Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ACTRT2	140625	broad.mit.edu	37	1	2939081	2939081	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:2939081G>A	uc001ajz.2	+	1	1036	c.831G>A	c.(829-831)TCG>TCA	p.S277S		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	277						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		CCGGGCTCTCGAATATGGTCT	0.642													40	28					0	0	1	0	0
UTS2	10911	broad.mit.edu	37	1	7907881	7907881	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:7907881C>T	uc001aor.2	-	4	361	c.320G>A	c.(319-321)TGG>TAG	p.W107*	UTS2_uc001aoq.2_Nonsense_Mutation_p.W107*|UTS2_uc001aos.2_Nonsense_Mutation_p.W122*	NM_006786	NP_006777	O95399	UTS2_HUMAN	urotensin 2 isoform b preproprotein	107					muscle contraction|regulation of blood pressure|synaptic transmission	extracellular space	hormone activity				0	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;1.38e-20)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.26e-71)|GBM - Glioblastoma multiforme(8;5.15e-36)|Colorectal(212;1.27e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000386)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|STAD - Stomach adenocarcinoma(132;0.000951)|READ - Rectum adenocarcinoma(331;0.0642)		GTATGGTTTCCAGATTCTGGC	0.378													46	28					0	0	1	0	0
AADACL4	343066	broad.mit.edu	37	1	12726701	12726701	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:12726701C>T	uc001auf.2	+	4	1179	c.1179C>T	c.(1177-1179)TCC>TCT	p.S393S		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	393	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		TCCCATGTTCCCTGAAGATTG	0.483													37	19					0	0	1	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12854524	12854524	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:12854524G>A	uc001auj.1	+	3	851	c.748G>A	c.(748-750)GAA>AAA	p.E250K		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	250											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GTCAGATAATGAACTCCAAGG	0.443													70	41					0	0	1	0	0
LOC440563	440563	broad.mit.edu	37	1	13183370	13183370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:13183370C>T	uc010obg.1	-	1	598	c.503G>A	c.(502-504)GGA>GAA	p.G168E		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	168						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						CTTGGAAGATCCCCGCTTTCC	0.493													62	310					0	0	1	0	0
DNAJC16	23341	broad.mit.edu	37	1	15894599	15894599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:15894599C>T	uc001aws.2	+	15	2396	c.2276C>T	c.(2275-2277)TCT>TTT	p.S759F	DNAJC16_uc001awt.2_Missense_Mutation_p.S447F|DNAJC16_uc001awu.2_RNA	NM_015291	NP_056106	Q9Y2G8	DJC16_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 16	759	Extracellular (Potential).				cell redox homeostasis|protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			urinary_tract(1)|lung(1)|kidney(1)	3		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00173)|all_lung(284;0.00459)|Lung NSC(340;0.00499)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		AGCAAGCTCTCTTTATGGATG	0.488													29	14					0	0	1	0	0
ARHGEF19	128272	broad.mit.edu	37	1	16531317	16531317	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:16531317A>T	uc001ayc.1	-	12	1981	c.1844T>A	c.(1843-1845)CTG>CAG	p.L615Q	ARHGEF19_uc009voo.1_5'UTR|ARHGEF19_uc001ayb.1_Missense_Mutation_p.L92Q	NM_153213	NP_694945	Q8IW93	ARHGJ_HUMAN	Rho guanine nucleotide exchange factor (GEF) 19	615	PH.				regulation of actin cytoskeleton organization	intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			skin(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|Colorectal(212;3.48e-07)|COAD - Colon adenocarcinoma(227;2.19e-05)|BRCA - Breast invasive adenocarcinoma(304;9.46e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0117)|READ - Rectum adenocarcinoma(331;0.0649)		CTTGCTGGACAGCTTCAGCTT	0.597													10	4					0	0	1	0	0
EPHA8	2046	broad.mit.edu	37	1	22903156	22903156	+	Silent	SNP	G	A	A	rs55952392		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:22903156G>A	uc001bfx.1	+	3	731	c.606G>A	c.(604-606)AAG>AAA	p.K202K	EPHA8_uc001bfw.2_Silent_p.K202K	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	202	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TCTACTATAAGAAGTGCCCTG	0.642													13	12					0	0	1	0	0
STMN1	3925	broad.mit.edu	37	1	26230178	26230178	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:26230178A>C	uc001bkz.2	-	3	504	c.140T>G	c.(139-141)CTG>CGG	p.L47R	STMN1_uc010oev.1_Missense_Mutation_p.L47R|STMN1_uc001bla.2_Missense_Mutation_p.L47R|STMN1_uc001blb.2_Missense_Mutation_p.L47R|STMN1_uc001blc.2_Missense_Mutation_p.L47R	NM_203401	NP_981946	P16949	STMN1_HUMAN	stathmin 1 isoform a	47	Potential.				cell differentiation|intracellular signal transduction|microtubule depolymerization|mitotic spindle organization|nervous system development|response to virus	cytoplasm|microtubule	signal transducer activity|tubulin binding				0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000163)|all_lung(284;0.000234)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0505)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.85e-25)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|BRCA - Breast invasive adenocarcinoma(304;0.000946)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.013)|READ - Rectum adenocarcinoma(331;0.0649)		AATTTCCTCCAGGGAAAGATC	0.448													42	108					0	0	1	0	0
WDTC1	23038	broad.mit.edu	37	1	27622887	27622887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:27622887C>T	uc009vst.2	+	10	1479	c.944C>T	c.(943-945)TCG>TTG	p.S315L	WDTC1_uc001bno.2_Missense_Mutation_p.S315L|WDTC1_uc001bnp.1_RNA|WDTC1_uc001bnq.2_5'UTR	NM_015023	NP_055838	Q8N5D0	WDTC1_HUMAN	WD and tetratricopeptide repeats 1	315							protein binding			ovary(1)|central_nervous_system(1)	2		all_cancers(24;3.12e-19)|all_epithelial(13;4.18e-18)|Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.00257)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0443)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-27)|Colorectal(126;8.83e-09)|COAD - Colon adenocarcinoma(152;1.02e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000544)|KIRC - Kidney renal clear cell carcinoma(1967;0.00201)|STAD - Stomach adenocarcinoma(196;0.00321)|READ - Rectum adenocarcinoma(331;0.0476)		TGCCACTCCTCGGGGGGTAAG	0.522													72	76					0	0	1	0	0
PTPRU	10076	broad.mit.edu	37	1	29641914	29641914	+	Silent	SNP	C	T	T	rs139267044	byFrequency	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:29641914C>T	uc001bru.2	+	24	3398	c.3288C>T	c.(3286-3288)ATC>ATT	p.I1096I	PTPRU_uc001brv.2_Silent_p.I1092I|PTPRU_uc001brw.2_Silent_p.I1086I|PTPRU_uc009vtq.2_Silent_p.I1092I|PTPRU_uc009vtr.2_Silent_p.I1083I	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	1096	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		GTTGCTATATCGTCCTGGATG	0.582													28	87					0	0	1	0	0
LCK	3932	broad.mit.edu	37	1	32745577	32745577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:32745577G>A	uc001bux.2	+	11	1315	c.1177G>A	c.(1177-1179)GAG>AAG	p.E393K	LCK_uc001buy.2_Missense_Mutation_p.E393K|LCK_uc001buz.2_Missense_Mutation_p.E423K|LCK_uc010ohc.1_Missense_Mutation_p.E437K|LCK_uc001bva.2_Missense_Mutation_p.E400K	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	393	Protein kinase.				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	TGAGGACAACGAGTACACAGC	0.557			T	TRB@	T-ALL								41	28					0	0	1	0	0
LCK	3932	broad.mit.edu	37	1	32745691	32745691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:32745691C>T	uc001bux.2	+	12	1345	c.1207C>T	c.(1207-1209)CCC>TCC	p.P403S	LCK_uc001buy.2_Missense_Mutation_p.P403S|LCK_uc001buz.2_Missense_Mutation_p.P433S|LCK_uc010ohc.1_Missense_Mutation_p.P447S|LCK_uc001bva.2_Missense_Mutation_p.P410S	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	403	Protein kinase.				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	GGCCAAGTTTCCCATTAAGTG	0.547			T	TRB@	T-ALL								27	17					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34180370	34180370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:34180370C>T	uc001bxn.1	-	21	3132	c.3103G>A	c.(3103-3105)GAC>AAC	p.D1035N	CSMD2_uc001bxm.1_Missense_Mutation_p.D1075N	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1035	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGCTCCAAGTCGTACTCTGGA	0.592													13	33					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34192284	34192284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:34192284G>A	uc001bxn.1	-	16	2280	c.2251C>T	c.(2251-2253)CCC>TCC	p.P751S	CSMD2_uc001bxm.1_Missense_Mutation_p.P791S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	751	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCACCACAGGGAGCTGGGGGG	0.522													5	32					0	0	1	0	0
HMGB4	127540	broad.mit.edu	37	1	34330038	34330038	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:34330038G>A	uc001bxp.2	+	2	1989	c.246G>A	c.(244-246)AGG>AGA	p.R82R	CSMD2_uc001bxm.1_Intron|CSMD2_uc001bxn.1_Intron|HMGB4_uc001bxq.2_Silent_p.R8R	NM_145205	NP_660206	Q8WW32	HMGB4_HUMAN	HMG2 like isoform 1	82						nucleus	DNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				TTGGCAAGAGGAAGAAACGGA	0.502													52	72					0	0	1	0	0
DLGAP3	58512	broad.mit.edu	37	1	35331759	35331759	+	Silent	SNP	G	A	A	rs139407093		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:35331759G>A	uc001byc.2	-	10	2865	c.2865C>T	c.(2863-2865)TCC>TCT	p.S955S		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	955					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				TGTGGCGGAAGGAAGCGGCGC	0.567													4	18					0	0	1	0	0
C1orf113	79729	broad.mit.edu	37	1	36785872	36785872	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:36785872C>T	uc010oia.1	+	14	1636	c.1608C>T	c.(1606-1608)CCC>CCT	p.P536P	C1orf113_uc010oib.1_Silent_p.P425P|C1orf113_uc010oic.1_RNA|C1orf113_uc009vuz.1_Silent_p.P182P	NM_001162530	NP_001156002	A4FU49	SH321_HUMAN	SH3 domain-containing protein C1orf113 isoform	420											0		Myeloproliferative disorder(586;0.0393)				CAGAGGCACCCCCACCCCAGC	0.582													19	47					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37337858	37337858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:37337858C>T	uc001caz.2	-	4	798	c.663G>A	c.(661-663)ATG>ATA	p.M221I	GRIK3_uc001cba.1_Missense_Mutation_p.M221I	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	221	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	GGCCTCGCTTCATCTCCTTGA	0.587													42	34					0	0	1	0	0
RSPO1	284654	broad.mit.edu	37	1	38082197	38082197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:38082197C>T	uc001cbl.1	-	5	1033	c.245G>A	c.(244-246)GGA>GAA	p.G82E	RSPO1_uc001cbm.1_Missense_Mutation_p.G82E|RSPO1_uc009vvf.1_Missense_Mutation_p.G55E|RSPO1_uc009vvg.1_Missense_Mutation_p.G82E	NM_001038633	NP_001033722	Q2MKA7	RSPO1_HUMAN	R-spondin1 precursor	82	FU 1.				positive regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization		heparin binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GTCGAAGTATCCAGGTGGGCA	0.617													38	60					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39801640	39801640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:39801640C>T	uc010oiu.1	+	1	4831	c.4700C>T	c.(4699-4701)TCC>TTC	p.S1567F	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	3132					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ACAGGCCCATCCCAAATTTCC	0.478													22	47					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	41978750	41978750	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:41978750G>A	uc001cgz.3	-	8	7355	c.6142C>T	c.(6142-6144)CGA>TGA	p.R2048*	HIVEP3_uc001cha.3_Nonsense_Mutation_p.R2048*|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	2048					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				ACATGTGCTCGAGGGGCCAGT	0.637													17	51					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42048784	42048784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:42048784G>A	uc001cgz.3	-	4	2898	c.1685C>T	c.(1684-1686)TCC>TTC	p.S562F	HIVEP3_uc001cha.3_Missense_Mutation_p.S562F|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	562	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GTCATCGAAGGAGTAGCTACC	0.612													50	39					0	0	1	0	0
CCDC30	728621	broad.mit.edu	37	1	43110413	43110413	+	Missense_Mutation	SNP	C	T	T	rs141315303	by1000genomes	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:43110413C>T	uc009vwk.1	+	13	1935	c.1825C>T	c.(1825-1827)CGT>TGT	p.R609C	CCDC30_uc001chm.2_Missense_Mutation_p.R307C|CCDC30_uc001chn.2_Missense_Mutation_p.R398C	NM_001080850	NP_001074319	Q5VVM6	CCD30_HUMAN	coiled-coil domain containing 30	609	Potential.										0						AAATAGTCTTCGTCTCACACA	0.388													39	42					0	0	1	0	0
MPL	4352	broad.mit.edu	37	1	43805659	43805660	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:43805659_43805660GG>AA	uc001ciw.2	+	5	760_761	c.715_716GG>AA	c.(715-717)GGA>AAA	p.G239K	MPL_uc001civ.2_Missense_Mutation_p.G239K|MPL_uc009vwr.2_Missense_Mutation_p.G232K	NM_005373	NP_005364	P40238	TPOR_HUMAN	myeloproliferative leukemia virus oncogene	239	Extracellular (Potential).				cell proliferation|platelet activation	integral to plasma membrane	cytokine receptor activity			haematopoietic_and_lymphoid_tissue(361)|upper_aerodigestive_tract(1)|pancreas(1)	363	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				AGCAGAGGGTGGAAGCTGCCTC	0.579			Mis		MPD	MPD	congenital amegakaryocytic thrombocytopenia						8	57					0	0	1	0	0
SLC6A9	6536	broad.mit.edu	37	1	44468292	44468292	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:44468292G>A	uc001cll.2	-	7	1161	c.969C>T	c.(967-969)CCC>CCT	p.P323P	SLC6A9_uc009vxe.2_Silent_p.P179P|SLC6A9_uc010okm.1_Silent_p.P250P|SLC6A9_uc001clm.2_Silent_p.P269P|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Silent_p.P254P|SLC6A9_uc001cln.2_Silent_p.P250P|SLC6A9_uc010oko.1_Silent_p.P139P|SLC6A9_uc010okp.1_RNA	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	323	Helical; Name=5; (Potential).					integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	GCACCACGTAGGGGAACGTGG	0.607													52	53					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47395951	47395951	+	Missense_Mutation	SNP	C	T	T	rs140052682	by1000genomes	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:47395951C>T	uc001cqp.3	-	12	1447	c.1396G>A	c.(1396-1398)GAG>AAG	p.E466K		NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	466					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	ACCTTCAGCTCGTTCATGGCA	0.547													40	132					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47403767	47403767	+	Missense_Mutation	SNP	C	T	T	rs145173494	by1000genomes	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:47403767C>T	uc001cqp.3	-	2	289	c.238G>A	c.(238-240)GAG>AAG	p.E80K	CYP4A11_uc001cqq.2_Missense_Mutation_p.E80K|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	80					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	GGGAATGTCTCCACCCATTTC	0.488													40	111					0	0	1	0	0
CYP4X1	260293	broad.mit.edu	37	1	47514289	47514289	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:47514289G>A	uc001cqt.2	+	10	1510	c.1260G>A	c.(1258-1260)TGG>TGA	p.W420*	CYP4X1_uc001cqr.2_Nonsense_Mutation_p.W419*|CYP4X1_uc001cqs.2_Nonsense_Mutation_p.W355*	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	420						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						CTGCTGTCTGGAAAAACCCAA	0.418													52	123					0	0	1	0	0
ECHDC2	55268	broad.mit.edu	37	1	53373571	53373571	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:53373571G>A	uc001cup.3	-	4	579	c.333C>T	c.(331-333)GTC>GTT	p.V111V	ECHDC2_uc001cun.2_Silent_p.V65V|ECHDC2_uc001cuo.3_Silent_p.V111V|ECHDC2_uc010onk.1_Silent_p.V65V|ECHDC2_uc010onl.1_Silent_p.V65V|ECHDC2_uc010onm.1_Silent_p.V65V|ECHDC2_uc010onn.1_Silent_p.V65V	NM_018281	NP_060751	Q86YB7	ECHD2_HUMAN	enoyl Coenzyme A hydratase domain containing 2	111					fatty acid metabolic process	mitochondrion	lyase activity			central_nervous_system(1)	1						GGAGTCGCTGGACAAACACCC	0.612													16	78					0	0	1	0	0
PCSK9	255738	broad.mit.edu	37	1	55518375	55518375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:55518375G>A	uc001cyf.1	+	5	1001	c.710G>A	c.(709-711)CGG>CAG	p.R237Q	PCSK9_uc010ool.1_RNA|PCSK9_uc010oom.1_RNA	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	237	Peptidase S8.		R -> W.		cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						GTCAGCGGCCGGGATGCCGGC	0.647													17	38					0	0	1	0	0
MYSM1	114803	broad.mit.edu	37	1	59131237	59131237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:59131237G>A	uc009wab.1	-	17	2121	c.2098C>T	c.(2098-2100)CCC>TCC	p.P700S	MYSM1_uc009waa.1_Missense_Mutation_p.P106S|MYSM1_uc001czc.2_RNA	NM_001085487	NP_001078956	Q5VVJ2	MYSM1_HUMAN	Myb-like, SWIRM and MPN domains 1	700					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin remodeling complex	DNA binding|histone binding|metal ion binding|metallopeptidase activity|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(1)	1	all_cancers(7;9.36e-06)					TATGGTAAGGGATTATTTCGA	0.348													20	56					0	0	1	0	0
L1TD1	54596	broad.mit.edu	37	1	62676102	62676102	+	Silent	SNP	C	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:62676102C>A	uc001dae.3	+	4	1958	c.1656C>A	c.(1654-1656)ACC>ACA	p.T552T		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	552										ovary(1)|skin(1)	2						CCTGTCTGACCTTATGTTTGG	0.453													52	41					2.41709e-19	2.43887e-19	1	1	0
CLCA1	1179	broad.mit.edu	37	1	86959195	86959195	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:86959195C>T	uc001dlt.2	+	10	1722	c.1593C>T	c.(1591-1593)CTC>CTT	p.L531L	CLCA1_uc001dls.1_Silent_p.L470L	NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	531					calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		AAATCCTTCTCTGGGATCCCA	0.507													39	39					0	0	1	0	0
BTBD8	284697	broad.mit.edu	37	1	92568110	92568110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:92568110C>T	uc001doo.2	+	3	695	c.428C>T	c.(427-429)TCA>TTA	p.S143L	BTBD8_uc010otc.1_RNA	NM_183242	NP_899065	Q5XKL5	BTBD8_HUMAN	BTB (POZ) domain containing 8	143						nucleus				ovary(1)	1		all_lung(203;0.0484)|Lung NSC(277;0.126)|Glioma(108;0.222)		all cancers(265;0.0153)|Epithelial(280;0.0982)		ATTGGGATATCACAAAAGCAA	0.308													38	23					0	0	1	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94639802	94639802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:94639802C>T	uc001dqj.3	-	23	3778	c.3409G>A	c.(3409-3411)GAG>AAG	p.E1137K	ARHGAP29_uc009wdq.1_Intron	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	1137					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TCAGATGCCTCTCTCACTGAC	0.493													61	49					0	0	1	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94643672	94643672	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:94643672C>T	uc001dqj.3	-	21	2901	c.2532G>A	c.(2530-2532)GTG>GTA	p.V844V	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Silent_p.V410V	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	844	Rho-GAP.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		GTCCAAATATCACCCCCAAGT	0.423													77	73					0	0	1	0	0
ALG14	199857	broad.mit.edu	37	1	95538398	95538398	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:95538398G>A	uc001dra.2	-	1	110	c.57C>T	c.(55-57)ATC>ATT	p.I19I		NM_144988	NP_659425	Q96F25	ALG14_HUMAN	asparagine-linked glycosylation 14 homolog	19	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity				0		all_lung(203;0.0232)|Lung NSC(277;0.0739)		all cancers(265;0.0615)|Epithelial(280;0.139)		ATATTCGCAGGATTAGGAAAA	0.587													29	95					0	0	1	0	0
DPYD	1806	broad.mit.edu	37	1	98058819	98058819	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:98058819G>A	uc001drv.2	-	10	1220	c.1083C>T	c.(1081-1083)ATC>ATT	p.I361I		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	361					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TTCTGAAGACGATGAACACAC	0.458													25	111					0	0	1	0	0
DPYD	1806	broad.mit.edu	37	1	98348837	98348837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:98348837G>A	uc001drv.2	-	2	270	c.133C>T	c.(133-135)CCT>TCT	p.P45S	DPYD_uc010oub.1_Intron|DPYD_uc001drw.2_Missense_Mutation_p.P45S	NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	45					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TTCTTATCAGGATTTCTTTTC	0.373													17	21					0	0	1	0	0
SASS6	163786	broad.mit.edu	37	1	100588017	100588017	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:100588017A>T	uc001dsu.2	-	4	371	c.230T>A	c.(229-231)CTG>CAG	p.L77Q	SASS6_uc009wdz.2_5'UTR	NM_194292	NP_919268	Q6UVJ0	SAS6_HUMAN	spindle assembly abnormal protein 6	77	PISA.				centriole replication	centriole				upper_aerodigestive_tract(1)|ovary(1)	2		all_epithelial(167;4.58e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.085)|all cancers(265;0.139)|COAD - Colon adenocarcinoma(174;0.15)|Lung(183;0.197)		GAAGTCTACCAGAAGACCTTG	0.303													23	19					0	0	1	0	0
VAV3	10451	broad.mit.edu	37	1	108303444	108303444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:108303444G>A	uc001dvk.1	-	10	1033	c.979C>T	c.(979-981)CCT>TCT	p.P327S	VAV3_uc010ouw.1_Missense_Mutation_p.P327S|VAV3_uc001dvl.1_Missense_Mutation_p.P151S|VAV3_uc010oux.1_Missense_Mutation_p.P327S	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	327	DH.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		CGTTGCATAGGAACCACAAGC	0.294													38	25					0	0	1	0	0
WDR47	22911	broad.mit.edu	37	1	109544854	109544854	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:109544854G>A	uc001dwj.2	-	7	1801	c.1425C>T	c.(1423-1425)TTC>TTT	p.F475F	WDR47_uc001dwl.2_Silent_p.F483F|WDR47_uc001dwi.2_Silent_p.F476F|WDR47_uc001dwk.2_Silent_p.F447F|WDR47_uc010ovf.1_Silent_p.F402F	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	475										ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		ACCTATTAAGGAACTGTTCAG	0.378													50	160					0	0	1	0	0
AMIGO1	57463	broad.mit.edu	37	1	110050768	110050768	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:110050768G>A	uc001dxx.3	-	2	1149	c.767C>T	c.(766-768)TCC>TTC	p.S256F		NM_020703	NP_065754	Q86WK6	AMGO1_HUMAN	AMIGO protein precursor	256	LRRCT.|Extracellular (Potential).				axonal fasciculation|heterophilic cell-cell adhesion|homophilic cell adhesion|myelination|positive regulation of axonogenesis	axon|integral to membrane				ovary(1)|breast(1)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0182)|Epithelial(280;0.046)|all cancers(265;0.0492)|READ - Rectum adenocarcinoma(129;0.0689)|LUSC - Lung squamous cell carcinoma(189;0.227)		CAGCTTCTTGGAGTTCATGCA	0.527													32	89					0	0	1	0	0
SLC6A17	388662	broad.mit.edu	37	1	110740790	110740790	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:110740790C>T	uc009wfq.2	+	12	2369	c.1908C>T	c.(1906-1908)TTC>TTT	p.F636F		NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	636	Helical; Name=12; (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		CTGTGGTGTTCGTCCTGCGGC	0.607													24	13					0	0	1	0	0
MOV10	4343	broad.mit.edu	37	1	113232667	113232667	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:113232667C>T	uc001eck.2	+	5	1053	c.783C>T	c.(781-783)ATC>ATT	p.I261I	MOV10_uc001ecl.2_Silent_p.I261I|MOV10_uc001ecn.2_Silent_p.I261I|MOV10_uc001ecm.2_Silent_p.I201I|MOV10_uc009wgj.1_Silent_p.I201I	NM_001130079	NP_001123551	Q9HCE1	MOV10_HUMAN	Mov10, Moloney leukemia virus 10, homolog	261					mRNA cleavage involved in gene silencing by miRNA|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body	ATP binding|helicase activity|protein binding|RNA binding			ovary(4)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;3.31e-11)|all_epithelial(167;5.69e-10)|all_lung(203;3.73e-05)|Breast(1374;0.000525)|Lung NSC(69;0.000954)|Ovarian(761;0.0367)|Lung SC(238;0.114)		OV - Ovarian serous cystadenocarcinoma(397;3.99e-67)|all cancers(265;1e-62)|Epithelial(280;4.78e-61)|Lung(183;0.0234)|Colorectal(144;0.0686)|READ - Rectum adenocarcinoma(129;0.0929)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|BRCA - Breast invasive adenocarcinoma(282;0.24)		GGACCCGGATCACCGGAAACC	0.612													24	97					0	0	1	0	0
PTPN22	26191	broad.mit.edu	37	1	114391169	114391169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:114391169C>T	uc001eds.2	-	11	1038	c.908G>A	c.(907-909)GGA>GAA	p.G303E	PTPN22_uc009wgq.2_Intron|PTPN22_uc010owo.1_Missense_Mutation_p.G59E|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.G303E|PTPN22_uc009wgs.2_Missense_Mutation_p.G176E|PTPN22_uc001edu.2_Missense_Mutation_p.G303E	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	303					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACCTCTGTTCCAGAATGTTT	0.333													91	102					0	0	1	0	0
DENND2C	163259	broad.mit.edu	37	1	115130016	115130016	+	Missense_Mutation	SNP	C	T	T	rs139442561		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:115130016C>T	uc001efd.1	-	20	3449	c.2747G>A	c.(2746-2748)CGG>CAG	p.R916Q	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.R859Q	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	916										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACCAAGACTCCGCAAAATTCT	0.318													164	164					0	0	1	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			139	114					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118558676	118558676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:118558676C>T	uc001ehk.2	-	29	4267	c.4199G>A	c.(4198-4200)GGA>GAA	p.G1400E		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1400						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GATCCGATTTCCTTCAGGTGT	0.478													19	62					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118558773	118558773	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:118558773G>A	uc001ehk.2	-	29	4170	c.4102C>T	c.(4102-4104)CAT>TAT	p.H1368Y		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1368						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TCACCCTTATGGGCCATTGAT	0.393													46	38					0	0	1	0	0
TBX15	6913	broad.mit.edu	37	1	119427724	119427724	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:119427724G>A	uc001ehl.1	-	8	1437	c.1122C>T	c.(1120-1122)GTC>GTT	p.V374V	TBX15_uc009whj.1_Silent_p.V198V	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	480						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		CTGCCTGCATGACATACTGAA	0.567													24	20					0	0	1	0	0
TBX15	6913	broad.mit.edu	37	1	119428038	119428038	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:119428038G>A	uc001ehl.1	-	8	1123	c.808C>T	c.(808-810)CAT>TAT	p.H270Y	TBX15_uc009whj.1_Missense_Mutation_p.H94Y	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	376						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		GGGGCCAGATGAAAAGTTGGA	0.527													12	24					0	0	1	0	0
HMGCS2	3158	broad.mit.edu	37	1	120293530	120293530	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:120293530C>T	uc001eid.2	-	9	1473	c.1422G>A	c.(1420-1422)GTG>GTA	p.V474V	HMGCS2_uc010oxj.1_Silent_p.V432V|HMGCS2_uc001eie.2_Silent_p.V382V	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	474					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		GGGAGAAATTCACTGTGGAAT	0.498													8	27					0	0	1	0	0
ADAM30	11085	broad.mit.edu	37	1	120437504	120437504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:120437504C>T	uc001eij.2	-	1	1610	c.1456G>A	c.(1456-1458)GGA>AGA	p.G486R		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	486	Cys-rich.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		CAAGGGGTTCCATCCTGCTTA	0.488													17	33					0	0	1	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144882800	144882800	+	Silent	SNP	G	A	A	rs140450543		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:144882800G>A	uc001elw.3	-	24	3510	c.3219C>T	c.(3217-3219)ATC>ATT	p.I1073I	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Silent_p.I1139I|PDE4DIP_uc001elv.3_Silent_p.I80I	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1073					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TGTCTTCCTCGATCTCCCATC	0.512			T	PDGFRB	MPD								114	372					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145302714	145302714	+	Silent	SNP	A	G	G	rs9424867		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:145302714A>G	uc001end.3	+	8	1187	c.1152A>G	c.(1150-1152)TTA>TTG	p.L384L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_5'UTR|NBPF10_uc001emq.1_Silent_p.L113L	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		AGGAGAAGTTACGGGAAGGGA	0.527													4	64					0	0	1	0	0
PDZK1	5174	broad.mit.edu	37	1	145761346	145761346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:145761346G>A	uc001eon.1	+	8	1256	c.1159G>A	c.(1159-1161)GGC>AGC	p.G387S	NBPF10_uc001emp.3_Intron|PDZK1_uc001eoo.1_Missense_Mutation_p.G387S|PDZK1_uc010oza.1_Missense_Mutation_p.G276S	NM_002614	NP_002605	Q5T2W1	NHRF3_HUMAN	PDZ domain containing 1	387	PDZ 4.				carnitine transport|cell proliferation|drug transport|positive regulation of ion transmembrane transport	brush border membrane|cytoplasm	PDZ domain binding|transporter activity				0	all_hematologic(18;0.00473)|Acute lymphoblastic leukemia(18;0.0786)		KIRC - Kidney renal clear cell carcinoma(6;0.0764)|Kidney(552;0.118)|Colorectal(543;0.229)			AGGTGAAAATGGCTATGGCTT	0.473													22	72					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	148891699	148891699	+	RNA	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:148891699C>T	uc009wkv.1	+	9		c.1001C>T								Homo sapiens cDNA, FLJ17483.																		TCCAGACATCCAATCAGAACA	0.363													11	81					0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152128193	152128193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:152128193G>A	uc001ezs.1	-	3	1447	c.1382C>T	c.(1381-1383)TCC>TTC	p.S461F		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	461	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						ACCATAGTGGGAACTCTGGCC	0.517													448	398					0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152129383	152129383	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:152129383G>A	uc001ezs.1	-	3	257	c.192C>T	c.(190-192)GAC>GAT	p.D64D		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	64	2; high affinity (Potential).|S-100-like (By similarity).|EF-hand 2.					proteinaceous extracellular matrix	calcium ion binding				0						GTCCATCTCGGTCTTGATCTA	0.428													65	58					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152327317	152327317	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:152327317C>T	uc001ezw.3	-	3	3018	c.2945G>A	c.(2944-2946)GGA>GAA	p.G982E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	982	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGAGGATTTTCCTGAGCCTGA	0.498													227	211					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152328842	152328842	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:152328842C>T	uc001ezw.3	-	3	1493	c.1420G>A	c.(1420-1422)GGT>AGT	p.G474S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	474	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GATGTCTTACCTGAGCTAGAC	0.517													158	165					0	0	1	0	0
LCE1B	353132	broad.mit.edu	37	1	152784959	152784959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:152784959C>T	uc001faq.2	+	1	513	c.37C>T	c.(37-39)CCT>TCT	p.P13S		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	13	Pro-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTGCCAGCCccctcccaagtg	0.473													101	97					0	0	1	0	0
S100A7A	338324	broad.mit.edu	37	1	153391697	153391697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:153391697C>T	uc001fbt.1	+	3	275	c.218C>T	c.(217-219)TCT>TTT	p.S73F		NM_176823	NP_789793	Q86SG5	S1A7A_HUMAN	S100 calcium binding protein A7-like 1	73	2; high affinity (Potential).|EF-hand 2.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			ATTGATTTTTCTGAGTTTCTG	0.483													35	34					0	0	1	0	0
S100A6	6277	broad.mit.edu	37	1	153507178	153507178	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:153507178C>T	uc001fbw.1	-	3	581	c.267G>A	c.(265-267)AAG>AAA	p.K89K		NM_014624	NP_055439	P06703	S10A6_HUMAN	S100 calcium-binding protein A6	89					axonogenesis|positive regulation of fibroblast proliferation|signal transduction	cytosol|extrinsic to internal side of plasma membrane|nuclear envelope|perinuclear region of cytoplasm|ruffle	calcium ion binding|calcium-dependent protein binding|protein homodimerization activity|S100 beta binding|tropomyosin binding			ovary(1)	1	all_lung(78;1.66e-32)|Lung NSC(65;5.71e-31)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			ATTTTCAGCCCTTGAGGGCTT	0.468													44	35					0	0	1	0	0
S100A2	6273	broad.mit.edu	37	1	153534067	153534067	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:153534067C>T	uc001fcb.2	-	3	480	c.142G>A	c.(142-144)GAG>AAG	p.E48K		NM_005978	NP_005969	P29034	S10A2_HUMAN	S100 calcium binding protein A2	49					endothelial cell migration		calcium ion binding			ovary(1)	1	all_lung(78;5.98e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			TCCACTTTCTCCTGAAAGTGA	0.547													69	203					0	0	1	0	0
NPR1	4881	broad.mit.edu	37	1	153655871	153655871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:153655871G>A	uc001fcs.3	+	6	1704	c.1283G>A	c.(1282-1284)GGG>GAG	p.G428E	NPR1_uc010pdz.1_Missense_Mutation_p.G174E|NPR1_uc010pea.1_5'Flank	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	428	Extracellular (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	AACTACAATGGGACTTCCCAA	0.592													20	15					0	0	1	0	0
FLAD1	80308	broad.mit.edu	37	1	154961016	154961016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:154961016G>A	uc001fgf.1	+	2	1162	c.808G>A	c.(808-810)GGA>AGA	p.G270R	FLAD1_uc001fgc.2_Missense_Mutation_p.G171R|FLAD1_uc001fgd.1_Missense_Mutation_p.G270R|FLAD1_uc001fge.1_Missense_Mutation_p.G173R|FLAD1_uc001fgg.1_Missense_Mutation_p.G173R|FLAD1_uc001fgh.1_Missense_Mutation_p.G3R	NM_025207	NP_079483	Q8NFF5	FAD1_HUMAN	flavin adenine dinucleotide synthetase isoform	270					FAD biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	ATP binding|FMN adenylyltransferase activity			ovary(2)|skin(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GGGGATGAAGGGACTATTCCA	0.572													37	22					0	0	1	0	0
NTRK1	4914	broad.mit.edu	37	1	156849848	156849848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:156849848C>T	uc001fqh.1	+	16	2160	c.2104C>T	c.(2104-2106)CGT>TGT	p.R702C	NTRK1_uc001fqf.1_Missense_Mutation_p.R666C|NTRK1_uc009wsi.1_Missense_Mutation_p.R401C|NTRK1_uc001fqi.1_Missense_Mutation_p.R696C|NTRK1_uc009wsk.1_Missense_Mutation_p.R699C	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	702	Cytoplasmic (Potential).|Protein kinase.				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	CATCCTGTACCGTAAGTTCAC	0.637			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			31	94					0	0	1	0	0
KIRREL	55243	broad.mit.edu	37	1	158064610	158064610	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:158064610C>T	uc001frn.3	+	15	2378	c.1974C>T	c.(1972-1974)GCC>GCT	p.A658A	KIRREL_uc010pib.1_Silent_p.A558A|KIRREL_uc009wsq.2_Silent_p.A494A|KIRREL_uc001fro.3_Silent_p.A472A|uc001frp.2_5'Flank	NM_018240	NP_060710	Q96J84	KIRR1_HUMAN	kin of IRRE like precursor	658	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.0378)					GGGGCCCTGCCTCTGACTATG	0.652													31	32					0	0	1	0	0
OR10K2	391107	broad.mit.edu	37	1	158389761	158389761	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:158389761G>A	uc010pii.1	-	1	896	c.896C>T	c.(895-897)TCA>TTA	p.S299L		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	299	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					ACAAAGAGCTGATTTGAACTC	0.259													9	28					0	0	1	0	0
OR10K2	391107	broad.mit.edu	37	1	158390564	158390564	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:158390564G>A	uc010pii.1	-	1	93	c.93C>T	c.(91-93)TTC>TTT	p.F31F		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					AGAGGAGCAGGAAGATAACAA	0.527													39	20					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158653172	158653172	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:158653172C>T	uc001fst.1	-	3	578	c.379G>A	c.(379-381)GAA>AAA	p.E127K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	127	Spectrin 2.			Missing (in Ref. 3; AAA60575).	actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TTCGTTTCTTCGTGGGCAGAA	0.388													44	47					0	0	1	0	0
OR6K2	81448	broad.mit.edu	37	1	158670041	158670041	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:158670041G>A	uc001fsu.1	-	1	402	c.402C>T	c.(400-402)ATC>ATT	p.I134I		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					TGGGGGTCATGATAGAGGGAT	0.473													16	81					0	0	1	0	0
OR6K2	81448	broad.mit.edu	37	1	158670269	158670269	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:158670269G>A	uc001fsu.1	-	1	174	c.174C>T	c.(172-174)CCC>CCT	p.P58P		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					AAGTATACATGGGAGTGTGGA	0.438													24	70					0	0	1	0	0
OR6N1	128372	broad.mit.edu	37	1	158735788	158735788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:158735788G>A	uc010piq.1	-	1	685	c.685C>T	c.(685-687)CCC>TCC	p.P229S		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GCAGCTGAGGGAATTCTGAGC	0.498													35	110					0	0	1	0	0
OR10J1	26476	broad.mit.edu	37	1	159410126	159410126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:159410126C>T	uc010piv.1	+	1	578	c.578C>T	c.(577-579)CCT>CTT	p.P193L	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	193	Extracellular (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					GACATCCGCCCTGTGATGAAG	0.463													107	84					0	0	1	0	0
FCRL6	343413	broad.mit.edu	37	1	159778089	159778089	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:159778089C>T	uc001fud.3	+	3	216	c.174C>T	c.(172-174)TTC>TTT	p.F58F	FCRL6_uc010pix.1_Silent_p.F53F|FCRL6_uc001fuc.2_Silent_p.F65F|FCRL6_uc009wsz.1_Silent_p.F58F|FCRL6_uc009wta.2_Silent_p.F58F	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	58	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					ATGGAAAATTCCTTCATTTCT	0.502													29	13					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160111091	160111091	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:160111091G>A	uc001fvc.2	+	23	3174	c.3042G>A	c.(3040-3042)GTG>GTA	p.V1014V	ATP1A2_uc001fvd.2_Silent_p.V733V	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	1014	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			CAGGCTGGGTGGAGAAGGAGA	0.527													17	67					0	0	1	0	0
CASQ1	844	broad.mit.edu	37	1	160171068	160171068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:160171068G>A	uc010pja.1	+	11	1350	c.1093G>A	c.(1093-1095)GAG>AAG	p.E365K		NM_001231	NP_001222	P31415	CASQ1_HUMAN	calsequestrin 1	365	Asp-rich.					mitochondrial matrix|sarcoplasmic reticulum lumen|smooth endoplasmic reticulum	calcium ion binding			central_nervous_system(1)	1	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GGACGATGAGGAGGACCTGCC	0.552													9	17					0	0	1	0	0
ADCY10	55811	broad.mit.edu	37	1	167793962	167793962	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:167793962G>A	uc001ger.2	-	27	4180	c.3882C>T	c.(3880-3882)ATC>ATT	p.I1294I	ADCY10_uc009wvj.2_RNA|ADCY10_uc009wvk.2_Silent_p.I1202I|ADCY10_uc010plj.1_Silent_p.I1141I	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1294					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						CGTATGCCACGATTTCAATGC	0.522													167	146					0	0	1	0	0
GPR161	23432	broad.mit.edu	37	1	168065881	168065881	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:168065881G>A	uc001gfc.2	-	5	1278	c.964C>T	c.(964-966)CTG>TTG	p.L322L	GPR161_uc001gfb.2_Silent_p.L190L|GPR161_uc010pll.1_Silent_p.L232L|GPR161_uc010plm.1_Silent_p.L208L|GPR161_uc009wvo.2_Silent_p.L339L|GPR161_uc001gfd.2_Silent_p.L322L|GPR161_uc010pln.1_Silent_p.L342L|GPR161_uc001gfe.1_Silent_p.L322L	NM_153832	NP_722561	Q8N6U8	GP161_HUMAN	G protein-coupled receptor 161 isoform 2	322	Helical; Name=7; (Potential).				multicellular organismal development	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_hematologic(923;0.215)					CCATAGATCAGGGGGTGGCAG	0.572													30	74					0	0	1	0	0
SLC9A11	284525	broad.mit.edu	37	1	173545850	173545850	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:173545850C>T	uc001giz.2	-	8	1275	c.852G>A	c.(850-852)CTG>CTA	p.L284L	SLC9A11_uc009wwe.2_5'UTR|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	284					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						AATCTAAATTCAGTCCTACAG	0.368													31	31					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175054588	175054588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:175054588G>A	uc001gkl.1	+	6	1395	c.1282G>A	c.(1282-1284)GGA>AGA	p.G428R	TNN_uc010pmx.1_Missense_Mutation_p.G428R	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	428	Fibronectin type-III 2.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GCCCATGAGAGGAGAGCTGGA	0.542													21	13					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175087757	175087757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:175087757C>T	uc001gkl.1	+	11	2560	c.2447C>T	c.(2446-2448)TCC>TTC	p.S816F		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	816	Fibronectin type-III 7.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GCCACTGTCTCCTGGGACCCG	0.537													67	65					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525627	176525627	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:176525627C>T	uc001gkz.2	+	2	1333	c.169C>T	c.(169-171)CGA>TGA	p.R57*	PAPPA2_uc001gky.1_Nonsense_Mutation_p.R57*|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	57					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGCCAAGGTTCGAAGACCCAG	0.567													58	45					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176563743	176563743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:176563743G>A	uc001gkz.2	+	3	2167	c.1003G>A	c.(1003-1005)GAT>AAT	p.D335N	PAPPA2_uc001gky.1_Missense_Mutation_p.D335N|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	335					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGGAAAGCGGGATGCTCGCTT	0.562													15	43					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176709260	176709260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:176709260C>T	uc001gkz.2	+	14	5243	c.4079C>T	c.(4078-4080)TCC>TTC	p.S1360F	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1360					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CTAAGGACATCCTCCCGCATT	0.517													26	37					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176709307	176709307	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:176709307G>A	uc001gkz.2	+	14	5290	c.4126G>A	c.(4126-4128)GAG>AAG	p.E1376K	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1376					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CTCAGAGGACGAGGGGCAGAA	0.483													15	28					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176738800	176738800	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:176738800C>T	uc001gkz.2	+	16	5545	c.4381C>T	c.(4381-4383)CCC>TCC	p.P1461S	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1461	Sushi 1.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GAGCTGCCTTCCCGTGGACTG	0.473													57	56					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176845688	176845688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:176845688C>T	uc001glc.2	-	21	3660	c.3448G>A	c.(3448-3450)GAT>AAT	p.D1150N	ASTN1_uc001glb.1_Missense_Mutation_p.D1150N|ASTN1_uc001gld.1_Missense_Mutation_p.D1150N	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1158					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GCCTTGACATCATCCACCACG	0.577													20	69					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176927615	176927615	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:176927615G>A	uc001glc.2	-	10	1814	c.1602C>T	c.(1600-1602)TTC>TTT	p.F534F	ASTN1_uc001glb.1_Silent_p.F534F|ASTN1_uc001gld.1_Silent_p.F534F|ASTN1_uc009wwx.1_Silent_p.F534F	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	542					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GAGTGTAGGTGAATCTGCAGG	0.552													12	7					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177250589	177250589	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:177250589C>T	uc001glf.2	+	8	2589	c.2277C>T	c.(2275-2277)ATC>ATT	p.I759I	FAM5B_uc001glg.2_Silent_p.I654I	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	759						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TGGGCAGGATCCAGTCCTCCC	0.557													52	41					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179638516	179638516	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:179638516C>T	uc001gnf.1	+	16	2925	c.2675C>T	c.(2674-2676)TCC>TTC	p.S892F	TDRD5_uc010pnp.1_Missense_Mutation_p.S946F|TDRD5_uc001gnh.1_Missense_Mutation_p.S447F	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	892					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						GTGGATGATTCCGCAGAAAAG	0.473													37	110					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181701924	181701924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:181701924G>A	uc001gow.2	+	20	2867	c.2702G>A	c.(2701-2703)GGA>GAA	p.G901E	CACNA1E_uc009wxs.2_Missense_Mutation_p.G789E|CACNA1E_uc001gox.1_Missense_Mutation_p.G127E|CACNA1E_uc009wxt.2_Missense_Mutation_p.G127E	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	901	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GAGGCAGGGGGAGGAGAGGCT	0.662													23	44					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181759595	181759595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:181759595G>A	uc001gow.2	+	44	5966	c.5801G>A	c.(5800-5802)GGA>GAA	p.G1934E	CACNA1E_uc009wxs.2_Missense_Mutation_p.G1822E|CACNA1E_uc009wxt.2_Missense_Mutation_p.G1160E	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1934	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GGCCGGAGTGGATACCCTTCG	0.542													21	53					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	186092168	186092168	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:186092168C>T	uc001grq.1	+	81	12544	c.12315C>T	c.(12313-12315)CTC>CTT	p.L4105L		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4105	Ig-like C2-type 40.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CAGATGGCCTCCCTCCGCCTG	0.473													43	41					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190067802	190067802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:190067802C>T	uc001gse.1	-	8	1879	c.1647G>A	c.(1645-1647)ATG>ATA	p.M549I	FAM5C_uc010pot.1_Missense_Mutation_p.M447I	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	549						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GACCCAAAATCATATGGACCA	0.473													20	66					0	0	1	0	0
UCHL5	51377	broad.mit.edu	37	1	192998407	192998407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:192998407G>A	uc001gsm.2	-	6	598	c.467C>T	c.(466-468)TCA>TTA	p.S156L	UCHL5_uc001gsn.2_RNA|UCHL5_uc001gso.2_Missense_Mutation_p.S156L|UCHL5_uc010pov.1_Intron|UCHL5_uc001gsp.2_Missense_Mutation_p.S156L|UCHL5_uc001gsq.2_Missense_Mutation_p.S156L|UCHL5_uc010pow.1_Missense_Mutation_p.S32L|UCHL5_uc010pox.1_Missense_Mutation_p.S32L	NM_015984	NP_057068	Q9Y5K5	UCHL5_HUMAN	ubiquitin carboxyl-terminal hydrolase L5	156					DNA recombination|DNA repair|protein deubiquitination|regulation of proteasomal protein catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytosol|Ino80 complex|proteasome complex	endopeptidase inhibitor activity|omega peptidase activity|proteasome binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|ovary(1)	3						TTCTTTTGCTGATGTCTTCGT	0.308													9	26					0	0	1	0	0
KCNT2	343450	broad.mit.edu	37	1	196397261	196397261	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:196397261C>T	uc001gtd.1	-	10	1018	c.958G>A	c.(958-960)GAA>AAA	p.E320K	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.E320K|KCNT2_uc001gtf.1_Missense_Mutation_p.E320K|KCNT2_uc001gtg.1_Intron|KCNT2_uc009wyu.2_Missense_Mutation_p.E320K|KCNT2_uc009wyv.1_Missense_Mutation_p.E295K	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	320	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						GCATAGAATTCATTTAAAAAA	0.373													16	40					0	0	1	0	0
CFHR5	81494	broad.mit.edu	37	1	196963358	196963358	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:196963358G>A	uc001gts.3	+	4	707	c.579G>A	c.(577-579)GGG>GGA	p.G193G		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	193	Sushi 3.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						ACCAATTTGGGTGGTCACCTA	0.318													35	102					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197404448	197404448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:197404448G>A	uc001gtz.2	+	9	3590	c.3455G>A	c.(3454-3456)GGA>GAA	p.G1152E	CRB1_uc010poz.1_Missense_Mutation_p.G1128E|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.G1040E|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.G633E|CRB1_uc001gub.1_Missense_Mutation_p.G801E	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1152	Extracellular (Potential).|EGF-like 15.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TTGCATGGAGGAAACTGTGAA	0.443													11	37					0	0	1	0	0
PTPRC	5788	broad.mit.edu	37	1	198665840	198665840	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:198665840G>A	uc001gur.1	+	4	275	c.95_splice	c.e4-1	p.G32_splice	PTPRC_uc001gus.1_Splice_Site_p.G32_splice|PTPRC_uc001gut.1_Intron|PTPRC_uc009wze.1_Intron|PTPRC_uc009wzf.1_Intron|PTPRC_uc010ppg.1_Intron|PTPRC_uc001guu.1_Splice_Site_p.R75_splice|PTPRC_uc001guv.1_Intron|PTPRC_uc001guw.1_Intron	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C						axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						TTAATTAACAGGATTGACTAC	0.418													18	92					0	0	1	0	0
NR5A2	2494	broad.mit.edu	37	1	200014571	200014571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:200014571G>A	uc001gvb.2	+	4	528	c.322G>A	c.(322-324)GGA>AGA	p.G108R	NR5A2_uc001gvc.2_Missense_Mutation_p.G62R|NR5A2_uc009wzh.2_Missense_Mutation_p.G68R|NR5A2_uc010pph.1_Missense_Mutation_p.G36R	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	108	Nuclear receptor.				embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					TGTCTTATAGGGATTTTTTAA	0.343													9	41					0	0	1	0	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200827081	200827081	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:200827081C>T	uc001gvl.2	+	18	4634	c.4364C>T	c.(4363-4365)CCC>CTC	p.P1455L	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.P1444L|CAMSAP1L1_uc001gvm.2_Missense_Mutation_p.P1428L	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	1455	CKK.					cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						AGCCACATACCCGCTAAAACT	0.363													83	82					0	0	1	0	0
C1orf106	55765	broad.mit.edu	37	1	200877898	200877898	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:200877898C>T	uc001gvo.2	+	7	900	c.870C>T	c.(868-870)GCC>GCT	p.A290A	C1orf106_uc010ppm.1_Silent_p.A205A	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	290	Pro-rich.									skin(2)|ovary(1)	3						AGTCTCCAGCCCCACCTTCTC	0.607													90	100					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201009482	201009482	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:201009482G>A	uc001gvv.2	-	43	5474	c.5247C>T	c.(5245-5247)TCC>TCT	p.S1749S		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1749	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CCTCAGGCATGGAGGACTCCA	0.562													6	23					0	0	1	0	0
ZC3H11A	9877	broad.mit.edu	37	1	203820193	203820193	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:203820193C>T	uc001hac.2	+	19	2731	c.2115C>T	c.(2113-2115)GTC>GTT	p.V705V	ZC3H11A_uc001had.2_Silent_p.V705V|ZC3H11A_uc001hae.2_Silent_p.V705V|ZC3H11A_uc001haf.2_Silent_p.V705V|ZC3H11A_uc010pqm.1_Silent_p.V651V	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	705							nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			AGGCTGTTGTCCCGCTTGTCT	0.413													140	115					0	0	1	0	0
KLHDC8A	55220	broad.mit.edu	37	1	205307724	205307724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:205307724C>T	uc001hcf.1	-	5	1326	c.758G>A	c.(757-759)GGG>GAG	p.G253E	KLHDC8A_uc010prg.1_Missense_Mutation_p.G140E|KLHDC8A_uc001hcg.1_Missense_Mutation_p.G253E	NM_018203	NP_060673	Q8IYD2	KLD8A_HUMAN	kelch domain containing 8A	253	Kelch 6.									ovary(1)	1	Breast(84;0.23)		BRCA - Breast invasive adenocarcinoma(75;0.117)			CAGCCATCCCCCTATAGGCCA	0.517													38	53					0	0	1	0	0
ESRRG	2104	broad.mit.edu	37	1	216680314	216680314	+	Silent	SNP	T	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:216680314T>C	uc001hkw.1	-	7	1510	c.1344A>G	c.(1342-1344)AAA>AAG	p.K448K	ESRRG_uc001hky.1_Silent_p.K425K|ESRRG_uc009xdp.1_Silent_p.K425K|ESRRG_uc001hkz.1_Silent_p.K386K|ESRRG_uc010puc.1_Silent_p.K425K|ESRRG_uc001hla.1_Silent_p.K425K|ESRRG_uc001hlb.1_Silent_p.K425K|ESRRG_uc010pud.1_Silent_p.K256K|ESRRG_uc001hlc.1_Silent_p.K425K|ESRRG_uc001hld.1_Silent_p.K425K|ESRRG_uc001hkx.1_Silent_p.K460K|ESRRG_uc009xdo.1_Silent_p.K425K	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	448					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	CCAAAAAAAGTTTGTGCATTG	0.468													12	44					0	0	1	0	0
HHIPL2	79802	broad.mit.edu	37	1	222717364	222717364	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:222717364C>T	uc001hnh.1	-	2	547	c.489G>A	c.(487-489)AGG>AGA	p.R163R		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	163					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		GGGTACCGTCCCTTCCATGAG	0.567													28	93					0	0	1	0	0
TLR5	7100	broad.mit.edu	37	1	223284741	223284741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:223284741C>T	uc001hnv.1	-	4	2079	c.1633G>A	c.(1633-1635)GAT>AAT	p.D545N	TLR5_uc001hnw.1_Missense_Mutation_p.D545N	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	545	LRR 14.|Extracellular (Potential).		Missing (in 10% of the population; abolishes flagellin signaling; associated with resistance to SLEB1).		cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		GCAGGTAAATCATTGTGAGAA	0.413													52	61					0	0	1	0	0
TLR5	7100	broad.mit.edu	37	1	223285838	223285838	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:223285838G>A	uc001hnv.1	-	4	982	c.536C>T	c.(535-537)TCC>TTC	p.S179F	TLR5_uc001hnw.1_Missense_Mutation_p.S179F	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	179	LRR 4.|Extracellular (Potential).				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		TATTTGGTTGGAGGAAAAATC	0.413													24	57					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228538619	228538619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:228538619G>A	uc009xez.1	+	77	18438	c.18394G>A	c.(18394-18396)GAA>AAA	p.E6132K	OBSCN_uc001hsn.2_Missense_Mutation_p.E6132K|OBSCN_uc001hsr.1_Missense_Mutation_p.E761K|OBSCN_uc009xfa.2_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	6132	Ig-like 53.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CTGCACCATCGAAGGCGCCCC	0.667													32	28					0	0	1	0	0
C1orf198	84886	broad.mit.edu	37	1	230979413	230979413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:230979413G>A	uc001hub.2	-	3	658	c.614C>T	c.(613-615)GCC>GTC	p.A205V	C1orf198_uc009xfh.1_Missense_Mutation_p.A75V|C1orf198_uc001huc.1_5'UTR|C1orf198_uc001hud.1_Missense_Mutation_p.A167V	NM_032800	NP_116189	Q9H425	CA198_HUMAN	hypothetical protein LOC84886 isoform 1	205											0	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.178)				CTGGAACTCGGCCTCAGGCCC	0.637													33	94					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237982366	237982366	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:237982366C>T	uc001hyl.1	+	101	14584	c.14464C>T	c.(14464-14466)CGT>TGT	p.R4822C	RYR2_uc010pyb.1_Missense_Mutation_p.R255C	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4822	Helical; Name=M9; (Potential).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TGTTGGAGTTCGTGCTGGAGG	0.413													15	58					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240492663	240492663	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:240492663C>T	uc010pyd.1	+	10	4557	c.4332C>T	c.(4330-4332)ATC>ATT	p.I1444I	FMN2_uc010pye.1_Silent_p.I1448I|FMN2_uc010pyf.1_Silent_p.I90I|FMN2_uc010pyg.1_Silent_p.I40I	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1444	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TGTCACTAATCCCCAACTTTT	0.358													28	89					0	0	1	0	0
CNST	163882	broad.mit.edu	37	1	246797840	246797840	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:246797840A>G	uc001ibp.2	+	6	1147	c.769A>G	c.(769-771)AAT>GAT	p.N257D	CNST_uc001ibo.3_Missense_Mutation_p.N257D	NM_152609	NP_689822	Q6PJW8	CNST_HUMAN	hypothetical protein LOC163882 isoform 1	257					positive regulation of Golgi to plasma membrane protein transport	integral to membrane|plasma membrane|protein complex|trans-Golgi network|transport vesicle	connexin binding				0						AAAGGGATTTAATGGTGAAGA	0.333													65	74					0	0	1	0	0
OR2C3	81472	broad.mit.edu	37	1	247695267	247695267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:247695267G>A	uc009xgy.2	-	2	909	c.547C>T	c.(547-549)CCC>TCC	p.P183S	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			ATAATGAGGGGCATCTCGCAA	0.557													8	33					0	0	1	0	0
OR13G1	441933	broad.mit.edu	37	1	247835968	247835968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:247835968G>A	uc001idi.1	-	1	376	c.376C>T	c.(376-378)CCT>TCT	p.P126S		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	126	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TAATGAAGAGGGAAACAAATG	0.493													9	34					0	0	1	0	0
OR6F1	343169	broad.mit.edu	37	1	247875734	247875734	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:247875734G>A	uc001idj.1	-	1	324	c.324C>T	c.(322-324)GGC>GGT	p.G108G		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			ACTCTGTGCAGCCTAATGAGA	0.498													25	70					0	0	1	0	0
TRIM58	25893	broad.mit.edu	37	1	248039768	248039768	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:248039768G>A	uc001ido.2	+	6	1486	c.1438G>A	c.(1438-1440)GAT>AAT	p.D480N	OR2W3_uc001idp.1_Intron	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	480						intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TCCTGCTTCTGATGTAAGAGA	0.428													34	27					0	0	1	0	0
OR2AK2	391191	broad.mit.edu	37	1	248129406	248129406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:248129406C>T	uc010pzd.1	+	1	773	c.773C>T	c.(772-774)TCC>TTC	p.S258F	OR2L13_uc001ids.2_Intron	NM_001004491	NP_001004491	Q8NG84	O2AK2_HUMAN	olfactory receptor, family 2, subfamily AK,	258	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			ACTTGTTCCTCCCACCTGATT	0.507													48	20					0	0	1	0	0
OR2M2	391194	broad.mit.edu	37	1	248344045	248344045	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:248344045G>A	uc010pzf.1	+	1	758	c.758G>A	c.(757-759)GGA>GAA	p.G253E		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ATGTACTATGGAGCAGCTTTG	0.498													52	144					0	0	1	0	0
OR2T5	401993	broad.mit.edu	37	1	248651948	248651948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:248651948G>A	uc001iem.1	+	1	59	c.59G>A	c.(58-60)GGA>GAA	p.G20E		NM_001004697	NP_001004697	Q6IEZ7	OR2T5_HUMAN	olfactory receptor, family 2, subfamily T,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ATCCTCATGGGACTCTTCAGA	0.483													15	88					0	0	1	0	0
GTPBP4	23560	broad.mit.edu	37	10	1041920	1041920	+	Missense_Mutation	SNP	C	T	T	rs141121079		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:1041920C>T	uc001ift.2	+	3	342	c.271C>T	c.(271-273)CAT>TAT	p.H91Y	GTPBP4_uc010qac.1_Intron|GTPBP4_uc001ifu.2_RNA|GTPBP4_uc010qad.1_Intron|GTPBP4_uc010qae.1_Missense_Mutation_p.H44Y	NM_012341	NP_036473	Q9BZE4	NOG1_HUMAN	G protein-binding protein CRFG	91					negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of collagen binding|negative regulation of DNA replication|negative regulation of protein ubiquitination|protein stabilization|regulation of cyclin-dependent protein kinase activity|ribosome biogenesis	nucleolus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding	p.H91Y(1)		ovary(1)|skin(1)	2		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.0814)	Epithelial(11;0.0513)|all cancers(11;0.135)|OV - Ovarian serous cystadenocarcinoma(14;0.173)		CGACAAGGATCATTACAAGTT	0.373													25	29					0	0	1	0	0
UCN3	114131	broad.mit.edu	37	10	5415840	5415840	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:5415840C>T	uc001ihx.1	+	2	381	c.157C>T	c.(157-159)CTG>TTG	p.L53L		NM_053049	NP_444277	Q969E3	UCN3_HUMAN	urocortin 3 preproprotein	53						extracellular region	hormone activity				0						GGATGCATCCCTGCTGAGCAA	0.592													5	17					0	0	1	0	0
TUBAL3	79861	broad.mit.edu	37	10	5435516	5435516	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:5435516C>T	uc001ihy.2	-	4	1345	c.1305G>A	c.(1303-1305)CTG>CTA	p.L435L	TUBAL3_uc001ihz.2_Silent_p.L395L	NM_024803	NP_079079	A6NHL2	TBAL3_HUMAN	tubulin, alpha-like 3	435					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1						AGTCCCTCTCCAGGGCTGCCA	0.478													19	41					0	0	1	0	0
CUBN	8029	broad.mit.edu	37	10	16979627	16979627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:16979627C>T	uc001ioo.2	-	39	5942	c.5890G>A	c.(5890-5892)GAT>AAT	p.D1964N		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1964					cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TCAGGTGCATCCACTGCAAAC	0.418													12	31					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21309078	21309078	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:21309078G>A	uc001iqk.2	-	3	571	c.217C>T	c.(217-219)CGC>TGC	p.R73C		NM_213569	NP_998734	O76041	NEBL_HUMAN	nebulette non-muscle isoform	737	Nebulin 21.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TGCTTCAGGCGAAGATTTTCA	0.413													24	46					0	0	1	0	0
C10orf113	387638	broad.mit.edu	37	10	21415039	21415039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:21415039C>T	uc001iqm.2	-	2	171	c.151G>A	c.(151-153)GAA>AAA	p.E51K	NEBL_uc001iqk.2_Intron	NM_001010896	NP_001010896	Q5VZT2	CJ113_HUMAN	hypothetical protein LOC387638	61										ovary(3)|pancreas(1)	4						GCTCTCCGTTCTGCCTTACCA	0.537													25	58					0	0	1	0	0
DNAJC1	64215	broad.mit.edu	37	10	22048520	22048520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:22048520G>A	uc001irc.2	-	11	1462	c.1175C>T	c.(1174-1176)TCG>TTG	p.S392L	DNAJC1_uc001ird.2_Missense_Mutation_p.S278L	NM_022365	NP_071760	Q96KC8	DNJC1_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 1	392	Cytoplasmic (By similarity).				negative regulation of proteolysis|regulation of protein secretion|regulation of transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane	ATPase activator activity|DNA binding|heat shock protein binding|unfolded protein binding			lung(1)	1		Breast(68;0.00869)|Prostate(175;0.0181)|Lung SC(717;0.0262)				CTGAACTGTCGATTTGAGTTC	0.562													25	42					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24813316	24813316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:24813316G>A	uc001iru.3	+	13	2924	c.2521G>A	c.(2521-2523)GAA>AAA	p.E841K	KIAA1217_uc001irs.2_Missense_Mutation_p.E761K|KIAA1217_uc001irt.3_Missense_Mutation_p.E806K|KIAA1217_uc010qcy.1_Missense_Mutation_p.E806K|KIAA1217_uc010qcz.1_Missense_Mutation_p.E806K|KIAA1217_uc001irv.1_Missense_Mutation_p.E656K|KIAA1217_uc010qda.1_Intron|KIAA1217_uc001irw.2_Missense_Mutation_p.E524K|KIAA1217_uc001irz.2_Missense_Mutation_p.E524K|KIAA1217_uc001irx.2_Missense_Mutation_p.E524K|KIAA1217_uc001iry.2_Missense_Mutation_p.E524K	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	841					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CATGGCTATGGAAAAGGCCAC	0.597													21	40					0	0	1	0	0
GPR158	57512	broad.mit.edu	37	10	25886748	25886748	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:25886748G>A	uc001isj.2	+	11	2253	c.2193G>A	c.(2191-2193)AAG>AAA	p.K731K	GPR158_uc001isk.2_Silent_p.K106K	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	731	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						ATAAAAGAAAGAAGATGATCA	0.438													38	63					0	0	1	0	0
MKX	283078	broad.mit.edu	37	10	28030318	28030318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:28030318C>T	uc001ity.3	-	3	529	c.304G>A	c.(304-306)GAG>AAG	p.E102K	MKX_uc001itx.3_Missense_Mutation_p.E102K	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	102	Homeobox; TALE-type.				muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AGTATCTTCTCGGTCTTGGTG	0.602													38	73					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30315630	30315630	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:30315630C>T	uc001iux.2	-	2	3506	c.3447G>A	c.(3445-3447)AGG>AGA	p.R1149R	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Silent_p.R1011R|KIAA1462_uc009xle.1_Silent_p.R1149R	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1149										ovary(4)	4						AGCCGCACTTCCTCCTGCCAT	0.607													31	51					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30316768	30316768	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:30316768G>A	uc001iux.2	-	2	2368	c.2309C>T	c.(2308-2310)TCC>TTC	p.S770F	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.S632F|KIAA1462_uc009xle.1_Missense_Mutation_p.S770F	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	770										ovary(4)	4						CTGGTCCACGGACAAGGAAGT	0.612													16	27					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37425564	37425564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:37425564G>A	uc001iza.1	+	6	716	c.617G>A	c.(616-618)CGA>CAA	p.R206Q		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	262	ANK 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GAATATATACGAAAATTATCT	0.269													5	12					0	0	1	0	0
RET	5979	broad.mit.edu	37	10	43614995	43614995	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:43614995C>T	uc001jal.2	+	14	2599	c.2409C>T	c.(2407-2409)ATC>ATT	p.I803I	RET_uc001jak.1_Silent_p.I803I|RET_uc010qez.1_Silent_p.I549I	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	803	Protein kinase.|Cytoplasmic (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	TCCTCCTCATCGTGGAGTACG	0.706		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				6	5					0	0	1	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999070	46999070	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:46999070G>A	uc001jec.2	+	3	325	c.190G>A	c.(190-192)GAA>AAA	p.E64K	GPRIN2_uc010qfq.1_5'Flank	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	64											0						GGCCCCGGAGGAAGAGGGGAA	0.692													10	54					0	0	1	0	0
GDF10	2662	broad.mit.edu	37	10	48438697	48438697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:48438697G>A	uc001jfb.2	-	1	470	c.14C>T	c.(13-15)CCC>CTC	p.P5L	GDF10_uc009xnp.2_Missense_Mutation_p.P5L|GDF10_uc009xnq.1_Missense_Mutation_p.P5L	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	5					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						GGTCCGAGCGGGGACATGAGC	0.602													5	22					0	0	1	0	0
ERCC6	2074	broad.mit.edu	37	10	50667245	50667245	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:50667245G>A	uc001jhs.3	-	21	4252	c.4098C>T	c.(4096-4098)GTC>GTT	p.V1366V	ERCC6_uc009xod.2_Silent_p.V526V|ERCC6_uc010qgr.1_Silent_p.V736V|ERCC6_uc001jhr.3_Silent_p.V734V	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	1366					base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						AATGCTCAGGGACATTATCTT	0.438								Direct_reversal_of_damage|NER					34	72					0	0	1	0	0
ERCC6	2074	broad.mit.edu	37	10	50690906	50690906	+	Missense_Mutation	SNP	G	A	A	rs61760163	byFrequency	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:50690906G>A	uc001jhs.3	-	10	2150	c.1996C>T	c.(1996-1998)CGC>TGC	p.R666C	ERCC6_uc010qgr.1_Missense_Mutation_p.R36C|ERCC6_uc001jhr.3_Missense_Mutation_p.R66C	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	666	Helicase ATP-binding.				base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						TGAGGGGTGCGAAACTATTTG	0.433								Direct_reversal_of_damage|NER					17	32					0	0	1	0	0
PGBD3	267004	broad.mit.edu	37	10	50724501	50724501	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:50724501G>A	uc001jht.2	-	2	915	c.660C>T	c.(658-660)GAC>GAT	p.D220D	ERCC6_uc001jhs.3_Intron|PGBD3_uc009xoe.2_Silent_p.D688D|PGBD3_uc001jhu.2_Silent_p.D688D	NM_170753	NP_736609	Q8N328	PGBD3_HUMAN	hypothetical protein LOC267004	220										pancreas(1)|breast(1)|skin(1)	3						TTTCAAACCGGTCACGTCTCA	0.388													34	47					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55570348	55570348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:55570348C>T	uc010qhs.1	-	36	4881	c.4486G>A	c.(4486-4488)GGT>AGT	p.G1496S	PCDH15_uc010qhq.1_Missense_Mutation_p.G1489S|PCDH15_uc010qhr.1_Missense_Mutation_p.G1484S|PCDH15_uc010qht.1_Missense_Mutation_p.G1489S|PCDH15_uc010qhu.1_Silent_p.L1507L	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TCAGCTTCACCAACCACCTCA	0.373										HNSCC(58;0.16)			36	84					0	0	1	0	0
LRRTM3	347731	broad.mit.edu	37	10	68857370	68857370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:68857370C>T	uc001jmz.1	+	3	2112	c.1562C>T	c.(1561-1563)ACC>ATC	p.T521I	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	521	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						AATGTGTCAACCTTTCTGGCA	0.398													17	29					0	0	1	0	0
PBLD	64081	broad.mit.edu	37	10	70043999	70043999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:70043999G>A	uc001jns.1	-	10	1005	c.802C>T	c.(802-804)CCA>TCA	p.P268S	PBLD_uc001jnr.1_Missense_Mutation_p.P235S|PBLD_uc001jnt.1_Missense_Mutation_p.P268S	NM_022129	NP_071412	P30039	PBLD_HUMAN	MAWD binding protein isoform a	268					biosynthetic process		isomerase activity			skin(2)|ovary(1)	3						CTTCCGTCTGGACGAAGGGAA	0.458													41	67					0	0	1	0	0
TACR2	6865	broad.mit.edu	37	10	71175867	71175867	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:71175867G>A	uc001jpn.2	-	1	808	c.213C>T	c.(211-213)TTC>TTT	p.F71F		NM_001057	NP_001048	P21452	NK2R_HUMAN	tachykinin receptor 2	71	Helical; Name=2; (Potential).				excretion|muscle contraction	integral to plasma membrane	tachykinin receptor activity			prostate(1)	1					Clonidine(DB00575)|Octreotide(DB00104)	GATTGACGATGAAGTAGTTGG	0.577													15	30					0	0	1	0	0
AIFM2	84883	broad.mit.edu	37	10	71880961	71880961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:71880961G>A	uc010qjg.1	-	3	314	c.301C>T	c.(301-303)CCC>TCC	p.P101S	AIFM2_uc001jqp.1_Missense_Mutation_p.P101S	NM_032797	NP_116186	Q9BRQ8	AIFM2_HUMAN	apoptosis-inducing factor (AIF)-like	101					apoptotic mitochondrial changes|chromosome condensation|induction of apoptosis	cytosol|integral to membrane|mitochondrial outer membrane	DNA binding|electron-transferring-flavoprotein dehydrogenase activity|flavin adenine dinucleotide binding			central_nervous_system(1)	1						TGAGAGAAGGGCAGGGCCTGA	0.448													8	19					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73450341	73450341	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:73450341G>A	uc001jrx.3	+	19	2553	c.2176G>A	c.(2176-2178)GGG>AGG	p.G726R	CDH23_uc001jry.2_Missense_Mutation_p.G342R|CDH23_uc001jrz.2_Missense_Mutation_p.G342R	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	726	Cadherin 7.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						TGCCCGCTCAGGTGAGCCCCC	0.642													3	5					0	0	1	0	0
TTC18	118491	broad.mit.edu	37	10	75051662	75051662	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:75051662G>A	uc009xrc.2	-	18	2212	c.2091C>T	c.(2089-2091)TCC>TCT	p.S697S	TTC18_uc001jty.2_Silent_p.S697S|TTC18_uc001jtv.3_5'Flank|TTC18_uc001jtw.3_5'Flank|TTC18_uc001jtx.2_Silent_p.S78S	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	697	TPR 2.						binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					TCTGGTTGAGGGAAAGGGCTT	0.458													45	90					0	0	1	0	0
SYNPO2L	79933	broad.mit.edu	37	10	75407027	75407027	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:75407027G>A	uc001jut.3	-	4	2535	c.2383C>T	c.(2383-2385)CTG>TTG	p.L795L	SYNPO2L_uc001jus.3_Silent_p.L571L	NM_001114133	NP_001107605	Q9H987	SYP2L_HUMAN	synaptopodin 2-like isoform a	795	Pro-rich.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1	Prostate(51;0.0112)					GAAGGGGGCAGAGACGGGGTA	0.592													44	105					0	0	1	0	0
SLC16A12	387700	broad.mit.edu	37	10	91198523	91198523	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:91198523G>A	uc001kgm.2	-	6	1167	c.776C>T	c.(775-777)TCC>TTC	p.S259F	SLC16A12_uc001kgl.2_5'Flank	NM_213606	NP_998771	Q6ZSM3	MOT12_HUMAN	solute carrier family 16 (monocarboxylic acid	259	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			skin(1)	1						AAACAGAACGGAGACGGCTAA	0.448													18	25					0	0	1	0	0
GPR120	338557	broad.mit.edu	37	10	95346994	95346994	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:95346994G>A	uc010qnt.1	+	4	818	c.762G>A	c.(760-762)AGG>AGA	p.R254R	GPR120_uc010qnu.1_Silent_p.R238R	NM_181745	NP_859529	Q5NUL3	O3FA1_HUMAN	G protein-coupled receptor 120	254	Cytoplasmic (Potential).				negative regulation of cytokine secretion|negative regulation of inflammatory response|regulation of glucose transport	integral to membrane|plasma membrane	fatty acid binding				0		Colorectal(252;0.122)				AGGCATCAAGGAAGAGGCTCA	0.562													19	24					0	0	1	0	0
PDE6C	5146	broad.mit.edu	37	10	95372583	95372583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:95372583G>A	uc001kiu.3	+	1	239	c.101G>A	c.(100-102)GGA>GAA	p.G34E		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	34					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				GAGGTGCTGGGAGAAATCTTC	0.552													43	76					0	0	1	0	0
CYP2C18	1562	broad.mit.edu	37	10	96443702	96443702	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:96443702C>T	uc001kjv.3	+	1	452	c.126C>T	c.(124-126)ATC>ATT	p.I42I	CYP2C18_uc001kjw.3_Silent_p.I42I	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	42					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		TTGGAAATATCCTGCAGTTAG	0.448													9	17					0	0	1	0	0
CYP2C18	1562	broad.mit.edu	37	10	96466555	96466555	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:96466555C>T	uc001kjv.3	+	5	983	c.657C>T	c.(655-657)TTC>TTT	p.F219F	CYP2C18_uc001kjw.3_Intron|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	219					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		GCAATAATTTCCCTGCTCTCA	0.299													9	12					0	0	1	0	0
CYP2C19	1557	broad.mit.edu	37	10	96522588	96522588	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:96522588C>T	uc010qnz.1	+	1	126	c.126C>T	c.(124-126)ATC>ATT	p.I42I	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Intron	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	42					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TTGGAAATATCCTACAGATAG	0.418													27	50					0	0	1	0	0
CYP2C19	1557	broad.mit.edu	37	10	96535210	96535211	+	Missense_Mutation	DNP	GG	AA	AA	rs72552267	byFrequency	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:96535210_96535211GG>AA	uc010qnz.1	+	3	395_396	c.395_396GG>AA	c.(394-396)CGG>CAA	p.R132Q	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Missense_Mutation_p.R110Q	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	132			R -> Q (in allele CYP2C19*6; loss of activity).		exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	ATGACGCTGCGGAATTTTGGGA	0.51													35	49					0	0	1	0	0
OPALIN	93377	broad.mit.edu	37	10	98111145	98111145	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:98111145C>T	uc001kmj.2	-	3	501	c.62G>A	c.(61-63)GGG>GAG	p.G21E	OPALIN_uc010qor.1_Missense_Mutation_p.G11E|OPALIN_uc001kmi.2_Missense_Mutation_p.G11E|OPALIN_uc001kmk.2_Intron|OPALIN_uc010qos.1_Intron	NM_033207	NP_149984	Q96PE5	OPALI_HUMAN	transmembrane protein 10 isoform a	21						Golgi apparatus|integral to membrane|plasma membrane					0						CGTTTCTTTCCCACCTGTGAC	0.323													20	45					0	0	1	0	0
ABCC2	1244	broad.mit.edu	37	10	101590581	101590581	+	Silent	SNP	T	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:101590581T>A	uc001kqf.2	+	21	2995	c.2856T>A	c.(2854-2856)ATT>ATA	p.I952I		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	952	Cytoplasmic (By similarity).					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	AAAAACTAATTAAGAAGGAAT	0.388													22	34					0	0	1	0	0
DNMBP	23268	broad.mit.edu	37	10	101716582	101716582	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:101716582G>A	uc001kqj.2	-	4	741	c.649C>T	c.(649-651)CAA>TAA	p.Q217*	NCRNA00093_uc001kqk.1_RNA	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	217					intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		CAGTCATCTTGATTTCCAGAA	0.512													41	61					0	0	1	0	0
