Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ACTRT2	140625	broad.mit.edu	37	1	2938503	2938503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:2938503G>A	uc001ajz.2	+	1	458	c.253G>A	c.(253-255)GAC>AAC	p.D85N		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	85						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		AGGGTGGGATGACGTGGAGAG	0.612000													21	57					0	0	0.012319	0	0
VPS13D	55187	broad.mit.edu	37	1	12460273	12460273	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:12460273C>T	uc001atv.2	+	61	11811	c.11670C>T	c.(11668-11670)TTC>TTT	p.F3890F	VPS13D_uc001atw.2_Silent_p.F3865F|VPS13D_uc001atx.2_Silent_p.F3077F|VPS13D_uc009vnl.2_RNA	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3889					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CGCAGCCCTTCATGCTCTATG	0.493000													35	36					0	0	0.014410	0	0
EPHB2	2048	broad.mit.edu	37	1	23232557	23232557	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:23232557G>A	uc009vqj.1	+	10	1988	c.1843G>A	c.(1843-1845)GAA>AAA	p.E615K	EPHB2_uc001bge.2_Missense_Mutation_p.E616K|EPHB2_uc001bgf.2_Missense_Mutation_p.E615K|EPHB2_uc010odu.1_Missense_Mutation_p.E557K	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	615	Cytoplasmic (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		GTTTGCCAAGGAAATTGACAT	0.537000									Hereditary_Prostate_Cancer				37	40					0	0	0.008740	0	0
GBP2	2634	broad.mit.edu	37	1	89582841	89582841	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:89582841G>A	uc001dmz.1	-	6	973	c.702C>T	c.(700-702)TTC>TTT	p.F234F	GBP2_uc001dmy.1_RNA	NM_004120	NP_004111	P32456	GBP2_HUMAN	guanylate binding protein 2,	234					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)	1		Lung NSC(277;0.0908)		all cancers(265;0.0151)|Epithelial(280;0.0284)		AATCGAAGACGAAGCACTTCC	0.423000													12	36					0	0	0.013537	0	0
CDC14A	8556	broad.mit.edu	37	1	100856301	100856301	+	Nonsense_Mutation	SNP	C	G	G			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:100856301C>G	uc001dtg.3	+	4	718	c.230C>G	c.(229-231)TCA>TGA	p.S77*	CDC14A_uc009web.2_RNA|CDC14A_uc010oui.1_Nonsense_Mutation_p.S19*|CDC14A_uc001dte.3_Nonsense_Mutation_p.S77*|CDC14A_uc001dtf.2_Nonsense_Mutation_p.S77*|CDC14A_uc009wed.1_5'UTR|CDC14A_uc009wee.2_Nonsense_Mutation_p.S77*|CDC14A_uc009wec.1_Nonsense_Mutation_p.S77*	NM_003672	NP_003663	Q9UNH5	CC14A_HUMAN	CDC14 homolog A isoform 1	77	A.				cell cycle|cell division|cell proliferation	centrosome|nucleus|spindle	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			large_intestine(1)	1		all_epithelial(167;3.71e-06)|all_lung(203;0.00097)|Lung NSC(277;0.001)		Epithelial(280;0.0676)|all cancers(265;0.127)|COAD - Colon adenocarcinoma(174;0.201)|Lung(183;0.227)|Colorectal(144;0.241)		TACAGTTTGTCAAGAAAGAAA	0.358000													7	24					0	0	0.003080	0	0
DCLRE1B	64858	broad.mit.edu	37	1	114454474	114454474	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:114454474G>A	uc001eeg.2	+	4	1431	c.1260G>A	c.(1258-1260)AAG>AAA	p.K420K	DCLRE1B_uc001eeh.2_Intron|DCLRE1B_uc001eei.2_Silent_p.K294K	NM_022836	NP_073747	Q9H816	DCR1B_HUMAN	DNA cross-link repair 1B (PSO2 homolog, S.	420					cell cycle checkpoint|DNA repair|protection from non-homologous end joining at telomere|telomeric 3' overhang formation|telomeric loop formation	centrosome|chromosome, telomeric region|nucleus	5'-3' exonuclease activity|protein binding				0	Lung SC(450;0.184)	all_cancers(81;1.46e-05)|all_epithelial(167;2.42e-05)|all_lung(203;0.000353)|Lung NSC(69;0.000518)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGTCTCAAAAGAGGGTGACTA	0.458000								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					37	131					0	0	0.011902	0	0
SELENBP1	8991	broad.mit.edu	37	1	151341502	151341502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:151341502G>A	uc001exx.2	-	4	385	c.338C>T	c.(337-339)CCC>CTC	p.P113L	SELENBP1_uc010pcy.1_Missense_Mutation_p.P155L|SELENBP1_uc001exy.2_Missense_Mutation_p.P9S|SELENBP1_uc001exz.2_Missense_Mutation_p.P9S|SELENBP1_uc010pcz.1_Intron|SELENBP1_uc009wms.2_Missense_Mutation_p.P9S|SELENBP1_uc009wmt.2_Missense_Mutation_p.P9S|SELENBP1_uc001eya.2_Missense_Mutation_p.P49L|SELENBP1_uc009wmu.2_Missense_Mutation_p.P9S	NM_003944	NP_003935	Q13228	SBP1_HUMAN	selenium binding protein 1	113					protein transport	cytosol|membrane|nucleolus	protein binding|selenium binding				0	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TGGGGCCCGGGGCTCAGAGCC	0.607000													32	56					0	0	0.023175	0	0
HRNR	388697	broad.mit.edu	37	1	152191067	152191067	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:152191067C>T	uc001ezt.1	-	3	3114	c.3038G>A	c.(3037-3039)CGA>CAA	p.R1013Q		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1013	12.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGACCCATGTCGGCCACGGCT	0.607000													90	125					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152328282	152328282	+	Silent	SNP	T	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:152328282T>C	uc001ezw.3	-	3	2053	c.1980A>G	c.(1978-1980)TCA>TCG	p.S660S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	660	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GACCTGAGCCTGATCCATATT	0.488000													6	363					0	0	0.003080	0	0
FCRL3	115352	broad.mit.edu	37	1	157660220	157660220	+	Silent	SNP	C	T	T	rs138291587	byFrequency	TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:157660220C>T	uc001frb.2	-	9	1807	c.1515G>A	c.(1513-1515)CCG>CCA	p.P505P	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Silent_p.P505P|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Silent_p.P231P|FCRL3_uc001frc.1_Silent_p.P505P	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	505	Ig-like C2-type 6.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					AGTACAGGATCGGGAAGGAGC	0.607000													28	34					0	0	0.027356	0	0
SPTA1	6708	broad.mit.edu	37	1	158597469	158597469	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:158597469G>A	uc001fst.1	-	40	5809	c.5610C>T	c.(5608-5610)GTC>GTT	p.V1870V		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1870	Spectrin 18.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GGGTCTCATGGACAGCAAAGT	0.398000													40	68					0	0	0.014410	0	0
OR6K6	128371	broad.mit.edu	37	1	158725180	158725180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:158725180C>T	uc001fsw.1	+	1	575	c.575C>T	c.(574-576)TCC>TTC	p.S192F		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	192	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					GCATGGATTTCCACCTTGCCT	0.478000													24	34					0	0	0.021523	0	0
PIGM	93183	broad.mit.edu	37	1	160000335	160000335	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:160000335T>G	uc001fuv.1	-	1	1449	c.1195A>C	c.(1195-1197)ATC>CTC	p.I399L		NM_145167	NP_660150	Q9H3S5	PIGM_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	399	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GAACAATTGATAAGAAGAAAG	0.403000													13	68					0	0	0.028581	0	0
VANGL2	57216	broad.mit.edu	37	1	160385937	160385937	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:160385937C>T	uc001fwb.1	+	4	456	c.157C>T	c.(157-159)CTG>TTG	p.L53L	VANGL2_uc001fwc.1_Silent_p.L53L	NM_020335	NP_065068	Q9ULK5	VANG2_HUMAN	vang-like 2	53	Cytoplasmic (Potential).				apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				ovary(1)	1	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CGGGGAGCCCCTGCTGGACAA	0.667000													4	86					0	0	0.001984	0	0
KLHL20	27252	broad.mit.edu	37	1	173702872	173702872	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:173702872G>A	uc001gjc.2	+	3	223	c.44G>A	c.(43-45)GGA>GAA	p.G15E	KLHL20_uc010pmr.1_Intron|KLHL20_uc009wwf.2_5'UTR|KLHL20_uc001gjd.2_Missense_Mutation_p.G15E	NM_014458	NP_055273	Q9Y2M5	KLH20_HUMAN	kelch-like 20	15					cytoskeleton organization|negative regulation of apoptosis|proteasomal ubiquitin-dependent protein catabolic process|response to interferon-alpha	actin cytoskeleton|cell surface|Cul3-RING ubiquitin ligase complex|Golgi apparatus|perinuclear region of cytoplasm|PML body	actin binding|interferon-gamma binding|ubiquitin-protein ligase activity			ovary(1)	1						ATTCGACCAGGAGAGACTGGA	0.478000													27	56					0	0	0.013726	0	0
TNR	7143	broad.mit.edu	37	1	175332892	175332892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:175332892G>A	uc001gkp.1	-	11	2740	c.2659C>T	c.(2659-2661)CCT>TCT	p.P887S	TNR_uc009wwu.1_Missense_Mutation_p.P887S	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	887	Fibronectin type-III 7.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GATGCAACAGGAGGGCTCCAG	0.428000													32	56					0	0	0.015359	0	0
TNR	7143	broad.mit.edu	37	1	175375841	175375841	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:175375841C>T	uc001gkp.1	-	1	91	c.10G>A	c.(10-12)GAT>AAT	p.D4N	TNR_uc009wwu.1_Missense_Mutation_p.D4N|TNR_uc010pmz.1_Missense_Mutation_p.D4N	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	4					axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GTTTCCCCATCTGCCCCCATC	0.532000													46	70					0	0	0.014410	0	0
TOR1AIP1	26092	broad.mit.edu	37	1	179870514	179870514	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:179870514G>C	uc001gnq.2	+	5	948	c.730G>C	c.(730-732)GAA>CAA	p.E244Q	TOR1AIP1_uc001gnp.1_Missense_Mutation_p.E245Q	NM_015602	NP_056417	Q5JTV8	TOIP1_HUMAN	lamina-associated polypeptide 1B	244	Nuclear (Potential).					integral to membrane|nuclear inner membrane				breast(1)|central_nervous_system(1)	2						GGATTCTGATGAATCTGGAGG	0.323000													8	27					0	0	0.006214	0	0
GLUL	2752	broad.mit.edu	37	1	182356327	182356327	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:182356327G>T	uc001gpa.1	-	3	479	c.267C>A	c.(265-267)TTC>TTA	p.F89L	GLUL_uc010pnt.1_5'Flank|GLUL_uc001gpb.1_Missense_Mutation_p.F89L|GLUL_uc001gpc.1_Missense_Mutation_p.F89L|GLUL_uc001gpd.1_Missense_Mutation_p.F89L	NM_001033056	NP_001028228	P15104	GLNA_HUMAN	glutamine synthetase	89					cell proliferation|glutamine biosynthetic process|neurotransmitter uptake	cytosol|Golgi apparatus|mitochondrion	ATP binding|glutamate decarboxylase activity|glutamate-ammonia ligase activity|identical protein binding				0					Asparaginase(DB00023)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)|L-Methionine(DB00134)	GGTCCTTACGGAAGGGGTCCC	0.483000													38	53					7.53189e-24	8.00068e-24	0.007835	1	0
FAM5C	339479	broad.mit.edu	37	1	190068164	190068164	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:190068164G>A	uc001gse.1	-	8	1517	c.1285C>T	c.(1285-1287)CCG>TCG	p.P429S	FAM5C_uc010pot.1_Missense_Mutation_p.P327S	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	429						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					TGGTCATTCGGACACGTGCAC	0.592000													13	17					0	0	0.024245	0	0
CFHR4	10877	broad.mit.edu	37	1	196883755	196883755	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:196883755C>T	uc001gto.2	+	4	639	c.570C>T	c.(568-570)TCC>TCT	p.S190S	CFHR4_uc009wyy.2_Silent_p.S436S|CFHR4_uc001gtp.2_Silent_p.S437S	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	190	Sushi 3.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						CCACAGGTTCCATAGTGTGTG	0.368000													25	40					0	0	0.006320	0	0
CHI3L1	1116	broad.mit.edu	37	1	203148906	203148906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:203148906C>T	uc001gzi.2	-	9	1165	c.994G>A	c.(994-996)GAA>AAA	p.E332K	FMOD_uc010pqi.1_Intron|CHI3L1_uc001gzk.1_Missense_Mutation_p.E68K|CHI3L1_uc001gzj.2_Missense_Mutation_p.E271K|CHI3L1_uc001gzl.3_5'Flank	NM_001276	NP_001267	P36222	CH3L1_HUMAN	chitinase 3-like 1 precursor	332					chitin catabolic process	extracellular space|proteinaceous extracellular matrix	cation binding|chitinase activity|extracellular matrix structural constituent|sugar binding			pancreas(1)	1						TTGACGCTTTCCTGGTCGTCG	0.582000													47	71					0	0	0.014410	0	0
MDM4	4194	broad.mit.edu	37	1	204513760	204513760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:204513760C>T	uc001hba.2	+	9	932	c.770C>T	c.(769-771)GCT>GTT	p.A257V	MDM4_uc001hbd.1_RNA|MDM4_uc010pqw.1_Intron|MDM4_uc010pqx.1_Missense_Mutation_p.A130V|MDM4_uc001hay.1_Intron|MDM4_uc001hbb.2_Missense_Mutation_p.A130V|MDM4_uc010pqy.1_Intron|MDM4_uc001hbc.2_RNA|MDM4_uc009xbe.1_RNA	NM_002393	NP_002384	O15151	MDM4_HUMAN	mouse double minute 4 homolog	257	Region II.|Asp/Glu-rich (acidic).				apoptosis|cell proliferation|cellular response to hypoxia|G0 to G1 transition|negative regulation of apoptosis|negative regulation of cell cycle arrest|negative regulation of cell proliferation|negative regulation of protein catabolic process|negative regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization	nucleus	enzyme binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(21;0.00146)|all_neural(3;0.0218)|Glioma(3;0.0382)|Breast(84;0.112)|all_epithelial(62;0.118)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;3.15e-47)|all cancers(3;3.56e-32)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|Epithelial(59;0.143)|BRCA - Breast invasive adenocarcinoma(75;0.143)			AAAGTTGAAGCTGCTGATACT	0.378000			A		GBM|bladder|retinoblastoma								16	25					0	0	0.007413	0	0
TP53BP2	7159	broad.mit.edu	37	1	223987607	223987607	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:223987607A>C	uc010pvb.1	-	11	1771	c.1479T>G	c.(1477-1479)GAT>GAG	p.D493E	TP53BP2_uc001hod.2_Missense_Mutation_p.D364E|TP53BP2_uc010puz.1_5'UTR|TP53BP2_uc010pva.1_Missense_Mutation_p.D132E	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	487					apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		GTACCTGAGCATCCCGCAAGA	0.413000													22	29					0	0	0.024334	0	0
WNT9A	7483	broad.mit.edu	37	1	228109590	228109590	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:228109590G>C	uc001hri.2	-	4	815	c.727C>G	c.(727-729)CTG>GTG	p.L243V		NM_003395	NP_003386	O14904	WNT9A_HUMAN	wingless-type MMTV integration site family,	243					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|cornea development in camera-type eye|embryonic arm morphogenesis|embryonic skeletal joint morphogenesis|endoderm development|iris morphogenesis|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|neuron differentiation|positive regulation of smoothened signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding|signal transducer activity			central_nervous_system(1)|pancreas(1)	2		Prostate(94;0.0405)				TTGTGCTTCAGATGCTTGCCC	0.652000													24	99					0	0	0.007291	0	0
OBSCN	84033	broad.mit.edu	37	1	228482117	228482117	+	Splice_Site	SNP	G	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:228482117G>T	uc009xez.1	+	42	11439	c.11395_splice	c.e42+1	p.A3799_splice	OBSCN_uc001hsn.2_Splice_Site_p.A3799_splice|OBSCN_uc001hsq.1_Splice_Site_p.A1055_splice	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and						apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				ACTGTCAGGGGTAAAGATCGT	0.577000													47	89					4.0181e-32	4.28597e-32	0.014410	1	0
CAPN9	10753	broad.mit.edu	37	1	230930937	230930937	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:230930937G>T	uc001htz.1	+	18	2012	c.1899G>T	c.(1897-1899)CAG>CAT	p.Q633H	CAPN9_uc009xfg.1_Missense_Mutation_p.Q570H|CAPN9_uc001hua.1_Missense_Mutation_p.Q607H	NM_006615	NP_006606	O14815	CAN9_HUMAN	calpain 9 isoform 1	633	Domain IV.				digestion|proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)	1	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)				ACCTCCTGCAGCTGATTGTGC	0.592000													24	50					1.1804e-14	1.24868e-14	0.021523	1	0
