit.edu	37	9	35236569	35236569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:35236569C>T	uc003zwq.2	+	4	548	c.256C>T	c.(256-258)CGT>TGT	p.R86C	UNC13B_uc010mkl.1_Missense_Mutation_p.R86C|UNC13B_uc003zwr.2_Missense_Mutation_p.R86C	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	86					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			GAAGACTATTCGTCAGTCGGA	0.498													25	129					0	0	0.007291	0	0
C9orf128	392307	broad.mit.edu	37	9	35826156	35826156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:35826156C>T	uc010mlc.2	-	2	288	c.3G>A	c.(1-3)ATG>ATA	p.M1I	C9orf128_uc003zyj.2_RNA|C9orf128_uc011lpg.1_Missense_Mutation_p.M1I	NM_001012446	NP_001012448	A6H8Z2	CI128_HUMAN	hypothetical protein LOC392307	1											0	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			CATGTGCTTCCATCTAGTGGT	0.507											OREG0019180	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	52					0	0	0.001368	0	0
FRMPD1	22844	broad.mit.edu	37	9	37744484	37744484	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:37744484G>A	uc004aag.1	+	16	2499	c.2455G>A	c.(2455-2457)GGA>AGA	p.G819R	FRMPD1_uc004aah.1_Missense_Mutation_p.G819R	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	819						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		TGGGCCAGATGGAAGACAGCC	0.532													30	75					0	0	0.007291	0	0
ANKRD20A4	728747	broad.mit.edu	37	9	69424032	69424032	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:69424032C>T	uc004afn.2	+	15	2440	c.2328C>T	c.(2326-2328)TTC>TTT	p.F776F	uc010mnx.1_5'Flank	NM_001098805	NP_001092275	Q4UJ75	A20A4_HUMAN	ankyrin repeat domain 20 family, member A4	776	Potential.										0						AGAAAGACTTCGTGCTAGAAG	0.348													40	72					0	0	0.006999	0	0
APBA1	320	broad.mit.edu	37	9	72082853	72082853	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:72082853G>A	uc004ahh.2	-	5	1644	c.1368C>T	c.(1366-1368)ATC>ATT	p.I456I		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	456					axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						TGATTCCATCGATCAAGTCTT	0.562													49	142					0	0	0.003610	0	0
RORB	6096	broad.mit.edu	37	9	77257548	77257548	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:77257548T>G	uc004aji.2	+	4	536	c.487T>G	c.(487-489)TCT>GCT	p.S163A	RORB_uc004ajh.2_Missense_Mutation_p.S152A	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	163	Hinge (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						CCTGCCCAAGTCTGAGGGTTA	0.517													10	45					0	0	0.006214	0	0
RORB	6096	broad.mit.edu	37	9	77275589	77275589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:77275589G>A	uc004aji.2	+	5	776	c.727G>A	c.(727-729)GAA>AAA	p.E243K	RORB_uc004ajh.2_Missense_Mutation_p.E232K	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	243	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						ATACACCATGGAAGAGCTGCA	0.403													15	88					0	0	0.002450	0	0
TRPM6	140803	broad.mit.edu	37	9	77376996	77376996	+	Missense_Mutation	SNP	G	A	A	rs141526694	byFrequency	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:77376996G>A	uc004ajl.1	-	26	4829	c.4591C>T	c.(4591-4593)CGC>TGC	p.R1531C	TRPM6_uc004ajk.1_Missense_Mutation_p.R1526C|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.R487C	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1531	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CTGTATCTGCGGAGAGGATTG	0.423													17	57					0	0	0.004990	0	0
PRUNE2	158471	broad.mit.edu	37	9	79325624	79325624	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:79325624G>A	uc010mpk.2	-	8	1690	c.1566C>T	c.(1564-1566)TTC>TTT	p.F522F		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	522					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CACTGTTGGGGAAGAAGTCAT	0.507													4	16					0	0	0.000602	0	0
GKAP1	80318	broad.mit.edu	37	9	86383828	86383828	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:86383828C>T	uc004amy.2	-	8	1139	c.643G>A	c.(643-645)GAT>AAT	p.D215N	GKAP1_uc004amz.2_Intron|GKAP1_uc011lsu.1_RNA	NM_025211	NP_079487	Q5VSY0	GKAP1_HUMAN	G kinase anchoring protein 1 isoform a	215					signal transduction	Golgi apparatus					0						TGAACATCATCTTCCAGTCTA	0.338													10	44					0	0	0.008291	0	0