C10orf2	56652	broad.mit.edu	37	10	102748634	102748634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:102748634G>A	uc001ksf.2	+	1	1342	c.667G>A	c.(667-669)GAG>AAG	p.E223K	MRPL43_uc001kry.1_5'Flank|MRPL43_uc010qpu.1_5'Flank|MRPL43_uc001krz.1_5'Flank|MRPL43_uc001ksa.1_5'Flank|MRPL43_uc001ksb.1_5'Flank|MRPL43_uc001ksd.1_5'Flank|MRPL43_uc001ksc.2_5'Flank|MRPL43_uc001kse.2_5'Flank|C10orf2_uc001ksg.2_Missense_Mutation_p.E223K|C10orf2_uc001ksi.2_Intron|C10orf2_uc010qpv.1_Intron|C10orf2_uc001ksh.2_Intron	NM_021830	NP_068602	Q96RR1	PEO1_HUMAN	twinkle isoform A	223					cell death|mitochondrial DNA replication|protein hexamerization|protein homooligomerization|transcription from mitochondrial promoter	mitochondrial nucleoid	5'-3' DNA helicase activity|ATP binding|protease binding|single-stranded DNA binding			ovary(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)|BRCA - Breast invasive adenocarcinoma(275;0.224)		GAAGCTCCTAGAGGCTAAATG	0.547													16	23					0	0	1	0	0
SFXN3	81855	broad.mit.edu	37	10	102797185	102797185	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:102797185G>A	uc001ksp.2	+	9	1236	c.780G>A	c.(778-780)CTG>CTA	p.L260L	SFXN3_uc001ksq.2_Silent_p.L260L|SFXN3_uc010qpx.1_Silent_p.L264L	NM_030971	NP_112233	Q9BWM7	SFXN3_HUMAN	sideroflexin 3	260					iron ion homeostasis	integral to membrane|mitochondrial membrane	cation transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		AAGACTTCCTGAAGGTAGGCG	0.537													64	103					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106907399	106907399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:106907399G>A	uc001kyi.1	+	9	1554	c.1327G>A	c.(1327-1329)GAG>AAG	p.E443K		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	443	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CAGTACAGACGAGAACCAAGT	0.473													13	40					0	0	1	0	0
ADD3	120	broad.mit.edu	37	10	111890219	111890219	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:111890219C>T	uc001kyt.3	+	14	2021	c.1707C>T	c.(1705-1707)ATC>ATT	p.I569I	ADD3_uc001kys.3_Silent_p.I569I|ADD3_uc001kyu.2_Silent_p.I569I|ADD3_uc001kyv.2_Silent_p.I569I|ADD3_uc001kyw.2_Silent_p.I569I|ADD3_uc001kyx.2_Silent_p.I142I	NM_016824	NP_058432	Q9UEY8	ADDG_HUMAN	adducin 3 (gamma) isoform a	569						cytoskeleton	actin binding|calmodulin binding|metal ion binding|structural constituent of cytoskeleton			ovary(2)|skin(2)|large_intestine(1)	5		Breast(234;0.052)|Lung NSC(174;0.223)		Epithelial(162;4.15e-05)|all cancers(201;0.000587)|BRCA - Breast invasive adenocarcinoma(275;0.0742)		AGAGGACAATCGAACGTAAAC	0.403													27	77					0	0	1	0	0
ACSL5	51703	broad.mit.edu	37	10	114186546	114186546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:114186546G>A	uc001kzs.2	+	20	1981	c.1840G>A	c.(1840-1842)GTT>ATT	p.V614I	ACSL5_uc001kzt.2_Missense_Mutation_p.V614I|ACSL5_uc001kzu.2_Missense_Mutation_p.V670I|ACSL5_uc009xxz.2_Intron|ACSL5_uc010qrj.1_Missense_Mutation_p.V396I	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	614	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		GTATTCTTAGGTTGTAAGGGA	0.408													12	37					0	0	1	0	0
TDRD1	56165	broad.mit.edu	37	10	115966074	115966074	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:115966074G>A	uc001lbg.1	+	11	1522	c.1369G>A	c.(1369-1371)GAA>AAA	p.E457K	TDRD1_uc001lbf.2_Missense_Mutation_p.E448K|TDRD1_uc001lbh.1_Missense_Mutation_p.E448K|TDRD1_uc001lbi.1_Missense_Mutation_p.E448K|TDRD1_uc010qsc.1_Missense_Mutation_p.E118K|TDRD1_uc001lbj.2_Missense_Mutation_p.E166K	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	457					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		TTCTAAGAAGGAAAATGCAGA	0.363													11	21					0	0	1	0	0
TRUB1	142940	broad.mit.edu	37	10	116732026	116732026	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:116732026C>T	uc001lcd.2	+	6	790	c.729C>T	c.(727-729)TTC>TTT	p.F243F	TRUB1_uc010qsl.1_Silent_p.F145F	NM_139169	NP_631908	Q8WWH5	TRUB1_HUMAN	TruB pseudouridine (psi) synthase homolog 1	243					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding				0		Colorectal(252;0.09)|Breast(234;0.174)|Lung NSC(174;0.245)		Epithelial(162;0.00879)|all cancers(201;0.0243)		CACCATTTTTCACATTAGGTA	0.358													18	53					0	0	1	0	0
PDZD8	118987	broad.mit.edu	37	10	119044791	119044791	+	Silent	SNP	A	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:119044791A>G	uc001lde.1	-	5	1652	c.1453T>C	c.(1453-1455)TTG>CTG	p.L485L		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	485					intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		TCTACTGTCAACCCGGCAGCT	0.428													48	94					0	0	1	0	0
PDZD8	118987	broad.mit.edu	37	10	119100597	119100597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:119100597G>A	uc001lde.1	-	2	1088	c.889C>T	c.(889-891)CCA>TCA	p.P297S		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	297					intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		GTCTGGTATGGAAAAAACGGC	0.353													13	23					0	0	1	0	0
WDR11	55717	broad.mit.edu	37	10	122622429	122622429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:122622429C>T	uc010qtf.1	+	5	947	c.709C>T	c.(709-711)CCT>TCT	p.P237S	WDR11_uc010qte.1_Intron|WDR11_uc001lfd.1_5'UTR	NM_018117	NP_060587	Q9BZH6	WDR11_HUMAN	bromodomain and WD repeat domain containing 2	237						integral to membrane					0						TCAAGAGAAACCTAGGTAAGT	0.373													17	40					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123842527	123842527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:123842527C>T	uc001lfv.2	+	4	872	c.512C>T	c.(511-513)CCC>CTC	p.P171L	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.P171L|TACC2_uc010qtv.1_Missense_Mutation_p.P171L	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	171						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GCTGCCGTCCCCAGTGCTGGA	0.592													13	26					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123845834	123845834	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:123845834G>A	uc001lfv.2	+	4	4179	c.3819G>A	c.(3817-3819)GAG>GAA	p.E1273E	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Silent_p.E1273E|TACC2_uc010qtv.1_Silent_p.E1273E	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1273						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CTGTAGGGGAGCCCCCACTTG	0.602													17	32					0	0	1	0	0
C10orf120	399814	broad.mit.edu	37	10	124457463	124457463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:124457463G>A	uc001lgn.2	-	3	826	c.794C>T	c.(793-795)TCA>TTA	p.S265L		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	265										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				GGGGAGGAATGATTTGCGATC	0.373													28	64					0	0	1	0	0
C10orf137	26098	broad.mit.edu	37	10	127414390	127414390	+	Missense_Mutation	SNP	C	T	T	rs149421957		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:127414390C>T	uc001liq.1	+	6	1068	c.775C>T	c.(775-777)CCC>TCC	p.P259S	C10orf137_uc001lin.2_Missense_Mutation_p.P259S|C10orf137_uc001lio.1_Missense_Mutation_p.P259S|C10orf137_uc001lip.1_5'UTR	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	259					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				TTCTGAAGATCCCAGTGCTTC	0.408													14	19					0	0	1	0	0
PPP2R2D	55844	broad.mit.edu	37	10	133769419	133769419	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:133769419C>T	uc001lks.2	+	7	1458	c.1215C>T	c.(1213-1215)GCC>GCT	p.A405A	PPP2R2D_uc001lkr.2_Silent_p.A211A|PPP2R2D_uc001lkt.2_Silent_p.A211A|PPP2R2D_uc009yay.2_Silent_p.A273A	NM_018461	NP_060931	Q66LE6	2ABD_HUMAN	protein phosphatase 2, regulatory subunit B,	438	WD 7.				cell division|exit from mitosis|mitosis|signal transduction	cytoplasm|protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			skin(1)	1		all_cancers(35;2.16e-12)|all_epithelial(44;2.77e-09)|Lung NSC(174;0.00237)|all_lung(145;0.00354)|Colorectal(31;0.0124)|Breast(234;0.023)|all_neural(114;0.0299)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;7.86e-05)|Epithelial(32;8.82e-05)|all cancers(32;0.000106)|BRCA - Breast invasive adenocarcinoma(275;0.21)		ATGTCATTGCCGTGGCTGCCA	0.507													12	22					0	0	1	0	0
PWWP2B	170394	broad.mit.edu	37	10	134219612	134219612	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:134219612G>A	uc001lll.3	+	2	1637	c.1608G>A	c.(1606-1608)ACG>ACA	p.T536T	PWWP2B_uc009ybe.2_Intron	NM_138499	NP_612508	Q6NUJ5	PWP2B_HUMAN	PWWP domain containing 2 isoform 1	536	PWWP.										0		all_cancers(35;6.69e-12)|all_epithelial(44;1.55e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)|all_hematologic(284;0.224)		OV - Ovarian serous cystadenocarcinoma(35;7.49e-05)|Epithelial(32;0.00016)|all cancers(32;0.000186)		CTCCGACTACGTCGTTCTTGT	0.498													6	50					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	134623944	134623944	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:134623944C>T	uc010qux.1	-	49	6811	c.6811G>A	c.(6811-6813)GAA>AAA	p.E2271K		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		CACTCATCTTCTGAAGGAGAC	0.632													31	49					0	0	1	0	0
KNDC1	85442	broad.mit.edu	37	10	134981782	134981782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:134981782C>T	uc001llz.1	+	3	327	c.326C>T	c.(325-327)CCC>CTC	p.P109L	KNDC1_uc001lma.1_Missense_Mutation_p.P44L	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	109	KIND 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		GCCTTCGTTCCCCCCGAGTTC	0.587													36	77					0	0	1	0	0
TUBGCP2	10844	broad.mit.edu	37	10	135103366	135103366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:135103366G>A	uc001lmg.1	-	9	1679	c.1322C>T	c.(1321-1323)TCC>TTC	p.S441F	TUBGCP2_uc001lmf.1_Missense_Mutation_p.S34F|TUBGCP2_uc010qvc.1_Missense_Mutation_p.S469F|TUBGCP2_uc009ybk.1_Missense_Mutation_p.S441F|TUBGCP2_uc010qvd.1_Missense_Mutation_p.S311F|TUBGCP2_uc001lmh.1_RNA	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	tubulin, gamma complex associated protein 2	441					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		CTGCAGGAAGGACGGGATCTG	0.617													12	30					0	0	1	0	0
SYCE1	93426	broad.mit.edu	37	10	135372429	135372429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr10:135372429C>T	uc001lno.2	-	4	328	c.223G>A	c.(223-225)GGA>AGA	p.G75R	CYP2E1_uc001lnl.1_3'UTR|SYCE1_uc001lnm.2_5'UTR|SYCE1_uc009ybn.2_Missense_Mutation_p.G75R|SYCE1_uc001lnn.2_Missense_Mutation_p.G39R	NM_001143764	NP_001137236	Q8N0S2	SYCE1_HUMAN	synaptonemal complex central element protein 1	75	Potential.				cell division	central element				ovary(1)	1		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		CGGGCCTCTCCTAGGTCTTTA	0.517													17	17					0	0	1	0	0
PHRF1	57661	broad.mit.edu	37	11	608919	608919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:608919C>T	uc001lqe.2	+	14	3594	c.3463C>T	c.(3463-3465)CCC>TCC	p.P1155S	PHRF1_uc010qwc.1_Missense_Mutation_p.P1154S|PHRF1_uc010qwd.1_Missense_Mutation_p.P1153S|PHRF1_uc010qwe.1_Missense_Mutation_p.P1151S|PHRF1_uc009ybz.1_Missense_Mutation_p.P945S|PHRF1_uc009yca.1_RNA	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	1155	Arg-rich.						RNA polymerase binding|zinc ion binding				0						TGTGGCGTGGCCCCGAGACCG	0.701													8	15					0	0	1	0	0
KRTAP5-3	387266	broad.mit.edu	37	11	1629394	1629394	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:1629394C>T	uc001ltw.1	-	1	300	c.222G>A	c.(220-222)AAG>AAA	p.K74K		NM_001012708	NP_001012726	Q6L8H2	KRA53_HUMAN	keratin associated protein 5-3	74	11 X 4 AA repeats of C-C-X-P.					keratin filament				ovary(2)	2		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000618)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)		CACAGCCCCCCTTGCAGCCCC	0.677													88	94					0	0	1	0	0
KCNQ1	3784	broad.mit.edu	37	11	2610036	2610036	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:2610036G>A	uc001lwn.2	+	10	1453	c.1345G>A	c.(1345-1347)GAA>AAA	p.E449K	KCNQ1_uc009ydp.1_Missense_Mutation_p.E233K|KCNQ1_uc001lwo.2_Missense_Mutation_p.E322K	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	449	Cytoplasmic (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	CGACCCCCCAGAAGAGCGGCG	0.562													7	17					0	0	1	0	0
OSBPL5	114879	broad.mit.edu	37	11	3150291	3150291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:3150291G>A	uc001lxk.2	-	2	246	c.88C>T	c.(88-90)CGG>TGG	p.R30W	OSBPL5_uc010qxq.1_5'Flank|OSBPL5_uc009ydw.2_Missense_Mutation_p.R30W|OSBPL5_uc001lxl.2_Missense_Mutation_p.R30W|OSBPL5_uc009ydx.2_Missense_Mutation_p.R54W|OSBPL5_uc001lxm.1_RNA	NM_020896	NP_065947	Q9H0X9	OSBL5_HUMAN	oxysterol-binding protein-like protein 5 isoform	30					cholesterol metabolic process|cholesterol transport|Golgi to plasma membrane transport	cytosol	oxysterol binding|protein binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		AGCAAGTTCCGGGTGAGCTTC	0.662													3	9					0	0	1	0	0
OR51D1	390038	broad.mit.edu	37	11	4661506	4661506	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:4661506G>A	uc010qyk.1	+	1	486	c.486G>A	c.(484-486)CTG>CTA	p.L162L		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	162	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		TATCTGCCCTGACCAGGGGGT	0.527													118	102					0	0	1	0	0
OR52R1	119695	broad.mit.edu	37	11	4825826	4825826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:4825826C>T	uc010qym.1	-	1	22	c.22G>A	c.(22-24)GAC>AAC	p.D8N		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	Error:Variant_position_missing_in_Q8NGF1_after_alignment					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTACTTATGTCATTCAAAATG	0.224													4	10					0	0	1	0	0
OR51A7	119687	broad.mit.edu	37	11	4929233	4929233	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:4929233C>T	uc010qyq.1	+	1	634	c.634C>T	c.(634-636)CTG>TTG	p.L212L		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGACTTGGCACTGATTGTTTT	0.453													40	66					0	0	1	0	0
MMP26	56547	broad.mit.edu	37	11	5010977	5010977	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:5010977G>A	uc001lzv.2	+	2	217	c.199G>A	c.(199-201)GAC>AAC	p.D67N		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	67					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		GAATGGGACAGACCTACTTGA	0.532													15	33					0	0	1	0	0
OR51V1	283111	broad.mit.edu	37	11	5221617	5221617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:5221617G>A	uc010qyz.1	-	1	314	c.314C>T	c.(313-315)TCC>TTC	p.S105F		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	105	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGCAATGCAGGAATCCAAGCT	0.532													17	33					0	0	1	0	0
OR52N2	390077	broad.mit.edu	37	11	5842093	5842093	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:5842093C>T	uc010qzp.1	+	1	528	c.528C>T	c.(526-528)ATC>ATT	p.I176I	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGAACTTCATCCCCCACACCT	0.517													88	75					0	0	1	0	0
ZNF143	7702	broad.mit.edu	37	11	9494243	9494243	+	Silent	SNP	T	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:9494243T>C	uc001mhr.2	+	3	250	c.132T>C	c.(130-132)AAT>AAC	p.N44N	ZNF143_uc009yfu.2_Silent_p.N44N|ZNF143_uc010rby.1_Intron	NM_003442	NP_003433	P52747	ZN143_HUMAN	zinc finger protein 143	44					regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding|zinc ion binding				0				all cancers(16;4.12e-09)|Epithelial(150;2.29e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0212)		ACTTAGAAAATATGGAAGGCG	0.343													39	75					0	0	1	0	0
PTPN5	84867	broad.mit.edu	37	11	18750520	18750521	+	Missense_Mutation	DNP	GC	AT	AT			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:18750520_18750521GC>AT	uc001mpd.2	-	15	2089_2090	c.1658_1659GC>AT	c.(1657-1659)AGC>AAT	p.S553N	IGSF22_uc009yht.2_5'Flank|IGSF22_uc001mpa.2_5'Flank|PTPN5_uc001mpb.2_Missense_Mutation_p.S521N|PTPN5_uc001mpc.2_Missense_Mutation_p.S553N|PTPN5_uc001mpe.2_Missense_Mutation_p.S521N|PTPN5_uc010rdj.1_Missense_Mutation_p.S497N|PTPN5_uc001mpf.2_Missense_Mutation_p.S529N|PTPN5_uc010rdk.1_Missense_Mutation_p.S498N	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	553	Tyrosine-protein phosphatase.					integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						TTTCGTAGAGGCTCATGACGTG	0.619													35	105					0	0	1	0	0
GAS2	2620	broad.mit.edu	37	11	22770718	22770718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:22770718G>A	uc009yie.2	+	6	832	c.526G>A	c.(526-528)GAA>AAA	p.E176K	GAS2_uc001mqm.2_Missense_Mutation_p.E176K|GAS2_uc001mqn.2_RNA|GAS2_uc001mqo.2_Missense_Mutation_p.E176K	NM_001143830	NP_001137302	O43903	GAS2_HUMAN	growth arrest-specific 2	176					cell cycle arrest|cellular component disassembly involved in apoptosis|regulation of cell shape	actin filament|cytosol|membrane				ovary(1)|skin(1)	2						GATTGAACAAGAAGAAACACT	0.378													17	16					0	0	1	0	0
GAS2	2620	broad.mit.edu	37	11	22777493	22777493	+	Silent	SNP	C	T	T	rs139683102		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:22777493C>T	uc009yie.2	+	7	1023	c.717C>T	c.(715-717)TTC>TTT	p.F239F	GAS2_uc001mqm.2_Silent_p.F239F|GAS2_uc001mqn.2_RNA|GAS2_uc001mqo.2_Silent_p.F239F	NM_001143830	NP_001137302	O43903	GAS2_HUMAN	growth arrest-specific 2	239	GAR.				cell cycle arrest|cellular component disassembly involved in apoptosis|regulation of cell shape	actin filament|cytosol|membrane				ovary(1)|skin(1)	2						AGATCCTCTTCATTAGGGTAA	0.398													14	13					0	0	1	0	0
LUZP2	338645	broad.mit.edu	37	11	24784836	24784836	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:24784836C>T	uc001mqs.2	+	5	612	c.378C>T	c.(376-378)ATC>ATT	p.I126I	LUZP2_uc009yif.2_Silent_p.I40I|LUZP2_uc009yig.2_Silent_p.I126I	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	126	Potential.					extracellular region				ovary(1)|skin(1)	2						GCAAAATGATCCGAGACCTCC	0.294													17	21					0	0	1	0	0
LUZP2	338645	broad.mit.edu	37	11	25071603	25071603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:25071603G>A	uc001mqs.2	+	10	1019	c.785G>A	c.(784-786)GGA>GAA	p.G262E	LUZP2_uc009yif.2_Missense_Mutation_p.G176E|LUZP2_uc009yig.2_Missense_Mutation_p.G220E	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	262						extracellular region				ovary(1)|skin(1)	2						AGTGCTTCTGGAAACAATGAG	0.358													35	33					0	0	1	0	0
ANO3	63982	broad.mit.edu	37	11	26484597	26484597	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:26484597T>G	uc001mqt.3	+	4	479	c.334T>G	c.(334-336)TAC>GAC	p.Y112D	ANO3_uc010rdr.1_Missense_Mutation_p.Y96D|ANO3_uc010rds.1_Translation_Start_Site	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	112	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGATAAGGATTACACGGATGA	0.308													5	13					0	0	1	0	0
KIF18A	81930	broad.mit.edu	37	11	28119464	28119464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:28119464G>A	uc001msc.2	-	2	213	c.31C>T	c.(31-33)CAT>TAT	p.H11Y	KIF18A_uc001msd.2_Missense_Mutation_p.H11Y	NM_031217	NP_112494	Q8NI77	KI18A_HUMAN	kinesin family member 18A	11	Kinesin-motor.				blood coagulation|microtubule depolymerization|microtubule-based movement|mitotic metaphase plate congression|mitotic prometaphase|protein transport	caveola|cytosol|kinetochore microtubule|microtubule organizing center|nucleus|ruffle	actin binding|ATP binding|microtubule plus-end binding|plus-end-directed microtubule motor activity|tubulin-dependent ATPase activity|ubiquitin binding			ovary(2)	2						ACTTTCATATGGTGGCACAGG	0.338													35	109					0	0	1	0	0
FSHB	2488	broad.mit.edu	37	11	30255117	30255117	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:30255117G>A	uc001msl.2	+	3	229	c.160G>A	c.(160-162)GAT>AAT	p.D54N	FSHB_uc001msm.2_Missense_Mutation_p.D54N|FSHB_uc001msn.2_Missense_Mutation_p.D54N	NM_000510	NP_000501	P01225	FSHB_HUMAN	follicle stimulating hormone, beta polypeptide	54					cellular nitrogen compound metabolic process|female gamete generation|female pregnancy|ovarian follicle development|peptide hormone processing|progesterone biosynthetic process|spermatogenesis|transforming growth factor beta receptor signaling pathway	cytoplasm|extracellular region|soluble fraction	follicle-stimulating hormone activity|protein heterodimerization activity			ovary(3)	3					Follitropin beta(DB00066)|Thyrotropin Alfa(DB00024)|Urofollitropin(DB00094)	AACTCCTCAGGATCTGGTGTA	0.428													10	32					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	30953327	30953327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:30953327C>T	uc009yjk.1	-	10	1301	c.1232G>A	c.(1231-1233)CGG>CAG	p.R411Q	uc009yjl.1_3'UTR					RecName: Full=Doublecortin domain-containing protein 5;																		CTGCGTTTTCCGTCCAGGTGA	0.383													7	13					0	0	1	0	0
RAG1	5896	broad.mit.edu	37	11	36597025	36597025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:36597025C>T	uc001mwu.3	+	2	2295	c.2171C>T	c.(2170-2172)TCT>TTT	p.S724F	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	724					histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				CTCGAGGCTTCTGGCTCAGTC	0.502									Familial_Hemophagocytic_Lymphohistiocytosis				46	59					0	0	1	0	0
CHST1	8534	broad.mit.edu	37	11	45672209	45672209	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:45672209G>A	uc001mys.1	-	4	936	c.265C>T	c.(265-267)CTG>TTG	p.L89L		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	89	Lumenal (Potential).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		GGCTCAAACAGGTAGAAGACG	0.652													20	55					0	0	1	0	0
PHF21A	51317	broad.mit.edu	37	11	45987079	45987079	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:45987079G>A	uc001ncc.3	-	9	1404	c.780C>T	c.(778-780)ATC>ATT	p.I260I	PHF21A_uc001ncb.3_Silent_p.I261I|PHF21A_uc009ykx.2_Silent_p.I261I|PHF21A_uc001nce.2_Silent_p.I261I|PHF21A_uc001nca.1_5'UTR	NM_001101802	NP_001095272	Q96BD5	PF21A_HUMAN	BRAF35/HDAC2 complex isoform a	260					blood coagulation|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						CGGGCCTCTGGATAAGCTGAG	0.562											OREG0020936	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	10					0	0	1	0	0
MADD	8567	broad.mit.edu	37	11	47350211	47350211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:47350211C>T	uc001ner.1	+	35	4986	c.4795C>T	c.(4795-4797)CCT>TCT	p.P1599S	MADD_uc001neq.2_Missense_Mutation_p.P1540S|MADD_uc001nev.1_Silent_p.F1473F|MADD_uc001nes.1_Missense_Mutation_p.P1517S|MADD_uc001net.1_Missense_Mutation_p.P1560S|MADD_uc009yln.1_Missense_Mutation_p.P1493S|MADD_uc001neu.1_Missense_Mutation_p.P1497S|MADD_uc001nex.2_Silent_p.F1575F|MADD_uc001nez.2_Missense_Mutation_p.P1496S|MADD_uc001new.2_Missense_Mutation_p.P1539S	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	1599					activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		GGTTTTAGTTCCTGAAATTAA	0.582													30	21					0	0	1	0	0
OR4C3	256144	broad.mit.edu	37	11	48346753	48346753	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:48346753C>T	uc010rhv.1	+	1	261	c.261C>T	c.(259-261)TTC>TTT	p.F87F		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGTATTTTTTCCTGGCCAACC	0.453													7	57					0	0	1	0	0
OR4C3	256144	broad.mit.edu	37	11	48347050	48347050	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:48347050C>T	uc010rhv.1	+	1	558	c.558C>T	c.(556-558)CTC>CTT	p.L186L		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	159	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTCAGCTCCTCCTGGTCCTTT	0.527													16	95					0	0	1	0	0
LOC646813	646813	broad.mit.edu	37	11	50368798	50368798	+	RNA	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:50368798G>A	uc001nhe.2	+	2		c.102G>A			LOC646813_uc001nhf.1_RNA|LOC646813_uc001nhg.1_RNA	NR_024504				Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit09-11-09-R.												0						AACTGTAGGTGAAATACATGA	0.318													10	32					0	0	1	0	0
OR4A15	81328	broad.mit.edu	37	11	55136294	55136294	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:55136294C>T	uc010rif.1	+	1	935	c.935C>T	c.(934-936)CCA>CTA	p.P312L		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	312	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATGCTGAACCCACTAATCTAT	0.388													73	67					0	0	1	0	0
OR4S2	219431	broad.mit.edu	37	11	55419021	55419021	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:55419021C>T	uc001nhs.1	+	1	642	c.642C>T	c.(640-642)ATC>ATT	p.I214I		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				TCTTGCTAATCTCCTACAGCA	0.488													50	40					0	0	1	0	0
OR5D13	390142	broad.mit.edu	37	11	55541605	55541605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:55541605G>A	uc010ril.1	+	1	692	c.692G>A	c.(691-693)CGA>CAA	p.R231Q		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				ATGAAGATGCGATCTGCAAGT	0.423													48	35					0	0	1	0	0
OR5L1	219437	broad.mit.edu	37	11	55579090	55579090	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:55579090C>T	uc001nhw.1	+	1	148	c.148C>T	c.(148-150)CAG>TAG	p.Q50*		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	50	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				TGCACTGATTCAGGTCAGCTC	0.483													155	151					0	0	1	0	0
OR5L2	26338	broad.mit.edu	37	11	55595369	55595369	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:55595369C>T	uc001nhy.1	+	1	675	c.675C>T	c.(673-675)ATC>ATT	p.I225I		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				TCACCACTATCCTGAAGATAC	0.483										HNSCC(27;0.073)			23	94					0	0	1	0	0
OR8J3	81168	broad.mit.edu	37	11	55904272	55904272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:55904272G>A	uc010riz.1	-	1	923	c.923C>T	c.(922-924)CCA>CTA	p.P308L		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	308	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					GGAGTAACATGGATTTTCCAT	0.313													17	52					0	0	1	0	0
OR8J3	81168	broad.mit.edu	37	11	55905009	55905009	+	Silent	SNP	G	A	A	rs144645378		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:55905009G>A	uc010riz.1	-	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.F62F(1)		skin(2)	2	Esophageal squamous(21;0.00693)					GATGTCTCAGGAAAAAGTACA	0.438													34	127					0	0	1	0	0
OR5M9	390162	broad.mit.edu	37	11	56230598	56230598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:56230598C>T	uc010rjj.1	-	1	280	c.280G>A	c.(280-282)GGA>AGA	p.G94R		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					ACCAAGCATCCCACATAGGAA	0.493													48	45					0	0	1	0	0
P2RX3	5024	broad.mit.edu	37	11	57114888	57114888	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:57114888G>A	uc001nju.2	+	4	404	c.328_splice	c.e4-1	p.S110_splice		NM_002559	NP_002550	P56373	P2RX3_HUMAN	purinergic receptor P2X3						positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						TCTGCCCACAGAGTGAGGAGA	0.622													8	2					0	0	1	0	0
P2RX3	5024	broad.mit.edu	37	11	57136835	57136835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:57136835G>A	uc001nju.2	+	11	1080	c.1004G>A	c.(1003-1005)GGA>GAA	p.G335E		NM_002559	NP_002550	P56373	P2RX3_HUMAN	purinergic receptor P2X3	335	Helical; Name=2; (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						CTCCTCCAGGGAACTGTTCTC	0.627													61	158					0	0	1	0	0
SLC43A1	8501	broad.mit.edu	37	11	57256811	57256811	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:57256811G>A	uc001nkk.2	-	12	1366	c.1248C>T	c.(1246-1248)CTC>CTT	p.L416L	SLC43A1_uc001nkl.2_Silent_p.L416L	NM_003627	NP_003618	O75387	LAT3_HUMAN	solute carrier family 43, member 1	416					cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	neutral amino acid transmembrane transporter activity				0						TGGCATTGGTGAGCTTTTGGA	0.542													37	141					0	0	1	0	0
GLYATL1	92292	broad.mit.edu	37	11	58723273	58723273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:58723273G>A	uc001nnf.2	+	8	1058	c.682G>A	c.(682-684)GAA>AAA	p.E228K	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Missense_Mutation_p.E259K|GLYATL1_uc001nni.1_Missense_Mutation_p.E228K|GLYATL1_uc001nnj.1_Missense_Mutation_p.E228K			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	228						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	CCCTTCTTGTGAAGTAGGAAT	0.512													9	25					0	0	1	0	0
FAM111B	374393	broad.mit.edu	37	11	58893163	58893163	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:58893163C>T	uc001nnl.2	+	4	1836	c.1593C>T	c.(1591-1593)TCC>TCT	p.S531S	FAM111B_uc001nnm.2_Silent_p.S501S|FAM111B_uc010rko.1_Silent_p.S501S	NM_198947	NP_945185	Q6SJ93	F111B_HUMAN	hypothetical protein LOC374393 isoform a	531							catalytic activity			ovary(2)	2						ATTGGTTTTCCATTGAGCCAT	0.388													68	50					0	0	1	0	0
OR4D6	219983	broad.mit.edu	37	11	59224646	59224646	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:59224646C>T	uc010rku.1	+	1	213	c.213C>T	c.(211-213)ATC>ATT	p.I71I		NM_001004708	NP_001004708	Q8NGJ1	OR4D6_HUMAN	olfactory receptor, family 4, subfamily D,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCCTGGACATCGTTTTTTCAT	0.463													41	37					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62291225	62291225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:62291225G>A	uc001ntl.2	-	5	10964	c.10664C>T	c.(10663-10665)CCC>CTC	p.P3555L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	3555					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TTTCACCTTGGGGCCTTTCAA	0.468													67	180					0	0	1	0	0
RASGRP2	10235	broad.mit.edu	37	11	64502688	64502688	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:64502688C>T	uc009ypu.2	-	12	1535	c.1308G>A	c.(1306-1308)CGG>CGA	p.R436R	RASGRP2_uc001oat.2_Silent_p.R338R|RASGRP2_uc001oau.2_Silent_p.R291R|RASGRP2_uc009ypv.2_Silent_p.R436R|RASGRP2_uc009ypw.2_Silent_p.R436R	NM_001098671	NP_001092141	Q7LDG7	GRP2_HUMAN	RAS guanyl releasing protein 2	436	EF-hand 1.				platelet activation|Ras protein signal transduction|regulation of cell growth|regulation of small GTPase mediated signal transduction	cell junction|cytosol|ruffle membrane|synapse|synaptosome	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity				0						CGTCAAAGTTCCGGAACACAG	0.572													24	16					0	0	1	0	0
MAP4K2	5871	broad.mit.edu	37	11	64559739	64559739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:64559739G>A	uc001obh.2	-	26	1911	c.1819C>T	c.(1819-1821)CCC>TCC	p.P607S	MAP4K2_uc001obg.2_RNA|MAP4K2_uc001obi.2_Missense_Mutation_p.P599S	NM_004579	NP_004570	Q12851	M4K2_HUMAN	mitogen-activated protein kinase kinase kinase	607	CNH.				activation of JUN kinase activity|immune response|positive regulation of JNK cascade|vesicle targeting	basolateral plasma membrane|Golgi membrane|soluble fraction	ATP binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(1)|pancreas(1)	2						CCCGTGTAGGGGTTCCGCACT	0.697													15	16					0	0	1	0	0
EHBP1L1	254102	broad.mit.edu	37	11	65347940	65347941	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:65347940_65347941CC>TT	uc001oeo.3	+	6	889_890	c.624_625CC>TT	c.(622-627)GTCCCC>GTTTCC	p.P209S	EHBP1L1_uc001oep.1_5'Flank	NM_001099409	NP_001092879	Q8N3D4	EH1L1_HUMAN	tangerin	209										central_nervous_system(1)	1						GGGCTCGAGTCCCCCAGCCAGG	0.634													14	62					0	0	1	0	0
TMEM151A	256472	broad.mit.edu	37	11	66062051	66062051	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:66062051C>T	uc001ohl.2	+	2	446	c.334C>T	c.(334-336)CTC>TTC	p.L112F		NM_153266	NP_694998	Q8N4L1	T151A_HUMAN	transmembrane protein 151A	112	Helical; (Potential).					integral to membrane				central_nervous_system(1)	1						CCTCTACCTCCTCTACCTGGC	0.721													21	24					0	0	1	0	0
SLC29A2	3177	broad.mit.edu	37	11	66136998	66136998	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:66136998G>A	uc001oht.2	-	3	346	c.117C>T	c.(115-117)TTC>TTT	p.F39F	SLC29A2_uc001ohs.2_5'UTR|SLC29A2_uc010rpb.1_RNA|SLC29A2_uc009yrf.2_5'UTR|SLC29A2_uc001ohu.2_Silent_p.F39F|SLC29A2_uc001ohv.2_Silent_p.F39F|uc001ohw.1_RNA	NM_001532	NP_001523	Q14542	S29A2_HUMAN	solute carrier family 29 (nucleoside	39					cell proliferation|nucleobase, nucleoside and nucleotide metabolic process	basolateral plasma membrane|integral to plasma membrane|nuclear membrane|nucleolus	nucleoside transmembrane transporter activity			ovary(1)	1						GTCGCGCCTGGAAGTACTGCC	0.502													75	205					0	0	1	0	0
CTSF	8722	broad.mit.edu	37	11	66333340	66333340	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:66333340A>T	uc001oip.2	-	7	1016	c.926T>A	c.(925-927)TTT>TAT	p.F309Y		NM_003793	NP_003784	Q9UBX1	CATF_HUMAN	cathepsin F precursor	309					proteolysis	lysosome	cysteine-type endopeptidase activity				0						CTGGTTGAGAAACCACTGGCC	0.612													30	29					0	0	1	0	0
CTSF	8722	broad.mit.edu	37	11	66335115	66335115	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:66335115G>A	uc001oip.2	-	3	421	c.331C>T	c.(331-333)CTG>TTG	p.L111L		NM_003793	NP_003784	Q9UBX1	CATF_HUMAN	cathepsin F precursor	111					proteolysis	lysosome	cysteine-type endopeptidase activity				0						AGCTCATCCAGGACTTGGAAG	0.612													85	46					0	0	1	0	0
SPTBN2	6712	broad.mit.edu	37	11	66466947	66466947	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:66466947G>A	uc001ojd.2	-	17	3778	c.3706C>T	c.(3706-3708)CGC>TGC	p.R1236C		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1236	Spectrin 9.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						ACCAGCTGGCGGCCAGCCTCC	0.552													50	52					0	0	1	0	0
KRTAP5-10	387273	broad.mit.edu	37	11	71276950	71276950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:71276950C>T	uc001oqt.1	+	1	342	c.317C>T	c.(316-318)TCT>TTT	p.S106F		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	106	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						GGCTGTGGTTCTTGTGGGGGC	0.677													76	81					0	0	1	0	0
CLPB	81570	broad.mit.edu	37	11	72083978	72083978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:72083978G>A	uc001osj.2	-	5	777	c.727C>T	c.(727-729)CCC>TCC	p.P243S	CLPB_uc010rqx.1_Missense_Mutation_p.P198S|CLPB_uc010rqy.1_Intron|CLPB_uc001osk.2_Intron|CLPB_uc009ytg.2_Intron|CLPB_uc010rqz.1_Intron	NM_030813	NP_110440	Q9H078	CLPB_HUMAN	caseinolytic peptidase B	243					cellular response to heat		ATP binding|nucleoside-triphosphatase activity|protein binding			pancreas(1)	1						CCGCCAGCGGGGAGTCCTAGC	0.527													65	66					0	0	1	0	0
PDE2A	5138	broad.mit.edu	37	11	72288613	72288613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:72288613C>T	uc010rrc.1	-	31	2884	c.2641G>A	c.(2641-2643)GCG>ACG	p.A881T	PDE2A_uc001oso.2_Missense_Mutation_p.A860T|PDE2A_uc010rra.1_Missense_Mutation_p.A874T|PDE2A_uc001osn.2_Missense_Mutation_p.A625T|PDE2A_uc010rrb.1_Missense_Mutation_p.A872T|PDE2A_uc010rrd.1_Missense_Mutation_p.A766T	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	881	Catalytic (By similarity).				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	AGCTCTGCCGCTTTGGGGAAC	0.612													42	30					0	0	1	0	0
ARAP1	116985	broad.mit.edu	37	11	72397146	72397146	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:72397146G>A	uc001osu.2	-	34	4465	c.4276C>T	c.(4276-4278)CGA>TGA	p.R1426*	ARAP1_uc001osv.2_Nonsense_Mutation_p.R1415*|ARAP1_uc001osr.2_Nonsense_Mutation_p.R1186*|ARAP1_uc001oss.2_Nonsense_Mutation_p.R1181*|ARAP1_uc009yth.2_Nonsense_Mutation_p.R1109*|ARAP1_uc010rre.1_Nonsense_Mutation_p.R1170*	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1426					actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						TCACTACCTCGAAGGGGGATC	0.652													42	35					0	0	1	0	0
ARAP1	116985	broad.mit.edu	37	11	72408111	72408111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:72408111G>A	uc001osu.2	-	22	3272	c.3083C>T	c.(3082-3084)TCC>TTC	p.S1028F	ARAP1_uc001osv.2_Missense_Mutation_p.S1028F|ARAP1_uc001osr.2_Missense_Mutation_p.S788F|ARAP1_uc001oss.2_Missense_Mutation_p.S783F|ARAP1_uc009yth.2_Missense_Mutation_p.S722F|ARAP1_uc010rre.1_Missense_Mutation_p.S783F	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1028	Rho-GAP.				actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						GAGCGCCGAGGAAACATCATC	0.667													41	36					0	0	1	0	0
KCTD14	65987	broad.mit.edu	37	11	77727910	77727910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:77727910G>A	uc001oyw.3	-	2	522	c.497C>T	c.(496-498)TCC>TTC	p.S166F		NM_023930	NP_076419	Q9BQ13	KCD14_HUMAN	potassium channel tetramerisation domain	166						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1e-24)			AAGCACGCTGGACTTCCGTGC	0.527													49	117					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78516398	78516398	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:78516398G>A	uc001ozl.3	-	15	2581	c.2118C>T	c.(2116-2118)TTC>TTT	p.F706F		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	706	Extracellular (Potential).|EGF-like 5.				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						TGTCCGGGAGGAAGGTTCCGT	0.607													22	13					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78516487	78516487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:78516487C>T	uc001ozl.3	-	15	2492	c.2029G>A	c.(2029-2031)GAA>AAA	p.E677K		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	677	EGF-like 4.|Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CAGTGGCATTCGCCTCTCACG	0.592													6	9					0	0	1	0	0
GRM5	2915	broad.mit.edu	37	11	88780987	88780987	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:88780987C>T	uc001pcq.2	-	1	254	c.54G>A	c.(52-54)GGG>GGA	p.G18G	GRM5_uc009yvm.2_Silent_p.G18G|GRM5_uc009yvn.1_Silent_p.G18G	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	18					activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	ACTGTGCACTCCCACGGACAT	0.468													36	35					0	0	1	0	0
NAALAD2	10003	broad.mit.edu	37	11	89911136	89911136	+	Missense_Mutation	SNP	G	A	A	rs150474449		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:89911136G>A	uc001pdf.3	+	16	1818	c.1709G>A	c.(1708-1710)CGA>CAA	p.R570Q	NAALAD2_uc009yvx.2_Missense_Mutation_p.R537Q|NAALAD2_uc009yvy.2_Intron	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	570	Extracellular (Potential).|NAALADase.				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				GCTCAATTACGAGGAGCACTG	0.348													36	26					0	0	1	0	0
HEPHL1	341208	broad.mit.edu	37	11	93845059	93845059	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:93845059G>A	uc001pep.2	+	20	3636	c.3479G>A	c.(3478-3480)TGA>TAA	p.*1160*	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	1160					copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				GATGCTCTGTGAACCATCTGG	0.547													140	132					0	0	1	0	0
FUT4	2526	broad.mit.edu	37	11	94278590	94278590	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:94278590T>A	uc001pez.2	+	1	1574	c.1291T>A	c.(1291-1293)TTG>ATG	p.L431M	PIWIL4_uc010rue.1_Intron|PIWIL4_uc009ywk.1_5'Flank	NM_002033	NP_002024	P22083	FUT4_HUMAN	fucosyltransferase 4	431	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane|membrane fraction	alpha(1,3)-fucosyltransferase activity			skin(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				GCGCAACGCGTTGCTCGCTGG	0.622													10	27					0	0	1	0	0
KDM4DL	390245	broad.mit.edu	37	11	94759477	94759477	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:94759477G>A	uc010ruf.1	+	1	1056	c.756G>A	c.(754-756)AAG>AAA	p.K252K		NM_001161630	NP_001155102	B2RXH2	KD4DL_HUMAN	lysine (K)-specific demethylase 4D-like	252	JmjC.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CAGTTCTCAAGGAAAATGGGA	0.552													8	27					0	0	1	0	0
ANGPTL5	253935	broad.mit.edu	37	11	101771168	101771168	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:101771168A>T	uc001pgl.2	-	7	1250	c.654T>A	c.(652-654)GAT>GAA	p.D218E		NM_178127	NP_835228	Q86XS5	ANGL5_HUMAN	angiopoietin-like 5 precursor	218	Fibrinogen C-terminal.				signal transduction	extracellular space	receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.043)		BRCA - Breast invasive adenocarcinoma(274;0.0328)		AACCTAGAAGATCTCCAAATC	0.348													16	67					0	0	1	0	0
MMP3	4314	broad.mit.edu	37	11	102709923	102709923	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:102709923G>A	uc001phj.1	-	7	1052	c.987C>T	c.(985-987)ATC>ATT	p.I329I		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	329	Hemopexin-like 1.				collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	AAAATGAAGAGATCAAATGCA	0.363													26	63					0	0	1	0	0
DRD2	1813	broad.mit.edu	37	11	113283325	113283325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:113283325G>A	uc001pnz.2	-	6	1412	c.1091C>T	c.(1090-1092)TCC>TTC	p.S364F	DRD2_uc010rwv.1_Missense_Mutation_p.S363F|DRD2_uc001poa.3_Missense_Mutation_p.S364F|DRD2_uc001pob.3_Missense_Mutation_p.S335F	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	364	Cytoplasmic (By similarity).|Interaction with PPP1R9B (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	CTTCTGCTGGGAGAGCTTCCT	0.572													42	11					0	0	1	0	0
SIK3	23387	broad.mit.edu	37	11	116746668	116746668	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:116746668G>A	uc001ppy.2	-	9	1015	c.979C>T	c.(979-981)CGA>TGA	p.R327*	SIK3_uc001ppz.2_Nonsense_Mutation_p.R226*|SIK3_uc001pqa.2_Intron	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	327						cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						CTCTTATGTCGATCACACAGC	0.473													34	11					0	0	1	0	0
MLL	4297	broad.mit.edu	37	11	118375357	118375357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:118375357C>T	uc001pta.2	+	27	8764	c.8741C>T	c.(8740-8742)TCT>TTT	p.S2914F	MLL_uc001ptb.2_Missense_Mutation_p.S2917F	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2914					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GTCTCTTCCTCTATCTCAGCA	0.478			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								115	44					0	0	1	0	0
OR8D1	283159	broad.mit.edu	37	11	124180116	124180116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:124180116G>A	uc010sag.1	-	1	547	c.547C>T	c.(547-549)CCC>TCC	p.P183S		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		TTGAGGAGGGGAAGAACATCA	0.458													21	12					0	0	1	0	0
OR8D2	283160	broad.mit.edu	37	11	124189203	124189203	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:124189203C>T	uc010sah.1	-	1	891	c.891G>A	c.(889-891)GTG>GTA	p.V297V		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		GTGCATTTTTCACATCCTTGT	0.403													44	18					0	0	1	0	0
OR8B2	26595	broad.mit.edu	37	11	124252919	124252919	+	Silent	SNP	G	A	A	rs2320234	byFrequency	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:124252919G>A	uc010sai.1	-	1	321	c.321C>T	c.(319-321)TTC>TTT	p.F107F		NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		CAGAGATGACGAAAAAGAGAA	0.398													45	17					0	0	1	0	0
IGSF9B	22997	broad.mit.edu	37	11	133795684	133795684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:133795684C>T	uc001qgx.3	-	14	2215	c.1984G>A	c.(1984-1986)GAT>AAT	p.D662N	IGSF9B_uc001qgy.1_Missense_Mutation_p.D504N	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	662	Fibronectin type-III 2.|Extracellular (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		GGGATGCCATCGTCGAGCAAC	0.597													21	11					0	0	1	0	0
GLB1L2	89944	broad.mit.edu	37	11	134244587	134244587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:134244587C>T	uc001qhp.2	+	18	1987	c.1799C>T	c.(1798-1800)CCC>CTC	p.P600L	GLB1L2_uc009zdg.1_RNA	NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	600					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		CTCCCAGGTCCCTGGTTGAGC	0.592													95	43					0	0	1	0	0
B3GAT1	27087	broad.mit.edu	37	11	134254059	134254059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:134254059C>T	uc001qhq.2	-	4	397	c.136G>A	c.(136-138)GAA>AAA	p.E46K	B3GAT1_uc001qhr.2_Missense_Mutation_p.E46K|B3GAT1_uc010scv.1_Missense_Mutation_p.E59K	NM_018644	NP_061114	Q9P2W7	B3GA1_HUMAN	beta-1,3-glucuronyltransferase 1	46	Lumenal (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|metal ion binding			ovary(1)	1	all_hematologic(175;0.127)	all_cancers(12;1.39e-23)|all_epithelial(12;7.17e-17)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|Medulloblastoma(222;0.0125)|all_neural(223;0.0137)|Esophageal squamous(93;0.0559)		Epithelial(10;2.58e-11)|all cancers(11;5.75e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.000879)|Lung(977;0.0864)		GGCGGCGTTTCGCGTCGGGGG	0.706													13	4					0	0	1	0	0
B4GALNT3	283358	broad.mit.edu	37	12	670581	670581	+	Silent	SNP	A	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:670581A>C	uc001qii.1	+	20	2961	c.2961A>C	c.(2959-2961)CGA>CGC	p.R987R	B4GALNT3_uc001qik.1_Silent_p.R536R	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	987	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			ATTCCAAGCGAGGCATGTGGA	0.617													13	17					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2705156	2705156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:2705156C>T	uc009zdu.1	+	20	3093	c.2780C>T	c.(2779-2781)TCC>TTC	p.S927F	CACNA1C_uc009zdv.1_Missense_Mutation_p.S924F|CACNA1C_uc001qkb.2_Missense_Mutation_p.S927F|CACNA1C_uc001qkc.2_Missense_Mutation_p.S927F|CACNA1C_uc001qke.2_Missense_Mutation_p.S927F|CACNA1C_uc001qkf.2_Missense_Mutation_p.S927F|CACNA1C_uc001qjz.2_Missense_Mutation_p.S927F|CACNA1C_uc001qkd.2_Missense_Mutation_p.S927F|CACNA1C_uc001qkg.2_Missense_Mutation_p.S927F|CACNA1C_uc009zdw.1_Missense_Mutation_p.S927F|CACNA1C_uc001qkh.2_Missense_Mutation_p.S927F|CACNA1C_uc001qkl.2_Missense_Mutation_p.S927F|CACNA1C_uc001qkn.2_Missense_Mutation_p.S927F|CACNA1C_uc001qko.2_Missense_Mutation_p.S927F|CACNA1C_uc001qkp.2_Missense_Mutation_p.S927F|CACNA1C_uc001qkr.2_Missense_Mutation_p.S927F|CACNA1C_uc001qku.2_Missense_Mutation_p.S927F|CACNA1C_uc001qkq.2_Missense_Mutation_p.S927F|CACNA1C_uc001qks.2_Missense_Mutation_p.S927F|CACNA1C_uc001qkt.2_Missense_Mutation_p.S927F|CACNA1C_uc001qka.1_Missense_Mutation_p.S462F|CACNA1C_uc001qki.1_Missense_Mutation_p.S663F|CACNA1C_uc001qkj.1_Missense_Mutation_p.S663F|CACNA1C_uc001qkk.1_Missense_Mutation_p.S663F|CACNA1C_uc001qkm.1_Missense_Mutation_p.S663F|CACNA1C_uc001qkw.2_Missense_Mutation_p.S216F	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	927	III.|Extracellular (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CAGCACACCTCCTTCAGGAAC	0.542													23	44					0	0	1	0	0
KCNA5	3741	broad.mit.edu	37	12	5153808	5153808	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:5153808C>T	uc001qni.2	+	1	724	c.495C>T	c.(493-495)TTC>TTT	p.F165F		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	165						Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						AGTACTTCTTCGACCGCAACC	0.667													33	50					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5687656	5687656	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:5687656G>A	uc001qnm.2	-	22	2334	c.2262C>T	c.(2260-2262)TTC>TTT	p.F754F		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	759	Helical; (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						AGGAGGCCACGAAGAGGGTGA	0.552													11	14					0	0	1	0	0
LEPREL2	10536	broad.mit.edu	37	12	6941017	6941017	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:6941017T>C	uc001qra.1	+	8	1185	c.1151T>C	c.(1150-1152)CTG>CCG	p.L384P	LEPREL2_uc001qqz.1_Missense_Mutation_p.L191P|LEPREL2_uc001qrb.1_Missense_Mutation_p.L191P	NM_014262	NP_055077	Q8IVL6	P3H3_HUMAN	leprecan-like 2 precursor	384					negative regulation of cell proliferation	endoplasmic reticulum	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity				0					L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CTCCGATCCCTGGGGGAGAAG	0.612													4	11					0	0	1	0	0
USP5	8078	broad.mit.edu	37	12	6975226	6975226	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:6975226G>A	uc001qri.3	+	20	2621	c.2562G>A	c.(2560-2562)CAG>CAA	p.Q854Q	USP5_uc001qrh.3_Silent_p.Q831Q|TPI1_uc001qrk.2_5'Flank|TPI1_uc010sfo.1_5'Flank	NM_001098536	NP_001092006	P45974	UBP5_HUMAN	ubiquitin specific peptidase 5 isoform 1	854					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process	lysosome	cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|zinc ion binding			lung(2)|breast(1)|skin(1)	4						ACTTCTACCAGAGAGTGGCCA	0.577													11	35					0	0	1	0	0
ENO2	2026	broad.mit.edu	37	12	7028903	7028903	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:7028903C>T	uc001qru.1	+	8	1063	c.841C>T	c.(841-843)CAG>TAG	p.Q281*	ENO2_uc009zfi.1_Nonsense_Mutation_p.Q281*|ENO2_uc010sfq.1_Nonsense_Mutation_p.Q238*|ENO2_uc001qrv.1_Nonsense_Mutation_p.Q281*	NM_001975	NP_001966	P09104	ENOG_HUMAN	enolase 2	281					gluconeogenesis|glycolysis	phosphopyruvate hydratase complex|plasma membrane	magnesium ion binding|phosphopyruvate hydratase activity				0						GGCACTCTACCAGGACTTTGT	0.557													25	39					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7651486	7651486	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:7651486C>T	uc001qsz.3	-	4	884	c.756G>A	c.(754-756)GAG>GAA	p.E252E	CD163_uc001qta.3_Silent_p.E252E|CD163_uc009zfw.2_Silent_p.E252E	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	252	SRCR 2.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CTCCAGCATCCTCAGCATGAT	0.428													52	105					0	0	1	0	0
CLEC2B	9976	broad.mit.edu	37	12	10007084	10007084	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:10007084C>T	uc001qwn.2	-	4	895	c.238_splice	c.e4-1	p.N80_splice		NM_005127	NP_005118	Q92478	CLC2B_HUMAN	C-type lectin, superfamily member 2							integral to plasma membrane	sugar binding				0						TAAGAAAATTCTTTAGAGACA	0.368													12	38					0	0	1	0	0
KLRC1	3821	broad.mit.edu	37	12	10603648	10603648	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:10603648C>T	uc001qyl.2	-	2	272	c.108G>A	c.(106-108)CAG>CAA	p.Q36Q	KLRC1_uc009zhm.1_Silent_p.Q36Q|KLRC1_uc001qym.2_Silent_p.Q36Q|KLRC1_uc001qyn.2_Silent_p.Q36Q|KLRC1_uc001qyo.2_Silent_p.Q36Q	NM_002259	NP_002250	P26715	NKG2A_HUMAN	killer cell lectin-like receptor subfamily C,	36	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|regulation of immune response	integral to plasma membrane	sugar binding|transmembrane receptor activity				0						AGGTTATTTCCTGTTCAGTTG	0.393													46	56					0	0	1	0	0
KLRA1	10748	broad.mit.edu	37	12	10750659	10750659	+	RNA	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:10750659C>T	uc010shf.1	-	2		c.464G>A			KLRA1_uc010shg.1_RNA|KLRA1_uc009zho.2_RNA|KLRA1_uc009zhn.2_RNA	NM_006611				Homo sapiens Ly-49L (LY49L) mRNA, complete cds.												0						ATCAGTTTTCCCAGGCCTTTG	0.368													54	66					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13828763	13828763	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:13828763C>T	uc001rbt.2	-	4	1220	c.1041G>A	c.(1039-1041)AGG>AGA	p.R347R		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	347	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AGGACAAATTCCTCCCCTCAA	0.403													19	35					0	0	1	0	0
ATF7IP	55729	broad.mit.edu	37	12	14613723	14613723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:14613723C>T	uc001rbw.2	+	9	2611	c.2453C>T	c.(2452-2454)TCT>TTT	p.S818F	ATF7IP_uc010shs.1_3'UTR|ATF7IP_uc001rbu.2_Missense_Mutation_p.S818F|ATF7IP_uc001rbv.1_Missense_Mutation_p.S817F|ATF7IP_uc001rbx.2_Missense_Mutation_p.S817F|ATF7IP_uc010sht.1_3'UTR|ATF7IP_uc001rby.3_Missense_Mutation_p.S818F|ATF7IP_uc001rca.2_Missense_Mutation_p.S818F	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	818					DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						GAATTCATTTCTGTGCAAAGC	0.473													23	56					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14792868	14792868	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:14792868C>T	uc001rcd.2	-	19	2222	c.2085G>A	c.(2083-2085)GTG>GTA	p.V695V		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	695	Cytoplasmic (Potential).|Protein kinase.				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						TGGAATTTTCCACTCTGAAAA	0.343													18	36					0	0	1	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18715676	18715676	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:18715676G>A	uc001rdt.2	+	26	3623	c.3507G>A	c.(3505-3507)TTG>TTA	p.L1169L	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Silent_p.L1210L|PIK3C2G_uc010sic.1_Silent_p.L988L	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1169	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				CTGTTAAATTGAATAACTTGA	0.383													4	6					0	0	1	0	0
PDE3A	5139	broad.mit.edu	37	12	20799495	20799495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:20799495C>T	uc001reh.1	+	11	2345	c.2323C>T	c.(2323-2325)CTC>TTC	p.L775F		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	775	Catalytic (By similarity).				lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	TATTCCAGGCCTCTCAACTGT	0.413													25	56					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21229480	21229480	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:21229480G>A	uc010sil.1	+	15	2090	c.2025G>A	c.(2023-2025)AGG>AGA	p.R675R	LST-3TM12_uc010sim.1_Silent_p.R614R|LST-3TM12_uc010sin.1_Silent_p.R567R			Q9NPD5	SO1B3_HUMAN	SubName: Full=Liver-specific organic anion transporter 3TM13; SubName: Full=Organic anion transporter LST-3c;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					GGGCTTGTAGGATATATAATT	0.343													58	87					0	0	1	0	0
LRMP	4033	broad.mit.edu	37	12	25259938	25259938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:25259938C>T	uc001rgh.2	+	20	2244	c.1210C>T	c.(1210-1212)CTT>TTT	p.L404F	LRMP_uc010sja.1_Missense_Mutation_p.L404F|LRMP_uc010sjb.1_Missense_Mutation_p.L351F|LRMP_uc001rgi.2_RNA|LRMP_uc010sjc.1_Missense_Mutation_p.L404F|LRMP_uc010sjd.1_Missense_Mutation_p.L351F	NM_006152	NP_006143	Q12912	LRMP_HUMAN	lymphoid-restricted membrane protein	460	Cytoplasmic (Potential).				vesicle fusion|vesicle targeting	endoplasmic reticulum membrane|integral to plasma membrane				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Colorectal(261;0.11)					GAAGCCAAGTCTTTCTGAAAA	0.343													4	17					0	0	1	0	0
RASSF8	11228	broad.mit.edu	37	12	26218212	26218212	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:26218212C>T	uc001rgx.2	+	3	1106	c.885C>T	c.(883-885)ATC>ATT	p.I295I	RASSF8_uc001rgy.2_Silent_p.I295I|RASSF8_uc001rgz.2_Silent_p.I295I|RASSF8_uc009zjd.1_Silent_p.I295I|RASSF8_uc009zje.1_Silent_p.I295I	NM_007211	NP_009142	Q8NHQ8	RASF8_HUMAN	Ras association (RalGDS/AF-6) domain family	295					signal transduction						0	Colorectal(261;0.0847)					AAGGAAAGATCGGTAAGGTCA	0.468													27	57					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	33031001	33031001	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:33031001G>A	uc001rlj.3	-	3	928	c.813C>T	c.(811-813)GTC>GTT	p.V271V	PKP2_uc001rlk.3_Silent_p.V271V|PKP2_uc010skj.1_Silent_p.V271V	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	271					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					CCAGCGGCCTGACCTGCCCGA	0.662													17	21					0	0	1	0	0
ALG10	84920	broad.mit.edu	37	12	34179674	34179674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:34179674C>T	uc001rlm.2	+	3	1565	c.1246C>T	c.(1246-1248)CGT>TGT	p.R416C		NM_032834	NP_116223	Q5BKT4	AG10A_HUMAN	asparagine-linked glycosylation 10 homolog	416	Extracellular (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			skin(1)	1	Lung NSC(5;3.82e-05)|Acute lymphoblastic leukemia(23;0.0142)|all_hematologic(23;0.0429)	Lung NSC(34;0.204)|all_lung(34;0.235)				GCTGGAATTTCGTTACTTCAT	0.348													43	78					0	0	1	0	0
ALG10B	144245	broad.mit.edu	37	12	38712071	38712071	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:38712071C>T	uc001rln.3	+	2	319	c.180C>T	c.(178-180)CCC>CCT	p.P60P	ALG10B_uc001rlo.3_Silent_p.P30P|ALG10B_uc010skk.1_5'UTR	NM_001013620	NP_001013642	Q5I7T1	AG10B_HUMAN	asparagine-linked glycosylation 10 homolog B	60	Extracellular (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane|plasma membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			ovary(2)|skin(1)	3	Esophageal squamous(101;0.187)	Lung NSC(34;0.204)|all_lung(34;0.235)				AGTGGGATCCCATGATTACTA	0.418													71	108					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43895991	43895991	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:43895991C>T	uc010skx.1	-	4	831	c.831G>A	c.(829-831)TCG>TCA	p.S277S		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	277	Peptidase M12B.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TTTGCAAATTCGATCCATGAG	0.289													9	7					0	0	1	0	0
SLC38A4	55089	broad.mit.edu	37	12	47160510	47160510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:47160510C>T	uc001rpi.2	-	17	2017	c.1618G>A	c.(1618-1620)GAT>AAT	p.D540N	SLC38A4_uc001rpj.2_Missense_Mutation_p.D540N	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	540	Extracellular (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					TTTGGAGGATCATAAATCCAG	0.323													8	8					0	0	1	0	0
FAM113B	91523	broad.mit.edu	37	12	47630056	47630056	+	Missense_Mutation	SNP	C	T	T	rs141120293		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:47630056C>T	uc001rpn.2	+	4	1941	c.1210C>T	c.(1210-1212)CGT>TGT	p.R404C	FAM113B_uc001rpq.2_Missense_Mutation_p.R404C	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	404	Pro-rich.						hydrolase activity	p.R404C(1)		skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					TGGCAGGTATCGTCCCCGTGG	0.592													13	24					0	0	1	0	0
RAPGEF3	10411	broad.mit.edu	37	12	48132950	48132950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:48132950G>A	uc009zkp.2	-	23	2751	c.2311C>T	c.(2311-2313)CCC>TCC	p.P771S	uc001rpv.2_Intron|RAPGEF3_uc001rpw.2_Missense_Mutation_p.P106S|RAPGEF3_uc001rpx.2_Missense_Mutation_p.P228S|RAPGEF3_uc010sln.1_Missense_Mutation_p.P268S|RAPGEF3_uc001rpy.2_RNA|RAPGEF3_uc009zkq.2_Missense_Mutation_p.P771S|RAPGEF3_uc001rpz.3_Missense_Mutation_p.P813S	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	771					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		GGCATGAAGGGGATGACAGGA	0.393													16	25					0	0	1	0	0
COL2A1	1280	broad.mit.edu	37	12	48391659	48391659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:48391659C>T	uc001rqu.2	-	6	605	c.424G>A	c.(424-426)GAA>AAA	p.E142K	COL2A1_uc001rqv.2_Missense_Mutation_p.E73K	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	142					axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	CTCACTTTTTCACCTTTGTCA	0.542													67	122					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49440517	49440517	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:49440517C>A	uc001rta.3	-	15	4293	c.4293G>T	c.(4291-4293)GAG>GAT	p.E1431D		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	1431	Cys-rich.|PHD-type 4.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGCCACACACCTCACACACAA	0.572			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			3	48					1	1	1	1	0
SPATS2	65244	broad.mit.edu	37	12	49919798	49919798	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:49919798C>T	uc001rud.2	+	14	2387	c.1398C>T	c.(1396-1398)AAC>AAT	p.N466N	SPATS2_uc001rue.2_RNA|SPATS2_uc009zli.1_Silent_p.N466N|SPATS2_uc001ruf.2_Silent_p.N466N|SPATS2_uc001rug.2_Silent_p.N466N	NM_023071	NP_075559	Q86XZ4	SPAS2_HUMAN	spermatogenesis associated, serine-rich 2	466						cytoplasm				breast(1)	1						ACCCCATGAACCAAGGGCGGC	0.498													20	41					0	0	1	0	0
AQP2	359	broad.mit.edu	37	12	50344866	50344866	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:50344866C>T	uc001rvn.2	+	1	343	c.253C>T	c.(253-255)CGA>TGA	p.R85*		NM_000486	NP_000477	P41181	AQP2_HUMAN	aquaporin 2	85	Cytoplasmic (Potential).				cellular response to copper ion|cellular response to mercury ion|excretion	apical plasma membrane|integral to membrane|transport vesicle membrane	glycerol transmembrane transporter activity|water channel activity			ovary(2)	2						CTCCGTTCTCCGAGCCGCCTT	0.667													3	14					0	0	1	0	0
ACCN2	41	broad.mit.edu	37	12	50452571	50452571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:50452571G>A	uc001rvw.2	+	2	251	c.22G>A	c.(22-24)GAG>AAG	p.E8K	ACCN2_uc001rvv.2_Missense_Mutation_p.E8K|ACCN2_uc009zln.2_5'UTR|ACCN2_uc009zlo.2_Missense_Mutation_p.E8K	NM_001095	NP_001086	P78348	ACCN2_HUMAN	amiloride-sensitive cation channel 2, neuronal	8	Cytoplasmic (By similarity).				calcium ion transport|response to pH|signal transduction	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(1)	1					Amiloride(DB00594)	GGCCGAGGAGGAGGAGGTGGG	0.617													21	45					0	0	1	0	0
KRT6C	286887	broad.mit.edu	37	12	52863032	52863032	+	Silent	SNP	G	A	A	rs139360268	byFrequency	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:52863032G>A	uc001sal.3	-	9	1557	c.1509C>T	c.(1507-1509)GTC>GTT	p.V503V		NM_173086	NP_775109	P48668	K2C6C_HUMAN	keratin 6C	503	Tail.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0828)		AGCCACTGCCGACACCGCTGG	0.602													12	22					0	0	1	0	0
KRT74	121391	broad.mit.edu	37	12	52964490	52964490	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:52964490T>C	uc001sap.1	-	5	1019	c.971A>G	c.(970-972)AAG>AGG	p.K324R		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	324	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		GGCCTTGCTCTTCAGGGCGAT	0.602													29	38					0	0	1	0	0
KRT18	3875	broad.mit.edu	37	12	53345628	53345628	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:53345628C>T	uc001sbe.2	+	6	1005	c.936C>T	c.(934-936)TCC>TCT	p.S312S	KRT18_uc009zmn.1_Silent_p.S312S|KRT18_uc001sbf.1_Silent_p.S139S|KRT18_uc001sbg.2_Silent_p.S312S|KRT18_uc009zmo.2_Silent_p.S312S|KRT8_uc009zml.1_5'Flank|KRT8_uc009zmm.1_5'Flank	NM_199187	NP_954657	P05783	K1C18_HUMAN	keratin 18	312	Interaction with DNAJB6.|Coil 2.|Rod.|Necessary for interaction with PNN.			S -> R (in Ref. 8; CAA31369).	anatomical structure morphogenesis|cell cycle|Golgi to plasma membrane CFTR protein transport|interspecies interaction between organisms|negative regulation of apoptosis	centriolar satellite|keratin filament|perinuclear region of cytoplasm	protein binding|structural molecule activity			skin(1)	1						ACCTGGACTCCATGAGAAATC	0.552													19	32					0	0	1	0	0
AMHR2	269	broad.mit.edu	37	12	53823400	53823400	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:53823400C>T	uc001scx.1	+	8	1209	c.1131C>T	c.(1129-1131)GCC>GCT	p.A377A	AMHR2_uc009zmy.1_Silent_p.A377A	NM_020547	NP_065434	Q16671	AMHR2_HUMAN	anti-Mullerian hormone receptor, type II isoform	377	Cytoplasmic (Potential).|Protein kinase.				Mullerian duct regression		ATP binding|hormone binding|metal ion binding			ovary(1)|skin(1)	2					Adenosine triphosphate(DB00171)	GCCCAGCTGCCATCATGGAAG	0.562									Persistant_Mullerian_Duct_Syndrome_(type_I_and_II)				8	13					0	0	1	0	0
OR6C68	403284	broad.mit.edu	37	12	55887015	55887015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:55887015C>T	uc010spo.1	+	1	869	c.869C>T	c.(868-870)TCT>TTT	p.S290F		NM_001005519	NP_001005519	A6NDL8	O6C68_HUMAN	olfactory receptor, family 6, subfamily C,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ATGTTGAATTCTTTCATATAT	0.328													16	47					0	0	1	0	0
ORMDL2	29095	broad.mit.edu	37	12	56213193	56213193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:56213193G>A	uc001shw.1	+	3	334	c.242G>A	c.(241-243)CGG>CAG	p.R81Q	SARNP_uc009zoa.2_5'Flank|SARNP_uc001shs.3_5'Flank|SARNP_uc001sht.2_5'Flank|DNAJC14_uc001shu.1_Intron|SARNP_uc001shv.3_5'Flank	NM_014182	NP_054901	Q53FV1	ORML2_HUMAN	ORMDL2	81					ceramide metabolic process	endoplasmic reticulum membrane|integral to membrane					0						GGAAAGGCTCGGCTACTGACA	0.537													59	96					0	0	1	0	0
SLC39A5	283375	broad.mit.edu	37	12	56625222	56625222	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:56625222C>T	uc010sqj.1	+	4	421	c.164C>T	c.(163-165)GCA>GTA	p.A55V	SLC39A5_uc010sqi.1_Intron|SLC39A5_uc010sqk.1_Missense_Mutation_p.A55V	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	55	Extracellular (By similarity).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						ACGCTGACTGCAGGGGGCTTG	0.662													22	50					0	0	1	0	0
TIMELESS	8914	broad.mit.edu	37	12	56823952	56823952	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:56823952G>A	uc001slf.2	-	10	1191	c.1023C>T	c.(1021-1023)TTC>TTT	p.F341F	TIMELESS_uc001slg.2_Silent_p.F340F	NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	341					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						AGTCTCTGAGGAAGAGCCTCA	0.517													17	28					0	0	1	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57868238	57868238	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:57868238C>T	uc001sod.2	-	18	2214	c.2021G>A	c.(2020-2022)GGG>GAG	p.G674E	ARHGAP9_uc001sny.2_RNA|ARHGAP9_uc001snz.2_Missense_Mutation_p.G400E|ARHGAP9_uc001soa.2_Missense_Mutation_p.G273E|ARHGAP9_uc001sob.2_Missense_Mutation_p.G584E|ARHGAP9_uc001soc.2_Missense_Mutation_p.G584E|ARHGAP9_uc001soe.1_Missense_Mutation_p.G663E	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	603	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			CACATACCTCCCATCGGAGGT	0.512													15	21					0	0	1	0	0
GEFT	115557	broad.mit.edu	37	12	58009767	58009767	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:58009767C>T	uc001spb.2	+	13	1847	c.1387C>T	c.(1387-1389)CAG>TAG	p.Q463*	GEFT_uc009zpy.2_Nonsense_Mutation_p.Q502*|GEFT_uc001spa.2_Nonsense_Mutation_p.Q357*|uc001spc.2_Intron|GEFT_uc001spd.2_Nonsense_Mutation_p.Q168*	NM_182947	NP_891992	Q86VW2	ARHGP_HUMAN	RhoA/RAC/CDC42 exchange factor isoform 1	463	PH.				regulation of Rho protein signal transduction	cytosol|plasma membrane|sarcomere	Rho guanyl-nucleotide exchange factor activity				0	Melanoma(17;0.122)					GCATGTGGCTCAGATCTTGGA	0.572													52	92					0	0	1	0	0
HELB	92797	broad.mit.edu	37	12	66703764	66703764	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:66703764C>T	uc001sti.2	+	4	1084	c.1056C>T	c.(1054-1056)TTC>TTT	p.F352F	HELB_uc010ssz.1_RNA|HELB_uc009zqt.1_RNA	NM_033647	NP_387467	Q8NG08	HELB_HUMAN	helicase (DNA) B	352					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		CCTGTGTCTTCCCTTATGACC	0.413													74	116					0	0	1	0	0
CAND1	55832	broad.mit.edu	37	12	67699378	67699378	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:67699378T>A	uc001stn.2	+	10	2367	c.1930T>A	c.(1930-1932)TTG>ATG	p.L644M	CAND1_uc001sto.2_Missense_Mutation_p.L154M	NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	644					cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		GAAGATAGATTTGAGGCCTGT	0.403													33	53					0	0	1	0	0
BEST3	144453	broad.mit.edu	37	12	70087518	70087518	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:70087518G>A	uc001svg.2	-	4	644	c.417C>T	c.(415-417)ATC>ATT	p.I139I	BEST3_uc001svd.1_Silent_p.I139I|BEST3_uc001sve.1_RNA|BEST3_uc010stm.1_Silent_p.I33I|BEST3_uc001svh.2_5'UTR|BEST3_uc001svi.1_RNA	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	139	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			CCGAGCGAAAGATGAGCAGGG	0.517													16	51					0	0	1	0	0
OSBPL8	114882	broad.mit.edu	37	12	76791674	76791674	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:76791674G>A	uc001sye.1	-	8	952	c.472C>T	c.(472-474)CGT>TGT	p.R158C	OSBPL8_uc001syf.1_Missense_Mutation_p.R116C|OSBPL8_uc001syg.1_Missense_Mutation_p.R116C|OSBPL8_uc001syh.1_Missense_Mutation_p.R133C	NM_020841	NP_065892	Q9BZF1	OSBL8_HUMAN	oxysterol-binding protein-like protein 8 isoform	158	PH.				lipid transport		lipid binding			ovary(1)	1						AGAGTACCACGAATCTACAGA	0.353													16	20					0	0	1	0	0
MIR1252	100302136	broad.mit.edu	37	12	79813092	79813092	+	RNA	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:79813092C>T	hsa-mir-1252|MI0006434	+			c.56C>T			SYT1_uc001sys.2_Intron|SYT1_uc001syt.2_Intron|SYT1_uc001syu.2_Intron|SYT1_uc001syv.2_Intron																	0						AGCTTAATTTCCTTTTTTCTA	0.343													3	6					0	0	1	0	0
C12orf50	160419	broad.mit.edu	37	12	88376927	88376927	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:88376927C>T	uc001tam.1	-	12	1340	c.1172G>A	c.(1171-1173)CGA>CAA	p.R391Q		NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	391										skin(2)|ovary(1)	3						AAAAGGAATTCGTTTTCGCCA	0.264													23	43					0	0	1	0	0
SLC5A8	160728	broad.mit.edu	37	12	101561890	101561890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:101561890G>A	uc001thz.3	-	11	1694	c.1304C>T	c.(1303-1305)CCC>CTC	p.P435L		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	435	Helical; (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						GTTGGCAAAGGGAACCAAAAT	0.398													4	8					0	0	1	0	0
SLC5A8	160728	broad.mit.edu	37	12	101576622	101576622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:101576622G>A	uc001thz.3	-	9	1514	c.1124C>T	c.(1123-1125)TCG>TTG	p.S375L		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	375	Cytoplasmic (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						TTCTGAGAGCGATCTGAAGTA	0.368													33	53					0	0	1	0	0
TDG	6996	broad.mit.edu	37	12	104370810	104370810	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:104370810C>T	uc001tkg.2	+	2	361	c.138C>T	c.(136-138)GCC>GCT	p.A46A	TDG_uc010swh.1_Silent_p.A46A|TDG_uc009zuk.2_Silent_p.A42A|TDG_uc010swi.1_Intron|TDG_uc010swj.1_5'Flank	NM_003211	NP_003202	Q13569	TDG_HUMAN	thymine-DNA glycosylase	46					depyrimidination|mismatch repair	nucleoplasm	damaged DNA binding|mismatched DNA binding|protein binding|pyrimidine-specific mismatch base pair DNA N-glycosylase activity			ovary(3)|lung(3)	6				BRCA - Breast invasive adenocarcinoma(302;0.00114)		AAGTTCCAGCCCCAGCTCCTG	0.443								BER_DNA_glycosylases					13	39					0	0	1	0	0
BTBD11	121551	broad.mit.edu	37	12	108011178	108011178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:108011178G>A	uc001tmk.1	+	9	2717	c.2196G>A	c.(2194-2196)ATG>ATA	p.M732I	BTBD11_uc009zut.1_Intron|BTBD11_uc001tmj.2_Missense_Mutation_p.M732I|BTBD11_uc001tml.1_Missense_Mutation_p.M269I	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	732	ANK 4.					integral to membrane	DNA binding			skin(2)|ovary(1)	3						AGGGTGATATGAACTCTTTCA	0.458													20	38					0	0	1	0	0
BTBD11	121551	broad.mit.edu	37	12	108034182	108034182	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:108034182C>T	uc001tmk.1	+	13	3353	c.2832C>T	c.(2830-2832)GCC>GCT	p.A944A	BTBD11_uc001tmj.2_Silent_p.A944A|BTBD11_uc001tml.1_Silent_p.A481A|BTBD11_uc001tmm.1_Silent_p.A23A	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	944	BTB.					integral to membrane	DNA binding			skin(2)|ovary(1)	3						TATTTACAGCCTCTCCAAGGT	0.373													20	36					0	0	1	0	0
RAD9B	144715	broad.mit.edu	37	12	110969391	110969391	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:110969391A>G	uc001trf.3	+	12	1385	c.1247A>G	c.(1246-1248)AAA>AGA	p.K416R	RAD9B_uc001trg.3_3'UTR|RAD9B_uc010sya.1_Missense_Mutation_p.K311E|RAD9B_uc001tre.3_3'UTR|RAD9B_uc001trd.3_3'UTR	NM_152442	NP_689655	Q6WBX8	RAD9B_HUMAN	RAD9 homolog B	413					cell cycle checkpoint|DNA repair|DNA replication	nucleoplasm	protein binding			pancreas(1)|skin(1)	2						TGCTGCAGGAAAGAATTTAAT	0.338													10	17					0	0	1	0	0
TCTN1	79600	broad.mit.edu	37	12	111066588	111066588	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:111066588C>T	uc009zvs.2	+	4	597	c.489C>T	c.(487-489)TCC>TCT	p.S163S	TCTN1_uc010syb.1_Silent_p.S163S|TCTN1_uc009zvr.1_RNA|TCTN1_uc001trl.2_RNA|TCTN1_uc001trm.2_Silent_p.S103S|TCTN1_uc010syc.1_RNA|TCTN1_uc001tro.2_RNA|TCTN1_uc001trp.3_Silent_p.S163S|TCTN1_uc001trn.3_Silent_p.S163S|TCTN1_uc001tri.2_Silent_p.S107S|TCTN1_uc001trj.1_Silent_p.S107S|TCTN1_uc001trk.3_RNA|HVCN1_uc001trq.1_Intron	NM_001082537	NP_001076006	Q2MV58	TECT1_HUMAN	tectonic family member 1 isoform 2	163					multicellular organismal development	extracellular region					0						CTGCATTATCCTTTATTAATC	0.259													13	19					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111785930	111785930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:111785930C>T	uc001tsa.1	+	22	4415	c.4262C>T	c.(4261-4263)TCC>TTC	p.S1421F		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1421	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GCTCCCATCTCCCCATCCCCA	0.662													23	40					0	0	1	0	0
ATXN2	6311	broad.mit.edu	37	12	111948322	111948322	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:111948322G>A	uc001tsj.2	-	12	2265	c.2103C>T	c.(2101-2103)ACC>ACT	p.T701T	ATXN2_uc001tsh.2_Silent_p.T436T|ATXN2_uc001tsi.2_Silent_p.T412T|ATXN2_uc001tsk.2_RNA	NM_002973	NP_002964	Q99700	ATX2_HUMAN	ataxin 2	701	Pro-rich.				cell death|cytoplasmic mRNA processing body assembly|regulation of translation|RNA metabolic process|RNA transport|stress granule assembly	nucleus|perinuclear region of cytoplasm|polysome|stress granule|trans-Golgi network	protein C-terminus binding|RNA binding			ovary(1)|breast(1)	2						GCCCACTGGGGGTATTTCCAA	0.458													90	197					0	0	1	0	0
RPH3A	22895	broad.mit.edu	37	12	113307728	113307728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:113307728G>A	uc010syl.1	+	10	1042	c.680G>A	c.(679-681)GGA>GAA	p.G227E	RPH3A_uc001ttz.2_Missense_Mutation_p.G227E|RPH3A_uc001tty.2_Missense_Mutation_p.G223E|RPH3A_uc009zwe.1_Missense_Mutation_p.G223E|RPH3A_uc010sym.1_Missense_Mutation_p.G178E|RPH3A_uc001tua.2_5'UTR	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	227	Pro-rich.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		CCCGGGCGAGGAAACTATGGG	0.577													23	59					0	0	1	0	0
RASAL1	8437	broad.mit.edu	37	12	113543643	113543643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:113543643C>T	uc001tum.1	-	17	1996	c.1703G>A	c.(1702-1704)CGA>CAA	p.R568Q	RASAL1_uc010syp.1_Missense_Mutation_p.R569Q|RASAL1_uc001tul.2_Missense_Mutation_p.R568Q|RASAL1_uc001tun.1_Missense_Mutation_p.R570Q|RASAL1_uc010syq.1_Missense_Mutation_p.R569Q|RASAL1_uc001tuo.3_Missense_Mutation_p.R569Q	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	568	PH.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						ATAGCCTTCTCGAACAATGGC	0.637													16	45					0	0	1	0	0
SLC24A6	80024	broad.mit.edu	37	12	113758480	113758480	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:113758480G>A	uc001tvc.2	-	6	642	c.432C>T	c.(430-432)TTC>TTT	p.F144F	SLC24A6_uc001tuz.2_5'Flank|SLC24A6_uc001tva.2_RNA|SLC24A6_uc001tvb.2_5'UTR	NM_024959	NP_079235	Q6J4K2	NCKX6_HUMAN	solute carrier family 24 member 6 precursor	144	Helical; Name=2; (Potential).				response to stimulus|sodium ion transport	integral to membrane|plasma membrane	calcium:cation antiporter activity			central_nervous_system(1)	1						CAAATGCCAGGAAGGTGACGC	0.637													4	17					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117718539	117718539	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:117718539C>T	uc001twm.1	-	8	2201	c.1515G>A	c.(1513-1515)CAG>CAA	p.Q505Q		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	505					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CCTCTGTGAACTGCACATTGG	0.592													19	35					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120582728	120582728	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:120582728C>T	uc001txo.2	-	40	5167	c.5154G>A	c.(5152-5154)CAG>CAA	p.Q1718Q		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1718					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGGCCTTACCCTGTGCAGCGC	0.592													18	40					0	0	1	0	0
LRRC43	254050	broad.mit.edu	37	12	122676082	122676082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:122676082G>A	uc009zxm.2	+	6	1082	c.1057G>A	c.(1057-1059)GAA>AAA	p.E353K	LRRC43_uc001ubw.3_Missense_Mutation_p.E168K|LRRC43_uc009zxn.2_Missense_Mutation_p.E114K	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	353	Glu-rich.										0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		TGAAGAAGGCGAAATGAATGA	0.552											OREG0022219	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	57					0	0	1	0	0
GPR109B	8843	broad.mit.edu	37	12	123200607	123200607	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:123200607G>A	uc001ucy.3	-	1	833	c.678C>T	c.(676-678)ATC>ATT	p.I226I	GPR81_uc001ucw.1_Intron	NM_006018	NP_006009	P49019	HCAR3_HUMAN	G protein-coupled receptor 109B	226	Cytoplasmic (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	TGGCTCTCTTGATCTTGGCAT	0.552													15	23					0	0	1	0	0
ATP6V0A2	23545	broad.mit.edu	37	12	124228404	124228404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:124228404C>T	uc001ufr.2	+	10	1359	c.1111C>T	c.(1111-1113)CGC>TGC	p.R371C		NM_012463	NP_036595	Q9Y487	VPP2_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	371	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|immune response|insulin receptor signaling pathway|transferrin transport	endosome membrane|integral to membrane|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000224)|Epithelial(86;0.000625)|all cancers(50;0.00775)		CACTCGGATCCGCACCAACAA	0.433													54	104					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124315112	124315112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:124315112G>A	uc001uft.3	+	25	4082	c.4057G>A	c.(4057-4059)GAA>AAA	p.E1353K		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1353	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AGAACTTATGGAAAAAACGTC	0.363													14	26					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834659	125834659	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:125834659G>A	uc001uhe.1	+	2	722	c.714G>A	c.(712-714)TGG>TGA	p.W238*		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	238	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		AAGGCAAGTGGGAGAACAATA	0.597													17	32					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126137025	126137025	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:126137025G>A	uc001uhe.1	+	8	1946	c.1938G>A	c.(1936-1938)AAG>AAA	p.K646K	TMEM132B_uc001uhf.1_Silent_p.K158K	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	646	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TGGCTGAGAAGACGGTGATTG	0.557													11	19					0	0	1	0	0