KIAA1383	54627	broad.mit.edu	37	1	232941651	232941651	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:232941651C>T	uc001hvh.2	+	1	1014	c.882C>T	c.(880-882)TCC>TCT	p.S294S		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	152										ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				CGGCCGCCTCCGGATGCTCCC	0.706000													4	8					0	0	0.009096	0	0
OR2L3	391192	broad.mit.edu	37	1	248224856	248224856	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr1:248224856G>A	uc001idx.1	+	1	873	c.873G>A	c.(871-873)CTG>CTA	p.L291L	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	291	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			TCTATAGCCTGAGGAACAAGG	0.498000													27	38					0	0	0.010818	0	0
DHTKD1	55526	broad.mit.edu	37	10	12149948	12149948	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr10:12149948C>T	uc001ild.3	+	12	2187	c.2088C>T	c.(2086-2088)CTC>CTT	p.L696L		NM_018706	NP_061176	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain	696					glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			ovary(1)|central_nervous_system(1)	2		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			TCGTCATCCTCCTTCCACATG	0.547000													37	22					0	0	0.011902	0	0
PCDH15	65217	broad.mit.edu	37	10	55996643	55996643	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr10:55996643G>A	uc001jju.1	-	9	1320	c.925C>T	c.(925-927)CAG>TAG	p.Q309*	PCDH15_uc010qhq.1_Nonsense_Mutation_p.Q314*|PCDH15_uc010qhr.1_Nonsense_Mutation_p.Q309*|PCDH15_uc010qhs.1_Nonsense_Mutation_p.Q314*|PCDH15_uc010qht.1_Nonsense_Mutation_p.Q309*|PCDH15_uc010qhu.1_Nonsense_Mutation_p.Q309*|PCDH15_uc001jjv.1_Nonsense_Mutation_p.Q287*|PCDH15_uc010qhv.1_Nonsense_Mutation_p.Q309*|PCDH15_uc010qhw.1_Nonsense_Mutation_p.Q272*|PCDH15_uc010qhx.1_Nonsense_Mutation_p.Q309*|PCDH15_uc010qhy.1_Nonsense_Mutation_p.Q314*|PCDH15_uc010qhz.1_Nonsense_Mutation_p.Q309*|PCDH15_uc010qia.1_Nonsense_Mutation_p.Q287*|PCDH15_uc010qib.1_Nonsense_Mutation_p.Q287*|PCDH15_uc001jjw.2_Nonsense_Mutation_p.Q309*	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	309	Cadherin 3.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTCCGGTCCTGATCAATGGCT	0.388000										HNSCC(58;0.16)			63	30					0	0	0.014410	0	0
BICC1	80114	broad.mit.edu	37	10	60546785	60546785	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr10:60546785T>A	uc001jki.1	+	5	490	c.490T>A	c.(490-492)TGC>AGC	p.C164S		NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	164	KH 1.				multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						AGAAACCGGATGCCATATCCA	0.393000													25	12					0	0	0.007291	0	0
GRID1	2894	broad.mit.edu	37	10	87487651	87487651	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr10:87487651G>A	uc001kdl.1	-	10	1595	c.1494C>T	c.(1492-1494)AAC>AAT	p.N498N	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Silent_p.N69N	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	498	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	TCCAGGAGGTGTTATGGAGCT	0.547000										Multiple Myeloma(13;0.14)			31	17					0	0	0.015359	0	0
ADAM12	8038	broad.mit.edu	37	10	127738159	127738159	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr10:127738159C>T	uc001ljk.2	-	15	2111	c.1698G>A	c.(1696-1698)TCG>TCA	p.S566S	ADAM12_uc010qul.1_Silent_p.S517S|ADAM12_uc001ljm.2_Silent_p.S566S|ADAM12_uc001ljn.2_Silent_p.S563S|ADAM12_uc001ljl.3_Silent_p.S563S	NM_003474	NP_003465	O43184	ADA12_HUMAN	ADAM metallopeptidase domain 12 isoform 1	566	Extracellular (Potential).|Cys-rich.				cell adhesion|epidermal growth factor receptor signaling pathway|myoblast fusion|proteolysis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|protein binding|SH3 domain binding|zinc ion binding			breast(4)|ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	9		all_epithelial(44;7.06e-05)|all_lung(145;0.00563)|Lung NSC(174;0.00834)|Colorectal(57;0.102)|all_neural(114;0.107)|Breast(234;0.22)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.216)		AGGAACTCTTCGAGACTTTGC	0.483000													43	29					0	0	0.014410	0	0
VENTX	27287	broad.mit.edu	37	10	135053689	135053689	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr10:135053689C>T	uc010quy.1	+	3	667	c.656C>T	c.(655-657)TCC>TTC	p.S219F		NM_014468	NP_055283	O95231	VENTX_HUMAN	VENT homeobox	219					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(35;4.15e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;7.8e-06)|Epithelial(32;9.31e-06)|all cancers(32;1.19e-05)		GCGGGAGCTTCCTGCTGCGGG	0.716000													8	6					0	0	0.006214	0	0
B4GALNT4	338707	broad.mit.edu	37	11	380422	380422	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr11:380422G>A	uc001lpb.2	+	18	2855	c.2846G>A	c.(2845-2847)GGG>GAG	p.G949E		NM_178537	NP_848632	Q76KP1	B4GN4_HUMAN	beta	949	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			pancreas(1)	1		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CTGAGCTGCGGGAGCTCGCCC	0.697000													17	5					0	0	0.004990	0	0
OR52D1	390066	broad.mit.edu	37	11	5510001	5510001	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr11:5510001G>A	uc010qzg.1	+	1	65	c.65G>A	c.(64-66)GGG>GAG	p.G22E	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005163	NP_001005163	Q9H346	O52D1_HUMAN	olfactory receptor, family 52, subfamily D,	22	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.46e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGGATCCCAGGGCTGGAGGCT	0.493000													61	24					0	0	0.014410	0	0
DNHD1	144132	broad.mit.edu	37	11	6588882	6588882	+	Missense_Mutation	SNP	G	A	A	rs2288284		TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr11:6588882G>A	uc001mdw.3	+	36	12707	c.12143G>A	c.(12142-12144)CGA>CAA	p.R4048Q	DNHD1_uc001mea.3_Missense_Mutation_p.R317Q|DNHD1_uc001meb.2_Missense_Mutation_p.R316Q|DNHD1_uc001mec.2_Missense_Mutation_p.R316Q|DNHD1_uc010rao.1_Missense_Mutation_p.R306Q|DNHD1_uc009yfg.2_5'Flank	NM_144666	NP_653267	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1 isoform 1	4048					microtubule-based movement	dynein complex	microtubule motor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		CGCGTTCTGCGACCTGAGTGC	0.607000													35	10					0	0	0.013726	0	0
DEPDC7	91614	broad.mit.edu	37	11	33053931	33053931	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr11:33053931G>A	uc001mub.2	+	6	1136	c.1044G>A	c.(1042-1044)AAG>AAA	p.K348K	DEPDC7_uc001muc.2_Silent_p.K339K	NM_001077242	NP_001070710	Q96QD5	DEPD7_HUMAN	novel 58.3 KDA protein isoform 1	348					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|skin(1)	2						TCCTTCTAAAGCTTTTAGATT	0.333000													47	11					0	0	0.014410	0	0
PAMR1	25891	broad.mit.edu	37	11	35454038	35454038	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr11:35454038C>T	uc001mwg.2	-	11	2072	c.2029G>A	c.(2029-2031)GCA>ACA	p.A677T	PAMR1_uc001mwf.2_Missense_Mutation_p.A694T|PAMR1_uc010rew.1_Missense_Mutation_p.A566T|PAMR1_uc010rex.1_Missense_Mutation_p.A637T	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	677	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						TCAGGAGATGCTCGTCCCGGG	0.577000													24	69					0	0	0.006320	0	0
LRP4	4038	broad.mit.edu	37	11	46895101	46895101	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr11:46895101G>A	uc001ndn.3	-	29	4419	c.4273C>T	c.(4273-4275)CGA>TGA	p.R1425*	uc001ndl.2_RNA	NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	1425	Extracellular (Potential).|LDL-receptor class B 16.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		TTCAGCCCTCGCCCGATCACT	0.582000													87	37					0	0	0.014410	0	0
OR4C15	81309	broad.mit.edu	37	11	55322738	55322738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr11:55322738C>T	uc010rig.1	+	1	956	c.956C>T	c.(955-957)TCC>TTC	p.S319F		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCTGCTTTTTCCCTTGACAAA	0.403000										HNSCC(20;0.049)			82	40					0	0	0.014410	0	0
GLYATL1	92292	broad.mit.edu	37	11	58715349	58715349	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr11:58715349C>G	uc001nnf.2	+	5	473	c.97C>G	c.(97-99)CAC>GAC	p.H33D	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Missense_Mutation_p.H64D|GLYATL1_uc001nni.1_Missense_Mutation_p.H33D|GLYATL1_uc001nnj.1_Missense_Mutation_p.H33D			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	33						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	CTCTGTGTATCACATCAATCA	0.498000													3	67					0	0	0.009096	0	0
CAPN1	823	broad.mit.edu	37	11	64974144	64974144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr11:64974144G>A	uc009yqd.1	+	13	1675	c.1564G>A	c.(1564-1566)GTG>ATG	p.V522M	CAPN1_uc001odf.1_Missense_Mutation_p.V522M|CAPN1_uc001odg.1_Missense_Mutation_p.V522M|CAPN1_uc010roa.1_Missense_Mutation_p.V263M	NM_005186	NP_005177	P07384	CAN1_HUMAN	calpain 1, large subunit	522	Domain III.				positive regulation of cell proliferation|proteolysis	cytoplasm|plasma membrane	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|protein binding			ovary(1)	1		Lung NSC(402;0.094)|Melanoma(852;0.16)		Lung(977;0.00168)|LUSC - Lung squamous cell carcinoma(976;0.00813)		TGCTGGGACTGTGTGAGTCAT	0.637000													5	26					0	0	0.021553	0	0
MMP27	64066	broad.mit.edu	37	11	102562686	102562686	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr11:102562686C>T	uc001phd.1	-	10	1376	c.1353G>A	c.(1351-1353)AAG>AAA	p.K451K		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	451	Hemopexin-like 4.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		GGGTAATATTCTTTGTCTTAA	0.338000													16	11					0	0	0.004990	0	0
CBL	867	broad.mit.edu	37	11	119155688	119155689	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr11:119155688_119155689CC>TT	uc001pwe.2	+	10	1579_1580	c.1441_1442CC>TT	c.(1441-1443)CCG>TTG	p.P481L		NM_005188	NP_005179	P22681	CBL_HUMAN	Cas-Br-M (murine) ecotropic retroviral	481	Pro-rich.				epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of receptor-mediated endocytosis	cytosol|nucleus	calcium ion binding|sequence-specific DNA binding transcription factor activity|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(135)|lung(10)|central_nervous_system(2)|ovary(1)|breast(1)	149		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.92e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.000784)		GGTGGAACGGCCGCCTTCTCCA	0.505000									CBL_gene-associated_Juvenile_Myelomonocytic_Leukemia_and_Developmental_Anomalies|Noonan_syndrome		OREG0021401	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	46	20					0	0	0.004672	0	0
OR8A1	390275	broad.mit.edu	37	11	124440363	124440363	+	Silent	SNP	A	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr11:124440363A>C	uc010san.1	+	1	399	c.399A>C	c.(397-399)ACA>ACC	p.T133T		NM_001005194	NP_001005194	Q8NGG7	OR8A1_HUMAN	olfactory receptor, family 8, subfamily A,	133	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		ACATGCTGACAGTGATGGCCT	0.478000													11	42					0	0	0.008291	0	0
ST14	6768	broad.mit.edu	37	11	130059763	130059763	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr11:130059763C>T	uc001qfw.2	+	5	763	c.570C>T	c.(568-570)TCC>TCT	p.S190S	ST14_uc010sca.1_5'Flank	NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	190	Extracellular (Potential).				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	CCCTGAAGTCCTTTGTGGTCA	0.682000													42	32					0	0	0.014410	0	0
TAS2R43	259289	broad.mit.edu	37	12	11244556	11244556	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr12:11244556G>A	uc001qzq.1	-	1	357	c.273C>T	c.(271-273)ATC>ATT	p.I91I	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176884	NP_795365	P59537	T2R43_HUMAN	taste receptor, type 2, member 43	91	Helical; Name=3; (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste	cilium membrane|motile cilium	bitter taste receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.0344)	BRCA - Breast invasive adenocarcinoma(232;0.196)		TGAAATGGTTGATCACTGCCC	0.358000													9	52					0	0	0.010729	0	0
RERGL	79785	broad.mit.edu	37	12	18234224	18234224	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr12:18234224C>T	uc001rdq.2	-	6	713	c.519G>A	c.(517-519)CTG>CTA	p.L173L	RERGL_uc001rdr.2_Silent_p.L172L	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	173	Small GTPase-like.				signal transduction	membrane	GTP binding|GTPase activity				0						TGAAGTTTATCAGGATGTCCT	0.398000													10	31					0	0	0.006214	0	0
COL2A1	1280	broad.mit.edu	37	12	48369116	48369116	+	Silent	SNP	G	A	A	rs139957398	byFrequency	TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr12:48369116G>A	uc001rqu.2	-	51	4051	c.3870C>T	c.(3868-3870)CAC>CAT	p.H1290H	COL2A1_uc001rqt.2_Silent_p.H71H|COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Silent_p.H1221H	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	1290	Fibrillar collagen NC1.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	TCCACTCAGGGTGGCAGAGTT	0.602000													7	28					0	0	0.003080	0	0
ITGA5	3678	broad.mit.edu	37	12	54799084	54799084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr12:54799084C>T	uc001sga.2	-	12	1159	c.1091G>A	c.(1090-1092)AGG>AAG	p.R364K	ITGA5_uc010sow.1_RNA|ITGA5_uc009znp.1_RNA	NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	364	Extracellular (Potential).|FG-GAP 5.				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						GACGTAGACCCTGCCCACCTC	0.642000													13	12					0	0	0.007413	0	0
GLI1	2735	broad.mit.edu	37	12	57865815	57865815	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr12:57865815G>C	uc001snx.2	+	12	3370	c.3292G>C	c.(3292-3294)GAA>CAA	p.E1098Q	GLI1_uc009zpq.2_Missense_Mutation_p.E970Q	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	1098					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			CCTACCTGGGGAAACAGAATT	0.522000													24	38					0	0	0.021523	0	0
KIF5A	3798	broad.mit.edu	37	12	57958276	57958276	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr12:57958276C>T	uc001sor.1	+	5	638	c.430C>T	c.(430-432)CGT>TGT	p.R144C	KIF5A_uc010srr.1_Missense_Mutation_p.R55C	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	144	Kinesin-motor.				blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						GGACAAAATTCGTGACCTTCT	0.418000													31	51					0	0	0.013726	0	0
APAF1	317	broad.mit.edu	37	12	99071326	99071326	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr12:99071326A>T	uc001tfz.2	+	13	2494	c.1917A>T	c.(1915-1917)TTA>TTT	p.L639F	APAF1_uc001tfy.2_Missense_Mutation_p.L628F|APAF1_uc001tga.2_Missense_Mutation_p.L628F|APAF1_uc001tgb.2_Missense_Mutation_p.L639F|APAF1_uc001tgc.2_Intron|APAF1_uc009zto.2_Missense_Mutation_p.L48F	NM_181861	NP_863651	O14727	APAF_HUMAN	apoptotic peptidase activating factor 1 isoform	639	WD 1.			L -> F (in Ref. 2; CAB55583).	activation of caspase activity by cytochrome c|defense response|induction of apoptosis by intracellular signals|nervous system development	cytosol|Golgi apparatus|nucleus	ATP binding|caspase activator activity|protein binding			ovary(2)|lung(1)	3					Adenosine triphosphate(DB00171)	ATAAAACCTTACAGGTAAAAC	0.403000													9	46					0	0	0.006214	0	0