GOLM1	51280	broad.mit.edu	37	9	88650316	88650316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:88650316C>T	uc004aol.2	-	8	1180	c.982G>A	c.(982-984)GGA>AGA	p.G328R	GOLM1_uc004aom.2_Missense_Mutation_p.G328R	NM_016548	NP_057632	Q8NBJ4	GOLM1_HUMAN	golgi membrane protein 1	328	Lumenal (Potential).					Golgi apparatus|integral to plasma membrane					0						TCCTCCTGTCCGTCGGGGATG	0.637											OREG0019278	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	71					0	0	0.001523	0	0
C9orf79	286234	broad.mit.edu	37	9	90502479	90502479	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:90502479G>A	uc004app.3	+	4	3112	c.3077G>A	c.(3076-3078)TGG>TAG	p.W1026*		NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	1026						integral to membrane				ovary(3)	3						GGGTCCCAGTGGGCAAGGGCT	0.592													13	38					0	0	0.001368	0	0
WNK2	65268	broad.mit.edu	37	9	96030989	96030990	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:96030989_96030990CC>AA	uc004ati.1	+	18	3994_3995	c.3994_3995CC>AA	c.(3994-3996)CCA>AAA	p.P1332K	WNK2_uc011lud.1_Missense_Mutation_p.P1332K|WNK2_uc004atj.2_Missense_Mutation_p.P1332K|WNK2_uc004atk.2_Missense_Mutation_p.P969K	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1332					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						ATCTTCGCCCCCACTTCCTCTA	0.619													6	14					0	0	0.004672	0	0
GABBR2	9568	broad.mit.edu	37	9	101125068	101125068	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:101125068C>T	uc004ays.2	-	13	1978	c.1822G>A	c.(1822-1824)GAC>AAC	p.D608N		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	608	Helical; Name=4; (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	ATACACAGGTCGATCAGCAGC	0.587													8	38					0	0	0.003080	0	0
GABBR2	9568	broad.mit.edu	37	9	101258747	101258747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:101258747G>A	uc004ays.2	-	4	836	c.680C>T	c.(679-681)TCA>TTA	p.S227L		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	227	Extracellular (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	CTCGGTGTCTGAAATCTCAAT	0.537													9	62					0	0	0.006214	0	0
LPPR1	54886	broad.mit.edu	37	9	104079760	104079760	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:104079760G>A	uc004bbb.2	+	7	1326	c.927G>A	c.(925-927)CTG>CTA	p.L309L	LPPR1_uc011lvi.1_Silent_p.L285L|LPPR1_uc004bbc.2_Silent_p.L309L|LPPR1_uc010mtc.2_Silent_p.L293L	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	309						integral to membrane	catalytic activity				0						AAAGCCCTCTGGAAACCTTAA	0.458													29	126					0	0	0.008361	0	0
OR13C9	286362	broad.mit.edu	37	9	107380371	107380371	+	Missense_Mutation	SNP	G	A	A	rs150686997	byFrequency	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:107380371G>A	uc011lvr.1	-	1	115	c.115C>T	c.(115-117)CTT>TTT	p.L39F		NM_001001956	NP_001001956	Q8NGT0	O13C9_HUMAN	olfactory receptor, family 13, subfamily C,	39	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTCCCCAGAAGGATGACCACA	0.433													9	64					0	0	0.008291	0	0
AKNA	80709	broad.mit.edu	37	9	117106021	117106021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:117106021G>A	uc004biq.3	-	18	3859	c.3724C>T	c.(3724-3726)CCC>TCC	p.P1242S	AKNA_uc004bin.3_Missense_Mutation_p.P489S|AKNA_uc004bio.3_Missense_Mutation_p.P702S|AKNA_uc004bip.3_Missense_Mutation_p.P1161S|AKNA_uc004bir.3_Missense_Mutation_p.P1242S|AKNA_uc004bis.3_Missense_Mutation_p.P1242S|AKNA_uc010mve.2_Missense_Mutation_p.P1123S	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	1242					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						CGGCAGTGGGGACAGGAGACT	0.582													14	48					0	0	0.004990	0	0
PAPPA	5069	broad.mit.edu	37	9	118949433	118949433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:118949433G>A	uc004bjn.2	+	2	797	c.416G>A	c.(415-417)GGG>GAG	p.G139E	PAPPA_uc011lxp.1_5'UTR|PAPPA_uc011lxq.1_5'UTR	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	139					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GGCCACATAGGGCTGTATGAC	0.413													13	45					0	0	0.001368	0	0
TLR4	7099	broad.mit.edu	37	9	120470847	120470847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:120470847C>T	uc004bjz.2	+	2	391	c.100C>T	c.(100-102)CCT>TCT	p.P34S	TLR4_uc004bka.2_5'UTR|TLR4_uc004bkb.2_Intron	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	34	Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						GCAGGTGGTTCCTAATATTAC	0.463													16	53					0	0	0.004007	0	0