SFRS8	6433	broad.mit.edu	37	12	132211580	132211580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:132211580C>T	uc001uja.1	+	6	1068	c.928C>T	c.(928-930)CTT>TTT	p.L310F	SFRS8_uc010tbn.1_Missense_Mutation_p.L310F|SFRS8_uc001ujb.1_Missense_Mutation_p.L103F|SFRS8_uc001uiz.1_Missense_Mutation_p.L184F	NM_004592	NP_004583	Q12872	SFSWA_HUMAN	splicing factor, arginine/serine-rich 8	310					mRNA splice site selection|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|RNA binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.44e-07)|Epithelial(86;2.94e-06)|all cancers(50;4.82e-05)		GTGTAACCGCCTTGAAGAGCT	0.378													15	28					0	0	1	0	0
POLE	5426	broad.mit.edu	37	12	133218418	133218418	+	Silent	SNP	A	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr12:133218418A>T	uc001uks.1	-	39	5237	c.5193T>A	c.(5191-5193)CTT>CTA	p.L1731L	POLE_uc001ukq.1_5'Flank|POLE_uc001ukr.1_Silent_p.L535L|POLE_uc010tbq.1_RNA	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	1731					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		CCAGGTTCTGAAGGTCCAGCT	0.617								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					25	54					0	0	1	0	0
TUBA3C	7278	broad.mit.edu	37	13	19751676	19751676	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr13:19751676G>A	uc009zzj.2	-	4	496	c.447C>T	c.(445-447)TTC>TTT	p.F149F		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	149					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		GCAGAGATGCGAACCCAGAGC	0.567													69	56					0	0	1	0	0
GJB6	10804	broad.mit.edu	37	13	20796893	20796893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr13:20796893C>T	uc001umz.3	-	3	1280	c.727G>A	c.(727-729)GAA>AAA	p.E243K	GJB6_uc001unc.3_Missense_Mutation_p.E243K|GJB6_uc001una.3_Missense_Mutation_p.E243K|GJB6_uc001und.3_Missense_Mutation_p.E243K|GJB6_uc001unb.3_Missense_Mutation_p.E243K	NM_006783	NP_006774	O95452	CXB6_HUMAN	gap junction protein, beta 6	243	Cytoplasmic (Potential).				cell communication|sensory perception of sound	connexon complex|integral to membrane|intracellular membrane-bounded organelle				ovary(1)	1		all_cancers(29;2.04e-22)|all_epithelial(30;1.19e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;2.17e-05)|Epithelial(112;0.00075)|OV - Ovarian serous cystadenocarcinoma(117;0.00978)|Lung(94;0.0238)|GBM - Glioblastoma multiforme(144;0.0323)|LUSC - Lung squamous cell carcinoma(192;0.0744)		TCATTCATTTCATTCTGCTTA	0.413													86	97					0	0	1	0	0
GJB6	10804	broad.mit.edu	37	13	20797593	20797593	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr13:20797593G>A	uc001umz.3	-	3	580	c.27C>T	c.(25-27)TTC>TTT	p.F9F	GJB6_uc001unc.3_Silent_p.F9F|GJB6_uc001una.3_Silent_p.F9F|GJB6_uc001und.3_Silent_p.F9F|GJB6_uc001unb.3_Silent_p.F9F	NM_006783	NP_006774	O95452	CXB6_HUMAN	gap junction protein, beta 6	9	Cytoplasmic (Potential).				cell communication|sensory perception of sound	connexon complex|integral to membrane|intracellular membrane-bounded organelle				ovary(1)	1		all_cancers(29;2.04e-22)|all_epithelial(30;1.19e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;2.17e-05)|Epithelial(112;0.00075)|OV - Ovarian serous cystadenocarcinoma(117;0.00978)|Lung(94;0.0238)|GBM - Glioblastoma multiforme(144;0.0323)|LUSC - Lung squamous cell carcinoma(192;0.0744)		CACCCCCGATGAAAGTGTGCA	0.507													52	150					0	0	1	0	0
XPO4	64328	broad.mit.edu	37	13	21396374	21396374	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr13:21396374G>A	uc001unq.3	-	8	931	c.895C>T	c.(895-897)CTT>TTT	p.L299F		NM_022459	NP_071904	Q9C0E2	XPO4_HUMAN	exportin 4	299					protein transport	cytoplasm|nucleus	protein binding			large_intestine(1)|ovary(1)|kidney(1)	3		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		AACTGGGCAAGGCACTGCAGA	0.373													54	48					0	0	1	0	0
C1QTNF9	338872	broad.mit.edu	37	13	24893010	24893010	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr13:24893010G>A	uc001upj.2	+	3	282	c.221G>A	c.(220-222)GGA>GAA	p.G74E	C1QTNF9_uc001upe.2_RNA	NM_178540	NP_848635	P0C862	C1T9A_HUMAN	C1q and tumor necrosis factor related protein 9	74	Collagen-like 1.					collagen	hormone activity				0		all_cancers(29;3.55e-20)|all_epithelial(30;4.25e-17)|all_lung(29;1.04e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.00565)|Epithelial(112;0.027)|OV - Ovarian serous cystadenocarcinoma(117;0.115)|Lung(94;0.159)		GGAGAGAAGGGAGAACGAGGT	0.453													44	117					0	0	1	0	0
ATP12A	479	broad.mit.edu	37	13	25262537	25262537	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr13:25262537G>A	uc001upp.2	+	4	496	c.309G>A	c.(307-309)GAG>GAA	p.E103E	ATP12A_uc010aaa.2_Silent_p.E103E	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	103	Helical; (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	AGACGCCTGAGATCGTCAAGT	0.597													223	180					0	0	1	0	0
RNF17	56163	broad.mit.edu	37	13	25404711	25404711	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr13:25404711G>A	uc001upr.2	+	17	2376	c.2335G>A	c.(2335-2337)GAT>AAT	p.D779N	RNF17_uc010tdd.1_Missense_Mutation_p.D638N|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.D779N|RNF17_uc001ups.2_Missense_Mutation_p.D718N|RNF17_uc010aac.2_5'UTR	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	779	Tudor 1.				multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TAAAATAAAGGATGAGTTTCT	0.328													59	56					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	28908228	28908228	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr13:28908228G>A	uc001usb.3	-	18	2812	c.2527C>T	c.(2527-2529)CAA>TAA	p.Q843*	FLT1_uc001usa.3_Nonsense_Mutation_p.Q61*	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	843	Cytoplasmic (Potential).|Protein kinase.				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	GCTGATGCTTGAACCACTTTT	0.438													135	121					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	28963961	28963961	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr13:28963961G>A	uc001usb.3	-	13	2226	c.1941C>T	c.(1939-1941)ATC>ATT	p.I647I	FLT1_uc010aar.1_Silent_p.I647I|FLT1_uc001usc.3_Silent_p.I647I|FLT1_uc010aas.1_RNA|FLT1_uc010aat.1_Silent_p.I130I	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	647	Ig-like C2-type 6.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	TCTTCTGGAGGATTTCTTCCC	0.423													34	119					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29599687	29599687	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr13:29599687G>A	uc001usl.3	+	1	940	c.882G>A	c.(880-882)CTG>CTA	p.L294L		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	284						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						AGCCTGCTCTGAATTTGACTT	0.517													9	23					0	0	1	0	0
USPL1	10208	broad.mit.edu	37	13	31233414	31233414	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr13:31233414C>T	uc001utc.2	+	9	3632	c.3200C>T	c.(3199-3201)TCC>TTC	p.S1067F	USPL1_uc001utd.2_Missense_Mutation_p.S738F|USPL1_uc001ute.1_Missense_Mutation_p.S738F	NM_005800	NP_005791	Q5W0Q7	USPL1_HUMAN	ubiquitin specific peptidase like 1	1067					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			pancreas(2)|skin(1)	3		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0306)|Epithelial(112;0.131)|OV - Ovarian serous cystadenocarcinoma(117;0.134)		GAGTTTTTTTCCTCCTCAGCA	0.353													26	72					0	0	1	0	0
HS6ST3	266722	broad.mit.edu	37	13	97484819	97484819	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr13:97484819G>A	uc001vmw.2	+	2	807	c.783G>A	c.(781-783)GGG>GGA	p.G261G		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	261	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					TCCAGAGAGGGGCCACTTGGA	0.498													9	28					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110807629	110807629	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr13:110807629C>T	uc001vqw.3	-	50	4877	c.4755_splice	c.e50+1	p.M1585_splice	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein						angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CAGACACTTACCATCACAAAA	0.607													19	18					0	0	1	0	0
OR4L1	122742	broad.mit.edu	37	14	20528249	20528249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:20528249G>A	uc001vwn.1	+	1	46	c.46G>A	c.(46-48)GGA>AGA	p.G16R		NM_001004717	NP_001004717	Q8NH43	OR4L1_HUMAN	olfactory receptor, family 4, subfamily L,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		TATTTTACTAGGATTTTTTGG	0.343													24	55					0	0	1	0	0
OR4K17	390436	broad.mit.edu	37	14	20586509	20586509	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:20586509C>T	uc001vwo.1	+	1	944	c.944C>T	c.(943-945)CCA>CTA	p.P315L		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		ATCTTGAATCCAATTATCTAT	0.348													8	13					0	0	1	0	0
OR11G2	390439	broad.mit.edu	37	14	20665675	20665675	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:20665675G>A	uc010tlb.1	+	1	181	c.181G>A	c.(181-183)GGG>AGG	p.G61R		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	61	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		CCCCAGGGAGGGGCAGATCCT	0.527													17	32					0	0	1	0	0
OR11G2	390439	broad.mit.edu	37	14	20665886	20665886	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:20665886C>T	uc010tlb.1	+	1	392	c.392C>T	c.(391-393)TCG>TTG	p.S131L		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	131	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		AAGATCATCTCGTTCTCTGGC	0.483													11	16					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	22090620	22090620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:22090620C>T	uc001wbi.2	+	2	272	c.259C>T	c.(259-261)CGT>TGT	p.R87C						SubName: Full=Putative uncharacterized protein ENSP00000374929;																		GGAGACAGGTCGTTTTTCTTC	0.478													31	57					0	0	1	0	0
CDH24	64403	broad.mit.edu	37	14	23518256	23518256	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:23518256G>A	uc001wil.2	-	12	2200	c.1940C>T	c.(1939-1941)ACC>ATC	p.T647I	CDH24_uc001wik.3_RNA|CDH24_uc010akf.2_Missense_Mutation_p.T609I	NM_022478	NP_071923	Q86UP0	CAD24_HUMAN	cadherin-like 24 isoform 1	647	Helical; (Potential).				adherens junction organization|cell junction assembly|cell-cell adhesion|homophilic cell adhesion	cell-cell junction|cell-cell junction|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|delta-catenin binding			central_nervous_system(1)	1	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00654)		ACCCACACAGGTGATGATGGC	0.642													6	38					0	0	1	0	0
ACIN1	22985	broad.mit.edu	37	14	23530677	23530677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:23530677C>T	uc001wit.3	-	17	3756	c.3428G>A	c.(3427-3429)CGG>CAG	p.R1143Q	ACIN1_uc001wio.3_RNA|ACIN1_uc001wip.3_Missense_Mutation_p.R385Q|ACIN1_uc001wiq.3_Missense_Mutation_p.R385Q|ACIN1_uc001wir.3_Missense_Mutation_p.R416Q|ACIN1_uc001wis.3_Missense_Mutation_p.R824Q|ACIN1_uc010akg.2_Missense_Mutation_p.R1130Q	NM_014977	NP_055792	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	1143	Arg/Asp/Glu/Lys-rich.				apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			ovary(2)|large_intestine(1)|skin(1)	4	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		CCACTGTTCCCGCACTGCCCG	0.682													66	96					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23883076	23883076	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:23883076G>A	uc001wjx.2	-	39	5788	c.5682C>T	c.(5680-5682)TCC>TCT	p.S1894S		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1894	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TGCGGAACTTGGACAGGTTGG	0.637													34	66					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23884344	23884344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:23884344C>T	uc001wjx.2	-	37	5525	c.5419G>A	c.(5419-5421)GGC>AGC	p.G1807S		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1807	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TTCTTGCCGCCCTTGAGGGCG	0.622													35	51					0	0	1	0	0
RIPK3	11035	broad.mit.edu	37	14	24805566	24805566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:24805566C>T	uc001wpb.2	-	10	1582	c.1372G>A	c.(1372-1374)GTG>ATG	p.V458M	ADCY4_uc001wov.2_5'Flank|ADCY4_uc001wow.2_5'Flank|ADCY4_uc010toh.1_5'Flank|ADCY4_uc001wox.2_5'Flank|ADCY4_uc001woy.2_5'Flank|ADCY4_uc001woz.3_5'Flank|RIPK3_uc001wpa.2_Missense_Mutation_p.V258M|RIPK3_uc010alq.2_RNA|RIPK3_uc010toi.1_Missense_Mutation_p.V237M	NM_006871	NP_006862	Q9Y572	RIPK3_HUMAN	receptor-interacting serine-threonine kinase 3	458	RIP homotypic interaction motif (RHIM).				apoptosis|induction of apoptosis by extracellular signals	cytoplasm	ATP binding|protein binding|transcription coactivator activity			central_nervous_system(2)|ovary(1)|lung(1)	4				GBM - Glioblastoma multiforme(265;0.0181)		CCAACTTGCACCCCAGAGCAG	0.547													28	64					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24878920	24878920	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:24878920C>T	uc001wpf.3	+	4	2238	c.1920C>T	c.(1918-1920)CCC>CCT	p.P640P		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	640					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						CTGCAGGTCCCAAAACACCCA	0.527													5	8					0	0	1	0	0
AKAP6	9472	broad.mit.edu	37	14	33291018	33291018	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:33291018C>T	uc001wrq.2	+	13	4169	c.3999C>T	c.(3997-3999)ACC>ACT	p.T1333T		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1333					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TTTCATCTACCAAATCTTTGC	0.428													9	20					0	0	1	0	0
FKBP3	2287	broad.mit.edu	37	14	45603623	45603623	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:45603623C>T	uc010tqf.1	-	1	110	c.37G>A	c.(37-39)GAG>AAG	p.E13K	FANCM_uc001wwc.2_5'Flank|FANCM_uc001wwd.3_5'Flank|FANCM_uc010anf.2_5'Flank	NM_002013	NP_002004	Q00688	FKBP3_HUMAN	FK506 binding protein 3, 25kDa	13					protein folding	membrane|nucleus	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|receptor activity				0						CGCAGCTGCTCCACGGTCCAC	0.662													23	41					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63174922	63174922	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:63174922C>T	uc001xfx.2	-	11	2322	c.2271G>A	c.(2269-2271)CAG>CAA	p.Q757Q	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	757	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TGGGAGTAATCTGTGACACAG	0.542													11	23					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64488725	64488725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:64488725C>T	uc001xgm.2	+	37	5733	c.5503C>T	c.(5503-5505)CAC>TAC	p.H1835Y	SYNE2_uc001xgl.2_Missense_Mutation_p.H1835Y	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	1835	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TTTGCAAGATCACTTTTCTAA	0.323													21	48					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65246619	65246619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:65246619C>T	uc001xht.2	-	20	4351	c.4297G>A	c.(4297-4299)GAG>AAG	p.E1433K	SPTB_uc001xhr.2_Missense_Mutation_p.E1433K|SPTB_uc001xhs.2_Missense_Mutation_p.E1433K|SPTB_uc001xhu.2_Missense_Mutation_p.E1433K|SPTB_uc010aqi.2_Missense_Mutation_p.E94K	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1433	Spectrin 11.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CCCAGCTCCTCTTTTCGCACA	0.498													38	108					0	0	1	0	0
SMOC1	64093	broad.mit.edu	37	14	70420239	70420239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:70420239C>T	uc001xls.1	+	3	621	c.368C>T	c.(367-369)TCC>TTC	p.S123F	SMOC1_uc001xlt.1_Missense_Mutation_p.S123F	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	123	Thyroglobulin type-1 1.				cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		GAGGATGGCTCCTTTACCCAG	0.632													13	31					0	0	1	0	0
SMOC1	64093	broad.mit.edu	37	14	70477663	70477663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:70477663G>A	uc001xls.1	+	8	1110	c.857G>A	c.(856-858)CGC>CAC	p.R286H	SMOC1_uc001xlt.1_Missense_Mutation_p.R286H	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	286	Thyroglobulin type-1 2.				cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		ACCTCCACACGGTAAGCCCCC	0.617													14	23					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70518819	70518819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:70518819C>T	uc001xly.2	-	5	2673	c.1919G>A	c.(1918-1920)AGG>AAG	p.R640K	SLC8A3_uc001xlu.2_5'UTR|SLC8A3_uc001xlv.2_Missense_Mutation_p.R11K|SLC8A3_uc001xlw.2_Missense_Mutation_p.R637K|SLC8A3_uc001xlx.2_Missense_Mutation_p.R638K|SLC8A3_uc001xlz.2_Missense_Mutation_p.R634K|SLC8A3_uc010ara.2_RNA|SLC8A3_uc001xma.2_5'UTR	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	640	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		AGTCAGCTTCCTGTCTGTCAC	0.468													43	53					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634325	70634325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:70634325C>T	uc001xly.2	-	2	1569	c.815G>A	c.(814-816)GGA>GAA	p.G272E	SLC8A3_uc001xlw.2_Missense_Mutation_p.G272E|SLC8A3_uc001xlx.2_Missense_Mutation_p.G272E|SLC8A3_uc001xlz.2_Missense_Mutation_p.G272E|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	272	Calmodulin-binding (By similarity).|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TATGATAATTCCTCGGTGTTT	0.468													17	18					0	0	1	0	0
ADAM21	8747	broad.mit.edu	37	14	70925420	70925420	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:70925420G>A	uc001xmd.2	+	1	1204	c.1204G>A	c.(1204-1206)GAA>AAA	p.E402K		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	402	Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		AAGATTGGGGGAAATCTTTAT	0.458													28	51					0	0	1	0	0
MAP3K9	4293	broad.mit.edu	37	14	71206851	71206851	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:71206851G>T	uc001xmm.2	-	7	1598	c.1598C>A	c.(1597-1599)TCC>TAC	p.S533Y	MAP3K9_uc010ttk.1_Missense_Mutation_p.S270Y|MAP3K9_uc001xmk.2_Missense_Mutation_p.S227Y|MAP3K9_uc001xml.2_Missense_Mutation_p.S533Y	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	533				KLKDGNRISLPSDFQHKFTVQASPT -> AQPVLPFPHGHS RCPGGTGSSWGGQ (in Ref. 4).	activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		CATGGTAGGGGAGGCCTGCAC	0.463													19	32					2.54575e-18	2.5669e-18	1	1	0
ZFYVE1	53349	broad.mit.edu	37	14	73490925	73490925	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:73490925T>A	uc001xnm.2	-	2	932	c.292A>T	c.(292-294)AAC>TAC	p.N98Y	ZFYVE1_uc010arj.2_Missense_Mutation_p.N98Y	NM_021260	NP_067083	Q9HBF4	ZFYV1_HUMAN	zinc finger, FYVE domain containing 1 isoform 1	98						endoplasmic reticulum|Golgi stack|perinuclear region of cytoplasm	1-phosphatidylinositol binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|zinc ion binding			skin(1)	1		all_lung(585;1.33e-09)		OV - Ovarian serous cystadenocarcinoma(108;1.6e-46)|BRCA - Breast invasive adenocarcinoma(234;0.00349)		AGGCACAAGTTAATTTTGCAG	0.507													97	157					0	0	1	0	0
C14orf166B	145497	broad.mit.edu	37	14	77297636	77297636	+	Missense_Mutation	SNP	G	A	A	rs138111283	by1000genomes	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:77297636G>A	uc001xsx.2	+	3	422	c.308G>A	c.(307-309)CGG>CAG	p.R103Q	C14orf166B_uc010asn.1_5'UTR|C14orf166B_uc001xsw.2_RNA|C14orf166B_uc010aso.1_RNA|C14orf166B_uc010tvg.1_RNA|C14orf166B_uc010tvh.1_RNA	NM_194287	NP_919263	Q0VAA2	CN16B_HUMAN	hypothetical protein LOC145497	103											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0306)		TACTTCATTCGGAACATGGAG	0.537													21	38					0	0	1	0	0
C14orf174	161394	broad.mit.edu	37	14	77844382	77844382	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:77844382G>A	uc001xtq.1	+	1	621	c.621G>A	c.(619-621)GAG>GAA	p.E207E	TMED8_uc010ast.1_5'Flank|TMED8_uc001xto.1_5'Flank	NM_001010860	NP_001010860	Q9P1V8	SAM15_HUMAN	hypothetical protein LOC161394	207											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0278)		CAGGTCTAGAGCCTCCAGAGC	0.458													34	53					0	0	1	0	0
SPATA7	55812	broad.mit.edu	37	14	88904658	88904658	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:88904658C>T	uc001xwq.2	+	12	1843	c.1692C>T	c.(1690-1692)TCC>TCT	p.S564S	SPATA7_uc001xwr.2_Silent_p.S532S|SPATA7_uc001xws.2_Silent_p.S500S|SPATA7_uc001xwt.2_Silent_p.S458S|SPATA7_uc001xwu.2_Intron	NM_018418	NP_060888	Q9P0W8	SPAT7_HUMAN	spermatogenesis-associated protein 7 isoform a	564					response to stimulus|visual perception					ovary(1)	1						CATCACCCTCCCAATCTGTTC	0.408													22	38					0	0	1	0	0
ZC3H14	79882	broad.mit.edu	37	14	89039314	89039314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:89039314C>T	uc001xww.2	+	6	1049	c.824C>T	c.(823-825)CCG>CTG	p.P275L	ZC3H14_uc010twd.1_Missense_Mutation_p.P275L|ZC3H14_uc010twe.1_Missense_Mutation_p.P275L|ZC3H14_uc001xwx.2_Missense_Mutation_p.P275L|ZC3H14_uc010twf.1_Missense_Mutation_p.P120L|ZC3H14_uc001xwy.2_Missense_Mutation_p.P241L|ZC3H14_uc010twg.1_Missense_Mutation_p.P120L|ZC3H14_uc001xxa.2_5'Flank	NM_024824	NP_079100	Q6PJT7	ZC3HE_HUMAN	zinc finger CCCH-type containing 14 isoform 1	275						cytoplasm|cytoplasm|nuclear speck	protein binding|RNA binding|zinc ion binding			ovary(2)|skin(1)	3						ACGTATAGTCCGTTCTTTAGA	0.393													31	38					0	0	1	0	0
EML5	161436	broad.mit.edu	37	14	89202882	89202882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:89202882C>T	uc001xxg.2	-	8	1061	c.875G>A	c.(874-876)CGA>CAA	p.R292Q		NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	292	WD 6.					cytoplasm|microtubule				ovary(3)	3						GTGGTCACCTCGCCAACACAC	0.284													45	77					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91747817	91747817	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:91747817G>A	uc010aty.2	-	27	4782	c.4683C>T	c.(4681-4683)CCC>CCT	p.P1561P	CCDC88C_uc001xzj.2_Silent_p.P85P|CCDC88C_uc001xzi.2_5'UTR	NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1561					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				GCCTGTGGTTGGGGACCTCAA	0.507													20	44					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94044364	94044364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:94044364G>A	uc001ybv.1	+	15	1940	c.1857G>A	c.(1855-1857)ATG>ATA	p.M619I	KIAA1409_uc001ybs.1_Missense_Mutation_p.M619I	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	796						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		ATGATGAAATGAATCTAAATT	0.423													19	27					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94048566	94048566	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:94048566G>A	uc001ybv.1	+	17	2231	c.2148G>A	c.(2146-2148)CTG>CTA	p.L716L	KIAA1409_uc001ybs.1_Silent_p.L716L	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	893						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CAGACAGCCTGGAGGATAGCC	0.557													18	52					0	0	1	0	0
BDKRB1	623	broad.mit.edu	37	14	96730172	96730172	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:96730172C>T	uc001yfh.2	+	3	361	c.153C>T	c.(151-153)GGC>GGT	p.G51G	BDKRB1_uc010avn.2_Silent_p.G51G	NM_000710	NP_000701	P46663	BKRB1_HUMAN	bradykinin receptor B1	51	Helical; Name=1; (Potential).				elevation of cytosolic calcium ion concentration	endoplasmic reticulum|integral to plasma membrane	bradykinin receptor activity			ovary(3)	3		all_cancers(154;0.0677)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.208)|Epithelial(152;0.226)		GTTTCTTCGGCCTCCTAGGGA	0.547													14	30					0	0	1	0	0
CYP46A1	10858	broad.mit.edu	37	14	100173997	100173997	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:100173997C>T	uc001ygo.2	+	7	675	c.675C>T	c.(673-675)TCC>TCT	p.S225S	CYP46A1_uc001ygn.1_Silent_p.S187S|CYP46A1_uc001ygp.2_Silent_p.S72S	NM_006668	NP_006659	Q9Y6A2	CP46A_HUMAN	cytochrome P450, family 46	225					bile acid biosynthetic process|cholesterol catabolic process|nervous system development|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol 24-hydroxylase activity|electron carrier activity|heme binding|steroid hydroxylase activity				0		Melanoma(154;0.0866)|all_epithelial(191;0.179)				TCACTGCGTCCCGCAACACTC	0.547													26	44					0	0	1	0	0
WDR25	79446	broad.mit.edu	37	14	100992261	100992261	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:100992261C>T	uc010avx.2	+	5	1249	c.1156C>T	c.(1156-1158)CGG>TGG	p.R386W	WDR25_uc001yhm.2_Missense_Mutation_p.R378W|WDR25_uc001yhn.2_Missense_Mutation_p.R386W|WDR25_uc010avy.2_RNA|WDR25_uc001yho.2_Missense_Mutation_p.R129W	NM_001161476	NP_001154948	Q64LD2	WDR25_HUMAN	WD repeat domain 25	386	WD 4.										0		Melanoma(154;0.212)				CCTGTTCCTCCGGGAAGGCTC	0.597													25	35					0	0	1	0	0
MIR543	100126335	broad.mit.edu	37	14	101498354	101498354	+	RNA	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:101498354C>T	hsa-mir-543|MI0005565	+			c.31C>T			MIR495_hsa-mir-495|MI0003135_5'Flank																	0						GTGTTTTTTTCGCTTTATTTG	0.498													14	30					0	0	1	0	0
KIAA0284	283638	broad.mit.edu	37	14	105352963	105352963	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:105352963C>T	uc010axb.2	+	12	2611	c.2387C>T	c.(2386-2388)TCT>TTT	p.S796F	INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Missense_Mutation_p.S726F|KIAA0284_uc001yps.2_Missense_Mutation_p.S702F|KIAA0284_uc001ypt.2_5'Flank	NM_001112726	NP_001106197	Q9Y4F5	K0284_HUMAN	hypothetical protein LOC283638 isoform 1	796						cytoplasm|microtubule				breast(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000472)|OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0149)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.178)		ACTCCCGCCTCTTTCTTCATT	0.677													6	11					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105420451	105420451	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:105420451A>C	uc010axc.1	-	7	1457	c.1337T>G	c.(1336-1338)ATG>AGG	p.M446R	AHNAK2_uc001ypx.2_Missense_Mutation_p.M346R	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	446						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CTCCCGGCTCATTCCAGGAGT	0.632													9	23					0	0	1	0	0
MTA1	9112	broad.mit.edu	37	14	105936543	105936543	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:105936543C>T	uc001yqx.2	+	21	2326	c.2139C>T	c.(2137-2139)ATC>ATT	p.I713I	MTA1_uc001yqy.2_RNA|MTA1_uc001yrb.2_Silent_p.I478I|CRIP2_uc010tyr.1_5'Flank|CRIP2_uc001yrc.2_5'Flank	NM_004689	NP_004680	Q13330	MTA1_HUMAN	metastasis associated protein	713					signal transduction	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(154;0.0293)|all_epithelial(191;0.128)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00897)|Epithelial(46;0.026)	Epithelial(152;0.19)		CCATCGTCATCGAGGACTAGG	0.473													3	4					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106174252	106174252	+	RNA	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:106174252G>A	uc010tyt.1	-	3632		c.59868C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron					Parts of antibodies, mostly variable regions.												0						AGCAGCCACAGAGGTCACGCT	0.612													5	7					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106321789	106321789	+	RNA	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:106321789G>A	uc010tyt.1	-	3599		c.55607C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						CCCTCGCGCAGCCAGGACACC	0.652													21	24					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106725369	106725369	+	RNA	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:106725369C>T	uc010tyt.1	-	588		c.18178G>A								Parts of antibodies, mostly variable regions.												0						CCAGCCCCTTCCCTGGAGCCT	0.582													85	130					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106994082	106994082	+	RNA	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:106994082C>T	uc010tyt.1	-	187		c.8365G>A								Parts of antibodies, mostly variable regions.												0						TACCAAGCCTCCCCCAGACTC	0.557													55	64					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107178951	107178951	+	RNA	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr14:107178951C>T	uc010tyt.1	-	32		c.2287G>A								Parts of antibodies, mostly variable regions.												0						TATTTATCATCATCCCAATCA	0.517													20	26					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20588709	20588709	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:20588709C>T	uc001ytg.2	-	27	4061	c.3352G>A	c.(3352-3354)GAA>AAA	p.E1118K	uc010tyx.1_RNA					RecName: Full=Putative HERC2-like protein 3;																		GACATTCTTTCCTGAAAAATA	0.294													9	57					0	0	1	0	0
GOLGA6L6	727832	broad.mit.edu	37	15	20743926	20743926	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:20743926C>T	uc001ytk.2	-	3	457	c.366G>A	c.(364-366)AGG>AGA	p.R122R		NM_001145004	NP_001138476	A8MZA4	GG6L6_HUMAN	golgi autoantigen, golgin subfamily a, 6-like 6	122	Potential.										0						CTAGCTCCCTCCTTAGGGCTT	0.493													7	1					0	0	1	0	0
LOC646214	646214	broad.mit.edu	37	15	21937623	21937623	+	RNA	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:21937623C>T	uc010tzj.1	-	1		c.3117G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						CATCGTCCTCCTCCTCTGTCA	0.498													14	69					0	0	1	0	0
CYFIP1	23191	broad.mit.edu	37	15	22990188	22990188	+	Silent	SNP	C	T	T	rs148724829		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:22990188C>T	uc001yus.2	+	24	2912	c.2808C>T	c.(2806-2808)GTC>GTT	p.V936V	CYFIP1_uc001yut.2_Silent_p.V936V|CYFIP1_uc010aya.1_Silent_p.V964V|CYFIP1_uc001yuu.2_Silent_p.V505V|CYFIP1_uc001yuv.2_Silent_p.V130V	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	936					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		TGCTGAAGGTCGTCAAGAGCC	0.582													22	37					0	0	1	0	0
MKRN3	7681	broad.mit.edu	37	15	23811776	23811776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:23811776G>A	uc001ywh.3	+	1	1323	c.847G>A	c.(847-849)GAA>AAA	p.E283K	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Missense_Mutation_p.E283K	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	283	Makorin-type Cys-His.					ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		TGCCCAGAGGGAAGAACATAT	0.532													11	22					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921455	24921455	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:24921455G>A	uc001ywo.2	+	1	915	c.441G>A	c.(439-441)GAG>GAA	p.E147E		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	147					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CTCTCCTGGAGGAGACCGAGG	0.607													10	33					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921836	24921836	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:24921836G>A	uc001ywo.2	+	1	1296	c.822G>A	c.(820-822)CAG>CAA	p.Q274Q		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	274					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TGCTGCAGCAGAAGTTGGCTG	0.617													21	36					0	0	1	0	0
GABRB3	2562	broad.mit.edu	37	15	26866489	26866489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:26866489G>A	uc001zaz.2	-	4	575	c.433C>T	c.(433-435)CCT>TCT	p.P145S	GABRB3_uc010uae.1_Missense_Mutation_p.P60S|GABRB3_uc001zba.2_Missense_Mutation_p.P145S|GABRB3_uc001zbb.2_Missense_Mutation_p.P201S|GABRB3_uc001zbc.2_RNA	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	145	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GTCCCATCAGGGTGAAGACGG	0.473													41	87					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34130445	34130445	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:34130445C>T	uc001zhi.2	+	89	12334	c.12264C>T	c.(12262-12264)TTC>TTT	p.F4088F	RYR3_uc010bar.2_Silent_p.F4083F	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	4088					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TTGTGAACTTCTGTGAGGACA	0.453													29	61					0	0	1	0	0
SLC12A6	9990	broad.mit.edu	37	15	34546782	34546782	+	Silent	SNP	G	A	A	rs146726039		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:34546782G>A	uc001zhw.2	-	8	1049	c.885C>T	c.(883-885)ATC>ATT	p.I295I	SLC12A6_uc001zhv.2_Silent_p.I244I|SLC12A6_uc001zhx.2_Silent_p.I280I|SLC12A6_uc001zhy.2_RNA|SLC12A6_uc001zhz.2_RNA|SLC12A6_uc001zia.2_Silent_p.I236I|SLC12A6_uc001zib.2_Silent_p.I286I|SLC12A6_uc001zic.2_Silent_p.I295I|SLC12A6_uc010bau.2_Silent_p.I295I|SLC12A6_uc001zid.2_Silent_p.I236I|SLC12A6_uc001zhu.2_Silent_p.I107I	NM_133647	NP_598408	Q9UHW9	S12A6_HUMAN	solute carrier family 12, member 6 isoform a	295	Helical; (Potential).				angiogenesis|cellular hypotonic salinity response|potassium ion transport|sodium ion transport	basolateral plasma membrane|integral to membrane	potassium:chloride symporter activity			central_nervous_system(5)|ovary(1)|skin(1)	7		all_lung(180;2.78e-08)		all cancers(64;3.43e-17)|GBM - Glioblastoma multiforme(113;2.6e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0301)	Potassium Chloride(DB00761)	CTCGGGGGACGATATAGACCT	0.383													10	26					0	0	1	0	0
LPCAT4	254531	broad.mit.edu	37	15	34657825	34657825	+	Silent	SNP	A	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:34657825A>G	uc001zig.2	-	2	286	c.192T>C	c.(190-192)TTT>TTC	p.F64F	LPCAT4_uc010bav.1_Silent_p.F64F	NM_153613	NP_705841	Q643R3	LPCT4_HUMAN	lysophosphatidylcholine acyltransferase 4	64					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity|calcium ion binding				0						GAAGCCAGGCAAAGGGCCAGA	0.572													16	46					0	0	1	0	0
TYRO3	7301	broad.mit.edu	37	15	41859614	41859614	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:41859614C>T	uc001zof.1	+	7	1064	c.840C>T	c.(838-840)CCC>CCT	p.P280P		NM_006293	NP_006284	Q06418	TYRO3_HUMAN	TYRO3 protein tyrosine kinase precursor	280	Fibronectin type-III 1.|Extracellular (Potential).					integral to plasma membrane	ATP binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			ovary(3)|lung(2)|central_nervous_system(1)	6		all_cancers(109;7.33e-15)|all_epithelial(112;2.8e-12)|Lung NSC(122;3.48e-08)|all_lung(180;1.71e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.31e-18)|GBM - Glioblastoma multiforme(113;9.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.117)		CTGTGCCCCCCTTTACCTGCC	0.607													28	102					0	0	1	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42107506	42107506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:42107506C>T	uc001zok.3	+	12	1524	c.1238C>T	c.(1237-1239)TCC>TTC	p.S413F	MAPKBP1_uc001zoj.3_Missense_Mutation_p.S407F|MAPKBP1_uc010bcj.2_5'UTR|MAPKBP1_uc010bci.2_Missense_Mutation_p.S407F|MAPKBP1_uc010udb.1_Intron|MAPKBP1_uc010bck.2_5'UTR|MAPKBP1_uc010bcl.2_5'UTR	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	413	WD 6.									central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		CCCCCCAGTTCCTTTATTACC	0.582													16	36					0	0	1	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42280289	42280289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:42280289C>T	uc001zow.1	-	15	1702	c.1702G>A	c.(1702-1704)GAG>AAG	p.E568K	PLA2G4E_uc010udc.1_Missense_Mutation_p.E40K|PLA2G4E_uc001zov.1_Missense_Mutation_p.E221K	NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	585	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		TGGAAAAACTCCTCCGAGGTG	0.612													5	9					0	0	1	0	0
VPS39	23339	broad.mit.edu	37	15	42459594	42459594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:42459594G>A	uc001zpd.2	-	14	1559	c.1408C>T	c.(1408-1410)CAT>TAT	p.H470Y	VPS39_uc001zpc.2_Missense_Mutation_p.H459Y|VPS39_uc001zpb.2_5'Flank	NM_015289	NP_056104	Q96JC1	VPS39_HUMAN	vacuolar protein sorting 39	470					protein transport	HOPS complex|late endosome membrane|lysosomal membrane	small GTPase regulator activity			ovary(1)|pancreas(1)|skin(1)	3		all_cancers(109;6.78e-16)|all_epithelial(112;1.81e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;3.05e-06)		TAACTCACATGGAGATAGCAC	0.527													18	35					0	0	1	0	0
CAPN3	825	broad.mit.edu	37	15	42652221	42652221	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:42652221T>A	uc001zpn.1	+	1	524	c.218T>A	c.(217-219)GTT>GAT	p.V73D	CAPN3_uc001zpk.1_Intron|CAPN3_uc001zpl.1_Intron|CAPN3_uc010udf.1_Intron|CAPN3_uc010udg.1_Intron|CAPN3_uc001zpo.1_Missense_Mutation_p.V73D|CAPN3_uc001zpp.1_Missense_Mutation_p.V73D	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a	73					muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		GAAAAGAAAGTTCTTTATGTG	0.458													89	156					0	0	1	0	0
SPG11	80208	broad.mit.edu	37	15	44921560	44921560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:44921560C>T	uc001ztx.2	-	9	1793	c.1762G>A	c.(1762-1764)GAT>AAT	p.D588N	SPG11_uc010ueh.1_Missense_Mutation_p.D588N|SPG11_uc010uei.1_Missense_Mutation_p.D588N|SPG11_uc001zua.1_Missense_Mutation_p.D588N	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	588	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		CAAAGTAAATCCAATGCTGGT	0.338													17	13					0	0	1	0	0
SLC27A2	11001	broad.mit.edu	37	15	50494789	50494789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:50494789C>T	uc001zxw.2	+	3	1026	c.794C>T	c.(793-795)CCC>CTC	p.P265L	SLC27A2_uc010bes.2_Intron|SLC27A2_uc001zxx.2_Missense_Mutation_p.P30L	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid	265	Helical; (Potential).				bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		ATCACTCTGCCCTTTTACCAC	0.443													29	89					0	0	1	0	0
TNFAIP8L3	388121	broad.mit.edu	37	15	51350173	51350173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:51350173G>A	uc001zyy.2	-	3	884	c.784C>T	c.(784-786)CTC>TTC	p.L262F		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	262											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		AGGGTGGAGAGGAACTCCACA	0.522													12	31					0	0	1	0	0
SCG3	29106	broad.mit.edu	37	15	51975487	51975487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:51975487G>A	uc002abh.2	+	4	661	c.253G>A	c.(253-255)GAA>AAA	p.E85K	SCG3_uc010ufz.1_5'UTR	NM_013243	NP_037375	Q8WXD2	SCG3_HUMAN	secretogranin III isoform 1 precursor	85					platelet activation|platelet degranulation	extracellular region|stored secretory granule				ovary(1)	1				all cancers(107;0.00488)		AACAGAAAAGGAAAAAATTGA	0.373													51	94					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54841844	54841844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:54841844G>A	uc002ack.2	+	26	5832	c.5832G>A	c.(5830-5832)ATG>ATA	p.M1944I		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1944	MHD2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GACCCCAGATGATTTTCATTG	0.318													28	45					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	62535259	62535259	+	RNA	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:62535259C>T	uc002ain.1	-	10		c.2475G>A			uc002ait.2_5'Flank|uc002aiu.2_5'Flank|uc002aiv.2_5'Flank|uc002aix.1_5'Flank|uc002aiy.2_5'Flank|uc002aiz.1_5'Flank|uc002aja.2_5'Flank|uc002ajb.2_5'Flank|uc002ajc.2_5'Flank|uc002ajd.2_5'Flank|uc002aje.2_5'Flank|uc002ajf.2_5'Flank|uc010uhn.1_5'Flank|uc002ajg.1_5'Flank|uc002aji.2_5'Flank|uc010uho.1_5'Flank|uc002ajk.2_5'Flank					Homo sapiens cDNA FLJ38723 fis, clone KIDNE2010137, weakly similar to GOLGIN-95.																		GCCCCAATCTCCTGGGGGGCT	0.637													7	8					0	0	1	0	0
PIAS1	8554	broad.mit.edu	37	15	68468991	68468991	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:68468991G>A	uc002aqz.2	+	11	1576	c.1480G>A	c.(1480-1482)GGC>AGC	p.G494S	PIAS1_uc002ara.2_Missense_Mutation_p.G102S	NM_016166	NP_057250	O75925	PIAS1_HUMAN	protein inhibitor of activated STAT, 1	494					androgen receptor signaling pathway|interferon-gamma-mediated signaling pathway|JAK-STAT cascade|positive regulation of protein sumoylation|positive regulation of transcription, DNA-dependent|regulation of interferon-gamma-mediated signaling pathway|transcription, DNA-dependent	nuclear speck	androgen receptor binding|DNA binding|enzyme binding|SUMO ligase activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)	2						AAATAATAAAGGGTAAGTGCT	0.363													8	28					0	0	1	0	0
CT62	196993	broad.mit.edu	37	15	71403552	71403552	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:71403552G>A	uc002ata.2	-	4	862	c.349C>T	c.(349-351)CCT>TCT	p.P117S		NM_001102658	NP_001096128	P0C5K7	CT62_HUMAN	cancer/testis antigen 62	117											0						AGCAGAAAAGGGAAAGAGAAG	0.463													4	8					0	0	1	0	0
NR2E3	10002	broad.mit.edu	37	15	72105876	72105876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:72105876G>A	uc002ati.2	+	6	1085	c.895G>A	c.(895-897)GAG>AAG	p.E299K	NR2E3_uc002ath.1_Missense_Mutation_p.E299K	NM_014249	NP_055064	Q9Y5X4	NR2E3_HUMAN	photoreceptor-specific nuclear receptor isoform	299					phototransduction|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0						GGCCAGCATGGAGACGCGTGT	0.652													6	14					0	0	1	0	0
COMMD4	54939	broad.mit.edu	37	15	75631649	75631649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:75631649C>T	uc002azy.2	+	6	403	c.346C>T	c.(346-348)CCC>TCC	p.P116S	COMMD4_uc010umf.1_3'UTR|COMMD4_uc002azz.2_Silent_p.A98A|COMMD4_uc002baa.2_Missense_Mutation_p.P116S|COMMD4_uc010umg.1_3'UTR|COMMD4_uc010umh.1_RNA	NM_017828	NP_060298	Q9H0A8	COMD4_HUMAN	COMM domain containing 4	116						cytoplasm	protein binding				0						GAAGCAAAGCCCCTTGCAGAA	0.592													8	31					0	0	1	0	0
SIN3A	25942	broad.mit.edu	37	15	75684868	75684868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:75684868C>T	uc002bai.2	-	15	2825	c.2566G>A	c.(2566-2568)GGT>AGT	p.G856S	SIN3A_uc002baj.2_Missense_Mutation_p.G856S|SIN3A_uc010uml.1_Missense_Mutation_p.G856S	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	856					blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						CCCCCAACACCATTGTGCTTC	0.443													44	69					0	0	1	0	0
PTPN9	5780	broad.mit.edu	37	15	75816559	75816559	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:75816559G>A	uc002bal.2	-	3	796	c.288C>T	c.(286-288)TTC>TTT	p.F96F		NM_002833	NP_002824	P43378	PTN9_HUMAN	protein tyrosine phosphatase, non-receptor type	96	CRAL-TRIO.					cytoplasmic part	non-membrane spanning protein tyrosine phosphatase activity|protein binding			lung(1)|skin(1)	2						CTAAGATGGTGAATTTTCCAC	0.383													21	36					0	0	1	0	0
CSPG4	1464	broad.mit.edu	37	15	75983118	75983118	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:75983118C>T	uc002baw.2	-	3	381	c.288G>A	c.(286-288)CTG>CTA	p.L96L		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	96	Extracellular (Potential).|Globular or compact configuration stabilized by disulfide bonds.|Laminin G-like 1.|Neurite growth inhibition (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						CTGGAGTCTGCAGCCTCAGCT	0.547													4	104					0	0	1	0	0
HMG20A	10363	broad.mit.edu	37	15	77756589	77756589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:77756589C>T	uc002bcr.2	+	4	298	c.97C>T	c.(97-99)CAC>TAC	p.H33Y	HMG20A_uc002bcq.1_Missense_Mutation_p.H33Y|HMG20A_uc002bcs.2_Missense_Mutation_p.H33Y	NM_018200	NP_060670	Q9NP66	HM20A_HUMAN	high-mobility group 20A	33					chromatin modification	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						CAGGTTAAATCACCCAGAGGT	0.433													18	34					0	0	1	0	0
KIAA1199	57214	broad.mit.edu	37	15	81172099	81172099	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:81172099G>A	uc002bfw.1	+	4	544	c.284G>A	c.(283-285)CGA>CAA	p.R95Q	KIAA1199_uc010unn.1_Missense_Mutation_p.R95Q	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	95	G8.									upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						ATTGTTTTGCGAACCCGGCAC	0.498													24	44					0	0	1	0	0
AGBL1	123624	broad.mit.edu	37	15	86801252	86801252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:86801252G>A	uc002blz.1	+	8	901	c.821G>A	c.(820-822)GGG>GAG	p.G274E		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	274	Asp-rich.				C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						ACTGAAGATGGGAAAGTGGAA	0.428													33	63					0	0	1	0	0
FANCI	55215	broad.mit.edu	37	15	89835919	89835919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:89835919G>A	uc010bnp.1	+	21	2083	c.1993G>A	c.(1993-1995)GAT>AAT	p.D665N	FANCI_uc002bnm.1_Missense_Mutation_p.D665N|FANCI_uc002bnn.1_RNA|FANCI_uc002bnp.1_Missense_Mutation_p.D486N|FANCI_uc002bnq.1_Missense_Mutation_p.D78N	NM_001113378	NP_001106849	Q9NVI1	FANCI_HUMAN	Fanconi anemia, complementation group I isoform	665					cell cycle|DNA repair	nucleoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					TCTCCTACAGGATTATCTGCT	0.279								Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				19	44					0	0	1	0	0
C15orf58	390637	broad.mit.edu	37	15	90784905	90784905	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:90784905C>T	uc002bpc.2	+	4	944	c.765C>T	c.(763-765)TTC>TTT	p.F255F		NM_001013657	NP_001013679	Q6ZNW5	VTC2_HUMAN	hypothetical protein LOC390637	255					glucose metabolic process	cytoplasm	GDP-D-glucose phosphorylase activity				0						CTCCTGGCTTCCTCTTTTACA	0.577													11	18					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94841610	94841610	+	Missense_Mutation	SNP	G	A	A	rs149237812	byFrequency	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:94841610G>A	uc002btj.2	+	1	181	c.116G>A	c.(115-117)CGG>CAG	p.R39Q	MCTP2_uc010urg.1_Missense_Mutation_p.R39Q|MCTP2_uc002bti.2_Missense_Mutation_p.R39Q|MCTP2_uc010boj.2_5'UTR|MCTP2_uc010bok.2_Missense_Mutation_p.R39Q|MCTP2_uc002btg.3_Missense_Mutation_p.R39Q|MCTP2_uc002bth.3_Missense_Mutation_p.R39Q	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	39					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			CCAGATCTACGGGCAAGGCAT	0.572													21	28					0	0	1	0	0
SPATA8	145946	broad.mit.edu	37	15	97328288	97328289	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr15:97328288_97328289CC>TT	uc002bue.2	+	3	469_470	c.259_260CC>TT	c.(259-261)CCA>TTA	p.P87L	uc010urp.1_5'Flank|uc002bud.1_5'Flank	NM_173499	NP_775770	Q6RVD6	SPAT8_HUMAN	spermatogenesis associated 8	87										ovary(1)|skin(1)	2	Melanoma(26;0.0142)|Lung NSC(78;0.041)|all_lung(78;0.0468)		OV - Ovarian serous cystadenocarcinoma(32;0.0718)			ATCTGCTTCCCCACTGATTCAG	0.446													37	59					0	0	1	0	0
RHBDF1	64285	broad.mit.edu	37	16	111912	111912	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:111912G>A	uc002cfl.3	-	11	1240	c.1092C>T	c.(1090-1092)TTC>TTT	p.F364F	RHBDF1_uc010uty.1_Silent_p.F387F|RHBDF1_uc010utz.1_Silent_p.F364F|RHBDF1_uc010bqo.1_RNA	NM_022450	NP_071895	Q96CC6	RHDF1_HUMAN	rhomboid family 1	364	Cytoplasmic (Potential).				cell migration|cell proliferation|negative regulation of protein secretion|protein transport|proteolysis|regulation of epidermal growth factor receptor signaling pathway|regulation of proteasomal protein catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity			ovary(1)|pancreas(1)	2		all_cancers(16;2.56e-05)|all_epithelial(16;0.000116)|Hepatocellular(780;0.0068)|Lung NSC(18;0.0795)|all_lung(18;0.159)				TCTCCCGGGCGAAGAGCTTGC	0.711													15	18					0	0	1	0	0
PIGQ	9091	broad.mit.edu	37	16	633614	633614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:633614C>T	uc002cho.2	+	10	2365	c.2263C>T	c.(2263-2265)CCT>TCT	p.P755S	PIGQ_uc010bqw.2_3'UTR|PIGQ_uc002chn.2_3'UTR|PIGQ_uc010uui.1_3'UTR|PIGQ_uc002chp.2_Missense_Mutation_p.P325S|uc010uuj.1_Missense_Mutation_p.G58R	NM_148920	NP_683721	Q9BRB3	PIGQ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	755					C-terminal protein lipidation|carbohydrate metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			central_nervous_system(1)	1		Hepatocellular(780;0.00335)				GCGGATGTTCCCTGGAGAGGT	0.647													36	55					0	0	1	0	0
BAIAP3	8938	broad.mit.edu	37	16	1392722	1392722	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:1392722G>A	uc002clk.1	+	13	1173	c.1173G>A	c.(1171-1173)AGG>AGA	p.R391R	BAIAP3_uc002clj.2_Silent_p.R373R|BAIAP3_uc010uuz.1_Silent_p.R356R|BAIAP3_uc010uva.1_Silent_p.R328R|BAIAP3_uc010uvc.1_Silent_p.R320R	NM_003933	NP_003924	O94812	BAIP3_HUMAN	BAI1-associated protein 3	391					G-protein coupled receptor protein signaling pathway|neurotransmitter secretion		protein C-terminus binding			pancreas(1)	1		Hepatocellular(780;0.0893)				CGTTGCAGAGGGATACGGCCA	0.667													7	18					0	0	1	0	0
TSC2	7249	broad.mit.edu	37	16	2121513	2121513	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:2121513C>T	uc002con.2	+	18	1948	c.1842C>T	c.(1840-1842)GCC>GCT	p.A614A	TSC2_uc010bsd.2_Silent_p.A614A|TSC2_uc002coo.2_Silent_p.A614A|TSC2_uc010uvv.1_Silent_p.A577A|TSC2_uc010uvw.1_Silent_p.A565A|TSC2_uc002cop.2_Silent_p.A414A	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	614			A -> D (in TSC2).		cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				CCTGACAGGCCTTTGACTTCC	0.642			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				17	11					0	0	1	0	0
PKD1	5310	broad.mit.edu	37	16	2152832	2152832	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:2152832G>A	uc002cos.1	-	24	9140	c.8931C>T	c.(8929-8931)ACC>ACT	p.T2977T	PKD1_uc002cot.1_Silent_p.T2977T|PKD1_uc010bse.1_RNA	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	2977	Extracellular (Potential).		T -> N.		calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						AAATGAAGAAGGTGTAGGGCC	0.652													22	35					0	0	1	0	0
MEFV	4210	broad.mit.edu	37	16	3304437	3304437	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:3304437C>T	uc002cun.1	-	2	671	c.631G>A	c.(631-633)GGG>AGG	p.G211R		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	211					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	TGCAGCCTCCCCGCGGAGCTG	0.741													4	11					0	0	1	0	0
OR2C1	4993	broad.mit.edu	37	16	3406126	3406126	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:3406126C>T	uc002cuw.1	+	1	238	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_012368	NP_036500	O95371	OR2C1_HUMAN	olfactory receptor, family 2, subfamily C,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGTACTTCTTCCTCAGCAACC	0.517													62	83					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858006	9858006	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:9858006G>A	uc002czo.3	-	13	3943	c.3395C>T	c.(3394-3396)CCA>CTA	p.P1132L	GRIN2A_uc010uym.1_Missense_Mutation_p.P1132L|GRIN2A_uc010uyn.1_Missense_Mutation_p.P975L|GRIN2A_uc002czr.3_Missense_Mutation_p.P1132L	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1132	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AAACTGGGGTGGATCTAAGTG	0.532													41	71					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20480926	20480926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:20480926G>A	uc010bwe.2	+	5	720	c.481G>A	c.(481-483)GAT>AAT	p.D161N	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_Missense_Mutation_p.D82N|ACSM2A_uc002dhf.3_Missense_Mutation_p.D161N|ACSM2A_uc002dhg.3_Missense_Mutation_p.D161N|ACSM2A_uc010vay.1_Missense_Mutation_p.D82N	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	161					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						TGTTGCTGGGGATGAAGTCAT	0.448													51	61					0	0	1	0	0
ACSM1	116285	broad.mit.edu	37	16	20673126	20673126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:20673126C>T	uc002dhm.1	-	6	1050	c.982G>A	c.(982-984)GAT>AAT	p.D328N	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.D328N	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	328					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						CTGGTGAAATCCTGCTGCAGA	0.373													24	33					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20974661	20974661	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:20974661G>A	uc010vbe.1	-	53	10545	c.10545C>T	c.(10543-10545)TCC>TCT	p.S3515S	DNAH3_uc010vbd.1_Silent_p.S950S	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3515	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CACAGCAGCTGGAATCATTGT	0.498													16	40					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20986719	20986719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:20986719C>T	uc010vbe.1	-	51	8095	c.8095G>A	c.(8095-8097)GAA>AAA	p.E2699K	DNAH3_uc010vbd.1_Missense_Mutation_p.E134K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2699	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GCTGTCAGTTCTCTTTGCATA	0.463													35	49					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20999054	20999054	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:20999054C>T	uc010vbe.1	-	46	6843	c.6843G>A	c.(6841-6843)GTG>GTA	p.V2281V	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2281	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CCCCTTGAATCACTCGTGAGA	0.463													18	50					0	0	1	0	0
EEF2K	29904	broad.mit.edu	37	16	22278176	22278176	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:22278176C>T	uc002dki.2	+	15	2228	c.1743C>T	c.(1741-1743)ATC>ATT	p.I581I	EEF2K_uc002dkh.2_RNA	NM_013302	NP_037434	O00418	EF2K_HUMAN	elongation factor-2 kinase	581					insulin receptor signaling pathway|translational elongation	cytosol	ATP binding|calcium ion binding|calmodulin binding|elongation factor-2 kinase activity|translation factor activity, nucleic acid binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(48;0.0223)		CTCATCACATCCTAGCCGATG	0.632													38	79					0	0	1	0	0
CACNG3	10368	broad.mit.edu	37	16	24358083	24358083	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:24358083C>T	uc002dmf.2	+	2	1440	c.240C>T	c.(238-240)ATC>ATT	p.I80I		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	80					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		GCAAGAAAATCGATCACTTCC	0.582													29	37					0	0	1	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147159	26147159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:26147159C>T	uc002dof.2	+	2	1353	c.961C>T	c.(961-963)CTC>TTC	p.L321F		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	321	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		AAACCGGACCCTCGGGCTGAT	0.547													68	134					0	0	1	0	0
KIAA0556	23247	broad.mit.edu	37	16	27751729	27751729	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:27751729T>C	uc002dow.2	+	15	2135	c.2111T>C	c.(2110-2112)GTC>GCC	p.V704A		NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	704										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						CTGTCGGCAGTCCCCACTTCG	0.493													32	64					0	0	1	0	0
CLN3	1201	broad.mit.edu	37	16	28489124	28489124	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:28489124G>A	uc002dpo.2	-	14	1454	c.1131C>T	c.(1129-1131)ATC>ATT	p.I377I	uc010vct.1_Intron|CLN3_uc002dpl.2_Silent_p.I299I|CLN3_uc010vcu.1_Silent_p.I277I|CLN3_uc002dpn.2_Silent_p.I278I|CLN3_uc002dpm.2_Silent_p.I323I|CLN3_uc010vcv.1_Silent_p.I353I|CLN3_uc010byd.2_Intron|CLN3_uc002dpp.2_Silent_p.I377I|CLN3_uc002dpt.1_Silent_p.I277I|CLN3_uc002dpq.1_Silent_p.I329I|CLN3_uc010bye.1_Silent_p.I360I|CLN3_uc002dpr.1_RNA|CLN3_uc010byf.1_RNA|CLN3_uc002dps.1_Silent_p.I250I|CLN3_uc002dpu.1_Silent_p.I275I	NM_000086	NP_000077	Q13286	CLN3_HUMAN	ceroid-lipofuscinosis, neuronal 3	377	Helical; (Potential).				amyloid precursor protein catabolic process|arginine transport|associative learning|autophagic vacuole fusion|cell death|cellular amino acid metabolic process|cytosolic calcium ion homeostasis|galactosylceramide metabolic process|globoside metabolic process|glucosylceramide metabolic process|ionotropic glutamate receptor signaling pathway|lysosomal lumen acidification|lysosomal lumen pH elevation|negative regulation of catalytic activity|negative regulation of macroautophagy|negative regulation of neuron apoptosis|negative regulation of proteolysis|neuromuscular process controlling balance|neurotransmitter metabolic process|protein catabolic process|protein folding|protein processing|receptor-mediated endocytosis|regulation of action potential|sphingomyelin metabolic process|vacuolar transport	autophagic vacuole|caveola|cytosol|early endosome|Golgi membrane|Golgi stack|integral to endoplasmic reticulum membrane|late endosome|lysosomal membrane|membrane fraction|mitochondrion|neuron projection|nucleus|synaptic vesicle|trans-Golgi network	unfolded protein binding				0						CATACAGAATGATCAGGAAGA	0.607													29	33					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30735796	30735796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:30735796C>T	uc002dze.1	+	25	5436	c.5051C>T	c.(5050-5052)GCC>GTC	p.A1684V	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.A1479V|SRCAP_uc010bzz.1_Missense_Mutation_p.A1254V	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1684	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CTGGCCCTAGCCCCAGCTTTA	0.577													51	116					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30747894	30747894	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:30747894C>T	uc002dze.1	+	33	7342	c.6957C>T	c.(6955-6957)TTC>TTT	p.F2319F	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Silent_p.F2114F	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2319	Glu-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CCATGAAATTCCTGGAGGCCT	0.537													12	22					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	31973470	31973470	+	RNA	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:31973470C>T	uc002ect.2	+	1		c.62C>T								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H186.																		CTGAGACTCTCCTGTGCAGCC	0.572													40	86					0	0	1	0	0
PHKB	5257	broad.mit.edu	37	16	47627450	47627450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:47627450C>T	uc002eev.3	+	11	1160	c.1108C>T	c.(1108-1110)CTT>TTT	p.L370F	PHKB_uc002eeu.3_Missense_Mutation_p.L363F	NM_000293	NP_000284	Q93100	KPBB_HUMAN	phosphorylase kinase, beta isoform a	370					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity			ovary(1)|large_intestine(1)|breast(1)	3		all_cancers(37;0.00447)|all_lung(18;0.00616)|Lung NSC(13;0.0418)|Breast(268;0.203)				CATATTTTTCCTTTATATGAT	0.249													11	22					0	0	1	0	0
BRD7	29117	broad.mit.edu	37	16	50362591	50362591	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:50362591G>A	uc002egf.1	-	10	1143	c.1076C>T	c.(1075-1077)CCC>CTC	p.P359L	BRD7_uc002ege.1_Missense_Mutation_p.P359L	NM_013263	NP_037395	Q9NPI1	BRD7_HUMAN	bromodomain containing 7	359					cell cycle|negative regulation of cell proliferation|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of histone acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleus	histone acetyl-lysine binding|p53 binding|transcription coactivator activity|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding				0		all_cancers(37;0.0127)				TCCTACAATGGGATCCACAGG	0.418													16	48					0	0	1	0	0
NKD1	85407	broad.mit.edu	37	16	50667138	50667138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:50667138C>T	uc002egg.1	+	10	1083	c.859C>T	c.(859-861)CCC>TCC	p.P287S		NM_033119	NP_149110	Q969G9	NKD1_HUMAN	naked cuticle homolog 1	287					Wnt receptor signaling pathway	cytoplasm|plasma membrane	calcium ion binding|protein binding				0		all_cancers(37;0.229)		GBM - Glioblastoma multiforme(240;0.243)		AGAACTGCCCCCCCGCACCTC	0.483													39	56					0	0	1	0	0
TOX3	27324	broad.mit.edu	37	16	52484400	52484400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:52484400G>A	uc002egw.2	-	4	638	c.467C>T	c.(466-468)TCC>TTC	p.S156F	TOX3_uc010vgt.1_Missense_Mutation_p.S151F|TOX3_uc010vgu.1_Missense_Mutation_p.S156F	NM_001080430	NP_001073899	O15405	TOX3_HUMAN	TOX high mobility group box family member 3	156					apoptosis|negative regulation of neuron apoptosis|positive regulation of anti-apoptosis|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|estrogen response element binding|phosphoprotein binding|protein homodimerization activity				0						GTGGACGATGGACCGCATGAT	0.557													40	63					0	0	1	0	0
NUDT21	11051	broad.mit.edu	37	16	56485101	56485101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:56485101G>A	uc002eja.2	-	1	161	c.14C>T	c.(13-15)CCG>CTG	p.P5L	OGFOD1_uc002ejb.2_5'Flank|OGFOD1_uc002ejc.2_5'Flank	NM_007006	NP_008937	O43809	CPSF5_HUMAN	cleavage and polyadenylation specific factor 5	5	Necessary for RNA-binding.				mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|protein tetramerization|termination of RNA polymerase II transcription	centrosome|mRNA cleavage factor complex|paraspeckles	AU-rich element binding|histone deacetylase binding|hydrolase activity|mRNA binding|protein homodimerization activity				0						GCGATTGGGCGGTACCACAGA	0.642													3	99					0	0	1	0	0
CNGB1	1258	broad.mit.edu	37	16	57954438	57954438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:57954438G>A	uc002emt.2	-	19	1719	c.1654C>T	c.(1654-1656)CGT>TGT	p.R552C	CNGB1_uc010cdh.2_Missense_Mutation_p.R546C	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	552	Cytoplasmic (Potential).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						GAGGCCGCACGGTCCTGGCCA	0.622													16	32					0	0	1	0	0
CCDC113	29070	broad.mit.edu	37	16	58313613	58313613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:58313613C>T	uc002ene.2	+	9	1145	c.1066C>T	c.(1066-1068)CGT>TGT	p.R356C	CCDC113_uc010vid.1_Missense_Mutation_p.R302C	NM_014157	NP_054876	Q9H0I3	CC113_HUMAN	coiled-coil domain containing 113 isoform 1	356						protein complex					0						AAAAGGCCATCGTAAGGCTTG	0.418													9	16					0	0	1	0	0
CNOT1	23019	broad.mit.edu	37	16	58575454	58575454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:58575454G>A	uc002env.2	-	34	5044	c.4751C>T	c.(4750-4752)CCT>CTT	p.P1584L	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.P1579L|CNOT1_uc010vik.1_Missense_Mutation_p.P541L	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	1584					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		GTCATTTGTAGGTAAGAAGCC	0.393													37	59					0	0	1	0	0
CMTM2	146225	broad.mit.edu	37	16	66622018	66622018	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:66622018A>G	uc002ept.2	+	4	903	c.743A>G	c.(742-744)AAA>AGA	p.K248R	CMTM2_uc010cdu.2_Missense_Mutation_p.K195R	NM_144673	NP_653274	Q8TAZ6	CKLF2_HUMAN	chemokine-like factor superfamily 2	248					chemotaxis	extracellular space|integral to membrane	cytokine activity			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.068)|Epithelial(162;0.212)		AAGGGAAAGAAATGACTTGGA	0.512													12	27					0	0	1	0	0
CDH16	1014	broad.mit.edu	37	16	66945163	66945163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:66945163C>T	uc002eql.2	-	14	1919	c.1846G>A	c.(1846-1848)GAG>AAG	p.E616K	CDH16_uc010cdy.2_Missense_Mutation_p.E616K|CDH16_uc002eqm.2_Missense_Mutation_p.E519K	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	616	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		GTGTGCACCTCCCCGGAGAAT	0.597													8	20					0	0	1	0	0
ELMO3	79767	broad.mit.edu	37	16	67235303	67235303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:67235303C>T	uc002esa.2	+	9	962	c.919C>T	c.(919-921)CTT>TTT	p.L307F	ELMO3_uc002esb.2_Missense_Mutation_p.L290F|ELMO3_uc002esc.2_Missense_Mutation_p.L141F	NM_024712	NP_078988	Q96BJ8	ELMO3_HUMAN	engulfment and cell motility 3	254					apoptosis|phagocytosis	cytoplasm|cytoskeleton	SH3 domain binding				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00067)|Epithelial(162;0.00442)|all cancers(182;0.0417)		GCTTGACTATCTTTGGCAGAG	0.408													58	94					0	0	1	0	0
LRRC36	55282	broad.mit.edu	37	16	67416106	67416106	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:67416106G>A	uc002esv.2	+	13	2020	c.2001G>A	c.(1999-2001)CTG>CTA	p.L667L	LRRC36_uc002esw.2_RNA|LRRC36_uc002esx.2_Silent_p.L546L|LRRC36_uc010vjk.1_Silent_p.L442L|LRRC36_uc010vjl.1_Silent_p.L139L|LRRC36_uc002esy.2_Silent_p.L177L	NM_018296	NP_060766	Q1X8D7	LRC36_HUMAN	leucine rich repeat containing 36 isoform 1	667	Potential.										0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0669)|Epithelial(162;0.161)		TTGCCCAGCTGAAAAAGCTGG	0.473													14	24					0	0	1	0	0
DUS2L	54920	broad.mit.edu	37	16	68112356	68112356	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:68112356C>T	uc002evi.2	+	16	1328	c.1179C>T	c.(1177-1179)CGC>CGT	p.R393R	DUS2L_uc002evj.2_Silent_p.R393R|DUS2L_uc010vkk.1_Silent_p.R358R|DUS2L_uc010cez.2_Silent_p.R306R	NM_017803	NP_060273	Q9NX74	DUS2L_HUMAN	dihydrouridine synthase 2-like, SMM1 homolog	393	DRBM.				tRNA processing	endoplasmic reticulum	double-stranded RNA binding|flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0131)|Epithelial(162;0.0564)		AGGTTCAACGCCCTCTAGATC	0.463													36	73					0	0	1	0	0
ZFP90	146198	broad.mit.edu	37	16	68598497	68598497	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:68598497C>T	uc010cff.2	+	5	2099	c.1807C>T	c.(1807-1809)CAT>TAT	p.H603Y	ZFP90_uc002ewb.2_3'UTR|ZFP90_uc002ewc.2_3'UTR|ZFP90_uc002ewd.2_Missense_Mutation_p.H603Y|ZFP90_uc002ewe.2_Missense_Mutation_p.H603Y	NM_133458	NP_597715	Q8TF47	ZFP90_HUMAN	zinc finger protein 90	603	C2H2-type 12.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00233)|Epithelial(162;0.0184)|all cancers(182;0.0946)		TCAGAGAATTCATACTGGAGA	0.398													50	76					0	0	1	0	0
COG8	84342	broad.mit.edu	37	16	69369170	69369170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:69369170G>A	uc002ewy.2	-	3	738	c.667C>T	c.(667-669)CCT>TCT	p.P223S	COG8_uc002ewz.3_Missense_Mutation_p.P223S	NM_032382	NP_115758	Q96MW5	COG8_HUMAN	component of oligomeric golgi complex 8	223					protein transport	Golgi membrane|Golgi transport complex				ovary(1)	1						AGGCAGGCAGGAAGCTGGATG	0.572													10	18					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70893991	70893991	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:70893991G>A	uc002ezr.2	-	71	12234	c.12106C>T	c.(12106-12108)CAC>TAC	p.H4036Y	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4037										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TTTTCAGGGTGGATGAAGCCC	0.478													20	51					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70993661	70993661	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:70993661G>A	uc002ezr.2	-	39	6156	c.6028C>T	c.(6028-6030)CCA>TCA	p.P2010S		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2011										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TTGCTCACTGGGTTGTTTTCC	0.498													4	22					0	0	1	0	0
MARVELD3	91862	broad.mit.edu	37	16	71674812	71674812	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:71674812G>A	uc002fau.2	+	3	1178	c.1115G>A	c.(1114-1116)GGC>GAC	p.G372D	PHLPP2_uc002fav.2_RNA|MARVELD3_uc010cge.2_3'UTR	NM_001017967	NP_001017967	Q96A59	MALD3_HUMAN	MARVEL domain containing 3 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane				skin(1)	1		Ovarian(137;0.125)				ATCATGTACGGCGCCAGCGTG	0.597													9	26					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72992340	72992340	+	Missense_Mutation	SNP	G	A	A	rs148894513	byFrequency	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:72992340G>A	uc002fck.2	-	2	2378	c.1705C>T	c.(1705-1707)CGT>TGT	p.R569C	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	569					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				AAGCTTAAACGATTCCTCCTG	0.517													34	49					0	0	1	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76528873	76528873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:76528873C>T	uc002feu.1	+	16	2532	c.2147C>T	c.(2146-2148)TCG>TTG	p.S716L	CNTNAP4_uc002fev.1_Missense_Mutation_p.S580L|CNTNAP4_uc010chb.1_Missense_Mutation_p.S643L|CNTNAP4_uc002fex.1_Missense_Mutation_p.S719L|CNTNAP4_uc002few.2_Missense_Mutation_p.S691L	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	716	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GGAGGTTCTTCGCCTGATCTT	0.423													57	72					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77317924	77317924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:77317924G>A	uc002ffc.3	-	23	4014	c.3595C>T	c.(3595-3597)CCT>TCT	p.P1199S		NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1199	PLAC.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CCATGCTGAGGAACTAGGTGA	0.428													30	58					0	0	1	0	0
DYNLRB2	83657	broad.mit.edu	37	16	80584431	80584431	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:80584431C>T	uc002ffo.2	+	6	387	c.267C>T	c.(265-267)ATC>ATT	p.I89I	DYNLRB2_uc002ffp.2_RNA|DYNLRB2_uc002ffq.2_RNA	NM_130897	NP_570967	Q8TF09	DLRB2_HUMAN	dynein, light chain, roadblock-type 2	89					microtubule-based movement|transport	cytoplasmic dynein complex|microtubule	microtubule motor activity				0						ATCTTCTGATCGTCATTCAGA	0.353													37	64					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81199444	81199444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:81199444C>T	uc002fgh.1	-	19	3218	c.3218G>A	c.(3217-3219)AGA>AAA	p.R1073K	PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	1073	REJ.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TGGTTTGTACCTGTTTGTGTA	0.582													15	20					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81253736	81253736	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:81253736G>A	uc002fgh.1	-	1	240	c.240C>T	c.(238-240)TCC>TCT	p.S80S	PKD1L2_uc002fgj.2_Silent_p.S80S	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	80	Extracellular (Potential).|C-type lectin.				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCCTGTCCTGGGAGATGTGCT	0.552													37	52					0	0	1	0	0
BCMO1	53630	broad.mit.edu	37	16	81324154	81324154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:81324154C>T	uc002fgn.1	+	11	1834	c.1616C>T	c.(1615-1617)TCC>TTC	p.S539F	BCMO1_uc010vnp.1_Missense_Mutation_p.S470F	NM_017429	NP_059125	Q9HAY6	BCDO1_HUMAN	beta-carotene 15,15'-monooxygenase	539					retinoid metabolic process|steroid metabolic process	cytosol	beta-carotene 15,15'-monooxygenase activity|metal ion binding|monooxygenase activity				0						GACAGGGCTTCCGACTGCCAC	0.537													26	50					0	0	1	0	0
LRRC50	123872	broad.mit.edu	37	16	84183923	84183923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:84183923G>A	uc002fhl.3	+	3	509	c.328G>A	c.(328-330)GAT>AAT	p.D110N	LRRC50_uc010chi.1_RNA	NM_178452	NP_848547	Q8NEP3	DAAF1_HUMAN	leucine rich repeat containing 50	110	LRR 1.		Missing (in CILD13).		axonemal dynein complex assembly|cilium morphogenesis	cilium axoneme|cytoplasm|spindle pole	dynein binding				0						AGCATTGAATGATACGCTGTA	0.368									Kartagener_syndrome				18	28					0	0	1	0	0
IRF8	3394	broad.mit.edu	37	16	85952307	85952307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:85952307C>T	uc002fjh.2	+	7	943	c.886C>T	c.(886-888)CGC>TGC	p.R296C	IRF8_uc010chp.2_Intron	NM_002163	NP_002154	Q02556	IRF8_HUMAN	interferon regulatory factor 8	296					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	nucleus	DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			breast(2)|ovary(1)	3		Prostate(104;0.0771)				GTGCCAGGGCCGCGTGTTCTG	0.662													10	18					0	0	1	0	0
FBXO31	79791	broad.mit.edu	37	16	87367551	87367551	+	Silent	SNP	G	A	A	rs139174683	byFrequency	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:87367551G>A	uc002fjw.2	-	8	1382	c.1338C>T	c.(1336-1338)TTC>TTT	p.F446F	FBXO31_uc010vot.1_Silent_p.F274F|FBXO31_uc002fjv.2_Silent_p.F338F	NM_024735	NP_079011	Q5XUX0	FBX31_HUMAN	F-box protein 31	446					cell cycle|cyclin catabolic process|mitotic cell cycle G1/S transition DNA damage checkpoint|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	SCF ubiquitin ligase complex	cyclin binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0272)		CGGGCAGCACGAACGGCTGCC	0.677													22	26					0	0	1	0	0
ANKRD11	29123	broad.mit.edu	37	16	89349805	89349805	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:89349805C>T	uc002fmx.1	-	9	3606	c.3145G>A	c.(3145-3147)GAC>AAC	p.D1049N	ANKRD11_uc002fmy.1_Missense_Mutation_p.D1049N|ANKRD11_uc002fnc.1_Missense_Mutation_p.D1049N|ANKRD11_uc002fnb.1_Missense_Mutation_p.D1006N	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1049	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		AATTCTTTGTCCTTCTGACAT	0.358													30	50					0	0	1	0	0
RPH3AL	9501	broad.mit.edu	37	17	169321	169321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:169321C>T	uc002frd.1	-	3	285	c.241G>A	c.(241-243)GAG>AAG	p.E81K	RPH3AL_uc010vpy.1_Missense_Mutation_p.E81K|RPH3AL_uc002fre.1_Missense_Mutation_p.E81K|RPH3AL_uc002frf.1_Missense_Mutation_p.E81K|RPH3AL_uc010cjl.1_Missense_Mutation_p.E81K	NM_006987	NP_008918	Q9UNE2	RPH3L_HUMAN	rabphilin 3A-like (without C2 domains)	81	RabBD.				exocytosis|intracellular protein transport	transport vesicle membrane	cytoskeletal protein binding|Rab GTPase binding|zinc ion binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.023)|all cancers(1;4.96e-06)|Epithelial(1;2.86e-05)|BRCA - Breast invasive adenocarcinoma(1;0.00453)|OV - Ovarian serous cystadenocarcinoma(1;0.0716)|LUAD - Lung adenocarcinoma(1115;0.102)|COAD - Colon adenocarcinoma(4;0.107)		CTCATGGTCTCCAGCCGCTCC	0.597													36	18					0	0	1	0	0
MYO1C	4641	broad.mit.edu	37	17	1386255	1386255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:1386255G>A	uc002fsp.2	-	4	666	c.446C>T	c.(445-447)GCC>GTC	p.A149V	MYO1C_uc002fsn.2_Missense_Mutation_p.A130V|MYO1C_uc002fso.2_Missense_Mutation_p.A114V|MYO1C_uc010vqj.1_Missense_Mutation_p.A114V|MYO1C_uc010vqk.1_Missense_Mutation_p.A125V	NM_001080779	NP_001074248	O00159	MYO1C_HUMAN	myosin IC isoform a	149	Myosin head-like.				mRNA transport|protein transport|transmembrane transport	basal plasma membrane|cytoplasm|filamentous actin|lateral plasma membrane|nuclear pore|nucleolus|nucleoplasm|stereocilium membrane	actin binding|ATP binding|calmodulin binding|motor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		CCTCTTGGTGGCCTCGGTCTT	0.672													10	27					0	0	1	0	0
SERPINF2	5345	broad.mit.edu	37	17	1657598	1657598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:1657598C>T	uc002ftk.1	+	10	1323	c.1246C>T	c.(1246-1248)CTC>TTC	p.L416F	SERPINF2_uc010vqr.1_Missense_Mutation_p.L352F	NM_000934	NP_000925	P08697	A2AP_HUMAN	alpha-2-antiplasmin isoform a precursor	416					acute-phase response|fibrinolysis|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)	Streptokinase(DB00086)	CCGCCCCTTCCTCTTCTTCAT	0.652													97	79					0	0	1	0	0
OR1G1	8390	broad.mit.edu	37	17	3029911	3029911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:3029911G>A	uc002fvc.1	-	1	935	c.935C>T	c.(934-936)TCC>TTC	p.S312F		NM_003555	NP_003546	P47890	OR1G1_HUMAN	olfactory receptor, family 1, subfamily G,	312	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCACTAAGGGGAATGAATTTT	0.423													45	36					0	0	1	0	0
OR1A1	8383	broad.mit.edu	37	17	3119772	3119772	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:3119772C>T	uc010vrc.1	+	1	858	c.858C>T	c.(856-858)TTC>TTT	p.F286F		NM_014565	NP_055380	Q9P1Q5	OR1A1_HUMAN	olfactory receptor, family 1, subfamily A,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TAAATCCTTTCATCTACAGTC	0.473													28	126					0	0	1	0	0
OR3A2	4995	broad.mit.edu	37	17	3181591	3181591	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:3181591G>A	uc002fvg.2	-	1	678	c.639C>T	c.(637-639)TTC>TTT	p.F213F		NM_002551	NP_002542	P47893	OR3A2_HUMAN	olfactory receptor, family 3, subfamily A,	213	Helical; Name=5; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						CTGCCATGATGAAACCCACAG	0.542													38	41					0	0	1	0	0
OR3A4	390756	broad.mit.edu	37	17	3213652	3213652	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:3213652C>T	uc002fvi.2	+	1	114	c.48C>T	c.(46-48)GTC>GTT	p.V16V		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						CCAAGTTTGTCCTGCTGGGCC	0.542													61	53					0	0	1	0	0
SPATA22	84690	broad.mit.edu	37	17	3365798	3365798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:3365798C>T	uc002fvm.2	-	5	545	c.308G>A	c.(307-309)GGA>GAA	p.G103E	SPATA22_uc010vrg.1_Missense_Mutation_p.G87E|SPATA22_uc010vrf.1_Missense_Mutation_p.G103E|SPATA22_uc002fvn.2_Missense_Mutation_p.G103E|SPATA22_uc002fvo.2_Missense_Mutation_p.G103E|SPATA22_uc002fvp.2_Missense_Mutation_p.G103E|SPATA22_uc010ckf.2_Missense_Mutation_p.G60E	NM_032598	NP_115987	Q8NHS9	SPT22_HUMAN	spermatogenesis associated 22	103											0						CTGGCTTCTTCCAGTATTTGA	0.264													64	54					0	0	1	0	0