VSIG10	54621	broad.mit.edu	37	12	118517408	118517408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr12:118517408G>A	uc001tws.2	-	4	1002	c.668C>T	c.(667-669)CCC>CTC	p.P223L		NM_019086	NP_061959	Q8N0Z9	VSI10_HUMAN	V-set and immunoglobulin domain containing 10	223	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane					0						TGATGGAGGGGGATCTGCAAA	0.562000													40	50					0	0	0.014410	0	0
WDR66	144406	broad.mit.edu	37	12	122437829	122437829	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr12:122437829C>T	uc009zxk.2	+	20	3356	c.3214C>T	c.(3214-3216)CTG>TTG	p.L1072L		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	1072							calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		AGAGGACTTCCTGAGACTGCT	0.502000													14	25					0	0	0.006122	0	0
C1QTNF9	338872	broad.mit.edu	37	13	24890227	24890227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr13:24890227G>A	uc001upj.2	+	2	147	c.86G>A	c.(85-87)GGA>GAA	p.G29E	C1QTNF9_uc001upe.2_RNA	NM_178540	NP_848635	P0C862	C1T9A_HUMAN	C1q and tumor necrosis factor related protein 9	29	Collagen-like 1.					collagen	hormone activity				0		all_cancers(29;3.55e-20)|all_epithelial(30;4.25e-17)|all_lung(29;1.04e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.00565)|Epithelial(112;0.027)|OV - Ovarian serous cystadenocarcinoma(117;0.115)|Lung(94;0.159)		GGGCACCCTGGAATCCCTGGG	0.557000													30	48					0	0	0.010771	0	0
PDS5B	23047	broad.mit.edu	37	13	33327526	33327526	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr13:33327526C>T	uc010abf.2	+	25	2951	c.2793C>T	c.(2791-2793)TCC>TCT	p.S931S	PDS5B_uc010abg.2_RNA	NM_015032	NP_055847	Q9NTI5	PDS5B_HUMAN	PDS5, regulator of cohesion maintenance, homolog	931					cell division|cell proliferation|mitotic sister chromatid cohesion|negative regulation of cell proliferation	chromatin|nucleus	ATP binding|DNA binding|identical protein binding			ovary(2)|lung(1)|pancreas(1)	4		Lung SC(185;0.0367)		all cancers(112;5.55e-06)|Epithelial(112;2.7e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00303)|BRCA - Breast invasive adenocarcinoma(63;0.0204)		AAGGCCTTTCCCGTTTACGGC	0.408000													44	70					0	0	0.014410	0	0
KLHL1	57626	broad.mit.edu	37	13	70413256	70413256	+	Silent	SNP	A	G	G			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr13:70413256A>G	uc001vip.2	-	6	2060	c.1266T>C	c.(1264-1266)AAT>AAC	p.N422N	KLHL1_uc010thm.1_Silent_p.N361N	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	422					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		ATTCCAGATCATTCTTAAATA	0.323000													62	110					0	0	0.014410	0	0
COL4A2	1284	broad.mit.edu	37	13	111137329	111137329	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr13:111137329G>A	uc001vqx.2	+	33	3269	c.2980G>A	c.(2980-2982)GGA>AGA	p.G994R		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	994	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			AGGAGAGAAAGGAGATGAAGG	0.612000													13	16					0	0	0.013537	0	0
TEP1	7011	broad.mit.edu	37	14	20848535	20848535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr14:20848535G>A	uc001vxe.2	-	34	4902	c.4862C>T	c.(4861-4863)CCC>CTC	p.P1621L	TEP1_uc010ahk.2_Missense_Mutation_p.P964L|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.P1513L|TEP1_uc010tlh.1_5'UTR	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1621					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		CAGGAGCCGGGGGTACTGGCT	0.607000													19	68					0	0	0.008871	0	0
OR6S1	341799	broad.mit.edu	37	14	21109263	21109263	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr14:21109263C>T	uc001vxv.1	-	1	588	c.588G>A	c.(586-588)AAG>AAA	p.K196K		NM_001001968	NP_001001968	Q8NH40	OR6S1_HUMAN	olfactory receptor, family 6, subfamily S,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00304)		Epithelial(56;1.23e-06)|all cancers(55;1.01e-05)	GBM - Glioblastoma multiforme(265;0.0135)		CCTCCAGCTTCTTGGTGTTGG	0.562000													23	33					0	0	0.018920	0	0
MYH6	4624	broad.mit.edu	37	14	23867965	23867965	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr14:23867965G>A	uc001wjv.2	-	15	1930	c.1863C>T	c.(1861-1863)CTC>CTT	p.L621L		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	621	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		AGGAGGAGAAGAGAGTGGCCA	0.557000													13	74					0	0	0.020292	0	0
SIX4	51804	broad.mit.edu	37	14	61180600	61180600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr14:61180600G>A	uc001xfc.2	-	3	1871	c.1871C>T	c.(1870-1872)CCC>CTC	p.P624L		NM_017420	NP_059116	Q9UIU6	SIX4_HUMAN	sine oculis homeobox homolog 4	624						nucleus				breast(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0275)		TAGTGTAGAGGGACTGAGAGA	0.478000													5	27					0	0	0.021553	0	0
GPR65	8477	broad.mit.edu	37	14	88477728	88477728	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr14:88477728G>A	uc001xvv.2	+	2	1067	c.537G>A	c.(535-537)TGG>TGA	p.W179*		NM_003608	NP_003599	Q8IYL9	PSYR_HUMAN	G protein-coupled receptor 65	179	Extracellular (Potential).				actin cytoskeleton reorganization|activation of Rho GTPase activity|apoptosis|immune response|multicellular organismal development|positive regulation of cAMP biosynthetic process|positive regulation of stress fiber assembly|response to acidity	integral to plasma membrane	G-protein coupled receptor activity				0						TAGAGAAATGGCAAATCAACC	0.423000													36	48					0	0	0.011902	0	0
TCL1B	9623	broad.mit.edu	37	14	96152839	96152840	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr14:96152839_96152840CC>TT	uc001yez.2	+	1	77_78	c.35_36CC>TT	c.(34-36)CCC>CTT	p.P12L	TCL1B_uc001yew.2_Intron|TCL1B_uc001yex.2_Intron|TCL1B_uc010avj.2_Intron|TCL1B_uc001yfa.2_Missense_Mutation_p.P12L	NM_004918	NP_004909	O95988	TCL1B_HUMAN	T-cell leukemia/lymphoma 1B	12										ovary(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		CTAGGGGTGCCCCCTGGCCGTC	0.609000													42	42					0	0	0.004672	0	0
EML1	2009	broad.mit.edu	37	14	100317273	100317273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr14:100317273G>A	uc001ygs.2	+	2	220	c.151G>A	c.(151-153)GAC>AAC	p.D51N	EML1_uc010avt.1_Missense_Mutation_p.D38N|EML1_uc010tww.1_Missense_Mutation_p.D20N|EML1_uc001ygq.2_Missense_Mutation_p.D51N|EML1_uc001ygr.2_Missense_Mutation_p.D51N	NM_004434	NP_004425	O00423	EMAL1_HUMAN	echinoderm microtubule associated protein like 1	51						cytoplasm|microtubule|microtubule associated complex	calcium ion binding|protein binding			large_intestine(2)|pancreas(1)|ovary(1)|skin(1)	5		Melanoma(154;0.0879)|all_epithelial(191;0.216)				GCAAGAAGACGACATCCAGCT	0.512000													19	35					0	0	0.010504	0	0
ZFYVE21	79038	broad.mit.edu	37	14	104195265	104195265	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr14:104195265T>C	uc001yoc.2	+	4	413	c.379T>C	c.(379-381)TTT>CTT	p.F127L	ZFYVE21_uc001yod.2_Missense_Mutation_p.F127L|ZFYVE21_uc001yoe.2_5'Flank	NM_024071	NP_076976	Q9BQ24	ZFY21_HUMAN	zinc finger, FYVE domain containing 21	127						cytoplasmic membrane-bounded vesicle|focal adhesion	metal ion binding				0		Melanoma(154;0.226)		Epithelial(152;0.245)		CCTCGTCACGTTTGGAAACTC	0.512000													14	36					0	0	0.020292	0	0
TJP1	7082	broad.mit.edu	37	15	30001210	30001210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr15:30001210G>A	uc001zcr.2	-	25	4878	c.4403C>T	c.(4402-4404)TCC>TTC	p.S1468F	TJP1_uc010azl.2_Missense_Mutation_p.S1456F|TJP1_uc001zcq.2_Missense_Mutation_p.S1392F|TJP1_uc001zcs.2_Missense_Mutation_p.S1388F	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	1468					cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		GGACACTAAGGAATTCTGAAA	0.408000													42	23					0	0	0.011902	0	0
HDC	3067	broad.mit.edu	37	15	50544884	50544884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr15:50544884C>T	uc001zxz.2	-	8	981	c.875G>A	c.(874-876)GGG>GAG	p.G292E	HDC_uc001zxy.2_Missense_Mutation_p.G35E|HDC_uc010uff.1_Missense_Mutation_p.G292E	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	292					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	ATACTCAATCCCCTTCAGAAA	0.562000													5	7					0	0	0.021553	0	0
UNC13C	440279	broad.mit.edu	37	15	54306842	54306842	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr15:54306842C>T	uc002ack.2	+	1	1742	c.1742C>T	c.(1741-1743)TCT>TTT	p.S581F		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	581					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		CTCCTGTCATCTTCGGACCGG	0.443000													9	16					0	0	0.006214	0	0
KBTBD13	390594	broad.mit.edu	37	15	65369261	65369261	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr15:65369261C>T	uc010uis.1	+	1	108	c.108C>T	c.(106-108)TTC>TTT	p.F36F	RASL12_uc010uir.1_5'Flank	NM_001101362	NP_001094832	C9JR72	KBTBD_HUMAN	hypothetical protein LOC390594	36	BTB.					cytoplasm					0						GAGGCCTCTTCCGCTCCGGCA	0.721000													5	4					0	0	0.014758	0	0
CILP	8483	broad.mit.edu	37	15	65497795	65497795	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr15:65497795C>T	uc002aon.2	-	5	615	c.434G>A	c.(433-435)CGC>CAC	p.R145H		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	145					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						TGTGTCTCGGCGCAGGGATCC	0.557000													8	44					0	0	0.006214	0	0
SLC24A1	9187	broad.mit.edu	37	15	65917344	65917344	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr15:65917344G>A	uc010ujf.1	+	2	1213	c.926G>A	c.(925-927)GGA>GAA	p.G309E	SLC24A1_uc010ujd.1_Missense_Mutation_p.G309E|SLC24A1_uc010uje.1_Missense_Mutation_p.G309E|SLC24A1_uc010ujg.1_Missense_Mutation_p.G309E|SLC24A1_uc010ujh.1_Missense_Mutation_p.G309E	NM_004727	NP_004718	O60721	NCKX1_HUMAN	solute carrier family 24	309	Extracellular (Potential).				response to light intensity|visual perception	integral to plasma membrane|membrane fraction|outer membrane	calcium, potassium:sodium antiporter activity|protein binding|symporter activity				0						ACTCCCCAGGGAACAGTCCTG	0.552000													82	45					0	0	0.014410	0	0
PARP6	56965	broad.mit.edu	37	15	72557446	72557446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr15:72557446G>A	uc002auc.2	-	6	763	c.304C>T	c.(304-306)CTC>TTC	p.L102F	PARP6_uc002aua.2_5'UTR|PARP6_uc002aub.2_RNA|PARP6_uc002aud.3_RNA|PARP6_uc002auf.1_Missense_Mutation_p.L102F	NM_020214	NP_064599	Q2NL67	PARP6_HUMAN	poly (ADP-ribose) polymerase family, member 6	102							NAD+ ADP-ribosyltransferase activity				0						TACTGGGAGAGAGAAAATCGC	0.478000													29	14					0	0	0.025465	0	0
NPTN	27020	broad.mit.edu	37	15	73889472	73889472	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr15:73889472G>A	uc002avs.2	-	2	527	c.330C>T	c.(328-330)GAC>GAT	p.D110D	NPTN_uc010bjc.2_Silent_p.D110D|NPTN_uc002avt.2_Intron|NPTN_uc002avr.2_Intron|NPTN_uc010ula.1_Intron	NM_012428	NP_036560	Q9Y639	NPTN_HUMAN	neuroplastin isoform b precursor	110	Ig-like 1.|Extracellular (Potential).				elevation of cytosolic calcium ion concentration|homophilic cell adhesion|long-term synaptic potentiation|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of long-term neuronal synaptic plasticity|positive regulation of neuron projection development|positive regulation of protein phosphorylation	integral to membrane|plasma membrane|presynaptic membrane	cell adhesion molecule binding|type 1 fibroblast growth factor receptor binding				0						AAGTCCCAGAGTCCTCCAAGG	0.587000													9	81					0	0	0.004482	0	0
CHTF18	63922	broad.mit.edu	37	16	846741	846741	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr16:846741C>T	uc002cke.3	+	19	2544	c.2481C>T	c.(2479-2481)TTC>TTT	p.F827F	CHTF18_uc002ckf.3_Silent_p.F855F|CHTF18_uc010brf.2_Silent_p.F409F|CHTF18_uc002ckg.3_Silent_p.F345F	NM_022092	NP_071375	Q8WVB6	CTF18_HUMAN	CTF18, chromosome transmission fidelity factor	827					cell cycle|DNA replication	nucleus	ATP binding|DNA binding|nucleoside-triphosphatase activity			kidney(1)	1		Hepatocellular(780;0.00335)				TCTGCCGCTTCCCTGAGCTGC	0.687000													10	20					0	0	0.010729	0	0
PGP	283871	broad.mit.edu	37	16	2264143	2264143	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr16:2264143G>A	uc002cpk.1	-	1	680	c.636C>T	c.(634-636)ATC>ATT	p.I212I	PGP_uc010uvz.1_RNA	NM_001042371	NP_001035830	A6NDG6	PGP_HUMAN	phosphoglycolate phosphatase	212					carbohydrate metabolic process		phosphoglycolate phosphatase activity			skin(1)	1						ACGGACCCGCGATGAAGCGGC	0.617000													10	11					0	0	0.006214	0	0
ABCC6	368	broad.mit.edu	37	16	16256896	16256896	+	Missense_Mutation	SNP	C	T	T	rs147794514		TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr16:16256896C>T	uc002den.3	-	24	3497	c.3460G>A	c.(3460-3462)GTA>ATA	p.V1154I	ABCC6_uc010bvo.2_Intron	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	1154	ABC transmembrane type-1 2.|Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CTTTCATCTACGCGAGCATTG	0.572000													5	264					0	0	0.003080	0	0
GGA2	23062	broad.mit.edu	37	16	23497447	23497448	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr16:23497447_23497448GG>AA	uc002dlq.2	-	8	762_763	c.686_687CC>TT	c.(685-687)TCC>TTT	p.S229F	GGA2_uc010bxo.1_RNA	NM_015044	NP_055859	Q9UJY4	GGA2_HUMAN	ADP-ribosylation factor binding protein 2	229	GAT.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|clathrin-coated vesicle|endosome membrane|trans-Golgi network	ADP-ribosylation factor binding			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(48;0.0386)		TGACCCTCTTGGACACCTTCTC	0.574000													36	60					0	0	0.004672	0	0
ATXN2L	11273	broad.mit.edu	37	16	28846473	28846473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr16:28846473C>T	uc002drc.2	+	19	2696	c.2528C>T	c.(2527-2529)CCT>CTT	p.P843L	uc010vct.1_Intron|ATXN2L_uc002drb.2_Missense_Mutation_p.P843L|ATXN2L_uc002dqy.2_Missense_Mutation_p.P843L|ATXN2L_uc002dra.2_Missense_Mutation_p.P843L|ATXN2L_uc002dqz.2_Missense_Mutation_p.P843L|ATXN2L_uc010vdb.1_Missense_Mutation_p.P849L|ATXN2L_uc002dre.2_Missense_Mutation_p.P843L|ATXN2L_uc002drf.2_Missense_Mutation_p.P252L|ATXN2L_uc002drg.2_Missense_Mutation_p.P125L	NM_007245	NP_009176	Q8WWM7	ATX2L_HUMAN	ataxin 2 related protein isoform A	843						membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CCTCAGTACCCTTCTGCAGAG	0.642000													81	139					0	0	0.014410	0	0
SLC6A10P	386757	broad.mit.edu	37	16	32890574	32890574	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr16:32890574G>A	uc002edh.1	-	5	488	c.312C>T	c.(310-312)TTC>TTT	p.F104F	SLC6A10P_uc002edi.1_RNA					RecName: Full=Transporter;												0						AGGACAGCACGAAGGCCCAGC	0.607000													8	14					0	0	0.004482	0	0
NFATC3	4775	broad.mit.edu	37	16	68156976	68156976	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr16:68156976C>T	uc002evo.1	+	2	1400	c.1190C>T	c.(1189-1191)TCA>TTA	p.S397L	NFATC3_uc010vkl.1_5'UTR|NFATC3_uc010vkm.1_5'UTR|NFATC3_uc010vkn.1_5'UTR|NFATC3_uc010vko.1_5'UTR|NFATC3_uc010vkp.1_5'UTR|NFATC3_uc010vkq.1_5'UTR|NFATC3_uc002evl.2_Intron|NFATC3_uc002evk.2_Missense_Mutation_p.S397L|NFATC3_uc002evm.1_Missense_Mutation_p.S397L|NFATC3_uc002evn.1_Missense_Mutation_p.S397L|NFATC3_uc010vkr.1_5'UTR|NFATC3_uc010vks.1_5'UTR|NFATC3_uc010vkt.1_5'UTR|NFATC3_uc010vku.1_5'UTR|NFATC3_uc010vkv.1_5'UTR|NFATC3_uc010vkw.1_5'UTR|NFATC3_uc010vkx.1_5'UTR|NFATC3_uc010vky.1_5'UTR|NFATC3_uc010vkz.1_5'UTR|NFATC3_uc010vla.1_5'UTR|NFATC3_uc010vlb.1_5'UTR|NFATC3_uc010vlc.1_5'UTR	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	397					inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		TCAGTTCCTTCACCCTTTACC	0.443000													36	64					0	0	0.025465	0	0