TLR4	7099	broad.mit.edu	37	9	120475079	120475079	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:120475079G>A	uc004bjz.2	+	3	964	c.673G>A	c.(673-675)GAA>AAA	p.E225K	TLR4_uc004bka.2_Missense_Mutation_p.E185K|TLR4_uc004bkb.2_Missense_Mutation_p.E25K	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	225	LRR 7.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						TGCATTTAAAGAAATTAGGCT	0.373													12	48					0	0	0.000978	0	0
DBC1	1620	broad.mit.edu	37	9	121976369	121976369	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:121976369G>A	uc004bkc.2	-	6	1206	c.750C>T	c.(748-750)ATC>ATT	p.I250I	DBC1_uc004bkd.2_Silent_p.I250I	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	250	MACPF.				cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						CATTGCACATGATATAGCTCA	0.512													13	54					0	0	0.001368	0	0
DBC1	1620	broad.mit.edu	37	9	122075489	122075489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:122075489G>A	uc004bkc.2	-	2	601	c.145C>T	c.(145-147)CAC>TAC	p.H49Y	DBC1_uc004bkd.2_Missense_Mutation_p.H49Y	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	49					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						CTGGAGTGGTGGAAAGGCCCC	0.502													20	51					0	0	0.007413	0	0
OR1N2	138882	broad.mit.edu	37	9	125315479	125315479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:125315479G>A	uc011lyx.1	+	1	31	c.31G>A	c.(31-33)GAA>AAA	p.E11K		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						CAGATCACACGAACTACAAGG	0.343													17	43					0	0	0.004007	0	0
BAT2L1	84726	broad.mit.edu	37	9	134350720	134350720	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:134350720C>T	uc004can.3	+	15	3259	c.3204C>T	c.(3202-3204)GGC>GGT	p.G1068G	BAT2L1_uc010mzj.1_Silent_p.G651G|BAT2L1_uc004cao.3_Silent_p.G426G	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	1068							protein binding				0						GGGGCCGGGGCCGTGGTTTCA	0.607													5	43					0	0	0.000602	0	0
SARDH	1757	broad.mit.edu	37	9	136550345	136550345	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:136550345G>A	uc004cep.3	-	17	2267	c.2133C>T	c.(2131-2133)ACC>ACT	p.T711T	SARDH_uc004ceo.2_Silent_p.T711T|SARDH_uc011mdn.1_Silent_p.T711T|SARDH_uc011mdo.1_Silent_p.T543T|SARDH_uc004cen.2_Silent_p.T139T	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	711					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		GTAGCTTGTGGGTGGAGAACG	0.637													8	36					0	0	0.006214	0	0
BRD3	8019	broad.mit.edu	37	9	136913572	136913572	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:136913572T>C	uc004cew.2	-	6	907	c.719A>G	c.(718-720)AAG>AGG	p.K240R	BRD3_uc004cex.2_Missense_Mutation_p.K240R	NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	240						nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		CTTCACGCCCTTTTTCTGCGA	0.632			T	NUT|C15orf55	lethal midline carcinoma of young people								3	79					0	0	0.000248	0	0
GLT6D1	360203	broad.mit.edu	37	9	138518016	138518016	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:138518016G>A	uc010nbd.1	-	4	410	c.156C>T	c.(154-156)CTC>CTT	p.L52L		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	52	Lumenal (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		GGACAGGAGCGAGCCAGTCTG	0.532													12	42					0	0	0.001855	0	0
PMPCA	23203	broad.mit.edu	37	9	139306961	139306961	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:139306961G>A	uc004chl.2	+	3	299	c.294G>A	c.(292-294)TCG>TCA	p.S98S	SDCCAG3_uc004chi.2_5'Flank|SDCCAG3_uc004chj.2_5'Flank|SDCCAG3_uc004chk.2_5'Flank|PMPCA_uc011mdy.1_Silent_p.S98S|PMPCA_uc010nbk.2_RNA|PMPCA_uc010nbl.2_5'UTR|PMPCA_uc011mdz.1_5'UTR	NM_015160	NP_055975	Q10713	MPPA_HUMAN	peptidase (mitochondrial processing) alpha	98					proteolysis	mitochondrial inner membrane|mitochondrial matrix	metalloendopeptidase activity|zinc ion binding				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;9.3e-06)|Epithelial(140;1.15e-05)		ATTCAGGATCGAGATATGAAG	0.299													5	32					0	0	0.000602	0	0
RNF208	727800	broad.mit.edu	37	9	140115034	140115034	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:140115034G>A	uc004clz.1	-	1	742	c.631C>T	c.(631-633)CTG>TTG	p.L211L		NM_031297	NP_112587	Q9H0X6	RN208_HUMAN	ring finger protein 208	211							zinc ion binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		AGGCGGCTCAGGATGGACGTG	0.677													3	22					0	0	0.004672	0	0
CACNA1B	774	broad.mit.edu	37	9	140851251	140851251	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr9:140851251G>A	uc004cog.2	+	9	1360	c.1215G>A	c.(1213-1215)AGG>AGA	p.R405R	CACNA1B_uc011mfd.1_5'Flank	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	405	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	AGGAGGACAGGAATGCAGAGG	0.617													14	58					0	0	0.003163	0	0