GSG2	83903	broad.mit.edu	37	17	3628742	3628742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:3628742C>T	uc002fwp.2	+	1	1546	c.1513C>T	c.(1513-1515)CAC>TAC	p.H505Y	ITGAE_uc002fwo.3_Intron|ITGAE_uc002fwn.3_5'Flank	NM_031965	NP_114171	Q8TF76	HASP_HUMAN	haspin	505	Protein kinase.				cell cycle|chromatin modification|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity				0						AATTGCTGATCACACACCCGT	0.448													35	86					0	0	1	0	0
KIAA0753	9851	broad.mit.edu	37	17	6515303	6515303	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:6515303T>C	uc002gde.3	-	8	1840	c.1481A>G	c.(1480-1482)AAG>AGG	p.K494R	KIAA0753_uc010vtd.1_Intron|KIAA0753_uc010clo.2_Missense_Mutation_p.K195R|KIAA0753_uc010vte.1_Missense_Mutation_p.K195R	NM_014804	NP_055619	Q2KHM9	K0753_HUMAN	hypothetical protein LOC9851	494						centrosome					0				COAD - Colon adenocarcinoma(228;0.157)		CACAGGCTTCTTTTTCCCTGC	0.443													3	183					0	0	1	0	0
SPEM1	374768	broad.mit.edu	37	17	7324917	7324917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:7324917G>A	uc002ggv.2	+	3	948	c.923G>A	c.(922-924)GGG>GAG	p.G308E	FGF11_uc010vtw.1_Missense_Mutation_p.G42E	NM_199339	NP_955371	Q8N4L4	SPEM1_HUMAN	spermatid maturation 1	308					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|integral to membrane					0		Prostate(122;0.173)				TCCCTAACTGGGAGGTGACTG	0.582													11	22					0	0	1	0	0
CHRNB1	1140	broad.mit.edu	37	17	7350834	7350834	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:7350834C>T	uc002ghb.2	+	6	516	c.475C>T	c.(475-477)CCC>TCC	p.P159S	CHRNB1_uc010vty.1_Missense_Mutation_p.P87S|CHRNB1_uc010vtz.1_5'UTR	NM_000747	NP_000738	P11230	ACHB_HUMAN	nicotinic acetylcholine receptor beta 1 subunit	159	Extracellular (Potential).				behavioral response to nicotine|muscle contraction|muscle fiber development|neuromuscular synaptic transmission|postsynaptic membrane organization|regulation of membrane potential|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine binding|receptor activity			ovary(2)	2		Prostate(122;0.157)				CACCTACTTCCCCTTCGACTG	0.587													18	86					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7660446	7660446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:7660446G>A	uc002giu.1	+	12	1956	c.1942G>A	c.(1942-1944)GAG>AAG	p.E648K		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	648	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TGACTACTGGGAGCGGCTGCT	0.542													91	247					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7727622	7727622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:7727622G>A	uc002giu.1	+	75	11676	c.11662G>A	c.(11662-11664)GGA>AGA	p.G3888R	DNAH2_uc010cnm.1_Missense_Mutation_p.G826R	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3888	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TGTGACTCAGGGTTGGTGTCC	0.617													23	20					0	0	1	0	0
CNTROB	116840	broad.mit.edu	37	17	7846733	7846733	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:7846733C>T	uc002gjq.2	+	11	2255	c.1336C>T	c.(1336-1338)CAG>TAG	p.Q446*	CNTROB_uc002gjp.2_Nonsense_Mutation_p.Q446*|CNTROB_uc002gjr.2_Nonsense_Mutation_p.Q348*|CNTROB_uc010vum.1_Nonsense_Mutation_p.Q158*	NM_053051	NP_444279	Q8N137	CNTRB_HUMAN	centrobin, centrosomal BRCA2 interacting protein	446	Potential.|Required for centrosome localization.				centriole replication|centrosome separation|cytokinesis	centriole	protein domain specific binding			breast(1)|central_nervous_system(1)	2		Prostate(122;0.173)				CCAGCGGATCCAGCTGGAGTC	0.592													36	31					0	0	1	0	0
SPDYE4	388333	broad.mit.edu	37	17	8656650	8656650	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:8656650C>T	uc010cnz.1	-	5	820	c.643G>A	c.(643-645)GAG>AAG	p.E215K		NM_001128076	NP_001121548	A6NLX3	SPDE4_HUMAN	speedy homolog E4	215											0						TCCTCCATCTCCTCTGGGGAA	0.612													3	5					0	0	1	0	0
DHRS7C	201140	broad.mit.edu	37	17	9683185	9683185	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:9683185C>T	uc010vvb.1	-	3	438	c.438G>A	c.(436-438)AAG>AAA	p.K146K	DHRS7C_uc010cof.2_Silent_p.K145K	NM_001105571	NP_001099041	A6NNS2	DRS7C_HUMAN	dehydrogenase/reductase (SDR family) member 7C	146						extracellular region	binding|oxidoreductase activity				0						CATCCATGATCTTTTTGTCGA	0.493													11	10					0	0	1	0	0
GAS7	8522	broad.mit.edu	37	17	9828803	9828803	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:9828803G>A	uc002gmg.1	-	11	1289	c.1128C>T	c.(1126-1128)TCC>TCT	p.S376S	GAS7_uc010vvc.1_Silent_p.S190S|GAS7_uc002gmh.1_Silent_p.S236S|GAS7_uc010vvd.1_Silent_p.S328S|GAS7_uc002gmi.2_Silent_p.S312S|GAS7_uc002gmj.1_Silent_p.S316S|GAS7_uc010coh.1_Silent_p.S316S	NM_201433	NP_958839	O60861	GAS7_HUMAN	growth arrest-specific 7 isoform c	376	Potential.				cell cycle arrest	cytoplasm	sequence-specific DNA binding transcription factor activity			lung(1)|pancreas(1)	2						CAGCCTGTGTGGACTTTCTCC	0.597			T	MLL	AML*						OREG0024170	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	51	179					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10366251	10366251	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:10366251G>A	uc002gmn.2	-	11	1050	c.939C>T	c.(937-939)TTC>TTT	p.F313F	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	313	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGACAAATGCGAAGTCATATG	0.408													41	56					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10401153	10401153	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:10401153C>T	uc002gmo.2	-	31	4357	c.4263G>A	c.(4261-4263)ACG>ACA	p.T1421T	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1421	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GCCTCTGCTTCGTCTTCTCAA	0.473													25	72					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10435015	10435015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:10435015C>T	uc010coi.2	-	22	2760	c.2632G>A	c.(2632-2634)GAA>AAA	p.E878K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E878K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	878	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TCTTCCAGTTCCTTCCTTTTT	0.423													24	59					0	0	1	0	0
SCO1	6341	broad.mit.edu	37	17	10590151	10590151	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:10590151G>A	uc002gmr.3	-	5	725	c.664C>T	c.(664-666)CCC>TCC	p.P222S	SCO1_uc002gms.3_Missense_Mutation_p.P191S	NM_004589	NP_004580	O75880	SCO1_HUMAN	cytochrome oxidase deficient homolog 1	222					cellular copper ion homeostasis|copper ion transport|generation of precursor metabolites and energy|respiratory chain complex IV assembly	mitochondrial inner membrane	copper ion binding				0						ACCAGTTTGGGAGAAAATTCT	0.423													18	66					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11648316	11648316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:11648316G>A	uc002gne.2	+	31	6382	c.6314G>A	c.(6313-6315)CGG>CAG	p.R2105Q	DNAH9_uc010coo.2_Missense_Mutation_p.R1399Q	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2105					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GATGTCCCCCGGAGGAGAGAC	0.537													21	66					0	0	1	0	0
RICH2	9912	broad.mit.edu	37	17	12819292	12819292	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:12819292G>A	uc002gnr.3	+	5	678	c.351G>A	c.(349-351)GAG>GAA	p.E117E	RICH2_uc010vvk.1_Silent_p.E117E|RICH2_uc010vvl.1_Silent_p.E117E|RICH2_uc002gns.3_5'UTR|RICH2_uc010vvm.1_Silent_p.E117E|RICH2_uc010vvn.1_RNA	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	117	BAR.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						TGCAAGTAGAGAGAGACGTGA	0.517													10	34					0	0	1	0	0
ELAC2	60528	broad.mit.edu	37	17	12898338	12898338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:12898338G>A	uc002gnz.3	-	20	1945	c.1850C>T	c.(1849-1851)TCC>TTC	p.S617F	ELAC2_uc002gnu.3_Missense_Mutation_p.S14F|ELAC2_uc002gnv.3_Missense_Mutation_p.S245F|ELAC2_uc002gnw.3_Missense_Mutation_p.S275F|ELAC2_uc002gnx.3_Missense_Mutation_p.S377F|ELAC2_uc010vvo.1_Missense_Mutation_p.S415F|ELAC2_uc010vvp.1_Missense_Mutation_p.S598F|ELAC2_uc010vvq.1_Missense_Mutation_p.S616F|ELAC2_uc010vvr.1_Missense_Mutation_p.S577F	NM_018127	NP_060597	Q9BQ52	RNZ2_HUMAN	elaC homolog 2 isoform 1	617					tRNA processing	nucleus	endonuclease activity|metal ion binding|protein binding				0						TGCAGGACTGGAGATCTCAGC	0.468									Hereditary_Prostate_Cancer				157	127					0	0	1	0	0
HS3ST3A1	9955	broad.mit.edu	37	17	13399547	13399547	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:13399547C>T	uc002gob.1	-	2	1986	c.1188G>A	c.(1186-1188)CAG>CAA	p.Q396Q		NM_006042	NP_006033	Q9Y663	HS3SA_HUMAN	heparan sulfate D-glucosaminyl	396	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity			ovary(1)|central_nervous_system(1)	2		all_lung(20;0.114)		UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GCCCGGTCATCTGGTAGAACT	0.453													29	68					0	0	1	0	0
PMP22	5376	broad.mit.edu	37	17	15162439	15162439	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:15162439G>A	uc002goj.2	-	2	199	c.150C>T	c.(148-150)GTC>GTT	p.V50V	PMP22_uc002gok.2_Silent_p.V50V|PMP22_uc002gol.2_Silent_p.V50V	NM_153322	NP_696997	Q01453	PMP22_HUMAN	peripheral myelin protein 22	50					peripheral nervous system development|synaptic transmission	integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0884)|BRCA - Breast invasive adenocarcinoma(8;4.92e-06)		AACAGTGGTGGACATTTCCTG	0.498													17	52					0	0	1	0	0
ZNF286A	57335	broad.mit.edu	37	17	15604484	15604484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:15604484C>T	uc010cot.2	+	3	452	c.56C>T	c.(55-57)TCT>TTT	p.S19F	ZNF286A_uc002goz.3_5'UTR|ZNF286A_uc010vwa.1_Missense_Mutation_p.S19F|ZNF286A_uc002gpa.2_Missense_Mutation_p.S19F	NM_001130842	NP_001124314	Q9HBT8	Z286A_HUMAN	zinc finger protein 286	19					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)|READ - Rectum adenocarcinoma(1115;0.0222)|BRCA - Breast invasive adenocarcinoma(8;0.0781)		TCCCAGGATTCTCCCCATTTC	0.473													73	368					0	0	1	0	0
RAI1	10743	broad.mit.edu	37	17	17699839	17699839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:17699839C>T	uc002grm.2	+	3	4046	c.3577C>T	c.(3577-3579)CCC>TCC	p.P1193S	RAI1_uc002grn.1_Missense_Mutation_p.P1193S	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	1193						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		CTCCAGCAGCCCCCAGAAGGA	0.662													39	36					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18061077	18061077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:18061077C>T	uc010vxh.1	+	50	9168	c.8830C>T	c.(8830-8832)CCT>TCT	p.P2944S	MYO15A_uc010vxi.1_Missense_Mutation_p.P208S|MYO15A_uc010vxk.1_5'UTR|MYO15A_uc010vxl.1_5'UTR|MYO15A_uc002gsl.2_5'Flank|MYO15A_uc010vxm.1_5'Flank|MYO15A_uc002gsm.1_5'Flank	NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	2944	Tail.|SH3.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					GGGCCGCTTCCCTTCGGAGCT	0.687													35	34					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	20405846	20405846	+	RNA	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:20405846G>A	uc002gxb.2	-	5		c.1173C>T								Homo sapiens similar to Keratin, type I cytoskeletal 16 (Cytokeratin-16) (CK-16) (Keratin-16) (K16), mRNA (cDNA clone IMAGE:4752428).																		TTGTTGAGGGGGTGGTGGCCA	0.527													12	50					0	0	1	0	0
FLJ40504	284085	broad.mit.edu	37	17	26603815	26603815	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:26603815G>A	uc002has.3	-	3	756	c.660C>T	c.(658-660)CTC>CTT	p.L220L		NM_173624	NP_775895			SubName: Full=Putative uncharacterized protein FLJ40504; SubName: Full=cDNA FLJ40504 fis, clone TESTI2045509, highly similar to KERATIN, TYPE I CYTOSKELETAL 18;												0	all_lung(13;0.000238)|Lung NSC(42;0.000789)			UCEC - Uterine corpus endometrioid carcinoma (53;0.155)		TGACCTTGTGGAGCCCATGGA	0.502													25	14					0	0	1	0	0
SEZ6	124925	broad.mit.edu	37	17	27285068	27285068	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:27285068C>T	uc002hdp.2	-	11	2393	c.2199G>A	c.(2197-2199)GTG>GTA	p.V733V	SEZ6_uc010crx.1_5'Flank|SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Silent_p.V733V|SEZ6_uc002hdq.1_Silent_p.V608V	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	733	Extracellular (Potential).|Sushi 3.					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			GGTAAGTGACCACGGTGCCGT	0.607													25	81					0	0	1	0	0
EFCAB5	374786	broad.mit.edu	37	17	28378135	28378135	+	Splice_Site	SNP	G	A	A	rs35119577		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:28378135G>A	uc002het.2	+	9	1393	c.1201_splice	c.e9-1	p.V401_splice	EFCAB5_uc010wbi.1_Splice_Site_p.V144_splice|EFCAB5_uc010wbj.1_Splice_Site_p.V345_splice|EFCAB5_uc010wbk.1_Splice_Site_p.V58_splice|EFCAB5_uc010csd.2_Splice_Site|EFCAB5_uc010cse.2_Splice_Site_p.V280_splice|EFCAB5_uc010csf.2_Splice_Site_p.V280_splice	NM_198529	NP_940931	A4FU69	EFCB5_HUMAN	EF-hand calcium binding domain 5 isoform a								calcium ion binding			ovary(1)|skin(1)	2						TCTTTGCTTAGGTAGGGTTTT	0.393													20	18					0	0	1	0	0
SLC6A4	6532	broad.mit.edu	37	17	28544272	28544272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:28544272C>T	uc002hey.3	-	6	1293	c.749G>A	c.(748-750)GGC>GAC	p.G250D		NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	250	Extracellular (Potential).				response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	CCAGCTGATGCCCCCCAGGTC	0.582													26	71					0	0	1	0	0
TMEM98	26022	broad.mit.edu	37	17	31267970	31267970	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:31267970C>T	uc002hhq.2	+	8	1098	c.640C>T	c.(640-642)CCA>TCA	p.P214S	TMEM98_uc002hhr.2_Missense_Mutation_p.P214S	NM_015544	NP_056359	Q9Y2Y6	TMM98_HUMAN	transmembrane protein 98	214						endoplasmic reticulum|integral to membrane					0		Ovarian(249;0.182)|Breast(31;0.244)	BRCA - Breast invasive adenocarcinoma(9;0.0769)			TAAAGGCCTCCCAGGCCCTGA	0.597													16	14					0	0	1	0	0
SPACA3	124912	broad.mit.edu	37	17	31322709	31322709	+	Missense_Mutation	SNP	G	A	A	rs149695417		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:31322709G>A	uc002hhs.1	+	2	392	c.317G>A	c.(316-318)GGA>GAA	p.G106E	SPACA3_uc010cte.1_RNA	NM_173847	NP_776246	Q8IXA5	SACA3_HUMAN	sperm acrosome associated 3	106	Extracellular (Potential).				cell wall macromolecule catabolic process|defense response to Gram-positive bacterium|monocyte activation|peptidoglycan catabolic process|positive regulation of macrophage activation|positive regulation of phagocytosis|response to virus	acrosomal membrane|extracellular region|integral to membrane|lysosome	bacterial cell surface binding|lysozyme activity|protein binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.193)			GGGCTGGACGGATACCGGGGA	0.522													9	26					0	0	1	0	0
SPACA3	124912	broad.mit.edu	37	17	31323938	31323938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:31323938G>A	uc002hhs.1	+	3	496	c.421G>A	c.(421-423)GGG>AGG	p.G141R	SPACA3_uc010cte.1_RNA	NM_173847	NP_776246	Q8IXA5	SACA3_HUMAN	sperm acrosome associated 3	141	Extracellular (Potential).				cell wall macromolecule catabolic process|defense response to Gram-positive bacterium|monocyte activation|peptidoglycan catabolic process|positive regulation of macrophage activation|positive regulation of phagocytosis|response to virus	acrosomal membrane|extracellular region|integral to membrane|lysosome	bacterial cell surface binding|lysozyme activity|protein binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.193)			CACCAACAACGGGATCTTCCA	0.592													49	90					0	0	1	0	0
TMEM132E	124842	broad.mit.edu	37	17	32959914	32959914	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:32959914C>T	uc002hif.2	+	7	1732	c.1404C>T	c.(1402-1404)ATC>ATT	p.I468I		NM_207313	NP_997196	Q6IEE7	T132E_HUMAN	transmembrane protein 132E precursor	468	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(366;0.231)		GGGTACCTATCCTCCCCGACC	0.582													41	129					0	0	1	0	0
C17orf66	256957	broad.mit.edu	37	17	34190548	34190548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:34190548C>T	uc002hke.1	-	7	732	c.583G>A	c.(583-585)GAG>AAG	p.E195K	C17orf66_uc010wck.1_RNA|C17orf66_uc010wcl.1_Missense_Mutation_p.E155K|C17orf66_uc010wcm.1_Missense_Mutation_p.E161K	NM_152781	NP_689994	A2RTY3	CQ066_HUMAN	hypothetical protein LOC256957	195							binding			breast(2)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		TTCACTTTCTCTGGACCAGTT	0.373													47	49					0	0	1	0	0
CDK12	51755	broad.mit.edu	37	17	37687013	37687013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:37687013C>T	uc010cvv.2	+	14	4503	c.3917C>T	c.(3916-3918)TCC>TTC	p.S1306F	CDK12_uc002hrw.3_Missense_Mutation_p.S1297F	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	1306					mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						CAACTTTTATCCCAGCCTGAA	0.617										TCGA Ovarian(9;0.13)			50	197					0	0	1	0	0
THRA	7067	broad.mit.edu	37	17	38244579	38244579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:38244579G>A	uc002htw.2	+	8	1291	c.808G>A	c.(808-810)GAG>AAG	p.E270K	THRA_uc010cwp.1_Missense_Mutation_p.E270K|THRA_uc002htv.2_Missense_Mutation_p.E270K|THRA_uc002htx.2_Missense_Mutation_p.E270K	NM_003250	NP_003241	P10827	THA_HUMAN	thyroid hormone receptor, alpha isoform 2	270	Ligand-binding.				negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of transcription initiation, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter	cytosol|nucleoplasm	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|TBP-class protein binding|thyroid hormone binding|thyroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding				0	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Levothyroxine(DB00451)|Liothyronine(DB00279)	CTACGACCCTGAGAGCGACAC	0.632													56	53					0	0	1	0	0
KRT20	54474	broad.mit.edu	37	17	39041266	39041266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:39041266C>T	uc002hvl.2	-	1	214	c.172G>A	c.(172-174)GAT>AAT	p.D58N		NM_019010	NP_061883	P35900	K1C20_HUMAN	keratin 20	58	Head.				apoptosis|intermediate filament organization	Golgi apparatus|intermediate filament	protein binding|structural constituent of cytoskeleton			large_intestine(1)|kidney(1)|skin(1)	3		Breast(137;0.000301)|Ovarian(249;0.15)				CCTGTGAGATCGCTCCCATAG	0.592													62	54					0	0	1	0	0
KRTAP9-9	81870	broad.mit.edu	37	17	39411779	39411779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:39411779C>T	uc010wfq.1	+	2	159	c.157C>T	c.(157-159)CGC>TGC	p.R53C		NM_030975	NP_112237	B5MDD6	B5MDD6_HUMAN	keratin associated protein 9-9	48						keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000397)			GCCTTGCTGCCGCCCAGCTTG	0.642													32	59					0	0	1	0	0
KRT16	3868	broad.mit.edu	37	17	39768561	39768561	+	Missense_Mutation	SNP	C	A	A	rs57424749		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:39768561C>A	uc002hxg.3	-	1	519	c.380G>T	c.(379-381)CGC>CTC	p.R127L	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	127	Coil 1A.|Rod.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				GGAGGCCAGGCGGTCATTGAG	0.453													26	92					5.34276e-22	5.39837e-22	1	1	0
AARSD1	80755	broad.mit.edu	37	17	41131632	41131632	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:41131632C>T	uc002icf.2	-	3	404	c.186G>A	c.(184-186)ATG>ATA	p.M62I	AARSD1_uc002icd.2_Missense_Mutation_p.M1I|AARSD1_uc002ice.2_Missense_Mutation_p.M1I|AARSD1_uc010whg.1_Missense_Mutation_p.M62I|AARSD1_uc002icg.2_Intron|AARSD1_uc002ich.2_Intron|AARSD1_uc010whh.1_Missense_Mutation_p.M62I|RUNDC1_uc002ici.1_5'Flank|RUNDC1_uc010whi.1_5'Flank	NM_025267	NP_079543	Q9BTE6	AASD1_HUMAN	alanyl-tRNA synthetase domain containing 1	Error:Variant_position_missing_in_Q9BTE6_after_alignment					alanyl-tRNA aminoacylation	cytoplasm	alanine-tRNA ligase activity|ATP binding|metal ion binding|nucleic acid binding				0		Breast(137;0.00499)		BRCA - Breast invasive adenocarcinoma(366;0.161)		CACAAAACTCCATGAACACAT	0.572													27	21					0	0	1	0	0
DHX8	1659	broad.mit.edu	37	17	41571226	41571226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:41571226C>T	uc002idu.1	+	8	1257	c.1184C>T	c.(1183-1185)TCT>TTT	p.S395F	DHX8_uc010wif.1_Missense_Mutation_p.S304F|DHX8_uc010wig.1_Missense_Mutation_p.S395F	NM_004941	NP_004932	Q14562	DHX8_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 8	395						catalytic step 2 spliceosome	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|pancreas(1)	4		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.08)		ACCCGAATCTCTGACCCAGAG	0.433													29	86					0	0	1	0	0
NAGS	162417	broad.mit.edu	37	17	42084743	42084744	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:42084743_42084744GG>AA	uc002ies.2	+	5	1149_1150	c.1149_1150GG>AA	c.(1147-1152)CTGGAC>CTAAAC	p.D384N	PYY_uc002ieq.2_5'Flank|NAGS_uc010czn.2_Missense_Mutation_p.D384N|NAGS_uc002iet.2_Missense_Mutation_p.D8N	NM_153006	NP_694551	Q8N159	NAGS_HUMAN	N-acetylglutamate synthase	384	N-acetyltransferase.				arginine biosynthetic process|urea cycle	mitochondrial matrix	acetyl-CoA:L-glutamate N-acetyltransferase activity				0		Breast(137;0.00536)|Prostate(33;0.0724)		BRCA - Breast invasive adenocarcinoma(366;0.113)	L-Glutamic Acid(DB00142)	TGCGCAGCCTGGACAAGCTGGA	0.668											OREG0024449	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	26					0	0	1	0	0
SLC4A1	6521	broad.mit.edu	37	17	42335499	42335499	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:42335499G>A	uc002igf.3	-	11	1286	c.1137C>T	c.(1135-1137)TTC>TTT	p.F379F	SLC4A1_uc002igg.3_Silent_p.F379F	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	379	Cytoplasmic.				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		CCAGGCCCCCGAAGAGCTGGC	0.587													36	117					0	0	1	0	0
ARHGAP27	201176	broad.mit.edu	37	17	43473622	43473622	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:43473622G>A	uc002iix.2	-	14	1628	c.1179C>T	c.(1177-1179)ATC>ATT	p.I393I	ARHGAP27_uc010dak.2_Silent_p.I366I	NM_199282	NP_954976	Q6ZUM4	RHG27_HUMAN	Rho GTPase activating protein 27 isoform a	734	Rho-GAP.				positive regulation of Cdc42 GTPase activity|receptor-mediated endocytosis|signal transduction	cytoplasm|membrane	Rac GTPase activator activity|SH3 domain binding				0	Renal(3;0.0405)					GGTTTCCACTGATGCGGTACA	0.652													27	26					0	0	1	0	0
KPNB1	3837	broad.mit.edu	37	17	45735996	45735996	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:45735996G>A	uc002ilt.1	+	5	942	c.606G>A	c.(604-606)TTG>TTA	p.L202L	KPNB1_uc010wkw.1_Silent_p.L57L|KPNB1_uc010wkx.1_Silent_p.L57L	NM_002265	NP_002256	Q14974	IMB1_HUMAN	karyopherin beta 1	202	HEAT 2.				DNA fragmentation involved in apoptotic nuclear change|NLS-bearing substrate import into nucleus|protein import into nucleus, translocation|ribosomal protein import into nucleus|viral genome transport in host cell|viral infectious cycle	cytosol|nuclear pore|nucleoplasm	nuclear localization sequence binding|protein domain specific binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TGAACTCATTGGAGTTCACCA	0.378													40	41					0	0	1	0	0
PNPO	55163	broad.mit.edu	37	17	46022934	46022934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:46022934C>T	uc002imo.2	+	4	526	c.373C>T	c.(373-375)CCC>TCC	p.P125S	PNPO_uc010wkz.1_Intron|PNPO_uc010wla.1_Missense_Mutation_p.P30S|PNPO_uc010wlb.1_Missense_Mutation_p.P125S	NM_018129	NP_060599	Q9NVS9	PNPO_HUMAN	pyridoxine 5'-phosphate oxidase	125					pyridoxine biosynthetic process	cytosol	FMN binding|pyridoxamine-phosphate oxidase activity				0					Pyridoxal Phosphate(DB00114)	GGACTCTAATCCCTTTGCTTC	0.557													31	100					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48266155	48266155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:48266155C>T	uc002iqm.2	-	42	3173	c.3047G>A	c.(3046-3048)GGG>GAG	p.G1016E		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	1016	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	ACCAGGAGCCCCCTGCAGAGA	0.612			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						25	64					0	0	1	0	0
TEX14	56155	broad.mit.edu	37	17	56676346	56676346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:56676346G>A	uc010dcz.1	-	14	2496	c.2378C>T	c.(2377-2379)GCC>GTC	p.A793V	TEX14_uc002iwr.1_Missense_Mutation_p.A787V|TEX14_uc002iws.1_Missense_Mutation_p.A787V|TEX14_uc010dda.1_Missense_Mutation_p.A567V	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	793						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					AGGGCCCACGGCCAGAGGTAA	0.468													61	41					0	0	1	0	0
HEATR6	63897	broad.mit.edu	37	17	58145077	58145077	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:58145077G>A	uc002iyk.1	-	8	973	c.956C>T	c.(955-957)TCC>TTC	p.S319F	HEATR6_uc010ddk.1_5'Flank|HEATR6_uc010wos.1_Missense_Mutation_p.S151F	NM_022070	NP_071353	Q6AI08	HEAT6_HUMAN	HEAT repeat containing 6	319	Poly-Lys.						binding			ovary(1)|skin(1)	2	all_cancers(5;2.25e-13)|Breast(5;4.84e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		BRCA - Breast invasive adenocarcinoma(1;5.93e-19)|Epithelial(12;7.59e-12)|all cancers(12;1.26e-10)			TTTTACTTTGGATTTTTTCTT	0.388													35	32					0	0	1	0	0
USP32	84669	broad.mit.edu	37	17	58258686	58258686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:58258686G>A	uc002iyo.1	-	32	4833	c.4547C>T	c.(4546-4548)TCG>TTG	p.S1516L	USP32_uc002iyn.1_Missense_Mutation_p.S1186L	NM_032582	NP_115971	Q8NFA0	UBP32_HUMAN	ubiquitin specific protease 32	1516					protein deubiquitination|ubiquitin-dependent protein catabolic process	Golgi apparatus|membrane	calcium ion binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|breast(2)|large_intestine(1)	5	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;2.02e-11)|all cancers(12;5.23e-10)|Colorectal(3;0.198)			ACCACTTACCGAAATTGCATA	0.363													22	64					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	58511493	58511493	+	RNA	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:58511493G>A	uc002iyr.1	-	1		c.1865C>T								Homo sapiens cDNA FLJ33664 fis, clone BRAMY2027451, moderately similar to 60S RIBOSOMAL PROTEIN L12.																		GGCCGATCTTGGGGGCCAGGG	0.572													12	9					0	0	1	0	0
DCAF7	10238	broad.mit.edu	37	17	61666411	61666411	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:61666411C>T	uc002jbc.2	+	8	1123	c.906C>T	c.(904-906)GCC>GCT	p.A302A	DCAF7_uc002jbb.2_RNA|DCAF7_uc010wpn.1_Silent_p.A102A	NM_005828	NP_005819	P61962	DCAF7_HUMAN	WD-repeat protein	302	WD 4.				multicellular organismal development	CUL4 RING ubiquitin ligase complex|cytoplasm|nucleus	protein binding			ovary(1)	1						TGCCCCGAGCCATTGAGGACC	0.542													15	44					0	0	1	0	0
CSHL1	1444	broad.mit.edu	37	17	61987166	61987166	+	Missense_Mutation	SNP	C	T	T	rs149151535		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:61987166C>T	uc002jda.1	-	5	636	c.574G>A	c.(574-576)GGG>AGG	p.G192R	CSHL1_uc002jcz.1_Missense_Mutation_p.G169R|CSHL1_uc002jdb.1_Missense_Mutation_p.G98R|CSHL1_uc002jdc.1_Missense_Mutation_p.G109R|CSHL1_uc002jdd.1_Missense_Mutation_p.G130R|CSHL1_uc002jde.2_3'UTR|CSHL1_uc002jdf.2_3'UTR|CSHL1_uc002jdg.2_3'UTR|CSHL1_uc002jdh.2_3'UTR	NM_022579	NP_072101	Q14406	CSHL_HUMAN	chorionic somatomammotropin hormone-like 1	192						extracellular region	hormone activity|metal ion binding				0						TGGAGCAGCCCGTAGTTCTTG	0.587													69	160					0	0	1	0	0
SMURF2	64750	broad.mit.edu	37	17	62557655	62557655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:62557655G>A	uc002jep.1	-	12	1667	c.1279C>T	c.(1279-1281)CGT>TGT	p.R427C	SMURF2_uc002jeq.1_Missense_Mutation_p.R186C|SMURF2_uc002jer.1_Missense_Mutation_p.R186C	NM_022739	NP_073576	Q9HAU4	SMUF2_HUMAN	SMAD specific E3 ubiquitin protein ligase 2	427	HECT.				BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|membrane raft|nucleus|plasma membrane|ubiquitin ligase complex	identical protein binding|SMAD binding|ubiquitin-protein ligase activity			skin(3)|lung(1)	4	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;9.88e-12)			TCTTCTCCACGAAATTTTATC	0.363													18	25					0	0	1	0	0
BPTF	2186	broad.mit.edu	37	17	65907493	65907493	+	Nonsense_Mutation	SNP	C	T	T	rs145463211		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:65907493C>T	uc002jgf.2	+	11	3554	c.3493C>T	c.(3493-3495)CGA>TGA	p.R1165*	BPTF_uc002jge.2_Nonsense_Mutation_p.R1291*	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	1291					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding	p.R1165*(1)		ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			TCCAAAAGATCGAGTGTTAGA	0.393													11	39					0	0	1	0	0
SDK2	54549	broad.mit.edu	37	17	71354263	71354263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:71354263C>T	uc010dfm.2	-	40	5548	c.5548G>A	c.(5548-5550)GGC>AGC	p.G1850S	SDK2_uc002jjt.3_Missense_Mutation_p.G990S|SDK2_uc010dfn.2_Missense_Mutation_p.G1529S	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1850	Fibronectin type-III 13.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						GGCCCTTTGCCCGGGTCTCCG	0.647													90	98					0	0	1	0	0
C17orf28	283987	broad.mit.edu	37	17	72954515	72954515	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:72954515C>T	uc002jmj.3	-	11	1448	c.1299G>A	c.(1297-1299)CGG>CGA	p.R433R	C17orf28_uc010wrs.1_Silent_p.R232R	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	433	Helical; (Potential).					integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					CCCCGAAGTTCCGCTCCCCGC	0.637											OREG0024721	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	17					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74004679	74004679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:74004679C>T	uc002jqi.2	-	22	4835	c.4607G>A	c.(4606-4608)CGG>CAG	p.R1536Q	EVPL_uc010wss.1_Missense_Mutation_p.R1558Q|EVPL_uc010wst.1_Missense_Mutation_p.R1006Q	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1536	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CACGCGGGCCCGCTCATCTTC	0.657													27	27					0	0	1	0	0
PGS1	9489	broad.mit.edu	37	17	76411014	76411014	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:76411014C>A	uc002jvm.2	+	8	1469	c.1457C>A	c.(1456-1458)TCT>TAT	p.S486Y	PGS1_uc010wtt.1_RNA|PGS1_uc010dho.2_RNA|PGS1_uc002jvn.2_Missense_Mutation_p.S199Y|PGS1_uc002jvo.2_Intron|PGS1_uc002jvp.1_Missense_Mutation_p.S199Y	NM_024419	NP_077733	Q32NB8	PGPS1_HUMAN	phosphatidylglycerophosphate synthase 1	486	PLD phosphodiesterase 2.				phospholipid biosynthetic process	endoplasmic reticulum|mitochondrion	ATP binding|CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity				0			BRCA - Breast invasive adenocarcinoma(99;0.00144)|OV - Ovarian serous cystadenocarcinoma(97;0.031)			CTGATTGGCTCTCCTAATTTT	0.587													50	35					1.72845e-40	1.7513e-40	1	1	0
GAA	2548	broad.mit.edu	37	17	78078436	78078437	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:78078436_78078437CC>TA	uc002jxo.2	+	3	233_234	c.51_52CC>TA	c.(49-54)GCCCTC>GCTATC	p.L18I	GAA_uc002jxp.2_Missense_Mutation_p.L18I|GAA_uc002jxq.2_Missense_Mutation_p.L18I	NM_001079803	NP_001073271	P10253	LYAG_HUMAN	acid alpha-glucosidase preproprotein	18					cardiac muscle contraction|diaphragm contraction|glycogen catabolic process|lysosome organization|tongue morphogenesis|vacuolar sequestering|ventricular cardiac muscle tissue morphogenesis	lysosomal membrane	carbohydrate binding|maltose alpha-glucosidase activity			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)		Acarbose(DB00284)	CCGTCTGCGCCCTCGTGTCCTT	0.649													15	40					0	0	1	0	0
AATK	9625	broad.mit.edu	37	17	79094850	79094850	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:79094850G>A	uc010dia.2	-	11	2966	c.2886C>T	c.(2884-2886)GCC>GCT	p.A962A	AATK_uc010dhz.2_Intron	NM_001080395	NP_001073864	Q6ZMQ8	LMTK1_HUMAN	apoptosis-associated tyrosine kinase	962						integral to membrane|mitochondrion|perinuclear region of cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(4)|ovary(2)|lung(2)|upper_aerodigestive_tract(1)	9	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			GCTCCGCAAAGGCCTGGGGCT	0.642													6	25					0	0	1	0	0
ASPSCR1	79058	broad.mit.edu	37	17	79954604	79954604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr17:79954604C>T	uc002kcx.2	+	7	912	c.815C>T	c.(814-816)TCC>TTC	p.S272F	ASPSCR1_uc002kcw.1_Missense_Mutation_p.S272F|ASPSCR1_uc002kcy.2_Missense_Mutation_p.S272F|ASPSCR1_uc002kcz.2_Intron|ASPSCR1_uc002kda.2_Missense_Mutation_p.S195F|ASPSCR1_uc002kdb.1_Missense_Mutation_p.S195F	NM_024083	NP_076988	Q9BZE9	ASPC1_HUMAN	alveolar soft part sarcoma chromosome region,	272							protein binding		ASPSCR1/TFE3(161)	soft_tissue(118)|kidney(43)|breast(1)	162	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			TTGCCGAAGTCCCTCTCCAGC	0.507			T	TFE3	alveolar soft part sarcoma								17	54					0	0	1	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14763875	14763875	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:14763875G>A	uc010dlo.2	+	7	1191	c.1011G>A	c.(1009-1011)AGG>AGA	p.R337R	ANKRD30B_uc010xak.1_RNA	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	337										ovary(1)|skin(1)	2						AAACACCTAGGAAAATTTTGA	0.418													7	4					0	0	1	0	0
LOC644669	644669	broad.mit.edu	37	18	15316703	15316703	+	RNA	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:15316703C>T	uc002ktd.1	-	5		c.331G>A				NR_027417				Homo sapiens cDNA FLJ40312 fis, clone TESTI2029880.												0						AGCTTTCAGCCGTGTCAGGTG	0.423													4	8					0	0	1	0	0
SS18	6760	broad.mit.edu	37	18	23612379	23612379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:23612379G>A	uc002kvm.2	-	10	1292	c.1214C>T	c.(1213-1215)CCT>CTT	p.P405L	SS18_uc002kvn.2_Missense_Mutation_p.P374L|SS18_uc010xbf.1_Missense_Mutation_p.P323L|SS18_uc010xbg.1_Missense_Mutation_p.P322L|SS18_uc010xbh.1_Missense_Mutation_p.P322L|SS18_uc010xbi.1_Missense_Mutation_p.P382L	NM_001007559	NP_001007560	Q15532	SSXT_HUMAN	synovial sarcoma translocation, chromosome 18	405	Gln-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	ligand-dependent nuclear receptor transcription coactivator activity|protein binding		SS18/SSX1(1169)|SS18/SSX2(702)|SS18/SSX4(12)	soft_tissue(1883)|ovary(1)	1884	all_cancers(21;0.000194)|Lung NSC(5;0.000413)|all_lung(6;0.00118)|Ovarian(20;0.124)					ATATCCATAAGGCCTCTGCTG	0.458			T	SSX1| SSX2	synovial sarcoma								43	79					0	0	1	0	0
CHST9	83539	broad.mit.edu	37	18	24496717	24496717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:24496717G>A	uc002kwd.2	-	5	1036	c.838C>T	c.(838-840)CGT>TGT	p.R280C	C18orf16_uc002kwb.2_Intron|C18orf16_uc010xbm.1_Intron|CHST9_uc002kwc.2_Missense_Mutation_p.R195C|CHST9_uc002kwe.2_Missense_Mutation_p.R280C	NM_031422	NP_113610	Q7L1S5	CHST9_HUMAN	GalNAc-4-sulfotransferase 2	280	Lumenal (Potential).|PAPS (By similarity).				carbohydrate biosynthetic process|glycosaminoglycan metabolic process|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	extracellular region|Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			ovary(2)|skin(1)	3	all_lung(6;0.0145)|Ovarian(20;0.124)					ATGGGATCACGAACAAACACA	0.388													35	61					0	0	1	0	0
DSC3	1825	broad.mit.edu	37	18	28611067	28611067	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:28611067C>T	uc002kwj.3	-	3	381	c.226G>A	c.(226-228)GAT>AAT	p.D76N	DSC3_uc002kwi.3_Missense_Mutation_p.D76N	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	76					homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			ACTGACCCATCATTTAGAACT	0.418													13	25					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28968963	28968963	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:28968963G>A	uc002kwq.2	+	5	634	c.499G>A	c.(499-501)GAA>AAA	p.E167K	DSG4_uc002kwr.2_Missense_Mutation_p.E167K	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	167	Cadherin 2.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AGCCAGCATTGAAGAAAATAG	0.403													9	33					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28972152	28972152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:28972152C>T	uc002kwq.2	+	8	989	c.854C>T	c.(853-855)TCG>TTG	p.S285L	DSG4_uc002kwr.2_Missense_Mutation_p.S285L	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	285	Cadherin 3.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TGTTTAAGTTCGGAACTGATA	0.338													11	45					0	0	1	0	0
DSG2	1829	broad.mit.edu	37	18	29102112	29102112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:29102112C>T	uc002kwu.3	+	6	778	c.590C>T	c.(589-591)TCC>TTC	p.S197F		NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	197	Extracellular (Potential).|Cadherin 2.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			TCGAAAATTTCCTATAGAATC	0.378													18	26					0	0	1	0	0
ZNF396	252884	broad.mit.edu	37	18	32948372	32948372	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:32948372C>T	uc010xcf.1	-	5	1077	c.945G>A	c.(943-945)AAG>AAA	p.K315K		NM_145756	NP_665699	Q96N95	ZN396_HUMAN	zinc finger protein 396	Error:Variant_position_missing_in_Q96N95_after_alignment					viral reproduction	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGTACATATTCTTTTGGGCCT	0.328													29	54					0	0	1	0	0
GALNT1	2589	broad.mit.edu	37	18	33234753	33234753	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:33234753C>T	uc010dmu.2	+	2	180	c.127C>T	c.(127-129)CCT>TCT	p.P43S	GALNT1_uc002kyz.3_5'UTR|GALNT1_uc002kza.2_Missense_Mutation_p.P43S|GALNT1_uc002kzb.2_Missense_Mutation_p.P43S	NM_020474	NP_065207	Q10472	GALT1_HUMAN	polypeptide N-acetylgalactosaminyltransferase 1	43	Lumenal (Potential).				protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						GAGAGGACTTCCTGCTGGAGA	0.353													15	32					0	0	1	0	0
RIT2	6014	broad.mit.edu	37	18	40613801	40613801	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:40613801G>A	uc002lav.2	-	2	308	c.135C>T	c.(133-135)TTC>TTT	p.F45F	RIT2_uc010dnf.2_Silent_p.F45F	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	45					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						GATAATCAGGGAACTGATGAC	0.318													12	31					0	0	1	0	0
PSTPIP2	9050	broad.mit.edu	37	18	43570718	43570718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:43570718C>T	uc002lbp.3	-	13	1021	c.925G>A	c.(925-927)GGA>AGA	p.G309R	PSTPIP2_uc002lbq.3_Silent_p.E276E	NM_024430	NP_077748	Q9H939	PPIP2_HUMAN	proline-serine-threonine phosphatase interacting	309						membrane				ovary(1)	1						GGGAGGGGTCCTCTCCTGTAA	0.274													13	22					0	0	1	0	0
C18orf26	284254	broad.mit.edu	37	18	52262207	52262207	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:52262207C>T	uc002lfq.1	+	2	219	c.173C>T	c.(172-174)TCC>TTC	p.S58F	C18orf26_uc002lfp.1_Intron	NM_173629	NP_775900	Q8N1N2	CR026_HUMAN	hypothetical protein LOC284254	58						integral to membrane					0				Colorectal(16;0.0193)|READ - Rectum adenocarcinoma(59;0.178)		GCTCACAGTTCCATATGCTGG	0.453													44	66					0	0	1	0	0
ST8SIA3	51046	broad.mit.edu	37	18	55024152	55024152	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:55024152T>G	uc002lgn.2	+	3	668	c.311T>G	c.(310-312)ATT>AGT	p.I104S		NM_015879	NP_056963	O43173	SIA8C_HUMAN	ST8 alpha-N-acetyl-neuraminide	104	Lumenal (Potential).				glycosphingolipid biosynthetic process|N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			breast(1)|skin(1)	2				READ - Rectum adenocarcinoma(59;0.19)|Colorectal(16;0.205)		AGGCAAGAAATTCTTCAGCAT	0.318													14	34					0	0	1	0	0
PHLPP1	23239	broad.mit.edu	37	18	60563057	60563058	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:60563057_60563058CC>TT	uc002lis.2	+	7	899_900	c.721_722CC>TT	c.(721-723)CCT>TTT	p.P241F		NM_194449	NP_919431	O60346	PHLP1_HUMAN	PH domain and leucine rich repeat protein	753	LRR 5.				apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol|membrane|nucleus	metal ion binding|protein serine/threonine phosphatase activity				0						CCAATCCCTTCCTGCTGAGTTG	0.342													37	153					0	0	1	0	0
SERPINB4	6318	broad.mit.edu	37	18	61306490	61306490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:61306490C>T	uc002ljf.2	-	7	783	c.697G>A	c.(697-699)GAA>AAA	p.E233K	SERPINB4_uc002lje.2_Missense_Mutation_p.E212K|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	233					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						TATGGTATTTCCAGGACCTTG	0.398													25	38					0	0	1	0	0
SERPINB4	6318	broad.mit.edu	37	18	61324073	61324073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:61324073G>A	uc002ljg.2	-	6	786	c.760C>T	c.(760-762)CTC>TTC	p.L254F	SERPINB3_uc002lji.2_Missense_Mutation_p.L254F|SERPINB3_uc010dqa.2_Intron			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	254					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						ACCTTCTGGAGACCATCGATT	0.428													44	166					0	0	1	0	0
SERPINB2	5055	broad.mit.edu	37	18	61569100	61569100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:61569100C>T	uc010xeu.1	+	7	995	c.662C>T	c.(661-663)CCT>CTT	p.P221L	SERPINB2_uc002ljo.2_Missense_Mutation_p.P221L|SERPINB2_uc010dqh.2_Missense_Mutation_p.P151L|SERPINB2_uc002ljp.1_Missense_Mutation_p.P26L|SERPINB2_uc002ljq.1_Missense_Mutation_p.P26L	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	221					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	GGGCTTTATCCTTTCCGTGTA	0.393													14	65					0	0	1	0	0
SERPINB10	5273	broad.mit.edu	37	18	61585212	61585212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:61585212G>A	uc010xev.1	+	4	338	c.248G>A	c.(247-249)AGC>AAC	p.S83N	SERPINB10_uc010xew.1_Missense_Mutation_p.S83N	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	83						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				TTCAACTTGAGCAACTCGGAA	0.338													21	16					0	0	1	0	0
CDH7	1005	broad.mit.edu	37	18	63477014	63477014	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:63477014C>T	uc002ljz.2	+	3	610	c.285C>T	c.(283-285)TTC>TTT	p.F95F	CDH7_uc002lka.2_Silent_p.F95F|CDH7_uc002lkb.2_Silent_p.F95F	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	95	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				GTTCCATTTTCATTATTGATG	0.468													19	93					0	0	1	0	0
CDH7	1005	broad.mit.edu	37	18	63477162	63477162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:63477162G>A	uc002ljz.2	+	3	758	c.433G>A	c.(433-435)GAT>AAT	p.D145N	CDH7_uc002lka.2_Missense_Mutation_p.D145N|CDH7_uc002lkb.2_Missense_Mutation_p.D145N	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	145	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				CAAAATTCAGGATATCAACGA	0.507													40	176					0	0	1	0	0
C18orf55	29090	broad.mit.edu	37	18	71816059	71816059	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:71816059C>T	uc010dqr.1	+	1	314	c.16C>T	c.(16-18)CTA>TTA	p.L6L	FBXO15_uc002lle.2_5'Flank|FBXO15_uc002llf.2_5'Flank	NM_014177	NP_054896	Q9BVV7	TI21L_HUMAN	hypothetical protein LOC29090 precursor	6					protein transport|transmembrane transport	integral to membrane|mitochondrial membrane					0		Esophageal squamous(42;0.0746)|Prostate(75;0.157)|Melanoma(33;0.211)				TTGTACTTTTCTACGAGCCGT	0.483													53	190					0	0	1	0	0
ZNF407	55628	broad.mit.edu	37	18	72347510	72347510	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:72347510T>C	uc002llw.2	+	1	4592	c.4535T>C	c.(4534-4536)TTG>TCG	p.L1512S	ZNF407_uc010xfc.1_Missense_Mutation_p.L1512S|ZNF407_uc010dqu.1_Missense_Mutation_p.L1512S|ZNF407_uc002llu.2_Missense_Mutation_p.L1511S	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1512					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		CATGAGGAATTGCTGCGGGAG	0.453													21	19					0	0	1	0	0
GALR1	2587	broad.mit.edu	37	18	74968155	74968155	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr18:74968155G>A	uc002lms.3	+	2	1205	c.708G>A	c.(706-708)AAG>AAA	p.K236K		NM_001480	NP_001471	P47211	GALR1_HUMAN	galanin receptor 1	236	Cytoplasmic (Potential).				digestion|negative regulation of adenylate cyclase activity	integral to membrane|plasma membrane	galanin receptor activity			lung(1)	1		Prostate(75;0.0865)|Esophageal squamous(42;0.129)|Melanoma(33;0.211)		OV - Ovarian serous cystadenocarcinoma(15;1.03e-06)|BRCA - Breast invasive adenocarcinoma(31;0.104)		ACATGTCAAAGAAGTCTGAAG	0.348													37	78					0	0	1	0	0
PTBP1	5725	broad.mit.edu	37	19	808727	808727	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:808727C>T	uc002lpr.2	+	12	1456	c.1350C>T	c.(1348-1350)TTC>TTT	p.F450F	PTBP1_uc002lpp.2_Silent_p.F476F|PTBP1_uc002lpq.2_Silent_p.F469F|PTBP1_uc002lps.2_Silent_p.F116F|PTBP1_uc002lpt.2_RNA|PTBP1_uc002lpu.1_Silent_p.F446F	NM_031991	NP_114368	P26599	PTBP1_HUMAN	polypyrimidine tract-binding protein 1 isoform	450					negative regulation of muscle cell differentiation|nuclear mRNA splicing, via spliceosome|regulation of alternative nuclear mRNA splicing, via spliceosome	heterogeneous nuclear ribonucleoprotein complex|nucleolus|nucleoplasm	mRNA binding|nucleotide binding|poly-pyrimidine tract binding|protein binding			kidney(1)|skin(1)	2		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGAACATATTCCCGCCCTCGG	0.672													11	11					0	0	1	0	0
TLE2	7089	broad.mit.edu	37	19	3019299	3019299	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:3019299C>T	uc002lww.2	-	7	795	c.532G>A	c.(532-534)GAG>AAG	p.E178K	TLE2_uc010xhb.1_5'UTR|TLE2_uc010dth.2_Missense_Mutation_p.E179K|TLE2_uc010xhc.1_Intron|TLE2_uc010dti.2_Missense_Mutation_p.E192K|TLE2_uc010xhd.1_Intron	NM_003260	NP_003251	Q04725	TLE2_HUMAN	transducin-like enhancer protein 2 isoform 1	178	Gly/Pro-rich.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCTCGGCCTCCACGCCCGCA	0.697													3	8					0	0	1	0	0
ANKRD24	170961	broad.mit.edu	37	19	4217012	4217012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:4217012G>A	uc010dtt.1	+	18	2131	c.1855G>A	c.(1855-1857)GAA>AAA	p.E619K	ANKRD24_uc002lzs.2_Missense_Mutation_p.E590K|ANKRD24_uc002lzt.2_Missense_Mutation_p.E591K	NM_133475	NP_597732	Q8TF21	ANR24_HUMAN	ankyrin repeat domain 24	619											0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0233)|STAD - Stomach adenocarcinoma(1328;0.181)		AGCAAACATGGAAACTAAGCC	0.552													11	17					0	0	1	0	0
LRG1	116844	broad.mit.edu	37	19	4537959	4537959	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:4537959G>A	uc002mau.2	-	2	1048	c.1037C>T	c.(1036-1038)TCC>TTC	p.S346F	PLIN5_uc002mas.2_5'Flank|PLIN5_uc002mat.1_Intron	NM_052972	NP_443204	P02750	A2GL_HUMAN	leucine-rich alpha-2-glycoprotein 1 precursor	346	LRRCT.					extracellular region|membrane				ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		GTCTCACTGGGACTTGGCCAC	0.512													10	9					0	0	1	0	0
CLEC4G	339390	broad.mit.edu	37	19	7794821	7794821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:7794821C>T	uc002mhp.3	-	8	698	c.629G>A	c.(628-630)GGC>GAC	p.G210D		NM_198492	NP_940894	Q6UXB4	CLC4G_HUMAN	C-type lectin domain family 4, member G	210	Extracellular (Potential).|C-type lectin.					integral to membrane	protein binding|sugar binding				0						AGTGAGGAAGCCCTAGAAAGG	0.687													20	24					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8160318	8160318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:8160318G>A	uc002mjf.2	-	45	5747	c.5726C>T	c.(5725-5727)TCC>TTC	p.S1909F		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1909	EGF-like 30; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GCAGTGGAAGGAACCAGCTGT	0.572													16	42					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	8982210	8982210	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:8982210C>A	uc002mkp.2	-	70	42269	c.42065G>T	c.(42064-42066)GGC>GTC	p.G14022V	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.G839V|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	14047	Extracellular (Potential).|SEA 13.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCGGGTGATGCCATGGGTCTG	0.637													19	31					3.8784e-16	3.90523e-16	1	1	0
MUC16	94025	broad.mit.edu	37	19	9018509	9018509	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:9018509C>T	uc002mkp.2	-	24	37869	c.37665G>A	c.(37663-37665)CTG>CTA	p.L12555L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12557	SEA 4.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCTCATACTTCAGGTTGGTGA	0.512													78	130					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9024197	9024197	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:9024197G>A	uc002mkp.2	-	18	37279	c.37075C>T	c.(37075-37077)CCT>TCT	p.P12359S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12361	Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGGTCCCAGGAGCTGAGGAA	0.483													8	15					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9046079	9046079	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:9046079G>A	uc002mkp.2	-	5	35756	c.35552C>T	c.(35551-35553)TCC>TTC	p.S11851F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11853	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGATGGGTGGAAAGTGGGGC	0.478													32	60					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9049915	9049915	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:9049915G>A	uc002mkp.2	-	5	31920	c.31716C>T	c.(31714-31716)GTC>GTT	p.V10572V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10574	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGAACGAGAGACCAGTGAGG	0.498													14	34					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9076735	9076735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:9076735C>T	uc002mkp.2	-	3	10915	c.10711G>A	c.(10711-10713)GAG>AAG	p.E3571K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3572	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGCGCCTCTCTGTGGCCGGG	0.517													32	57					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9080501	9080501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:9080501C>T	uc002mkp.2	-	2	9734	c.9530G>A	c.(9529-9531)GGA>GAA	p.G3177E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3178	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding	p.A3175fs*111(1)		lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGTGGAATTTCCTTGTGCTGC	0.493													26	73					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9083864	9083864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:9083864G>A	uc002mkp.2	-	1	8155	c.7951C>T	c.(7951-7953)CCT>TCT	p.P2651S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2651	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCAGTGAGAGGGATGGCTGGA	0.507													14	21					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9090078	9090078	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:9090078C>T	uc002mkp.2	-	1	1941	c.1737G>A	c.(1735-1737)GGG>GGA	p.G579G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	579	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAAGCCAAATCCCTTTTGTGG	0.532													10	17					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	9801776	9801776	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:9801776C>T	uc010xkx.1	-	3	714	c.91G>A	c.(91-93)GAA>AAA	p.E31K						RecName: Full=Zinc finger protein 562;																		TTGGAAAGTTCCTGTCCAATA	0.398													18	34					0	0	1	0	0
FARSA	2193	broad.mit.edu	37	19	13033582	13033582	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:13033582G>A	uc002mvs.2	-	13	1555	c.1507C>T	c.(1507-1509)CCC>TCC	p.P503S	FARSA_uc002mvt.2_RNA|FARSA_uc010xmv.1_Missense_Mutation_p.P472S	NM_004461	NP_004452	Q9Y285	SYFA_HUMAN	phenylalanyl-tRNA synthetase, alpha subunit	503					phenylalanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|phenylalanine-tRNA ligase activity|protein binding|tRNA binding			ovary(1)	1					L-Phenylalanine(DB00120)	TCCTGTGTGGGAGGGGGCCTC	0.622													31	61					0	0	1	0	0
LPHN1	22859	broad.mit.edu	37	19	14263229	14263229	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:14263229G>A	uc010xnn.1	-	22	3852	c.3556C>T	c.(3556-3558)CTG>TTG	p.L1186L	LPHN1_uc010xno.1_Silent_p.L1181L|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	1186	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						GGGTTGGTCAGCAGGTGGTTC	0.622													24	25					0	0	1	0	0
GIPC1	10755	broad.mit.edu	37	19	14591232	14591232	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:14591232G>A	uc002myt.2	-	6	810	c.540C>T	c.(538-540)GCC>GCT	p.A180A	GIPC1_uc002myu.2_Silent_p.A180A|GIPC1_uc002myv.2_Silent_p.A83A|GIPC1_uc002myw.2_Silent_p.A83A|GIPC1_uc002myx.2_Silent_p.A180A|GIPC1_uc002myy.2_Silent_p.A83A	NM_005716	NP_005707	O14908	GIPC1_HUMAN	regulator of G-protein signalling 19 interacting	180	PDZ.				endothelial cell migration|G-protein coupled receptor protein signaling pathway|glutamate secretion|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|protein targeting|regulation of protein stability|regulation of synaptic plasticity|synaptic transmission	cell cortex|dendritic shaft|dendritic spine|membrane fraction|soluble fraction|synaptic vesicle|vesicle membrane	actin binding|myosin binding|protein homodimerization activity|receptor binding				0						GCCCGTTAATGGCCTCGATCA	0.667											OREG0025316	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	50					0	0	1	0	0
CLEC17A	388512	broad.mit.edu	37	19	14710933	14710933	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:14710933C>T	uc010dzn.1	+	12	910	c.833C>T	c.(832-834)GCC>GTC	p.A278V	CLEC17A_uc002mzh.1_Missense_Mutation_p.A261V|CLEC17A_uc010xnt.1_RNA|CLEC17A_uc010xnu.1_Intron|CLEC17A_uc010dzo.1_Missense_Mutation_p.A278V			Q6ZS10	CL17A_HUMAN	SubName: Full=CLEC17A protein;	278	C-type lectin.|Extracellular (Potential).					cell surface|integral to membrane	fucose binding|mannose binding|metal ion binding|receptor activity				0						TGGGATGAGGCCCGGATGTTC	0.522													16	34					0	0	1	0	0
OR7C2	26658	broad.mit.edu	37	19	15052928	15052928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:15052928C>T	uc010xoc.1	+	1	628	c.628C>T	c.(628-630)CCT>TCT	p.P210S		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					GGGTGTTTTTCCTCTCTGTGG	0.453													14	40					0	0	1	0	0
NOTCH3	4854	broad.mit.edu	37	19	15281203	15281203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:15281203C>T	uc002nan.2	-	27	5129	c.5053G>A	c.(5053-5055)GAC>AAC	p.D1685N		NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	1685	Cytoplasmic (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			GAGGCCACGTCCTTGTGCAGT	0.652													15	33					0	0	1	0	0
OR10H3	26532	broad.mit.edu	37	19	15853087	15853087	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:15853087G>A	uc010xoq.1	+	1	885	c.885G>A	c.(883-885)AGG>AGA	p.R295R		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCAGTCTAAGGAACAAGGAGC	0.438													42	97					0	0	1	0	0
CYP4F11	57834	broad.mit.edu	37	19	16034682	16034682	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:16034682G>A	uc002nbu.2	-	7	894	c.858C>T	c.(856-858)TTC>TTT	p.F286F	CYP4F11_uc010eab.1_Silent_p.F286F|CYP4F11_uc002nbt.2_Silent_p.F286F	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	286					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						TGTTCTTGAGGAAATCATCAA	0.532													34	76					0	0	1	0	0
OR10H4	126541	broad.mit.edu	37	19	16060459	16060459	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:16060459C>T	uc010xov.1	+	1	642	c.642C>T	c.(640-642)TTC>TTT	p.F214F		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						GCTGTTTATTCCTCATCATCC	0.488													72	155					0	0	1	0	0
EPS15L1	58513	broad.mit.edu	37	19	16496008	16496008	+	Silent	SNP	A	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:16496008A>G	uc002ndz.1	-	21	2185	c.2179T>C	c.(2179-2181)TTA>CTA	p.L727L	EPS15L1_uc002ndx.2_Silent_p.L727L|EPS15L1_uc002ndy.2_RNA|EPS15L1_uc010xpe.1_Silent_p.L617L|EPS15L1_uc010xpf.1_Silent_p.L630L|EPS15L1_uc002nea.1_Silent_p.L727L|EPS15L1_uc010eah.1_Silent_p.L729L	NM_021235	NP_067058	Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway	727	15 X 3 AA repeats of D-P-F.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			ovary(3)|skin(2)	5						AAGGGATCTAAGGTTCCAAAG	0.542													44	56					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17091331	17091331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:17091331G>A	uc002nfb.2	-	14	1734	c.1702C>T	c.(1702-1704)CGT>TGT	p.R568C		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	521						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TGTGTTAAACGAATCGGTTTC	0.592													24	42					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17100465	17100465	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:17100465G>A	uc002nfb.2	-	13	1556	c.1524C>T	c.(1522-1524)TCC>TCT	p.S508S		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	461						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GCAGTGGGTGGGAGGGTGGCT	0.517													27	35					0	0	1	0	0
DDA1	79016	broad.mit.edu	37	19	17426787	17426787	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:17426787C>T	uc002ngd.2	+	4	308	c.181C>T	c.(181-183)CAG>TAG	p.Q61*	DDA1_uc002nge.2_5'UTR	NM_024050	NP_076955	Q9BW61	DDA1_HUMAN	DET1 and DDB1 associated 1	61										ovary(1)	1						CTACCTGCATCAGCAATGGGA	0.393													78	144					0	0	1	0	0
UBA52	7311	broad.mit.edu	37	19	18685735	18685735	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:18685735C>T	uc002njr.2	+	4	360	c.246C>T	c.(244-246)CTC>CTT	p.L82L	UBA52_uc002njs.2_Silent_p.L82L|UBA52_uc002njt.2_Silent_p.L82L	NM_001033930	NP_001029102	P62987	RL40_HUMAN	ubiquitin and ribosomal protein L40 precursor	82					activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endocrine pancreas development|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|translational elongation|translational termination|viral transcription	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane|ribosome	protein binding|structural constituent of ribosome				0						AGCCTTCTCTCCGCCAGCTTG	0.617													12	33					0	0	1	0	0
ATP13A1	57130	broad.mit.edu	37	19	19758433	19758433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:19758433G>A	uc002nnh.3	-	20	2796	c.2768C>T	c.(2767-2769)TCC>TTC	p.S923F	ATP13A1_uc002nne.2_Missense_Mutation_p.S63F|ATP13A1_uc002nnf.3_Missense_Mutation_p.S291F|ATP13A1_uc002nng.2_Missense_Mutation_p.S805F	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	923	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						CTGCTCCTCGGAGGGAGGGAG	0.692													10	24					0	0	1	0	0
ZNF737	100129842	broad.mit.edu	37	19	20727670	20727670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:20727670G>A	uc002npa.2	-	4	1519	c.1339C>T	c.(1339-1341)CAT>TAT	p.H447Y		NM_001159293	NP_001152765	C9JHM3	C9JHM3_HUMAN	zinc finger protein 737	447					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TCTCCAGTATGAATTCTCTTA	0.413													18	48					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22156581	22156581	+	Missense_Mutation	SNP	G	A	A	rs113734787		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:22156581G>A	uc002nqp.2	-	4	1404	c.1255C>T	c.(1255-1257)CAT>TAT	p.H419Y	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TCTCCAGTATGAATGACCTCA	0.373													10	35					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	23159540	23159540	+	RNA	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:23159540G>A	uc002nqy.1	-	3		c.610C>T			uc002nqz.1_Missense_Mutation_p.S136F					Homo sapiens zinc finger protein 117, mRNA (cDNA clone IMAGE:40112371).																		ACTTTTGTAGGAATTCTCTCT	0.348													7	25					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	23405853	23405853	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:23405853T>A	uc010xri.1	-	4	1312	c.1194A>T	c.(1192-1194)GAA>GAT	p.E398D						SubName: Full=cDNA FLJ56866, moderately similar to Zinc finger protein 43;																		CTTTGCCACATTCTTCACATT	0.393													6	27					0	0	1	0	0
ZNF254	9534	broad.mit.edu	37	19	24309759	24309759	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:24309759G>A	uc002nru.2	+	4	1091	c.957G>A	c.(955-957)AAG>AAA	p.K319K	ZNF254_uc010xrk.1_Silent_p.K234K	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	319					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				ATACTAGAAAGAAACCCTACA	0.388													24	26					0	0	1	0	0
TSHZ3	57616	broad.mit.edu	37	19	31769157	31769157	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:31769157C>T	uc002nsy.3	-	2	1607	c.1542G>A	c.(1540-1542)GAG>GAA	p.E514E		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	514					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					CCTTGGGACTCTCTTCTAAGT	0.483													55	99					0	0	1	0	0
SLC7A9	11136	broad.mit.edu	37	19	33334773	33334773	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:33334773G>A	uc002ntv.3	-	10	1179	c.1062C>T	c.(1060-1062)GCC>GCT	p.A354A	SLC7A9_uc002ntt.3_Intron|SLC7A9_uc002ntu.3_Silent_p.A354A|SLC7A9_uc002ntw.3_Silent_p.A145A	NM_001126335	NP_001119807	P82251	BAT1_HUMAN	solute carrier family 7, member 9	354	Helical; (Potential).		A -> T (in CSNU; type III; severe loss of amino acid transport activity).		blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	integral to plasma membrane	L-cystine transmembrane transporter activity|neutral amino acid transmembrane transporter activity|peptide antigen binding			skin(1)	1	Esophageal squamous(110;0.137)				L-Cystine(DB00138)	AAAAGATGATGGCGGGGGCTG	0.552													16	26					0	0	1	0	0
CHST8	64377	broad.mit.edu	37	19	34263584	34263584	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:34263584G>A	uc002nus.3	+	5	1396	c.891G>A	c.(889-891)CGG>CGA	p.R297R	CHST8_uc002nut.3_Silent_p.R297R|CHST8_uc002nuu.2_Silent_p.R297R	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	297	Lumenal (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					ATGCCTCTCGGGAGGCCCTGC	0.647													15	27					0	0	1	0	0
ZNF599	148103	broad.mit.edu	37	19	35250759	35250759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:35250759C>T	uc010edn.1	-	4	1335	c.947G>A	c.(946-948)TGT>TAT	p.C316Y	ZNF599_uc010edm.1_Missense_Mutation_p.C279Y	NM_001007248	NP_001007249	Q96NL3	ZN599_HUMAN	zinc finger protein 599	316	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			AGCTTTCCCACATTCTTTGCA	0.413													22	31					0	0	1	0	0
HPN	3249	broad.mit.edu	37	19	35556775	35556775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:35556775G>A	uc002nxq.1	+	13	1299	c.1054G>A	c.(1054-1056)GAC>AAC	p.D352N	HPN_uc002nxr.1_Missense_Mutation_p.D352N|HPN_uc002nxs.1_Missense_Mutation_p.D194N|HPN_uc010xsh.1_Missense_Mutation_p.D321N|HPN_uc002nxt.1_Missense_Mutation_p.D236N|LOC100128675_uc010xsi.1_Intron	NM_002151	NP_002142	P05981	HEPS_HUMAN	hepsin	352	Extracellular (Potential).|Peptidase S1.				cell growth|proteolysis	cytoplasm|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;5.38e-08)|Lung NSC(56;8.61e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)		Coagulation factor VIIa(DB00036)	CTCCCAGGGCGACAGCGGTGG	0.657													24	35					0	0	1	0	0
U2AF1L4	199746	broad.mit.edu	37	19	36233575	36233575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:36233575G>A	uc002obg.2	-	8	914	c.605C>T	c.(604-606)TCC>TTC	p.S202F	TMEM149_uc002obb.2_5'Flank|TMEM149_uc002obc.2_5'Flank|TMEM149_uc002obd.3_5'Flank|TMEM149_uc010xsy.1_5'Flank|TMEM149_uc010eej.2_Intron|U2AF1L4_uc002obh.1_3'UTR|U2AF1L4_uc002obe.2_3'UTR|U2AF1L4_uc002obf.2_Missense_Mutation_p.S178F|PSENEN_uc002obi.1_5'Flank|PSENEN_uc002obj.1_5'Flank|PSENEN_uc002obk.1_5'Flank			Q8WU68	U2AF4_HUMAN	Homo sapiens cDNA FLJ35525 fis, clone SPLEN2001650.	Error:Variant_position_missing_in_Q8WU68_after_alignment					mRNA processing|RNA splicing	nuclear speck|spliceosomal complex	nucleotide binding|RNA binding|zinc ion binding				0	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GTCCTGCCAGGAACATCTGTC	0.592													35	62					0	0	1	0	0
NPHS1	4868	broad.mit.edu	37	19	36330225	36330225	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:36330225C>T	uc002oby.2	-	22	3023	c.3023G>A	c.(3022-3024)AGA>AAA	p.R1008K	NPHS1_uc010eem.1_RNA	NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	1008	Fibronectin type-III.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GACCCTGTATCTTGTAGAAGG	0.597													34	49					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38995000	38995000	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:38995000G>A	uc002oit.2	+	50	8197	c.8067G>A	c.(8065-8067)AAG>AAA	p.K2689K	RYR1_uc002oiu.2_Silent_p.K2689K|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2689	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TGGCCCATAAGGTCTGGGCAG	0.582													10	23					0	0	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	41007838	41007838	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:41007838G>A	uc002ony.2	+	8	881	c.795G>A	c.(793-795)ATG>ATA	p.M265I	SPTBN4_uc002onx.2_Missense_Mutation_p.M265I|SPTBN4_uc002onz.2_Missense_Mutation_p.M265I	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	265	Actin-binding.|CH 2.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			ATGTGAACATGGAGGCTCCAG	0.488													51	113					0	0	1	0	0
SNRPA	6626	broad.mit.edu	37	19	41268892	41268892	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:41268892C>T	uc002ooz.2	+	4	1048	c.513C>T	c.(511-513)CCC>CCT	p.P171P	SNRPA_uc002opa.2_Silent_p.P121P	NM_004596	NP_004587	P09012	SNRPA_HUMAN	small nuclear ribonucleoprotein polypeptide A	171	Pro-rich.					nucleoplasm|spliceosomal complex	nucleotide binding|protein binding|RNA binding			skin(2)|ovary(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			GTATGATCCCCCCGCCAGGCC	0.672													15	24					0	0	1	0	0
POU2F2	5452	broad.mit.edu	37	19	42626516	42626516	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:42626516C>T	uc002osp.2	-	3	176	c.109G>A	c.(109-111)GGA>AGA	p.G37R	POU2F2_uc002osn.2_Missense_Mutation_p.G37R|POU2F2_uc002oso.2_5'UTR|POU2F2_uc002osq.2_Missense_Mutation_p.G37R|POU2F2_uc002osr.1_Missense_Mutation_p.G37R	NM_002698	NP_002689	P09086	PO2F2_HUMAN	POU domain, class 2, transcription factor 2	37					humoral immune response|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2		Prostate(69;0.059)				GTGTCTGGTCCATTTCTTTCG	0.572													51	89					0	0	1	0	0
ZNF526	116115	broad.mit.edu	37	19	42728983	42728983	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:42728983G>T	uc002osz.1	+	3	584	c.428G>T	c.(427-429)TGG>TTG	p.W143L		NM_133444	NP_597701	Q8TF50	ZN526_HUMAN	zinc finger protein 526	143	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0704)				TACCAGTGCTGGGACTGCCAG	0.622													35	63					4.14481e-20	4.18505e-20	1	1	0
ERF	2077	broad.mit.edu	37	19	42754644	42754644	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:42754644A>C	uc002ote.3	-	2	254	c.96T>G	c.(94-96)TTT>TTG	p.F32L	ERF_uc002otd.3_5'UTR	NM_006494	NP_006485	P50548	ERF_HUMAN	Ets2 repressor factor	32	ETS.				cell proliferation|regulation of transcription from RNA polymerase II promoter	nucleus	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			lung(1)|kidney(1)|central_nervous_system(1)|skin(1)	4		Prostate(69;0.00682)				GCTCCAGGATAAAGTGCCACA	0.627													19	35					0	0	1	0	0
PSG1	5669	broad.mit.edu	37	19	43376049	43376049	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:43376049C>T	uc002ovb.2	-	3	717	c.579G>A	c.(577-579)TTG>TTA	p.L193L	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Silent_p.L193L|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Silent_p.L193L|PSG1_uc010eio.1_Silent_p.L193L|PSG1_uc002oux.1_Silent_p.L122L|PSG1_uc002ouy.1_Silent_p.L193L|PSG1_uc002ouz.1_Silent_p.L193L|PSG1_uc002ova.1_Intron|PSG1_uc002ovc.2_Intron|PSG1_uc002ovd.1_Silent_p.L193L	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	193	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				CGGACAGCTTCAAGCTGTGAG	0.517													111	212					0	0	1	0	0
PSG7	5676	broad.mit.edu	37	19	43433857	43433857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:43433857G>A	uc002ovl.3	-	4	548	c.446C>T	c.(445-447)CCC>CTC	p.P149L	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_5'Flank|PSG7_uc002out.1_5'UTR|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Missense_Mutation_p.P27L	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	149	Ig-like C2-type 1.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				GGAGATGGAGGGTTTGGGAGT	0.512													53	115					0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43530502	43530502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:43530502G>A	uc002ovh.1	-	1	130	c.41C>T	c.(40-42)CCC>CTC	p.P14L	PSG11_uc002ouw.2_Missense_Mutation_p.P14L|PSG10_uc002ouv.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Missense_Mutation_p.P14L|PSG11_uc002ovm.1_Missense_Mutation_p.P8L|PSG11_uc002ovn.1_Missense_Mutation_p.P14L|PSG11_uc002ovo.1_Missense_Mutation_p.P8L|PSG11_uc002ovp.1_Missense_Mutation_p.P8L			Q00889	PSG6_HUMAN	SubName: Full=Putative uncharacterized protein PSG6;	8					female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				CTCTGTGCAGGGAGGGGCTGA	0.587													23	114					0	0	1	0	0
PSG4	5672	broad.mit.edu	37	19	43699285	43699285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:43699285G>A	uc002ovy.2	-	4	952	c.850C>T	c.(850-852)CCC>TCC	p.P284S	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.P191S|PSG4_uc002ovz.2_Intron	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	284	Ig-like C2-type 2.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				TTTACCCTGGGACTGACAGGG	0.458													95	162					0	0	1	0	0
PSG9	5678	broad.mit.edu	37	19	43766276	43766276	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:43766276G>A	uc002owd.3	-	3	544	c.445C>T	c.(445-447)CCC>TCC	p.P149S	PSG9_uc002owe.3_Missense_Mutation_p.P149S|PSG9_uc010xwm.1_Intron|PSG9_uc002owf.3_Intron|PSG9_uc002owg.2_Missense_Mutation_p.P149S|PSG9_uc002owh.2_Intron	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	149	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GAGATGTAGGGCTTGGGAGTC	0.512													76	127					0	0	1	0	0
QPCTL	54814	broad.mit.edu	37	19	46205096	46205096	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:46205096C>T	uc010xxr.1	+	6	1148	c.927C>T	c.(925-927)CCC>CCT	p.P309P	QPCTL_uc010ekn.2_Silent_p.P215P	NM_017659	NP_060129	Q9NXS2	QPCTL_HUMAN	glutaminyl-peptide cyclotransferase-like isoform	309					peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase|proteolysis	Golgi membrane|integral to membrane	acyltransferase activity|glutaminyl-peptide cyclotransferase activity|peptidase activity|protein binding|zinc ion binding			skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0059)|GBM - Glioblastoma multiforme(486;0.0882)|Epithelial(262;0.208)		AGTCTCATCCCCAGGAAGTGA	0.577													18	46					0	0	1	0	0
CCDC61	729440	broad.mit.edu	37	19	46521385	46521385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:46521385C>T	uc002pdw.2	+	14	1475	c.1475C>T	c.(1474-1476)TCC>TTC	p.S492F	MIR769_hsa-mir-769|MI0003834_5'Flank	NM_001080402	NP_001073871			coiled-coil domain containing 61											ovary(1)	1		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00221)|GBM - Glioblastoma multiforme(486;0.0233)|Epithelial(262;0.164)		CTGGCCAACTCCGGGGGCTGG	0.607													7	7					0	0	1	0	0
ZC3H4	23211	broad.mit.edu	37	19	47569951	47569952	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:47569951_47569952GG>AA	uc002pga.3	-	15	3611_3612	c.3573_3574CC>TT	c.(3571-3576)GTCCGC>GTTTGC	p.R1192C	ZC3H4_uc002pgb.1_RNA	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	1192							nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		GCAGACTTGCGGACGAACGGGG	0.663													5	17					0	0	1	0	0
LIG1	3978	broad.mit.edu	37	19	48631188	48631188	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:48631188C>T	uc002pia.1	-	20	2031	c.1911G>A	c.(1909-1911)GTG>GTA	p.V637V	LIG1_uc010xze.1_Silent_p.V330V|LIG1_uc002phz.1_RNA|LIG1_uc002pib.1_RNA|LIG1_uc010xzf.1_Silent_p.V569V|LIG1_uc010xzg.1_Silent_p.V606V	NM_000234	NP_000225	P18858	DNLI1_HUMAN	DNA ligase I	637					anatomical structure morphogenesis|base-excision repair|cell division|DNA ligation involved in DNA repair|DNA strand elongation involved in DNA replication|double-strand break repair via homologous recombination|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding			large_intestine(2)|lung(1)	3		all_epithelial(76;3.1e-06)|all_lung(116;4.39e-06)|Lung NSC(112;8.96e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;8.45e-05)|all cancers(93;0.000423)|Epithelial(262;0.0177)|GBM - Glioblastoma multiforme(486;0.0329)	Bleomycin(DB00290)	GGGTGGTGAGCACTTGGAATG	0.577								NER					101	165					0	0	1	0	0
ZNF114	163071	broad.mit.edu	37	19	48785706	48785706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:48785706C>T	uc002pil.1	+	5	585	c.88C>T	c.(88-90)CTC>TTC	p.L30F	ZNF114_uc010elv.1_Missense_Mutation_p.L30F|ZNF114_uc002pim.1_Missense_Mutation_p.L30F|ZNF114_uc002pin.2_5'UTR	NM_153608	NP_705836	Q8NC26	ZN114_HUMAN	zinc finger protein 114	30	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_epithelial(76;8.01e-05)|all_lung(116;0.000112)|Lung NSC(112;0.000192)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;7.56e-05)|all cancers(93;0.000113)|Epithelial(262;0.00962)|GBM - Glioblastoma multiforme(486;0.0153)		TCAGAGGAATCTCTACAGAGA	0.512													58	90					0	0	1	0	0
FAM83E	54854	broad.mit.edu	37	19	49116546	49116546	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:49116546G>A	uc002pjn.2	-	1	149	c.84C>T	c.(82-84)TCC>TCT	p.S28S		NM_017708	NP_060178	Q2M2I3	FA83E_HUMAN	hypothetical protein LOC54854	28										ovary(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		GCTGGCCCTCGGAATATAGAA	0.706													7	8					0	0	1	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49362198	49362198	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:49362198G>A	uc002pkx.2	-	8	1442	c.891C>T	c.(889-891)CCC>CCT	p.P297P	PLEKHA4_uc002pkw.1_Intron|PLEKHA4_uc010eml.2_Silent_p.P297P	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	297	Pro-rich.					cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		GTCCTCGGCGGGGAGTAGGGG	0.662													22	50					0	0	1	0	0
TRPM4	54795	broad.mit.edu	37	19	49671179	49671179	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:49671179C>T	uc002pmw.2	+	4	345	c.273C>T	c.(271-273)CTC>CTT	p.L91L	TRPM4_uc010emu.2_Silent_p.L91L|TRPM4_uc010yak.1_Intron|TRPM4_uc002pmx.2_Intron|TRPM4_uc010emv.2_Intron|TRPM4_uc010yal.1_Intron	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	91	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		CACAGTTCCTCCGGCTCTCTG	0.483													43	85					0	0	1	0	0
ATF5	22809	broad.mit.edu	37	19	50435808	50435808	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:50435808C>T	uc010enq.1	+	4	875	c.308C>T	c.(307-309)TCC>TTC	p.S103F	ATF5_uc002prd.2_Missense_Mutation_p.S103F	NM_012068	NP_036200	Q9Y2D1	ATF5_HUMAN	activating transcription factor 5	103					regulation of transcription from RNA polymerase II promoter	cytoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			skin(2)	2		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00221)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		GCTATGGCCTCCCTCCTCAAG	0.483													18	36					0	0	1	0	0
MYH14	79784	broad.mit.edu	37	19	50764857	50764857	+	Silent	SNP	C	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:50764857C>A	uc002prr.1	+	19	2474	c.2427C>A	c.(2425-2427)TCC>TCA	p.S809S	MYH14_uc010enu.1_Silent_p.S850S|MYH14_uc002prq.1_Silent_p.S817S	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	809	IQ.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		TCATCGTCTCCTTCCAGGCAG	0.652													6	20					8.12818e-05	8.15619e-05	1	1	0
NAPSA	9476	broad.mit.edu	37	19	50865262	50865262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:50865262G>A	uc002prx.2	-	3	366	c.313C>T	c.(313-315)CCG>TCG	p.P105S	NR1H2_uc002prv.3_Intron	NM_004851	NP_004842	O96009	NAPSA_HUMAN	napsin A preproprotein	105					proteolysis	extracellular region	aspartic-type endopeptidase activity				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00743)|GBM - Glioblastoma multiforme(134;0.0183)		CTCCTGGACGGGACCCAGAGA	0.547													4	5					0	0	1	0	0
NAPSA	9476	broad.mit.edu	37	19	50865469	50865469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:50865469C>T	uc002prx.2	-	2	238	c.185G>A	c.(184-186)GGG>GAG	p.G62E	NR1H2_uc002prv.3_Intron	NM_004851	NP_004842	O96009	NAPSA_HUMAN	napsin A preproprotein	62					proteolysis	extracellular region	aspartic-type endopeptidase activity				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00743)|GBM - Glioblastoma multiforme(134;0.0183)		GGGCTTGTCCCCAGGGGATGG	0.587													12	33					0	0	1	0	0
SPIB	6689	broad.mit.edu	37	19	50923210	50923210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:50923210G>A	uc002psd.2	+	2	56	c.31G>A	c.(31-33)GGG>AGG	p.G11R	SPIB_uc002pse.2_Missense_Mutation_p.G11R|SPIB_uc010ycc.1_5'UTR	NM_003121	NP_003112	Q01892	SPIB_HUMAN	Spi-B transcription factor (Spi-1/PU.1 related)	11	TAD1 (Acidic).				regulation of transcription from RNA polymerase II promoter	cytoplasm|microtubule cytoskeleton|nucleus	sequence-specific DNA binding			lung(1)|kidney(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		CAGGCTCGACGGGCCACACTT	0.647													4	12					0	0	1	0	0