ZFHX3	463	broad.mit.edu	37	16	72828383	72828383	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr16:72828383C>T	uc002fck.2	-	9	8871	c.8198G>A	c.(8197-8199)CGT>CAT	p.R2733H	ZFHX3_uc002fcl.2_Missense_Mutation_p.R1819H	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2733	C2H2-type 20.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				ATGCCAGTGACGGGACCGGAT	0.542000													7	50					0	0	0.006214	0	0
ITGAE	3682	broad.mit.edu	37	17	3618181	3618181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr17:3618181G>A	uc002fwo.3	-	31	3599	c.3500C>T	c.(3499-3501)GCC>GTC	p.A1167V	ITGAE_uc002fwn.3_RNA	NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	1167	Cytoplasmic (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		TTTCAGCTGGGCCTTCCTGAT	0.468000													10	28					0	0	0.010729	0	0
WSCD1	23302	broad.mit.edu	37	17	5984093	5984093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr17:5984093C>T	uc010cli.2	+	2	494	c.115C>T	c.(115-117)CGC>TGC	p.R39C	WSCD1_uc002gcn.2_Missense_Mutation_p.R39C|WSCD1_uc002gco.2_Missense_Mutation_p.R39C|WSCD1_uc010clj.2_5'UTR	NM_015253	NP_056068	Q658N2	WSCD1_HUMAN	WSC domain containing 1	39						integral to membrane	sulfotransferase activity				0						GCAGCGGGTCCGCGTGGCTCT	0.687000													8	4					0	0	0.006214	0	0
MYH10	4628	broad.mit.edu	37	17	8415804	8415804	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr17:8415804G>A	uc002gll.2	-	22	2920	c.2824C>T	c.(2824-2826)CAA>TAA	p.Q942*	MYH10_uc002glm.2_Nonsense_Mutation_p.Q973*|MYH10_uc010cnx.2_Nonsense_Mutation_p.Q951*	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	942	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						TTTTCATTTTGGAGGATTTGG	0.333000													6	17					0	0	0.001984	0	0
MYH4	4622	broad.mit.edu	37	17	10362568	10362568	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr17:10362568C>A	uc002gmn.2	-	15	1698	c.1587G>T	c.(1585-1587)AAG>AAT	p.K529N	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	529	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TCATATGAACCTTCTCGATGA	0.473000													28	96					4.02929e-09	4.1761e-09	0.010818	1	0
MYH2	4620	broad.mit.edu	37	17	10426843	10426843	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr17:10426843C>T	uc010coi.2	-	37	5570	c.5442G>A	c.(5440-5442)GGG>GGA	p.G1814G	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.G1814G|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1814	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TCTGCTTCTTCCCACCCTTCA	0.542000													45	71					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	17	16734523	16734523	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr17:16734523G>A	uc010vwr.1	-	4	938	c.496C>T	c.(496-498)CTG>TTG	p.L166L						SubName: Full=cDNA FLJ53570, highly similar to Keratin, type I cytoskeletal 16;																		ATCTCATTCAGGATGCAGCTC	0.607000													6	55					0	0	0.006214	0	0
AKAP10	11216	broad.mit.edu	37	17	19866217	19866217	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr17:19866217A>C	uc002gwo.2	-	3	392	c.255T>G	c.(253-255)AGT>AGG	p.S85R	AKAP10_uc002gwp.1_Missense_Mutation_p.S85R|AKAP10_uc010cqw.1_Missense_Mutation_p.S85R|AKAP10_uc010vze.1_Missense_Mutation_p.S6R	NM_007202	NP_009133	O43572	AKA10_HUMAN	A-kinase anchor protein 10 precursor	85					blood coagulation|protein localization	cytosol|mitochondrion|plasma membrane	signal transducer activity			skin(1)	1	all_cancers(12;2.08e-05)|all_epithelial(12;0.00158)|Breast(13;0.165)					CTGTCCTGCTACTTGAAAAGG	0.443000													45	90					0	0	0.014410	0	0
KCNH4	23415	broad.mit.edu	37	17	40315654	40315654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr17:40315654C>T	uc002hzb.2	-	13	2780	c.2447G>A	c.(2446-2448)GGA>GAA	p.G816E		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	816	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		TCCAAAGGTTCCCAGTGGGGG	0.652000													13	9					0	0	0.024245	0	0
ABI3	51225	broad.mit.edu	37	17	47294030	47294030	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr17:47294030G>A	uc002iop.1	+	2	753	c.255G>A	c.(253-255)CAG>CAA	p.Q85Q	ABI3_uc002ioq.1_Silent_p.Q85Q	NM_016428	NP_057512	Q9P2A4	ABI3_HUMAN	NESH protein isoform 1	85					cellular component movement|regulation of cell migration	cytoplasm|lamellipodium	protein binding				0			Epithelial(5;6.37e-06)|all cancers(6;6.36e-05)			CCCTGCGGCAGGTGGAAGCCC	0.652000										HNSCC(55;0.14)			7	13					0	0	0.006214	0	0
ABI3	51225	broad.mit.edu	37	17	47296976	47296976	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr17:47296976C>T	uc002iop.1	+	4	1035	c.537C>T	c.(535-537)TCC>TCT	p.S179S	ABI3_uc002ioq.1_Silent_p.S173S	NM_016428	NP_057512	Q9P2A4	ABI3_HUMAN	NESH protein isoform 1	179					cellular component movement|regulation of cell migration	cytoplasm|lamellipodium	protein binding				0			Epithelial(5;6.37e-06)|all cancers(6;6.36e-05)			CACCCGCCTCCGCCACCTTGG	0.687000										HNSCC(55;0.14)			7	7					0	0	0.008291	0	0
MRC2	9902	broad.mit.edu	37	17	60768025	60768025	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr17:60768025C>G	uc002jad.2	+	27	4317	c.3915C>G	c.(3913-3915)ATC>ATG	p.I1305M	MRC2_uc002jae.2_Missense_Mutation_p.I376M|MRC2_uc002jaf.2_Missense_Mutation_p.I171M	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	1305	Extracellular (Potential).|C-type lectin 8.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						TCCTGTCTATCCTGGATGAGA	0.637000													3	95					0	0	0.009096	0	0
AXIN2	8313	broad.mit.edu	37	17	63533688	63533688	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr17:63533688G>A	uc002jfi.2	-	6	1755	c.1466C>T	c.(1465-1467)CCC>CTC	p.P489L	AXIN2_uc002jfh.2_Missense_Mutation_p.P489L	NM_004655	NP_004646	Q9Y2T1	AXIN2_HUMAN	axin 2	489					cellular protein localization|cellular response to organic cyclic compound|dorsal/ventral axis specification|intramembranous ossification|maintenance of DNA repeat elements|mRNA stabilization|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of cell proliferation|negative regulation of osteoblast differentiation|odontogenesis|positive regulation of cell death|positive regulation of epithelial to mesenchymal transition|positive regulation of protein phosphorylation|regulation of centromeric sister chromatid cohesion|regulation of mismatch repair|Wnt receptor signaling pathway involved in somitogenesis	Axin-APC-beta-catenin-GSK3B complex|cell cortex|centrosome|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|nucleus|plasma membrane|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			central_nervous_system(1)|skin(1)	2						GGCGGCCGCGGGAGGCAGCTT	0.692000									Oligodontia_Ectodermal_Dysplasia_and_Colorectal_Polyp_syndrome				8	11					0	0	0.004482	0	0
GPR142	350383	broad.mit.edu	37	17	72368513	72368514	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr17:72368513_72368514GG>AA	uc010wqy.1	+	4	1163_1164	c.1163_1164GG>AA	c.(1162-1164)CGG>CAA	p.R388Q	GPR142_uc010wqx.1_Missense_Mutation_p.R300Q	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	388	Extracellular (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CCTGTCCACCGGGACTGGAGGG	0.609000													28	65					0	0	0.004672	0	0
H3F3B	3021	broad.mit.edu	37	17	73774768	73774768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr17:73774768C>T	uc002jpl.2	-	4	452	c.319G>A	c.(319-321)GAT>AAT	p.D107N		NM_005324	NP_005315	P84243	H33_HUMAN	H3 histone, family 3B	107					blood coagulation|nucleosome assembly	nucleoplasm|nucleosome	DNA binding			ovary(1)	1	all_cancers(13;1.5e-07)		all cancers(21;2.61e-06)|Epithelial(20;7.39e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|LUSC - Lung squamous cell carcinoma(166;0.154)			AGGTTGGTATCTTCGAACAGA	0.582000													5	119					0	0	0.014758	0	0
CXADRP3	440224	broad.mit.edu	37	18	14478215	14478215	+	RNA	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr18:14478215C>T	uc010xai.1	-	3		c.1349G>A				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						TCACAGGAATCACGCCCATTC	0.468000													20	3					0	0	0.024334	0	0
Unknown	0	broad.mit.edu	37	18	44775145	44775145	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr18:44775145G>A	uc010dnt.1	-	1	410	c.410C>T	c.(409-411)CCC>CTC	p.P137L						RecName: Full=Ladybird homeobox corepressor 1-like protein; AltName: Full=LBX1 corepressor 1-like protein; AltName: Full=Functional Smad-suppressing element on chromosome 18;          Short=Fussel-18;																		TGGCAGCTTGGGCGGCCTGTT	0.662000													5	1					0	0	0.021553	0	0
ELANE	1991	broad.mit.edu	37	19	856086	856086	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:856086C>T	uc002lqb.2	+	5	764	c.726C>T	c.(724-726)ATC>ATT	p.I242I		NM_001972	NP_001963	P08246	ELNE_HUMAN	neutrophil elastase preproprotein	242	Peptidase S1.				cellular calcium ion homeostasis|negative regulation of chemokine biosynthetic process|negative regulation of chemotaxis|negative regulation of inflammatory response|negative regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of MAP kinase activity|positive regulation of smooth muscle cell proliferation|protein catabolic process|proteolysis|response to UV	cell surface|extracellular region|stored secretory granule	bacterial cell surface binding|cytokine binding|heparin binding			pancreas(1)	1					Alpha-1-proteinase inhibitor(DB00058)|Filgrastim(DB00099)|Pegfilgrastim(DB00019)	TAAACTGGATCGACTCTATCA	0.652000									Kostmann_syndrome				87	160					0	0	0.014410	0	0
SEMA6B	10501	broad.mit.edu	37	19	4550813	4550813	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:4550813G>A	uc010duc.1	-	10	1157	c.1119C>T	c.(1117-1119)CCC>CCT	p.P373P	SEMA6B_uc010dud.2_Silent_p.P373P|SEMA6B_uc010xih.1_Silent_p.P373P	NM_032108	NP_115484	Q9H3T3	SEM6B_HUMAN	semaphorin 6B precursor	373	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		GTTCTCACCGGGGTCGAGGCA	0.632000													22	38					0	0	0.008361	0	0
C3	718	broad.mit.edu	37	19	6711045	6711045	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:6711045G>A	uc002mfm.2	-	12	1494	c.1432C>T	c.(1432-1434)CGA>TGA	p.R478*		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	478					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CGGTCCATTCGCAGGAGGAAG	0.602000													70	158					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9061470	9061470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:9061470G>A	uc002mkp.2	-	3	26180	c.25976C>T	c.(25975-25977)TCC>TTC	p.S8659F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8661	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGAGGAAGGGGATAGATGTTT	0.433000													24	39					0	0	0.006320	0	0
ZNF44	51710	broad.mit.edu	37	19	12384185	12384185	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:12384185G>A	uc010xmj.1	-	5	1234	c.1029C>T	c.(1027-1029)TCC>TCT	p.S343S	ZNF44_uc002mtl.2_Intron|ZNF44_uc010dyr.1_Intron|ZNF44_uc010xmi.1_RNA|ZNF44_uc002mtn.3_RNA|ZNF44_uc010dys.2_Silent_p.S295S	NM_001164276	NP_001157748	P15621	ZNF44_HUMAN	zinc finger protein 44 isoform 1	343	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)	1		Renal(1328;0.157)		GBM - Glioblastoma multiforme(1328;0.0164)|Lung(535;0.179)		GTACTCGAAGGGAACCGGAAA	0.408000													25	50					0	0	0.016522	0	0
MAST3	23031	broad.mit.edu	37	19	18232549	18232549	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:18232549C>T	uc002nhz.3	+	3	126	c.126C>T	c.(124-126)CTC>CTT	p.L42L		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	42							ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						CCCCGACCCTCTCCCGGCCCC	0.697000													57	93					0	0	0.014410	0	0
ZNF90	7643	broad.mit.edu	37	19	20236224	20236224	+	RNA	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:20236224C>T	uc002nos.1	+	5		c.900C>T			ZNF90_uc002not.1_RNA			Q03938	ZNF90_HUMAN	Synthetic construct DNA, clone: pF1KB9685, Homo sapiens ZNF90 gene for zinc finger protein 90, without stop codon, in Flexi system.							Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TAGCTGATCCCCGTCGCTGCA	0.498000													9	22					0	0	0.008291	0	0
Unknown	0	broad.mit.edu	37	19	23329273	23329273	+	RNA	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:23329273G>A	uc002nrb.1	+	4		c.1626G>A								Homo sapiens cDNA FLJ16640 fis, clone TESTI4028938, moderately similar to Zinc finger protein 85.																		ATTCATTCTGGGGAAAAAATC	0.363000													12	21					0	0	0.016723	0	0
ZNF91	7644	broad.mit.edu	37	19	23544783	23544783	+	Missense_Mutation	SNP	C	T	T	rs410211		TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:23544783C>T	uc002nre.2	-	4	1111	c.998G>A	c.(997-999)CGT>CAT	p.R333H	ZNF91_uc010xrj.1_Missense_Mutation_p.R301H	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	333	C2H2-type 7.			R -> H (in Ref. 1; AAA59469).		nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				GGTTGAAGAACGGCTAAAAGC	0.393000													5	111					0	0	0.014758	0	0
CATSPERG	57828	broad.mit.edu	37	19	38857942	38857942	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:38857942C>T	uc002oih.3	+	23	2847	c.2760C>T	c.(2758-2760)CTC>CTT	p.L920L	CATSPERG_uc002oig.3_Silent_p.L880L|CATSPERG_uc002oif.3_Silent_p.L560L|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	920	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						CCTGCTTTCTCTTCCGGGACA	0.572000													14	26					0	0	0.024245	0	0
RYR1	6261	broad.mit.edu	37	19	38942423	38942423	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:38942423G>A	uc002oit.2	+	12	1272	c.1142G>A	c.(1141-1143)GGC>GAC	p.G381D	RYR1_uc002oiu.2_Missense_Mutation_p.G381D	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	381	Cytoplasmic.|MIR 5.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CACCAGGAGGGCCACATGGAC	0.627000													39	46					0	0	0.009718	0	0
PGLYRP1	8993	broad.mit.edu	37	19	46522828	46522828	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:46522828C>T	uc002pdx.1	-	2	409	c.365G>A	c.(364-366)TGG>TAG	p.W122*		NM_005091	NP_005082	O75594	PGRP1_HUMAN	peptidoglycan recognition protein 1 precursor	122					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region	bacterial cell surface binding|N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)	2		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.0036)|GBM - Glioblastoma multiforme(486;0.022)|Epithelial(262;0.208)		CATGGGGTTCCATAAGTGACC	0.597000													29	45					0	0	0.010818	0	0
PLA2G4C	8605	broad.mit.edu	37	19	48578067	48578068	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:48578067_48578068GG>AA	uc002phx.2	-	12	1360_1361	c.962_963CC>TT	c.(961-963)TCC>TTT	p.S321F	PLA2G4C_uc002phw.2_Missense_Mutation_p.S256F|PLA2G4C_uc010elr.2_Missense_Mutation_p.S321F|PLA2G4C_uc010xzd.1_Missense_Mutation_p.S331F	NM_003706	NP_003697	Q9UP65	PA24C_HUMAN	phospholipase A2, group IVC isoform 1 precursor	321	PLA2c.				arachidonic acid metabolic process|glycerophospholipid catabolic process|inflammatory response|intracellular signal transduction|parturition	cytosol|membrane	calcium-independent phospholipase A2 activity|phospholipid binding			ovary(1)|skin(1)	2		all_cancers(25;2.84e-05)|all_lung(116;4.62e-05)|Lung NSC(112;7.61e-05)|all_epithelial(76;0.000192)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;8.09e-05)|all cancers(93;0.000517)|Epithelial(262;0.0135)|GBM - Glioblastoma multiforme(486;0.0717)		GCTTTTCCAGGGAGGTCCTGGT	0.535000													69	123					0	0	0.004672	0	0