CRLF2	64109	broad.mit.edu	37	X	1325440	1325440	+	RNA	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:1325440C>T	uc004cpm.1	-	3		c.235G>A						Q9HC73	CRLF2_HUMAN	Homo sapiens mRNA for IL-XR, complete cds.							extracellular region|integral to membrane|plasma membrane	receptor activity			haematopoietic_and_lymphoid_tissue(7)	7		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				GAAGTGTGACCTTCCTGGAGA	0.502			Mis|T	P2RY8|IGH@	B-ALL|Downs associated ALL								11	60					0	0	0.000978	0	0
IL3RA	3563	broad.mit.edu	37	X	1467418	1467418	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:1467418G>A	uc004cps.2	+	4	627	c.278G>A	c.(277-279)TGG>TAG	p.W93*	IL3RA_uc011mhd.1_Intron	NM_002183	NP_002174	P26951	IL3RA_HUMAN	interleukin 3 receptor, alpha precursor	93	Extracellular (Potential).					integral to membrane|plasma membrane	interleukin-3 receptor activity			skin(2)|lung(1)	3		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	TTCTCCACGTGGATCCTCTTC	0.383													55	212					0	0	0.003610	0	0
MXRA5	25878	broad.mit.edu	37	X	3227829	3227829	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:3227829G>A	uc004crg.3	-	7	8572	c.8415C>T	c.(8413-8415)GCC>GCT	p.A2805A		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2805	Ig-like C2-type 12.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TGTAGAAGCCGGCATCTCTCT	0.488													8	15					0	0	0.004482	0	0
MXRA5	25878	broad.mit.edu	37	X	3228250	3228250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:3228250C>T	uc004crg.3	-	7	8151	c.7994G>A	c.(7993-7995)GGG>GAG	p.G2665E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2665	Ig-like C2-type 11.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				ACGTCCCTGCCCAGCCCCGGG	0.587													27	37					0	0	0.008361	0	0
TLR7	51284	broad.mit.edu	37	X	12904184	12904184	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:12904184G>A	uc004cvc.2	+	3	696	c.557G>A	c.(556-558)CGA>CAA	p.R186Q		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	186	LRR 6.|Extracellular (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	TGTTATTATCGAAATCCTTGT	0.388													9	15					0	0	0.004482	0	0
FANCB	2187	broad.mit.edu	37	X	14863068	14863068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:14863068G>A	uc004cwg.1	-	8	2105	c.1837C>T	c.(1837-1839)CGT>TGT	p.R613C	FANCB_uc004cwh.1_Missense_Mutation_p.R613C	NM_001018113	NP_001018123	Q8NB91	FANCB_HUMAN	Fanconi anemia complementation group B	613					DNA repair	nucleoplasm				lung(1)	1	Hepatocellular(33;0.183)					ACAACATAACGATCTTTAGGA	0.353								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				51	60					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	X	48159203	48159203	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:48159203C>T	uc010nib.1	-	6	418	c.331_splice	c.e6-1	p.I111_splice		NM_174962	NP_777622			synovial sarcoma, X breakpoint 9																		TGGGCATGATCTTTATAATGT	0.333													50	97					0	0	0.003610	0	0
CCNB3	85417	broad.mit.edu	37	X	50052722	50052722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:50052722C>T	uc004dox.3	+	6	1851	c.1553C>T	c.(1552-1554)TCA>TTA	p.S518L	CCNB3_uc004doy.2_Missense_Mutation_p.S518L|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	518					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					GGAGAAAAGTCACTTATTAAG	0.408													7	11					0	0	0.001984	0	0
HDAC8	55869	broad.mit.edu	37	X	71549926	71549926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:71549926C>T	uc004eau.2	-	11	1154	c.1112G>A	c.(1111-1113)GGG>GAG	p.G371E	HDAC8_uc011mqe.1_Missense_Mutation_p.G228E|HDAC8_uc011mqf.1_Missense_Mutation_p.G176E|HDAC8_uc011mqg.1_Missense_Mutation_p.G280E	NM_018486	NP_060956	Q9BY41	HDAC8_HUMAN	histone deacetylase 8	371					chromatin assembly or disassembly|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|nuclear chromosome	histone deacetylase activity (H3-K16 specific)|metal ion binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription factor binding				0	Renal(35;0.156)				Vorinostat(DB02546)	CTTCAGATTCCCTGCAAACAG	0.333													10	21					0	0	0.000978	0	0
NAP1L2	4674	broad.mit.edu	37	X	72433461	72433461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:72433461G>A	uc004ebi.2	-	1	1224	c.868C>T	c.(868-870)CAC>TAC	p.H290Y	NAP1L2_uc011mqj.1_Missense_Mutation_p.H148Y	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	290					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					GGTTTGAAGTGAAATTCTAGT	0.383													13	18					0	0	0.001368	0	0