SHANK1	50944	broad.mit.edu	37	19	51189596	51189596	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:51189596G>A	uc002psx.1	-	20	2494	c.2475C>T	c.(2473-2475)ATC>ATT	p.I825I	SHANK1_uc002psw.1_Silent_p.I209I	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	825					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		CTGCGGCCAGGATTTCGTCCA	0.562													29	47					0	0	1	0	0
KLK5	25818	broad.mit.edu	37	19	51452217	51452217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:51452217G>A	uc002pue.2	-	5	708	c.490C>T	c.(490-492)CGT>TGT	p.R164C	KLK5_uc002puf.2_Missense_Mutation_p.R164C|KLK5_uc002pug.2_Missense_Mutation_p.R164C	NM_001077491	NP_001070959	Q9Y337	KLK5_HUMAN	kallikrein-related peptidase 5 preproprotein	164	Peptidase S1.				epidermis development|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis	extracellular space	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00379)|GBM - Glioblastoma multiforme(134;0.00888)		TTAGTGGGACGAATTCTTCTG	0.547													31	53					0	0	1	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51961520	51961520	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:51961520A>C	uc002pwt.2	-	1	189	c.122T>G	c.(121-123)CTG>CGG	p.L41R	SIGLEC8_uc010yda.1_Missense_Mutation_p.L41R|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Missense_Mutation_p.L41R	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	41	Ig-like V-type.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		ATGGACACACAGGCCCTCCTG	0.557													49	79					0	0	1	0	0
ZNF701	55762	broad.mit.edu	37	19	53086690	53086690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:53086690C>T	uc002pzs.1	+	4	1505	c.1378C>T	c.(1378-1380)CAT>TAT	p.H460Y	ZNF701_uc010ydn.1_Missense_Mutation_p.H526Y	NM_018260	NP_060730	Q9NV72	ZN701_HUMAN	zinc finger protein 701	460	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0105)|GBM - Glioblastoma multiforme(134;0.0402)		TCATAGACTTCATACTGGAAA	0.358													21	29					0	0	1	0	0
ZNF83	55769	broad.mit.edu	37	19	53116885	53116885	+	Silent	SNP	A	G	G	rs7247257		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:53116885A>G	uc002pzu.3	-	2	2177	c.933T>C	c.(931-933)CAT>CAC	p.H311H	ZNF83_uc002pzv.3_Silent_p.H311H|ZNF83_uc010eps.2_Silent_p.H283H|ZNF83_uc010ept.2_Silent_p.H311H|ZNF83_uc010epu.2_Silent_p.H311H|ZNF83_uc010epv.2_Silent_p.H311H|ZNF83_uc010epw.2_Silent_p.H311H|ZNF83_uc010epx.2_Silent_p.H283H|ZNF83_uc010epy.2_Silent_p.H311H|ZNF83_uc010epz.2_Silent_p.H283H	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	311	C2H2-type 8.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		TCTCTCCAGTATGAATTCTCC	0.418													3	156					0	0	1	0	0
ZNF468	90333	broad.mit.edu	37	19	53345285	53345285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:53345285G>A	uc002qaf.2	-	4	413	c.262C>T	c.(262-264)CAT>TAT	p.H88Y	ZNF468_uc002qae.2_Missense_Mutation_p.H35Y	NM_001008801	NP_001008801	Q5VIY5	ZN468_HUMAN	zinc finger protein ZNF468 isoform 2	88					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0358)		TCAATTTCATGGAAACAAAAT	0.438													38	70					0	0	1	0	0
MIR519C	574466	broad.mit.edu	37	19	54189795	54189795	+	RNA	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:54189795G>A	hsa-mir-519c|MI0003148	+			c.73G>A			MIR1283-1_hsa-mir-1283-1|MI0003832_5'Flank																	0						CTTTTTAGAGGATTACAGTTT	0.433													29	58					0	0	1	0	0
MIR1283-2	100302205	broad.mit.edu	37	19	54261553	54261553	+	RNA	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:54261553G>A	hsa-mir-1283-2|MI0006430	+			c.68G>A																				0						GCTTCCCTTTGGAGTGTTACG	0.458													27	35					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54313965	54313965	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:54313965C>T	uc002qch.3	-	3	1168	c.948G>A	c.(946-948)GAG>GAA	p.E316E	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Silent_p.E316E|NLRP12_uc002qcj.3_Silent_p.E316E|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Silent_p.E316E	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	316	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		TGGGCCGTTTCTCCTCCCAGC	0.567													9	26					0	0	1	0	0
PRKCG	5582	broad.mit.edu	37	19	54403691	54403691	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:54403691C>T	uc002qcq.1	+	13	1674	c.1392C>T	c.(1390-1392)ATC>ATT	p.I464I	PRKCG_uc010yeg.1_Silent_p.I464I|PRKCG_uc010yeh.1_Silent_p.I351I	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	464	Protein kinase.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		CGGCAGAAATCGCTATCGGCC	0.587													10	24					0	0	1	0	0
LILRA5	353514	broad.mit.edu	37	19	54822892	54822892	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:54822892G>A	uc002qfe.2	-	5	624	c.504C>T	c.(502-504)TTC>TTT	p.F168F	LILRA5_uc002qff.2_Silent_p.F156F|LILRA5_uc010yev.1_Silent_p.F168F|LILRA5_uc010yew.1_Silent_p.F156F|LILRA5_uc002qfh.1_Silent_p.F156F|LILRA5_uc002qfg.1_Silent_p.F168F	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	168	Extracellular (Potential).|Ig-like C2-type 2.				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TGAACCTGTCGAATCTCAGCC	0.582													19	41					0	0	1	0	0
LILRP2	79166	broad.mit.edu	37	19	55224635	55224636	+	RNA	DNP	CC	TT	TT			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:55224635_55224636CC>TT	uc002qgs.1	+	1		c.5035_5036CC>TT			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						AGAATCTCATCCGCGTGGCTGT	0.574													16	27					0	0	1	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55286782	55286782	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:55286782G>A	uc002qhb.1	+	4	574	c.536G>A	c.(535-537)GGA>GAA	p.G179E	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_RNA|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.G179E	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	179	Extracellular (Potential).|Ig-like C2-type 2.				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		AAGGTCAACGGAACATTCCAG	0.577													48	101					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55449590	55449590	+	Missense_Mutation	SNP	G	A	A	rs104895549		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:55449590G>A	uc002qih.3	-	5	2027	c.1951C>T	c.(1951-1953)CCG>TCG	p.P651S	NLRP7_uc002qig.3_Intron|NLRP7_uc002qii.3_Missense_Mutation_p.P651S|NLRP7_uc010esk.2_Missense_Mutation_p.P651S|NLRP7_uc010esl.2_Missense_Mutation_p.P679S	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	651			P -> S (in HYDM).				ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GCCCAGTTCGGAATGGTTAGG	0.453													28	41					0	0	1	0	0
SUV420H2	84787	broad.mit.edu	37	19	55854202	55854202	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:55854202C>T	uc002qkj.3	+	4	617	c.369C>T	c.(367-369)ATC>ATT	p.I123I	SUV420H2_uc010esx.1_Silent_p.I123I|SUV420H2_uc002qkk.1_Silent_p.I123I|SUV420H2_uc002qkl.2_Silent_p.I8I	NM_032701	NP_116090	Q86Y97	SV422_HUMAN	suppressor of variegation 4-20 homolog 2	123	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding				0	Breast(117;0.191)		BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		GGGCCAAGATCGTGTCCACTC	0.587													27	44					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56466021	56466022	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:56466021_56466022GG>AA	uc002qmh.2	+	3	668_669	c.597_598GG>AA	c.(595-600)CAGGGT>CAAAGT	p.G200S	NLRP8_uc010etg.2_Missense_Mutation_p.G200S	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	200						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AAAGACCCCAGGGTAGACAGCC	0.515													15	43					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56515406	56515406	+	Silent	SNP	C	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:56515406C>A	uc002qmj.2	+	2	387	c.387C>A	c.(385-387)ATC>ATA	p.I129I	NLRP5_uc002qmi.2_Silent_p.I129I	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	129	DAPIN.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CCATTAGCATCTTTGAAAACA	0.507													18	28					8.28177e-16	8.33328e-16	1	1	0
NLRP5	126206	broad.mit.edu	37	19	56569737	56569737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:56569737C>T	uc002qmj.2	+	14	3431	c.3431C>T	c.(3430-3432)TCG>TTG	p.S1144L	NLRP5_uc002qmi.2_Missense_Mutation_p.S1125L	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	1144						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		AAGCTGTGTTCGGCCTTTGCC	0.493													10	20					0	0	1	0	0
ZNF835	90485	broad.mit.edu	37	19	57176042	57176042	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:57176042G>A	uc010ygo.1	-	2	591	c.591C>T	c.(589-591)TTC>TTT	p.F197F	ZNF835_uc010ygn.1_Silent_p.F175F	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						AGCCCTGGCTGAAGGCCTTGC	0.706													6	10					0	0	1	0	0
ZNF805	390980	broad.mit.edu	37	19	57764906	57764906	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:57764906T>A	uc010ygt.1	+	4	926	c.719T>A	c.(718-720)TTT>TAT	p.F240Y	ZNF805_uc010ygu.1_Missense_Mutation_p.F107Y	NM_001023563	NP_001018857	Q5CZA5	ZN805_HUMAN	zinc finger protein 805 isoform 1	240	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGAAAAACCTTTAGCAAGAGT	0.478													4	11					0	0	1	0	0
ZNF543	125919	broad.mit.edu	37	19	57838006	57838006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:57838006C>T	uc002qoi.1	+	3	496	c.151C>T	c.(151-153)CCT>TCT	p.P51S		NM_213598	NP_998763	Q08ER8	ZN543_HUMAN	zinc finger protein 543	51	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)|pancreas(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CACAGGCTGTCCTTTGTTCAA	0.488													19	35					0	0	1	0	0
C19orf18	147685	broad.mit.edu	37	19	58477992	58477992	+	Missense_Mutation	SNP	G	A	A	rs146255633		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:58477992G>A	uc002qqv.2	-	4	381	c.277C>T	c.(277-279)CGG>TGG	p.R93W		NM_152474	NP_689687	Q8NEA5	CS018_HUMAN	hypothetical protein LOC147685 precursor	93	Extracellular (Potential).					integral to membrane				ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.017)		GGTCTATGCCGAATTATTGCT	0.348													17	32					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1926949	1926949	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:1926949C>T	uc002qxe.2	-	10	1419	c.592G>A	c.(592-594)GAT>AAT	p.D198N	MYT1L_uc002qxd.2_Missense_Mutation_p.D198N|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	198					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		ACCAGTTCATCGTAATTGTCA	0.403													14	13					0	0	1	0	0
ROCK2	9475	broad.mit.edu	37	2	11333968	11333968	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:11333968G>A	uc002rbd.1	-	30	4073	c.3624C>T	c.(3622-3624)GTC>GTT	p.V1208V		NM_004850	NP_004841	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein	1208	PH.				axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			stomach(2)|skin(2)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		TAACTGGTCGGACATGAAATA	0.299													11	40					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21230950	21230950	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:21230950T>G	uc002red.2	-	26	8918	c.8790A>C	c.(8788-8790)AAA>AAC	p.K2930N		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2930					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GGCAGGCCCATTTCCATGACC	0.473													45	63					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21231343	21231343	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:21231343G>A	uc002red.2	-	26	8525	c.8397C>T	c.(8395-8397)TCC>TCT	p.S2799S		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2799					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTTCTAATTTGGACTCTCCTT	0.438													22	33					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21234304	21234304	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:21234304C>T	uc002red.2	-	26	5564	c.5436G>A	c.(5434-5436)GGG>GGA	p.G1812G		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1812					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GCCGTAGTTTCCCATTGTTGG	0.403													26	57					0	0	1	0	0
DPYSL5	56896	broad.mit.edu	37	2	27163025	27163025	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:27163025C>T	uc002rhu.3	+	9	1232	c.1074C>T	c.(1072-1074)ATC>ATT	p.I358I	DPYSL5_uc002rhv.3_Silent_p.I358I	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	358					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGAGCGTCATCTGGGAGAGAG	0.532													24	60					0	0	1	0	0
C2orf16	84226	broad.mit.edu	37	2	27800586	27800586	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:27800586C>T	uc002rkz.3	+	1	1198	c.1147C>T	c.(1147-1149)CAG>TAG	p.Q383*		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	383										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CCCCAAACCACAGCATCATGT	0.453													11	19					0	0	1	0	0
C2orf71	388939	broad.mit.edu	37	2	29293945	29293946	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:29293945_29293946GG>AA	uc002rmt.1	-	1	3182_3183	c.3182_3183CC>TT	c.(3181-3183)CCC>CTT	p.P1061L		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	1061	Pro-rich.				response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						GTGCACTCTCGGGGGGAGGGTT	0.668													42	47					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31570499	31570499	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:31570499C>T	uc002rnv.1	-	29	3244	c.3165G>A	c.(3163-3165)CTG>CTA	p.L1055L		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	1055					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TGGGGATTTTCAGAGCTCTAC	0.527													35	38					0	0	1	0	0
SLC8A1	6546	broad.mit.edu	37	2	40405573	40405573	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:40405573G>A	uc002rrx.2	-	2	1893	c.1869C>T	c.(1867-1869)TTC>TTT	p.F623F	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Silent_p.F623F|SLC8A1_uc002rrz.2_Intron|SLC8A1_uc002rsa.2_Intron|SLC8A1_uc002rsd.3_Intron|SLC8A1_uc002rsb.1_Intron	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	623	Calx-beta 2.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	CAATCTCAAGGAAGAAGGTCT	0.498													63	118					0	0	1	0	0
SLC8A1	6546	broad.mit.edu	37	2	40655948	40655948	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:40655948G>A	uc002rrx.2	-	1	1497	c.1473C>T	c.(1471-1473)TTC>TTT	p.F491F	SLC8A1_uc002rry.2_Silent_p.F491F|SLC8A1_uc002rrz.2_Silent_p.F491F|SLC8A1_uc002rsa.2_Silent_p.F491F|SLC8A1_uc002rsd.3_Silent_p.F491F|SLC8A1_uc002rsb.1_Silent_p.F491F|SLC8A1_uc010fan.1_Silent_p.F491F|SLC8A1_uc002rsc.1_Silent_p.F491F	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	491	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	GATGCACAAGGAAATTTTCAT	0.418													8	26					0	0	1	0	0
REL	5966	broad.mit.edu	37	2	61149238	61149238	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:61149238C>T	uc002sam.1	+	11	1652	c.1428C>T	c.(1426-1428)TCC>TCT	p.S476S	REL_uc002san.1_Silent_p.S444S	NM_002908	NP_002899	Q04864	REL_HUMAN	v-rel reticuloendotheliosis viral oncogene	476					positive regulation of I-kappaB kinase/NF-kappaB cascade	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3	all_hematologic(2;0.0797)	Ovarian(717;0.0728)	LUSC - Lung squamous cell carcinoma(5;6.2e-08)|Lung(5;1.65e-06)|Epithelial(17;0.064)|all cancers(80;0.221)			AAGCGTCATCCATGCCATCAG	0.423			A		Hodgkin Lymphoma								12	44					0	0	1	0	0
FAM161A	84140	broad.mit.edu	37	2	62067293	62067293	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:62067293G>A	uc010ypo.1	-	3	948	c.846C>T	c.(844-846)TTC>TTT	p.F282F	FAM161A_uc002sbm.3_Silent_p.F282F|FAM161A_uc002sbn.3_Silent_p.F92F|FAM161A_uc010fcm.1_RNA|FAM161A_uc010fcn.1_Silent_p.F173F	NM_032180	NP_115556	Q3B820	F161A_HUMAN	hypothetical protein LOC84140	282					response to stimulus|visual perception	centrosome				large_intestine(2)|ovary(1)	3						GATTGGCTCGGAATTTCTTCT	0.388													39	58					0	0	1	0	0
SPRED2	200734	broad.mit.edu	37	2	65541250	65541250	+	Silent	SNP	G	A	A	rs151327457		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:65541250G>A	uc002sdr.3	-	6	1177	c.642C>T	c.(640-642)ATC>ATT	p.I214I	SPRED2_uc010fcw.2_Silent_p.I211I	NM_181784	NP_861449	Q7Z698	SPRE2_HUMAN	sprouty-related protein with EVH-1 domain 2	214	KBD.				inactivation of MAPK activity|multicellular organismal development	transport vesicle membrane	stem cell factor receptor binding			ovary(1)|lung(1)|central_nervous_system(1)	3						TGATGCGCACGATCTCCTCGT	0.622													15	22					0	0	1	0	0
ANTXR1	84168	broad.mit.edu	37	2	69318037	69318037	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:69318037C>T	uc002sfg.2	+	9	1045	c.689C>T	c.(688-690)ACC>ATC	p.T230I	ANTXR1_uc002sfe.2_Missense_Mutation_p.T230I|ANTXR1_uc002sff.2_Missense_Mutation_p.T230I|ANTXR1_uc002sfd.2_Missense_Mutation_p.T230I	NM_032208	NP_115584	Q9H6X2	ANTR1_HUMAN	anthrax toxin receptor 1 isoform 1 precursor	230	Extracellular (Potential).				actin cytoskeleton reorganization|substrate adhesion-dependent cell spreading	filopodium membrane|integral to membrane|lamellipodium membrane	actin filament binding|collagen binding|metal ion binding|protein binding|transmembrane receptor activity			ovary(2)|skin(2)	4						GAACCATCCACCATATGTGCA	0.378									Familial_Infantile_Hemangioma				22	39					0	0	1	0	0
SFXN5	94097	broad.mit.edu	37	2	73228693	73228693	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:73228693G>A	uc002siq.2	-	7	503	c.372C>T	c.(370-372)CTC>CTT	p.L124L	SFXN5_uc002sio.2_Silent_p.L16L|SFXN5_uc010yrc.1_5'UTR|SFXN5_uc002sip.2_Intron|SFXN5_uc010fet.2_Silent_p.L124L	NM_144579	NP_653180	Q8TD22	SFXN5_HUMAN	sideroflexin 5	124					iron ion homeostasis	integral to membrane	cation transmembrane transporter activity			ovary(1)	1						GGTTGGGCAAGAGAAGACCGA	0.478													14	34					0	0	1	0	0
ALMS1	7840	broad.mit.edu	37	2	73678374	73678375	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:73678374_73678375GG>AA	uc002sje.1	+	10	4834_4835	c.4723_4724GG>AA	c.(4723-4725)GGA>AAA	p.G1575K	ALMS1_uc002sjf.1_Missense_Mutation_p.G1531K|ALMS1_uc002sjg.2_Missense_Mutation_p.G961K|ALMS1_uc002sjh.1_Missense_Mutation_p.G961K	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1573	22.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						CTACTCATTTGGAGAGAAGCCG	0.446													21	48					0	0	1	0	0
C2orf78	388960	broad.mit.edu	37	2	74042727	74042727	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:74042727C>T	uc002sjr.1	+	3	1498	c.1377C>T	c.(1375-1377)TCC>TCT	p.S459S		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	459										ovary(2)	2						TCTTCAGTTCCTTACAAGATC	0.448													19	24					0	0	1	0	0
HK2	3099	broad.mit.edu	37	2	75099521	75099521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:75099521C>T	uc002snd.2	+	4	2396	c.470C>T	c.(469-471)CCC>CTC	p.P157L		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	157	Regulatory.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						TTCTCGTTCCCCTGCCACCAG	0.512													27	53					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89513011	89513011	+	RNA	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:89513011C>T	uc010ytr.1	-	23		c.2877G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GCCACTGAACCGAGATGGGAC	0.473													57	160					0	0	1	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95518946	95518946	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:95518946C>T	uc010fhp.2	-	3		c.398_splice	c.e3+1			NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						TTGATCTATACCTTGTCCAGT	0.403													35	87					0	0	1	0	0
MGAT4A	11320	broad.mit.edu	37	2	99256384	99256384	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:99256384G>A	uc002sze.2	-	12	1523	c.1209C>T	c.(1207-1209)TAC>TAT	p.Y403Y	C2orf64_uc002sza.2_Intron|MGAT4A_uc010yvm.1_Silent_p.Y275Y|MGAT4A_uc010fil.2_Silent_p.Y157Y	NM_012214	NP_036346	Q9UM21	MGT4A_HUMAN	alpha-1,3-mannosyl-glycoprotein	403	Lumenal (Potential).				N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			skin(1)	1						TATGCCCTTGGTAGACCTTCA	0.403													18	32					0	0	1	0	0
TBC1D8	11138	broad.mit.edu	37	2	101706809	101706809	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:101706809G>A	uc010fiv.2	-	2	276	c.145C>T	c.(145-147)CTG>TTG	p.L49L	TBC1D8_uc010yvw.1_Silent_p.L49L	NM_001102426	NP_001095896	O95759	TBCD8_HUMAN	TBC1 domain family, member 8	49					blood circulation|positive regulation of cell proliferation	intracellular|membrane	calcium ion binding|Rab GTPase activator activity			ovary(3)	3						ACTGCATCCAGAGCGCCGACC	0.542													11	32					0	0	1	0	0
IL1RL1	9173	broad.mit.edu	37	2	102965595	102965595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:102965595G>A	uc002tbu.1	+	10	1445	c.1174G>A	c.(1174-1176)GAT>AAT	p.D392N	IL18R1_uc002tbw.3_Intron	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	392	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						ATCCAGTACAGATGGGGCCAG	0.388													34	56					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103120155	103120155	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:103120155C>T	uc002tbz.3	+	3	1426	c.969C>T	c.(967-969)TCC>TCT	p.S323S		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	323	Helical; Name=I/M7; (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						TCTATCTCTCCGGCATCCTGG	0.423													27	50					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103136327	103136327	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:103136327G>A	uc002tbz.3	+	9	2188	c.1731G>A	c.(1729-1731)AGG>AGA	p.R577R		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	577	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						GGGCCCAGAGGATACAAGGAA	0.453													20	29					0	0	1	0	0
RGPD3	653489	broad.mit.edu	37	2	107040657	107040657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:107040657C>T	uc010ywi.1	-	20	3823	c.3766G>A	c.(3766-3768)GAA>AAA	p.E1256K		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1256					intracellular transport		binding			ovary(1)	1						AAAGCATCTTCCCTTAAATCA	0.448													70	133					0	0	1	0	0
RGPD3	653489	broad.mit.edu	37	2	107041240	107041240	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:107041240A>T	uc010ywi.1	-	20	3240	c.3183T>A	c.(3181-3183)TAT>TAA	p.Y1061*		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1061	RanBD1 1.				intracellular transport		binding			ovary(1)	1						CCCCCTGTGAATACAGAACTT	0.393													110	229					0	0	1	0	0
SLC5A7	60482	broad.mit.edu	37	2	108626828	108626828	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:108626828C>T	uc002tdv.2	+	9	1530	c.1254C>T	c.(1252-1254)TTC>TTT	p.F418F	SLC5A7_uc010ywm.1_Silent_p.F171F|SLC5A7_uc010fjj.2_Silent_p.F418F|SLC5A7_uc010ywn.1_Silent_p.F305F	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	418	Helical; (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	TCGTTATCTTCCCCCAGCTGC	0.498													21	41					0	0	1	0	0
SULT1C3	442038	broad.mit.edu	37	2	108881280	108881280	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:108881280G>A	uc010ywo.1	+	6	622	c.622_splice	c.e6-1	p.D208_splice		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member							cytoplasm	alcohol sulfotransferase activity			skin(1)	1						TCCACATACAGGACCCAAAGC	0.393													7	21					0	0	1	0	0
EDAR	10913	broad.mit.edu	37	2	109526963	109526963	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:109526963C>T	uc002teq.3	-	9	1187	c.756G>A	c.(754-756)AAG>AAA	p.K252K	EDAR_uc010fjn.2_Silent_p.K284K|EDAR_uc010yws.1_Silent_p.K284K	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	252	Cytoplasmic (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						CAAATTCATCCTTCTCGGAGA	0.552													8	15					0	0	1	0	0
PCDP1	200373	broad.mit.edu	37	2	120383218	120383218	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:120383218G>A	uc002tmb.2	+	16	1704	c.612G>A	c.(610-612)GAG>GAA	p.E204E	PCDP1_uc010yyq.1_Silent_p.E334E	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	490						cilium	calmodulin binding				0	Colorectal(110;0.196)					TGGACAAAGAGAGTATACTGA	0.413													23	46					0	0	1	0	0
MGAT5	4249	broad.mit.edu	37	2	135160691	135160691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:135160691C>T	uc002ttv.1	+	11	1658	c.1513C>T	c.(1513-1515)CTT>TTT	p.L505F		NM_002410	NP_002401	Q09328	MGT5A_HUMAN	N-acetylglucosaminyltransferase V	505	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0964)		CCTGCAGTTCCTTCTTCGAGA	0.428													11	17					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135745484	135745484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:135745484C>T	uc002tue.1	-	7	989	c.958G>A	c.(958-960)GAA>AAA	p.E320K	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.E207K|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.E48K|YSK4_uc002tui.3_Missense_Mutation_p.E337K	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	320							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		TGAGTGATTTCAATTTTGTTA	0.398													12	26					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138373853	138373853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:138373853G>A	uc002tva.1	+	17	3445	c.3445G>A	c.(3445-3447)GAA>AAA	p.E1149K	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCTCCTGAATGAAAATTGCTT	0.453													38	80					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138425364	138425364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:138425364G>A	uc002tva.1	+	26	4585	c.4585G>A	c.(4585-4587)GTT>ATT	p.V1529I		NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AAAAATTTGGGTTTATGGCGT	0.363													2	4					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141215150	141215150	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:141215150C>T	uc002tvj.1	-	61	10668	c.9696G>A	c.(9694-9696)GGG>GGA	p.G3232G		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3232	Extracellular (Potential).|LDL-receptor class B 32.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACTTGGTTTTCCCATCAGTCC	0.428										TSP Lung(27;0.18)			58	72					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141232864	141232864	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:141232864G>A	uc002tvj.1	-	60	10440	c.9468C>T	c.(9466-9468)GGC>GGT	p.G3156G		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3156	Extracellular (Potential).|LDL-receptor class B 30.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTCCAACACGGCCAATATGAG	0.368										TSP Lung(27;0.18)			29	55					0	0	1	0	0
RIF1	55183	broad.mit.edu	37	2	152279474	152279474	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:152279474C>T	uc002txm.2	+	8	834	c.704C>T	c.(703-705)TCA>TTA	p.S235L	RIF1_uc002txl.2_Missense_Mutation_p.S235L|RIF1_uc010fnv.1_Missense_Mutation_p.S199L|RIF1_uc002txn.2_Missense_Mutation_p.S235L|RIF1_uc002txo.2_Missense_Mutation_p.S235L|RIF1_uc010zby.1_Intron	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	235					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		AAATTAATCTCAGAACTTCAG	0.308													9	22					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152374874	152374874	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:152374874C>T	uc010fnx.2	-	128	17846	c.17655G>A	c.(17653-17655)CTG>CTA	p.L5885L	NEB_uc002txr.2_Silent_p.L2308L|NEB_uc002txt.3_Silent_p.L390L	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5885	Nebulin 161.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GAAGCTGCTCCAGATTATCGG	0.453													65	107					0	0	1	0	0
CCDC148	130940	broad.mit.edu	37	2	159195525	159195525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:159195525C>T	uc002tzq.2	-	6	822	c.559G>A	c.(559-561)GAT>AAT	p.D187N	CCDC148_uc002tzr.2_Missense_Mutation_p.D35N|CCDC148_uc010foh.2_Intron|CCDC148_uc010foi.1_Missense_Mutation_p.D134N|CCDC148_uc010foj.1_Missense_Mutation_p.D35N|CCDC148_uc010fok.1_Missense_Mutation_p.D101N|CCDC148_uc002tzs.1_Missense_Mutation_p.D187N	NM_138803	NP_620158	Q8NFR7	CC148_HUMAN	coiled-coil domain containing 148	187	Potential.									ovary(2)	2						TCTGAAAGATCATTTTCTATT	0.308													19	35					0	0	1	0	0
TANC1	85461	broad.mit.edu	37	2	160032940	160032940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:160032940G>A	uc002uag.2	+	13	2087	c.1813G>A	c.(1813-1815)GGA>AGA	p.G605R	TANC1_uc010fol.1_Missense_Mutation_p.G499R|TANC1_uc010zcm.1_Missense_Mutation_p.G597R|TANC1_uc010fom.1_Missense_Mutation_p.G411R|TANC1_uc002uai.1_RNA	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	605						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						ACCTGATTATGGAGATACGCT	0.303													11	24					0	0	1	0	0
LY75	4065	broad.mit.edu	37	2	160742969	160742969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:160742969G>A	uc002ubc.3	-	5	944	c.875C>T	c.(874-876)TCA>TTA	p.S292L	LY75_uc002ubb.3_Missense_Mutation_p.S292L|LY75_uc010fos.2_Missense_Mutation_p.S292L|LY75_uc010fot.1_Missense_Mutation_p.S292L	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	292	Extracellular (Potential).|C-type lectin 1.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TTTGTGGTCTGACCATTCCCA	0.378													15	25					0	0	1	0	0
DPP4	1803	broad.mit.edu	37	2	162849873	162849873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:162849873C>T	uc002ubz.2	-	26	2782	c.2221G>A	c.(2221-2223)GGA>AGA	p.G741R	DPP4_uc010fpb.2_Missense_Mutation_p.G417R	NM_001935	NP_001926	P27487	DPP4_HUMAN	dipeptidylpeptidase IV	741	Extracellular (Potential).				cell adhesion|endothelial cell migration|negative regulation of extracellular matrix disassembly|positive regulation of cell proliferation|proteolysis|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation|T cell costimulation	apical plasma membrane|cell surface|endocytic vesicle|extracellular region|integral to membrane|invadopodium membrane|lamellipodium membrane|membrane raft	aminopeptidase activity|dipeptidyl-peptidase activity|protease binding|protein homodimerization activity|receptor activity|receptor binding|serine-type endopeptidase activity			ovary(3)	3					Sitagliptin(DB01261)	CTAGCTATTCCATGGTCTTCA	0.353													45	65					0	0	1	0	0
COBLL1	22837	broad.mit.edu	37	2	165551510	165551510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:165551510G>A	uc010zcw.1	-	15	2831	c.2707C>T	c.(2707-2709)CCG>TCG	p.P903S	COBLL1_uc002ucp.2_Missense_Mutation_p.P836S|COBLL1_uc002ucq.2_Missense_Mutation_p.P798S|COBLL1_uc010zcx.1_Missense_Mutation_p.P844S|COBLL1_uc002ucn.2_Missense_Mutation_p.P264S|COBLL1_uc002uco.2_Missense_Mutation_p.P567S	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	874										ovary(2)|pancreas(1)	3						TTAGGCTTCGGTTTAAGGTTT	0.463													18	35					0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	166003308	166003308	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:166003308G>A	uc002ucx.2	-	12	2104	c.1612C>T	c.(1612-1614)CTT>TTT	p.L538F	SCN3A_uc002ucy.2_Missense_Mutation_p.L538F|SCN3A_uc002ucz.2_Missense_Mutation_p.L538F|SCN3A_uc002uda.1_Missense_Mutation_p.L407F|SCN3A_uc002udb.1_Missense_Mutation_p.L407F	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	538						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	ATGGAGAAAAGGAAGCTGCTT	0.433													27	49					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166848121	166848121	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:166848121C>T	uc010zcz.1	-	26	5649	c.5631G>A	c.(5629-5631)CAG>CAA	p.Q1877Q		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1888						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GCTCTTCCATCTGTATTCGTA	0.438													16	40					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166850909	166850909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:166850909C>T	uc010zcz.1	-	25	4584	c.4566G>A	c.(4564-4566)ATG>ATA	p.M1522I		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1533	IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AGTCAAAGACCATTCCTTGAA	0.353													5	12					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166909378	166909378	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:166909378C>T	uc010zcz.1	-	5	696	c.678G>A	c.(676-678)ACG>ACA	p.T226T	SCN1A_uc002udo.3_Silent_p.T95T|SCN1A_uc010fpk.2_Silent_p.T95T	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	226	Helical; Voltage-sensor; Name=S4 of repeat I; (By similarity).|I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TGACTGAAATCGTCTTCAATG	0.443													4	4					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168107343	168107343	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:168107343G>A	uc002udx.2	+	8	9459	c.9441G>A	c.(9439-9441)AAG>AAA	p.K3147K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.K2972K|XIRP2_uc010fpq.2_Silent_p.K2925K|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2972					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CCCCTAAAAAGGACAGTTATG	0.468													14	21					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169783743	169783743	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:169783743T>A	uc002ueo.1	-	26	3667	c.3541A>T	c.(3541-3543)AAA>TAA	p.K1181*	ABCB11_uc010zda.1_Nonsense_Mutation_p.K599*|ABCB11_uc010zdb.1_Nonsense_Mutation_p.K657*	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1181	Cytoplasmic (Potential).|ABC transporter 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	GGAATTTCTTTGGTGTTGTCT	0.443													32	66					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170062080	170062080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:170062080G>A	uc002ues.2	-	41	7837	c.7624C>T	c.(7624-7626)CGC>TGC	p.R2542C		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2542	LDL-receptor class B 27.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	ATGGGTACGCGGAAGTTTCCT	0.488													26	40					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170063416	170063416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:170063416G>A	uc002ues.2	-	39	7027	c.6814C>T	c.(6814-6816)CGT>TGT	p.R2272C		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2272	LDL-receptor class B 23.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CTGCCATAACGAATCACTTCA	0.393													36	50					0	0	1	0	0
GAD1	2571	broad.mit.edu	37	2	171710458	171710458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:171710458G>A	uc002ugi.2	+	14	1761	c.1339G>A	c.(1339-1341)GAC>AAC	p.D447N	GAD1_uc010fqc.2_Missense_Mutation_p.D66N	NM_000817	NP_000808	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 isoform GAD67	447					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	TGTCTCCTACGACACCGGGGA	0.478													42	77					0	0	1	0	0
RBM45	129831	broad.mit.edu	37	2	178985967	178985968	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:178985967_178985968CC>TT	uc002ulv.2	+	5	826_827	c.734_735CC>TT	c.(733-735)TCC>TTT	p.S245F		NM_152945	NP_694453	Q8IUH3	RBM45_HUMAN	RNA binding motif protein 45	247					cell differentiation|nervous system development	cytoplasm|nucleus	nucleotide binding|RNA binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.00957)|all cancers(119;0.037)			GAAGCAATCTCCAAACGCTTGT	0.356													13	25					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179442220	179442220	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:179442220G>A	uc010zfg.1	-	273	61362	c.61138C>T	c.(61138-61140)CTT>TTT	p.L20380F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.L14075F|TTN_uc010zfi.1_Missense_Mutation_p.L14008F|TTN_uc010zfj.1_Missense_Mutation_p.L13883F|uc002umv.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21307							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGGGATCAAGGACAATTGTT	0.333													6	12					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179577951	179577951	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:179577951C>T	uc010zfg.1	-	90	23402	c.23178G>A	c.(23176-23178)AGG>AGA	p.R7726R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.R4387R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8653							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTGGTATTTCCTTCCACTAC	0.438													6	9					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179604839	179604839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:179604839C>T	uc010zfh.1	-	46	12832	c.12608G>A	c.(12607-12609)GGA>GAA	p.G4203E	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.G4136E|TTN_uc010zfj.1_Missense_Mutation_p.G4011E|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGGTCCCTTCCCTGTACCTC	0.468													17	19					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179611502	179611502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:179611502G>A	uc002unb.2	-	46	15849	c.15625C>T	c.(15625-15627)CTT>TTT	p.L5209F	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGAACTGGAAGACCTTCAACT	0.378													12	29					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179611561	179611561	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:179611561A>C	uc002unb.2	-	46	15790	c.15566T>G	c.(15565-15567)CTG>CGG	p.L5189R	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTTTTGGTCAGAGGTTCAAT	0.388													12	22					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179702223	179702223	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:179702223G>A	uc002unf.1	-	13	2055	c.1998C>T	c.(1996-1998)TCC>TCT	p.S666S	CCDC141_uc002une.1_Silent_p.S116S	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	666							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			GAAGGCTGAGGGAGGAGCTGA	0.587													10	30					0	0	1	0	0
PDE1A	5136	broad.mit.edu	37	2	183050720	183050720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:183050720G>A	uc002uos.2	-	14	1547	c.1463C>T	c.(1462-1464)CCA>CTA	p.P488L	PDE1A_uc010zfp.1_Missense_Mutation_p.P384L|PDE1A_uc002uoq.1_Missense_Mutation_p.P488L|PDE1A_uc010zfq.1_Missense_Mutation_p.P488L|PDE1A_uc002uor.2_Missense_Mutation_p.P472L|PDE1A_uc002uou.2_Missense_Mutation_p.P454L	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	488	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			GGAGTAGTCTGGGGAATAGGA	0.463													13	27					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189872820	189872820	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:189872820C>T	uc002uqj.1	+	47	3594	c.3477C>T	c.(3475-3477)CCC>CCT	p.P1159P		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1159	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	ATCCAGGTCCCATTGGACCAC	0.453													5	14					0	0	1	0	0
COL5A2	1290	broad.mit.edu	37	2	189916147	189916147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:189916147G>A	uc002uqk.2	-	42	3105	c.2830C>T	c.(2830-2832)CGT>TGT	p.R944C	COL5A2_uc010frx.2_Missense_Mutation_p.R520C	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	944	Cell attachment site (Potential).				axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			GGGTCCCCACGAAGACCTGGA	0.617													15	16					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207173259	207173259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:207173259C>T	uc002vbp.2	+	5	4257	c.4007C>T	c.(4006-4008)CCT>CTT	p.P1336L		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1336							nucleic acid binding|zinc ion binding			ovary(3)	3						TCAAATATCCCTCTTCAGTCA	0.373													11	28					0	0	1	0	0
DYTN	391475	broad.mit.edu	37	2	207572058	207572058	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:207572058G>A	uc002vbr.1	-	3	381	c.264C>T	c.(262-264)CTC>CTT	p.L88L		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	88						plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		GGCTCAGAGTGAGTTCCGGAG	0.512													5	10					0	0	1	0	0
ERBB4	2066	broad.mit.edu	37	2	212286822	212286822	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:212286822C>T	uc002veg.1	-	24	2972	c.2874G>A	c.(2872-2874)ATG>ATA	p.M958I	ERBB4_uc002veh.1_Missense_Mutation_p.M958I|ERBB4_uc010zji.1_Missense_Mutation_p.M948I|ERBB4_uc010zjj.1_Missense_Mutation_p.M948I	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	958	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CAGCATCAATCATCCAACCTG	0.353										TSP Lung(8;0.080)			11	36					0	0	1	0	0
ERBB4	2066	broad.mit.edu	37	2	212293154	212293154	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:212293154G>A	uc002veg.1	-	22	2796	c.2698C>T	c.(2698-2700)CAG>TAG	p.Q900*	ERBB4_uc002veh.1_Nonsense_Mutation_p.Q900*|ERBB4_uc010zji.1_Nonsense_Mutation_p.Q890*|ERBB4_uc010zjj.1_Nonsense_Mutation_p.Q890*	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	900	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		ACGTCACTCTGATGGGTGAAT	0.299										TSP Lung(8;0.080)			25	40					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215845251	215845251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:215845251C>T	uc002vew.2	-	31	4916	c.4696G>A	c.(4696-4698)GAA>AAA	p.E1566K	ABCA12_uc002vev.2_Missense_Mutation_p.E1248K|ABCA12_uc010zjn.1_Missense_Mutation_p.E493K	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1566	ABC transporter 1.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CCAAAGGCTTCCTTGAGGTAA	0.488													24	40					0	0	1	0	0
TNS1	7145	broad.mit.edu	37	2	218713599	218713599	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:218713599G>A	uc002vgt.2	-	17	1664	c.1266C>T	c.(1264-1266)GTC>GTT	p.V422V	TNS1_uc002vgr.2_Silent_p.V422V|TNS1_uc002vgs.2_Silent_p.V422V|TNS1_uc010zjv.1_Silent_p.V422V|TNS1_uc010fvj.1_Silent_p.V490V|TNS1_uc010fvk.1_Silent_p.V547V|TNS1_uc010fvi.1_Silent_p.V109V	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	422						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		AGGCCCCGGGGACAGGCTCGT	0.642													27	41					0	0	1	0	0
AAMP	14	broad.mit.edu	37	2	219130370	219130370	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:219130370G>A	uc002vhk.2	-	8	999	c.915C>T	c.(913-915)TCC>TCT	p.S305S	AAMP_uc002vhj.2_Silent_p.S286S|AAMP_uc010fvo.2_Silent_p.S305S|AAMP_uc002vhl.2_Silent_p.S306S	NM_001087	NP_001078	Q13685	AAMP_HUMAN	angio-associated, migratory cell protein	305					angiogenesis|cell differentiation|positive regulation of endothelial cell migration|smooth muscle cell migration	cell surface|cytoplasm|plasma membrane	heparin binding			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;7.19e-07)|all cancers(144;0.000131)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGCTGGGCTGGGAGGCCACAG	0.577													36	45					0	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219886908	219886908	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:219886908G>A	uc002vjl.1	-	17	3048	c.2964C>T	c.(2962-2964)CTC>CTT	p.L988L	CCDC108_uc002vjm.3_5'Flank	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	988						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGCTGCTGGTGAGCCCAACGC	0.677													4	4					0	0	1	0	0
ATG9A	79065	broad.mit.edu	37	2	220089864	220089864	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:220089864T>C	uc002vke.1	-	7	631	c.445A>G	c.(445-447)AAG>GAG	p.K149E	ATG9A_uc002vkd.1_RNA|ATG9A_uc002vkf.1_Missense_Mutation_p.K149E	NM_001077198	NP_001070666	Q7Z3C6	ATG9A_HUMAN	APG9 autophagy 9-like 1	149	Helical; (Potential).				autophagic vacuole assembly|protein transport	autophagic vacuole membrane|cytoplasmic vesicle|Golgi apparatus|integral to membrane|late endosome membrane				skin(1)	1		Renal(207;0.0474)		Epithelial(149;1.37e-06)|all cancers(144;0.000222)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TAGATGAACTTGATAAGCCGG	0.512													36	59					0	0	1	0	0
ACCN4	55515	broad.mit.edu	37	2	220396518	220396518	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:220396518G>A	uc002vma.2	+	2	1016	c.1002G>A	c.(1000-1002)GCG>GCA	p.A334A	ACCN4_uc010fwi.1_Silent_p.A334A|ACCN4_uc010fwj.1_Silent_p.A334A|ACCN4_uc002vly.1_Silent_p.A334A|ACCN4_uc002vlz.2_Silent_p.A334A|ACCN4_uc002vmb.2_5'UTR	NM_182847	NP_878267	Q96FT7	ACCN4_HUMAN	amiloride-sensitive cation channel 4 isoform 2	334	Extracellular (Potential).					integral to plasma membrane	sodium channel activity|sodium ion transmembrane transporter activity			ovary(2)	2		Renal(207;0.0183)		Epithelial(149;5.47e-10)|all cancers(144;9e-08)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.0086)|READ - Rectum adenocarcinoma(5;0.156)		CCTTCAACGCGGACCCGCGGA	0.627													31	57					0	0	1	0	0
INHA	3623	broad.mit.edu	37	2	220439993	220439993	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:220439993C>T	uc002vmk.1	+	2	990	c.846C>T	c.(844-846)TAC>TAT	p.Y282Y		NM_002191	NP_002182	P05111	INHA_HUMAN	inhibin alpha subunit precursor	282					cell cycle arrest|cell surface receptor linked signaling pathway|cell-cell signaling|erythrocyte differentiation|hemoglobin biosynthetic process|induction of apoptosis|negative regulation of B cell differentiation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|ovarian follicle development|positive regulation of follicle-stimulating hormone secretion|regulation of cell proliferation|response to external stimulus|skeletal system development	inhibin A complex|inhibin-betaglycan-ActRII complex	cytokine activity|growth factor activity|hormone activity|signal transducer activity			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;4.58e-07)|all cancers(144;4.31e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		GGATCGTGTACCCTCCCAGTT	0.612													23	58					0	0	1	0	0
SLC4A3	6508	broad.mit.edu	37	2	220501404	220501404	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:220501404C>T	uc002vmp.3	+	16	2612	c.2343C>T	c.(2341-2343)TTC>TTT	p.F781F	SLC4A3_uc002vmo.3_Silent_p.F808F|SLC4A3_uc010fwm.2_Silent_p.F331F|SLC4A3_uc010fwn.1_Silent_p.F290F	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	781	Membrane (anion exchange).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCACCTAGTTCTGCCGAGCCC	0.642													20	29					0	0	1	0	0
MOGAT1	116255	broad.mit.edu	37	2	223559162	223559162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:223559162G>A	uc010fws.1	+	4	608	c.560G>A	c.(559-561)GGG>GAG	p.G187E	MOGAT1_uc010fwt.1_Missense_Mutation_p.G147E	NM_058165	NP_477513	Q96PD6	MOGT1_HUMAN	monoacylglycerol O-acyltransferase 1	187					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			breast(1)	1		Renal(207;0.0183)		Epithelial(121;4.13e-10)|all cancers(144;2.06e-07)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0105)		ATTGTCCTTGGGGGTGCAAAA	0.443													17	26					0	0	1	0	0
GPR55	9290	broad.mit.edu	37	2	231774973	231774973	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:231774973G>A	uc002vrg.2	-	2	898	c.705C>T	c.(703-705)TTC>TTT	p.F235F	GPR55_uc002vrf.2_RNA|GPR55_uc010fxs.1_Silent_p.F235F	NM_005683	NP_005674	Q9Y2T6	GPR55_HUMAN	G protein-coupled receptor 55	235	Helical; Name=6; (Potential).				activation of phospholipase C activity|bone resorption|negative regulation of osteoclast differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of Rho protein signal transduction	integral to plasma membrane	cannabinoid receptor activity			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;1.04e-11)|all cancers(144;4.22e-09)|LUSC - Lung squamous cell carcinoma(224;0.0119)|Lung(119;0.0145)		AGGAGACCACGAAGACAGCCA	0.587													30	40					0	0	1	0	0
NGEF	25791	broad.mit.edu	37	2	233746933	233746934	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:233746933_233746934CC>TT	uc002vts.2	-	13	2047_2048	c.1799_1800GG>AA	c.(1798-1800)AGG>AAA	p.R600K	NGEF_uc010zmm.1_Missense_Mutation_p.R323K|NGEF_uc010fyg.1_Missense_Mutation_p.R508K	NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	600	PH.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		ACTTGGTCCTCCTGTTGGGGGC	0.614													12	24					0	0	1	0	0
NGEF	25791	broad.mit.edu	37	2	233757678	233757678	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:233757678C>T	uc002vts.2	-	7	1320	c.1072G>A	c.(1072-1074)GAC>AAC	p.D358N	NGEF_uc010zmm.1_Missense_Mutation_p.D81N|NGEF_uc010fyg.1_Missense_Mutation_p.D266N	NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	358	DH.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		GAGAAGTGGTCGGCCGCATAA	0.572													47	61					0	0	1	0	0
UGT1A1	54658	broad.mit.edu	37	2	234669590	234669590	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:234669590G>A	uc002vvb.2	+	1	672	c.657G>A	c.(655-657)CAG>CAA	p.Q219Q	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron|UGT1A9_uc002vva.2_Intron|UGT1A1_uc010znc.1_Silent_p.Q219Q	NM_000463	NP_000454	P22309	UD11_HUMAN	UDP glycosyltransferase 1 family, polypeptide A1	219					bilirubin conjugation|digestion|estrogen metabolic process|flavone metabolic process|heme catabolic process	endoplasmic reticulum membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding|steroid binding			central_nervous_system(1)|skin(1)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;4.1e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000435)|Lung(119;0.00211)|LUSC - Lung squamous cell carcinoma(224;0.0054)	Abacavir(DB01048)|Adenine(DB00173)|Diclofenac(DB00586)|Estradiol(DB00783)|Ezetimibe(DB00973)|Irinotecan(DB00762)|Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|Propofol(DB00818)|Rifampin(DB01045)|Troglitazone(DB00197)	CCTTTTCACAGAACTTTCTGT	0.522													54	97					0	0	1	0	0
HJURP	55355	broad.mit.edu	37	2	234749306	234749306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:234749306G>A	uc002vvg.2	-	8	2186	c.2120C>T	c.(2119-2121)ACC>ATC	p.T707I	HJURP_uc010znd.1_Missense_Mutation_p.T646I|HJURP_uc010zne.1_Missense_Mutation_p.T615I	NM_018410	NP_060880	Q8NCD3	HJURP_HUMAN	Holliday junction recognition protein	707					cell cycle|CenH3-containing nucleosome assembly at centromere|centromeric core chromatin assembly|chromosome segregation|regulation of DNA binding|regulation of protein complex assembly	condensed chromosome kinetochore|cytoplasm|nucleolus|nucleoplasm	DNA binding|histone binding			ovary(1)	1		Breast(86;0.00204)|all_lung(227;0.00433)|Renal(207;0.00685)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0719)|Lung SC(224;0.128)		Epithelial(121;2.01e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000186)|Lung(119;0.00521)|LUSC - Lung squamous cell carcinoma(224;0.00829)		CGGTCTGACGGTGTTGTCCAC	0.562													45	64					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234863777	234863777	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:234863777C>T	uc002vvh.2	+	11	1285	c.1245C>T	c.(1243-1245)GCC>GCT	p.A415A	TRPM8_uc010fyj.2_Silent_p.A103A	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	415	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	CTCTCACAGCCTTCAGCACCA	0.473													15	41					0	0	1	0	0
OR6B2	389090	broad.mit.edu	37	2	240969565	240969565	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:240969565G>A	uc002vyr.2	-	2	328	c.282C>T	c.(280-282)TTC>TTT	p.F94F	OR6B2_uc010zoc.1_Silent_p.F94F	NM_001005853	NP_001005853	Q6IFH4	OR6B2_HUMAN	olfactory receptor, family 6, subfamily B,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.4e-29)|all cancers(36;2.08e-27)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)		TGCACCCGACGAAAGAGATGC	0.572													5	50					0	0	1	0	0
OR6B3	150681	broad.mit.edu	37	2	240985208	240985208	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:240985208G>A	uc010zoe.1	-	1	282	c.282C>T	c.(280-282)TTC>TTT	p.F94F	PRR21_uc010zod.1_5'Flank	NM_173351	NP_775486	Q8NGW1	OR6B3_HUMAN	olfactory receptor, family 6, subfamily B,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;1.05e-29)|all cancers(36;3.52e-28)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		TGCACCCGACGAAAGAGATGC	0.567													6	29					0	0	1	0	0
ANO7	50636	broad.mit.edu	37	2	242142881	242142881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:242142881G>A	uc002wax.2	+	9	1122	c.1019G>A	c.(1018-1020)GGG>GAG	p.G340E		NM_001001891	NP_001001891	Q6IWH7	ANO7_HUMAN	transmembrane protein 16G isoform NGEP long	340	Cytoplasmic (Potential).					cell junction|chloride channel complex|cytosol	chloride channel activity			pancreas(2)|central_nervous_system(1)	3						AGGTACTTCGGGGAGAAGGTG	0.647													3	8					0	0	1	0	0
ATG4B	23192	broad.mit.edu	37	2	242606102	242606102	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:242606102C>A	uc002wbv.2	+	8	684	c.581C>A	c.(580-582)GCG>GAG	p.A194E	ATG4B_uc002wbu.2_Missense_Mutation_p.A120E|ATG4B_uc002wbw.2_Missense_Mutation_p.A194E|ATG4B_uc010zox.1_Missense_Mutation_p.A180E|ATG4B_uc010zoy.1_Missense_Mutation_p.A120E|ATG4B_uc010fzp.2_Missense_Mutation_p.A194E|ATG4B_uc010zoz.1_Missense_Mutation_p.A120E|ATG4B_uc002wby.2_5'Flank	NM_013325	NP_037457	Q9Y4P1	ATG4B_HUMAN	APG4 autophagy 4 homolog B isoform a	194					autophagic vacuole assembly|protein transport|proteolysis	cytoplasm	cysteine-type peptidase activity|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.44e-33)|all cancers(36;5.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.75e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0848)		GGCGCCACTGCGTTTCCTGCA	0.582													10	6					0.010729	0.0107586	1	1	0
ANGPT4	51378	broad.mit.edu	37	20	870942	870942	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:870942G>A	uc002wei.2	-	2	482	c.379C>T	c.(379-381)CAG>TAG	p.Q127*	ANGPT4_uc010zpn.1_Nonsense_Mutation_p.Q121*	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	127	Potential.				anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						GGGGCCGTCTGATTCTGGGCC	0.612													36	31					0	0	1	0	0
SIRPG	55423	broad.mit.edu	37	20	1616161	1616161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:1616161G>A	uc002wfm.1	-	4	898	c.833C>T	c.(832-834)CCC>CTC	p.P278L	SIRPG_uc002wfn.1_Intron|SIRPG_uc002wfo.1_Intron|uc002wfp.1_Intron	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	278	Extracellular (Potential).|Ig-like C1-type 2.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						TAGGCTCTGGGGGTAGAACTT	0.547													92	50					0	0	1	0	0
CHGB	1114	broad.mit.edu	37	20	5903317	5903317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:5903317G>A	uc002wmg.2	+	4	833	c.527G>A	c.(526-528)GGG>GAG	p.G176E	CHGB_uc010zqz.1_5'UTR	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	176						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						TATCAAAAAGGGGAGCGAGGG	0.488													31	33					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9388640	9388640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:9388640C>T	uc002wnf.2	+	20	1824	c.1688C>T	c.(1687-1689)CCA>CTA	p.P563L	PLCB4_uc010gbw.1_Missense_Mutation_p.P563L|PLCB4_uc010gbx.2_Missense_Mutation_p.P575L|PLCB4_uc002wne.2_Missense_Mutation_p.P563L|PLCB4_uc002wnh.2_Missense_Mutation_p.P410L	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	563					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AATATCCATCCATATTTGTCC	0.433													45	157					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9438100	9438100	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:9438100C>T	uc002wnf.2	+	32	3136	c.3000C>T	c.(2998-3000)ATC>ATT	p.I1000I	PLCB4_uc010gbw.1_Silent_p.I1000I|PLCB4_uc010gbx.2_Silent_p.I1012I|PLCB4_uc002wne.2_Silent_p.I1000I|PLCB4_uc002wnh.2_Silent_p.I847I	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	1000					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AAACAGAAATCAAAATTCAGA	0.358													46	23					0	0	1	0	0
TMEM90B	79953	broad.mit.edu	37	20	24565570	24565570	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:24565570T>G	uc002wtw.1	+	3	1192	c.559T>G	c.(559-561)TTC>GTC	p.F187V		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	187	Helical; (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						CCTCAGTGTCTTCTCCATGCT	0.577													35	95					0	0	1	0	0
FRG1B	284802	broad.mit.edu	37	20	29625877	29625877	+	Missense_Mutation	SNP	G	A	A	rs7266938	by1000genomes	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:29625877G>A	uc010ztl.1	+	2	63	c.31G>A	c.(31-33)GCC>ACC	p.A11T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GTACAGAATCGCCCTGAAATC	0.353													3	61					0	0	1	0	0
HM13	81502	broad.mit.edu	37	20	30154057	30154057	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:30154057C>T	uc002wwe.2	+	11	1107	c.993C>T	c.(991-993)GTC>GTT	p.V331V	HM13_uc002wwc.2_Silent_p.V331V|HM13_uc002wwd.2_Silent_p.V331V|HM13_uc002wwf.2_Silent_p.V207V|HM13_uc010gdu.2_Silent_p.V207V	NM_030789	NP_110416	Q8TCT9	HM13_HUMAN	minor histocompatibility antigen 13 isoform 1	331	Helical; (Potential).				membrane protein proteolysis	cell surface|endoplasmic reticulum membrane|integral to membrane|plasma membrane	aspartic-type endopeptidase activity|protein binding			breast(1)	1	all_cancers(5;3.44e-05)|Lung NSC(7;4.38e-06)|all_lung(7;7.65e-06)|all_hematologic(12;0.158)|Ovarian(7;0.198)		all cancers(5;0.000479)|Colorectal(19;0.00202)|COAD - Colon adenocarcinoma(19;0.0264)			GTTTTCCTGTCCTGGTGGCGC	0.622													19	54					0	0	1	0	0
COX4I2	84701	broad.mit.edu	37	20	30231314	30231314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:30231314G>A	uc002wwj.1	+	4	430	c.355G>A	c.(355-357)GTG>ATG	p.V119M	COX4I2_uc002wwi.2_Missense_Mutation_p.V119M	NM_032609	NP_115998	Q96KJ9	COX42_HUMAN	cytochrome c oxidase subunit IV isoform 2	119					cellular respiration		cytochrome-c oxidase activity			ovary(1)	1	all_cancers(5;7.12e-06)|Lung NSC(7;3.95e-06)|all_epithelial(3;4.36e-06)|all_lung(7;6.68e-06)|all_hematologic(12;0.158)|Ovarian(7;0.198)		Epithelial(4;1.01e-05)|all cancers(5;9.46e-05)|OV - Ovarian serous cystadenocarcinoma(3;0.00121)|Colorectal(19;0.0055)|COAD - Colon adenocarcinoma(19;0.0264)			CGCAGCTCTGGTGATTTGGTG	0.537													33	41					0	0	1	0	0
TTLL9	164395	broad.mit.edu	37	20	30530764	30530764	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:30530764G>A	uc010gdx.1	+	15	1513	c.1260G>A	c.(1258-1260)CGG>CGA	p.R420R	TTLL9_uc002wwy.1_RNA|TTLL9_uc002wwz.1_RNA|TTLL9_uc002wxa.1_RNA|TTLL9_uc002wxb.1_RNA|TTLL9_uc010zto.1_RNA|TTLL9_uc002wxc.2_Silent_p.R322R|TTLL9_uc010ztp.1_RNA	NM_001008409	NP_001008409	Q3SXZ7	TTLL9_HUMAN	tubulin tyrosine ligase-like family, member 9	420					protein modification process	cilium|microtubule|microtubule basal body	ATP binding|tubulin-tyrosine ligase activity			ovary(2)	2			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			TCAACGATCGGAAGAAACAAC	0.537													58	176					0	0	1	0	0
BPIL1	80341	broad.mit.edu	37	20	31609544	31609544	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:31609544G>A	uc002wyj.2	+	15	1468	c.1274G>A	c.(1273-1275)GGA>GAA	p.G425E		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	425						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						TTGGCCATGGGAATTGCCCTC	0.453													60	58					0	0	1	0	0
BPIL3	128859	broad.mit.edu	37	20	31622000	31622000	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:31622000T>A	uc010zuc.1	+	3	206	c.206T>A	c.(205-207)GTG>GAG	p.V69E	BPIL3_uc010zud.1_Missense_Mutation_p.V8E	NM_174897	NP_777557	Q8NFQ5	BPIL3_HUMAN	bactericidal/permeability-increasing	69						extracellular region	lipid binding			ovary(1)|pancreas(1)	2						AGTTTGAAGGTGAAGGATGTC	0.537													101	98					0	0	1	0	0
EPB41L1	2036	broad.mit.edu	37	20	34809819	34809819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:34809819G>A	uc002xfb.2	+	20	2644	c.2473G>A	c.(2473-2475)GAG>AAG	p.E825K	EPB41L1_uc002xeu.2_Missense_Mutation_p.E723K|EPB41L1_uc002xev.2_Missense_Mutation_p.E824K|EPB41L1_uc002xew.2_Missense_Mutation_p.E716K|EPB41L1_uc002xex.2_Missense_Mutation_p.E645K|EPB41L1_uc002xey.2_Missense_Mutation_p.E575K|EPB41L1_uc002xez.2_Missense_Mutation_p.E723K|EPB41L1_uc010gfq.2_Missense_Mutation_p.E923K	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	825	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					GACAAGGATCGAGAAGCGAAT	0.552													32	103					0	0	1	0	0
DHX35	60625	broad.mit.edu	37	20	37650494	37650494	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:37650494C>T	uc002xjh.2	+	16	1520	c.1509C>T	c.(1507-1509)GGC>GGT	p.G503G	DHX35_uc010zwa.1_Silent_p.G348G|DHX35_uc010zwb.1_Silent_p.G348G|DHX35_uc010zwc.1_Silent_p.G472G	NM_021931	NP_068750	Q9H5Z1	DHX35_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 35	503						catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|nucleic acid binding			lung(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				GAAACTTCGGCTGTTCTCAGG	0.428													110	129					0	0	1	0	0
LPIN3	64900	broad.mit.edu	37	20	39984649	39984649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:39984649C>T	uc002xjx.2	+	14	1869	c.1778C>T	c.(1777-1779)TCC>TTC	p.S593F	LPIN3_uc010ggh.2_Missense_Mutation_p.S594F|LPIN3_uc010zwf.1_RNA	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	593	C-LIP.				fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				TACAAGAAGTCCCTCCGCCTC	0.498													21	84					0	0	1	0	0
EMILIN3	90187	broad.mit.edu	37	20	39991690	39991690	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:39991690C>T	uc002xjy.1	-	4	743	c.519G>A	c.(517-519)AGG>AGA	p.R173R		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	173						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				CTGGGCCTTTCCTTCCTGGGA	0.562													6	6					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	41100974	41100974	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:41100974C>T	uc002xkg.2	-	8	1566	c.1382G>A	c.(1381-1383)CGA>CAA	p.R461Q	PTPRT_uc010ggj.2_Missense_Mutation_p.R461Q	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	461	Extracellular (Potential).|Fibronectin type-III 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CAGCAAGAGTCGCAGCCGGAT	0.602													22	75					0	0	1	0	0
MYBL2	4605	broad.mit.edu	37	20	42331501	42331501	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:42331501C>T	uc002xlb.1	+	8	1538	c.1323C>T	c.(1321-1323)CCC>CCT	p.P441P	MYBL2_uc010zwj.1_Silent_p.P417P|MYBL2_uc002xla.1_Silent_p.P441P	NM_002466	NP_002457	P10244	MYBB_HUMAN	MYB-related protein B	441						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(3)|kidney(2)	5		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			GCCTCACGCCCAAGAGCACAC	0.532													24	89					0	0	1	0	0
SEMG1	6406	broad.mit.edu	37	20	43836308	43836308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:43836308C>T	uc002xni.2	+	2	427	c.370C>T	c.(370-372)CAC>TAC	p.H124Y	SEMG1_uc002xnj.2_Missense_Mutation_p.H124Y|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Missense_Mutation_p.H124Y	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	124					insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				AGGTCATTTTCACAGGGTAGT	0.418													17	61					0	0	1	0	0
ELMO2	63916	broad.mit.edu	37	20	45012130	45012130	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:45012130G>A	uc002xrt.1	-	10	891	c.681C>T	c.(679-681)TCC>TCT	p.S227S	ELMO2_uc002xrs.1_5'Flank|ELMO2_uc002xru.1_Silent_p.S227S|ELMO2_uc010zxr.1_Silent_p.S227S|ELMO2_uc010zxs.1_Silent_p.S44S|ELMO2_uc002xrw.2_Silent_p.S44S|ELMO2_uc002xrx.1_Silent_p.S227S	NM_133171	NP_573403	Q96JJ3	ELMO2_HUMAN	engulfment and cell motility 2	227					apoptosis|cell chemotaxis|phagocytosis	cytoskeleton|cytosol|membrane	lyase activity|receptor tyrosine kinase binding|SH3 domain binding			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TCTCCTGGTTGGAGCTGTGTC	0.423													25	61					0	0	1	0	0
NCOA3	8202	broad.mit.edu	37	20	46265205	46265205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:46265205G>A	uc002xtk.2	+	12	2280	c.2075G>A	c.(2074-2076)GGG>GAG	p.G692E	NCOA3_uc010ght.1_Missense_Mutation_p.G702E|NCOA3_uc002xtl.2_Missense_Mutation_p.G692E|NCOA3_uc002xtm.2_Missense_Mutation_p.G692E|NCOA3_uc002xtn.2_Missense_Mutation_p.G692E|NCOA3_uc010zyc.1_Missense_Mutation_p.G487E	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	692					androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						CTGCAGAATGGGAATTCACCA	0.483													57	44					0	0	1	0	0
STAU1	6780	broad.mit.edu	37	20	47734556	47734556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:47734556C>T	uc002xud.2	-	11	1678	c.1267G>A	c.(1267-1269)GAG>AAG	p.E423K	STAU1_uc002xua.2_Missense_Mutation_p.E342K|STAU1_uc002xub.2_Missense_Mutation_p.E348K|STAU1_uc002xuc.2_Missense_Mutation_p.E342K|STAU1_uc002xue.2_Missense_Mutation_p.E342K|STAU1_uc002xuf.2_Missense_Mutation_p.E348K|STAU1_uc002xug.2_Missense_Mutation_p.E423K	NM_017453	NP_059347	O95793	STAU1_HUMAN	staufen isoform b	423						microtubule associated complex|rough endoplasmic reticulum|stress granule	double-stranded RNA binding			ovary(4)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(12;0.000644)|Colorectal(8;0.198)			TGGGCGACCTCGGGCACCATG	0.517													49	121					0	0	1	0	0
DDX27	55661	broad.mit.edu	37	20	47835896	47835896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:47835896G>A	uc002xuh.2	+	1	65	c.4G>A	c.(4-6)GTA>ATA	p.V2I		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	2						nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GTGACGCATGGTACTTGCGCA	0.607													8	12					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872159	51872159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:51872159C>T	uc002xwo.2	+	2	3118	c.2162C>T	c.(2161-2163)CCA>CTA	p.P721L		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	721					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			TGCTCCAGCCCAAGTTCAAGC	0.572													41	39					0	0	1	0	0
GNAS	2778	broad.mit.edu	37	20	57429947	57429947	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:57429947C>T	uc002xzw.2	+	1	1912	c.1627C>T	c.(1627-1629)CCG>TCG	p.P543S	GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			TCCGCCTACTCCGCGGCCTAC	0.711			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			3	2					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57767174	57767174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:57767174C>T	uc002yan.2	+	1	1100	c.1100C>T	c.(1099-1101)TCG>TTG	p.S367L		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	367						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CACAGCCTTTCGGAGCACAGC	0.532													12	10					0	0	1	0	0
OSBPL2	9885	broad.mit.edu	37	20	60847270	60847270	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:60847270C>T	uc002yck.1	+	5	550	c.348C>T	c.(346-348)CTC>CTT	p.L116L	OSBPL2_uc002ycl.1_Silent_p.L104L|OSBPL2_uc011aah.1_Silent_p.L24L	NM_144498	NP_653081	Q9H1P3	OSBL2_HUMAN	oxysterol-binding protein-like protein 2 isoform	116					lipid transport		lipid binding			ovary(1)|central_nervous_system(1)	2	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;1.33e-06)			ACGTGTACCTCATCCACAGGG	0.582													13	60					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61513506	61513506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:61513506G>A	uc002ydr.1	-	16	4066	c.3802C>T	c.(3802-3804)CCA>TCA	p.P1268S	DIDO1_uc002yds.1_Missense_Mutation_p.P1268S	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1268	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GGTGGTTCTGGAAGAGGGGGC	0.647													54	144					0	0	1	0	0
EEF1A2	1917	broad.mit.edu	37	20	62120282	62120282	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr20:62120282T>G	uc002yfd.1	-	6	1354	c.1253A>C	c.(1252-1254)TAC>TCC	p.Y418S	EEF1A2_uc002yfe.1_Missense_Mutation_p.Y418S|EEF1A2_uc010gkg.1_Intron	NM_001958	NP_001949	Q05639	EF1A2_HUMAN	eukaryotic translation elongation factor 1 alpha	418						nucleus	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0	all_cancers(38;9.45e-12)		BRCA - Breast invasive adenocarcinoma(10;1.22e-05)			GAGAGGCGGGTACTGGGAGAA	0.667													7	33					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10941911	10941911	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr21:10941911G>A	uc002yip.1	-	14	1160	c.792C>T	c.(790-792)ATC>ATT	p.I264I	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.I246I|TPTE_uc002yir.1_Silent_p.I226I|TPTE_uc010gkv.1_Silent_p.I126I	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	264	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CCCTTACCTTGATTGGATTTC	0.313													37	98					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10971341	10971341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr21:10971341C>T	uc002yip.1	-	5	384	c.16G>A	c.(16-18)GAT>AAT	p.D6N	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.D6N|TPTE_uc002yir.1_Missense_Mutation_p.D6N|TPTE_uc010gkv.1_Intron	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	6					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TCAGTCGGATCAGGACTAAAG	0.378													9	44					0	0	1	0	0
BAGE2	85319	broad.mit.edu	37	21	11058278	11058278	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr21:11058278C>T	uc002yit.1	-	3	370	c.162G>A	c.(160-162)GTG>GTA	p.V54V	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CATTTCTCTTCACAGCATTTG	0.408													7	163					0	0	1	0	0
C21orf99	149992	broad.mit.edu	37	21	14437592	14437592	+	RNA	SNP	A	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr21:14437592A>C	uc002yja.3	+	9		c.2262A>C				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						gccatggctcacacctgtaat	0.149													3	14					0	0	1	0	0
LIPI	149998	broad.mit.edu	37	21	15537690	15537690	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr21:15537690T>C	uc002yjm.2	-	6	828	c.818A>G	c.(817-819)AAC>AGC	p.N273S	LIPI_uc010gkw.1_Missense_Mutation_p.N176S	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	252					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		TCTCTGGTGGTTGCATTTAAT	0.308													16	22					0	0	1	0	0
NRIP1	8204	broad.mit.edu	37	21	16337512	16337512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr21:16337512G>A	uc002yjx.2	-	4	3600	c.3002C>T	c.(3001-3003)TCA>TTA	p.S1001L		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	1001					androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		ACCTGGGTATGAAAATGTCCT	0.453													4	20					0	0	1	0	0
KRTAP8-1	337879	broad.mit.edu	37	21	32185366	32185366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr21:32185366G>A	uc002you.2	-	1	205	c.173C>T	c.(172-174)TCG>TTG	p.S58L		NM_175857	NP_787053	Q8IUC2	KRA81_HUMAN	keratin associated protein 8-1	58						intermediate filament					0						AGCAAATGGCGAGTATCTCCT	0.557													30	82					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32496853	32496853	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr21:32496853G>A	uc002yow.1	-	28	4765	c.4293C>T	c.(4291-4293)GCC>GCT	p.A1431A	TIAM1_uc011adk.1_Silent_p.A1431A|TIAM1_uc011adl.1_Silent_p.A1371A	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1431					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						CCCTGCTCATGGCCGGCCTGG	0.562													34	65					0	0	1	0	0
TTC3	7267	broad.mit.edu	37	21	38572549	38572549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr21:38572549C>T	uc002yvz.2	+	45	5972	c.5867C>T	c.(5866-5868)TCC>TTC	p.S1956F	TTC3_uc002ywa.2_Missense_Mutation_p.S1956F|TTC3_uc002ywb.2_Missense_Mutation_p.S1956F|TTC3_uc010gnf.2_Missense_Mutation_p.S1721F|TTC3_uc002ywc.2_Missense_Mutation_p.S1646F	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	1956					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				GGTGCAAGTTCCTGTGAAATA	0.428													15	36					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41465764	41465764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr21:41465764G>A	uc002yyq.1	-	21	4186	c.3734C>T	c.(3733-3735)TCC>TTC	p.S1245F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1245	Fibronectin type-III 4.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AATTCTGTAGGAAAACGAGTC	0.483													13	29					0	0	1	0	0
MX1	4599	broad.mit.edu	37	21	42817404	42817404	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr21:42817404C>T	uc002yzh.2	+	14	1985	c.1038C>T	c.(1036-1038)ATC>ATT	p.I346I	MX1_uc002yzi.2_Silent_p.I346I|MX1_uc010goq.2_Silent_p.I346I	NM_001144925	NP_001138397	P20591	MX1_HUMAN	myxovirus resistance protein 1	346					induction of apoptosis|response to virus|type I interferon-mediated signaling pathway	cytosol	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(19;3.18e-07)|all_epithelial(19;0.0277)				AAAATCAAATCAAGGAGACTC	0.408													30	47					0	0	1	0	0
TMPRSS3	64699	broad.mit.edu	37	21	43795855	43795856	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr21:43795855_43795856GG>AA	uc002zbb.2	-	12	1517_1518	c.1316_1317CC>TT	c.(1315-1317)TCC>TTT	p.S439F	TMPRSS3_uc002zay.2_Missense_Mutation_p.S196F|TMPRSS3_uc002zaz.2_Missense_Mutation_p.S312F|TMPRSS3_uc002zba.2_Missense_Mutation_p.S312F|TMPRSS3_uc002zbc.2_Missense_Mutation_p.S438F	NM_024022	NP_076927	P57727	TMPS3_HUMAN	transmembrane protease, serine 3 isoform 1	439	Peptidase S1.|Extracellular (Potential).				cellular sodium ion homeostasis|proteolysis	endoplasmic reticulum membrane|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity|sodium channel regulator activity			ovary(2)|breast(1)	3						AGTCCAGGAAGGAGGTGACACG	0.599													41	60					0	0	1	0	0
RSPH1	89765	broad.mit.edu	37	21	43896032	43896032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr21:43896032C>T	uc002zbg.2	-	8	958	c.853G>A	c.(853-855)GAG>AAG	p.E285K		NM_080860	NP_543136	Q8WYR4	RSPH1_HUMAN	testis-specific gene A2	285					meiosis	cytosol|nucleus				ovary(1)	1						TAGCGGAACTCCTCCTGGTCA	0.622													26	50					0	0	1	0	0
PFKL	5211	broad.mit.edu	37	21	45746145	45746145	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr21:45746145C>T	uc002zel.2	+	21	2252	c.2193C>T	c.(2191-2193)TTC>TTT	p.F731F	PFKL_uc002zek.2_Silent_p.F778F|PFKL_uc002zem.2_Silent_p.F318F|PFKL_uc002zen.2_Silent_p.F318F	NM_002626	NP_002617	P17858	K6PL_HUMAN	liver phosphofructokinase	731					fructose 6-phosphate metabolic process|glycolysis|protein oligomerization	6-phosphofructokinase complex	6-phosphofructokinase activity|ATP binding|fructose-6-phosphate binding|identical protein binding|kinase binding|metal ion binding				0				Colorectal(79;0.0811)		ACACTGATTTCGAGTGAGTTC	0.642													10	15					0	0	1	0	0
KRTAP10-10	353333	broad.mit.edu	37	21	46058075	46058075	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr21:46058075G>A	uc002zfq.2	+	1	803	c.741G>A	c.(739-741)CAG>CAA	p.Q247Q	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181688	NP_859016	P60014	KR10A_HUMAN	keratin associated protein 10-10	247						keratin filament					0						GCTCTGGCCAGAAGTCCAGCT	0.672													22	42					0	0	1	0	0
CECR6	27439	broad.mit.edu	37	22	17600953	17600953	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:17600953G>A	uc002zmb.2	-	1	1261	c.1065C>T	c.(1063-1065)ACC>ACT	p.T355T	CECR6_uc002zma.2_5'UTR|uc002zmc.2_5'Flank	NM_031890	NP_114096	Q9BXQ6	CECR6_HUMAN	cat eye syndrome chromosome region, candidate 6	355											0		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)		Colorectal(9;0.221)		ACAGCGCCATGGTGAGACGGA	0.692													17	30					0	0	1	0	0
TUBA8	51807	broad.mit.edu	37	22	18609535	18609535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:18609535C>T	uc002znv.1	+	4	863	c.790C>T	c.(790-792)CGC>TGC	p.R264C	TUBA8_uc002znr.2_Missense_Mutation_p.R198C|TUBA8_uc002znw.1_Missense_Mutation_p.R288C|TUBA8_uc002znx.1_Missense_Mutation_p.R111C	NM_018943	NP_061816	Q9NY65	TBA8_HUMAN	tubulin, alpha 8	264					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0						GCCCTACCCCCGCATCCACTT	0.567													30	59					0	0	1	0	0
TUBA8	51807	broad.mit.edu	37	22	18613813	18613813	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:18613813G>A	uc002znv.1	+	5	1333	c.1260G>A	c.(1258-1260)GAG>GAA	p.E420E	TUBA8_uc002znr.2_Silent_p.E354E|TUBA8_uc002znw.1_Silent_p.E444E|TUBA8_uc002znx.1_Intron	NM_018943	NP_061816	Q9NY65	TBA8_HUMAN	tubulin, alpha 8	420					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0						AATTTTCTGAGGCCAGGGAAG	0.493													24	59					0	0	1	0	0
USP18	11274	broad.mit.edu	37	22	18650086	18650086	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:18650086C>T	uc002zny.2	+	5	803	c.465C>T	c.(463-465)ATC>ATT	p.I155I		NM_017414	NP_059110	Q9UMW8	UBP18_HUMAN	ubiquitin specific protease 18	155					regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway|ubiquitin-dependent protein catabolic process	cytosol|nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			breast(1)	1						AGGACCAGATCACTGATGTGC	0.473													52	71					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26291180	26291180	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:26291180A>T	uc003abz.1	+	28	4851	c.4601A>T	c.(4600-4602)AAG>ATG	p.K1534M	MYO18B_uc003aca.1_Missense_Mutation_p.K1415M|MYO18B_uc010guy.1_Missense_Mutation_p.K1416M|MYO18B_uc010guz.1_Missense_Mutation_p.K1414M|MYO18B_uc011aka.1_Missense_Mutation_p.K688M|MYO18B_uc011akb.1_Missense_Mutation_p.K1047M	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1534	Potential.|Tail.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TTCCTCAGAAAGCGTCTGCAG	0.542													9	7					0	0	1	0	0
C22orf30	253143	broad.mit.edu	37	22	32072956	32072956	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:32072956G>A	uc003alo.1	-	6	5681	c.5625C>T	c.(5623-5625)TTC>TTT	p.F1875F		NM_173566	NP_775837	Q5THK1	PR14L_HUMAN	hypothetical protein LOC253143	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0						CGAATACCAGGAAGTGCCCGG	0.592													10	15					0	0	1	0	0