FAM83E	54854	broad.mit.edu	37	19	49106808	49106808	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:49106808G>A	uc002pjn.2	-	4	1184	c.1119C>T	c.(1117-1119)TCC>TCT	p.S373S		NM_017708	NP_060178	Q2M2I3	FA83E_HUMAN	hypothetical protein LOC54854	373										ovary(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		GGTCCCACATGGAGCGGCTgg	0.512000													12	21					0	0	0.024245	0	0
ZNF616	90317	broad.mit.edu	37	19	52619644	52619644	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:52619644C>G	uc002pym.2	-	4	1056	c.773G>C	c.(772-774)AGA>ACA	p.R258T	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	258	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		CCTTTGGTGTCTTACAAAATA	0.383000													12	55					0	0	0.013537	0	0
NLRP8	126205	broad.mit.edu	37	19	56466570	56466570	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:56466570C>T	uc002qmh.2	+	3	1217	c.1146C>T	c.(1144-1146)TTC>TTT	p.F382F	NLRP8_uc010etg.2_Silent_p.F382F	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	382	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TCTTGAGTTTCGCCATGGAAA	0.473000													28	59					0	0	0.008361	0	0
ZNF583	147949	broad.mit.edu	37	19	56935571	56935571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr19:56935571C>T	uc010ygl.1	+	5	1709	c.1544C>T	c.(1543-1545)ACT>ATT	p.T515I	ZNF583_uc002qnc.2_Missense_Mutation_p.T515I|ZNF583_uc010ygm.1_Missense_Mutation_p.T515I	NM_001159860	NP_001153332	Q96ND8	ZN583_HUMAN	zinc finger protein 583	515					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0564)		AGAATTCATACTGGAGAAAGA	0.348000													33	72					0	0	0.021022	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17699187	17699187	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:17699187C>T	uc002rcl.1	-	1	520	c.496G>A	c.(496-498)GAT>AAT	p.D166N	RAD51AP2_uc010exn.1_Missense_Mutation_p.D157N	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	166										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CCATGTATATCGTGTATAGAG	0.423000													26	37					0	0	0.010818	0	0
MYADML	151325	broad.mit.edu	37	2	33952207	33952207	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:33952207G>A	uc002rpb.2	-	1	1078	c.636C>T	c.(634-636)ATC>ATT	p.I212I		NR_003143				RecName: Full=Myeloid-associated differentiation marker-like protein.;												0						GGCGGTCCCAGATACACACAA	0.577000													3	6					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	2	38709454	38709454	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:38709454C>T	uc002rqu.1	+	1	529	c.462C>T	c.(460-462)ATC>ATT	p.I154I						SubName: Full=RPLP0 protein;																		CCATTGAAATCCTGAGTGATG	0.542000													22	25					0	0	0.006320	0	0
THADA	63892	broad.mit.edu	37	2	43514128	43514128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:43514128G>A	uc002rsw.3	-	35	5435	c.5083C>T	c.(5083-5085)CCT>TCT	p.P1695S	THADA_uc010far.2_Missense_Mutation_p.P890S|THADA_uc002rsx.3_Missense_Mutation_p.P1695S|THADA_uc002rsy.3_RNA	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	1695							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				GACTCTGTAGGAAGATGGTCT	0.488000													15	22					0	0	0.004990	0	0
XPO1	7514	broad.mit.edu	37	2	61719317	61719317	+	Silent	SNP	G	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:61719317G>C	uc002sbj.2	-	16	2468	c.1740C>G	c.(1738-1740)GTC>GTG	p.V580V	XPO1_uc010fcl.2_Silent_p.V576V|XPO1_uc010ypn.1_Silent_p.V576V|XPO1_uc002sbk.2_Silent_p.V141V|XPO1_uc002sbh.2_Silent_p.V227V	NM_003400	NP_003391	O14980	XPO1_HUMAN	exportin 1	580	Necessary for HTLV-1 Rex-mediated mRNA export.|HEAT 5.				intracellular protein transport|mitotic prometaphase|mRNA metabolic process|mRNA transport|viral genome transport in host cell|viral infectious cycle	annulate lamellae|Cajal body|cytosol|kinetochore|nuclear envelope|nucleolus|ribonucleoprotein complex	protein binding|protein transporter activity|RNA binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	4			LUSC - Lung squamous cell carcinoma(7;5.71e-05)|Epithelial(17;0.0662)|all cancers(80;0.226)			CCATATCCTGGACTCCATCAT	0.368000													24	44					0	0	0.008361	0	0
OR7E91P	79315	broad.mit.edu	37	2	71256283	71256283	+	RNA	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:71256283G>A	uc002sho.2	+	3		c.453G>A			OR7E91P_uc010fdz.2_RNA	NR_002185				Homo sapiens olfactory receptor, family 7, subfamily E, member 91 pseudogene, mRNA (cDNA clone IMAGE:3996998).												0						GTTTCACCTCGGCCACGGTTC	0.552000													3	11					0	0	0.009096	0	0
DYSF	8291	broad.mit.edu	37	2	71791234	71791234	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:71791234A>G	uc002sie.2	+	24	2778	c.2402A>G	c.(2401-2403)GAC>GGC	p.D801G	DYSF_uc010feg.2_Missense_Mutation_p.D832G|DYSF_uc010feh.2_Missense_Mutation_p.D787G|DYSF_uc002sig.3_Missense_Mutation_p.D787G|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.D801G|DYSF_uc010fef.2_Missense_Mutation_p.D818G|DYSF_uc010fei.2_Missense_Mutation_p.D818G|DYSF_uc010fek.2_Missense_Mutation_p.D819G|DYSF_uc010fej.2_Missense_Mutation_p.D788G|DYSF_uc010fel.2_Missense_Mutation_p.D788G|DYSF_uc010feo.2_Missense_Mutation_p.D833G|DYSF_uc010fem.2_Missense_Mutation_p.D802G|DYSF_uc010fen.2_Missense_Mutation_p.D819G|DYSF_uc002sif.2_Missense_Mutation_p.D802G	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	801	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CTGCAGGGAGACAAGCGTGTG	0.627000													32	56					0	0	0.025465	0	0
AFF3	3899	broad.mit.edu	37	2	100623722	100623722	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:100623722G>A	uc002tag.2	-	5	611	c.375C>T	c.(373-375)ATC>ATT	p.I125I	AFF3_uc002taf.2_Silent_p.I150I|AFF3_uc010fiq.1_Silent_p.I125I|AFF3_uc010yvr.1_Silent_p.I279I|AFF3_uc002tah.1_Silent_p.I150I|AFF3_uc010fir.1_Silent_p.I202I|AFF3_uc002tai.2_Silent_p.I47I	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	125					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						TAGTGCTACAGATAGACGAGG	0.552000													25	51					0	0	0.024334	0	0
MARCO	8685	broad.mit.edu	37	2	119731990	119731990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:119731990G>A	uc002tln.1	+	5	674	c.542G>A	c.(541-543)GGG>GAG	p.G181E	MARCO_uc010yyf.1_Missense_Mutation_p.G103E	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	181	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						GGAGCCAAGGGGGCTATGGGA	0.572000													5	10					0	0	0.003080	0	0
GLI2	2736	broad.mit.edu	37	2	121742146	121742146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:121742146G>A	uc010flp.2	+	11	1813	c.1783G>A	c.(1783-1785)GTC>ATC	p.V595I	GLI2_uc002tmq.1_Missense_Mutation_p.V267I|GLI2_uc002tmr.1_Missense_Mutation_p.V250I|GLI2_uc002tmt.3_Missense_Mutation_p.V267I|GLI2_uc002tmu.3_Missense_Mutation_p.V250I|GLI2_uc002tmw.1_Missense_Mutation_p.V578I	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	595					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				AGATGCCCACGTCACCAAGAA	0.607000													15	56					0	0	0.028581	0	0
GLI2	2736	broad.mit.edu	37	2	121747944	121747944	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:121747944C>T	uc010flp.2	+	13	4484	c.4454C>T	c.(4453-4455)CCC>CTC	p.P1485L	GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Missense_Mutation_p.P1157L|GLI2_uc002tmu.3_Missense_Mutation_p.P1140L	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1485					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				AGCATCCAGCCCCAGCCCTTG	0.622000													26	60					0	0	0.024334	0	0
POTEF	728378	broad.mit.edu	37	2	130877866	130877866	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:130877866T>C	uc010fmh.2	-	3	623	c.223A>G	c.(223-225)AGT>GGT	p.S75G		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	75						cell cortex	ATP binding			skin(3)|ovary(2)	5						CTCTTGCCACTCCCCCTGCAG	0.592000													5	192					0	0	0.014758	0	0
THSD7B	80731	broad.mit.edu	37	2	138033548	138033548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:138033548G>A	uc002tva.1	+	11	2359	c.2359G>A	c.(2359-2361)GGA>AGA	p.G787R	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.G677R	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TGTCTGGCAGGGAATAACGGG	0.398000													12	15					0	0	0.028581	0	0
NXPH2	11249	broad.mit.edu	37	2	139428696	139428696	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:139428696C>T	uc002tvi.2	-	2	591	c.591G>A	c.(589-591)GCG>GCA	p.A197A		NM_007226	NP_009157	O95156	NXPH2_HUMAN	neurexophilin 2 precursor	197	V (Cys-rich).				neuropeptide signaling pathway	extracellular region				ovary(3)|skin(1)	4				BRCA - Breast invasive adenocarcinoma(221;0.101)		CGGTCTTTTTCGCCCGATCTG	0.488000													4	12					0	0	0.009096	0	0
KCNH7	90134	broad.mit.edu	37	2	163236481	163236481	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:163236481C>T	uc002uch.1	-	14	3225	c.3013G>A	c.(3013-3015)GAA>AAA	p.E1005K		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	1005	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CTGGAGTCTTCAGGCTGGGGA	0.507000													32	80					0	0	0.013726	0	0
XIRP2	129446	broad.mit.edu	37	2	168103356	168103356	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:168103356G>A	uc002udx.2	+	8	5472	c.5454G>A	c.(5452-5454)AAG>AAA	p.K1818K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.K1643K|XIRP2_uc010fpq.2_Silent_p.K1596K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1643					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ACACAGTTAAGGTTTTTATGA	0.408000													26	44					0	0	0.024334	0	0
MYO1B	4430	broad.mit.edu	37	2	192252018	192252018	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:192252018C>T	uc010fsg.2	+	17	1878	c.1623C>T	c.(1621-1623)GCC>GCT	p.A541A	MYO1B_uc002usq.2_Silent_p.A541A|MYO1B_uc002usr.2_Silent_p.A541A|MYO1B_uc002ust.1_Silent_p.A179A	NM_001130158	NP_001123630	O43795	MYO1B_HUMAN	myosin IB isoform 1	541	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(5)|large_intestine(2)|ovary(1)	8			OV - Ovarian serous cystadenocarcinoma(117;0.0112)|Epithelial(96;0.104)|all cancers(119;0.236)			TGTCCCAAGCCATGTGGAAGG	0.507000													26	57					0	0	0.006320	0	0
DNAH7	56171	broad.mit.edu	37	2	196659167	196659167	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:196659167C>T	uc002utj.3	-	57	10712	c.10611G>A	c.(10609-10611)GTG>GTA	p.V3537V	DNAH7_uc002uti.3_Silent_p.V20V	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3537	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TGGTCATTTTCACTCCATTCT	0.453000													20	68					0	0	0.016522	0	0
CYP20A1	57404	broad.mit.edu	37	2	204131388	204131388	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:204131388A>G	uc002uzv.3	+	5	1206	c.584A>G	c.(583-585)CAG>CGG	p.Q195R	CYP20A1_uc002uzx.3_Missense_Mutation_p.Q93R|CYP20A1_uc010zif.1_Missense_Mutation_p.Q195R|CYP20A1_uc002uzy.3_Missense_Mutation_p.Q93R|CYP20A1_uc002uzw.3_RNA|CYP20A1_uc010ftw.2_5'UTR	NM_177538	NP_803882	Q6UW02	CP20A_HUMAN	cytochrome P450, family 20, subfamily A,	195						integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0						ATTCGCTTCCAGAAGAATCAT	0.313000													46	61					0	0	0.014410	0	0
PTH2R	5746	broad.mit.edu	37	2	209302538	209302538	+	Silent	SNP	T	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:209302538T>C	uc002vdb.2	+	4	556	c.343T>C	c.(343-345)TTA>CTA	p.L115L	PTH2R_uc010zjb.1_Silent_p.L126L	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	115	Extracellular (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		TATGCACAGCTTAAATAAAAC	0.408000													19	32					0	0	0.008871	0	0
SPAG16	79582	broad.mit.edu	37	2	214794769	214794769	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:214794769G>A	uc002veq.2	+	12	1392	c.1300G>A	c.(1300-1302)GGA>AGA	p.G434R	SPAG16_uc010fuz.1_Missense_Mutation_p.G285R|SPAG16_uc002ver.2_Missense_Mutation_p.G380R|SPAG16_uc010zjk.1_Missense_Mutation_p.G340R	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	434	WD 3.				cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		GACCTTTGAAGGACACAGCCG	0.438000													27	65					0	0	0.007291	0	0
WNT10A	80326	broad.mit.edu	37	2	219747084	219747084	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:219747084G>A	uc002vjd.1	+	2	778	c.315G>A	c.(313-315)TGG>TGA	p.W105*		NM_025216	NP_079492	Q9GZT5	WN10A_HUMAN	wingless-type MMTV integration site family,	105					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to transforming growth factor beta stimulus|female gonad development|hair follicle morphogenesis|odontogenesis|regulation of odontogenesis of dentine-containing tooth|sebaceous gland development|skin development|tongue development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			lung(1)|skin(1)	2		Renal(207;0.0474)		Epithelial(149;4.26e-07)|all cancers(144;8.8e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACCAGCGCTGGAACTGCTCAA	0.597000													21	51					0	0	0.010504	0	0
ABCB6	10058	broad.mit.edu	37	2	220082977	220082977	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:220082977A>C	uc002vkc.1	-	1	696	c.419T>G	c.(418-420)ATC>AGC	p.I140S	ABCB6_uc010fwe.1_Missense_Mutation_p.I140S|ABCB6_uc010zku.1_RNA|ATG9A_uc002vkd.1_RNA	NM_005689	NP_005680	Q9NP58	ABCB6_HUMAN	ATP-binding cassette, sub-family B, member 6	140					cadmium ion transmembrane transport|cellular iron ion homeostasis|detoxification of cadmium ion|porphyrin biosynthetic process	ATP-binding cassette (ABC) transporter complex|Golgi apparatus|integral to mitochondrial outer membrane|plasma membrane|vacuolar membrane	ATP binding|efflux transmembrane transporter activity|heme binding|heme-transporting ATPase activity			breast(1)|central_nervous_system(1)	2		Renal(207;0.0474)		Epithelial(149;1.22e-06)|all cancers(144;0.000201)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTTGATCCAGATGCCCATTGC	0.632000													41	111					0	0	0.014410	0	0
ALPI	248	broad.mit.edu	37	2	233322363	233322363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr2:233322363G>A	uc002vst.3	+	6	814	c.737G>A	c.(736-738)AGG>AAG	p.R246K	ALPI_uc002vsu.3_Missense_Mutation_p.R157K	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	246					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding			central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		AATGGAATCAGGCTGGACGGG	0.617000													21	33					0	0	0.012319	0	0
SLC4A11	83959	broad.mit.edu	37	20	3214214	3214214	+	Silent	SNP	C	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr20:3214214C>A	uc002wig.2	-	6	771	c.723G>T	c.(721-723)GGG>GGT	p.G241G	SLC4A11_uc010zqe.1_Silent_p.G268G|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Silent_p.G225G	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	241	Cytoplasmic (Potential).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						AGGAATTCTCCCCCCAGTTCT	0.637000													32	52					1.45844e-13	1.53646e-13	0.013726	1	0