KIAA2022	340533	broad.mit.edu	37	X	73959290	73959290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:73959290C>T	uc004eby.2	-	4	5118	c.4501G>A	c.(4501-4503)GTT>ATT	p.V1501I		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1501					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						ACAGGTAAAACCCAAAAGGTT	0.358													4	10					0	0	0.000248	0	0
LPAR4	2846	broad.mit.edu	37	X	78011344	78011344	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:78011344C>T	uc010nme.2	+	2	1383	c.978C>T	c.(976-978)GCC>GCT	p.A326A		NM_005296	NP_005287	Q99677	LPAR4_HUMAN	lysophosphatidic acid receptor 4	326	Cytoplasmic (Potential).					integral to plasma membrane	lipid binding|purinergic nucleotide receptor activity, G-protein coupled			ovary(3)	3						ACATCAATGCCCACATCAGAA	0.423													13	32					0	0	0.003163	0	0
TBX22	50945	broad.mit.edu	37	X	79286045	79286045	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:79286045C>G	uc010nmg.1	+	9	1132	c.998C>G	c.(997-999)TCT>TGT	p.S333C	TBX22_uc004edi.1_Missense_Mutation_p.S213C|TBX22_uc004edj.1_Missense_Mutation_p.S333C	NM_001109878	NP_001103348	Q9Y458	TBX22_HUMAN	T-box 22 isoform 1	333					multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(7)|large_intestine(3)|central_nervous_system(2)|breast(1)|skin(1)|ovary(1)	15						GGGGCCCCCTCTCCTTTGAAC	0.468													16	24					0	0	0.003163	0	0
PCDH11X	27328	broad.mit.edu	37	X	91090780	91090780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:91090780C>T	uc004efk.1	+	1	1122	c.277C>T	c.(277-279)CGT>TGT	p.R93C	PCDH11X_uc004efl.1_Missense_Mutation_p.R93C|PCDH11X_uc004efo.1_Missense_Mutation_p.R93C|PCDH11X_uc010nmv.1_Missense_Mutation_p.R93C|PCDH11X_uc004efm.1_Missense_Mutation_p.R93C|PCDH11X_uc004efn.1_Missense_Mutation_p.R93C|PCDH11X_uc004efh.1_Missense_Mutation_p.R93C|PCDH11X_uc004efj.1_Missense_Mutation_p.R93C	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	93	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						TCGCATTGATCGTGAGAAATT	0.443													41	78					0	0	0.002222	0	0
GLRA4	441509	broad.mit.edu	37	X	102974111	102974111	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:102974111G>A	uc011mse.1	-	7	1228	c.807C>T	c.(805-807)ATC>ATT	p.I269I	GLRA4_uc010nou.2_Silent_p.I269I	NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	269	Helical; (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						ACAGGATGACGATGAGTAGGC	0.557													40	55					0	0	0.002522	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106116850	106116850	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:106116850C>T	uc004emo.2	+	21	3183	c.3018C>T	c.(3016-3018)GAC>GAT	p.D1006D	MORC4_uc004emp.3_Intron	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	1006						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TTCATGAGGACCCTGAAGAAG	0.363													11	39					0	0	0.008291	0	0
COL4A5	1287	broad.mit.edu	37	X	107842027	107842027	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:107842027C>T	uc004enz.1	+	25	2077	c.1875C>T	c.(1873-1875)TTC>TTT	p.F625F	COL4A5_uc011mso.1_Silent_p.F625F|COL4A5_uc004eob.1_Silent_p.F233F	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	625	Triple-helical region.			FGPP -> LALQ (in Ref. 5; AAA99480).	axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						CCCCTGGTTTCGGCCCTCCAG	0.512									Alport_syndrome_with_Diffuse_Leiomyomatosis				28	30					0	0	0.004656	0	0
CAPN6	827	broad.mit.edu	37	X	110494857	110494857	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:110494857G>A	uc004epc.1	-	6	981	c.813C>T	c.(811-813)GTC>GTT	p.V271V	CAPN6_uc011msu.1_Silent_p.V16V	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	271	Calpain catalytic.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						CAGCACTGAAGACTTCCACAA	0.478													77	128					0	0	0.003610	0	0
KLHL13	90293	broad.mit.edu	37	X	117043590	117043590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:117043590C>T	uc004eql.2	-	5	1102	c.1040G>A	c.(1039-1041)GGA>GAA	p.G347E	KLHL13_uc004eqk.2_Missense_Mutation_p.G296E|KLHL13_uc011mtn.1_Missense_Mutation_p.G187E|KLHL13_uc011mto.1_Missense_Mutation_p.G341E|KLHL13_uc011mtp.1_Missense_Mutation_p.G349E|KLHL13_uc004eqm.2_Missense_Mutation_p.G296E|KLHL13_uc011mtq.1_Missense_Mutation_p.G331E	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	347	Kelch 1.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						CCTCAGCACTCCTCCTAGTGT	0.498													11	43					0	0	0.000978	0	0