DEPDC5	9681	broad.mit.edu	37	22	32202147	32202147	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:32202147C>T	uc003als.2	+	18	1399	c.1257C>T	c.(1255-1257)TTC>TTT	p.F419F	DEPDC5_uc011als.1_Silent_p.F419F|DEPDC5_uc011alu.1_Silent_p.F419F|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Silent_p.F419F|DEPDC5_uc003alr.1_Silent_p.F419F|DEPDC5_uc011alt.1_Silent_p.F391F	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	419					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						GTAATAGTTTCACCCCACGAA	0.234													13	25					0	0	1	0	0
MYH9	4627	broad.mit.edu	37	22	36700148	36700148	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:36700148G>A	uc003apg.2	-	19	2514	c.2283C>T	c.(2281-2283)GTC>GTT	p.V761V	MYH9_uc003aph.1_Silent_p.V625V	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	761	Myosin head-like.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						CACGGAAGAAGACTTTGCTCT	0.602			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				20	35					0	0	1	0	0
ELFN2	114794	broad.mit.edu	37	22	37770908	37770908	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:37770908C>T	uc003asq.3	-	3	1453	c.667G>A	c.(667-669)GGC>AGC	p.G223S		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	223	LRRCT.|Extracellular (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					AGCGGGTAGCCGGCAAACTCC	0.657													9	16					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120911	38120911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:38120911C>T	uc003atr.2	+	7	2619	c.2348C>T	c.(2347-2349)CCC>CTC	p.P783L	TRIOBP_uc003atu.2_Missense_Mutation_p.P611L|TRIOBP_uc003atq.1_Missense_Mutation_p.P783L|TRIOBP_uc003ats.1_Missense_Mutation_p.P611L	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	783					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					ACCTCCTCTCCCAATAGAGCC	0.567													26	49					0	0	1	0	0
PLA2G6	8398	broad.mit.edu	37	22	38541528	38541528	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:38541528G>A	uc003auy.1	-	3	478	c.342C>T	c.(340-342)ATC>ATT	p.I114I	PLA2G6_uc003auz.1_Silent_p.I114I|PLA2G6_uc003ava.1_Silent_p.I114I|PLA2G6_uc003avb.2_Silent_p.I114I|PLA2G6_uc010gxk.1_Intron|PLA2G6_uc011ano.1_Silent_p.I114I	NM_003560	NP_003551	O60733	PA2G6_HUMAN	phospholipase A2, group VI isoform a	114					cardiolipin biosynthetic process|cell death|lipid catabolic process	centrosome|membrane				ovary(1)	1	Melanoma(58;0.045)				Quinacrine(DB01103)	GGTGGTTACGGATGAGGTCGG	0.567													11	16					0	0	1	0	0
PDGFB	5155	broad.mit.edu	37	22	39627804	39627804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:39627804C>T	uc003axf.2	-	4	1268	c.279G>A	c.(277-279)ATG>ATA	p.M93I	PDGFB_uc003axe.2_Missense_Mutation_p.M78I	NM_002608	NP_002599	P01127	PDGFB_HUMAN	platelet-derived growth factor beta isoform 1	93					activation of protein kinase B activity|cellular response to mycophenolic acid|embryonic placenta development|heart development|hemopoiesis|metanephric glomerular mesangial cell development|monocyte chemotaxis|negative regulation of phosphatidylinositol biosynthetic process|negative regulation of platelet activation|negative regulation of transcription, DNA-dependent|paracrine signaling|peptidyl-serine phosphorylation|peptidyl-tyrosine phosphorylation|platelet activation|platelet degranulation|positive regulation of blood vessel endothelial cell migration|positive regulation of calcium ion import|positive regulation of cell division|positive regulation of chemotaxis|positive regulation of cyclin-dependent protein kinase activity|positive regulation of DNA biosynthetic process|positive regulation of DNA replication|positive regulation of endothelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|positive regulation of glomerular filtration|positive regulation of glomerular mesangial cell proliferation|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein autophosphorylation|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription, DNA-dependent|reactive oxygen species metabolic process|transforming growth factor beta receptor signaling pathway	basolateral plasma membrane|cell surface|endoplasmic reticulum lumen|extracellular region|Golgi membrane|platelet alpha granule lumen	collagen binding|eukaryotic cell surface binding|growth factor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein heterodimerization activity|protein homodimerization activity|superoxide-generating NADPH oxidase activator activity		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(1)	373	Melanoma(58;0.04)				Becaplermin(DB00102)	ACTCGGCGATCATGGCCGGCT	0.647			T	COL1A1	DFSP								5	21					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	40015403	40015403	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:40015403C>T	uc003ayc.2	+	4	571	c.571C>T	c.(571-573)CGC>TGC	p.R191C	CACNA1I_uc003ayd.2_Missense_Mutation_p.R191C|CACNA1I_uc003aye.2_Missense_Mutation_p.R106C|CACNA1I_uc003ayf.2_Missense_Mutation_p.R106C	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	191	I.|Helical; Name=S4 of repeat I; (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	AGCCATCAACCGCGTGCCCAG	0.622													30	80					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	40080475	40080475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:40080475C>T	uc003ayc.2	+	36	5999	c.5999C>T	c.(5998-6000)CCA>CTA	p.P2000L	CACNA1I_uc003ayd.2_Missense_Mutation_p.P1965L|CACNA1I_uc003aye.2_Missense_Mutation_p.P1915L|CACNA1I_uc003ayf.2_Missense_Mutation_p.P1880L	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	2000	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CTGCGGTCACCAAGGGTCAAC	0.627													8	17					0	0	1	0	0
TNRC6B	23112	broad.mit.edu	37	22	40662400	40662400	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:40662400G>A	uc011aor.1	+	5	2377	c.2166G>A	c.(2164-2166)TGG>TGA	p.W722*	TNRC6B_uc003aym.2_Intron|TNRC6B_uc003ayn.3_Nonsense_Mutation_p.W722*|TNRC6B_uc003ayo.2_Nonsense_Mutation_p.W526*	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	722					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						CTTCCTCTTGGAATGAGAATC	0.527													11	14					0	0	1	0	0
TNRC6B	23112	broad.mit.edu	37	22	40711325	40711325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:40711325C>T	uc011aor.1	+	20	4928	c.4717C>T	c.(4717-4719)CCC>TCC	p.P1573S	TNRC6B_uc003aym.2_Missense_Mutation_p.P769S|TNRC6B_uc003ayn.3_Missense_Mutation_p.P1463S|TNRC6B_uc003ayo.2_Missense_Mutation_p.P1320S	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	1573					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						GTCCCCAGATCCCATAGGACA	0.458													19	39					0	0	1	0	0
MCAT	27349	broad.mit.edu	37	22	43533179	43533179	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:43533179C>A	uc003bdl.1	-	3	686	c.637G>T	c.(637-639)GAA>TAA	p.E213*	MCAT_uc003bdm.1_Intron	NM_173467	NP_775738	Q8IVS2	FABD_HUMAN	mitochondrial malonyltransferase isoform a	213					fatty acid biosynthetic process	mitochondrion	[acyl-carrier-protein] S-malonyltransferase activity|binding			ovary(1)	1		Ovarian(80;0.0694)				TTGCAGTGTTCCCGGGCTTCC	0.537											OREG0026613	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	65	100					2.54232e-27	2.57235e-27	1	1	0
TTLL12	23170	broad.mit.edu	37	22	43570367	43570367	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:43570367G>A	uc003bdq.2	-	8	1109	c.1077C>T	c.(1075-1077)TTC>TTT	p.F359F	TTLL12_uc003bdr.1_Silent_p.F359F	NM_015140	NP_055955	Q14166	TTL12_HUMAN	tubulin tyrosine ligase-like family, member 12	359	TTL.				protein modification process		tubulin-tyrosine ligase activity			central_nervous_system(1)	1		Ovarian(80;0.221)|Glioma(61;0.222)				TCTCGCAGGGGAACTGGTTCA	0.692													12	29					0	0	1	0	0
KIAA1644	85352	broad.mit.edu	37	22	44681356	44681356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr22:44681356C>T	uc003bet.2	-	4	684	c.551G>A	c.(550-552)GGA>GAA	p.G184E		NM_001099294	NP_001092764	Q3SXP7	K1644_HUMAN	hypothetical protein LOC85352 precursor	184	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1		all_neural(38;0.0762)|Ovarian(80;0.105)|Glioma(61;0.222)				GTGAGCATCTCCCCGCAATGT	0.642													33	79					0	0	1	0	0
LRRN1	57633	broad.mit.edu	37	3	3887578	3887578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:3887578C>T	uc003bpt.3	+	2	2014	c.1253C>T	c.(1252-1254)TCG>TTG	p.S418L	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	418	LRRCT.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		ATCCAGGATTCGAGTGAACAG	0.498													17	112					0	0	1	0	0
FANCD2	2177	broad.mit.edu	37	3	10089604	10089604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:10089604C>T	uc003buw.2	+	16	1360	c.1282C>T	c.(1282-1284)CTT>TTT	p.L428F	FANCD2_uc003bux.1_Missense_Mutation_p.L428F|FANCD2_uc003buy.1_Missense_Mutation_p.L428F|FANCD2_uc010hcw.1_5'Flank	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	428					DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		ACTCAAGGTTCTTAAGGATAT	0.413			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				91	165					0	0	1	0	0
IRAK2	3656	broad.mit.edu	37	3	10276145	10276145	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:10276145G>A	uc003bve.1	+	11	1351	c.1275G>A	c.(1273-1275)AAG>AAA	p.K425K		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	425	Protein kinase.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						TCCCACAGAAGGACTTACTCC	0.572													15	57					0	0	1	0	0
SLC6A11	6538	broad.mit.edu	37	3	10861488	10861488	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:10861488C>T	uc003bvz.2	+	3	517	c.483C>T	c.(481-483)TGC>TGT	p.C161C	SLC6A11_uc003bvy.1_Silent_p.C161C	NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	161	Extracellular (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		TGAGCAACTGCTTCACTACTG	0.532													37	118					0	0	1	0	0
SLC6A1	6529	broad.mit.edu	37	3	11078575	11078575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:11078575G>A	uc010hdq.2	+	16	2134	c.1723G>A	c.(1723-1725)GAA>AAA	p.E575K		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	575	Cytoplasmic (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	CCAGCCCAGCGAAGACATCGT	0.642													26	81					0	0	1	0	0
NUP210	23225	broad.mit.edu	37	3	13407591	13407591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:13407591C>T	uc003bxv.1	-	14	1870	c.1787G>A	c.(1786-1788)GGG>GAG	p.G596E	NUP210_uc003bxx.2_Missense_Mutation_p.G268E	NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	596	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					CGGCAGCCTCCCTACAGAAAG	0.423													17	15					0	0	1	0	0
NUP210	23225	broad.mit.edu	37	3	13429817	13429817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:13429817C>T	uc003bxv.1	-	5	753	c.670G>A	c.(670-672)GAG>AAG	p.E224K		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	224	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TAGACAGCCTCCTGGATGCGA	0.577													55	41					0	0	1	0	0
NUP210	23225	broad.mit.edu	37	3	13438930	13438930	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:13438930G>A	uc003bxv.1	-	3	446	c.363C>T	c.(361-363)ATC>ATT	p.I121I		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	121	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TGGTGGAGACGATCTGGATGT	0.612													41	33					0	0	1	0	0
HDAC11	79885	broad.mit.edu	37	3	13546028	13546028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:13546028C>T	uc003bxy.2	+	10	1022	c.889C>T	c.(889-891)CTT>TTT	p.L297F	HDAC11_uc010heb.2_3'UTR|HDAC11_uc011aux.1_Missense_Mutation_p.L105F|HDAC11_uc011auy.1_Missense_Mutation_p.L246F	NM_024827	NP_079103	Q96DB2	HDA11_HUMAN	histone deacetylase 11 isoform 1	297	Histone deacetylase.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex|plasma membrane	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription factor binding			ovary(2)	2						GGTGCCCATCCTTATGGTGAC	0.612													49	47					0	0	1	0	0
FGD5	152273	broad.mit.edu	37	3	14861741	14861741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:14861741C>T	uc003bzc.2	+	1	1273	c.1163C>T	c.(1162-1164)CCC>CTC	p.P388L	FGD5_uc011avk.1_Missense_Mutation_p.P388L	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	388					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						GAGGAGAACCCCATGGTGGGG	0.612													17	50					0	0	1	0	0
PLCL2	23228	broad.mit.edu	37	3	17109539	17109539	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:17109539G>A	uc011awc.1	+	8	3267	c.3162G>A	c.(3160-3162)TGG>TGA	p.W1054*	PLCL2_uc011awd.1_Nonsense_Mutation_p.W936*	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	1062					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						GCTTTACCTGGAATATTACCA	0.408													25	84					0	0	1	0	0
NGLY1	55768	broad.mit.edu	37	3	25781078	25781078	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:25781078G>A	uc003cdl.2	-	5	979	c.871C>T	c.(871-873)CGA>TGA	p.R291*	NGLY1_uc010hfg.2_Nonsense_Mutation_p.R291*|NGLY1_uc003cdm.2_Nonsense_Mutation_p.R291*|NGLY1_uc011awo.1_Nonsense_Mutation_p.R249*|NGLY1_uc003cdk.2_Intron	NM_018297	NP_060767	Q96IV0	NGLY1_HUMAN	N-glycanase 1 isoform 1	291					glycoprotein catabolic process	cytoplasm	metal ion binding|peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity|protein binding			breast(1)	1						CTTGGGAATCGATTGCTGAAC	0.383													44	118					0	0	1	0	0
SLC4A7	9497	broad.mit.edu	37	3	27436557	27436557	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:27436557G>A	uc003cdv.2	-	19	2797	c.2726C>T	c.(2725-2727)CCT>CTT	p.P909L	SLC4A7_uc011awu.1_RNA|SLC4A7_uc011awv.1_RNA|SLC4A7_uc003cdu.3_Missense_Mutation_p.P790L|SLC4A7_uc011aww.1_Missense_Mutation_p.P918L|SLC4A7_uc011awx.1_Missense_Mutation_p.P905L|SLC4A7_uc011awy.1_Missense_Mutation_p.P901L|SLC4A7_uc011awz.1_RNA|SLC4A7_uc011axa.1_Missense_Mutation_p.P790L|SLC4A7_uc011axb.1_Missense_Mutation_p.P905L|SLC4A7_uc010hfl.2_Missense_Mutation_p.P459L|SLC4A7_uc003cdw.2_Missense_Mutation_p.P785L	NM_003615	NP_003606	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate	909	Helical; (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|central_nervous_system(1)|skin(1)	5						GGTCCACCAAGGATTATCTCC	0.368													17	53					0	0	1	0	0
RBMS3	27303	broad.mit.edu	37	3	30032595	30032595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:30032595C>T	uc003cel.2	+	14	1432	c.1202C>T	c.(1201-1203)CCC>CTC	p.P401L	RBMS3_uc003cek.2_Missense_Mutation_p.P385L|RBMS3_uc010hfq.2_Missense_Mutation_p.P398L|RBMS3_uc003cem.2_Missense_Mutation_p.P383L|RBMS3_uc010hfr.2_Missense_Mutation_p.P385L	NM_001003793	NP_001003793	Q6XE24	RBMS3_HUMAN	RNA binding motif, single stranded interacting	401						cytoplasm	nucleotide binding|RNA binding			central_nervous_system(1)	1		Ovarian(412;0.0956)				GATACCTCTCCCCAGACAGTG	0.493													30	26					0	0	1	0	0
GADL1	339896	broad.mit.edu	37	3	30819689	30819689	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:30819689G>A	uc003cep.2	-	14	1421	c.1374C>T	c.(1372-1374)TTC>TTT	p.F458F		NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	458					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	GTTTTGCCCAGAACTCGGGTC	0.343													39	38					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38793921	38793921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:38793921G>A	uc003ciq.2	-	11	1544	c.1544C>T	c.(1543-1545)TCA>TTA	p.S515L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	515					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CTCAGGGAGTGAGATATCTCG	0.602													17	37					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38835492	38835492	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:38835492G>A	uc003ciq.2	-	1	10	c.10C>T	c.(10-12)CCC>TCC	p.P4S		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	4					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GATCCAATGGGGAATTCCATC	0.473													49	49					0	0	1	0	0
CCDC13	152206	broad.mit.edu	37	3	42784475	42784475	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:42784475G>A	uc003cly.3	-	8	984	c.900C>T	c.(898-900)GTC>GTT	p.V300V		NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	300	Potential.									ovary(1)	1						GGTCTGGATAGACAGACAACT	0.552													116	94					0	0	1	0	0
CCBP2	1238	broad.mit.edu	37	3	42906414	42906414	+	Silent	SNP	G	A	A	rs138793399	byFrequency	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:42906414G>A	uc003cme.2	+	3	599	c.420G>A	c.(418-420)CTG>CTA	p.L140L	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmf.2_Silent_p.L140L|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Intron	NM_001296	NP_001287	O00590	CCBP2_HUMAN	chemokine binding protein 2	140	Helical; Name=3; (Potential).				chemotaxis|immune response|multicellular organismal development	integral to plasma membrane	C-X-C chemokine receptor activity			lung(4)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.241)		GCATGAGCCTGGACAAGTACC	0.512													26	120					0	0	1	0	0
KIAA1143	57456	broad.mit.edu	37	3	44795030	44795030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:44795030G>A	uc011bac.1	-	3	347	c.268C>T	c.(268-270)CCA>TCA	p.P90S		NM_020696	NP_065747	Q96AT1	K1143_HUMAN	hypothetical protein LOC57456	90											0				BRCA - Breast invasive adenocarcinoma(193;0.00847)|KIRC - Kidney renal clear cell carcinoma(197;0.0465)|Kidney(197;0.0582)		CCATCGGCTGGAGTTGGTTCT	0.338													30	28					0	0	1	0	0
CCR2	729230	broad.mit.edu	37	3	46401276	46401276	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:46401276C>T	uc003cpn.3	+	3	1535	c.1050C>T	c.(1048-1050)CTC>CTT	p.L350L		NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	350	Cytoplasmic (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		CACAAGGACTCCTCGATGGTC	0.493													49	53					0	0	1	0	0
LTF	4057	broad.mit.edu	37	3	46497358	46497358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:46497358C>T	uc003cpq.2	-	4	465	c.427G>A	c.(427-429)GGA>AGA	p.G143R	LTF_uc003fzr.2_Missense_Mutation_p.G99R|LTF_uc010hjh.2_Missense_Mutation_p.G143R|LTF_uc003cpr.2_Missense_Mutation_p.G130R	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	143	Transferrin-like 1.	Carbonate 1; via amide nitrogen.			cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	ACATTCCATCCAGCGGTCCTG	0.557													28	30					0	0	1	0	0
RTP3	83597	broad.mit.edu	37	3	46539609	46539609	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:46539609G>A	uc003cps.1	+	1	125	c.57G>A	c.(55-57)GTG>GTA	p.V19V		NM_031440	NP_113628	Q9BQQ7	RTP3_HUMAN	transmembrane protein 7	19	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste|protein targeting to membrane	cytoplasm|integral to membrane	protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		TGCGGGAGGTGAAGCCATGGC	0.587													29	53					0	0	1	0	0
NBEAL2	23218	broad.mit.edu	37	3	47042819	47042819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:47042819C>T	uc003cqp.2	+	29	4714	c.4535C>T	c.(4534-4536)CCC>CTC	p.P1512L	NBEAL2_uc010hjm.1_Missense_Mutation_p.P889L|NBEAL2_uc010hjn.1_5'Flank	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	1512							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		AAAGAGGCCCCCGTGGGGGTC	0.607													24	54					0	0	1	0	0
LAMB2	3913	broad.mit.edu	37	3	49168397	49168397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:49168397G>A	uc003cwe.2	-	7	1200	c.901C>T	c.(901-903)CAT>TAT	p.H301Y	LAMB2_uc003cwf.1_Missense_Mutation_p.H301Y	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	301	Laminin EGF-like 1.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CCCTCAGCATGGGCTGGTGCC	0.597													60	38					0	0	1	0	0
IQCF1	132141	broad.mit.edu	37	3	51930911	51930911	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:51930911C>T	uc003dbv.2	-	3	207	c.109_splice	c.e3-1	p.A37_splice	IQCF1_uc003dbq.3_Splice_Site	NM_152397	NP_689610	Q8N6M8	IQCF1_HUMAN	IQ motif containing F1											ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		GAGTTTTAGCCTGAAAAGGAA	0.383													29	92					0	0	1	0	0
SEMA3G	56920	broad.mit.edu	37	3	52472016	52472016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:52472016G>A	uc003dea.1	-	14	1709	c.1709C>T	c.(1708-1710)GCC>GTC	p.A570V		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	570	Ig-like C2-type.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		GCACTGCAGGGCAGGGTTGCC	0.697													24	28					0	0	1	0	0
DNAH12	201625	broad.mit.edu	37	3	57528453	57528453	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:57528453G>T	uc003dit.2	-	2	326	c.145C>A	c.(145-147)CAG>AAG	p.Q49K	DNAH12_uc003diu.2_Missense_Mutation_p.Q49K	NM_178504	NP_848599	Q6ZR08	DYH12_HUMAN	dynein heavy chain domain 2 isoform 1	49	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			pancreas(1)|skin(1)	2						TTCTGCTGCTGCTCCTTGGAT	0.363													23	38					7.26314e-15	7.30327e-15	1	1	0
CADPS	8618	broad.mit.edu	37	3	62751564	62751564	+	Silent	SNP	A	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:62751564A>C	uc003dll.2	-	2	897	c.537T>G	c.(535-537)GCT>GCG	p.A179A	CADPS_uc003dlm.2_Silent_p.A179A|CADPS_uc003dln.2_Silent_p.A179A	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	179					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		AACTCTGCACAGCGTTCATGA	0.522													14	66					0	0	1	0	0
FAM19A4	151647	broad.mit.edu	37	3	68788334	68788334	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:68788334C>T	uc003dnh.1	-	5	746	c.303G>A	c.(301-303)CAG>CAA	p.Q101Q	FAM19A4_uc003dni.1_Silent_p.Q101Q	NM_182522	NP_872328	Q96LR4	F19A4_HUMAN	family with sequence similarity 19 (chemokine	101						extracellular region				skin(2)	2		Lung NSC(201;0.0198)		BRCA - Breast invasive adenocarcinoma(55;1.38e-05)|Epithelial(33;0.000124)|LUSC - Lung squamous cell carcinoma(21;0.0248)|KIRC - Kidney renal clear cell carcinoma(39;0.0729)|Kidney(39;0.0904)		ACCACCATTTCTGAATCACAA	0.398													26	108					0	0	1	0	0
ROBO2	6092	broad.mit.edu	37	3	77530252	77530252	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:77530252C>T	uc003dpy.3	+	4	1192	c.549C>T	c.(547-549)ATC>ATT	p.I183I	ROBO2_uc003dpz.2_Silent_p.I183I|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Silent_p.I183I	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	183	Ig-like C2-type 2.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		TTTAACAGATCCGTGGTGGAA	0.289													60	41					0	0	1	0	0
ROBO2	6092	broad.mit.edu	37	3	77693930	77693930	+	Missense_Mutation	SNP	C	T	T	rs11915149		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:77693930C>T	uc003dpy.3	+	25	4653	c.4010C>T	c.(4009-4011)TCT>TTT	p.S1337F	ROBO2_uc003dpz.2_Missense_Mutation_p.S1402F|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.S1341F	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1337	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		ACAGCTTCTTCTAAGGGATCC	0.517													41	28					0	0	1	0	0
ROBO1	6091	broad.mit.edu	37	3	78683168	78683168	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:78683168G>A	uc003dqe.2	-	24	3606	c.3398C>T	c.(3397-3399)CCT>CTT	p.P1133L	ROBO1_uc003dqb.2_Missense_Mutation_p.P1094L|ROBO1_uc003dqc.2_Missense_Mutation_p.P1033L|ROBO1_uc003dqd.2_Missense_Mutation_p.P1088L|ROBO1_uc010hoh.2_Missense_Mutation_p.P325L|ROBO1_uc011bgl.1_Missense_Mutation_p.P705L	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	1133	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		GATAGTTGGAGGAACTGTGTC	0.398													42	34					0	0	1	0	0
OR5H15	403274	broad.mit.edu	37	3	97887546	97887546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:97887546G>A	uc011bgu.1	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GTGAGGACATGGAAGAGGAAA	0.363													36	58					0	0	1	0	0
COL8A1	1295	broad.mit.edu	37	3	99514396	99514396	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:99514396G>A	uc003dtg.1	+	5	1896	c.1651G>A	c.(1651-1653)GGT>AGT	p.G551S	COL8A1_uc003dth.1_Missense_Mutation_p.G551S|COL8A1_uc003dti.1_Missense_Mutation_p.G552S	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	551	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						TGGTGCCCTTGGTCCTCAAGG	0.532													9	5					0	0	1	0	0
CEP97	79598	broad.mit.edu	37	3	101443558	101443558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:101443558G>A	uc003dvk.1	+	1	65	c.38G>A	c.(37-39)GGA>GAA	p.G13E	CEP97_uc010hpm.1_Missense_Mutation_p.G13E|CEP97_uc011bhf.1_Missense_Mutation_p.G13E|CEP97_uc003dvl.1_5'Flank	NM_024548	NP_078824	Q8IW35	CEP97_HUMAN	centrosomal protein 97kDa	13						centrosome|nucleus	protein binding			ovary(2)	2						TTGCCTCCCGGAGAAGGTAAG	0.532													33	34					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108719493	108719493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:108719493C>T	uc003dxl.2	-	21	2185	c.2098G>A	c.(2098-2100)GAA>AAA	p.E700K	MORC1_uc011bhn.1_Missense_Mutation_p.E679K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	700					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CTTTTCATTTCCCAAGAAGCG	0.373													15	69					0	0	1	0	0
DPPA2	151871	broad.mit.edu	37	3	109031524	109031524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:109031524C>T	uc003dxo.2	-	3	296	c.49G>A	c.(49-51)GAA>AAA	p.E17K		NM_138815	NP_620170	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	17						nucleus	nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)	3						TCATCTACTTCCCCCTCCAAG	0.398													37	102					0	0	1	0	0
DPPA4	55211	broad.mit.edu	37	3	109047786	109047786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:109047786G>A	uc003dxq.3	-	6	884	c.829C>T	c.(829-831)CCA>TCA	p.P277S	DPPA4_uc011bho.1_Missense_Mutation_p.S178F	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	277						nucleus	protein binding			upper_aerodigestive_tract(1)	1						TGCGGGGGTGGAAAATTGGAG	0.473													31	29					0	0	1	0	0
ZBED2	79413	broad.mit.edu	37	3	111312560	111312560	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:111312560C>T	uc003dxy.2	-	2	1374	c.489G>A	c.(487-489)AGG>AGA	p.R163R	CD96_uc003dxv.2_Intron|CD96_uc003dxw.2_Intron|CD96_uc003dxx.2_Intron|CD96_uc010hpy.1_Intron	NM_024508	NP_078784	Q9BTP6	ZBED2_HUMAN	zinc finger, BED domain containing 2	163							DNA binding|metal ion binding			skin(1)	1						CTGCCCTTTCCCTCCTAAGCA	0.602													74	82					0	0	1	0	0
PLCXD2	257068	broad.mit.edu	37	3	111427002	111427002	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:111427002C>T	uc003dya.2	+	2	979	c.393C>T	c.(391-393)ATC>ATT	p.I131I	PLCXD2_uc003dyb.2_Silent_p.I131I|PLCXD2_uc003dxz.2_Silent_p.I131I	NM_001134478	NP_001127950	Q0VAA5	PLCX2_HUMAN	phosphatidylinositol-specific phospholipase C, X	131	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(1)	1						TCTACTTCATCCATGGGCTTT	0.502													38	92					0	0	1	0	0
KIAA2018	205717	broad.mit.edu	37	3	113377447	113377447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:113377447G>A	uc003eam.2	-	7	3493	c.3082C>T	c.(3082-3084)CAT>TAT	p.H1028Y	KIAA2018_uc003eal.2_Missense_Mutation_p.H972Y	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1028					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						AAGTCAGGATGATCCATCTGA	0.353													34	83					0	0	1	0	0
GAP43	2596	broad.mit.edu	37	3	115395143	115395143	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:115395143G>A	uc003ebq.2	+	2	700	c.314G>A	c.(313-315)GGA>GAA	p.G105E	GAP43_uc003ebr.2_Missense_Mutation_p.G141E	NM_002045	NP_002036	P17677	NEUM_HUMAN	growth associated protein 43 isoform 2	105					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell differentiation|nervous system development|regulation of filopodium assembly|regulation of growth|response to wounding	cell junction|filopodium membrane|growth cone membrane|synapse	calmodulin binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.164)		GGCAAAGCAGGAGAAACTCCT	0.637													31	23					0	0	1	0	0
GOLGB1	2804	broad.mit.edu	37	3	121388158	121388158	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:121388158G>A	uc003eei.3	-	18	9333	c.9207C>T	c.(9205-9207)CTC>CTT	p.L3069L	GOLGB1_uc010hrc.2_Silent_p.L3074L|GOLGB1_uc003eej.3_Silent_p.L3035L	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	3069	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		TGGTATCGCAGAGCTGAATGG	0.493													27	100					0	0	1	0	0
GOLGB1	2804	broad.mit.edu	37	3	121445791	121445791	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:121445791A>G	uc003eei.3	-	5	626	c.500T>C	c.(499-501)CTT>CCT	p.L167P	GOLGB1_uc010hrc.2_Missense_Mutation_p.L167P|GOLGB1_uc003eej.3_Missense_Mutation_p.L128P|GOLGB1_uc011bjm.1_Missense_Mutation_p.L128P|GOLGB1_uc010hrd.1_Missense_Mutation_p.L167P	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	167	Potential.|Cytoplasmic (Potential).				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		TGCCTGAGTAAGCTGGGCTTG	0.413													30	65					0	0	1	0	0
SLC15A2	6565	broad.mit.edu	37	3	121650527	121650527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:121650527C>T	uc003eep.2	+	19	1859	c.1706C>T	c.(1705-1707)TCT>TTT	p.S569F	SLC15A2_uc011bjn.1_Missense_Mutation_p.S538F	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	569	Helical; (Potential).				protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	AAGAACTTTTCTCTGAATTTG	0.388													14	19					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	121980499	121980499	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:121980499G>A	uc003eev.3	+	4	989	c.617G>A	c.(616-618)TGG>TAG	p.W206*	CASR_uc003eew.3_Nonsense_Mutation_p.W206*	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	206	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TATTTCCGCTGGAACTGGGTG	0.522													57	145					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122002676	122002676	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:122002676C>T	uc003eev.3	+	7	2247	c.1875C>T	c.(1873-1875)TTC>TTT	p.F625F	CASR_uc003eew.3_Silent_p.F635F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	625	Helical; Name=1; (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TGGGCATTTTCCTGACAGCCT	0.552													20	47					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123348433	123348433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:123348433C>T	uc003ego.2	-	30	5284	c.5002G>A	c.(5002-5004)GAA>AAA	p.E1668K	uc003egk.2_RNA|MYLK_uc010hrr.2_Missense_Mutation_p.E103K|MYLK_uc011bjv.1_Missense_Mutation_p.E468K|MYLK_uc011bjw.1_Missense_Mutation_p.E1668K|MYLK_uc003egp.2_Missense_Mutation_p.E1599K|MYLK_uc003egq.2_Intron|MYLK_uc003egr.2_Intron|MYLK_uc003egs.2_Missense_Mutation_p.E1492K	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1668	Protein kinase.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		GCCAAGGTTTCGTTATCGTTG	0.557													54	51					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123512535	123512535	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:123512535A>T	uc003ego.2	-	4	436	c.154T>A	c.(154-156)TTC>ATC	p.F52I	MYLK_uc011bjw.1_Missense_Mutation_p.F52I|MYLK_uc003egp.2_Missense_Mutation_p.F52I|MYLK_uc003egq.2_Missense_Mutation_p.F52I|MYLK_uc003egr.2_Missense_Mutation_p.F52I|MYLK_uc003egs.2_5'UTR|MYLK_uc010hrs.1_Missense_Mutation_p.F52I|MYLK_uc003egu.1_Missense_Mutation_p.F62I	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	52	Ig-like C2-type 1.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		CGCCCTTCGAACTTGGCGGTG	0.602													9	38					0	0	1	0	0
SLC12A8	84561	broad.mit.edu	37	3	124896750	124896750	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:124896750A>C	uc003ehv.3	-	5	570	c.459T>G	c.(457-459)AAT>AAG	p.N153K	SLC12A8_uc003ehw.3_Missense_Mutation_p.N182K|SLC12A8_uc010hrz.1_Missense_Mutation_p.N18K	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	153					potassium ion transport	integral to membrane	symporter activity				0						CAGCCCAGATATTCCCGAGGC	0.532													36	37					0	0	1	0	0
C3orf22	152065	broad.mit.edu	37	3	126270845	126270845	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:126270845G>A	uc003ejb.2	-	3	539	c.210C>T	c.(208-210)GTC>GTT	p.V70V		NM_152533	NP_689746	Q8N5N4	CC022_HUMAN	hypothetical protein LOC152065	70											0				GBM - Glioblastoma multiforme(114;0.147)		CTTACCCTCGGACTGGGATGG	0.612													19	63					0	0	1	0	0
TPRA1	131601	broad.mit.edu	37	3	127292608	127292608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:127292608G>A	uc003ejl.2	-	10	1169	c.878C>T	c.(877-879)TCC>TTC	p.S293F	TPRA1_uc003ejm.2_RNA|TPRA1_uc003ejo.2_Missense_Mutation_p.S293F|TPRA1_uc010hsk.2_Silent_p.L238L|TPRA1_uc003ejn.2_Missense_Mutation_p.S293F	NM_016372	NP_057456	Q86W33	TPRA1_HUMAN	G protein-coupled receptor 175 isoform 1	293					aging|lipid metabolic process	integral to membrane	G-protein coupled receptor activity				0						GCATTTGTAGGAGAAGAGGAT	0.597													10	40					0	0	1	0	0
KBTBD12	166348	broad.mit.edu	37	3	127642780	127642780	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:127642780G>A	uc010hsr.2	+	1	879	c.876G>A	c.(874-876)AGG>AGA	p.R292R	KBTBD12_uc003ejy.3_Intron|KBTBD12_uc010hsq.2_Intron|KBTBD12_uc003eka.3_Intron|KBTBD12_uc003ejz.2_Silent_p.R292R	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	292										ovary(1)	1						CAAGACATAGGAGCTATGGGG	0.448													11	38					0	0	1	0	0
NPHP3	27031	broad.mit.edu	37	3	132407935	132407935	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:132407935G>A	uc003epe.1	-	20	2943	c.2866C>T	c.(2866-2868)CTA>TTA	p.L956L	NPHP3_uc003epd.1_Silent_p.L198L	NM_153240	NP_694972	Q7Z494	NPHP3_HUMAN	nephrocystin 3	956	TPR 4.				maintenance of organ identity|negative regulation of canonical Wnt receptor signaling pathway|photoreceptor cell maintenance|regulation of Wnt receptor signaling pathway, planar cell polarity pathway|Wnt receptor signaling pathway	cilium	protein binding			ovary(1)	1						AGAAGGCCTAGATCCTTGAGA	0.443													29	96					0	0	1	0	0
TF	7018	broad.mit.edu	37	3	133485235	133485235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:133485235C>T	uc003epu.1	+	17	3172	c.1444C>T	c.(1444-1446)CCC>TCC	p.P482S	TF_uc011blt.1_Missense_Mutation_p.P355S|TF_uc003epw.1_Intron|TF_uc003epv.1_Missense_Mutation_p.P482S	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	482	Transferrin-like 2.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	CTGGAACATCCCCATGGGCCT	0.537													106	120					0	0	1	0	0
WDR49	151790	broad.mit.edu	37	3	167240187	167240187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:167240187G>A	uc003fev.1	-	12	1940	c.1634C>T	c.(1633-1635)TCT>TTT	p.S545F	WDR49_uc003feu.1_Missense_Mutation_p.S370F|WDR49_uc011bpd.1_Intron|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	545										large_intestine(1)|ovary(1)|skin(1)	3						AGAAAATAAAGAAATTTCCTT	0.313													20	22					0	0	1	0	0
WDR49	151790	broad.mit.edu	37	3	167250754	167250754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:167250754C>T	uc003fev.1	-	8	1216	c.910G>A	c.(910-912)GGA>AGA	p.G304R	WDR49_uc003feu.1_Missense_Mutation_p.G129R|WDR49_uc011bpd.1_Missense_Mutation_p.G368R|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	304	WD 5.									large_intestine(1)|ovary(1)|skin(1)	3						ACAATTTCTCCATCATAACTC	0.373													28	22					0	0	1	0	0
KLHL6	89857	broad.mit.edu	37	3	183217608	183217608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:183217608G>A	uc003flr.2	-	4	975	c.917C>T	c.(916-918)TCG>TTG	p.S306L	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_Intron	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	306										haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			GGTGCGTTCCGAAATGATCTG	0.378													21	17					0	0	1	0	0
YEATS2	55689	broad.mit.edu	37	3	183454513	183454513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:183454513C>T	uc003fly.2	+	8	1015	c.820C>T	c.(820-822)CCT>TCT	p.P274S		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	274	YEATS.				histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			TAGAGAGCCTCCTTTTCACCT	0.408													46	40					0	0	1	0	0
HTR3E	285242	broad.mit.edu	37	3	183818295	183818295	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:183818295C>T	uc010hxq.2	+	2	556	c.90C>T	c.(88-90)ATC>ATT	p.I30I	HTR3E_uc003fml.3_Silent_p.I30I|HTR3E_uc003fmm.2_Silent_p.I45I|HTR3E_uc010hxr.2_Silent_p.I45I|HTR3E_uc003fmn.2_Silent_p.I45I	NM_182589	NP_872395	A5X5Y0	5HT3E_HUMAN	5-hydroxytryptamine receptor 3 subunit E	30	Extracellular (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.46e-10)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			CTTTCACCATCAATTGCTCAG	0.552													160	178					0	0	1	0	0
TPRG1	285386	broad.mit.edu	37	3	188956522	188956522	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:188956522G>A	uc003frv.1	+	9	1530	c.303G>A	c.(301-303)AAG>AAA	p.K101K	TPRG1_uc003frw.1_Silent_p.K101K	NM_198485	NP_940887	Q6ZUI0	TPRG1_HUMAN	tumor protein p63 regulated 1	101											0	all_cancers(143;6.12e-12)|all_hematologic(3;0.0359)|Ovarian(172;0.0925)	all_lung(153;8.23e-09)|Lung NSC(153;3.55e-06)|all_neural(597;0.0019)|Myeloproliferative disorder(1037;0.0255)	Lung(62;6.93e-06)	GBM - Glioblastoma multiforme(93;4.77e-14)		ATTCCTATAGGATAGACCACT	0.398													37	56					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189585657	189585657	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:189585657C>T	uc003fry.2	+	7	1007	c.918C>T	c.(916-918)TTC>TTT	p.F306F	TP63_uc003frx.2_Silent_p.F306F|TP63_uc003frz.2_Silent_p.F306F|TP63_uc010hzc.1_Silent_p.F306F|TP63_uc003fsa.2_Silent_p.F212F|TP63_uc003fsb.2_Silent_p.F212F|TP63_uc003fsc.2_Silent_p.F212F|TP63_uc003fsd.2_Silent_p.F212F|TP63_uc010hzd.1_Silent_p.F127F|TP63_uc003fse.1_Silent_p.F187F	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	306					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		TGTACAATTTCATGTGTAACA	0.398									Hay-Wells_syndrome	HNSCC(45;0.13)			19	49					0	0	1	0	0
CLDN1	9076	broad.mit.edu	37	3	190030809	190030809	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:190030809G>A	uc003fsh.2	-	2	460	c.240C>T	c.(238-240)ACC>ACT	p.T80T		NM_021101	NP_066924	O95832	CLD1_HUMAN	claudin 1	80	Extracellular (Potential).				calcium-independent cell-cell adhesion|interspecies interaction between organisms	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity			lung(1)	1	all_cancers(143;2.95e-10)|Ovarian(172;0.0512)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.015)		TCAAGGCACGGGTTGCTTGCA	0.448													61	212					0	0	1	0	0
CPN2	1370	broad.mit.edu	37	3	194061912	194061912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:194061912G>A	uc003fts.2	-	2	1610	c.1520C>T	c.(1519-1521)TCT>TTT	p.S507F		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	507					protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		CTGCTGAGGAGAGAGCTGGAC	0.642													19	13					0	0	1	0	0
APOD	347	broad.mit.edu	37	3	195298153	195298153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:195298153G>A	uc003fur.2	-	4	691	c.329C>T	c.(328-330)TCC>TTC	p.S110F	APOD_uc011bsx.1_Missense_Mutation_p.S110F	NM_001647	NP_001638	P05090	APOD_HUMAN	apolipoprotein D precursor	110					lipid metabolic process	extracellular space	lipid binding|lipid transporter activity|protein binding			ovary(2)	2	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)	Lung NSC(153;0.191)	Epithelial(36;1e-21)|all cancers(36;9.02e-20)|OV - Ovarian serous cystadenocarcinoma(49;1.6e-18)|Lung(62;0.000104)|LUSC - Lung squamous cell carcinoma(58;0.000128)	GBM - Glioblastoma multiforme(46;1.66e-05)		CTTACACCAGGAAAACTTAAC	0.483													77	75					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195516445	195516445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:195516445G>A	uc011bto.1	-	2	2466	c.2006C>T	c.(2005-2007)TCT>TTT	p.S669F	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.S551F	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	674					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TGTGAAGGAAGAACCTGGGGT	0.577													52	64					0	0	1	0	0
ZNF721	170960	broad.mit.edu	37	4	437846	437846	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:437846T>A	uc003gag.2	-	3	1101	c.410A>T	c.(409-411)TAC>TTC	p.Y137F	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.Y169F|ZNF721_uc010ibe.2_Missense_Mutation_p.Y125F	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	137						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TTCACAAGTGTAGGGTTTCTC	0.388													49	118					0	0	1	0	0
PDE6B	5158	broad.mit.edu	37	4	659046	659046	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:659046C>T	uc003gap.2	+	19	2249	c.2196C>T	c.(2194-2196)GTC>GTT	p.V732V	PDE6B_uc003gao.3_Silent_p.V732V|PDE6B_uc011buy.1_Silent_p.V453V|PDE6B_uc011buz.1_Silent_p.V164V	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	732					cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						GCCTCCAGGTCGCACTTCTCG	0.632													16	30					0	0	1	0	0
KIAA1530	57654	broad.mit.edu	37	4	1369239	1369239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:1369239C>T	uc003gde.3	+	9	1823	c.1376C>T	c.(1375-1377)TCT>TTT	p.S459F	KIAA1530_uc010ibv.2_Missense_Mutation_p.S10F	NM_020894	NP_065945	Q2YD98	K1530_HUMAN	hypothetical protein LOC57654	459											0			OV - Ovarian serous cystadenocarcinoma(23;0.0138)			GACCCCACCTCTGCGGCTGCT	0.652													36	85					0	0	1	0	0
FAM193A	8603	broad.mit.edu	37	4	2661599	2661599	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:2661599C>T	uc010icl.2	+	8	1041	c.690C>T	c.(688-690)CCC>CCT	p.P230P	FAM193A_uc010ick.2_Silent_p.P430P|FAM193A_uc003gfd.2_Silent_p.P230P|FAM193A_uc011bvm.1_Silent_p.P254P|FAM193A_uc011bvn.1_Silent_p.P230P|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Silent_p.P84P	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	230										ovary(3)	3						TGGACCCCCCCGTCACTGATG	0.527													52	159					0	0	1	0	0
RGS12	6002	broad.mit.edu	37	4	3432620	3432620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:3432620C>T	uc003ggw.2	+	17	4956	c.4052C>T	c.(4051-4053)CCC>CTC	p.P1351L	RGS12_uc003ggv.2_Missense_Mutation_p.P1351L|RGS12_uc003ggy.1_3'UTR|RGS12_uc003ggz.2_Missense_Mutation_p.P703L|RGS12_uc011bvs.1_3'UTR|RGS12_uc003gha.2_Missense_Mutation_p.P693L|RGS12_uc010icv.2_Missense_Mutation_p.P550L	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	1351						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		ATCAGCAGCCCCAACAGCACC	0.657													14	54					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6050615	6050615	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:6050615T>G	uc010idb.1	-	16	2483	c.1997A>C	c.(1996-1998)CAA>CCA	p.Q666P	JAKMIP1_uc010idc.1_Missense_Mutation_p.Q481P|JAKMIP1_uc010idd.1_Intron	NM_001099433	NP_001092903	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						AGTTCCAGCTTGGATTATTGC	0.468													12	54					0	0	1	0	0
PPP2R2C	5522	broad.mit.edu	37	4	6374336	6374336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:6374336G>A	uc003gjc.2	-	5	909	c.539C>T	c.(538-540)TCC>TTC	p.S180F	PPP2R2C_uc003gjb.2_Missense_Mutation_p.S163F|PPP2R2C_uc011bwd.1_Missense_Mutation_p.S173F|PPP2R2C_uc011bwe.1_Missense_Mutation_p.S173F|PPP2R2C_uc003gja.2_Missense_Mutation_p.S180F|PPP2R2C_uc003gjd.1_Missense_Mutation_p.S268F	NM_020416	NP_065149	Q9Y2T4	2ABG_HUMAN	gamma isoform of regulatory subunit B55, protein	180	WD 3.				signal transduction	protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						ACTGTTGACGGAGATGGAGTT	0.572													56	168					0	0	1	0	0
SORCS2	57537	broad.mit.edu	37	4	7716939	7716939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:7716939C>T	uc003gkb.3	+	17	2153	c.2153C>T	c.(2152-2154)TCA>TTA	p.S718L	SORCS2_uc011bwi.1_Missense_Mutation_p.S546L	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	718	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						TCCTCCTCCTCAGAGTCCAGC	0.602													87	86					0	0	1	0	0
AFAP1	60312	broad.mit.edu	37	4	7811370	7811370	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:7811370G>A	uc003gkg.1	-	9	1298	c.1025C>T	c.(1024-1026)TCC>TTC	p.S342F	AFAP1_uc011bwk.1_Missense_Mutation_p.S342F	NM_198595	NP_940997	Q8N556	AFAP1_HUMAN	actin filament associated protein 1	342						actin cytoskeleton|cytoplasm|focal adhesion	actin binding				0						CTCAGCTGAGGAGGTCTGCTC	0.527													33	25					0	0	1	0	0
ABLIM2	84448	broad.mit.edu	37	4	8009853	8009853	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:8009853G>A	uc003gko.2	-	15	1592	c.1449C>T	c.(1447-1449)TCC>TCT	p.S483S	ABLIM2_uc003gkk.2_Silent_p.S147S|ABLIM2_uc003gkl.2_Silent_p.S211S|ABLIM2_uc003gkj.3_Silent_p.S517S|ABLIM2_uc003gkm.3_Silent_p.S431S|ABLIM2_uc003gkp.2_Silent_p.S442S|ABLIM2_uc003gkq.2_Silent_p.S483S|ABLIM2_uc003gkr.2_Silent_p.S432S|ABLIM2_uc003gks.3_Silent_p.S443S|MIR95_hsa-mir-95|MI0000097_5'Flank	NM_001130084	NP_001123556	Q6H8Q1	ABLM2_HUMAN	actin binding LIM protein family, member 2	483					axon guidance|cytoskeleton organization	actin cytoskeleton|cytoplasm|intermediate filament cytoskeleton|nucleus	actin binding|zinc ion binding			pancreas(3)	3						TGTGGGACAAGGACTGGGTGT	0.537													60	70					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20493457	20493457	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:20493457C>T	uc003gpr.1	+	9	1053	c.849C>T	c.(847-849)ATC>ATT	p.I283I	SLIT2_uc003gps.1_Silent_p.I283I	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	283	LRRNT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GCAACAATATCGTAGACTGTC	0.433													31	103					0	0	1	0	0
NSUN7	79730	broad.mit.edu	37	4	40810325	40810326	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:40810325_40810326GG>AA	uc003gvj.3	+	12	2021_2022	c.1526_1527GG>AA	c.(1525-1527)CGG>CAA	p.R509Q	NSUN7_uc003gvi.3_Missense_Mutation_p.G468K	NM_024677	NP_078953			NOL1/NOP2/Sun domain family, member 7												0						TAATTGCAGCGGGACCCTTCTG	0.416													44	53					0	0	1	0	0
NSUN7	79730	broad.mit.edu	37	4	40810394	40810395	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:40810394_40810395GG>AA	uc003gvj.3	+	12	2090_2091	c.1595_1596GG>AA	c.(1594-1596)GGG>GAA	p.G532E	NSUN7_uc003gvi.3_3'UTR	NM_024677	NP_078953			NOL1/NOP2/Sun domain family, member 7												0						CTGCTGGATGGGATTGAGTTGG	0.421													22	37					0	0	1	0	0
BEND4	389206	broad.mit.edu	37	4	42119598	42119598	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:42119598G>A	uc003gwn.2	-	6	2122	c.1542C>T	c.(1540-1542)ATC>ATT	p.I514I	BEND4_uc003gwm.2_3'UTR	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	514											0						CCTGGTGATCGATCCCTTCAT	0.527													23	14					0	0	1	0	0
ATP10D	57205	broad.mit.edu	37	4	47593286	47593286	+	Missense_Mutation	SNP	C	T	T	rs112565536		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:47593286C>T	uc003gxk.1	+	23	4333	c.4169C>T	c.(4168-4170)TCC>TTC	p.S1390F	ATP10D_uc003gxl.1_Missense_Mutation_p.S638F	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	1390	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						TCAGCAAGTTCCTGTGCTATT	0.453													62	47					0	0	1	0	0
CWH43	80157	broad.mit.edu	37	4	49046862	49046862	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:49046862C>T	uc003gyv.2	+	14	2045	c.1863C>T	c.(1861-1863)ATC>ATT	p.I621I	CWH43_uc011bzl.1_Silent_p.I594I	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	621	Required for function in lipid remodeling (By similarity).				GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						GAGGGCTGATCAGGTGAGCAC	0.353													28	103					0	0	1	0	0
CWH43	80157	broad.mit.edu	37	4	49052843	49052843	+	Silent	SNP	T	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:49052843T>C	uc003gyv.2	+	15	2180	c.1998T>C	c.(1996-1998)TCT>TCC	p.S666S	CWH43_uc011bzl.1_Silent_p.S639S	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	666					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						GAGAAGTTTCTGAGAAAATTC	0.388													25	34					0	0	1	0	0
PDCL2	132954	broad.mit.edu	37	4	56448404	56448404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:56448404C>T	uc003hbb.2	-	2	110	c.7G>A	c.(7-9)GAT>AAT	p.D3N		NM_152401	NP_689614	Q8N4E4	PDCL2_HUMAN	phosducin-like 2	3											0	Lung NSC(11;0.00256)|Glioma(25;0.08)|all_epithelial(27;0.0863)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(4;1.69e-07)|Lung(4;1.03e-06)|Epithelial(7;0.00669)			TCATTGGGATCCTACACAAAA	0.303													16	43					0	0	1	0	0
LPHN3	23284	broad.mit.edu	37	4	62599149	62599149	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:62599149C>T	uc010ihh.2	+	5	1245	c.1072C>T	c.(1072-1074)CCT>TCT	p.P358S	LPHN3_uc003hcq.3_Missense_Mutation_p.P358S|LPHN3_uc010ihg.1_Missense_Mutation_p.P426S|LPHN3_uc003hcs.1_Missense_Mutation_p.P187S	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	358	Extracellular (Potential).|Olfactomedin-like.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						TGTACCCTTTCCTAATTCATA	0.383													14	12					0	0	1	0	0
LPHN3	23284	broad.mit.edu	37	4	62758587	62758587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:62758587G>A	uc010ihh.2	+	7	1663	c.1490G>A	c.(1489-1491)AGC>AAC	p.S497N	LPHN3_uc003hcq.3_Missense_Mutation_p.S497N|LPHN3_uc003hcs.1_Missense_Mutation_p.S326N	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	497	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						CTCGAAGAGAGCTGTGAGGCT	0.512													17	14					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77661463	77661463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:77661463G>A	uc011cbx.1	+	5	3090	c.2137G>A	c.(2137-2139)GGG>AGG	p.G713R	SHROOM3_uc011cbz.1_Missense_Mutation_p.G537R|SHROOM3_uc003hkf.1_Missense_Mutation_p.G588R|SHROOM3_uc003hkg.2_Missense_Mutation_p.G491R	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	713					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			TCCTGACCTCGGGAGCCATCT	0.672													61	64					0	0	1	0	0
WDFY3	23001	broad.mit.edu	37	4	85742679	85742679	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:85742679G>A	uc003hpd.2	-	11	1557	c.1149C>T	c.(1147-1149)GCC>GCT	p.A383A	WDFY3_uc003hpf.2_Silent_p.A383A	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	383						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		GAACTGCAAAGGCCTGGACGT	0.363													34	35					0	0	1	0	0
PTPN13	5783	broad.mit.edu	37	4	87662904	87662904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:87662904C>T	uc003hpz.2	+	16	2902	c.2422C>T	c.(2422-2424)CAC>TAC	p.H808Y	PTPN13_uc003hpy.2_Missense_Mutation_p.H808Y|PTPN13_uc003hqa.2_Missense_Mutation_p.H808Y|PTPN13_uc003hqb.2_Missense_Mutation_p.H808Y	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	808	FERM.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		GTTTGAAGTTCACAATGGAGT	0.393													8	14					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	88815087	88815087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:88815087G>A	uc010iko.1	+	4	1714	c.1714G>A	c.(1714-1716)GAA>AAA	p.E572K						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		GGCAGCAGAGGAACCCAGTGA	0.502													96	87					0	0	1	0	0
PKD2	5311	broad.mit.edu	37	4	88967890	88967890	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:88967890C>T	uc003hre.2	+	6	1482	c.1416C>T	c.(1414-1416)TTC>TTT	p.F472F	PKD2_uc011cdf.1_Intron	NM_000297	NP_000288	Q13563	PKD2_HUMAN	polycystin 2	472	Helical; (Potential).					basal cortex|basal plasma membrane|endoplasmic reticulum|integral to membrane|lamellipodium|microtubule basal body	calcium ion binding|cytoskeletal protein binding|voltage-gated chloride channel activity|voltage-gated sodium channel activity			skin(1)	1		Hepatocellular(203;0.114)|Acute lymphoblastic leukemia(40;0.221)		OV - Ovarian serous cystadenocarcinoma(123;9.98e-10)|COAD - Colon adenocarcinoma(81;0.0237)		TTGATTTCTTCCTGGCAGCCT	0.388													32	109					0	0	1	0	0
PDHA2	5161	broad.mit.edu	37	4	96761854	96761854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:96761854G>A	uc003htr.3	+	1	616	c.553G>A	c.(553-555)GAT>AAT	p.D185N		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	185					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	TAAAGGAAACGATGAGATCTG	0.483													43	26					0	0	1	0	0
ADH4	127	broad.mit.edu	37	4	100052872	100052872	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:100052872A>T	uc003hun.2	-	6	702	c.626T>A	c.(625-627)GTG>GAG	p.V209E	uc003hum.1_Intron|ADH4_uc011ced.1_Missense_Mutation_p.V228E	NM_000670	NP_000661	P08319	ADH4_HUMAN	class II alcohol dehydrogenase, pi subunit	209	NAD.				alcohol catabolic process|cellular aldehyde metabolic process|ethanol oxidation|quinone cofactor metabolic process|retinol metabolic process|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	alcohol dehydrogenase activity, zinc-dependent|all-trans retinal binding|benzaldehyde dehydrogenase activity|NAD binding|NADPH:quinone reductase activity|retinol binding|retinol dehydrogenase activity|zinc ion binding			skin(2)	2				OV - Ovarian serous cystadenocarcinoma(123;4.48e-08)	NADH(DB00157)	AGAAAGACCCACACCTCCTAG	0.458													14	67					0	0	1	0	0
ADH7	131	broad.mit.edu	37	4	100349108	100349108	+	Missense_Mutation	SNP	C	T	T	rs72552718		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:100349108C>T	uc003huv.1	-	5	521	c.422G>A	c.(421-423)AGA>AAA	p.R141K		NM_000673	NP_000664	P40394	ADH7_HUMAN	class IV alcohol dehydrogenase, mu or sigma	141					ethanol oxidation|fatty acid omega-oxidation|response to bacterium|response to ethanol|xenobiotic metabolic process	cytosol|soluble fraction	alcohol dehydrogenase activity, zinc-dependent|aldehyde oxidase activity|ethanol binding|receptor antagonist activity|retinol binding|retinol dehydrogenase activity			lung(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.75e-08)	NADH(DB00157)	GCATGTAAATCTGGTGGTGCC	0.383													43	69					0	0	1	0	0
TET2	54790	broad.mit.edu	37	4	106155902	106155902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:106155902C>T	uc003hxk.2	+	3	1189	c.803C>T	c.(802-804)TCG>TTG	p.S268L	TET2_uc011cez.1_Missense_Mutation_p.S289L|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.S268L|TET2_uc003hxi.1_Missense_Mutation_p.S268L	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	268					cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		ACTCACCCATCGCATACCTCA	0.498			Mis N|F		MDS								12	38					0	0	1	0	0
COL25A1	84570	broad.mit.edu	37	4	109861728	109861728	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:109861728C>T	uc003hze.1	-	9	1170	c.639G>A	c.(637-639)GGG>GGA	p.G213G	COL25A1_uc003hzg.2_Silent_p.G213G|COL25A1_uc003hzd.2_Intron|COL25A1_uc003hzf.2_5'UTR	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	213	Extracellular (Potential).|Collagen-like 2.					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		GGCCATCTTTCCCTGTGTCCC	0.567													65	66					0	0	1	0	0
MAD2L1	4085	broad.mit.edu	37	4	120981287	120981287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:120981287G>A	uc003idl.2	-	5	728	c.604C>T	c.(604-606)CCT>TCT	p.P202S	MAD2L1_uc003idm.2_3'UTR	NM_002358	NP_002349	Q13257	MD2L1_HUMAN	MAD2-like 1	202	Required for assuming the closed conformation and for interaction with CDC20.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of apoptosis|negative regulation of mitotic anaphase-promoting complex activity|positive regulation of mitotic cell cycle spindle assembly checkpoint	condensed chromosome kinetochore|cytosol|nucleus|perinuclear region of cytoplasm	protein homodimerization activity				0						TCATTGACAGGAATTTTGTAG	0.353													27	94					0	0	1	0	0
FGF2	2247	broad.mit.edu	37	4	123813469	123813469	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:123813469G>A	uc003iev.1	+	3	853	c.785G>A	c.(784-786)CGA>CAA	p.R262Q		NM_002006	NP_001997	P09038	FGF2_HUMAN	fibroblast growth factor 2	262	Heparin-binding (By similarity).				activation of MAPK activity|branching involved in ureteric bud morphogenesis|cell migration involved in sprouting angiogenesis|chemotaxis|chondroblast differentiation|embryonic morphogenesis|fibroblast growth factor receptor signaling pathway|inositol phosphate biosynthetic process|insulin receptor signaling pathway|negative regulation of blood vessel endothelial cell migration|negative regulation of cell death|organ morphogenesis|phosphatidylinositol biosynthetic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of cardiac muscle cell proliferation|positive regulation of cell division|positive regulation of cell fate specification|positive regulation of ERK1 and ERK2 cascade|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of phospholipase C activity|Ras protein signal transduction|release of sequestered calcium ion into cytosol|wound healing	extracellular space	fibroblast growth factor receptor binding|growth factor activity|heparin binding|ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|lung(1)|central_nervous_system(1)	3					Pentosan Polysulfate(DB00686)	GCACTGAAACGAACTGGGCAG	0.398													96	91					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126371563	126371563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:126371563G>A	uc003ifj.3	+	9	9392	c.9392G>A	c.(9391-9393)GGA>GAA	p.G3131E	FAT4_uc011cgp.1_Missense_Mutation_p.G1429E|FAT4_uc003ifi.1_Missense_Mutation_p.G609E	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3131	Cadherin 30.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						ATTTCTTCAGGAAATGAAGAA	0.398													31	33					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138442398	138442398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:138442398G>A	uc003ihe.3	-	4	3580	c.3193C>T	c.(3193-3195)CCC>TCC	p.P1065S	PCDH18_uc003ihf.3_Missense_Mutation_p.P1057S|PCDH18_uc011cgz.1_Missense_Mutation_p.P276S|PCDH18_uc003ihg.3_Missense_Mutation_p.P844S|PCDH18_uc011cha.1_Missense_Mutation_p.P245S	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	1065	Interaction with DAB1 (By similarity).|Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TTGGTGGTGGGATTTTGAAAA	0.562													15	43					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138451935	138451935	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:138451935G>A	uc003ihe.3	-	1	1695	c.1308C>T	c.(1306-1308)ATC>ATT	p.I436I	PCDH18_uc003ihf.3_Silent_p.I429I|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.I216I|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	436	Cadherin 4.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TGTCCTCAGCGATTACAGTCA	0.383													39	97					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138452990	138452990	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:138452990C>T	uc003ihe.3	-	1	640	c.253G>A	c.(253-255)GAA>AAA	p.E85K	PCDH18_uc003ihf.3_Missense_Mutation_p.E78K|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Intron|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	85	Extracellular (Potential).|Cadherin 1.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					ATGCTGATTTCCCCATTATCC	0.433													54	162					0	0	1	0	0
OTUD4	54726	broad.mit.edu	37	4	146059041	146059041	+	Silent	SNP	A	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:146059041A>G	uc003ika.3	-	21	2829	c.2691T>C	c.(2689-2691)CAT>CAC	p.H897H	OTUD4_uc003ijz.3_Silent_p.H896H	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	961							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					GAGTGGGAGGATGAGCCTTTC	0.478													4	160					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155506751	155506751	+	Silent	SNP	T	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:155506751T>C	uc003iod.1	-	5	1888	c.1830A>G	c.(1828-1830)GAA>GAG	p.E610E	FGA_uc003ioe.1_Silent_p.E610E|FGA_uc003iof.1_3'UTR	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	610	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	CATGATCGGCTTCACTTCCGG	0.353													37	46					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155506870	155506871	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:155506870_155506871GG>AA	uc003iod.1	-	5	1768_1769	c.1710_1711CC>TT	c.(1708-1713)TTCCCT>TTTTCT	p.P571S	FGA_uc003ioe.1_Missense_Mutation_p.P571S|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	571	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	CCACGGGAAGGGAATTCAGCTA	0.431													35	39					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155507777	155507777	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:155507777C>T	uc003iod.1	-	5	862	c.804G>A	c.(802-804)GAG>GAA	p.E268E	FGA_uc003ioe.1_Silent_p.E268E|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	268	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	CTCGAGTAATCTCATTTCCAC	0.522													63	55					0	0	1	0	0
NPY2R	4887	broad.mit.edu	37	4	156135678	156135678	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:156135678C>T	uc003ioq.2	+	2	1082	c.587C>T	c.(586-588)CCG>CTG	p.P196L	NPY2R_uc003ior.2_Missense_Mutation_p.P196L	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	196	Extracellular (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				GAGATCATCCCGGACTTTGAG	0.507													76	70					0	0	1	0	0
NPY5R	4889	broad.mit.edu	37	4	164271851	164271851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:164271851G>A	uc003iqn.2	+	4	608	c.426G>A	c.(424-426)ATG>ATA	p.M142I		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	142	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				GGTATCATATGATAAAACATC	0.363													44	170					0	0	1	0	0
GALNTL6	442117	broad.mit.edu	37	4	173873271	173873271	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:173873271C>T	uc003isv.2	+	10	1969	c.1233C>T	c.(1231-1233)TCC>TCT	p.S411S		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	411	Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						GGCATCTCTCCACGGGGGACA	0.557													21	60					0	0	1	0	0
ADAM29	11086	broad.mit.edu	37	4	175898638	175898638	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:175898638G>A	uc003iuc.2	+	5	2632	c.1962G>A	c.(1960-1962)CTG>CTA	p.L654L	ADAM29_uc003iud.2_Silent_p.L654L|ADAM29_uc010irr.2_Silent_p.L654L|ADAM29_uc011cki.1_Silent_p.L654L	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	654	EGF-like.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		CCAACTGCCTGATAAAAGGCT	0.413													31	34					0	0	1	0	0
NEIL3	55247	broad.mit.edu	37	4	178281742	178281742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:178281742C>T	uc003iut.2	+	9	1663	c.1546C>T	c.(1546-1548)CTC>TTC	p.L516F		NM_018248	NP_060718	Q8TAT5	NEIL3_HUMAN	nei endonuclease VIII-like 3	516					base-excision repair|nucleotide-excision repair	nucleus	bubble DNA binding|damaged DNA binding|DNA N-glycosylase activity|DNA-(apurinic or apyrimidinic site) lyase activity|double-stranded DNA binding|single-stranded DNA binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4		Breast(14;6.27e-05)|Melanoma(52;0.00102)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.164)		all cancers(43;1.96e-23)|Epithelial(43;2.52e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.89e-11)|GBM - Glioblastoma multiforme(59;9.49e-05)|Colorectal(24;0.00013)|COAD - Colon adenocarcinoma(29;0.000696)|STAD - Stomach adenocarcinoma(60;0.00308)|LUSC - Lung squamous cell carcinoma(193;0.0398)|READ - Rectum adenocarcinoma(43;0.191)		CCTCTGCATTCTCCGAGTTGT	0.458								BER_DNA_glycosylases					31	86					0	0	1	0	0
MIR1305	100302270	broad.mit.edu	37	4	183090455	183090455	+	RNA	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:183090455C>T	hsa-mir-1305|MI0006372	+			c.10C>T			ODZ3_uc010irv.1_Intron																	0						GAAGATCCTGCTGTTTCTACC	0.373													3	4					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183635317	183635317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:183635317G>A	uc003ivd.1	+	12	2336	c.2299G>A	c.(2299-2301)GGA>AGA	p.G767R	ODZ3_uc003ive.1_Missense_Mutation_p.G173R	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	767	EGF-like 8.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GTGCCAGCCTGGATGGAGAGG	0.502													36	27					0	0	1	0	0
DCTD	1635	broad.mit.edu	37	4	183815719	183815719	+	Missense_Mutation	SNP	G	A	A	rs17849458		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:183815719G>A	uc003ivf.2	-	4	458	c.284C>T	c.(283-285)TCG>TTG	p.S95L	DCTD_uc003ivg.2_Missense_Mutation_p.S106L|DCTD_uc010irw.2_Missense_Mutation_p.S36L|DCTD_uc003ivh.2_Missense_Mutation_p.S36L	NM_001921	NP_001912	P32321	DCTD_HUMAN	dCMP deaminase isoform b	95				S -> L (in Ref. 6; AAH01286).	nucleotide biosynthetic process|pyrimidine base metabolic process|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide metabolic process	cytosol	dCMP deaminase activity|zinc ion binding				0		all_lung(41;5.16e-14)|Lung NSC(41;1.33e-13)|Colorectal(36;0.00666)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0592)|all_neural(102;0.202)		all cancers(43;1.65e-24)|Epithelial(43;3.44e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.39e-10)|Colorectal(24;4.69e-07)|COAD - Colon adenocarcinoma(29;7.07e-05)|STAD - Stomach adenocarcinoma(60;0.000118)|GBM - Glioblastoma multiforme(59;0.000472)|LUSC - Lung squamous cell carcinoma(40;0.00984)|READ - Rectum adenocarcinoma(43;0.0419)		CACATCGGTCGAATTTTTGTT	0.438													20	67					0	0	1	0	0
FAM149A	25854	broad.mit.edu	37	4	187078777	187078777	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:187078777C>T	uc003iyt.3	+	8	1212	c.633C>T	c.(631-633)CTC>CTT	p.L211L	FAM149A_uc011cla.1_Silent_p.L211L|FAM149A_uc010isj.2_Silent_p.L211L|FAM149A_uc010isk.2_RNA|FAM149A_uc003iyu.3_Silent_p.L211L|FAM149A_uc010isl.2_Silent_p.L211L|FAM149A_uc011clb.1_Silent_p.L211L	NM_015398	NP_056213	A5PLN7	F149A_HUMAN	hypothetical protein LOC25854	502										breast(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.19e-10)|BRCA - Breast invasive adenocarcinoma(30;1.22e-05)|GBM - Glioblastoma multiforme(59;0.000122)|STAD - Stomach adenocarcinoma(60;0.000288)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.166)		CGCACGTCCTCGTTCCACACG	0.542													37	46					0	0	1	0	0
TRIML2	205860	broad.mit.edu	37	4	189012615	189012615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:189012615G>A	uc003izl.2	-	7	1112	c.1076C>T	c.(1075-1077)TCC>TTC	p.S359F	TRIML2_uc003izj.1_Missense_Mutation_p.S187F|TRIML2_uc003izk.1_Missense_Mutation_p.S167F|TRIML2_uc011cle.1_Missense_Mutation_p.S434F	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	359	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		GATACAGAGGGAAAACACAGG	0.473													32	105					0	0	1	0	0
TRIML1	339976	broad.mit.edu	37	4	189068456	189068456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:189068456C>T	uc003izm.1	+	6	1452	c.1337C>T	c.(1336-1338)TCC>TTC	p.S446F	TRIML1_uc003izn.1_Missense_Mutation_p.S170F	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	446	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		CCTATCTTTTCCCCCTGCCTC	0.562													32	96					0	0	1	0	0
FRG2	448831	broad.mit.edu	37	4	190947577	190947577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr4:190947577C>T	uc003izv.2	-	3	346	c.293G>A	c.(292-294)AGA>AAA	p.R98K	FRG2_uc011clh.1_Missense_Mutation_p.R99K	NM_001005217	NP_001005217	Q64ET8	FRG2_HUMAN	FSHD region gene 2	98						nucleus				ovary(1)	1		all_cancers(14;1.01e-50)|all_epithelial(14;6.7e-35)|all_lung(41;2.17e-14)|Lung NSC(41;4.95e-14)|Breast(6;3.4e-05)|Melanoma(20;0.000539)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|all_hematologic(60;0.0489)|Prostate(90;0.0513)		all cancers(3;3.83e-31)|Epithelial(3;1.36e-30)|OV - Ovarian serous cystadenocarcinoma(60;1.99e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00831)|READ - Rectum adenocarcinoma(43;0.155)		ACTCATTTTTCTTTTCCTGCA	0.443													14	41					0	0	1	0	0
SLC6A19	340024	broad.mit.edu	37	5	1208886	1208887	+	Silent	DNP	CC	TT	TT			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:1208886_1208887CC>TT	uc003jbw.3	+	2	284_285	c.228_229CC>TT	c.(226-231)ATCCTG>ATTTTG	p.76_77IL>IL		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	76_77	Helical; Name=2; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CGTTCCTCATCCTGCTGGTCCT	0.673													67	26					0	0	1	0	0
SLC6A19	340024	broad.mit.edu	37	5	1216763	1216763	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:1216763G>A	uc003jbw.3	+	7	1034	c.978G>A	c.(976-978)GGG>GGA	p.G326G		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	326	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CCGTCATTGGGTTCCGCGCCA	0.597													40	61					0	0	1	0	0
TERT	7015	broad.mit.edu	37	5	1255420	1255420	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:1255420G>A	uc003jcb.1	-	14	3197	c.3139C>T	c.(3139-3141)CTG>TTG	p.L1047L	TERT_uc003jbz.1_Silent_p.L243L|TERT_uc003jca.1_Silent_p.L1035L|TERT_uc003jcc.1_Silent_p.L984L|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	1047	CTE.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TTGGCTTTCAGGATGGAGTAG	0.557									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				11	19					0	0	1	0	0
SLC6A3	6531	broad.mit.edu	37	5	1409168	1409168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:1409168C>T	uc003jck.2	-	11	1592	c.1471G>A	c.(1471-1473)GAA>AAA	p.E491K		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	491	Helical; Name=10; (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	CCGATGGCTTCGATGAGCACT	0.592													22	8					0	0	1	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5306727	5306727	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:5306727G>A	uc003jdl.2	+	21	3435	c.3297G>A	c.(3295-3297)CCG>CCA	p.P1099P		NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1099	TSP type-1 5.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						CACATTTGCCGAAGCCCAGCC	0.547													44	10					0	0	1	0	0
SEMA5A	9037	broad.mit.edu	37	5	9052122	9052122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:9052122G>A	uc003jek.2	-	20	3420	c.2708C>T	c.(2707-2709)TCG>TTG	p.S903L		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	903	Extracellular (Potential).|TSP type-1 7.				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						AGACCAGTCCGACCACTCCGA	0.592													16	18					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13716600	13716600	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:13716600A>G	uc003jfd.2	-	74	12947	c.12905T>C	c.(12904-12906)ATC>ACC	p.I4302T	DNAH5_uc003jfc.2_Missense_Mutation_p.I470T	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4302					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ACAAACCTGGATATACTGAAG	0.333									Kartagener_syndrome				12	37					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13770902	13770902	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:13770902G>A	uc003jfd.2	-	56	9603	c.9561C>T	c.(9559-9561)TTC>TTT	p.F3187F	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3187	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTCCATATATGAACTTATAGC	0.403									Kartagener_syndrome				16	29					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13811895	13811895	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:13811895A>T	uc003jfd.2	-	44	7310	c.7268T>A	c.(7267-7269)ATT>AAT	p.I2423N		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2423	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTGACGAAGAATTTCTGCTTC	0.423									Kartagener_syndrome				29	57					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13920635	13920635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:13920635C>T	uc003jfd.2	-	6	794	c.752G>A	c.(751-753)GGA>GAA	p.G251E	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	251	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTCTATTTTTCCCAAAGTCTC	0.393									Kartagener_syndrome				73	123					0	0	1	0	0
BASP1	10409	broad.mit.edu	37	5	17275866	17275866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:17275866C>T	uc003jfx.2	+	2	720	c.541C>T	c.(541-543)CCC>TCC	p.P181S		NM_006317	NP_006308	P80723	BASP1_HUMAN	brain abundant, membrane attached signal protein	181					glomerular visceral epithelial cell differentiation|negative regulation of transcription, DNA-dependent	cytoplasm|cytoskeleton|growth cone|nuclear speck|plasma membrane	protein domain specific binding|transcription corepressor activity|transcription regulatory region DNA binding				0						GGAGGCTGCCCCCTCTTCCAA	0.672													14	21					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23509677	23509677	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:23509677G>A	uc003jgo.2	+	3	350	c.168G>A	c.(166-168)AGG>AGA	p.R56R		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	56	KRAB-related.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						ATGTGAAAAGGAACTATAATG	0.423										HNSCC(3;0.000094)			30	107					0	0	1	0	0
CDH10	1008	broad.mit.edu	37	5	24498562	24498562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:24498562G>A	uc003jgr.1	-	9	1792	c.1460C>T	c.(1459-1461)CCA>CTA	p.P487L	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	487	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		AGCAAACTGTGGGGCATTGTC	0.403										HNSCC(23;0.051)			30	66					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	31799634	31799634	+	Silent	SNP	C	T	T	rs146790239		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:31799634C>T	uc003jhl.2	+	2	667	c.279C>T	c.(277-279)TTC>TTT	p.F93F	PDZD2_uc003jhm.2_Silent_p.F93F	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	93	PDZ 1.				cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						TCCCTGTTTTCGGGGACTATG	0.567													40	257					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	31799781	31799781	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:31799781C>T	uc003jhl.2	+	2	814	c.426C>T	c.(424-426)ATC>ATT	p.I142I	PDZD2_uc003jhm.2_Silent_p.I142I	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	142	PDZ 1.				cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GGGATGAGATCCTCTCACTGA	0.602													20	192					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	33162576	33162576	+	RNA	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:33162576G>A	uc003jhx.2	+	1		c.311G>A								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		AGACCCTGGTGAAGAATTGCA	0.512													8	103					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35779280	35779280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:35779280G>A	uc003jjo.2	+	30	4390	c.4279G>A	c.(4279-4281)GAA>AAA	p.E1427K	SPEF2_uc003jjp.1_Missense_Mutation_p.E913K|SPEF2_uc003jjr.2_5'UTR	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1427					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AATTCAGAATGAACTTTATTT	0.373													26	55					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35792540	35792540	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:35792540C>T	uc003jjo.2	+	31	4657	c.4546C>T	c.(4546-4548)CAA>TAA	p.Q1516*	SPEF2_uc003jjp.1_Nonsense_Mutation_p.Q1002*|SPEF2_uc003jjr.2_Nonsense_Mutation_p.Q571*	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1516					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GCACCTTACCCAACCTGAAGT	0.323													26	121					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35800200	35800200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:35800200G>A	uc003jjo.2	+	34	5072	c.4961G>A	c.(4960-4962)GGA>GAA	p.G1654E	SPEF2_uc003jjp.1_Missense_Mutation_p.G1140E|SPEF2_uc003jjr.2_Missense_Mutation_p.G709E	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1654					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GTGGCTGTTGGAACTCATGTC	0.483													33	143					0	0	1	0	0
UGT3A1	133688	broad.mit.edu	37	5	35968179	35968179	+	Missense_Mutation	SNP	G	A	A	rs142049781	by1000genomes	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:35968179G>A	uc003jjv.1	-	3	410	c.253C>T	c.(253-255)CAT>TAT	p.H85Y	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.H85Y|UGT3A1_uc011cor.1_Missense_Mutation_p.H51Y|UGT3A1_uc003jjy.1_Missense_Mutation_p.H31Y	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	85	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CTTTTTTGATGATCTTCAGGT	0.308													11	44					0	0	1	0	0
UGT3A2	167127	broad.mit.edu	37	5	36039653	36039653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:36039653G>A	uc003jjz.1	-	5	1094	c.1001C>T	c.(1000-1002)TCT>TTT	p.S334F	UGT3A2_uc011cos.1_Missense_Mutation_p.S300F|UGT3A2_uc011cot.1_Missense_Mutation_p.S32F	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	334	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GGGCCAATGAGAACACTGACA	0.522													31	192					0	0	1	0	0
RANBP3L	202151	broad.mit.edu	37	5	36257607	36257607	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:36257607C>G	uc003jkh.2	-	9	1214	c.721G>C	c.(721-723)GAA>CAA	p.E241Q	RANBP3L_uc011cow.1_Missense_Mutation_p.E266Q	NM_145000	NP_659437	Q86VV4	RNB3L_HUMAN	RAN binding protein 3-like isoform 2	241					intracellular transport					ovary(1)	1	all_lung(31;4.52e-05)		Epithelial(62;0.0543)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.149)|Colorectal(62;0.202)			AATGGTTTTTCCTTGGCATAT	0.308													45	91					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38406282	38406282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:38406282G>A	uc003jlc.1	+	7	1091	c.767G>A	c.(766-768)GGA>GAA	p.G256E	EGFLAM_uc003jlb.1_Missense_Mutation_p.G256E|EGFLAM_uc003jle.1_Missense_Mutation_p.G22E|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	256						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					ACCGACATGGGAGCTGGTGAG	0.483													12	81					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38463945	38463945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:38463945G>A	uc003jlc.1	+	23	3235	c.2911G>A	c.(2911-2913)GAA>AAA	p.E971K	EGFLAM_uc003jlb.1_Missense_Mutation_p.E963K|EGFLAM_uc003jle.1_Missense_Mutation_p.E729K|EGFLAM_uc003jlf.1_Missense_Mutation_p.E329K|EGFLAM_uc003jlg.1_Missense_Mutation_p.E106K|EGFLAM_uc003jlh.1_Missense_Mutation_p.E53K	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	971	Laminin G-like 3.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					TGGAATGAAGGAAATTGCTCT	0.537													48	84					0	0	1	0	0