ZNF133	7692	broad.mit.edu	37	20	18295947	18295947	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr20:18295947C>A	uc010gcq.2	+	5	757	c.452C>A	c.(451-453)GCC>GAC	p.A151D	ZNF133_uc010zrv.1_Missense_Mutation_p.A154D|ZNF133_uc010zrw.1_Missense_Mutation_p.A88D|ZNF133_uc010gcr.2_Missense_Mutation_p.A151D|ZNF133_uc010zrx.1_Missense_Mutation_p.A56D|ZNF133_uc002wql.3_Missense_Mutation_p.A150D|ZNF133_uc010gcs.2_Missense_Mutation_p.A150D|ZNF133_uc010zry.1_Missense_Mutation_p.A56D|ZNF133_uc002wqm.2_Missense_Mutation_p.A151D	NM_003434	NP_003425	P52736	ZN133_HUMAN	zinc finger protein 133	151						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)	2						GGAGAAGGTGCCATGCCTTTG	0.612000													4	155					4.096e-09	4.22813e-09	0.021553	1	0
C20orf185	359710	broad.mit.edu	37	20	31657760	31657760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr20:31657760C>T	uc002wym.1	+	11	1216	c.1216C>T	c.(1216-1218)CGG>TGG	p.R406W		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	406					innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						GTCCCTGGAACGGTAACTTGG	0.507000													95	147					0	0	0.014410	0	0
MMP24	10893	broad.mit.edu	37	20	33862257	33862257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr20:33862257G>A	uc002xbu.2	+	9	1786	c.1783G>A	c.(1783-1785)GAT>AAT	p.D595N	EDEM2_uc010zuv.1_Intron	NM_006690	NP_006681	Q9Y5R2	MMP24_HUMAN	matrix metalloproteinase 24 preproprotein	595	Extracellular (Potential).				proteolysis	integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00252)			GACCATCAACGATGTGCCGGG	0.617000													77	109					0	0	0.014410	0	0
SEMG2	6407	broad.mit.edu	37	20	43851398	43851398	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr20:43851398G>A	uc010ggz.2	+	2	1182	c.1125G>A	c.(1123-1125)TCG>TCA	p.S375S	SEMG2_uc002xnk.2_Silent_p.S375S|SEMG2_uc002xnl.2_Silent_p.S375S	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	375	Repeat-rich region.|4 X 60 AA tandem repeats, type I.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				GCAGTATTTCGATCCAAACTG	0.373000													45	67					0	0	0.014410	0	0
WFDC8	90199	broad.mit.edu	37	20	44207862	44207862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr20:44207862C>T	uc002xow.2	-	1	104	c.25G>A	c.(25-27)GGG>AGG	p.G9R	WFDC8_uc002xox.2_Missense_Mutation_p.G9R	NM_181510	NP_852611	Q8IUA0	WFDC8_HUMAN	WAP four-disulfide core domain 8 precursor	9						extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				CCTCCTCACCCTCCTTCAGTT	0.577000													71	130					0	0	0.014410	0	0
ZMYND8	23613	broad.mit.edu	37	20	45867868	45867868	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr20:45867868G>A	uc002xta.1	-	15	2493	c.2239C>T	c.(2239-2241)CCA>TCA	p.P747S	ZMYND8_uc010ghq.1_Missense_Mutation_p.P424S|ZMYND8_uc010ghr.1_Missense_Mutation_p.P722S|ZMYND8_uc002xst.1_Missense_Mutation_p.P675S|ZMYND8_uc002xsu.1_Intron|ZMYND8_uc002xsv.1_Missense_Mutation_p.P675S|ZMYND8_uc002xsw.1_Missense_Mutation_p.P499S|ZMYND8_uc002xsx.1_Missense_Mutation_p.P499S|ZMYND8_uc002xsy.1_Missense_Mutation_p.P722S|ZMYND8_uc002xsz.1_Missense_Mutation_p.P684S|ZMYND8_uc010zxy.1_Missense_Mutation_p.P774S|ZMYND8_uc002xtb.1_Missense_Mutation_p.P767S|ZMYND8_uc002xss.2_Missense_Mutation_p.P747S|ZMYND8_uc010zxz.1_Intron|ZMYND8_uc002xtc.1_Missense_Mutation_p.P767S|ZMYND8_uc002xtd.1_Missense_Mutation_p.P742S|ZMYND8_uc002xte.1_Missense_Mutation_p.P747S|ZMYND8_uc010zya.1_Missense_Mutation_p.P747S|ZMYND8_uc002xtf.1_Missense_Mutation_p.P767S|ZMYND8_uc002xtg.2_Missense_Mutation_p.P741S|ZMYND8_uc010ghs.1_Missense_Mutation_p.P741S|ZMYND8_uc002xsr.1_5'UTR	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	747							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			GTGGATGGTGGAGTTTTACCT	0.562000													64	69					0	0	0.014410	0	0
SALL4	57167	broad.mit.edu	37	20	50401095	50401095	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr20:50401095G>A	uc002xwh.3	-	4	2972	c.2871C>T	c.(2869-2871)ATC>ATT	p.I957I	SALL4_uc010gii.2_Silent_p.I520I|SALL4_uc002xwi.3_Silent_p.I180I	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	957					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						AAGGGGCCAGGATTTCCTTGG	0.522000													45	66					0	0	0.014410	0	0
DSCAM	1826	broad.mit.edu	37	21	41648177	41648177	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr21:41648177G>A	uc002yyq.1	-	11	2655	c.2203C>T	c.(2203-2205)CAG>TAG	p.Q735*	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	735	Extracellular (Potential).|Ig-like C2-type 8.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GCAATTGGCTGGAACTGGGGA	0.493000													11	27					0	0	0.013537	0	0
SLC5A4	6527	broad.mit.edu	37	22	32650130	32650130	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr22:32650130G>C	uc003ami.2	-	2	208	c.206C>G	c.(205-207)CCG>CGG	p.P69R		NM_014227	NP_055042	Q9NY91	SC5A4_HUMAN	solute carrier family 5 (low affinity glucose	69	Helical; (Potential).				carbohydrate transport|sodium ion transport	integral to membrane	symporter activity				0						TCCACTTACCGGCCACCAGGC	0.403000													24	51					0	0	0.008361	0	0
BRPF1	7862	broad.mit.edu	37	3	9780745	9780745	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr3:9780745A>G	uc003bse.2	+	3	1061	c.662A>G	c.(661-663)GAC>GGC	p.D221G	BRPF1_uc003bsf.2_Missense_Mutation_p.D221G|BRPF1_uc003bsg.2_Missense_Mutation_p.D221G|BRPF1_uc011ati.1_Missense_Mutation_p.D221G	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	221	Interaction with MYST3 and MYST4.				histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					GACGAGGAGGACTACATCTGG	0.507000													34	12					0	0	0.008740	0	0
CLASP2	23122	broad.mit.edu	37	3	33576729	33576729	+	Silent	SNP	A	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr3:33576729A>C	uc003cfu.2	-	33	4137	c.3783T>G	c.(3781-3783)CCT>CCG	p.P1261P	CLASP2_uc003cfs.2_Silent_p.P468P|CLASP2_uc003cft.2_RNA|CLASP2_uc010hgb.2_RNA|CLASP2_uc011axt.1_Silent_p.P861P	NM_015097	NP_055912	B2RTR1	B2RTR1_HUMAN	CLIP-associating protein 2	1270										ovary(3)|central_nervous_system(1)	4						ACATACCGTCAGGAAACTGGT	0.393000													17	10					0	0	0.007413	0	0
ENTPD3	956	broad.mit.edu	37	3	40442420	40442420	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr3:40442420C>T	uc003ckd.3	+	4	296	c.204C>T	c.(202-204)ACC>ACT	p.T68T	ENTPD3_uc010hhy.2_Silent_p.T68T|uc003cke.3_Intron	NM_001248	NP_001239	O75355	ENTP3_HUMAN	ectonucleoside triphosphate diphosphohydrolase	68	Extracellular (Potential).					integral to membrane	ATP binding|hydrolase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0605)|Kidney(284;0.0758)		CTTCAAGAACCACAGTCTACG	0.463000													106	27					0	0	0.014410	0	0
DNAH1	25981	broad.mit.edu	37	3	52356434	52356434	+	Translation_Start_Site	SNP	C	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr3:52356434C>A	uc011bef.1	+	2	237	c.-24C>A	c.(-26--22)GGCTG>GGATG		DNAH1_uc003ddt.1_Translation_Start_Site	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1						ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GGAGCTTCGGCTGGGGCATCT	0.597000													11	2					4.3838e-07	4.48901e-07	0.016723	1	0
ROBO2	6092	broad.mit.edu	37	3	77607240	77607240	+	Silent	SNP	G	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr3:77607240G>T	uc003dpy.3	+	9	2020	c.1377G>T	c.(1375-1377)CCG>CCT	p.P459P	ROBO2_uc003dpz.2_Silent_p.P463P|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Silent_p.P463P	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	459	Ig-like C2-type 5.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		TTACTTTTCCGGGTAGAGATC	0.418000													15	74					1.5739e-10	1.63788e-10	0.028581	1	0
PLCXD2	257068	broad.mit.edu	37	3	111426916	111426916	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr3:111426916C>T	uc003dya.2	+	2	893	c.307C>T	c.(307-309)CGA>TGA	p.R103*	PLCXD2_uc003dyb.2_Nonsense_Mutation_p.R103*|PLCXD2_uc003dxz.2_Nonsense_Mutation_p.R103*	NM_001134478	NP_001127950	Q0VAA5	PLCX2_HUMAN	phosphatidylinositol-specific phospholipase C, X	103	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(1)	1						CCTGACATTTCGAGAACAGCT	0.522000													36	17					0	0	0.007835	0	0
ILDR1	286676	broad.mit.edu	37	3	121712385	121712385	+	Missense_Mutation	SNP	C	T	T	rs150479416	by1000genomes	TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr3:121712385C>T	uc003ees.2	-	7	1317	c.1211G>A	c.(1210-1212)CGT>CAT	p.R404H	ILDR1_uc003eeq.2_Missense_Mutation_p.R372H|ILDR1_uc003eer.2_Missense_Mutation_p.R360H|ILDR1_uc010hrg.2_Missense_Mutation_p.R315H	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	404	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		CCTAGAGCTACGGTGCCTTCC	0.597000													36	10					0	0	0.011902	0	0
ADCY5	111	broad.mit.edu	37	3	123023025	123023025	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr3:123023025G>A	uc003egh.1	-	13	2448	c.2448C>T	c.(2446-2448)TTC>TTT	p.F816F	ADCY5_uc003egg.1_Silent_p.F449F|ADCY5_uc003egi.1_Silent_p.F375F	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	816					activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		GTGgggaggggaagagctagg	0.413000													30	12					0	0	0.012213	0	0
MED12L	116931	broad.mit.edu	37	3	151105887	151105887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr3:151105887G>A	uc003eyp.2	+	35	5311	c.5273G>A	c.(5272-5274)GGA>GAA	p.G1758E	MED12L_uc011bnz.1_Missense_Mutation_p.G1618E|MED12L_uc003eyy.1_Missense_Mutation_p.G921E	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1758					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TCAGATCAGGGAAAAACCACA	0.493000													15	5					0	0	0.028581	0	0
TTC14	151613	broad.mit.edu	37	3	180326584	180326584	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr3:180326584A>T	uc003fkk.2	+	11	1518	c.1386A>T	c.(1384-1386)TTA>TTT	p.L462F	TTC14_uc003fkl.2_3'UTR|TTC14_uc003fkm.2_Missense_Mutation_p.L462F	NM_133462	NP_597719	Q96N46	TTC14_HUMAN	tetratricopeptide repeat domain 14 isoform a	462							RNA binding			ovary(1)	1	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			GTAAGCTCTTAAAAGAAGAGA	0.303000													3	0					0	0	0.021553	0	0
RNF212	285498	broad.mit.edu	37	4	1107151	1107151	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr4:1107151G>A	uc003gcj.2	-	1	432	c.102C>T	c.(100-102)CTC>CTT	p.L34L	RNF212_uc003gci.2_Silent_p.L34L|RNF212_uc010ibp.2_RNA|RNF212_uc010ibq.2_Silent_p.L34L|RNF212_uc003gck.2_Silent_p.L34L	NM_001131034	NP_001124506	Q495C1	RN212_HUMAN	ring finger protein 212 isoform a	34	RING-type.						zinc ion binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (64;0.151)		GACCTTTGCCGAGGCAGGCGT	0.667000													8	15					0	0	0.003080	0	0
ZFYVE28	57732	broad.mit.edu	37	4	2355696	2355696	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr4:2355696C>T	uc003gex.1	-	2	463	c.144G>A	c.(142-144)CGG>CGA	p.R48R	ZFYVE28_uc011bvk.1_Translation_Start_Site|ZFYVE28_uc011bvl.1_Silent_p.R48R|ZFYVE28_uc003gey.3_Translation_Start_Site|ZFYVE28_uc003gez.2_Intron	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	48					negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						GCAGCGTGCACCGCTGGGGGT	0.677000													7	10					0	0	0.004482	0	0
CCKAR	886	broad.mit.edu	37	4	26483482	26483482	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr4:26483482G>A	uc003gse.1	-	5	1218	c.1065C>T	c.(1063-1065)ATC>ATT	p.I355I		NM_000730	NP_000721	P32238	CCKAR_HUMAN	cholecystokinin A receptor	355	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration|response to nutrient	integral to plasma membrane	cholecystokinin receptor activity			lung(3)|pancreas(1)	4		Breast(46;0.0503)			Ceruletide(DB00403)	ACAGGAGGAGGATGAAGGAAA	0.617000													28	62					0	0	0.008361	0	0
KCTD8	386617	broad.mit.edu	37	4	44176989	44176989	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr4:44176989G>T	uc003gwu.2	-	2	1524	c.1240C>A	c.(1240-1242)CAG>AAG	p.Q414K		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	414						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						ATGAGGGTCTGAAAGAGTTCA	0.428000										HNSCC(17;0.042)			24	245					9.65021e-13	1.01248e-12	0.010818	1	0
PDGFRA	5156	broad.mit.edu	37	4	55144678	55144678	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr4:55144678C>T	uc003han.3	+	15	2483	c.2152C>T	c.(2152-2154)CGG>TGG	p.R718W	PDGFRA_uc003haa.2_Missense_Mutation_p.R478W|PDGFRA_uc010igq.1_Missense_Mutation_p.R612W|PDGFRA_uc003ham.2_RNA|PDGFRA_uc003hao.1_Missense_Mutation_p.R97W	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	718	Protein kinase.|Cytoplasmic (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	TGAAAGCACACGGAGGTGGGT	0.443000			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			6	67					0	0	0.001984	0	0
CEP135	9662	broad.mit.edu	37	4	56876019	56876019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr4:56876019G>A	uc003hbi.2	+	19	2689	c.2455G>A	c.(2455-2457)GAA>AAA	p.E819K	CEP135_uc003hbj.2_Missense_Mutation_p.E525K	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4	819	Potential.				centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					CGCTTTTAAGGAAAACAGAAG	0.403000													18	34					0	0	0.021523	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146376	70146376	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr4:70146376T>G	uc003hej.2	+	1	160	c.158T>G	c.(157-159)GTG>GGG	p.V53G	UGT2B28_uc010ihr.2_Missense_Mutation_p.V53G	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	53					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	GGTCATGAGGTGACTGTACTG	0.418000													49	155					0	0	0.014410	0	0
ALB	213	broad.mit.edu	37	4	74274517	74274517	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr4:74274517G>A	uc003hgs.3	+	4	550	c.477G>A	c.(475-477)TTG>TTA	p.L159L	ALB_uc003hgw.3_Intron|ALB_uc011cbe.1_5'UTR|ALB_uc003hgt.3_Silent_p.L159L|ALB_uc010iii.2_Intron|ALB_uc003hgu.3_Intron|ALB_uc003hgv.3_Intron|ALB_uc011cbf.1_Silent_p.L49L|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_5'Flank	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	159	Albumin 1.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	AGACATTTTTGAAAAAGTAAG	0.353000													7	19					0	0	0.006214	0	0
SPP1	6696	broad.mit.edu	37	4	88902885	88902885	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr4:88902885C>T	uc003hra.2	+	6	640	c.475C>T	c.(475-477)CGA>TGA	p.R159*	SPP1_uc003hrb.2_Nonsense_Mutation_p.R132*|SPP1_uc003hrc.2_Nonsense_Mutation_p.R145*|SPP1_uc011cde.1_Nonsense_Mutation_p.R172*|SPP1_uc003hrd.2_Nonsense_Mutation_p.R118*	NM_001040058	NP_001035147	P10451	OSTP_HUMAN	secreted phosphoprotein 1 isoform a	159	Cell attachment site.				biomineral tissue development|cell adhesion|decidualization|embryo implantation|ossification|response to vitamin D	extracellular space	cytokine activity			ovary(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-05)		ATATGATGGCCGAGGTGATAG	0.458000													37	52					0	0	0.009718	0	0
MAB21L2	10586	broad.mit.edu	37	4	151505096	151505096	+	Silent	SNP	G	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr4:151505096G>T	uc003ilw.2	+	1	2020	c.915G>T	c.(913-915)CTG>CTT	p.L305L	LRBA_uc003ils.3_5'Flank|LRBA_uc003ilt.3_Intron|LRBA_uc003ilu.3_Intron|LRBA_uc010ipj.2_Intron	NM_006439	NP_006430	Q9Y586	MB212_HUMAN	mab-21-like protein 2	305					nervous system development	nucleus				ovary(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.159)		GCATCCTGCTGCAGCTCATCT	0.627000													13	77					4.3838e-07	4.48901e-07	0.016723	1	0