ATP1B4	23439	broad.mit.edu	37	X	119504679	119504679	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:119504679G>A	uc004esr.2	+	3	522	c.438G>A	c.(436-438)ACG>ACA	p.T146T	ATP1B4_uc004esq.2_Silent_p.T142T|ATP1B4_uc011mtx.1_Silent_p.T111T|ATP1B4_uc011mty.1_Intron	NM_001142447	NP_001135919	Q9UN42	AT1B4_HUMAN	ATPase, (Na+)/K+ transporting, beta 4	146	Perinuclear space (Potential).				ATP biosynthetic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to plasma membrane|nuclear inner membrane	sodium:potassium-exchanging ATPase activity			ovary(1)|skin(1)	2						CAACCTTCACGGAGCGGGTAA	0.478													53	93					0	0	0.003610	0	0
ODZ1	10178	broad.mit.edu	37	X	123657419	123657419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:123657419G>A	uc004euj.2	-	17	2892	c.2828C>T	c.(2827-2829)CCT>CTT	p.P943L	ODZ1_uc011muj.1_Missense_Mutation_p.P942L|ODZ1_uc010nqy.2_Missense_Mutation_p.P943L	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	943	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						AGGCAGGAAAGGGGATCGGTC	0.453													20	15					0	0	0.007413	0	0
ODZ1	10178	broad.mit.edu	37	X	123805563	123805563	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:123805563C>T	uc004euj.2	-	6	1202	c.1138G>A	c.(1138-1140)GGA>AGA	p.G380R	ODZ1_uc011muj.1_Missense_Mutation_p.G379R|ODZ1_uc010nqy.2_Missense_Mutation_p.G380R	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	380	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						GAAACTTTTCCTCCAATTGGA	0.403													34	37					0	0	0.004289	0	0
IGSF1	3547	broad.mit.edu	37	X	130419974	130419974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:130419974G>A	uc004ewd.2	-	4	384	c.146C>T	c.(145-147)GCC>GTC	p.A49V	IGSF1_uc004ewe.3_Missense_Mutation_p.A38V|IGSF1_uc004ewf.2_Missense_Mutation_p.A29V|IGSF1_uc004ewg.2_Missense_Mutation_p.A49V	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	49	Ig-like C2-type 1.|Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						CTCCCAAGGGGCCTGGGGGTA	0.527													22	48					0	0	0.003330	0	0
USP26	83844	broad.mit.edu	37	X	132160265	132160265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:132160265C>T	uc010nrm.1	-	6	2454	c.1984G>A	c.(1984-1986)GAA>AAA	p.E662K	USP26_uc011mvf.1_Missense_Mutation_p.E662K	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	662					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					GAGGTATCTTCCAGATACGTC	0.428													15	21					0	0	0.004990	0	0
PLAC1	10761	broad.mit.edu	37	X	133700464	133700464	+	Silent	SNP	C	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:133700464C>T	uc004exo.1	-	3	535	c.249G>A	c.(247-249)AGG>AGA	p.R83R	PLAC1_uc004exp.1_Silent_p.R83R	NM_021796	NP_068568	Q9HBJ0	PLAC1_HUMAN	placenta-specific 1 precursor	83					placenta development	extracellular region				pancreas(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CAGCTTTGGCCCTGATGCCAC	0.502													38	48					0	0	0.006999	0	0
AFF2	2334	broad.mit.edu	37	X	148037328	148037328	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:148037328G>A	uc004fcp.2	+	11	2232	c.1753G>A	c.(1753-1755)GAA>AAA	p.E585K	AFF2_uc004fcq.2_Missense_Mutation_p.E575K|AFF2_uc004fcr.2_Missense_Mutation_p.E546K|AFF2_uc011mxb.1_Missense_Mutation_p.E550K|AFF2_uc004fcs.2_Missense_Mutation_p.E552K|AFF2_uc011mxc.1_Missense_Mutation_p.E226K	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	585					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					TGAACCCAAAGAAAGGCCTCT	0.483													45	60					0	0	0.002222	0	0
CNGA2	1260	broad.mit.edu	37	X	150909266	150909266	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:150909266G>A	uc004fey.1	+	5	599	c.375G>A	c.(373-375)AAG>AAA	p.K125K		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	125	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GTCTTCTCAGGAAGAAATTTG	0.507													27	46					0	0	0.005443	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092868	151092868	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:151092868G>A	uc004fez.2	+	3	888	c.732G>A	c.(730-732)AGG>AGA	p.R244R	MAGEA4_uc004ffa.2_Silent_p.R244R|MAGEA4_uc004ffb.2_Silent_p.R244R|MAGEA4_uc004ffc.2_Silent_p.R244R|MAGEA4_uc004ffd.2_Silent_p.R244R	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	244	MAGE.						protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGGAGCCCAGGAAACTGCTCA	0.592													22	43					0	0	0.002299	0	0