LIFR	3977	broad.mit.edu	37	5	38482762	38482762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:38482762C>T	uc010ive.1	-	19	2931	c.2599G>A	c.(2599-2601)GAA>AAA	p.E867K	LIFR_uc003jli.2_Missense_Mutation_p.E867K	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	867	Cytoplasmic (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					TAGAAGGTTTCTTTAATCCtt	0.194			T	PLAG1	salivary adenoma								9	110					0	0	1	0	0
LIFR	3977	broad.mit.edu	37	5	38523535	38523535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:38523535C>T	uc010ive.1	-	5	879	c.547G>A	c.(547-549)GAG>AAG	p.E183K	LIFR_uc003jli.2_Missense_Mutation_p.E183K	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	183	Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					TTTACGAGCTCCATACTCTCT	0.343			T	PLAG1	salivary adenoma								53	108					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38884059	38884059	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:38884059G>A	uc003jln.1	+	5	916	c.549G>A	c.(547-549)GGG>GGA	p.G183G	OSMR_uc003jlm.1_Silent_p.G183G	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	183	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					ATTTGGAAGGGAAACAGATTC	0.368													60	107					0	0	1	0	0
FYB	2533	broad.mit.edu	37	5	39202110	39202110	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:39202110G>A	uc003jls.2	-	1	1020	c.953C>T	c.(952-954)TCT>TTT	p.S318F	FYB_uc003jlt.2_Missense_Mutation_p.S318F|FYB_uc003jlu.2_Missense_Mutation_p.S318F|FYB_uc011cpl.1_Missense_Mutation_p.S328F	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	318					cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			TGTCAGCTTAGAAGGGGCCTT	0.517													18	78					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	40998729	40998729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:40998729C>T	uc003jmj.3	-	41	5126	c.4636G>A	c.(4636-4638)GAA>AAA	p.E1546K	HEATR7B2_uc003jmi.3_Missense_Mutation_p.E1101K	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1546							binding			ovary(6)|central_nervous_system(2)	8						GTCAGTTGTTCTCTGTCTAGT	0.393													6	3					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41012789	41012789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:41012789C>T	uc003jmj.3	-	30	3521	c.3031G>A	c.(3031-3033)GAA>AAA	p.E1011K	HEATR7B2_uc003jmi.3_Missense_Mutation_p.E566K	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1011							binding			ovary(6)|central_nervous_system(2)	8						TCCAGCATTTCCTCTAGGAAC	0.458													46	44					0	0	1	0	0
PLCXD3	345557	broad.mit.edu	37	5	41313844	41313846	+	Missense_Mutation	TNP	GGA	AAT	AAT			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:41313844_41313846GGA>AAT	uc003jmm.1	-	3	941_943	c.839_841TCC>ATT	c.(838-843)GTCCGC>GATTGC	p.280_281VR>DC		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	280_281					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						TTCTGCGTGCGGACCCACTGCAT	0.429													7	26					0	0	1	0	0
HCN1	348980	broad.mit.edu	37	5	45353240	45353240	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:45353240C>T	uc003jok.2	-	5	1364	c.1339G>A	c.(1339-1341)GAA>AAA	p.E447K		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	447	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						AGAATATTTTCCTCATCAAAG	0.343													22	46					0	0	1	0	0
ITGA2	3673	broad.mit.edu	37	5	52361759	52361759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:52361759C>T	uc003joy.2	+	15	2038	c.1895C>T	c.(1894-1896)TCC>TTC	p.S632F	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Missense_Mutation_p.S556F|ITGA2_uc011cqd.1_RNA|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	632	FG-GAP 7.|Potential.|Extracellular (Potential).				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				AATGGGGATTCCATCACCGAT	0.448													13	24					0	0	1	0	0
GZMK	3003	broad.mit.edu	37	5	54329643	54329643	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:54329643C>T	uc003jpl.1	+	5	728	c.684C>T	c.(682-684)GTC>GTT	p.V228V		NM_002104	NP_002095	P49863	GRAK_HUMAN	granzyme K precursor	228	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				ACGCTATAGTCTCTGGAGGTC	0.483													22	43					0	0	1	0	0
IL31RA	133396	broad.mit.edu	37	5	55212634	55212634	+	Missense_Mutation	SNP	G	A	A	rs34056887		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:55212634G>A	uc003jql.2	+	15	2046	c.1981G>A	c.(1981-1983)GAA>AAA	p.E661K	IL31RA_uc003jqm.2_Missense_Mutation_p.E629K|IL31RA_uc003jqn.2_Missense_Mutation_p.E661K|IL31RA_uc003jqo.2_Missense_Mutation_p.E519K	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	629	Cytoplasmic (Potential).				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				AACGGGTCAGGAAAACAATTT	0.478													31	47					0	0	1	0	0
IL31RA	133396	broad.mit.edu	37	5	55212767	55212767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:55212767C>T	uc003jql.2	+	15	2179	c.2114C>T	c.(2113-2115)TCG>TTG	p.S705L	IL31RA_uc003jqm.2_Intron|IL31RA_uc003jqn.2_Intron|IL31RA_uc003jqo.2_Missense_Mutation_p.S563L	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	673	Cytoplasmic (Potential).				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				TACCTACGTTCGAGGATGCCA	0.527													20	73					0	0	1	0	0
ERBB2IP	55914	broad.mit.edu	37	5	65350440	65350440	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:65350440G>A	uc003juk.1	+	21	3602	c.3294G>A	c.(3292-3294)CAG>CAA	p.Q1098Q	ERBB2IP_uc003jui.1_Silent_p.Q1098Q|ERBB2IP_uc003juj.1_Silent_p.Q1098Q|ERBB2IP_uc011cqx.1_Silent_p.Q1098Q|ERBB2IP_uc011cqy.1_Silent_p.Q1098Q|ERBB2IP_uc011cqz.1_Intron|ERBB2IP_uc010iwx.1_Silent_p.Q1094Q|ERBB2IP_uc003jul.1_Silent_p.Q1094Q	NM_018695	NP_061165	Q96RT1	LAP2_HUMAN	ERBB2 interacting protein isoform 2	1098					basal protein localization|cell adhesion|cell cycle|cell growth|epidermal growth factor receptor signaling pathway|establishment or maintenance of epithelial cell apical/basal polarity|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization	basement membrane|cytoplasm|hemidesmosome|nucleus	ErbB-2 class receptor binding|integrin binding|structural constituent of cytoskeleton			ovary(3)|lung(2)|central_nervous_system(2)	7		Lung NSC(167;9.45e-06)|Prostate(74;0.0139)|Ovarian(174;0.0547)|Breast(144;0.093)|Colorectal(97;0.234)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0767)|Lung(70;0.00191)		GGCGGGCTCAGATTCCTGAAG	0.478													19	58					0	0	1	0	0
IQGAP2	10788	broad.mit.edu	37	5	75969815	75969815	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:75969815C>T	uc003kek.2	+	26	3470	c.3248C>T	c.(3247-3249)TCG>TTG	p.S1083L	IQGAP2_uc011csv.1_Missense_Mutation_p.S579L|IQGAP2_uc003kel.2_Missense_Mutation_p.S579L|IQGAP2_uc010izw.1_5'Flank	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	1083	Ras-GAP.				small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		CTGAAGAATTCGATCCATGAG	0.368													63	45					0	0	1	0	0
SERINC5	256987	broad.mit.edu	37	5	79498805	79498805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:79498805G>A	uc003kgj.2	-	2	224	c.95C>T	c.(94-96)TCC>TTC	p.S32F	SERINC5_uc003kgk.2_Missense_Mutation_p.S32F|SERINC5_uc003kgl.2_RNA|SERINC5_uc003kgm.2_Missense_Mutation_p.S32F|SERINC5_uc011ctj.1_Missense_Mutation_p.S32F	NM_178276	NP_840060	Q86VE9	SERC5_HUMAN	developmentally regulated protein TPO1	32	Extracellular (Potential).				phosphatidylserine metabolic process|phospholipid biosynthetic process|positive regulation of transferase activity	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		Lung NSC(167;0.00328)|all_lung(232;0.00356)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;2.93e-46)|Epithelial(54;5.59e-40)|all cancers(79;1.89e-34)		GGTGCTGAGGGACTGCCGAAT	0.552													7	27					0	0	1	0	0
SPZ1	84654	broad.mit.edu	37	5	79616713	79616713	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:79616713C>T	uc003kgn.2	+	1	924	c.679C>T	c.(679-681)CAG>TAG	p.Q227*	uc011ctk.1_RNA	NM_032567	NP_115956	Q9BXG8	SPZ1_HUMAN	spermatogenic leucine zipper 1	227	Potential.|Basic motif (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(1)	1		Lung NSC(167;0.0393)|all_lung(232;0.0428)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;3.43e-47)|Epithelial(54;2.25e-41)|all cancers(79;4.19e-36)		TCAACAAAGTCAGGAAAAAGC	0.353													7	35					0	0	1	0	0
EDIL3	10085	broad.mit.edu	37	5	83549909	83549909	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:83549909C>T	uc003kio.1	-	2	608	c.189G>A	c.(187-189)GTG>GTA	p.V63V	EDIL3_uc003kip.1_Silent_p.V63V	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	63					cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		TACCAACCTCCACAACACTAG	0.403													20	26					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90000254	90000254	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:90000254C>T	uc003kju.2	+	36	8431	c.8335C>T	c.(8335-8337)CCT>TCT	p.P2779S	GPR98_uc003kjt.2_Missense_Mutation_p.P485S|GPR98_uc003kjv.2_Missense_Mutation_p.P379S	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2779	Calx-beta 19.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGACAACATTCCTGAGGAGAA	0.328													3	7					0	0	1	0	0
PCSK1	5122	broad.mit.edu	37	5	95735798	95735798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:95735798C>T	uc003kls.1	-	10	1495	c.1289G>A	c.(1288-1290)GGA>GAA	p.G430E	PCSK1_uc010jbi.1_Missense_Mutation_p.G120E	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	430					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CAAGCCTGCTCCATTCTTTTT	0.532													58	67					0	0	1	0	0
AQPEP	206338	broad.mit.edu	37	5	115351418	115351418	+	Silent	SNP	C	T	T	rs143698388		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:115351418C>T	uc003kro.2	+	18	2876	c.2712C>T	c.(2710-2712)GTC>GTT	p.V904V	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	904	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						GCCGGTATGTCGCAAAAGACT	0.413													30	23					0	0	1	0	0
FTMT	94033	broad.mit.edu	37	5	121187768	121187768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:121187768C>T	uc003kss.2	+	1	119	c.110C>T	c.(109-111)CCC>CTC	p.P37L		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	37					cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		CCGGGGCGCCCCTTGGACCCC	0.776													7	3					0	0	1	0	0
SNCAIP	9627	broad.mit.edu	37	5	121786775	121786775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:121786775G>A	uc003ksw.1	+	10	2439	c.2233G>A	c.(2233-2235)GGC>AGC	p.G745S	SNCAIP_uc011cwl.1_Missense_Mutation_p.G303S|SNCAIP_uc003ksx.1_Missense_Mutation_p.G792S|SNCAIP_uc003ksy.1_Missense_Mutation_p.G379S|SNCAIP_uc003ksz.1_Missense_Mutation_p.G379S|SNCAIP_uc010jcu.2_Missense_Mutation_p.G341S|SNCAIP_uc011cwm.1_Missense_Mutation_p.G379S|SNCAIP_uc003kta.1_Missense_Mutation_p.G377S|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.G439S|SNCAIP_uc010jcx.1_Missense_Mutation_p.G685S|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_Missense_Mutation_p.G261S	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	745					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		ATCCCTGGATGGCCACAGCCC	0.557													14	49					0	0	1	0	0
MEGF10	84466	broad.mit.edu	37	5	126781204	126781204	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:126781204C>T	uc003kuh.3	+	21	2909	c.2547C>T	c.(2545-2547)CTC>CTT	p.L849L	MEGF10_uc003kui.3_Silent_p.L849L	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	849	Extracellular (Potential).|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		GTACTGCTCTCCCTGCTGATT	0.438													24	66					0	0	1	0	0
TIFAB	497189	broad.mit.edu	37	5	134785287	134785287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:134785287G>A	uc003law.3	-	2	544	c.343C>T	c.(343-345)CGC>TGC	p.R115C	C5orf20_uc003lav.2_5'Flank	NM_001099221	NP_001092691	Q6ZNK6	TIFAB_HUMAN	TIFA-related protein TIFAB	115											0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCTTCTACGCGAACCAGCATC	0.562													37	113					0	0	1	0	0
BRD8	10902	broad.mit.edu	37	5	137499029	137499029	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:137499029G>C	uc003lcf.1	-	15	1932	c.1877C>G	c.(1876-1878)GCC>GGC	p.A626G	BRD8_uc003lcc.1_RNA|BRD8_uc011cyl.1_Missense_Mutation_p.A405G|BRD8_uc003lcg.2_Missense_Mutation_p.A699G|BRD8_uc003lci.2_Missense_Mutation_p.A629G|BRD8_uc003lch.2_Missense_Mutation_p.A520G|BRD8_uc011cym.1_Missense_Mutation_p.A610G|BRD8_uc010jer.1_Missense_Mutation_p.A595G|BRD8_uc011cyn.1_Missense_Mutation_p.A585G	NM_139199	NP_631938	Q9H0E9	BRD8_HUMAN	bromodomain containing 8 isoform 2	626					cell surface receptor linked signaling pathway|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription from RNA polymerase II promoter	mitochondrion|NuA4 histone acetyltransferase complex	sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			CTCACCTGGGGCATCCTTAGA	0.448													17	50					0	0	1	0	0
GFRA3	2676	broad.mit.edu	37	5	137600087	137600087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:137600087G>A	uc003lcn.2	-	2	382	c.242C>T	c.(241-243)TCG>TTG	p.S81L	GFRA3_uc003lco.2_Missense_Mutation_p.S81L	NM_001496	NP_001487	O60609	GFRA3_HUMAN	GDNF family receptor alpha 3 preproprotein	81					peripheral nervous system development	anchored to membrane|cytoplasm|extrinsic to membrane|intracellular membrane-bounded organelle	receptor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			AGCAGGGACCGAAGGCTCCTC	0.602													15	46					0	0	1	0	0
PCDHA6	56142	broad.mit.edu	37	5	140209499	140209499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:140209499C>T	uc003lho.2	+	1	1850	c.1823C>T	c.(1822-1824)TCG>TTG	p.S608L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc011dab.1_Missense_Mutation_p.S608L	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	608	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGTGGCTTTCGTATGAGCTG	0.662													53	53					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140221050	140221050	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:140221050C>T	uc003lhs.2	+	1	144	c.144C>T	c.(142-144)ATC>ATT	p.I48I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.I48I	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	48	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGGCCGGATCGCGCAGGACC	0.657													27	84					0	0	1	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307514	140307514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:140307514C>T	uc003lih.2	+	1	1213	c.1037C>T	c.(1036-1038)TCG>TTG	p.S346L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.S346L	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	346	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGACTCTTTCGAACCCAGTA	0.517													99	80					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140432228	140432228	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:140432228C>T	uc003lik.1	+	1	1250	c.1173C>T	c.(1171-1173)CCC>CCT	p.P391P		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	391	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAGACCTTCCCTTTGTAATCA	0.473													30	67					0	0	1	0	0
PCDHB4	56131	broad.mit.edu	37	5	140503762	140503762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:140503762G>A	uc003lip.1	+	1	2182	c.2182G>A	c.(2182-2184)GAG>AAG	p.E728K		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	728	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTCGGTGCCCGAGGGCCCCTT	0.667													68	151					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553578	140553578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:140553578G>A	uc003lit.2	+	1	1336	c.1162G>A	c.(1162-1164)GAT>AAT	p.D388N		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	388	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CATCCAGGACGATGTCCCCTT	0.468													10	44					0	0	1	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573631	140573631	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:140573631C>T	uc003lix.2	+	1	1680	c.1506C>T	c.(1504-1506)TCC>TCT	p.S502S		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	502	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCTCGCCTCCCTGGTCTCCA	0.677													62	168					0	0	1	0	0
PCDHB12	56124	broad.mit.edu	37	5	140588661	140588661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:140588661C>T	uc003liz.2	+	1	371	c.182C>T	c.(181-183)TCG>TTG	p.S61L	PCDHB12_uc011dak.1_Intron	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	61	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGCTGTCTTCGCGGGGGGCT	0.507													26	103					0	0	1	0	0
PCDHB14	56122	broad.mit.edu	37	5	140604280	140604280	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:140604280C>T	uc003ljb.2	+	1	1203	c.1203C>T	c.(1201-1203)TTC>TTT	p.F401F	PCDHB14_uc011dal.1_Silent_p.F248F	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	401	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGAACTTTTTCACTCTAGTTT	0.458													53	118					0	0	1	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711683	140711683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:140711683G>A	uc003lji.1	+	1	1432	c.1432G>A	c.(1432-1434)GAC>AAC	p.D478N	PCDHGA1_uc011dan.1_Missense_Mutation_p.D478N	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	478	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGGGCCCACGACTTGGACAG	0.517													79	92					0	0	1	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140767861	140767861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:140767861C>T	uc003lkc.1	+	1	410	c.410C>T	c.(409-411)TCC>TTC	p.S137F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.S137F	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	137	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGCAAAATTCCTTTGAGCTG	0.433													38	23					0	0	1	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140773326	140773326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:140773326G>A	uc003lkd.1	+	1	1844	c.946G>A	c.(946-948)GAA>AAA	p.E316K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.E316K	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	316	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCATTTTATGAAATGGAAAT	0.358													55	181					0	0	1	0	0
NR3C1	2908	broad.mit.edu	37	5	142680139	142680139	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:142680139G>A	uc003lmz.2	-	5	2150	c.1658C>T	c.(1657-1659)CCA>CTA	p.P553L	NR3C1_uc003lmy.2_Missense_Mutation_p.P554L|NR3C1_uc003lna.2_Missense_Mutation_p.P553L|NR3C1_uc003lnb.2_Missense_Mutation_p.P553L|NR3C1_uc011dbk.1_Missense_Mutation_p.P156L|NR3C1_uc003lnc.2_Missense_Mutation_p.P553L|NR3C1_uc003lnd.2_Missense_Mutation_p.P553L|NR3C1_uc003lne.2_Missense_Mutation_p.P553L|NR3C1_uc003lnf.2_Missense_Mutation_p.P554L	NM_000176	NP_000167	P04150	GCR_HUMAN	glucocorticoid receptor isoform alpha	553	Steroid-binding.				chromatin modification|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus|transcription from RNA polymerase II promoter	mitochondrial matrix|nucleoplasm	glucocorticoid receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(2;3.2e-05)|all_hematologic(2;0.000361)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)		Amcinonide(DB00288)|Betamethasone(DB00443)|Budesonide(DB01222)|Dexamethasone(DB01234)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluticasone Propionate(DB00588)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mifepristone(DB00834)|Mometasone(DB00764)|Prednisone(DB00635)	AGTTGAGTCTGGAACAGAGCT	0.468													78	237					0	0	1	0	0
KCTD16	57528	broad.mit.edu	37	5	143586695	143586695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:143586695G>A	uc003lnm.1	+	3	1047	c.418G>A	c.(418-420)GAA>AAA	p.E140K	KCTD16_uc003lnn.1_Missense_Mutation_p.E140K	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	140						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			CAGTGACTTTGAAGATGCCTC	0.527													27	76					0	0	1	0	0
SH3RF2	153769	broad.mit.edu	37	5	145442052	145442052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:145442052C>T	uc003lnt.2	+	10	2216	c.1978C>T	c.(1978-1980)CCC>TCC	p.P660S	SH3RF2_uc011dbl.1_Missense_Mutation_p.P660S|SH3RF2_uc003lnu.2_Missense_Mutation_p.P151S|SH3RF2_uc011dbn.1_Missense_Mutation_p.P151S|SH3RF2_uc011dbo.1_Missense_Mutation_p.P117S	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	660							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CACCTCCCATCCCACCTCCGG	0.557													78	51					0	0	1	0	0
SH3TC2	79628	broad.mit.edu	37	5	148388497	148388497	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:148388497A>G	uc003lpu.2	-	15	3547	c.3395T>C	c.(3394-3396)CTG>CCG	p.L1132P	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc010jgw.2_Missense_Mutation_p.L776P|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_Missense_Mutation_p.L679P|SH3TC2_uc010jgx.2_Missense_Mutation_p.L1125P	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	1132	TPR 6.						binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGCTCTGTCAGCTTATTGAA	0.527													33	99					0	0	1	0	0
PDE6A	5145	broad.mit.edu	37	5	149240510	149240510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:149240510C>T	uc003lrg.3	-	22	2651	c.2531G>A	c.(2530-2532)GGA>GAA	p.G844E		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	844					cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			GCTGGGGTTTCCCCCCGGCTG	0.572													25	17					0	0	1	0	0
NMUR2	56923	broad.mit.edu	37	5	151784321	151784321	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:151784321G>A	uc003luv.2	-	1	520	c.354C>T	c.(352-354)GGC>GGT	p.G118G		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	118	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			TGAAGTAGCAGCCCACGGGCC	0.607													37	85					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154396923	154396923	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:154396923C>T	uc010jih.1	+	1	3664	c.3504C>T	c.(3502-3504)ATC>ATT	p.I1168I		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	1168	Interaction with PRC1 (By similarity).|Globular (By similarity).				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			ATAGCAAGATCCTGAAAGAGA	0.527													48	42					0	0	1	0	0
HAVCR1	26762	broad.mit.edu	37	5	156479510	156479510	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:156479510G>A	uc010jij.1	-	4	720	c.535C>T	c.(535-537)CTG>TTG	p.L179L	HAVCR1_uc011ddl.1_Silent_p.L10L|HAVCR1_uc003lwi.2_Silent_p.L179L|HAVCR1_uc011ddm.1_Silent_p.L179L	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	174	7.|Extracellular (Potential).|11 X 6 AA approximate tandem repeats of V-P-T-T-T-T].|Thr-rich.			L -> P (in Ref. 1; AAC39862).	interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ATTGTCGTCAGAACAGTCGTT	0.463													351	354					0	0	1	0	0
FAM71B	153745	broad.mit.edu	37	5	156590640	156590640	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:156590640C>G	uc003lwn.2	-	2	736	c.636G>C	c.(634-636)CAG>CAC	p.Q212H		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	212						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CAGTCTCACTCTGATCCCCTT	0.512													75	50					0	0	1	0	0
ATP10B	23120	broad.mit.edu	37	5	160059352	160059352	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:160059352C>T	uc003lym.1	-	13	2251	c.1404G>A	c.(1402-1404)AAG>AAA	p.K468K	ATP10B_uc003lyn.2_Silent_p.K26K	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	468	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGTCCAGCTCCTTTGGGGTCT	0.517													65	55					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167525063	167525063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:167525063G>A	uc010jjd.2	+	9	1744	c.1744G>A	c.(1744-1746)GGG>AGG	p.G582R	ODZ2_uc003lzq.2_Missense_Mutation_p.G461R|ODZ2_uc003lzr.3_Missense_Mutation_p.G350R|uc003lzs.1_Intron	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TAACTGCCATGGGAATGGTGA	0.473													25	22					0	0	1	0	0
DOK3	79930	broad.mit.edu	37	5	176931915	176931915	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:176931915C>T	uc003mhk.2	-	5	647	c.642G>A	c.(640-642)GTG>GTA	p.V214V	DOK3_uc003mhh.3_Silent_p.V44V|DOK3_uc003mhi.3_Silent_p.V158V|DOK3_uc003mhj.3_Silent_p.V56V|DOK3_uc003mhl.2_Silent_p.V158V	NM_024872	NP_079148	Q7L591	DOK3_HUMAN	docking protein 3 isoform 1	214	IRS-type PTB.					cytoplasm|plasma membrane	insulin receptor binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			GAAACTCGCCCACTGTGGCAG	0.672													12	31					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178413575	178413575	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:178413575C>T	uc003mjr.2	-	8	1859	c.1680G>A	c.(1678-1680)GGG>GGA	p.G560G	GRM6_uc003mjq.2_5'Flank|GRM6_uc010jla.1_Silent_p.G143G|GRM6_uc003mjs.1_Silent_p.G180G	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	560	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GCCTCATGTCCCCAGGACAGG	0.692													23	23					0	0	1	0	0
FLT4	2324	broad.mit.edu	37	5	180039512	180039512	+	Silent	SNP	G	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr5:180039512G>C	uc003mma.3	-	26	3610	c.3531C>G	c.(3529-3531)GGC>GGG	p.G1177G	FLT4_uc003mlz.3_Silent_p.G1177G	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	1177	Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	TCACTTGCAGGCCCCTGCCCT	0.662									Congenital_Hereditary_Lymphedema				27	77					0	0	1	0	0
C6orf201	404220	broad.mit.edu	37	6	4099346	4099346	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:4099346C>T	uc003mwa.3	+	3	966	c.198C>T	c.(196-198)ATC>ATT	p.I66I	C6orf201_uc003mvz.3_RNA|C6orf201_uc011dhw.1_Silent_p.I66I|C6orf201_uc003mwb.3_RNA	NM_001085401	NP_001078870	Q7Z4U5	CF201_HUMAN	hypothetical protein LOC404220	66											0	Ovarian(93;0.0925)	all_hematologic(90;0.0895)				AAAGAAAAATCATCAACAATG	0.418													52	66					0	0	1	0	0
SSR1	6745	broad.mit.edu	37	6	7301714	7301714	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:7301714G>A	uc003mxf.3	-	4	560	c.372C>T	c.(370-372)TTC>TTT	p.F124F	SSR1_uc003mxg.3_Intron|SSR1_uc010jny.2_Silent_p.F124F	NM_003144	NP_003135	P43307	SSRA_HUMAN	signal sequence receptor, alpha precursor	124	Lumenal (Potential).				cotranslational protein targeting to membrane|positive regulation of cell proliferation	endoplasmic reticulum membrane|integral to membrane	signal sequence binding				0	Ovarian(93;0.0398)					GAGGATAACGGAATGAGGCAT	0.413													56	62					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7579526	7579526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:7579526G>A	uc003mxp.1	+	23	3382	c.3103G>A	c.(3103-3105)GAA>AAA	p.E1035K	DSP_uc003mxq.1_Missense_Mutation_p.E1035K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1035	Globular 1.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TACCAAGATCGAAGTTTTGGA	0.428													22	26					0	0	1	0	0
MAK	4117	broad.mit.edu	37	6	10802154	10802154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:10802154C>T	uc003mzl.2	-	7	1031	c.802G>A	c.(802-804)GAT>AAT	p.D268N	SYCP2L_uc011dim.1_Intron|TMEM14B_uc010jos.1_Intron|MAK_uc010jot.2_RNA|MAK_uc010jou.2_RNA|MAK_uc003mzm.2_Missense_Mutation_p.D268N|MAK_uc010jov.1_RNA	NM_005906	NP_005897	P20794	MAK_HUMAN	male germ cell-associated kinase	268	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|cyclin-dependent protein kinase activity			breast(2)|skin(1)	3	Breast(50;0.107)|Ovarian(93;0.107)	all_hematologic(90;0.117)				TTCTTTGGATCCCAATTCAAC	0.388											OREG0017187	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	53	82					0	0	1	0	0
GFOD1	54438	broad.mit.edu	37	6	13365623	13365623	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:13365623G>A	uc003nat.1	-	2	1190	c.525C>T	c.(523-525)TCC>TCT	p.S175S	GFOD1_uc003nas.1_Silent_p.S72S	NM_018988	NP_061861	Q9NXC2	GFOD1_HUMAN	glucose-fructose oxidoreductase domain	175						extracellular region	binding|oxidoreductase activity			ovary(2)	2	Breast(50;0.0296)|Ovarian(93;0.0454)	all_hematologic(90;0.135)	Epithelial(50;0.0348)|BRCA - Breast invasive adenocarcinoma(129;0.1)|all cancers(50;0.108)			AGGTGCCCACGGAGTGCAGGC	0.632													14	17					0	0	1	0	0
CAP2	10486	broad.mit.edu	37	6	17541254	17541254	+	Silent	SNP	C	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:17541254C>A	uc003ncb.2	+	9	1120	c.877C>A	c.(877-879)CGG>AGG	p.R293R	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Silent_p.R267R|CAP2_uc011djb.1_Silent_p.R229R|CAP2_uc011djc.1_Silent_p.R181R|CAP2_uc011djd.1_Intron	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	293					activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			TCCCAGCCTGCGGGCTCAAGG	0.468													130	195					6.59513e-52	6.69165e-52	1	1	0
KIAA0319	9856	broad.mit.edu	37	6	24566965	24566965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:24566965G>A	uc011djo.1	-	14	2389	c.2152C>T	c.(2152-2154)CCT>TCT	p.P718S	KIAA0319_uc011djp.1_Missense_Mutation_p.P673S|KIAA0319_uc003neh.1_Missense_Mutation_p.P718S|KIAA0319_uc011djq.1_Missense_Mutation_p.P709S|KIAA0319_uc011djr.1_Missense_Mutation_p.P718S|KIAA0319_uc010jpt.1_Missense_Mutation_p.P129S	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	718	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						GCTCTGGGAGGACTATTATTT	0.383													72	104					0	0	1	0	0
GPX6	257202	broad.mit.edu	37	6	28483479	28483479	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:28483479G>A	uc011dlj.1	-	1	92	c.42C>T	c.(40-42)TTC>TTT	p.F14F	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	14					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	AGCCAACCAGGAAAAACAGGA	0.547													45	69					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28542726	28542726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:28542726G>A	uc003nlo.2	-	3	2374	c.1756C>T	c.(1756-1758)CCT>TCT	p.P586S		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	586					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GCCACCTTAGGAGTGACAGAA	0.378													22	27					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28543503	28543503	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:28543503C>T	uc003nlo.2	-	3	1597	c.979G>A	c.(979-981)GAG>AAG	p.E327K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	327					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AACTCTTTCTCCATGCGAGTA	0.373													62	124					0	0	1	0	0
OR10C1	442194	broad.mit.edu	37	6	29408570	29408570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:29408570C>T	uc011dlp.1	+	1	778	c.778C>T	c.(778-780)CGC>TGC	p.R260C	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	260	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TATCTATATTCGCCCTAAGGC	0.582													180	295					0	0	1	0	0
CYP21A2	1589	broad.mit.edu	37	6	32008216	32008216	+	Missense_Mutation	SNP	G	A	A	rs150804717		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:32008216G>A	uc003nze.1	+	8	1091	c.973G>A	c.(973-975)GAA>AAA	p.E325K	CYP21A2_uc003nzf.1_Missense_Mutation_p.E295K	NM_000500	NP_000491	P08686	CP21A_HUMAN	cytochrome P450, family 21, subfamily A,	324					glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|steroid 21-monooxygenase activity|steroid binding				0						GCTAGACCACGAACTGGGCCC	0.682													22	51					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32011576	32011576	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:32011576G>A	uc003nzl.2	-	35	11676	c.11474C>T	c.(11473-11475)TCG>TTG	p.S3825L	TNXB_uc003nzg.1_Missense_Mutation_p.S256L|TNXB_uc003nzh.1_Missense_Mutation_p.S294L	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3872	Fibronectin type-III 30.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GCCTCGGACCGAGACCACGGT	0.627													79	113					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32017225	32017225	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:32017225G>A	uc003nzl.2	-	28	9775	c.9573C>T	c.(9571-9573)TTC>TTT	p.F3191F	TNXB_uc003nzh.1_5'Flank	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3238	Fibronectin type-III 24.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGAAGGAGTCGAAGCGGCCCT	0.701													47	78					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32020485	32020485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:32020485C>T	uc003nzl.2	-	26	9273	c.9071G>A	c.(9070-9072)GGG>GAG	p.G3024E		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3071	Fibronectin type-III 22.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CACGCGCTGCCCCTCGTGGAG	0.657													53	97					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32023880	32023880	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:32023880G>A	uc003nzl.2	-	24	8417	c.8215C>T	c.(8215-8217)CTG>TTG	p.L2739L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2797	Fibronectin type-III 20.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						AGCTCCCCCAGGAGCGGCTCC	0.627													54	65					0	0	1	0	0
HLA-DPB1	3115	broad.mit.edu	37	6	33052751	33052751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:33052751C>T	uc003ocu.1	+	3	448	c.389C>T	c.(388-390)CCC>CTC	p.P130L	HLA-DPB1_uc011dqo.1_RNA|HLA-DPB1_uc011dqp.1_Missense_Mutation_p.P129L|HLA-DPB1_uc011dqq.1_Missense_Mutation_p.P26L	NM_002121	NP_002112	P04440	DPB1_HUMAN	major histocompatibility complex, class II, DP	130	Beta-2.|Ig-like C1-type.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to membrane|lysosomal membrane|MHC class II protein complex				ovary(1)	1						AATGTTTCCCCCTCCAAGAAG	0.418													72	99					0	0	1	0	0
RXRB	6257	broad.mit.edu	37	6	33168121	33168121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:33168121G>A	uc003odb.2	-	1	312	c.133C>T	c.(133-135)CCC>TCC	p.P45S	RXRB_uc003odc.2_Missense_Mutation_p.P45S|RXRB_uc003odd.2_Silent_p.I31I|RXRB_uc011dqr.1_Intron|RXRB_uc011dqs.1_Missense_Mutation_p.P45S|RXRB_uc003ode.1_5'Flank|RXRB_uc011dqt.1_Missense_Mutation_p.P45S|RXRB_uc011dqu.1_Silent_p.I31I|SLC39A7_uc003odf.2_5'Flank|SLC39A7_uc003odg.2_5'Flank|SLC39A7_uc011dqv.1_5'Flank|SLC39A7_uc003odh.2_5'Flank	NM_021976	NP_068811	P28702	RXRB_HUMAN	retinoid X receptor, beta	45	Modulating (By similarity).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	ligand-regulated transcription factor activity|retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			ovary(3)	3					Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Bexarotene(DB00307)|Etretinate(DB00926)|Tazarotene(DB00799)|Tretinoin(DB00755)	gccgctgcGGGATCCAGCCAG	0.597													8	8					0	0	1	0	0
PHF1	5252	broad.mit.edu	37	6	33382582	33382582	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:33382582C>T	uc003oeh.2	+	11	1261	c.1025C>T	c.(1024-1026)CCT>CTT	p.P342L	PHF1_uc011drh.1_RNA|PHF1_uc003oei.2_Missense_Mutation_p.P342L|PHF1_uc010jux.2_Missense_Mutation_p.P142L	NM_024165	NP_077084	O43189	PHF1_HUMAN	PHD finger protein 1 isoform b	342					chromatin modification	nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(999;0.0443)				GTGGAGCCCCCTACTGGAGAT	0.527											OREG0017346	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	51	78					0	0	1	0	0
ITPR3	3710	broad.mit.edu	37	6	33632946	33632946	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:33632946C>T	uc011drk.1	+	13	1584	c.1365C>T	c.(1363-1365)GCC>GCT	p.A455A		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	455	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						TGGCCAGTGCCGTGGAGAAAC	0.597													5	202					0	0	1	0	0
C6orf81	221481	broad.mit.edu	37	6	35715184	35715184	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:35715184C>T	uc003ola.2	+	4	699	c.672C>T	c.(670-672)ATC>ATT	p.I224I	C6orf81_uc003olb.1_Silent_p.I197I	NM_145028	NP_659465	Q5T9G4	CF081_HUMAN	hypothetical protein LOC221481	197	ARM 2.						binding			ovary(1)	1						TGATGGAGATCCTGCAGTCAG	0.592													26	55					0	0	1	0	0
MAPK14	1432	broad.mit.edu	37	6	36070422	36070422	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:36070422C>T	uc003olp.2	+	10	1318	c.837C>T	c.(835-837)CCC>CCT	p.P279P	MAPK14_uc003olo.2_Silent_p.P279P|MAPK14_uc003olq.2_Silent_p.P279P|MAPK14_uc003olr.2_Intron|MAPK14_uc011dti.1_Silent_p.P202P	NM_001315	NP_001306	Q16539	MK14_HUMAN	mitogen-activated protein kinase 14 isoform 1	279	Protein kinase.				activation of MAPK activity|cellular component movement|cellular response to ionizing radiation|chemotaxis|innate immune response|mRNA metabolic process|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of muscle cell differentiation|positive regulation of reactive oxygen species metabolic process|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|signal transduction in response to DNA damage|stress-activated MAPK cascade|stress-induced premature senescence|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase activity|MAP kinase kinase activity|protein binding			ovary(2)|stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	6						GTGCCAATCCCCTGGGTAAGT	0.368													67	125					0	0	1	0	0
BRPF3	27154	broad.mit.edu	37	6	36169144	36169144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:36169144C>T	uc003olv.3	+	2	1269	c.1045C>T	c.(1045-1047)CAT>TAT	p.H349Y	BRPF3_uc010jwb.2_Missense_Mutation_p.H349Y|BRPF3_uc011dtj.1_RNA|BRPF3_uc010jwc.2_RNA|BRPF3_uc011dtk.1_Missense_Mutation_p.H349Y	NM_015695	NP_056510	Q9ULD4	BRPF3_HUMAN	bromodomain and PHD finger containing, 3	349					histone H3 acetylation|platelet activation|platelet degranulation	cytosol|extracellular region|MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						CACAGCATTCCATGTGACATG	0.537													16	24					0	0	1	0	0
MDGA1	266727	broad.mit.edu	37	6	37612300	37612300	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:37612300G>A	uc003onu.1	-	13	3553	c.2374C>T	c.(2374-2376)CCC>TCC	p.P792S	MDGA1_uc003onv.1_Missense_Mutation_p.P61S	NM_153487	NP_705691	Q8NFP4	MDGA1_HUMAN	MAM domain containing	792	MAM.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)	2						ATGTCGGTGGGGGGACCAGTG	0.607													8	23					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38738238	38738238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:38738238G>A	uc003ooe.1	+	10	1616	c.1016G>A	c.(1015-1017)AGG>AAG	p.R339K		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CATAAAACAAGGAAACTGATT	0.323													14	27					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38854597	38854597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:38854597G>A	uc003ooe.1	+	55	8239	c.7639G>A	c.(7639-7641)GAA>AAA	p.E2547K		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ACAGATGATGGAAATGGAAGG	0.388													58	103					0	0	1	0	0
KIF6	221458	broad.mit.edu	37	6	39512337	39512337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:39512337C>T	uc003oot.2	-	12	1515	c.1420G>A	c.(1420-1422)GAA>AAA	p.E474K	KIF6_uc010jxa.1_Missense_Mutation_p.E265K|KIF6_uc011dua.1_Missense_Mutation_p.E474K|KIF6_uc010jxb.1_Missense_Mutation_p.E474K	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	474	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						ATACTGATTTCGTTATCTCTC	0.408													22	31					0	0	1	0	0
RCAN2	10231	broad.mit.edu	37	6	46216633	46216633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:46216633C>T	uc003oyb.1	-	2	403	c.88G>A	c.(88-90)GAA>AAA	p.E30K	RCAN2_uc003oyc.1_Missense_Mutation_p.E76K|RCAN2_uc003oyd.1_Missense_Mutation_p.E76K	NM_005822	NP_005813	Q14206	RCAN2_HUMAN	Down syndrome critical region gene 1-like 1	30					calcium-mediated signaling|central nervous system development		nucleotide binding|protein phosphatase 2B binding				0						TCAAATTTTTCCTGATAAAAA	0.368													14	36					0	0	1	0	0
GPR110	266977	broad.mit.edu	37	6	46977272	46977272	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:46977272G>A	uc003oyt.2	-	11	2098	c.1899C>T	c.(1897-1899)TCC>TCT	p.S633S	GPR110_uc011dwl.1_Silent_p.S321S	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	633	Helical; Name=2; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						CAATCAAGAGGGACAGGGCTA	0.458													16	32					0	0	1	0	0
GPR111	222611	broad.mit.edu	37	6	47649087	47649087	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:47649087C>T	uc010jzj.1	+	6	793	c.792C>T	c.(790-792)ATC>ATT	p.I264I	GPR111_uc010jzk.1_Silent_p.I196I|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	264	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						GCAGCTATATCCTGCTACATT	0.408													62	89					0	0	1	0	0
OPN5	221391	broad.mit.edu	37	6	47754290	47754290	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:47754290T>A	uc003ozc.2	+	2	175	c.170T>A	c.(169-171)ATG>AAG	p.M57K	OPN5_uc003ozd.2_5'Flank	NM_181744	NP_859528	Q6U736	OPN5_HUMAN	opsin 5 isoform 1	57	Cytoplasmic (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to membrane	G-protein coupled receptor activity|photoreceptor activity			ovary(1)	1						GTCCTTTACATGTCTTCTAGA	0.378													39	35					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51611535	51611535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:51611535G>A	uc003pah.1	-	59	10258	c.9982C>T	c.(9982-9984)CCT>TCT	p.P3328S	PKHD1_uc010jzn.1_Missense_Mutation_p.P1311S|PKHD1_uc003pai.2_Missense_Mutation_p.P3328S	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3328	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TGTAATGAAGGAAAGTAGAAC	0.333													29	71					0	0	1	0	0
KLHL31	401265	broad.mit.edu	37	6	53519485	53519485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:53519485G>A	uc003pcb.3	-	2	727	c.586C>T	c.(586-588)CGG>TGG	p.R196W		NM_001003760	NP_001003760	Q9H511	KLH31_HUMAN	kelch repeat and BTB (POZ) domain containing 1	196	BACK.				regulation of transcription, DNA-dependent|transcription, DNA-dependent					ovary(1)	1	Lung NSC(77;0.0158)					AAGTTATCCCGAATAAATTTC	0.348													36	48					0	0	1	0	0
KLHL31	401265	broad.mit.edu	37	6	53519615	53519615	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:53519615G>A	uc003pcb.3	-	2	597	c.456C>T	c.(454-456)ATC>ATT	p.I152I		NM_001003760	NP_001003760	Q9H511	KLH31_HUMAN	kelch repeat and BTB (POZ) domain containing 1	152					regulation of transcription, DNA-dependent|transcription, DNA-dependent					ovary(1)	1	Lung NSC(77;0.0158)					CAAGAGTATGGATCTGAAGAT	0.393													77	95					0	0	1	0	0
BMP5	653	broad.mit.edu	37	6	55639005	55639005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:55639005C>T	uc003pcq.2	-	4	1581	c.869G>A	c.(868-870)GGA>GAA	p.G290E	BMP5_uc011dxf.1_Missense_Mutation_p.G290E	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	290					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			TCCCTGTCTTCCCACAAGACC	0.423													33	46					0	0	1	0	0
BMP5	653	broad.mit.edu	37	6	55739427	55739427	+	Silent	SNP	G	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:55739427G>T	uc003pcq.2	-	1	949	c.237C>A	c.(235-237)CTC>CTA	p.L79L	BMP5_uc011dxf.1_Silent_p.L79L	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	79					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			CCAGCATAAAGAGAGGTGCAG	0.473													45	49					2.79147e-13	2.80495e-13	1	1	0
COL21A1	81578	broad.mit.edu	37	6	55924969	55924969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:55924969G>A	uc003pcs.2	-	28	2687	c.2455C>T	c.(2455-2457)CAT>TAT	p.H819Y	COL21A1_uc010jzz.2_Missense_Mutation_p.H204Y|COL21A1_uc011dxg.1_Missense_Mutation_p.H192Y|COL21A1_uc011dxh.1_Intron|COL21A1_uc003pcr.2_Missense_Mutation_p.H176Y	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	819					cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			GACAGGCAATGATCACAATTT	0.493													9	20					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	55925689	55925690	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:55925689_55925690GG>AA	uc003pcs.2	-	26	2583_2584	c.2351_2352CC>TT	c.(2350-2352)CCC>CTT	p.P784L	COL21A1_uc010jzz.2_Missense_Mutation_p.P169L|COL21A1_uc011dxg.1_Missense_Mutation_p.P157L|COL21A1_uc011dxh.1_Missense_Mutation_p.P169L|COL21A1_uc003pcr.2_Missense_Mutation_p.P141L	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	784	Collagen-like 5.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			GAATACATACGGGCTTCCCATC	0.485													3	11					0	0	1	0	0
LGSN	51557	broad.mit.edu	37	6	63990658	63990658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:63990658C>T	uc003peh.2	-	4	832	c.798G>A	c.(796-798)ATG>ATA	p.M266I	LGSN_uc003pei.2_Intron	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	266					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	AAGAGATTTCCATCTGACCAG	0.438													21	37					0	0	1	0	0
PHF3	23469	broad.mit.edu	37	6	64421686	64421686	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:64421686C>T	uc003pep.1	+	15	4228	c.4202C>T	c.(4201-4203)TCT>TTT	p.S1401F	PHF3_uc003pen.2_Missense_Mutation_p.S1313F|PHF3_uc011dxs.1_Missense_Mutation_p.S670F	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	1401					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			TTTTTTAATTCTTTTACAACT	0.373													46	65					0	0	1	0	0
COL9A1	1297	broad.mit.edu	37	6	71004057	71004057	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:71004057G>A	uc003pfg.3	-	5	668	c.509C>T	c.(508-510)TCG>TTG	p.S170L		NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	170	Nonhelical region (NC4).|TSP N-terminal.				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						GGACAAATTCGAAAAGGCTGC	0.428													63	103					0	0	1	0	0
RIMS1	22999	broad.mit.edu	37	6	73001643	73001643	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:73001643C>T	uc003pga.2	+	26	3821	c.3744C>T	c.(3742-3744)CAC>CAT	p.H1248H	RIMS1_uc011dyb.1_Silent_p.H645H|RIMS1_uc003pgc.2_Silent_p.H697H|RIMS1_uc010kaq.2_Silent_p.H568H|RIMS1_uc011dyc.1_Silent_p.H545H|RIMS1_uc010kar.2_Silent_p.H488H|RIMS1_uc011dyd.1_Silent_p.H554H|RIMS1_uc003pgf.2_Silent_p.H257H|RIMS1_uc003pgg.2_Silent_p.H316H|RIMS1_uc003pgi.2_Silent_p.H236H|RIMS1_uc003pgh.2_Silent_p.H287H|RIMS1_uc003pgd.2_Silent_p.H314H|RIMS1_uc003pge.2_Silent_p.H288H|RIMS1_uc011dye.1_Silent_p.H44H|RIMS1_uc011dyf.1_Silent_p.H44H	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1248					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				GCAGAATGCACCGACAGAGAA	0.468													6	7					0	0	1	0	0
MYO6	4646	broad.mit.edu	37	6	76623860	76623861	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:76623860_76623861CC>TT	uc003pih.1	+	34	3799_3800	c.3520_3521CC>TT	c.(3520-3522)CCA>TTA	p.P1174L	MYO6_uc003pii.1_Missense_Mutation_p.P1151L|MYO6_uc003pij.1_Missense_Mutation_p.P122L	NM_004999	NP_004990	Q9UM54	MYO6_HUMAN	myosin VI	1183					actin filament-based movement|DNA damage response, signal transduction by p53 class mediator|endocytosis|intracellular protein transport|positive regulation of transcription from RNA polymerase II promoter|regulation of secretion|sensory perception of sound|synaptic transmission	cell cortex|clathrin coated vesicle membrane|coated pit|cytosol|DNA-directed RNA polymerase II, holoenzyme|filamentous actin|Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|ruffle membrane|unconventional myosin complex	actin filament binding|ADP binding|ATP binding|calmodulin binding|minus-end directed microfilament motor activity|protein binding			kidney(1)|pancreas(1)	2		all_hematologic(105;0.189)		BRCA - Breast invasive adenocarcinoma(397;0.223)		CTTCCGCATCCCATTCATCCGC	0.51													92	38					0	0	1	0	0
AIM1	202	broad.mit.edu	37	6	106969110	106969110	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:106969110C>T	uc003prh.2	+	2	3290	c.2803C>T	c.(2803-2805)CTG>TTG	p.L935L		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	935							sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		CAAAGAAGATCTGGATTCACG	0.363													38	10					0	0	1	0	0
DSE	29940	broad.mit.edu	37	6	116756873	116756873	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:116756873C>T	uc003pws.2	+	6	1436	c.1242C>T	c.(1240-1242)TTC>TTT	p.F414F	DSE_uc011ebg.1_Silent_p.F433F|DSE_uc003pwt.2_Silent_p.F414F|DSE_uc003pwu.2_Silent_p.F81F	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	414					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		ATAGATCTTTCCTTTCCTTCA	0.418													31	9					0	0	1	0	0
RFX6	222546	broad.mit.edu	37	6	117248222	117248222	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:117248222C>T	uc003pxm.2	+	17	1981	c.1918C>T	c.(1918-1920)CTG>TTG	p.L640L		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	640					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						TGCTGGTCATCTGATGACACC	0.463													80	30					0	0	1	0	0
HSF2	3298	broad.mit.edu	37	6	122744078	122744078	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:122744078A>T	uc003pyu.2	+	9	1233	c.1046A>T	c.(1045-1047)AAT>ATT	p.N349I	HSF2_uc003pyv.2_Missense_Mutation_p.N349I	NM_004506	NP_004497	Q03933	HSF2_HUMAN	heat shock transcription factor 2 isoform a	349					response to stress|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0				OV - Ovarian serous cystadenocarcinoma(136;0.00371)|all cancers(137;0.0299)|GBM - Glioblastoma multiforme(226;0.0586)		TCCATTTTGAATGATAACATC	0.403													32	12					0	0	1	0	0
THEMIS	387357	broad.mit.edu	37	6	128176241	128176241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:128176241C>T	uc003qbi.2	-	3	503	c.184G>A	c.(184-186)GAA>AAA	p.E62K	THEMIS_uc010kfa.2_5'UTR|THEMIS_uc011ebt.1_Missense_Mutation_p.E62K|THEMIS_uc010kfb.2_Missense_Mutation_p.E27K	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	62	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TCACAAATTTCAGCTATGATC	0.358													26	5					0	0	1	0	0
TAAR6	319100	broad.mit.edu	37	6	132892410	132892410	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:132892410G>A	uc011eck.1	+	1	950	c.950G>A	c.(949-951)TGG>TAG	p.W317*		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	317	Cytoplasmic (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		TTTTACCCATGGTTTAGGAAA	0.338													61	19					0	0	1	0	0
TAAR2	9287	broad.mit.edu	37	6	132939105	132939105	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:132939105G>A	uc003qdl.1	-	2	240	c.240C>T	c.(238-240)TTC>TTT	p.F80F	TAAR2_uc010kfr.1_Silent_p.F35F	NM_001033080	NP_001028252	Q9P1P5	TAAR2_HUMAN	trace amine associated receptor 2 isoform 1	80	Helical; Name=2; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00608)|GBM - Glioblastoma multiforme(226;0.0151)		AGAGGATGAGGAAGTTGGTTG	0.423													69	31					0	0	1	0	0
MAP7	9053	broad.mit.edu	37	6	136683760	136683760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:136683760C>T	uc003qgz.2	-	11	1600	c.1354G>A	c.(1354-1356)GCC>ACC	p.A452T	MAP7_uc011edf.1_Missense_Mutation_p.A437T|MAP7_uc011edg.1_Missense_Mutation_p.A482T|MAP7_uc010kgu.2_Missense_Mutation_p.A474T|MAP7_uc011edh.1_Missense_Mutation_p.A437T|MAP7_uc010kgv.2_Missense_Mutation_p.A474T|MAP7_uc010kgs.2_Missense_Mutation_p.A306T|MAP7_uc011edi.1_Missense_Mutation_p.A306T|MAP7_uc010kgq.1_Missense_Mutation_p.A358T|MAP7_uc003qha.1_Missense_Mutation_p.A415T	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	452					establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		gagaccatggctggggtgggg	0.279													6	8					0	0	1	0	0
GRM1	2911	broad.mit.edu	37	6	146351039	146351039	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:146351039C>G	uc010khw.1	+	2	856	c.386C>G	c.(385-387)TCC>TGC	p.S129C	GRM1_uc010khu.1_Missense_Mutation_p.S129C|GRM1_uc010khv.1_Missense_Mutation_p.S129C|GRM1_uc003qll.2_Missense_Mutation_p.S129C|GRM1_uc011edz.1_Missense_Mutation_p.S129C|GRM1_uc011eea.1_Missense_Mutation_p.S129C	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	129	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	TCTCTGATTTCCATTCGAGAT	0.582													53	19					0	0	1	0	0
RMND1	55005	broad.mit.edu	37	6	151757651	151757651	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:151757651C>A	uc003qoi.2	-	3	723	c.543G>T	c.(541-543)GAG>GAT	p.E181D	RMND1_uc011eeq.1_5'UTR|RMND1_uc003qoj.2_Missense_Mutation_p.E181D|RMND1_uc011eer.1_Missense_Mutation_p.E181D	NM_017909	NP_060379	Q9NWS8	RMND1_HUMAN	required for meiotic nuclear division 1 homolog	181											0		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.146)	OV - Ovarian serous cystadenocarcinoma(155;6.8e-11)		CCAGATGATACTCATCTGCCG	0.488													3	82					0.150653	0.150861	1	1	0
SYNE1	23345	broad.mit.edu	37	6	152668338	152668338	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:152668338G>A	uc010kiw.2	-	73	12536	c.11934C>T	c.(11932-11934)GAC>GAT	p.D3978D	SYNE1_uc003qot.3_Silent_p.D3907D|SYNE1_uc003qou.3_Silent_p.D3978D|SYNE1_uc010kja.1_Silent_p.D683D	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	3978	Spectrin 10.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGTTCAAACGGTCTTCAAAAC	0.378										HNSCC(10;0.0054)			32	16					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152765628	152765628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:152765628G>A	uc010kiw.2	-	30	4357	c.3755C>T	c.(3754-3756)TCT>TTT	p.S1252F	SYNE1_uc003qot.3_Missense_Mutation_p.S1259F|SYNE1_uc003qou.3_Missense_Mutation_p.S1252F|SYNE1_uc010kjb.1_Missense_Mutation_p.S1235F|SYNE1_uc003qow.2_Missense_Mutation_p.S547F|SYNE1_uc003qox.1_Missense_Mutation_p.S768F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1252	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GACTTCTTTAGAGCCAGAAAT	0.363										HNSCC(10;0.0054)			56	14					0	0	1	0	0
PLG	5340	broad.mit.edu	37	6	161139760	161139760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:161139760G>A	uc003qtm.3	+	9	1049	c.986G>A	c.(985-987)GGA>GAA	p.G329E		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	329	Kringle 3.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	AATCCTGACGGAAAAAGGGCC	0.463													25	10					0	0	1	0	0
C6orf118	168090	broad.mit.edu	37	6	165706911	165706911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr6:165706911C>T	uc003qum.3	-	6	1147	c.1111G>A	c.(1111-1113)GAA>AAA	p.E371K	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	371	Potential.										0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		CCTGATCGTTCCTTTGCAGAC	0.458													148	46					0	0	1	0	0
GET4	51608	broad.mit.edu	37	7	933448	933449	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:933448_933449AC>TT	uc003sjl.1	+	7	910_911	c.818_819AC>TT	c.(817-819)AAC>ATT	p.N273I	GET4_uc003sjj.1_RNA	NM_015949	NP_057033	Q7L5D6	GET4_HUMAN	hypothetical protein LOC51608	273					tail-anchored membrane protein insertion into ER membrane|transport	BAT3 complex	protein binding				0						CCCATGTACAACGAGGTGAGAG	0.644													11	15					0	0	1	0	0
FTSJ2	29960	broad.mit.edu	37	7	2279104	2279104	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:2279104G>A	uc003slm.2	-	2	276	c.247C>T	c.(247-249)CCT>TCT	p.P83S	FTSJ2_uc003slk.2_5'UTR|FTSJ2_uc003sll.2_5'UTR|FTSJ2_uc003sln.2_RNA|FTSJ2_uc003slo.2_5'UTR|NUDT1_uc003slp.1_5'Flank|NUDT1_uc003slq.1_5'Flank|NUDT1_uc003slr.1_5'Flank|NUDT1_uc003sls.1_5'Flank|NUDT1_uc003slt.1_5'Flank	NM_013393	NP_037525	Q9UI43	RRMJ2_HUMAN	FtsJ homolog 2	83	S-adenosyl-L-methionine binding.				cell proliferation	mitochondrion|nucleolus	nucleic acid binding|rRNA (uridine-2'-O-)-methyltransferase activity			ovary(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0822)|OV - Ovarian serous cystadenocarcinoma(56;2.7e-14)		CAGGCCCCAGGAGCTGCCCCA	0.647													6	7					0	0	1	0	0
FTSJ2	29960	broad.mit.edu	37	7	2279136	2279136	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:2279136G>A	uc003slm.2	-	2	244	c.215C>T	c.(214-216)CCC>CTC	p.P72L	FTSJ2_uc003slk.2_5'UTR|FTSJ2_uc003sll.2_5'UTR|FTSJ2_uc003sln.2_RNA|FTSJ2_uc003slo.2_5'UTR|NUDT1_uc003slp.1_5'Flank|NUDT1_uc003slq.1_5'Flank|NUDT1_uc003slr.1_5'Flank|NUDT1_uc003sls.1_5'Flank|NUDT1_uc003slt.1_5'Flank	NM_013393	NP_037525	Q9UI43	RRMJ2_HUMAN	FtsJ homolog 2	72					cell proliferation	mitochondrion|nucleolus	nucleic acid binding|rRNA (uridine-2'-O-)-methyltransferase activity			ovary(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0822)|OV - Ovarian serous cystadenocarcinoma(56;2.7e-14)		CCGAAGGCCGGGCCGCAGAAT	0.637													13	11					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4247761	4247761	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:4247761G>A	uc003smx.2	+	37	5384	c.5245G>A	c.(5245-5247)GAA>AAA	p.E1749K	SDK1_uc010kso.2_Missense_Mutation_p.E1005K|SDK1_uc003smy.2_Missense_Mutation_p.E236K	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1749	Fibronectin type-III 11.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CAGCCAGAACGAAACGGAGAA	0.552													25	65					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4260977	4260977	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:4260977G>A	uc003smx.2	+	40	5947	c.5808G>A	c.(5806-5808)GTG>GTA	p.V1936V	SDK1_uc010kso.2_Silent_p.V1192V|SDK1_uc003smy.2_Silent_p.V423V	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1936	Fibronectin type-III 13.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CGGGCTATGTGATCGAGGCCC	0.637													4	11					0	0	1	0	0
MMD2	221938	broad.mit.edu	37	7	4965103	4965103	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:4965103C>T	uc003sno.3	-	2	304	c.108G>A	c.(106-108)GCG>GCA	p.A36A	MMD2_uc003snl.1_RNA|MMD2_uc003snn.3_Silent_p.A36A|MMD2_uc010ksq.2_Silent_p.A36A	NM_001100600	NP_001094070	Q8IY49	PAQRA_HUMAN	monocyte to macrophage	36	Cytoplasmic (Potential).					integral to membrane	receptor activity			central_nervous_system(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.097)|OV - Ovarian serous cystadenocarcinoma(56;3.4e-14)		CACAGTTGGCCGCATGTTCAT	0.602													39	83					0	0	1	0	0
COL28A1	340267	broad.mit.edu	37	7	7420457	7420457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:7420457C>T	uc003src.1	-	29	2359	c.2242G>A	c.(2242-2244)GGT>AGT	p.G748S	COL28A1_uc011jxe.1_Missense_Mutation_p.G431S	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	748	Collagen-like 6.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		CCTTTATCACCTTTCTTTCCC	0.408													28	83					0	0	1	0	0
MIOS	54468	broad.mit.edu	37	7	7645637	7645637	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:7645637C>T	uc003srf.2	+	12	2774	c.2466C>T	c.(2464-2466)AAC>AAT	p.N822N	MIOS_uc003srg.2_Silent_p.N357N|MIOS_uc010ktq.2_Silent_p.N217N	NM_019005	NP_061878	Q9NXC5	MIO_HUMAN	missing oocyte, meiosis regulator, homolog	822											0						AATTTAACAACTGGTTTACAT	0.378													31	66					0	0	1	0	0
SOSTDC1	25928	broad.mit.edu	37	7	16502464	16502464	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:16502464G>A	uc003stg.2	-	2	511	c.330C>T	c.(328-330)CTC>CTT	p.L110L	SOSTDC1_uc003sth.2_Silent_p.L134L	NM_015464	NP_056279	Q6X4U4	SOSD1_HUMAN	sclerostin domain containing 1 precursor	110	CTCK.				Wnt receptor signaling pathway					ovary(2)|central_nervous_system(1)	3	Lung NSC(10;0.185)			UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		TCCAGTTAGGGAGCACTGGCA	0.562													22	49					0	0	1	0	0
MACC1	346389	broad.mit.edu	37	7	20198468	20198468	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:20198468C>T	uc003sus.3	-	5	1825	c.1516G>A	c.(1516-1518)GAT>AAT	p.D506N	MACC1_uc010kug.2_Missense_Mutation_p.D506N	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	506					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						GGGGTTGGATCAGGAGTAGTG	0.418													37	60					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21698617	21698617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:21698617G>A	uc003svc.2	+	30	5342	c.5311G>A	c.(5311-5313)GAA>AAA	p.E1771K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1771	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AGAAGGCTACGAAACAGCCCT	0.388									Kartagener_syndrome				3	4					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23810627	23810627	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:23810627C>T	uc003sws.3	+	14	1784	c.1717C>T	c.(1717-1719)CAA>TAA	p.Q573*	STK31_uc003swt.3_Nonsense_Mutation_p.Q550*|STK31_uc011jze.1_Nonsense_Mutation_p.Q573*|STK31_uc010kuq.2_Nonsense_Mutation_p.Q550*	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	573							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						CATTTAGGATCAAGGTGATGC	0.338													21	58					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23825146	23825146	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:23825146C>T	uc003sws.3	+	18	2265	c.2198C>T	c.(2197-2199)GCT>GTT	p.A733V	STK31_uc003swt.3_Missense_Mutation_p.A710V|STK31_uc011jze.1_Missense_Mutation_p.A733V|STK31_uc010kuq.2_Missense_Mutation_p.A710V|STK31_uc003swv.1_5'Flank	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	733	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						CTTCTTGATGCTGAGCCCATG	0.418													42	85					0	0	1	0	0
CHN2	1124	broad.mit.edu	37	7	29546896	29546896	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:29546896C>T	uc003szz.2	+	11	1481	c.1044C>T	c.(1042-1044)ATC>ATT	p.I348I	CHN2_uc011jzs.1_Silent_p.I423I|CHN2_uc010kva.2_Intron|CHN2_uc010kvb.2_Intron|CHN2_uc010kvc.2_Silent_p.I313I|CHN2_uc011jzt.1_Silent_p.I361I|CHN2_uc010kvd.2_Silent_p.I204I|CHN2_uc011jzu.1_Silent_p.I333I|CHN2_uc010kvg.2_Intron|CHN2_uc010kvh.2_Intron|CHN2_uc010kvi.2_Intron|CHN2_uc010kve.2_Intron|CHN2_uc003taa.2_Silent_p.I212I|CHN2_uc010kvf.2_Silent_p.I154I|CHN2_uc010kvj.2_Intron|CHN2_uc010kvk.2_Silent_p.I23I|CHN2_uc010kvl.2_Intron|CHN2_uc010kvm.2_Silent_p.I167I|CHN2_uc011jzv.1_Silent_p.I141I	NM_004067	NP_004058	P52757	CHIO_HUMAN	beta chimerin isoform 2	348	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|membrane	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(2)	2						TAAACATCATCACTGGAGCCC	0.378													17	28					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	31887706	31887706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:31887706C>T	uc003tcm.1	-	9	1325	c.856G>A	c.(856-858)GAT>AAT	p.D286N	PDE1C_uc003tcn.1_Missense_Mutation_p.D286N|PDE1C_uc003tco.1_Missense_Mutation_p.D346N|PDE1C_uc003tcr.2_Missense_Mutation_p.D286N|PDE1C_uc003tcs.2_Missense_Mutation_p.D286N	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	286	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			ATAGCTGGATCAGACCTGAAC	0.388													27	42					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	32091189	32091189	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:32091189C>T	uc003tcm.1	-	2	574	c.105G>A	c.(103-105)AGG>AGA	p.R35R	PDE1C_uc003tcn.1_Silent_p.R35R|PDE1C_uc003tco.1_Intron|PDE1C_uc003tcr.2_Silent_p.R35R|PDE1C_uc003tcs.2_Silent_p.R35R	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	35					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TCTTATATTTCCTCCTGTAAG	0.468													10	22					0	0	1	0	0
BMPER	168667	broad.mit.edu	37	7	34014390	34014390	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:34014390C>T	uc011kap.1	+	6	684	c.570C>T	c.(568-570)TCC>TCT	p.S190S		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	190	VWFC 3.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						CCAAGTGTTCCTGCACTGTAA	0.507													38	59					0	0	1	0	0
ADCY1	107	broad.mit.edu	37	7	45725584	45725584	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:45725584G>A	uc003tne.3	+	13	2115	c.2097G>A	c.(2095-2097)TGG>TGA	p.W699*		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	699					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	CTTGGGCCTGGAGCTCCAAGC	0.652													8	17					0	0	1	0	0
C7orf57	136288	broad.mit.edu	37	7	48092454	48092454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:48092454G>A	uc003toh.3	+	7	975	c.763G>A	c.(763-765)GAA>AAA	p.E255K	C7orf57_uc003toi.3_Missense_Mutation_p.E113K	NM_001100159	NP_001093629	Q8NEG2	CG057_HUMAN	hypothetical protein LOC136288	255										ovary(1)	1						ACGAGACCTGGAAGGTCCCCA	0.577													16	23					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48559827	48559827	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:48559827C>T	uc003toq.2	+	53	14013	c.13988C>T	c.(13987-13989)TCG>TTG	p.S4663L	ABCA13_uc010kys.1_Missense_Mutation_p.S1738L|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Missense_Mutation_p.S393L	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4663	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CAACTGGCCTCGCAGGGCACA	0.512													10	16					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48619946	48619946	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:48619946G>A	uc003toq.2	+	56	14506	c.14481G>A	c.(14479-14481)GGG>GGA	p.G4827G	ABCA13_uc010kys.1_Silent_p.G1902G|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Silent_p.G557G	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4827	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GCTTACGCGGGATTCCAAGGC	0.547													6	11					0	0	1	0	0
GRB10	2887	broad.mit.edu	37	7	50671731	50671731	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:50671731G>A	uc003tpi.2	-	14	1539	c.1508C>T	c.(1507-1509)TCC>TTC	p.S503F	GRB10_uc003tph.3_Missense_Mutation_p.S445F|GRB10_uc003tpj.2_Missense_Mutation_p.S457F|GRB10_uc003tpk.2_Missense_Mutation_p.S503F|GRB10_uc010kzb.2_Missense_Mutation_p.S445F|GRB10_uc003tpl.2_Missense_Mutation_p.S497F|GRB10_uc003tpm.2_Missense_Mutation_p.S445F|GRB10_uc003tpn.2_Missense_Mutation_p.S445F	NM_005311	NP_005302	Q13322	GRB10_HUMAN	growth factor receptor-bound protein 10 isoform	503	SH2.				insulin receptor signaling pathway|insulin receptor signaling pathway|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway	cytosol|plasma membrane	insulin receptor binding|insulin receptor binding|SH3/SH2 adaptor activity			lung(3)|ovary(2)|upper_aerodigestive_tract(1)	6	Glioma(55;0.08)|all_neural(89;0.245)					GATCCTGTGGGATTCCTCCCT	0.458									Russell-Silver_syndrome				67	124					0	0	1	0	0
WBSCR17	64409	broad.mit.edu	37	7	71036358	71036358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:71036358G>A	uc003tvy.2	+	6	1051	c.1051G>A	c.(1051-1053)GGA>AGA	p.G351R	WBSCR17_uc003tvz.2_Missense_Mutation_p.G50R	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	351	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				GGATGTATACGGAGGAGAAAA	0.517													36	59					0	0	1	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	73954224	73954224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:73954224C>T	uc003uaq.2	+	14	1937	c.1544C>T	c.(1543-1545)TCT>TTT	p.S515F	GTF2IRD1_uc010lbq.2_Missense_Mutation_p.S547F|GTF2IRD1_uc003uap.2_Missense_Mutation_p.S515F|GTF2IRD1_uc003uar.1_Missense_Mutation_p.S515F	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	515						nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						TCGCCAACCTCTGAGGAAATG	0.557													20	41					0	0	1	0	0
MDH2	4191	broad.mit.edu	37	7	75695710	75695710	+	Silent	SNP	C	T	T	rs146761624	byFrequency	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:75695710C>T	uc003ueo.2	+	9	1085	c.999C>T	c.(997-999)TTC>TTT	p.F333F	MDH2_uc003uep.2_Silent_p.F226F|MDH2_uc011kgh.1_Silent_p.F291F	NM_005918	NP_005909	P40926	MDHM_HUMAN	mitochondrial malate dehydrogenase precursor	333					gluconeogenesis|malate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus|plasma membrane	binding|L-malate dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3					NADH(DB00157)	GGGAAGATTTCGTGAAGACCC	0.493													8	18					0	0	1	0	0
RSBN1L	222194	broad.mit.edu	37	7	77407851	77407851	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:77407851T>C	uc010ldt.1	+	8	1951	c.1907T>C	c.(1906-1908)GTC>GCC	p.V636A	RSBN1L_uc003ugm.2_Missense_Mutation_p.V418A	NM_198467	NP_940869	Q6PCB5	RSBNL_HUMAN	round spermatid basic protein 1-like	636						nucleus				ovary(1)	1						TTTTAGTGTGTCCAATGGGTT	0.333													20	44					0	0	1	0	0
SEMA3E	9723	broad.mit.edu	37	7	82997013	82997013	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:82997013C>T	uc003uhy.1	-	17	2683	c.2217G>A	c.(2215-2217)AGG>AGA	p.R739R		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	739	Arg/Lys-rich (basic).				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				TAAGCTTTTTCCTCTTTCTAT	0.473													39	62					0	0	1	0	0
C7orf63	79846	broad.mit.edu	37	7	89906553	89906553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:89906553G>A	uc010lep.2	+	11	1311	c.1060G>A	c.(1060-1062)GGA>AGA	p.G354R	C7orf63_uc003ukf.2_RNA|C7orf63_uc003ukg.2_Missense_Mutation_p.G29R|C7orf63_uc011khj.1_Missense_Mutation_p.G336R|C7orf63_uc011khk.1_5'Flank	NM_001039706	NP_001034795	A5D8W1	CG063_HUMAN	hypothetical protein LOC79846 isoform 1	354							binding			ovary(1)	1						TTTGGTAAAAGGACTTAAGCT	0.269													3	14					0	0	1	0	0
CDK14	5218	broad.mit.edu	37	7	90585122	90585122	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:90585122C>G	uc003uky.2	+	9	1159	c.937C>G	c.(937-939)CTT>GTT	p.L313V	CDK14_uc003ukz.1_Missense_Mutation_p.L295V|CDK14_uc010les.1_Missense_Mutation_p.L267V|CDK14_uc011khl.1_Missense_Mutation_p.L184V	NM_012395	NP_036527	O94921	CDK14_HUMAN	PFTAIRE protein kinase 1	313	Protein kinase.				cell division|G2/M transition of mitotic cell cycle|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasmic cyclin-dependent protein kinase holoenzyme complex|nucleus|plasma membrane	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			lung(3)|ovary(1)	4						TTCCACCTGCCTTGACATGTG	0.453													23	51					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764918	92764918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:92764918G>A	uc003umh.1	-	5	1583	c.367C>T	c.(367-369)CCC>TCC	p.P123S	SAMD9L_uc003umj.1_Missense_Mutation_p.P123S|SAMD9L_uc003umi.1_Missense_Mutation_p.P123S|SAMD9L_uc010lfb.1_Missense_Mutation_p.P123S|SAMD9L_uc003umk.1_Missense_Mutation_p.P123S|SAMD9L_uc010lfc.1_Missense_Mutation_p.P123S|SAMD9L_uc010lfd.1_Missense_Mutation_p.P123S|SAMD9L_uc011khx.1_Missense_Mutation_p.P114S	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	123										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			ATCTCTCTGGGATCATAATCA	0.313													8	31					0	0	1	0	0
TRRAP	8295	broad.mit.edu	37	7	98506387	98506387	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:98506387C>T	uc003upp.2	+	14	1361	c.1152C>T	c.(1150-1152)CAC>CAT	p.H384H	TRRAP_uc011kis.1_Silent_p.H384H|TRRAP_uc003upr.2_Silent_p.H76H	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	384					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			ACCTCGTGCACCATGTCCGCC	0.662													2	2					0	0	1	0	0
LRCH4	4034	broad.mit.edu	37	7	100175351	100175351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:100175351G>A	uc003uvj.2	-	9	1105	c.1052C>T	c.(1051-1053)CCT>CTT	p.P351L	LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjw.1_5'UTR|LRCH4_uc011kjx.1_RNA	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	351					nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AATCTGCACAGGGTCTCCGTC	0.657													40	90					0	0	1	0	0
TFR2	7036	broad.mit.edu	37	7	100225217	100225217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:100225217C>T	uc003uvv.1	-	15	1791	c.1750G>A	c.(1750-1752)GAG>AAG	p.E584K	TFR2_uc010lhc.1_Missense_Mutation_p.E125K|TFR2_uc003uvu.1_Missense_Mutation_p.E413K	NM_003227	NP_003218	Q9UP52	TFR2_HUMAN	transferrin receptor 2	584	Extracellular (Potential).				cellular iron ion homeostasis|iron ion transport|proteolysis	cytoplasm|integral to plasma membrane	peptidase activity|transferrin receptor activity			ovary(1)|pancreas(1)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					AAGGAGAACTCGACGGCAGGG	0.642													17	28					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100365543	100365543	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:100365543G>A	uc003uwj.2	+	26	5115	c.4950G>A	c.(4948-4950)ACG>ACA	p.T1650T	ZAN_uc003uwk.2_Silent_p.T1650T|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kkd.1_Silent_p.T227T	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1650	Extracellular (Potential).|VWFD 2.				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			TCCTCTACACGAACTTTGGGC	0.602													16	21					0	0	1	0	0
SLC12A9	56996	broad.mit.edu	37	7	100459389	100459389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:100459389C>T	uc003uwp.2	+	12	1709	c.1567C>T	c.(1567-1569)CGG>TGG	p.R523W	SLC12A9_uc003uwq.2_Missense_Mutation_p.R434W|SLC12A9_uc011kki.1_Missense_Mutation_p.R54W|SLC12A9_uc003uwr.2_Missense_Mutation_p.R259W|SLC12A9_uc003uws.2_Missense_Mutation_p.R54W|SLC12A9_uc003uwt.2_Missense_Mutation_p.R259W|SLC12A9_uc003uwv.2_Missense_Mutation_p.R54W	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	523	Extracellular (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					GCTGGACGTCCGGAAGGATCA	0.632													37	77					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100675353	100675353	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:100675353C>A	uc003uxp.1	+	3	709	c.656C>A	c.(655-657)ACA>AAA	p.T219K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	219	Extracellular (Potential).|1.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACTCCATTAACAAGTATGCCT	0.473													77	185					4.05715e-38	4.10793e-38	1	1	0
MUC17	140453	broad.mit.edu	37	7	100681122	100681122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:100681122C>T	uc003uxp.1	+	3	6478	c.6425C>T	c.(6424-6426)TCT>TTT	p.S2142F	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2142	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|34.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTCAGTTCATCTCCTATACCT	0.498													102	181					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117199609	117199609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:117199609C>T	uc003vjd.2	+	11	1616	c.1484C>T	c.(1483-1485)TCC>TTC	p.S495F	CFTR_uc011knq.1_5'UTR|CFTR_uc003vje.1_RNA	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	495	Cytoplasmic (Potential).|ABC transporter 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TCTCAGTTTTCCTGGATTATG	0.383									Cystic_Fibrosis				25	46					0	0	1	0	0
PODXL	5420	broad.mit.edu	37	7	131196076	131196076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:131196076C>T	uc003vqw.3	-	2	475	c.217G>A	c.(217-219)GAA>AAA	p.E73K	PODXL_uc003vqx.3_Missense_Mutation_p.E73K	NM_001018111	NP_001018121	O00592	PODXL_HUMAN	podocalyxin-like isoform 1 precursor	73	Thr-rich.|Extracellular (Potential).				cell adhesion|epithelial tube formation|negative regulation of cell-cell adhesion|positive regulation of cell migration|positive regulation of cell-cell adhesion mediated by integrin|regulation of microvillus assembly	actin cytoskeleton|apical plasma membrane|centrosome|filopodium|integral to plasma membrane|lamellipodium|membrane raft|microvillus membrane|nucleolus|ruffle				breast(2)|pancreas(1)	3	Melanoma(18;0.162)					GCCAAGATTTCGTTGGCCTTG	0.557													28	43					0	0	1	0	0
WDR91	29062	broad.mit.edu	37	7	134890723	134890723	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:134890723G>T	uc003vsp.2	-	5	744	c.682C>A	c.(682-684)CCT>ACT	p.P228T	WDR91_uc010lmq.2_5'UTR|WDR91_uc010lmr.2_RNA	NM_014149	NP_054868	A4D1P6	WDR91_HUMAN	WD repeat domain 91	228										breast(2)|ovary(1)|skin(1)	4						ACATAAGGAGGCAATTTGTGT	0.527													39	91					1.06522e-23	1.07706e-23	1	1	0
CHRM2	1129	broad.mit.edu	37	7	136700756	136700756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:136700756G>A	uc003vtf.1	+	4	1767	c.1144G>A	c.(1144-1146)GAA>AAA	p.E382K	CHRM2_uc003vtg.1_Missense_Mutation_p.E382K|CHRM2_uc003vtj.1_Missense_Mutation_p.E382K|CHRM2_uc003vtk.1_Missense_Mutation_p.E382K|CHRM2_uc003vtl.1_Missense_Mutation_p.E382K|CHRM2_uc003vtm.1_Missense_Mutation_p.E382K|CHRM2_uc003vti.1_Missense_Mutation_p.E382K|CHRM2_uc003vto.1_Missense_Mutation_p.E382K|CHRM2_uc003vtn.1_Missense_Mutation_p.E382K|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	382	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	TCCTTCCCGGGAAAAGAAAGT	0.458													7	13					0	0	1	0	0
PTN	5764	broad.mit.edu	37	7	136938237	136938237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:136938237G>A	uc003vtq.2	-	3	626	c.263C>T	c.(262-264)CCC>CTC	p.P88L	PTN_uc010lmx.2_Missense_Mutation_p.P88L|PTN_uc003vtr.1_Missense_Mutation_p.P88L	NM_002825	NP_002816	P21246	PTN_HUMAN	pleiotrophin	88					nervous system development|positive regulation of cell division|positive regulation of cell proliferation|transmembrane receptor protein tyrosine phosphatase signaling pathway	endoplasmic reticulum|extracellular space	growth factor activity|heparin binding|protein phosphatase inhibitor activity			upper_aerodigestive_tract(1)|pancreas(1)	2						CCAGTTGCAGGGGATCTTACA	0.488													29	68					0	0	1	0	0