TUBB4Q	56604	broad.mit.edu	37	4	190905452	190905453	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr4:190905452_190905453CC>TT	uc011clg.1	-	3	234_235	c.231_232GG>AA	c.(229-234)TCGGGG>TCAAGG	p.G78R		NM_020040	NP_064424	Q99867	TBB4Q_HUMAN	tubulin, beta polypeptide 4, member Q	79					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;4.1e-31)|Epithelial(3;1.44e-30)|OV - Ovarian serous cystadenocarcinoma(60;2.03e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00839)|READ - Rectum adenocarcinoma(43;0.155)		CCGAAGGGCCCCGAGCGCACAG	0.673000													56	66					0	0	0.004672	0	0
CLPTM1L	81037	broad.mit.edu	37	5	1341922	1341922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr5:1341922G>A	uc003jch.2	-	3	363	c.317C>T	c.(316-318)GCC>GTC	p.A106V	CLPTM1L_uc003jcg.2_5'UTR	NM_030782	NP_110409	Q96KA5	CLP1L_HUMAN	CLPTM1-like	106	Extracellular (Potential).				apoptosis	integral to membrane				breast(1)|central_nervous_system(1)	2	Lung NSC(6;5.78e-14)|all_lung(6;4.47e-13)|all_epithelial(6;4.47e-09)		Epithelial(17;0.00931)|OV - Ovarian serous cystadenocarcinoma(19;0.0116)|all cancers(22;0.0181)	KIRC - Kidney renal clear cell carcinoma(5;0.177)|Kidney(13;0.208)		GAAGATGTAGGCATACAGCGT	0.488000													16	29					0	0	0.007413	0	0
EGFLAM	133584	broad.mit.edu	37	5	38370440	38370440	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr5:38370440C>T	uc003jlc.1	+	6	912	c.588C>T	c.(586-588)ATC>ATT	p.I196I	EGFLAM_uc003jlb.1_Silent_p.I196I	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	196	Fibronectin type-III 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					ATGAGCGGATCCAGATGGACT	0.502000													17	33					0	0	0.008871	0	0
TRIM23	373	broad.mit.edu	37	5	64907555	64907555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr5:64907555C>T	uc003jty.2	-	4	606	c.520G>A	c.(520-522)GAG>AAG	p.E174K	TRIM23_uc003jtw.2_Missense_Mutation_p.E174K|TRIM23_uc003jtx.2_Missense_Mutation_p.E174K	NM_001656	NP_001647	P36406	TRI23_HUMAN	ADP-ribosylation factor domain protein 1 isoform	174					interspecies interaction between organisms|small GTPase mediated signal transduction	Golgi membrane|lysosomal membrane	enzyme activator activity|GDP binding|GTP binding|GTPase activity|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|lung(1)	4		Lung NSC(167;3.24e-06)|Prostate(74;0.0138)|Breast(144;0.0433)|Ovarian(174;0.0545)|Colorectal(97;0.234)		Lung(70;0.00473)		ATAGTTTTCTCATGAGGTTTA	0.443000													47	74					0	0	0.014410	0	0
BDP1	55814	broad.mit.edu	37	5	70805733	70805733	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr5:70805733C>T	uc003kbp.1	+	17	3077	c.2814C>T	c.(2812-2814)TCC>TCT	p.S938S	BDP1_uc003kbn.1_Silent_p.S938S|BDP1_uc003kbo.2_Silent_p.S938S	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	938	3.|9 X 55 AA repeats of G-R-R-X-I-S-P-X-E-N- G-X-E-E-V-K-P-X-X-E-M-E-T-D-L-K-X-T-G-R- E-X-X-X-R-E-K-T-X-E-X-X-D-A-X-E-E-I-D-X- D-L-E-E-T.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding	p.S938F(1)		skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		GAGAAATATCCCCACAGAAAA	0.463000													29	51					0	0	0.009535	0	0
CMYA5	202333	broad.mit.edu	37	5	79025950	79025950	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr5:79025950C>T	uc003kgc.2	+	2	1434	c.1362C>T	c.(1360-1362)GAC>GAT	p.D454D		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	454						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TGGACCCAGACCAAGAACAGC	0.512000													42	64					0	0	0.014410	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188964	140188964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr5:140188964C>T	uc003lhi.2	+	1	2293	c.2192C>T	c.(2191-2193)GCG>GTG	p.A731V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.A731V|PCDHA4_uc011daa.1_Missense_Mutation_p.A731V	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	731	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCGAGGGCGCGTGCGCTCCG	0.667000													11	47					0	0	0.013537	0	0
PCDHA7	56141	broad.mit.edu	37	5	140216017	140216017	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr5:140216017G>A	uc003lhq.2	+	1	2049	c.2049G>A	c.(2047-2049)TCG>TCA	p.S683S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Silent_p.S683S	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	683	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCGGGCATCGTTGGGCATTG	0.632000													55	104					0	0	0.014410	0	0
PCDHB15	56121	broad.mit.edu	37	5	140625713	140625713	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr5:140625713G>A	uc003lje.2	+	1	567	c.567G>A	c.(565-567)AGG>AGA	p.R189R		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	189	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGGATGGCAGGAAATACCCAG	0.537000													23	27					0	0	0.018920	0	0
SLC26A2	1836	broad.mit.edu	37	5	149357913	149357913	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr5:149357913A>G	uc003lrh.2	+	2	966	c.698A>G	c.(697-699)CAG>CGG	p.Q233R		NM_000112	NP_000103	P50443	S26A2_HUMAN	solute carrier family 26 member 2	233	Helical; (Potential).					integral to plasma membrane|membrane fraction	secondary active sulfate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			GGAGTTTATCAGGTAAGCAGC	0.348000													3	78					0	0	0.004672	0	0
HMMR	3161	broad.mit.edu	37	5	162910053	162910053	+	Silent	SNP	A	G	G			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr5:162910053A>G	uc003lzf.2	+	14	1739	c.1557A>G	c.(1555-1557)TCA>TCG	p.S519S	HMMR_uc003lzh.2_Silent_p.S520S|HMMR_uc003lzg.2_Silent_p.S504S|HMMR_uc011dem.1_Silent_p.S433S|uc003lzi.2_RNA	NM_012484	NP_036616	O75330	HMMR_HUMAN	hyaluronan-mediated motility receptor isoform b	519						cell surface|cytoplasm	hyaluronic acid binding				0	Renal(175;0.000281)	Medulloblastoma(196;0.00853)|all_neural(177;0.0408)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0296)|OV - Ovarian serous cystadenocarcinoma(192;0.0423)|Epithelial(171;0.0848)		AGACCAAGTCAGCACTAAAGG	0.333000													29	43					0	0	0.017118	0	0
ODZ2	57451	broad.mit.edu	37	5	167642213	167642213	+	Silent	SNP	C	G	G			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr5:167642213C>G	uc010jjd.2	+	21	3987	c.3987C>G	c.(3985-3987)CCC>CCG	p.P1329P	ODZ2_uc003lzr.3_Silent_p.P1099P|ODZ2_uc003lzt.3_Silent_p.P702P|ODZ2_uc010jje.2_Silent_p.P593P	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		AGTGTCTACCCTTTGATGAAG	0.567000													43	113					0	0	0.010771	0	0
NPM1	4869	broad.mit.edu	37	5	170827906	170827906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr5:170827906C>T	uc011dex.1	+	9	781	c.646C>T	c.(646-648)CCA>TCA	p.P216S	NPM1_uc003mbh.2_Missense_Mutation_p.P216S|NPM1_uc003mbi.2_Missense_Mutation_p.P216S|NPM1_uc003mbj.2_Intron	NM_002520	NP_002511	P06748	NPM_HUMAN	nucleophosmin 1 isoform 1	216				P -> S (in Ref. 21; AAA36473).	anti-apoptosis|cell aging|CenH3-containing nucleosome assembly at centromere|centrosome cycle|DNA repair|interspecies interaction between organisms|intracellular protein transport|negative regulation of cell proliferation|negative regulation of centrosome duplication|nucleocytoplasmic transport|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|regulation of endodeoxyribonuclease activity|regulation of endoribonuclease activity|ribosome assembly|signal transduction	nucleolus|nucleoplasm|ribonucleoprotein complex|spindle pole centrosome	histone binding|NF-kappaB binding|protein binding|protein heterodimerization activity|protein homodimerization activity|ribosomal large subunit binding|ribosomal small subunit binding|RNA binding|Tat protein binding|transcription coactivator activity|unfolded protein binding		NPM1/ALK(632)	haematopoietic_and_lymphoid_tissue(3109)|skin(1)	3110	Renal(175;0.000159)|Lung NSC(126;0.00576)|all_lung(126;0.00963)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AGACTCAAAACCATCATCAAC	0.378000			T|F 	ALK|RARA|MLF1	NHL|APL|AML								20	42					0	0	0.006320	0	0
HIVEP1	3096	broad.mit.edu	37	6	12120417	12120417	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr6:12120417C>T	uc003nac.2	+	4	568	c.389C>T	c.(388-390)TCC>TTC	p.S130F	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	130					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				GAATCTGTCTCCCCAAAGAAG	0.428000													10	99					0	0	0.008291	0	0
DTNBP1	84062	broad.mit.edu	37	6	15533577	15533577	+	Silent	SNP	G	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr6:15533577G>C	uc003nbm.2	-	8	732	c.561C>G	c.(559-561)ACC>ACG	p.T187T	DTNBP1_uc003nbl.2_Silent_p.T106T|DTNBP1_uc003nbn.2_RNA|DTNBP1_uc003nbo.2_RNA|DTNBP1_uc003nbp.2_Silent_p.T187T|DTNBP1_uc010jph.2_Silent_p.T174T	NM_032122	NP_115498	Q96EV8	DTBP1_HUMAN	dystrobrevin binding protein 1 isoform a	187	Dysbindin.				actin cytoskeleton reorganization|cellular membrane organization|neuron projection morphogenesis|post-Golgi vesicle-mediated transport|regulation of dopamine receptor signaling pathway	axon part|BLOC-1 complex|cell junction|dendritic spine|endoplasmic reticulum membrane|endosome membrane|growth cone|melanosome membrane|nucleus|postsynaptic density|postsynaptic membrane|sarcolemma|synaptic vesicle membrane|synaptosome	identical protein binding				0	Breast(50;0.0289)|Ovarian(93;0.103)	all_hematologic(90;0.0895)	Epithelial(50;0.211)			TCATTTGCTGGGTGTGCTCCA	0.522000									Hermansky-Pudlak_syndrome				23	200					0	0	0.021523	0	0
TNXB	7148	broad.mit.edu	37	6	32037368	32037368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr6:32037368C>T	uc003nzl.2	-	15	5751	c.5549G>A	c.(5548-5550)GGC>GAC	p.G1850D		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1932	Fibronectin type-III 11.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CACACGCTTGCCGTGGTGCAG	0.682000													67	12					0	0	0.014410	0	0
DNAH8	1769	broad.mit.edu	37	6	38899616	38899616	+	Silent	SNP	C	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr6:38899616C>A	uc003ooe.1	+	74	11253	c.10653C>A	c.(10651-10653)ATC>ATA	p.I3551I	DNAH8_uc003oog.1_5'UTR|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AATGTGATATCATGGATACAT	0.254000													79	100					3.98749e-38	4.27112e-38	0.014410	1	0
TMEM63B	55362	broad.mit.edu	37	6	44114650	44114650	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr6:44114650C>T	uc003owr.2	+	11	913	c.849C>T	c.(847-849)TTC>TTT	p.F283F	TMEM63B_uc003owq.1_Silent_p.F283F|TMEM63B_uc003ows.2_Silent_p.F186F|TMEM63B_uc010jyz.2_RNA	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	283						integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			GCCTAATGTTCCTCGATGCAG	0.577000													15	81					0	0	0.008871	0	0
PGK2	5232	broad.mit.edu	37	6	49754324	49754324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr6:49754324C>T	uc003ozu.2	-	1	684	c.577G>A	c.(577-579)GAA>AAA	p.E193K		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	193					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					TAATCTAGTTCCTTCTTCATC	0.458000													85	20					0	0	0.014410	0	0
COL21A1	81578	broad.mit.edu	37	6	55933851	55933851	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr6:55933851C>T	uc003pcs.2	-	22	2316	c.2084G>A	c.(2083-2085)GGA>GAA	p.G695E	COL21A1_uc010jzz.2_Missense_Mutation_p.G80E|COL21A1_uc011dxg.1_Missense_Mutation_p.G80E|COL21A1_uc011dxh.1_Missense_Mutation_p.G80E|COL21A1_uc003pcr.2_Missense_Mutation_p.E53K	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	695	Collagen-like 4.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			TACCTTTTTTCCTTGAATCCC	0.403000													13	4					0	0	0.028581	0	0
SIM1	6492	broad.mit.edu	37	6	100841664	100841664	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr6:100841664G>A	uc003pqj.3	-	10	1476	c.1269C>T	c.(1267-1269)GCC>GCT	p.A423A	SIM1_uc010kcu.2_Silent_p.A423A	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	423	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		CAGGCCTATCGGCGGGGTCCA	0.597000													20	11					0	0	0.012319	0	0
HS3ST5	222537	broad.mit.edu	37	6	114379025	114379025	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr6:114379025G>A	uc003pwg.3	-	2	469	c.437C>T	c.(436-438)TCC>TTC	p.S146F	uc003pwf.2_Intron|HS3ST5_uc003pwh.3_Missense_Mutation_p.S146F	NM_153612	NP_705840	Q8IZT8	HS3S5_HUMAN	heparan sulfate (glucosamine)	146	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification|negative regulation of coagulation|protein sulfation|regulation of virion penetration into host cell	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|protein binding			ovary(1)|pancreas(1)	2		all_cancers(87;0.0587)|Colorectal(196;0.0676)|all_epithelial(87;0.154)		OV - Ovarian serous cystadenocarcinoma(136;0.00937)|all cancers(137;0.0117)|Epithelial(106;0.0274)|GBM - Glioblastoma multiforme(226;0.143)		CTGAGGGTAGGAAAAAGGCAT	0.388000													45	22					0	0	0.011902	0	0
AGPAT4	56895	broad.mit.edu	37	6	161560467	161560467	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr6:161560467G>A	uc003qtr.1	-	8	1256	c.1029C>T	c.(1027-1029)CTC>CTT	p.L343L	AGPAT4_uc003qts.1_Silent_p.L203L|AGPAT4_uc011egb.1_Silent_p.L181L	NM_020133	NP_064518	Q9NRZ5	PLCD_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 4	343	Helical; (Potential).				phospholipid biosynthetic process	integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity|protein binding				0		Breast(66;0.000289)|Ovarian(120;0.0266)|Prostate(117;0.0285)		OV - Ovarian serous cystadenocarcinoma(65;2.23e-17)|BRCA - Breast invasive adenocarcinoma(81;3.58e-05)		CAAAGAAGACGAGGATGAAGC	0.597000													63	39					0	0	0.014410	0	0
CLK2P	1197	broad.mit.edu	37	7	23624979	23624979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr7:23624979G>A	uc003swk.2	-	1	1168	c.518C>T	c.(517-519)CCT>CTT	p.P173L		NR_002711				SubName: Full=cDNA FLJ61616, highly similar to Dual specificity protein kinase CLK2 (EC 2.7.12.1); SubName: Full=CDC-like kinase 2, isoform CRA_c; SubName: Full=Putative uncharacterized protein CLK2;												0						CATCCGGGAAGGGATAGGACC	0.493000													20	56					0	0	0.014323	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72334602	72334602	+	RNA	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr7:72334602C>T	uc010lal.1	-	1		c.5054G>A				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						AGCCTCCAGCCCACCTGATTC	0.592000													54	73					0	0	0.014410	0	0
NSUN5	55695	broad.mit.edu	37	7	72721484	72721484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr7:72721484C>T	uc003txw.2	-	4	443	c.407G>A	c.(406-408)CGA>CAA	p.R136Q	FKBP6_uc003twz.2_Intron|NSUN5_uc003txv.2_Missense_Mutation_p.R136Q|NSUN5_uc003txx.2_Missense_Mutation_p.R98Q|NSUN5_uc011kev.1_Missense_Mutation_p.R136Q	NM_018044	NP_060514	Q96P11	NSUN5_HUMAN	NOL1/NOP2/Sun domain family, member 5 isoform 2	136							methyltransferase activity				0		Lung NSC(55;0.163)				ACGCACAAATCGAGGCAGCTG	0.547000													19	84					0	0	0.008871	0	0
KRIT1	889	broad.mit.edu	37	7	91865832	91865832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr7:91865832G>A	uc003ulq.1	-	5	551	c.380C>T	c.(379-381)CCA>CTA	p.P127L	KRIT1_uc010lev.1_5'UTR|KRIT1_uc003ulr.1_Missense_Mutation_p.P127L|KRIT1_uc003uls.1_Missense_Mutation_p.P127L|KRIT1_uc003ult.1_Missense_Mutation_p.P127L|KRIT1_uc003ulu.1_Missense_Mutation_p.P127L|KRIT1_uc003ulv.1_Missense_Mutation_p.P127L	NM_194456	NP_919438	O00522	KRIT1_HUMAN	krev interaction trapped 1 isoform 1	127					angiogenesis|cell redox homeostasis|negative regulation of angiogenesis|negative regulation of endothelial cell apoptosis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|regulation of establishment of cell polarity|small GTPase mediated signal transduction	cell-cell junction|cytoskeleton	protein binding|small GTPase regulator activity			ovary(2)|lung(1)	3	all_cancers(62;1.04e-09)|all_epithelial(64;5.75e-09)|Breast(17;0.00206)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TGGGCATCCTGGGGTATATGT	0.323000									Familial_Cerebral_Cavernous_Angioma				23	37					0	0	0.024334	0	0