GABRE	2564	broad.mit.edu	37	X	151128324	151128324	+	Silent	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:151128324G>A	uc004ffi.2	-	6	825	c.771C>T	c.(769-771)ATC>ATT	p.I257I	GABRE_uc011myd.1_RNA|GABRE_uc011mye.1_RNA|MIR224_hsa-mir-224|MI0000301_5'Flank|MIR452_hsa-mir-452|MI0001733_5'Flank	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	257	Helical; (Potential).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTGGGGTTGTGATTATTTCAG	0.453													17	17					0	0	0.007413	0	0
GABRE	2564	broad.mit.edu	37	X	151128326	151128326	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:151128326T>A	uc004ffi.2	-	6	823	c.769A>T	c.(769-771)ATC>TTC	p.I257F	GABRE_uc011myd.1_RNA|GABRE_uc011mye.1_RNA|MIR224_hsa-mir-224|MI0000301_5'Flank|MIR452_hsa-mir-452|MI0001733_5'Flank	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	257	Helical; (Potential).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GGGGTTGTGATTATTTCAGTT	0.448													17	17					0	0	0.007413	0	0
MIR105-1	406897	broad.mit.edu	37	X	151560764	151560764	+	RNA	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:151560764G>A	hsa-mir-105-1|MI0000111	-			c.8G>A			GABRA3_uc010ntk.1_Intron|uc004ffo.2_RNA																	0						ATTTGACCACGATGCACACTC	0.468													10	20					0	0	0.006214	0	0
TBL1Y	90665	broad.mit.edu	37	Y	6948886	6948886	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrY:6948886G>A	uc004frb.2	+	14	1716	c.1069G>A	c.(1069-1071)GGA>AGA	p.G357R	TBL1Y_uc004frc.2_Missense_Mutation_p.G357R|TBL1Y_uc004frd.2_Missense_Mutation_p.G357R|TBL1Y_uc011nap.1_Missense_Mutation_p.G199R	NM_033284	NP_150600	Q9BQ87	TBL1Y_HUMAN	transducin beta-like 1Y	357	WD 5.				transcription, DNA-dependent						0						AACCTTCCAGGGACACACAGT	0.488													11	9					0	0	0.000978	0	0
RBMY1A3P	286557	broad.mit.edu	37	Y	9160442	9160442	+	RNA	SNP	A	C	C			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrY:9160442A>C	uc004frl.1	-	1		c.42T>G				NR_001547				Homo sapiens RBMY1A3P pseudogene, mRNA sequence.												0						TTGAGGCCACAAATGAAAAGC	0.313													3	40					0	0	0.001168	0	0
RBMXL1	494115	broad.mit.edu	37	1	89448604	89448605	+	Frame_Shift_Ins	INS	-	GG	GG			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:89448604_89448605insGG	uc009wcx.2	-	3	1621_1622	c.905_906insCC	c.(904-906)CCAfs	p.P302fs	CCBL2_uc001dmp.2_Intron|CCBL2_uc001dmq.2_Intron|CCBL2_uc001dmr.2_Intron|RBMXL1_uc001dms.2_Frame_Shift_Ins_p.P302fs	NM_001162536	NP_001156008	Q96E39	RBMXL_HUMAN	RNA binding motif protein, X-linked-like 1	302	Ser-rich.						nucleotide binding|RNA binding				0						CACCATAAGATGGCGGGGGCCC	0.475													7	210	---	---	---	---					
NOTCH2	4853	broad.mit.edu	37	1	120612003	120612004	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr1:120612003_120612004delGG	uc001eik.2	-	1	273_274	c.17_18delCC	c.(16-18)CCCfs	p.P6fs	NOTCH2_uc001eil.2_Frame_Shift_Del_p.P6fs|NOTCH2_uc001eim.3_5'UTR	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	6					anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACAGCAGAGCGGGGCGCAGGGC	0.663			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				12	52	---	---	---	---					
TPSG1	25823	broad.mit.edu	37	16	1272296	1272304	+	In_Frame_Del	DEL	ACGGAGACT	-	-	rs146081704	byFrequency	TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr16:1272296_1272304delACGGAGACT	uc002ckw.2	-	5	551_559	c.549_557delAGTCTCCGT	c.(547-558)AAAGTCTCCGTG>AAG	p.VSV184del		NM_012467	NP_036599	Q9NRR2	TRYG1_HUMAN	transmembrane tryptase preproprotein	184_186	Peptidase S1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				TGTGTCCACCACGGAGACTTTCACCTCCC	0.699													15	109	---	---	---	---					
POLDIP2	26073	broad.mit.edu	37	17	26684394	26684395	+	Splice_Site	INS	-	G	G	rs113730440		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr17:26684394_26684395insG	uc002haz.2	-	2	210	c.78_splice	c.e2+1	p.W26_splice	POLDIP2_uc010wag.1_RNA|TMEM199_uc002hba.2_5'Flank|SARM1_uc010wah.1_5'Flank	NM_015584	NP_056399	Q9Y2S7	PDIP2_HUMAN	DNA polymerase delta interacting protein 2							mitochondrial nucleoid|nucleus					0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		AGAGCGGCTTTGCCACCGGGCC	0.762													2	4	---	---	---	---					
EPB41L3	23136	broad.mit.edu	37	18	5395607	5395607	+	Splice_Site	DEL	C	-	-			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:5395607delC	uc002kmt.1	-	20	3158	c.3072_splice	c.e20+1	p.K1024_splice	EPB41L3_uc010wzh.1_Splice_Site_p.K855_splice|EPB41L3_uc002kmu.1_Splice_Site_p.K802_splice|EPB41L3_uc010dkq.1_Splice_Site_p.K693_splice|EPB41L3_uc002kms.1_Splice_Site_p.K259_splice|EPB41L3_uc010wze.1_Splice_Site_p.K329_splice|EPB41L3_uc010wzf.1_Splice_Site_p.K321_splice|EPB41L3_uc010wzg.1_Splice_Site_p.K296_splice|EPB41L3_uc010dkr.2_Splice_Site_p.K416_splice	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3						cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						ACTCCACTTACTTTGGTGATG	0.542													46	160	---	---	---	---					
KCNG2	26251	broad.mit.edu	37	18	77623691	77623692	+	In_Frame_Ins	INS	-	GGC	GGC	rs71338073		TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr18:77623691_77623692insGGC	uc010xfl.1	+	1	24_25	c.24_25insGGC	c.(22-27)insGGC	p.13_14insG		NM_012283	NP_036415	Q9UJ96	KCNG2_HUMAN	potassium voltage-gated channel, subfamily G,	13_14	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of heart contraction|regulation of insulin secretion	voltage-gated potassium channel complex	delayed rectifier potassium channel activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;6.92e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0244)		CCTGCTccccgggcggcggcgg	0.614													4	3	---	---	---	---					
C19orf28	126321	broad.mit.edu	37	19	3542858	3542859	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:3542858_3542859insG	uc002lxw.2	-	10	1707_1708	c.1537_1538insC	c.(1537-1539)CTGfs	p.L513fs	C19orf28_uc002lxx.2_Intron|C19orf28_uc010dtl.1_5'Flank|C19orf71_uc010xhm.1_Intron	NM_021731	NP_068377	Q6NUT3	CS028_HUMAN	hypothetical protein LOC126321 isoform a	Error:Variant_position_missing_in_Q6NUT3_after_alignment					transmembrane transport	integral to membrane				breast(1)|pancreas(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00251)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTCCAGGCCAGGGGGGCTTCC	0.554													9	46	---	---	---	---					
COL5A3	50509	broad.mit.edu	37	19	10112552	10112552	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:10112552delG	uc002mmq.1	-	7	941	c.855delC	c.(853-855)TCCfs	p.S285fs		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	285	Nonhelical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GGATGTCAGTGGAGGTCTGGA	0.607											OREG0025228	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	59	---	---	---	---					
ZNF473	25888	broad.mit.edu	37	19	50549329	50549330	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr19:50549329_50549330insT	uc002prn.2	+	5	1866_1867	c.1629_1630insT	c.(1627-1632)GGATTTfs	p.G543fs	ZNF473_uc002prm.2_Frame_Shift_Ins_p.G543fs|ZNF473_uc010ybo.1_Frame_Shift_Ins_p.G531fs	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	543_544	Interaction with SLBP/pre-mRNA complex.				histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		AAAAACAAGGATTTTTTGTGAG	0.446													9	61	---	---	---	---					
PRL	5617	broad.mit.edu	37	6	22287724	22287734	+	Frame_Shift_Del	DEL	ATAATAAGCAG	-	-			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chr6:22287724_22287734delATAATAAGCAG	uc003ndp.2	-	5	1100_1110	c.581_591delCTGCTTATTAT	c.(580-591)TCTGCTTATTATfs	p.S194fs	PRL_uc003ndo.2_Frame_Shift_Del_p.S195fs|PRL_uc003ndq.2_Frame_Shift_Del_p.S194fs	NM_000948	NP_000939	P01236	PRL_HUMAN	prolactin precursor	194_197					cell proliferation|cell surface receptor linked signaling pathway|female pregnancy|lactation|positive regulation of JAK-STAT cascade|regulation of multicellular organism growth	cytosol|extracellular region	hormone activity|prolactin receptor binding				0	Ovarian(93;0.163)					GGAGCAGGTTATAATAAGCAGAAAGGCGAGA	0.460													7	59	---	---	---	---					
S100G	795	broad.mit.edu	37	X	16669137	16669148	+	In_Frame_Del	DEL	CTAAAAAGTCTC	-	-			TCGA-EE-A2MC-06A-12D-A197-08	TCGA-EE-A2MC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f3aeaffa-4945-401e-8d62-6dd7e409850b	c44834c6-cc01-4012-9684-adabd1c3b24b	g.chrX:16669137_16669148delCTAAAAAGTCTC	uc004cxn.1	+	2	62_73	c.8_19delCTAAAAAGTCTC	c.(7-21)ACTAAAAAGTCTCCT>ACT	p.KKSP4del	CTPS2_uc004cxk.2_Intron|CTPS2_uc004cxl.2_Intron|CTPS2_uc004cxm.2_Intron	NM_004057	NP_004048	P29377	S100G_HUMAN	calbindin 3	4_7							calcium ion binding|vitamin D binding				0	Hepatocellular(33;0.0997)					AGAATGAGTACTAAAAAGTCTCCTGAGGAACT	0.382													10	39	---	---	---	---					