ZAN	7455	broad.mit.edu	37	7	100350192	100350192	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr7:100350192C>T	uc003uwj.2	+	14	2629	c.2464C>T	c.(2464-2466)CCC>TCC	p.P822S	ZAN_uc003uwk.2_Missense_Mutation_p.P822S|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	822	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CATGGAAAAACCCACTCTCCC	0.512000													31	37					0	0	0.010818	0	0
SH2B2	10603	broad.mit.edu	37	7	101950084	101950084	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr7:101950084G>A	uc011kko.1	+	3	984	c.939G>A	c.(937-939)AAG>AAA	p.K313K		NM_020979	NP_066189	O14492	SH2B2_HUMAN	SH2B adaptor protein 2	270	PH.				blood coagulation|insulin receptor signaling pathway|intracellular signal transduction	cytosol|plasma membrane	JAK pathway signal transduction adaptor activity|SH3/SH2 adaptor activity|signal transducer activity				0						TGCCAGAGAAGGATAACACAT	0.587000													6	8					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	7	124116708	124116708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr7:124116708C>T	uc011kod.1	+	1	284	c.284C>T	c.(283-285)CCA>CTA	p.P95L		NM_001085395	NP_001078864			RecName: Full=Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 2;          Short=CTD phosphatase SSU72-like protein 2;          EC=3.1.3.16;																		AAGCCTGGCCCAGAAAGATTT	0.438000													26	19					0	0	0.027356	0	0
KLHDC10	23008	broad.mit.edu	37	7	129765758	129765758	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr7:129765758C>T	uc003vpj.1	+	7	1053	c.918C>T	c.(916-918)CCC>CCT	p.P306P	KLHDC10_uc003vpk.1_Silent_p.P277P|KLHDC10_uc010lmb.1_Silent_p.P203P	NM_014997	NP_055812	Q6PID8	KLD10_HUMAN	kelch domain containing 10	306	Kelch 4.										0						CAACAAAACCCCATGAAAAAA	0.274000													12	17					0	0	0.010729	0	0
TSGA13	114960	broad.mit.edu	37	7	130353978	130353978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr7:130353978C>T	uc003vqi.2	-	8	1161	c.704G>A	c.(703-705)CGG>CAG	p.R235Q	COPG2_uc003vqh.1_5'Flank|TSGA13_uc003vqj.2_Missense_Mutation_p.R235Q	NM_052933	NP_443165	Q96PP4	TSG13_HUMAN	testis specific, 13	235										ovary(2)	2	Melanoma(18;0.0435)					CAGTGGTTCCCGAATCACTTT	0.567000													58	51					0	0	0.014410	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				42	41					0	0	0.011902	0	0
CSMD1	64478	broad.mit.edu	37	8	3216851	3216851	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr8:3216851C>T	uc011kwk.1	-	21	3520	c.3130G>A	c.(3130-3132)GAG>AAG	p.E1044K	CSMD1_uc011kwj.1_Missense_Mutation_p.E436K|CSMD1_uc003wqe.2_Missense_Mutation_p.E200K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1044	Sushi 6.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCACATGGCTCCAGGTCATAT	0.428000													20	7					0	0	0.014323	0	0
MCPH1	79648	broad.mit.edu	37	8	6302915	6302915	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr8:6302915C>T	uc003wqi.2	+	8	1740	c.1672C>T	c.(1672-1674)CTG>TTG	p.L558L	MCPH1_uc003wqh.2_Silent_p.L558L|MCPH1_uc011kwl.1_Silent_p.L510L	NM_024596	NP_078872	Q8NEM0	MCPH1_HUMAN	microcephalin	558						microtubule organizing center				central_nervous_system(1)|skin(1)	2		Hepatocellular(245;0.0663)		Colorectal(4;0.0505)		AGCGGTTGGTCTGAAAAGCAC	0.418000													16	10					0	0	0.006122	0	0
MSRA	4482	broad.mit.edu	37	8	10159055	10159055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr8:10159055C>T	uc003wsx.2	+	4	540	c.343C>T	c.(343-345)CAT>TAT	p.H115Y	MSRA_uc011kwx.1_Missense_Mutation_p.H75Y|MSRA_uc011kwy.1_Missense_Mutation_p.H72Y|MSRA_uc003wsz.2_Missense_Mutation_p.H72Y|MSRA_uc003wsy.2_Missense_Mutation_p.H49Y	NM_012331	NP_036463	Q9UJ68	MSRA_HUMAN	methionine sulfoxide reductase A isoform a	115					methionine metabolic process|protein modification process|response to oxidative stress	mitochondrion|nucleus	peptide-methionine-(S)-S-oxide reductase activity				0		Myeloproliferative disorder(644;0.178)			L-Methionine(DB00134)	AAAAACTGGCCATGCAGAAGT	0.413000													24	15					0	0	0.024334	0	0
CHRNA6	8973	broad.mit.edu	37	8	42611246	42611246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr8:42611246C>T	uc003xpj.2	-	5	1142	c.1096G>A	c.(1096-1098)GGC>AGC	p.G366S	CHRNA6_uc011lcw.1_Missense_Mutation_p.G351S	NM_004198	NP_004189	Q15825	ACHA6_HUMAN	cholinergic receptor, nicotinic, alpha 6	366	Cytoplasmic.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(13;3.33e-12)|Lung NSC(13;9.17e-11)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00439)|Lung NSC(58;0.0124)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.0252)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GCATCAGAGCCTGTGCCCCTT	0.567000													27	21					0	0	0.027356	0	0
PXDNL	137902	broad.mit.edu	37	8	52321966	52321966	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr8:52321966G>C	uc003xqu.3	-	17	2319	c.2218C>G	c.(2218-2220)CCC>GCC	p.P740A	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	740					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CCCCACGTGGGCTGCTGCAGG	0.701000													4	37					0	0	0.009096	0	0
RB1CC1	9821	broad.mit.edu	37	8	53580634	53580634	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr8:53580634G>A	uc003xre.3	-	8	1678	c.1120C>T	c.(1120-1122)CAG>TAG	p.Q374*	RB1CC1_uc003xrf.3_Nonsense_Mutation_p.Q374*	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	374					autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				GCAATCATCTGGTCCAGGGCG	0.403000													29	21					0	0	0.010818	0	0
C8orf34	116328	broad.mit.edu	37	8	69621313	69621313	+	Silent	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr8:69621313C>T	uc010lyz.2	+	9	1117	c.1068C>T	c.(1066-1068)TTC>TTT	p.F356F	C8orf34_uc003xyb.2_Silent_p.F331F	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	356					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			CAGATTCATTCGGTAAGTTTT	0.343000													5	18					0	0	0.001984	0	0
TM7SF4	81501	broad.mit.edu	37	8	105361141	105361141	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr8:105361141C>T	uc003ylx.1	+	2	410	c.361C>T	c.(361-363)CTC>TTC	p.L121F		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	121					osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CTTTAAAGGTCTCCTAGATGG	0.418000													13	41					0	0	0.020292	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110503293	110503293	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr8:110503293C>A	uc003yne.2	+	61	10181	c.10077C>A	c.(10075-10077)GAC>GAA	p.D3359E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3359	Extracellular (Potential).|PbH1 6.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ATGGATTGGACATAGATGACA	0.378000										HNSCC(38;0.096)			19	111					1.10513e-12	1.15475e-12	0.014323	1	0
BAI1	575	broad.mit.edu	37	8	143570401	143570401	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr8:143570401G>A	uc003ywm.2	+	14	2641	c.2458G>A	c.(2458-2460)GAT>AAT	p.D820N		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	820	Extracellular (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					TCCAGAGGCCGATGAAGCATC	0.662000													10	21					0	0	0.010729	0	0
SLURP1	57152	broad.mit.edu	37	8	143822586	143822586	+	Missense_Mutation	SNP	C	T	T	rs139944345		TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr8:143822586C>T	uc003ywy.2	-	3	313	c.287G>A	c.(286-288)CGA>CAA	p.R96Q		NM_020427	NP_065160	P55000	SLUR1_HUMAN	ARS component B precursor	96					cell activation|cell adhesion	extracellular space	cytokine activity				0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					GCAGAGGTCTCGGAAGCAGCA	0.662000													35	31					0	0	0.011902	0	0
FAM83H	286077	broad.mit.edu	37	8	144809676	144809676	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr8:144809676G>A	uc003yzk.2	-	5	2024	c.1955C>T	c.(1954-1956)CCA>CTA	p.P652L	FAM83H_uc010mfk.1_RNA	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H	652					biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			CTCGCGCTCTGGGCCGTTGCC	0.751000													10	5					0	0	0.008291	0	0
SHB	6461	broad.mit.edu	37	9	37955978	37955978	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr9:37955978G>A	uc004aax.2	-	4	1696	c.1128C>T	c.(1126-1128)GCC>GCT	p.A376A		NM_003028	NP_003019	Q15464	SHB_HUMAN	Src homology 2 domain containing adaptor protein	376	Mediates interaction with LAT, FAK1, JAK1 and JAK3.				angiogenesis|apoptosis|cell differentiation|signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity			central_nervous_system(2)|skin(1)	3		all_epithelial(88;0.122)		GBM - Glioblastoma multiforme(29;3.27e-05)|Lung(182;0.0658)		CCCCTCCAGGGGCACGAAGCT	0.602000													3	0					0	0	0.004672	0	0
TJP2	9414	broad.mit.edu	37	9	71869274	71869274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr9:71869274G>A	uc004ahe.2	+	23	3757	c.3557G>A	c.(3556-3558)CGG>CAG	p.R1186Q	TJP2_uc011lrs.1_Missense_Mutation_p.R1016Q|TJP2_uc004ahf.2_Missense_Mutation_p.R1039Q|TJP2_uc011lru.1_Missense_Mutation_p.R1153Q|TJP2_uc011lrv.1_Missense_Mutation_p.R1208Q|TJP2_uc010mom.1_3'UTR	NM_004817	NP_004808	Q9UDY2	ZO2_HUMAN	tight junction protein 2 (zona occludens 2)	1186					cellular component disassembly involved in apoptosis	adherens junction|cytoplasm|nucleus|tight junction	guanylate kinase activity|protein binding				0						GCCCGATACCGGGACACAGAA	0.587000													16	42					0	0	0.024245	0	0
ROR2	4920	broad.mit.edu	37	9	94487029	94487029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr9:94487029C>T	uc004arj.1	-	9	1946	c.1747G>A	c.(1747-1749)GTG>ATG	p.V583M	ROR2_uc004ari.1_Missense_Mutation_p.V443M	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	583	Cytoplasmic (Potential).|Protein kinase.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						GCGGACTTCACCGTGCGGTCA	0.627000													13	7					0	0	0.020292	0	0
OR1K1	392392	broad.mit.edu	37	9	125562678	125562678	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr9:125562678A>C	uc011lze.1	+	1	277	c.277A>C	c.(277-279)ATC>CTC	p.I93L		NM_080859	NP_543135	Q8NGR3	OR1K1_HUMAN	olfactory receptor, family 1, subfamily K,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGACCACTCCATCTCGCTGGC	0.572000													39	69					0	0	0.014410	0	0
SLC2A6	11182	broad.mit.edu	37	9	136339154	136339154	+	Silent	SNP	G	A	A	rs139166314	byFrequency	TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr9:136339154G>A	uc004cee.2	-	7	1079	c.984C>T	c.(982-984)ATC>ATT	p.I328I	SLC2A6_uc004cef.2_Silent_p.I328I|SLC2A6_uc004ceg.2_Silent_p.I305I	NM_017585	NP_060055	Q9UGQ3	GTR6_HUMAN	solute carrier family 2 (facilitated glucose	328	Helical; Name=8; (Potential).					integral to membrane|plasma membrane	D-glucose transmembrane transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;8.47e-08)|Epithelial(140;9.37e-07)|all cancers(34;1.03e-05)		TGAGGGCGGCGATCAGCACGG	0.682000													10	11					0	0	0.010729	0	0
XIST	7503	broad.mit.edu	37	X	73067839	73067839	+	RNA	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chrX:73067839G>A	uc004ebm.1	-	1		c.4750C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GTCTTGACTAGAGGTCATCCA	0.418000													25	6					0	0	0.027356	0	0
XIST	7503	broad.mit.edu	37	X	73070880	73070880	+	RNA	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chrX:73070880G>A	uc004ebm.1	-	1		c.1709C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CCAGGTCTTCGCTGAGTAGCT	0.502000													48	13					0	0	0.014410	0	0
NUP62CL	54830	broad.mit.edu	37	X	106396494	106396494	+	Silent	SNP	T	C	C			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chrX:106396494T>C	uc004ena.2	-	7	697	c.438A>G	c.(436-438)GAA>GAG	p.E146E	NUP62CL_uc004enb.2_RNA	NM_017681	NP_060151	Q9H1M0	N62CL_HUMAN	nucleoporin 62kDa C-terminal like	146	Potential.				protein transport	nuclear pore	structural constituent of nuclear pore				0						GAAATTCTAGTTCCTGCTGCT	0.378000													56	14					0	0	0.014410	0	0
HTR2C	3358	broad.mit.edu	37	X	114141216	114141216	+	Silent	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chrX:114141216G>A	uc004epu.1	+	6	1343	c.615G>A	c.(613-615)ACG>ACA	p.T205T	HTR2C_uc010nqc.1_Silent_p.T205T|HTR2C_uc004epv.1_Missense_Mutation_p.D174N	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	205	Extracellular (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	TGAACAACACGACGTGCGTGC	0.453000													82	19					0	0	0.014410	0	0
GPR50	9248	broad.mit.edu	37	X	150349430	150349430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chrX:150349430C>T	uc010ntg.1	+	2	1510	c.1375C>T	c.(1375-1377)CAT>TAT	p.H459Y		NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	459	Cytoplasmic (Potential).|Pro-rich.				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TGACTCTGTCCATTTCAAGCC	0.547000													242	72					0	0	0.014410	0	0
CSAG1	158511	broad.mit.edu	37	X	151909159	151909159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chrX:151909159G>A	uc004fge.2	+	5	516	c.188G>A	c.(187-189)AGG>AAG	p.R63K	CSAG1_uc004fgf.2_Missense_Mutation_p.R63K|CSAG1_uc004fgd.2_RNA	NM_153478	NP_705611	Q6PB30	CSAG1_HUMAN	chondrosarcoma associated gene 1 precursor	63								p.R63M(1)		ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CAACCCAAAAGGGAAAAGGGA	0.522000													35	12					0	0	0.025465	0	0
WDR16	146845	broad.mit.edu	37	17	9541993	9541994	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr17:9541993_9541994insA	uc002gly.2	+	12	1609_1610	c.1540_1541insA	c.(1540-1542)GAGfs	p.E514fs	WDR16_uc002glz.2_Frame_Shift_Ins_p.E446fs|WDR16_uc010coc.2_Frame_Shift_Ins_p.E524fs	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	514	WD 9.					cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						TCACCCTGAGGAGTTCCAGATC	0.436													17	90	---	---	---	---					
MIR191	406966	broad.mit.edu	37	3	49058116	49058116	+	RNA	DEL	G	-	-			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr3:49058116delG	hsa-mir-191|MI0000465	-			c.27delG			DALRD3_uc003cvk.1_5'Flank|DALRD3_uc003cvl.1_5'Flank|DALRD3_uc003cvm.1_Intron|DALRD3_uc010hko.1_Intron|DALRD3_uc011bca.1_5'Flank|uc011bcb.1_5'Flank|MIR425_hsa-mir-425|MI0001448_5'Flank|NDUFAF3_uc003cvn.2_Intron|uc003cvo.1_RNA|NDUFAF3_uc003cvp.2_5'Flank|NDUFAF3_uc003cvq.2_5'Flank|NDUFAF3_uc003cvr.2_5'Flank|NDUFAF3_uc003cvs.2_5'Flank																	0						AGCTGCTTTTGGGATTCCGTT	0.677													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	100609643	100609645	+	In_Frame_Del	DEL	TGC	-	-			TCGA-EE-A3J3-06A-11D-A20D-08	TCGA-EE-A3J3-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca1af14c-b29b-4a85-9f44-a459487a1474	65d94e0e-09ff-464d-89e1-02eab36236a1	g.chr7:100609643_100609645delTGC	uc003uxl.1	+	8	2875_2877	c.2075_2077delTGC	c.(2074-2079)GTGCTG>GTG	p.L696del	uc003uxm.1_5'Flank|uc003uxn.1_RNA|uc010lhn.1_Intron					SubName: Full=Intestinal mucin; Flags: Fragment;																		GCGCTGCTGGTGCTGCTGCTGCT	0.675													3	4	---	---	---	---					