CREB3L2	64764	broad.mit.edu	37	7	137600659	137600659	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:137600659G>A	uc003vtw.2	-	3	814	c.419C>T	c.(418-420)CCG>CTG	p.P140L	CREB3L2_uc003vtx.1_Missense_Mutation_p.P140L|CREB3L2_uc003vty.3_Missense_Mutation_p.P140L|CREB3L2_uc003vtv.2_Missense_Mutation_p.P77L	NM_194071	NP_919047	Q70SY1	CR3L2_HUMAN	cAMP responsive element binding protein 3-like	140	Cytoplasmic (Potential).				chondrocyte differentiation|positive regulation of transcription, DNA-dependent|response to endoplasmic reticulum stress|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	cAMP response element binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		FUS/CREB3L2(158)	soft_tissue(158)|upper_aerodigestive_tract(1)|ovary(1)	160						AGTGACAGACGGAACGAGTCC	0.498			T	FUS	fibromyxoid sarcoma								19	36					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141755423	141755423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:141755423C>T	uc003vwy.2	+	28	3434	c.3380C>T	c.(3379-3381)CCC>CTC	p.P1127L		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1127	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ACCCGCCTTCCCTCCAAGTAC	0.507													35	54					0	0	1	0	0
TRYX3	136541	broad.mit.edu	37	7	141955399	141955399	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:141955399C>T	uc003vxb.2	-	2	455	c.135G>A	c.(133-135)CTG>CTA	p.L45L	TRYX3_uc003vxc.3_Silent_p.L45L	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	45	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					GCGGGTGGATCAGGACTCCAG	0.498													25	41					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	142001090	142001090	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:142001090A>T	uc011kro.1	+	2	227	c.182A>T	c.(181-183)AAA>ATA	p.K61I						SubName: Full=V_segment translation product; Flags: Fragment;																		TTGGGGCAGAAAGTCGAGTTT	0.398													5	10					0	0	1	0	0
PRSS1	5644	broad.mit.edu	37	7	142457338	142457338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:142457338G>A	uc003wak.2	+	1	20	c.3G>A	c.(1-3)ATG>ATA	p.M1I	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|PRSS1_uc011ksm.1_Missense_Mutation_p.M1I|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	1					digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			CTACCACCATGAATCCACTCC	0.577									Hereditary_Pancreatitis				40	91					0	0	1	0	0
PRSS1	5644	broad.mit.edu	37	7	142457342	142457342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:142457342C>T	uc003wak.2	+	1	24	c.7C>T	c.(7-9)CCA>TCA	p.P3S	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|PRSS1_uc011ksm.1_Missense_Mutation_p.P3S|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	3					digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			CACCATGAATCCACTCCTGAT	0.572									Hereditary_Pancreatitis				42	90					0	0	1	0	0
PRSS1	5644	broad.mit.edu	37	7	142459672	142459672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:142459672G>A	uc003wak.2	+	3	265	c.248G>A	c.(247-249)GGG>GAG	p.G83E	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_3'UTR|PRSS1_uc003wam.2_Missense_Mutation_p.G23E	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	83	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			GTCCTGGAGGGGAATGAGCAG	0.542									Hereditary_Pancreatitis				59	156					0	0	1	0	0
EPHB6	2051	broad.mit.edu	37	7	142564271	142564271	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:142564271C>G	uc011kst.1	+	10	2282	c.1495C>G	c.(1495-1497)CGG>GGG	p.R499G	EPHB6_uc011ksu.1_Missense_Mutation_p.R499G|EPHB6_uc003wbs.2_Missense_Mutation_p.R207G|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_Missense_Mutation_p.R207G|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	499	Fibronectin type-III 2.|Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					CCAGGTGAGCCGGGCATCCAA	0.582													34	63					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142609900	142609900	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:142609900G>A	uc003wby.1	-	13	1800	c.1536C>T	c.(1534-1536)TTC>TTT	p.F512F		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	512	Helical; (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CCTCTGTCTGGAAAATGATAT	0.463													23	52					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142625962	142625962	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:142625962C>T	uc003wby.1	-	6	851	c.587_splice	c.e6-1	p.G196_splice	TRPV5_uc003wbz.2_Splice_Site_p.G196_splice	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,						protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					ACTGTGTTTCCTGGGGAGGAC	0.552													35	53					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142651043	142651043	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:142651043C>T	uc003wcb.2	-	9	1135	c.925G>A	c.(925-927)GAA>AAA	p.E309K		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	309	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GGGGCCATTTCCTTAGAGGAG	0.537													15	26					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143018507	143018507	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:143018507C>T	uc003wcr.1	+	4	570	c.483C>T	c.(481-483)TTC>TTT	p.F161F	CLCN1_uc011ktc.1_5'UTR|CLCN1_uc003wcs.1_RNA|CLCN1_uc010lox.1_RNA|CLCN1_uc010loy.1_Silent_p.F9F	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	161	Helical; (By similarity).		F -> V (in THD and MCR).		muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CTCTGCAGTTCCTGGTCTGGG	0.592													23	52					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143021572	143021572	+	Silent	SNP	G	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:143021572G>T	uc003wcr.1	+	7	927	c.840G>T	c.(838-840)GGG>GGT	p.G280G	CLCN1_uc011ktc.1_5'UTR|CLCN1_uc003wcs.1_RNA|CLCN1_uc010lox.1_RNA|CLCN1_uc010loy.1_Intron	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	280					muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					GTTGTTTTGGGACACCACTTG	0.527													20	40					7.45023e-12	7.48105e-12	1	1	0
CNTNAP2	26047	broad.mit.edu	37	7	146825844	146825844	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:146825844C>T	uc003weu.1	+	7	1515	c.999C>T	c.(997-999)TTC>TTT	p.F333F		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	333	Laminin G-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GAAAGAATTTCAAAGGCTGCA	0.413										HNSCC(39;0.1)			26	59					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147336210	147336210	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:147336210G>A	uc003weu.1	+	13	2426	c.1910G>A	c.(1909-1911)TGG>TAG	p.W637*		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	637	Extracellular (Potential).|Fibrinogen C-terminal.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GACAAAGTGTGGACCATAGTG	0.463										HNSCC(39;0.1)			22	54					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149480200	149480200	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:149480200G>A	uc010lpk.2	+	16	2082	c.2082G>A	c.(2080-2082)CAG>CAA	p.Q694Q	SSPO_uc010lpl.1_Silent_p.Q29Q	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	694	VWFD 2.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCCAGGTGCAGGGTCTGTGTG	0.597													4	6					0	0	1	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217858	150217858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:150217858G>A	uc003whk.2	+	2	926	c.796G>A	c.(796-798)GAA>AAA	p.E266K		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	266							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		aaatataaGGGAAGAAGCTGA	0.239													11	25					0	0	1	0	0
TMEM176B	28959	broad.mit.edu	37	7	150488694	150488694	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:150488694C>T	uc003wht.3	-	7	904	c.738G>A	c.(736-738)GAG>GAA	p.E246E	TMEM176B_uc003whu.3_Silent_p.E246E|TMEM176B_uc003whv.3_Silent_p.E209E|TMEM176B_uc003whw.3_Silent_p.E246E	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	246					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTAGCCTCTTCTCTGATCCTT	0.478													14	20					0	0	1	0	0
TMEM176B	28959	broad.mit.edu	37	7	150490274	150490274	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:150490274C>G	uc003wht.3	-	5	668	c.502G>C	c.(502-504)GAC>CAC	p.D168H	TMEM176B_uc003whu.3_Missense_Mutation_p.D168H|TMEM176B_uc003whv.3_Missense_Mutation_p.D131H|TMEM176B_uc003whw.3_Missense_Mutation_p.D168H	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	168					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAGACAGGGTCTGAGCGATCA	0.502													31	46					0	0	1	0	0
ABP1	26	broad.mit.edu	37	7	150556125	150556125	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:150556125C>T	uc003why.1	+	4	6063	c.1845C>T	c.(1843-1845)ATC>ATT	p.I615I	ABP1_uc003whz.1_Silent_p.I615I|ABP1_uc003wia.1_Silent_p.I615I	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	615					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	AGCAGGCCATCACCTGGGCAA	0.542													5	9					0	0	1	0	0
ABCB8	11194	broad.mit.edu	37	7	150737981	150737981	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:150737981C>T	uc003wil.3	+	13	1599	c.1506C>T	c.(1504-1506)ATC>ATT	p.I502I	ABCB8_uc010lpw.1_Missense_Mutation_p.R378C|ABCB8_uc010lpx.2_Silent_p.I485I|ABCB8_uc011kvd.1_Silent_p.I397I|ABCB8_uc003wim.3_Silent_p.I280I|ABCB8_uc003wik.3_Silent_p.I485I	NM_007188	NP_009119	Q9NUT2	ABCB8_HUMAN	ATP-binding cassette, sub-family B, member 8	502	ABC transporter.					ATP-binding cassette (ABC) transporter complex|integral to membrane|membrane fraction|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTGGCAAGATCGTGGCCCTCG	0.657													3	8					0	0	1	0	0
AGAP3	116988	broad.mit.edu	37	7	150814531	150814531	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:150814531C>T	uc003wjg.1	+	4	555	c.552C>T	c.(550-552)CCC>CCT	p.P184P	AGAP3_uc003wje.1_5'UTR|AGAP3_uc003wjf.1_Silent_p.P184P|AGAP3_uc010lpy.1_Silent_p.P184P|AGAP3_uc003wjh.1_Silent_p.P364P	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	148	Small GTPase-like.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						AAGGAGGCCCCCCTGAGCTCC	0.612													34	58					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151859299	151859299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:151859299G>A	uc003wla.2	-	43	11582	c.11363C>T	c.(11362-11364)TCT>TTT	p.S3788F	MLL3_uc003wkz.2_Missense_Mutation_p.S2849F|MLL3_uc003wky.2_Missense_Mutation_p.S1297F	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	3788					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ATTCAAAAGAGAAGATGACTT	0.433			N		medulloblastoma								10	9					0	0	1	0	0
HTR5A	3361	broad.mit.edu	37	7	154876092	154876092	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:154876092C>T	uc003wlu.1	+	2	1033	c.969C>T	c.(967-969)TTC>TTT	p.F323F		NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	323	Helical; Name=7; (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		AAAGCATCTTCCTGTGGCTTG	0.507													39	90					0	0	1	0	0
VIPR2	7434	broad.mit.edu	37	7	158902549	158902549	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:158902549G>A	uc003woh.2	-	3	399	c.213C>T	c.(211-213)GTC>GTT	p.V71V	VIPR2_uc010lqx.2_RNA|VIPR2_uc010lqy.2_RNA	NM_003382	NP_003373	P41587	VIPR2_HUMAN	vasoactive intestinal peptide receptor 2	71	Extracellular (Potential).				cell-cell signaling	integral to plasma membrane				lung(1)|central_nervous_system(1)	2	Ovarian(565;0.152)	all_cancers(7;1.13e-11)|all_epithelial(9;0.000545)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)|STAD - Stomach adenocarcinoma(7;0.18)		AGGGCACCGTGACGGTCTCTC	0.572													33	59					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2807826	2807826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:2807826G>A	uc011kwk.1	-	67	10634	c.10244C>T	c.(10243-10245)GCT>GTT	p.A3415V	CSMD1_uc011kwj.1_Missense_Mutation_p.A2729V|CSMD1_uc010lrg.2_Missense_Mutation_p.A1306V	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3415	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AATTTGAAAAGCTTTCAGGAG	0.398													33	83					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2813184	2813184	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:2813184G>A	uc011kwk.1	-	64	10314	c.9924C>T	c.(9922-9924)TTC>TTT	p.F3308F	CSMD1_uc011kwj.1_Silent_p.F2637F|CSMD1_uc010lrg.2_Silent_p.F1199F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3308	Sushi 28.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CCCCTGCGAGGAAAAAGCCTG	0.507													25	61					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2815229	2815229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:2815229G>A	uc011kwk.1	-	63	10196	c.9806C>T	c.(9805-9807)ACC>ATC	p.T3269I	CSMD1_uc011kwj.1_Missense_Mutation_p.T2598I|CSMD1_uc010lrg.2_Missense_Mutation_p.T1160I	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3269	Extracellular (Potential).|Sushi 27.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TATACATTCGGTCTGTATCCC	0.433													8	7					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2910139	2910139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:2910139C>T	uc011kwk.1	-	50	7898	c.7508G>A	c.(7507-7509)GGA>GAA	p.G2503E	CSMD1_uc011kwj.1_Missense_Mutation_p.G1832E|CSMD1_uc010lrg.2_Missense_Mutation_p.G571E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2503	Extracellular (Potential).|Sushi 15.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGAACCGTTTCCTGGGGATTC	0.418													7	14					0	0	1	0	0
ANGPT2	285	broad.mit.edu	37	8	6378862	6378862	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:6378862C>T	uc003wqj.3	-	4	965	c.636G>A	c.(634-636)GAG>GAA	p.E212E	MCPH1_uc003wqi.2_Intron|ANGPT2_uc003wqk.3_Silent_p.E212E|ANGPT2_uc010lri.2_Silent_p.E160E|ANGPT2_uc003wql.3_Silent_p.E212E	NM_001147	NP_001138	O15123	ANGP2_HUMAN	angiopoietin 2 isoform a precursor	212	Potential.				angiogenesis|blood coagulation|leukocyte migration|negative regulation of blood vessel endothelial cell migration|negative regulation of positive chemotaxis|Tie receptor signaling pathway	extracellular space	metal ion binding|receptor tyrosine kinase binding			upper_aerodigestive_tract(1)	1		Hepatocellular(245;0.0663)		Colorectal(4;0.0142)|READ - Rectum adenocarcinoma(4;0.19)|COAD - Colon adenocarcinoma(4;0.226)		GCTGATCTTTCTCTTCTTTTA	0.353													12	56					0	0	1	0	0
PCM1	5108	broad.mit.edu	37	8	17867105	17867105	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:17867105A>G	uc003wyi.3	+	31	5434	c.5012A>G	c.(5011-5013)GAT>GGT	p.D1671G	PCM1_uc011kyh.1_Missense_Mutation_p.D1663G|PCM1_uc003wyj.3_Missense_Mutation_p.D1617G|PCM1_uc011kyi.1_Missense_Mutation_p.D470G|PCM1_uc011kyj.1_Missense_Mutation_p.D427G|PCM1_uc003wyk.3_Missense_Mutation_p.D353G|PCM1_uc011kyk.1_Missense_Mutation_p.D287G	NM_006197	NP_006188	Q15154	PCM1_HUMAN	pericentriolar material 1	1671	Interaction with HAP1.				centrosome organization|cilium assembly|G2/M transition of mitotic cell cycle|interkinetic nuclear migration|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome	centriolar satellite|cytosol|nuclear membrane|pericentriolar material	identical protein binding		PCM1/JAK2(30)	haematopoietic_and_lymphoid_tissue(30)|breast(4)|ovary(2)	36				Colorectal(111;0.0789)		TGTGGAGAAGATCTTCTTGTA	0.308			T	RET|JAK2	papillary thyroid|CML|MPD								2	9					0	0	1	0	0
PSD3	23362	broad.mit.edu	37	8	18658818	18658818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:18658818C>T	uc003wza.2	-	7	2088	c.1985G>A	c.(1984-1986)AGA>AAA	p.R662K	PSD3_uc003wyy.2_Missense_Mutation_p.R128K|PSD3_uc003wyz.2_5'UTR	NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	662	SEC7.				regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		ATAAAAATATCTATTGGAGAA	0.289													51	32					0	0	1	0	0
LOXL2	4017	broad.mit.edu	37	8	23177452	23177452	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:23177452C>T	uc003xdh.1	-	8	1755	c.1416G>A	c.(1414-1416)GAG>GAA	p.E472E	LOXL2_uc010lty.1_Silent_p.E11E	NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	472	SRCR 4.				aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		CCACCATGGCCTCCACGATGC	0.662													29	61					0	0	1	0	0
STC1	6781	broad.mit.edu	37	8	23709835	23709835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:23709835C>T	uc003xdw.1	-	2	465	c.181G>A	c.(181-183)GAA>AAA	p.E61K		NM_003155	NP_003146	P52823	STC1_HUMAN	stanniocalcin 1 precursor	61					cell surface receptor linked signaling pathway|cell-cell signaling|cellular calcium ion homeostasis		hormone activity			skin(3)|upper_aerodigestive_tract(1)	4		Prostate(55;0.055)|Breast(100;0.116)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		GTGGAGTTTTCCAGGCATGCA	0.473													51	51					0	0	1	0	0
ADAM28	10863	broad.mit.edu	37	8	24193032	24193032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:24193032C>T	uc003xdy.2	+	14	1528	c.1445C>T	c.(1444-1446)TCT>TTT	p.S482F	ADAM28_uc003xdx.2_Missense_Mutation_p.S482F|ADAM28_uc011kzz.1_Missense_Mutation_p.S249F|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.S169F	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	482	Disintegrin.|Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		AATGGTAAATCTGGTAATTGT	0.473													23	31					0	0	1	0	0
ADAM7	8756	broad.mit.edu	37	8	24346730	24346730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:24346730G>A	uc003xeb.2	+	12	1263	c.1150G>A	c.(1150-1152)GAT>AAT	p.D384N	ADAM7_uc003xec.2_Missense_Mutation_p.D156N	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	384	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		GTACTTGAAGGATTATAAGCC	0.353													39	38					0	0	1	0	0
PTK2B	2185	broad.mit.edu	37	8	27288404	27288404	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:27288404C>T	uc003xfn.1	+	13	1489	c.681C>T	c.(679-681)TTC>TTT	p.F227F	PTK2B_uc003xfo.1_Silent_p.F227F|PTK2B_uc003xfp.1_Silent_p.F227F|PTK2B_uc003xfq.1_Silent_p.F227F|PTK2B_uc010luq.1_5'UTR|PTK2B_uc003xfr.1_5'Flank	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	227	FERM.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		CCAAACAGTTCCGGAAGATGA	0.602													62	55					0	0	1	0	0
C8orf80	389643	broad.mit.edu	37	8	27886902	27886902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:27886902C>T	uc003xgm.3	-	17	2178	c.2035G>A	c.(2035-2037)GGC>AGC	p.G679S		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	679						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		GCTTTTTTGCCCGTGATCTGA	0.473													5	10					0	0	1	0	0
WRN	7486	broad.mit.edu	37	8	30973872	30973872	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:30973872C>T	uc003xio.3	+	20	3064	c.2276C>T	c.(2275-2277)TCC>TTC	p.S759F	WRN_uc010lvk.2_Missense_Mutation_p.S226F	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	759	Helicase C-terminal.				base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		TTCTTTAGTTCCCACTGGGAA	0.348			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				11	29					0	0	1	0	0
FUT10	84750	broad.mit.edu	37	8	33230221	33230221	+	Silent	SNP	A	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:33230221A>G	uc003xje.2	-	5	1670	c.1314T>C	c.(1312-1314)TCT>TCC	p.S438S	FUT10_uc003xjc.2_Silent_p.S445S|FUT10_uc003xjd.2_Silent_p.S410S|FUT10_uc011lbi.1_Silent_p.S488S	NM_032664	NP_116053	Q6P4F1	FUT10_HUMAN	fucosyltransferase 10	438	Lumenal (Potential).				embryo development|fertilization|hemopoiesis|L-fucose catabolic process|nervous system development|protein folding|protein glycosylation|protein targeting|wound healing	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			ovary(1)|pancreas(1)	2				KIRC - Kidney renal clear cell carcinoma(67;0.129)|Kidney(114;0.154)		TCTCTCGCAAAGAGCTCAAAG	0.488													30	22					0	0	1	0	0
KCNU1	157855	broad.mit.edu	37	8	36768464	36768464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:36768464C>T	uc010lvw.2	+	22	2435	c.2348C>T	c.(2347-2349)TCT>TTT	p.S783F	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	783	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		GCACTTTATTCTGGAGACCTC	0.517													30	86					0	0	1	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37720449	37720449	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:37720449G>A	uc003xkm.1	-	6	3860	c.3816C>T	c.(3814-3816)ATC>ATT	p.I1272I	RAB11FIP1_uc010lvz.1_Silent_p.I486I|RAB11FIP1_uc003xkn.1_Silent_p.I638I|RAB11FIP1_uc003xkl.1_Silent_p.I601I	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	1272	Necessary for interaction with RAB4A and RAB11A, subcellular location and endosomal recycling.|FIP-RBD.				protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			CCTGAGTCGGGATGCGGAGGA	0.483													61	61					0	0	1	0	0
LETM2	137994	broad.mit.edu	37	8	38261941	38261941	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:38261941C>T	uc003xlm.1	+	8	1165	c.994C>T	c.(994-996)CCT>TCT	p.P332S	LETM2_uc011lbn.1_Missense_Mutation_p.P176S|LETM2_uc003xll.1_Missense_Mutation_p.P284S|LETM2_uc003xln.1_Missense_Mutation_p.P176S|LETM2_uc003xlo.1_Missense_Mutation_p.P176S	NM_144652	NP_653253	Q2VYF4	LETM2_HUMAN	leucine zipper-EF-hand containing transmembrane	379	LETM1.|Mitochondrial matrix (Potential).					integral to membrane|mitochondrial inner membrane					0	all_cancers(2;6.77e-47)|all_epithelial(2;1.01e-50)|all_lung(3;1.25e-23)|Lung NSC(2;2.76e-23)|Colorectal(12;0.000442)|Esophageal squamous(3;0.00202)	all_lung(54;0.0657)|Hepatocellular(245;0.152)|Lung NSC(58;0.175)	Epithelial(3;1.17e-42)|all cancers(3;5.44e-38)|BRCA - Breast invasive adenocarcinoma(5;5.44e-27)|LUSC - Lung squamous cell carcinoma(2;7.12e-25)|Lung(2;4.49e-22)|COAD - Colon adenocarcinoma(9;0.114)			GGAGAACGTCCCTCCTTCCCT	0.552													33	84					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39495113	39495113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:39495113G>A	uc003xni.2	+	9	718	c.718G>A	c.(718-720)GAA>AAA	p.E240K	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.E216K	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	240	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			GTGGTCAAATGAAAACCAGAT	0.358													9	24					0	0	1	0	0
CHRNB3	1142	broad.mit.edu	37	8	42587418	42587418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:42587418G>A	uc003xpi.1	+	5	1096	c.968G>A	c.(967-969)AGA>AAA	p.R323K		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	323	Cytoplasmic (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GTTCACCACAGATCTTCTTCC	0.448													98	100					0	0	1	0	0
ST18	9705	broad.mit.edu	37	8	53084653	53084653	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:53084653C>T	uc003xqz.2	-	5	924	c.768G>A	c.(766-768)AGG>AGA	p.R256R	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Silent_p.R221R|ST18_uc011lds.1_Silent_p.R161R|ST18_uc003xra.2_Silent_p.R256R|ST18_uc003xrb.2_Silent_p.R256R	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	256						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				GCGGGTCTTTCCTTTCTGTTT	0.453													25	89					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55534016	55534016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:55534016C>T	uc003xsd.1	+	2	638	c.490C>T	c.(490-492)CCG>TCG	p.P164S	RP1_uc011ldy.1_Missense_Mutation_p.P164S	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	164	Doublecortin 2.				axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GAATGGCGACCCGAAGACGAG	0.657													66	75					0	0	1	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228854	57228854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:57228854G>A	uc003xsy.1	-	2	691	c.53C>T	c.(52-54)TCA>TTA	p.S18L	SDR16C5_uc010lyk.1_Missense_Mutation_p.S18L|SDR16C5_uc010lyl.1_Missense_Mutation_p.S18L	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	18	Helical; (Potential).				detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						ACTAAACAGTGATTTTCCTAA	0.418													41	46					0	0	1	0	0
PENK	5179	broad.mit.edu	37	8	57354177	57354177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:57354177G>A	uc003xsz.2	-	2	539	c.458C>T	c.(457-459)TCC>TTC	p.S153F	PENK_uc003xta.3_Missense_Mutation_p.S153F	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	153					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			CAGGTCTGAGGAATTGGCCAG	0.527													30	94					0	0	1	0	0
TRIM55	84675	broad.mit.edu	37	8	67066484	67066484	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:67066484G>A	uc003xvv.2	+	9	1665	c.1439G>A	c.(1438-1440)CGG>CAG	p.R480Q	TRIM55_uc003xvu.2_Missense_Mutation_p.R480Q|TRIM55_uc003xvw.2_Intron|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	480						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			TCGAATGTACGGAAGGCAGAA	0.567													22	45					0	0	1	0	0
C8orf45	157777	broad.mit.edu	37	8	67803225	67803225	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:67803225C>T	uc003xwz.3	+	10	1370	c.1199C>T	c.(1198-1200)GCT>GTT	p.A400V	C8orf45_uc011lev.1_Missense_Mutation_p.A400V|C8orf45_uc011lew.1_Missense_Mutation_p.A331V|C8orf45_uc011lex.1_Missense_Mutation_p.A158V|C8orf45_uc003xwy.3_Missense_Mutation_p.A400V	NM_173518	NP_775789	Q4G0Z9	CH045_HUMAN	minichromosome maintenance complex	400					DNA replication		ATP binding|DNA binding			ovary(1)	1	Breast(64;0.186)		Epithelial(68;0.00384)|OV - Ovarian serous cystadenocarcinoma(28;0.00913)|all cancers(69;0.0175)|BRCA - Breast invasive adenocarcinoma(89;0.206)			GCTGGCAGTGCTTTGCTAGCT	0.398													35	73					0	0	1	0	0
TRPA1	8989	broad.mit.edu	37	8	72952008	72952008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:72952008C>T	uc003xza.2	-	18	2261	c.2086G>A	c.(2086-2088)GAG>AAG	p.E696K	uc011lff.1_Intron|uc003xyy.2_Intron	NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	696	Cytoplasmic (Potential).					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	TTGAGAAGCTCTATGCGGTTA	0.299													30	35					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87591092	87591092	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:87591092C>T	uc003ydx.2	-	17	1975	c.1929_splice	c.e17-1	p.R643_splice	CNGB3_uc010maj.2_Splice_Site_p.R500_splice	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3						signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						TAAAAGCACTCTGTGGGTAAG	0.423													14	39					0	0	1	0	0
CNBD1	168975	broad.mit.edu	37	8	87917311	87917311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:87917311G>A	uc003ydy.2	+	3	209	c.161G>A	c.(160-162)CGG>CAG	p.R54Q		NM_173538	NP_775809	Q8NA66	CNBD1_HUMAN	cyclic nucleotide binding domain containing 1	54										ovary(3)	3						TTTTTAAGCCGGAGTATGAGC	0.323													8	9					0	0	1	0	0
CDH17	1015	broad.mit.edu	37	8	95164179	95164179	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:95164179G>A	uc003ygh.2	-	13	1838	c.1713C>T	c.(1711-1713)TTC>TTT	p.F571F	CDH17_uc011lgo.1_Silent_p.F357F|CDH17_uc011lgp.1_Silent_p.F571F	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	571	Cadherin 6.|Extracellular (Potential).					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			CTTTCGCTTGGAATACGTGTT	0.448													50	45					0	0	1	0	0
VPS13B	157680	broad.mit.edu	37	8	100515155	100515155	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:100515155C>T	uc003yiv.2	+	27	4245	c.4134C>T	c.(4132-4134)TTC>TTT	p.F1378F	VPS13B_uc003yiw.2_Silent_p.F1378F|VPS13B_uc003yiu.1_Silent_p.F1378F|VPS13B_uc003yix.1_Silent_p.F848F	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1378					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TAGAGAGTTTCAATATTGATC	0.294													85	64					0	0	1	0	0
RIMS2	9699	broad.mit.edu	37	8	105261734	105261734	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:105261734G>A	uc003yls.2	+	26	3904	c.3663G>A	c.(3661-3663)ATG>ATA	p.M1221I	RIMS2_uc003ylp.2_Missense_Mutation_p.M1203I|RIMS2_uc003ylw.2_Missense_Mutation_p.M1210I|RIMS2_uc003ylq.2_Missense_Mutation_p.M1017I|RIMS2_uc003ylr.2_Missense_Mutation_p.M1042I	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1265	C2 2.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			AGGTAGGAATGATGGACAAAA	0.413										HNSCC(12;0.0054)			24	32					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815664	106815664	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:106815664G>A	uc003ymd.2	+	8	3377	c.3354G>A	c.(3352-3354)GGG>GGA	p.G1118G	ZFPM2_uc011lhs.1_Silent_p.G849G	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	1118					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CAACCAGTGGGAAATATTGCC	0.428													17	17					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110504139	110504139	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:110504139G>A	uc003yne.2	+	62	10256	c.10152G>A	c.(10150-10152)GGG>GGA	p.G3384G		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3384	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GAGTCCGAGGGAATTTGATTG	0.383										HNSCC(38;0.096)			7	16					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113988269	113988269	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:113988269G>A	uc003ynu.2	-	7	1298	c.1139C>T	c.(1138-1140)TCC>TTC	p.S380F	CSMD3_uc003ynt.2_Missense_Mutation_p.S340F|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	380	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TGTAACACTGGATACAGTAAC	0.498										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			45	33					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121237401	121237401	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:121237401C>T	uc003yox.2	+	15	2077	c.1812C>T	c.(1810-1812)TTC>TTT	p.F604F	COL14A1_uc003yoy.2_Silent_p.F282F	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	604	Fibronectin type-III 4.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TTGCTATTTTCTCCATCTATG	0.398													11	56					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121243857	121243857	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:121243857G>A	uc003yox.2	+	19	2614	c.2349G>A	c.(2347-2349)ACG>ACA	p.T783T	COL14A1_uc003yoy.2_Silent_p.T461T	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	783	Fibronectin type-III 6.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TCATAGGAACGGTCTGTATAA	0.448													19	14					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	125082829	125082829	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:125082829G>A	uc003yqw.2	+	30	4162	c.3956G>A	c.(3955-3957)GGA>GAA	p.G1319E	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1319	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CGAGTCATAGGAAAATTTAAG	0.408													26	87					0	0	1	0	0
MTSS1	9788	broad.mit.edu	37	8	125570014	125570014	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:125570014G>A	uc003yrk.2	-	11	1672	c.1138C>T	c.(1138-1140)CCT>TCT	p.P380S	NDUFB9_uc011lim.1_Intron|MTSS1_uc003yrh.2_5'Flank|MTSS1_uc011lin.1_Missense_Mutation_p.P154S|MTSS1_uc011lio.1_Missense_Mutation_p.P270S|MTSS1_uc003yri.2_Intron|MTSS1_uc003yrj.2_Intron|MTSS1_uc003yrl.2_Missense_Mutation_p.P384S	NM_014751	NP_055566	O43312	MTSS1_HUMAN	metastasis suppressor 1	380					actin cytoskeleton organization|cell adhesion|cellular component movement|filopodium assembly|transmembrane receptor protein tyrosine kinase signaling pathway	actin cytoskeleton|endocytic vesicle|ruffle	actin monomer binding|cytoskeletal adaptor activity|receptor binding|SH3 domain binding			ovary(1)	1	Ovarian(258;0.00438)|all_neural(195;0.00459)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			GTGACCCGAGGGAGCAGGCGG	0.562													3	14					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131792714	131792714	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:131792714G>A	uc003ytd.3	-	18	3934	c.3678C>T	c.(3676-3678)AAC>AAT	p.N1226N	ADCY8_uc010mds.2_Silent_p.N1095N	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1226	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AAGTCCGCCGGTTGTAATGAC	0.498										HNSCC(32;0.087)			25	97					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133141970	133141970	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:133141970G>A	uc003ytj.2	-	15	2383	c.2158C>T	c.(2158-2160)CTG>TTG	p.L720L	KCNQ3_uc010mdt.2_Silent_p.L708L	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	720					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CCTCGGGGCAGGTTCACAGGG	0.562													29	30					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139856336	139856336	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:139856336C>T	uc003yvd.2	-	4	1171	c.724G>A	c.(724-726)GAA>AAA	p.E242K		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	242	TSP N-terminal.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CCTGTGATTTCCTTGGTTCCT	0.478										HNSCC(7;0.00092)			114	115					0	0	1	0	0
EIF2C2	27161	broad.mit.edu	37	8	141583025	141583025	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:141583025G>A	uc003yvn.2	-	3	262	c.222C>T	c.(220-222)ATC>ATT	p.I74I	EIF2C2_uc010men.2_5'UTR|EIF2C2_uc010meo.2_Silent_p.I74I	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	74					mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			TGTGTTCCACGATTTCCCTGA	0.408													42	47					0	0	1	0	0
SLC45A4	57210	broad.mit.edu	37	8	142222460	142222461	+	Silent	DNP	GG	AA	AA			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:142222460_142222461GG>AA	uc003ywd.1	-	7	2291_2292	c.1983_1984CC>TT	c.(1981-1986)TTCCTG>TTTTTG	p.661_662FL>FL	SLC45A4_uc003ywc.1_Silent_p.661_662FL>FL|SLC45A4_uc010meq.1_Silent_p.659_660FL>FL	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	712_713	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			TAGATCACCAGGAATGTGGCCG	0.644													5	27					0	0	1	0	0
CYP11B2	1585	broad.mit.edu	37	8	143994858	143994858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:143994858G>A	uc003yxk.1	-	6	967	c.964C>T	c.(964-966)CCC>TCC	p.P322S		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	322					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	ATCAGCAAGGGAAACGCTGTC	0.632									Familial_Hyperaldosteronism_type_I				25	76					0	0	1	0	0
ZNF623	9831	broad.mit.edu	37	8	144733037	144733037	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:144733037C>T	uc003yzd.2	+	1	1084	c.995C>T	c.(994-996)TCA>TTA	p.S332L	ZNF623_uc011lkp.1_Missense_Mutation_p.S292L|ZNF623_uc003yzc.2_Missense_Mutation_p.S292L	NM_014789	NP_055604	O75123	ZN623_HUMAN	zinc finger protein 623 isoform 1	332	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;5.28e-40)|all cancers(56;5.23e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			ATTCGGAGTTCAAAGCTCATT	0.493													42	57					0	0	1	0	0
SCRIB	23513	broad.mit.edu	37	8	144874250	144874250	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:144874250G>A	uc003yzp.1	-	33	4575	c.4568C>T	c.(4567-4569)TCC>TTC	p.S1523F	SCRIB_uc003yzn.1_Missense_Mutation_p.S256F|SCRIB_uc003yzo.1_Missense_Mutation_p.S1523F	NM_015356	NP_056171	Q14160	SCRIB_HUMAN	scribble isoform b	1523					activation of Rac GTPase activity|apoptosis involved in morphogenesis|cell migration|cell proliferation|cell-cell adhesion|establishment of apical/basal cell polarity|interspecies interaction between organisms|mammary gland duct morphogenesis|negative regulation of mitotic cell cycle|positive chemotaxis|positive regulation of apoptosis|positive regulation of receptor recycling|protein localization to adherens junction	cell-cell adherens junction|Scrib-APC-beta-catenin complex	protein binding			urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)|pancreas(1)	5	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;1.12e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			GCCTTCCTGGGACCTGCTGAG	0.687													4	19					0	0	1	0	0
FOXH1	8928	broad.mit.edu	37	8	145700198	145700198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr8:145700198C>T	uc003zdc.2	-	3	1100	c.521G>A	c.(520-522)GGA>GAA	p.G174E		NM_003923	NP_003914	O75593	FOXH1_HUMAN	forkhead box H1	174					axial mesoderm development|blood vessel development|cell migration involved in gastrulation|embryonic heart tube anterior/posterior pattern formation|floor plate formation|heart looping|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|specification of organ position|transforming growth factor beta receptor signaling pathway	activin responsive factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|R-SMAD binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.76e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			CCCGGACCCTCCTAGCAGGGA	0.711													17	15					0	0	1	0	0
SMARCA2	6595	broad.mit.edu	37	9	2084115	2084115	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:2084115C>T	uc003zhc.2	+	17	2544	c.2445C>T	c.(2443-2445)GTC>GTT	p.V815V	SMARCA2_uc003zhd.2_Silent_p.V815V|SMARCA2_uc010mha.2_Silent_p.V806V	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	815	Helicase ATP-binding.				chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		GCTCCCTTGTCCCCCAGCTAC	0.373													10	10					0	0	1	0	0
IL33	90865	broad.mit.edu	37	9	6252883	6252883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:6252883G>A	uc003zjt.2	+	5	418	c.361G>A	c.(361-363)GAG>AAG	p.E121K	IL33_uc011lmg.1_Intron|IL33_uc011lmh.1_Intron|IL33_uc003zju.1_Missense_Mutation_p.E121K	NM_033439	NP_254274	O95760	IL33_HUMAN	interleukin 33 precursor	121					positive regulation of chemokine secretion|positive regulation of inflammatory response|positive regulation of macrophage activation|positive regulation of transcription from RNA polymerase II promoter	extracellular space	cytokine activity				0		Acute lymphoblastic leukemia(23;0.158)|Prostate(43;0.167)		GBM - Glioblastoma multiforme(50;0.0161)|Lung(218;0.105)		ACCTATTACAGAGTATCTTGC	0.313													26	19					0	0	1	0	0
CER1	9350	broad.mit.edu	37	9	14720306	14720306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:14720306G>A	uc003zlj.2	-	2	631	c.586C>T	c.(586-588)CCT>TCT	p.P196S		NM_005454	NP_005445	O95813	CER1_HUMAN	cerberus 1 precursor	196	CTCK.				BMP signaling pathway	extracellular space	cytokine activity				0				GBM - Glioblastoma multiforme(50;3.16e-06)		GCGGCTCCAGGAAAATGAACA	0.483													25	16					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14737460	14737460	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:14737460C>T	uc003zlm.2	-	37	7064	c.6474G>A	c.(6472-6474)GGG>GGA	p.G2158G	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Silent_p.G694G	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	2158	C-type lectin.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TTTGCCATTTCCCTTGTCTTT	0.473													14	6					0	0	1	0	0
C9orf93	203238	broad.mit.edu	37	9	15591462	15591462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:15591462G>A	uc003zmd.2	+	5	766	c.451G>A	c.(451-453)GAT>AAT	p.D151N	C9orf93_uc010mih.1_Missense_Mutation_p.D151N|C9orf93_uc003zme.2_Missense_Mutation_p.D58N|C9orf93_uc011lmu.1_Missense_Mutation_p.D151N|C9orf93_uc003zmc.2_Missense_Mutation_p.D151N	NM_173550	NP_775821	Q6TFL3	CI093_HUMAN	hypothetical protein LOC203238	151	Potential.|Glu-rich.										0				GBM - Glioblastoma multiforme(50;4.84e-07)		ATTTGAACATGATTTGGAGGA	0.333													26	15					0	0	1	0	0
MLLT3	4300	broad.mit.edu	37	9	20414340	20414340	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:20414340G>A	uc003zoe.2	-	5	763	c.504C>T	c.(502-504)AGC>AGT	p.S168S	MLLT3_uc011lne.1_Silent_p.S136S|MLLT3_uc011lnf.1_Silent_p.S165S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Missense_Mutation_p.A130V	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	168	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctgctgctactgctgc	0.144			T	MLL	ALL								3	10					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27173333	27173333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:27173333G>A	uc003zqi.3	+	6	1316	c.874G>A	c.(874-876)GGC>AGC	p.G292S	TEK_uc010mjc.1_Missense_Mutation_p.G145S|TEK_uc011lnn.1_Missense_Mutation_p.G292S|TEK_uc011lno.1_Missense_Mutation_p.G292S|TEK_uc011lnp.1_Missense_Mutation_p.G188S|TEK_uc003zqj.1_Missense_Mutation_p.G269S	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	292	Extracellular (Potential).|EGF-like 2.				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		CTGTGCCACAGGCTGGAAGGG	0.488													23	49					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32634315	32634315	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:32634315G>A	uc003zrg.1	-	1	1353	c.1263C>T	c.(1261-1263)TTC>TTT	p.F421F	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	421					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TCACCATCAGGAAGTTTTCGT	0.458													301	137					0	0	1	0	0
KIAA1045	23349	broad.mit.edu	37	9	34971592	34971592	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:34971592C>T	uc003zvq.2	+	2	475	c.297C>T	c.(295-297)TTC>TTT	p.F99F	KIAA1045_uc003zvr.2_Silent_p.F99F	NM_015297	NP_056112	Q9UPV7	K1045_HUMAN	hypothetical protein LOC23349	99							calcium ion binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00575)			CAAGTCGATTCACACCCCCTG	0.622													97	172					0	0	1	0	0
KIAA1045	23349	broad.mit.edu	37	9	34976538	34976538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:34976538C>T	uc003zvq.2	+	5	828	c.650C>T	c.(649-651)TCC>TTC	p.S217F	KIAA1045_uc003zvr.2_Missense_Mutation_p.S217F	NM_015297	NP_056112	Q9UPV7	K1045_HUMAN	hypothetical protein LOC23349	217							calcium ion binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00575)			ACAGATTGCTCCCTGACACTG	0.662													15	26					0	0	1	0	0
PRKACG	5568	broad.mit.edu	37	9	71628285	71628285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:71628285C>T	uc004agy.2	-	1	755	c.724G>A	c.(724-726)GAC>AAC	p.D242N		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	242	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						ATGGGCTGGTCGGCGTAGAAG	0.592													42	49					0	0	1	0	0
SMC5	23137	broad.mit.edu	37	9	72879317	72879317	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:72879317C>T	uc004ahr.2	+	2	400	c.283C>T	c.(283-285)CTT>TTT	p.L95F		NM_015110	NP_055925	Q8IY18	SMC5_HUMAN	SMC5 protein	95					DNA recombination|DNA repair	chromosome|nucleus	ATP binding			ovary(2)|central_nervous_system(1)	3						TGCCATTTGCCTTGGTTTAGC	0.383													30	78					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	74622997	74622997	+	RNA	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:74622997C>T	uc011lsc.1	-	1		c.56G>A				NR_024392				Homo sapiens heat shock 27kDa protein-like 2 pseudogene (HSPBL2), non-coding RNA.																		CGTGTATTTCCGCGTGAAGCA	0.562													5	12					0	0	1	0	0
RORB	6096	broad.mit.edu	37	9	77286749	77286749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:77286749G>A	uc004aji.2	+	9	1238	c.1189G>A	c.(1189-1191)GAA>AAA	p.E397K	RORB_uc004ajh.2_Missense_Mutation_p.E386K	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	397	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						GAAGCTTCAGGAAAAAATTTA	0.448													11	24					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79321533	79321533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:79321533G>A	uc010mpk.2	-	8	5781	c.5657C>T	c.(5656-5658)CCT>CTT	p.P1886L	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1886					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GTCACTAAAAGGATTAGTATA	0.473													6	15					0	0	1	0	0
GNA14	9630	broad.mit.edu	37	9	80144078	80144078	+	Silent	SNP	C	T	T	rs140008129		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:80144078C>T	uc004aku.2	-	2	739	c.216G>A	c.(214-216)ACG>ACA	p.T72T		NM_004297	NP_004288	O95837	GNA14_HUMAN	G alpha 14	72					activation of phospholipase C activity by dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(2)	2						AAACCAGCTTCGTGAACCCCT	0.448													95	177					0	0	1	0	0
FLJ46321	389763	broad.mit.edu	37	9	84606660	84606660	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:84606660C>T	uc004amn.2	+	4	1322	c.1275C>T	c.(1273-1275)TTC>TTT	p.F425F		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	425						integral to membrane					0						GGGGTGATTTCCTGATGTGGA	0.428													21	17					0	0	1	0	0
FLJ46321	389763	broad.mit.edu	37	9	84607771	84607771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:84607771G>A	uc004amn.2	+	4	2433	c.2386G>A	c.(2386-2388)GAT>AAT	p.D796N		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	796						integral to membrane					0						TTCAGACAAGGATCTGAGGTC	0.463													22	64					0	0	1	0	0
HNRNPK	3190	broad.mit.edu	37	9	86586837	86586837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:86586837G>A	uc004ang.3	-	11	1137	c.913C>T	c.(913-915)CGG>TGG	p.R305W	HNRNPK_uc011lsw.1_Missense_Mutation_p.R65W|HNRNPK_uc004and.3_Missense_Mutation_p.R65W|HNRNPK_uc004ank.3_Missense_Mutation_p.R305W|HNRNPK_uc004anf.3_Missense_Mutation_p.R305W|HNRNPK_uc004anh.3_Missense_Mutation_p.R281W|HNRNPK_uc011lsx.1_Missense_Mutation_p.R281W|HNRNPK_uc004ani.3_Missense_Mutation_p.R305W|HNRNPK_uc004anj.3_Missense_Mutation_p.R305W|HNRNPK_uc004ann.3_Missense_Mutation_p.R281W|HNRNPK_uc004anl.3_Missense_Mutation_p.R305W|HNRNPK_uc004anm.3_Missense_Mutation_p.R305W|uc004ano.1_5'Flank|MIR7-1_hsa-mir-7-1|MI0000263_5'Flank	NM_031262	NP_112552	P61978	HNRPK_HUMAN	heterogeneous nuclear ribonucleoprotein K	305	5 X 4 AA repeats of G-X-G-G.|2 X 6 AA approximate repeats.|2 X 22 AA approximate repeats.|Interaction with ZIK1 (By similarity).				interspecies interaction between organisms|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of receptor-mediated endocytosis|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of low-density lipoprotein particle clearance|signal transduction	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nuclear chromatin|nucleoplasm	protein binding|RNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|single-stranded DNA binding			skin(1)	1						GGAAGATTCCGAGCTCTGCTA	0.517													25	62					0	0	1	0	0
HNRNPK	3190	broad.mit.edu	37	9	86586839	86586839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:86586839G>A	uc004ang.3	-	11	1135	c.911C>T	c.(910-912)GCT>GTT	p.A304V	HNRNPK_uc011lsw.1_Missense_Mutation_p.A64V|HNRNPK_uc004and.3_Missense_Mutation_p.A64V|HNRNPK_uc004ank.3_Missense_Mutation_p.A304V|HNRNPK_uc004anf.3_Missense_Mutation_p.A304V|HNRNPK_uc004anh.3_Missense_Mutation_p.A280V|HNRNPK_uc011lsx.1_Missense_Mutation_p.A280V|HNRNPK_uc004ani.3_Missense_Mutation_p.A304V|HNRNPK_uc004anj.3_Missense_Mutation_p.A304V|HNRNPK_uc004ann.3_Missense_Mutation_p.A280V|HNRNPK_uc004anl.3_Missense_Mutation_p.A304V|HNRNPK_uc004anm.3_Missense_Mutation_p.A304V|uc004ano.1_5'Flank|MIR7-1_hsa-mir-7-1|MI0000263_5'Flank	NM_031262	NP_112552	P61978	HNRPK_HUMAN	heterogeneous nuclear ribonucleoprotein K	304	5 X 4 AA repeats of G-X-G-G.|2 X 6 AA approximate repeats.|2 X 22 AA approximate repeats.|Interaction with ZIK1 (By similarity).				interspecies interaction between organisms|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of receptor-mediated endocytosis|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of low-density lipoprotein particle clearance|signal transduction	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nuclear chromatin|nucleoplasm	protein binding|RNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|single-stranded DNA binding			skin(1)	1						AAGATTCCGAGCTCTGCTACC	0.522													25	61					0	0	1	0	0
WNK2	65268	broad.mit.edu	37	9	96021858	96021858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:96021858C>T	uc004ati.1	+	11	3028	c.3028C>T	c.(3028-3030)CCT>TCT	p.P1010S	WNK2_uc011lud.1_Missense_Mutation_p.P1010S|WNK2_uc004atj.2_Missense_Mutation_p.P1010S|WNK2_uc004atk.2_Missense_Mutation_p.P647S|WNK2_uc010mrc.1_Missense_Mutation_p.P958S	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1010					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						GCCCCACCTTCCTGAACAAGC	0.677													6	9					0	0	1	0	0
CDC14B	8555	broad.mit.edu	37	9	99296257	99296257	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:99296257G>A	uc004awj.2	-	9	1350	c.898C>T	c.(898-900)CTA>TTA	p.L300L	CDC14B_uc004awk.2_Silent_p.L300L|CDC14B_uc004awl.2_RNA|CDC14B_uc004awi.2_Silent_p.L263L	NM_033331	NP_201588	O60729	CC14B_HUMAN	CDC14 homolog B isoform 2	300	B.				activation of anaphase-promoting complex activity|DNA repair|G2/M transition DNA damage checkpoint	nucleolus|nucleoplasm	protein binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				CAGATATCTAGGAATTCTTTG	0.418													15	13					0	0	1	0	0
KIAA1529	57653	broad.mit.edu	37	9	100076902	100076902	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:100076902C>T	uc011lut.1	+	19	1913	c.1140C>T	c.(1138-1140)GCC>GCT	p.A380A	KIAA1529_uc004axe.1_Silent_p.A380A|KIAA1529_uc004axg.1_Silent_p.A241A|KIAA1529_uc011lus.1_Silent_p.A198A|KIAA1529_uc010msm.1_RNA|KIAA1529_uc004axf.2_Silent_p.A241A|KIAA1529_uc011luv.1_Silent_p.A238A	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				CTGCGTAGGCCCTGCTGGAGC	0.632													12	27					0	0	1	0	0
LPPR1	54886	broad.mit.edu	37	9	104048415	104048415	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:104048415C>T	uc004bbb.2	+	4	681	c.282C>T	c.(280-282)TTC>TTT	p.F94F	LPPR1_uc011lvi.1_Silent_p.F70F|LPPR1_uc004bbc.2_Silent_p.F94F|LPPR1_uc010mtc.2_Silent_p.F78F	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	94						integral to membrane	catalytic activity				0						CCATGTATTTCATAAAATCAA	0.373													29	36					0	0	1	0	0
BAAT	570	broad.mit.edu	37	9	104125007	104125007	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:104125007G>A	uc010mtd.2	-	4	1069	c.960C>T	c.(958-960)TTC>TTT	p.F320F	BAAT_uc004bbd.3_Silent_p.F320F	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	320					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	CAATGAAGAGGAATTGCCCCT	0.473													29	51					0	0	1	0	0
GRIN3A	116443	broad.mit.edu	37	9	104432608	104432608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:104432608C>T	uc004bbp.1	-	3	2687	c.2086G>A	c.(2086-2088)GAA>AAA	p.E696K	GRIN3A_uc004bbq.1_Missense_Mutation_p.E696K	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	696	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	CTCTTCCATTCATACAGAGTG	0.488													33	58					0	0	1	0	0
OR13C3	138803	broad.mit.edu	37	9	107298474	107298474	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:107298474G>A	uc004bcb.1	-	1	621	c.621C>T	c.(619-621)TTC>TTT	p.F207F		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	207	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						TTTCACATGCGAAATGATTGA	0.428													47	65					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113170295	113170295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:113170295G>A	uc010mtz.2	-	38	7922	c.7585C>T	c.(7585-7587)CGG>TGG	p.R2529W	SVEP1_uc010mty.2_Missense_Mutation_p.R455W	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2529	Sushi 19.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CCTTCGAGCCGAAAGCCTCGG	0.498													6	19					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113170558	113170558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:113170558G>A	uc010mtz.2	-	38	7659	c.7322C>T	c.(7321-7323)CCC>CTC	p.P2441L	SVEP1_uc010mty.2_Missense_Mutation_p.P367L	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2441	Sushi 18.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CTCAGGTTGGGGACATTCTAC	0.502													10	27					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113194892	113194892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:113194892G>A	uc010mtz.2	-	31	5420	c.5083C>T	c.(5083-5085)CCT>TCT	p.P1695S		NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1695	Sushi 6.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TTCTCCAAAGGAGGTGGCACC	0.448													29	73					0	0	1	0	0
AKNA	80709	broad.mit.edu	37	9	117103927	117103927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:117103927G>A	uc004biq.3	-	20	4088	c.3953C>T	c.(3952-3954)TCG>TTG	p.S1318L	AKNA_uc004bin.3_Missense_Mutation_p.S565L|AKNA_uc004bio.3_Missense_Mutation_p.S778L|AKNA_uc004bip.3_Missense_Mutation_p.S1237L|AKNA_uc004bir.3_Missense_Mutation_p.S1318L|AKNA_uc004bis.3_Missense_Mutation_p.S1318L|AKNA_uc010mve.2_Missense_Mutation_p.S1199L	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	1318					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						TGGGCGTGGCGACGACCCCGC	0.622													25	54					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	118950331	118950332	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:118950331_118950332GG>AA	uc004bjn.2	+	2	1695_1696	c.1314_1315GG>AA	c.(1312-1317)GGGGAT>GGAAAT	p.D439N	PAPPA_uc011lxp.1_Missense_Mutation_p.D232N|PAPPA_uc011lxq.1_Missense_Mutation_p.D232N	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	439	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						ACGACGGCGGGGATTGCCGCCA	0.594													13	19					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	118974146	118974146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:118974146G>A	uc004bjn.2	+	4	2234	c.1853G>A	c.(1852-1854)GGA>GAA	p.G618E	PAPPA_uc011lxp.1_Intron|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	618					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CCAGGGCCAGGAAATGACACC	0.532													71	179					0	0	1	0	0
TLR4	7099	broad.mit.edu	37	9	120476012	120476012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:120476012G>A	uc004bjz.2	+	3	1897	c.1606G>A	c.(1606-1608)GAT>AAT	p.D536N	TLR4_uc004bka.2_Missense_Mutation_p.D496N|TLR4_uc004bkb.2_Missense_Mutation_p.D336N	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	536	LRR 17.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						CTTTTCATTGGATACGTTTCC	0.408													9	25					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	121929669	121929669	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:121929669T>C	uc004bkc.2	-	8	2435	c.1979A>G	c.(1978-1980)TAT>TGT	p.Y660C		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	660					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						CCTCAGGCTATACCCAAACAC	0.572													62	108					0	0	1	0	0
OR1J4	26219	broad.mit.edu	37	9	125281758	125281758	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:125281758C>T	uc011lyw.1	+	1	339	c.339C>T	c.(337-339)TTC>TTT	p.F113F		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TAGACAATTTCCTTCTCACTT	0.408													37	53					0	0	1	0	0
OR1L8	138881	broad.mit.edu	37	9	125330336	125330336	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:125330336G>C	uc004bmp.1	-	1	421	c.421C>G	c.(421-423)CAC>GAC	p.H141D		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	141	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						AGGACACAGTGGTGGTGGCTC	0.552													17	29					0	0	1	0	0
OR1Q1	158131	broad.mit.edu	37	9	125377895	125377895	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:125377895G>A	uc011lyy.1	+	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_012364	NP_036496	Q15612	OR1Q1_HUMAN	olfactory receptor, family 1, subfamily Q,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ACAGCCTGAGGAATGGGGATG	0.473													19	48					0	0	1	0	0
RABGAP1	23637	broad.mit.edu	37	9	125760934	125760934	+	Silent	SNP	T	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:125760934T>G	uc011lzh.1	+	10	1397	c.1263T>G	c.(1261-1263)CCT>CCG	p.P421P	RABGAP1_uc004bnl.3_RNA	NM_012197	NP_036329	Q9Y3P9	RBGP1_HUMAN	RAB GTPase activating protein 1	421					cell cycle	centrosome|cytosol|microtubule associated complex	Rab GTPase activator activity|tubulin binding			ovary(3)|kidney(2)	5						TACAGGAGCCTGTTCGATTTC	0.393													47	94					0	0	1	0	0
C9orf117	286207	broad.mit.edu	37	9	130471740	130471740	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:130471740G>A	uc004brn.1	+	2	241	c.201G>A	c.(199-201)AAG>AAA	p.K67K	PTRH1_uc004brm.2_Intron|C9orf117_uc010mxl.1_RNA	NM_001012502	NP_001012520	Q5JU67	CI117_HUMAN	hypothetical protein LOC286207	67	Potential.										0						TGCAGGAGAAGATGTTCCGCC	0.607													16	9					0	0	1	0	0
TBC1D13	54662	broad.mit.edu	37	9	131565650	131565650	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:131565650A>G	uc010myj.2	+	8	788	c.665A>G	c.(664-666)AAC>AGC	p.N222S	TBC1D13_uc010myk.2_Intron|TBC1D13_uc010myl.2_Missense_Mutation_p.N41S	NM_018201	NP_060671	Q9NVG8	TBC13_HUMAN	TBC1 domain family, member 13	222	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0						GCCAAGCTCAACCCTGGCATC	0.542													18	48					0	0	1	0	0
CCBL1	883	broad.mit.edu	37	9	131605022	131605022	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:131605022G>A	uc004bwh.2	-	3	297	c.112C>T	c.(112-114)CCG>TCG	p.P38S	CCBL1_uc004bwf.2_Missense_Mutation_p.P72S|CCBL1_uc004bwg.2_RNA|CCBL1_uc010myn.2_Missense_Mutation_p.P38S|CCBL1_uc004bwj.2_Missense_Mutation_p.P38S|CCBL1_uc011mbl.1_Missense_Mutation_p.P132S|CCBL1_uc004bwi.2_RNA|CCBL1_uc010myo.2_Missense_Mutation_p.P38S	NM_004059	NP_004050	Q16773	KAT1_HUMAN	kynurenine aminotransferase I isoform a	38					kynurenine metabolic process|L-phenylalanine catabolic process|tryptophan catabolic process	cytosol|nucleus	1-aminocyclopropane-1-carboxylate synthase activity|cysteine-S-conjugate beta-lyase activity|glutamine-phenylpyruvate transaminase activity|kynurenine-oxoglutarate transaminase activity|L-glutamine:pyruvate aminotransferase activity|L-phenylalanine:pyruvate aminotransferase activity|protein homodimerization activity|pyridoxal phosphate binding			ovary(1)	1					L-Glutamine(DB00130)|Pyridoxal Phosphate(DB00114)	GGGAAATCCGGGAAGCCCTGG	0.542													14	36					0	0	1	0	0
SH3GLB2	56904	broad.mit.edu	37	9	131774560	131774560	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:131774560C>T	uc004bwv.2	-	6	725	c.579G>A	c.(577-579)CAG>CAA	p.Q193Q	SH3GLB2_uc004bww.2_Silent_p.Q197Q|SH3GLB2_uc004bwx.1_Silent_p.Q193Q|SH3GLB2_uc011mbm.1_Silent_p.Q197Q	NM_020145	NP_064530	Q9NR46	SHLB2_HUMAN	SH3-domain GRB2-like endophilin B2	193	BAR.				filopodium assembly|signal transduction	cytoplasm|nucleus	cytoskeletal adaptor activity|SH3 domain binding				0						GTCTAGTCTCCTGAAAGTCAG	0.652													3	7					0	0	1	0	0
ASS1	445	broad.mit.edu	37	9	133333923	133333923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:133333923G>A	uc004bzm.2	+	5	666	c.310G>A	c.(310-312)GAA>AAA	p.E104K	ASS1_uc004bzn.2_Missense_Mutation_p.E104K|ASS1_uc010mza.2_Missense_Mutation_p.E180K|ASS1_uc004bzo.2_Missense_Mutation_p.E104K|ASS1_uc010mzb.2_Missense_Mutation_p.E142K|ASS1_uc004bzp.2_Missense_Mutation_p.E104K|ASS1_uc010mzc.2_Missense_Mutation_p.E104K	NM_000050	NP_000041	P00966	ASSY_HUMAN	argininosuccinate synthetase 1	104					arginine biosynthetic process|urea cycle	cytosol	argininosuccinate synthase activity|ATP binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000514)	Adenosine triphosphate(DB00171)|L-Arginine(DB00125)|L-Aspartic Acid(DB00128)|L-Citrulline(DB00155)	CAAACAAGTGGAAATCGCCCA	0.657													7	15					0	0	1	0	0
ABL1	25	broad.mit.edu	37	9	133747523	133747523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:133747523C>T	uc004bzw.2	+	5	833	c.830C>T	c.(829-831)ACC>ATC	p.T277I	ABL1_uc004bzv.2_Missense_Mutation_p.T296I	NM_005157	NP_005148	P00519	ABL1_HUMAN	c-abl oncogene 1, receptor tyrosine kinase	277	Protein kinase.				actin cytoskeleton organization|axon guidance|blood coagulation|cell adhesion|DNA damage induced protein phosphorylation|DNA damage response, signal transduction resulting in induction of apoptosis|mismatch repair|muscle cell differentiation|negative regulation of protein serine/threonine kinase activity|peptidyl-tyrosine phosphorylation|positive regulation of muscle cell differentiation|positive regulation of oxidoreductase activity|regulation of transcription involved in S phase of mitotic cell cycle	cytoskeleton|cytosol|nuclear membrane|nucleolus|perinuclear region of cytoplasm	ATP binding|DNA binding|magnesium ion binding|manganese ion binding|mitogen-activated protein kinase binding|non-membrane spanning protein tyrosine kinase activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding			haematopoietic_and_lymphoid_tissue(807)|lung(5)|stomach(2)|central_nervous_system(1)|breast(1)|skin(1)	817		all_hematologic(13;0.0361)|Acute lymphoblastic leukemia(5;0.0543)|Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.4e-05)	Adenosine triphosphate(DB00171)|Dasatinib(DB01254)|Imatinib(DB00619)	CAGGAGGACACCATGGAGGTG	0.458			T|Mis	BCR|ETV6|NUP214	CML|ALL|T-ALL								15	30					0	0	1	0	0
CEL	1056	broad.mit.edu	37	9	135939861	135939861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:135939861C>T	uc010naa.1	+	2	162	c.146C>T	c.(145-147)TCT>TTT	p.S49F		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	46	Heparin-binding.				cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		CTGGGTGACTCTGTGGACATC	0.632													21	40					0	0	1	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136321797	136321797	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:136321797T>G	uc004cdv.3	+	27	4292	c.3848T>G	c.(3847-3849)CTG>CGG	p.L1283R	ADAMTS13_uc004cdp.3_Missense_Mutation_p.L454R|ADAMTS13_uc004cdt.1_Missense_Mutation_p.L1227R|ADAMTS13_uc004cdu.1_Missense_Mutation_p.L1196R|ADAMTS13_uc004cdw.3_Missense_Mutation_p.L1227R|ADAMTS13_uc004cdx.3_Missense_Mutation_p.L1196R|ADAMTS13_uc004cdz.3_Missense_Mutation_p.L953R|ADAMTS13_uc004cea.1_Missense_Mutation_p.L79R|ADAMTS13_uc004ceb.3_Missense_Mutation_p.L79R	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1283	CUB 1.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		GGTGGGGTGCTGCTGCGGTAT	0.617													4	5					0	0	1	0	0
TMEM8C	389827	broad.mit.edu	37	9	136385351	136385351	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:136385351G>A	uc011mdk.1	-	2	195	c.195C>T	c.(193-195)ATC>ATT	p.I65I		NM_001080483	NP_001073952	A6NI61	TMM8C_HUMAN	transmembrane protein 8C	65	Helical; (Potential).					integral to membrane					0						AATACTCCAGGATGTCGTGAC	0.582													23	53					0	0	1	0	0
SARDH	1757	broad.mit.edu	37	9	136535833	136535833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:136535833G>A	uc004cep.3	-	19	2502	c.2368C>T	c.(2368-2370)CCC>TCC	p.P790S	SARDH_uc004ceo.2_Missense_Mutation_p.P790S|SARDH_uc011mdn.1_Missense_Mutation_p.P790S|SARDH_uc011mdo.1_Missense_Mutation_p.P622S|SARDH_uc004cen.2_Missense_Mutation_p.P218S	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	790					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		GCCTCCAGGGGGCTGTCGTCT	0.706													5	6					0	0	1	0	0
SARDH	1757	broad.mit.edu	37	9	136578247	136578247	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:136578247C>T	uc004cep.3	-	9	1285	c.1151_splice	c.e9-1	p.E384_splice	SARDH_uc004ceo.2_Splice_Site_p.E384_splice|SARDH_uc011mdn.1_Splice_Site_p.E384_splice|SARDH_uc011mdo.1_Splice_Site_p.E216_splice	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor						glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		GTGAAGGATTCTGAAAGAAGG	0.602													6	8					0	0	1	0	0
RXRA	6256	broad.mit.edu	37	9	137293577	137293577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:137293577C>T	uc004cfb.2	+	2	290	c.128C>T	c.(127-129)TCC>TTC	p.S43F	RXRA_uc004cfa.1_Silent_p.L93L	NM_002957	NP_002948	P19793	RXRA_HUMAN	retinoid X receptor, alpha	43	Modulating (By similarity).				cellular lipid metabolic process|cholesterol metabolic process|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to retinoic acid|vitamin metabolic process	nuclear chromatin|nucleoplasm	enzyme binding|ligand-regulated transcription factor activity|protein heterodimerization activity|retinoic acid-responsive element binding|retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|transcription coactivator activity|vitamin D receptor binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(145;4.66e-08)|Epithelial(140;6.72e-08)|all cancers(34;2.22e-07)	Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)	GGCATCGGCTCCCCGGGACAG	0.687													42	55					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137697031	137697031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:137697031G>A	uc004cfe.2	+	41	3611	c.3229G>A	c.(3229-3231)GAA>AAA	p.E1077K		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1077	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GAAAGGCAATGAAGGGCCCCC	0.587													24	44					0	0	1	0	0
GLT6D1	360203	broad.mit.edu	37	9	138516118	138516118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:138516118G>A	uc010nbd.1	-	5	910	c.656C>T	c.(655-657)CCG>CTG	p.P219L		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	219	Lumenal (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		CTGTCCAAACGGGATGCAAGC	0.488													37	69					0	0	1	0	0
KCNT1	57582	broad.mit.edu	37	9	138676448	138676448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:138676448C>T	uc011mdq.1	+	26	3085	c.3011C>T	c.(3010-3012)TCG>TTG	p.S1004L	KCNT1_uc011mdr.1_Missense_Mutation_p.S831L|KCNT1_uc010nbf.2_Missense_Mutation_p.S959L|KCNT1_uc004cgo.1_Missense_Mutation_p.S753L	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	1004						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		ACGCCGGGCTCGGGGTACCTC	0.582													7	6					0	0	1	0	0
KCNT1	57582	broad.mit.edu	37	9	138676636	138676636	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:138676636C>T	uc011mdq.1	+	27	3131	c.3057C>T	c.(3055-3057)ATC>ATT	p.I1019I	KCNT1_uc011mdr.1_Silent_p.I846I|KCNT1_uc010nbf.2_Silent_p.I974I|KCNT1_uc004cgo.1_Silent_p.I768I	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	1019						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		ACCTGTGGATCCGCACGTACG	0.632													25	36					0	0	1	0	0
ABCA2	20	broad.mit.edu	37	9	139910619	139910619	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:139910619G>A	uc011mem.1	-	21	3257	c.3109C>T	c.(3109-3111)CTG>TTG	p.L1037L	ABCA2_uc011mel.1_Silent_p.L1038L|ABCA2_uc004ckl.1_Silent_p.L968L|ABCA2_uc004ckm.1_Silent_p.L1068L|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	1037	ABC transporter 1.				cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		AGGCCGGTCAGGATGGACCTG	0.657													29	39					0	0	1	0	0
EXD3	54932	broad.mit.edu	37	9	140218300	140218300	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr9:140218300G>A	uc004cmp.2	-	19	2257	c.2061C>T	c.(2059-2061)GCC>GCT	p.A687A	C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Silent_p.A338A	NM_017820	NP_060290	Q8N9H8	MUT7_HUMAN	exonuclease 3'-5' domain containing 3	687					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						CCCCGACCTGGGCCCGGAGCT	0.692													13	12					0	0	1	0	0
PPP2R3B	28227	broad.mit.edu	37	X	295177	295177	+	Silent	SNP	G	A	A	rs148086983	byFrequency	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:295177G>A	uc004cpg.2	-	13	1854	c.1653C>T	c.(1651-1653)TTC>TTT	p.F551F	PPP2R3B_uc004cpf.2_Silent_p.F152F	NM_013239	NP_037371	Q9Y5P8	P2R3B_HUMAN	protein phosphatase 2, regulatory subunit B'',	551					cell cycle arrest|protein dephosphorylation	nucleus|protein phosphatase type 2A complex	calcium ion binding|protein phosphatase type 2A regulator activity|protein serine/threonine phosphatase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				AGGGCGCCTCGAAGAAGGGCC	0.711													11	5					0	0	1	0	0
ARSD	414	broad.mit.edu	37	X	2825384	2825384	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:2825384C>T	uc004cqy.2	-	10	1786	c.1710G>A	c.(1708-1710)AAG>AAA	p.K570K	ARSD_uc004cqz.1_RNA	NM_001669	NP_001660	P51689	ARSD_HUMAN	arylsulfatase D isoform a precursor	570						lysosome	arylsulfatase activity|metal ion binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GCAGCCACGGCTTCCACAGGA	0.612													19	3					0	0	1	0	0
ARSF	416	broad.mit.edu	37	X	3007670	3007670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:3007670G>A	uc004cre.1	+	7	1185	c.964G>A	c.(964-966)GTG>ATG	p.V322M	ARSF_uc004crf.1_Missense_Mutation_p.V322M	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	322						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GGACTCCATGGTGGGTAAGTC	0.488													19	10					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3228779	3228779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:3228779G>A	uc004crg.3	-	7	7622	c.7465C>T	c.(7465-7467)CCA>TCA	p.P2489S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2489	Ig-like C2-type 9.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CCATAGTATGGAGCTGGCAGA	0.572													7	0					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3235706	3235706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:3235706C>T	uc004crg.3	-	6	6173	c.6016G>A	c.(6016-6018)GAA>AAA	p.E2006K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2006	Ig-like C2-type 4.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GTCCGGTTTTCGTGCAGGGTG	0.622													7	7					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3241641	3241641	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:3241641G>A	uc004crg.3	-	5	2242	c.2085C>T	c.(2083-2085)ATC>ATT	p.I695I		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	695						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CATCCTCCACGATGTCTTCTC	0.517													30	8					0	0	1	0	0
SHROOM2	357	broad.mit.edu	37	X	9864158	9864158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:9864158C>T	uc004csu.1	+	4	2300	c.2210C>T	c.(2209-2211)TCA>TTA	p.S737L		NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	737	ASD1.				apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				CAGCCACCCTCATCTACAAGT	0.622													9	3					0	0	1	0	0
EGFL6	25975	broad.mit.edu	37	X	13635872	13635872	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:13635872G>A	uc004cvi.2	+	8	1042	c.802G>A	c.(802-804)GAA>AAA	p.E268K	EGFL6_uc004cvj.2_Missense_Mutation_p.E268K|EGFL6_uc011mik.1_Missense_Mutation_p.E169K	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	268					cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						TTCTGTGAAGGAAGTCCTCAG	0.348													60	19					0	0	1	0	0
SCML2	10389	broad.mit.edu	37	X	18283920	18283920	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:18283920G>A	uc004cyl.2	-	8	890	c.733C>T	c.(733-735)CCT>TCT	p.P245S	SCML2_uc004cyk.3_RNA|SCML2_uc010nfd.1_Missense_Mutation_p.P245S|SCML2_uc011miz.1_Missense_Mutation_p.P179S|SCML2_uc010nfc.2_5'UTR	NM_006089	NP_006080	Q9UQR0	SCML2_HUMAN	sex comb on midleg-like 2	245					anatomical structure morphogenesis	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(33;0.183)					TTTACAATAGGAACTGAGGAA	0.333													14	5					0	0	1	0	0
CNKSR2	22866	broad.mit.edu	37	X	21627571	21627571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:21627571G>A	uc004czx.1	+	20	2564	c.2528G>A	c.(2527-2529)CGA>CAA	p.R843Q	CNKSR2_uc004czw.2_Missense_Mutation_p.R843Q|CNKSR2_uc011mjn.1_Missense_Mutation_p.R794Q|CNKSR2_uc011mjo.1_Missense_Mutation_p.R813Q|CNKSR2_uc004czy.2_Missense_Mutation_p.R435Q	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	843					regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						GGCAAGCCTCGAAGTTTTACT	0.512													36	17					0	0	1	0	0
ZFX	7543	broad.mit.edu	37	X	24229281	24229281	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:24229281A>T	uc004dbf.2	+	9	2464	c.2206A>T	c.(2206-2208)AAG>TAG	p.K736*	ZFX_uc004dbe.2_3'UTR|ZFX_uc011mjv.1_Nonsense_Mutation_p.K775*|ZFX_uc010nfz.2_Nonsense_Mutation_p.K392*	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	736	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						TGAGCTTAAAAAGCATATGAA	0.413													87	33					0	0	1	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212435	26212435	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:26212435G>A	uc004dbr.2	+	2	621	c.472G>A	c.(472-474)GAT>AAT	p.D158N	MAGEB6_uc010ngc.1_5'UTR	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	158	Ser-rich.									ovary(3)	3						TGGCTCGCCTGATGCAGGTGT	0.512													15	5					0	0	1	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212851	26212851	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:26212851C>T	uc004dbr.2	+	2	1037	c.888C>T	c.(886-888)TTC>TTT	p.F296F	MAGEB6_uc010ngc.1_Silent_p.F76F	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	296	MAGE.									ovary(3)	3						TTGTGATCTTCATGAACGGCA	0.537													71	27					0	0	1	0	0
DCAF8L2	347442	broad.mit.edu	37	X	27766497	27766497	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:27766497C>T	uc011mjy.1	+	1	1572	c.1485C>T	c.(1483-1485)TTC>TTT	p.F495F		NM_001136533	NP_001130005			DDB1 and CUL4 associated factor 8-like 2											central_nervous_system(1)|pancreas(1)	2						GGCACATCTTCTTCTGGGAGA	0.458													3	2					0	0	1	0	0
MAGEB10	139422	broad.mit.edu	37	X	27839538	27839538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:27839538C>T	uc004dbw.2	+	3	342	c.115C>T	c.(115-117)CCC>TCC	p.P39S		NM_182506	NP_872312	Q96LZ2	MAGBA_HUMAN	melanoma antigen family B, 10	39										lung(1)|breast(1)|central_nervous_system(1)	3						GGAAGAATCTCCCCCCTCTGC	0.522													17	4					0	0	1	0	0
DMD	1756	broad.mit.edu	37	X	32328309	32328309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:32328309C>T	uc004dda.1	-	42	6251	c.6007G>A	c.(6007-6009)GAA>AAA	p.E2003K	DMD_uc004dcw.2_Missense_Mutation_p.E659K|DMD_uc004dcx.2_Missense_Mutation_p.E662K|DMD_uc004dcz.2_Missense_Mutation_p.E1880K|DMD_uc004dcy.1_Missense_Mutation_p.E1999K|DMD_uc004ddb.1_Missense_Mutation_p.E1995K|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2003					muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TGAGTGATTTCAGTCAAATAA	0.408													12	1					0	0	1	0	0
FAM47A	158724	broad.mit.edu	37	X	34149228	34149229	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:34149228_34149229CC>TT	uc004ddg.2	-	1	1200_1201	c.1167_1168GG>AA	c.(1165-1170)CCGGAG>CCAAAG	p.E390K		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	390										ovary(4)|central_nervous_system(1)	5						TTGGGAGGCTCCGGGCTGAGAT	0.619													29	13					0	0	1	0	0
CXorf22	170063	broad.mit.edu	37	X	35969476	35969476	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:35969476G>A	uc004ddj.2	+	5	944	c.885G>A	c.(883-885)TTG>TTA	p.L295L	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	295										large_intestine(1)|lung(1)|ovary(1)	3						GAGAAGAATTGGTAAGTAAGT	0.348													6	4					0	0	1	0	0
MAOB	4129	broad.mit.edu	37	X	43662605	43662605	+	Missense_Mutation	SNP	G	A	A	rs149395667	byFrequency	TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:43662605G>A	uc004dfz.3	-	4	502	c.326C>T	c.(325-327)CCA>CTA	p.P109L	MAOB_uc011mkx.1_Missense_Mutation_p.P93L|MAOB_uc011mky.1_Missense_Mutation_p.P93L	NM_000898	NP_000889	P27338	AOFB_HUMAN	monoamine oxidase B	109	Cytoplasmic.				xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	electron carrier activity|primary amine oxidase activity			ovary(1)|central_nervous_system(1)	2					Amantadine(DB00915)|Bupropion(DB01156)|Carbidopa(DB00190)|Citalopram(DB00215)|Dopamine(DB00988)|Entacapone(DB00494)|Furazolidone(DB00614)|Ginkgo biloba(DB01381)|Ibuprofen(DB01050)|Imipramine(DB00458)|Iproniazid(DB04818)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Maprotiline(DB00934)|Meclizine(DB00737)|Moclobemide(DB01171)|Nicotine(DB00184)|Pargyline(DB01626)|Phenelzine(DB00780)|Phentermine(DB00191)|Rasagiline(DB01367)|Selegiline(DB01037)|Tranylcypromine(DB00752)	GTAGGTAATTGGATTCCATAC	0.358													19	9					0	0	1	0	0
SLC38A5	92745	broad.mit.edu	37	X	48325351	48325351	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:48325351G>A	uc010nid.2	-	5	421	c.243C>T	c.(241-243)TTC>TTT	p.F81F	SLC38A5_uc004djk.3_Silent_p.F30F	NM_033518	NP_277053	Q8WUX1	S38A5_HUMAN	solute carrier family 38, member 5	81	Extracellular (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to membrane|plasma membrane				ovary(3)	3						GGACTCACAGGAAGAAGATGA	0.647											OREG0019763	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	7					0	0	1	0	0
SSX8	280659	broad.mit.edu	37	X	52659424	52659424	+	RNA	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:52659424G>A	uc011moa.1	+	7		c.921G>A			SSX8_uc011mob.1_RNA					Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						CCCGGGAAAAGCAAATACTTC	0.493													46	15					0	0	1	0	0
FGD1	2245	broad.mit.edu	37	X	54492258	54492258	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:54492258G>A	uc004dtg.2	-	7	2102	c.1368C>T	c.(1366-1368)ATC>ATT	p.I456I	FGD1_uc011moi.1_Silent_p.I214I	NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	456	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GTTTCTGCAGGATGTCTCCAA	0.567													19	8					0	0	1	0	0
OTUD6A	139562	broad.mit.edu	37	X	69283082	69283082	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:69283082C>T	uc004dxu.1	+	1	742	c.708C>T	c.(706-708)ATC>ATT	p.I236I		NM_207320	NP_997203	Q7L8S5	OTU6A_HUMAN	OTU domain containing 6A	236	OTU.									lung(1)|skin(1)	2						TCGAGGTGATCCAGGCCGACT	0.612													19	5					0	0	1	0	0
PHKA1	5255	broad.mit.edu	37	X	71895931	71895931	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:71895931C>T	uc004eax.3	-	6	908	c.607G>A	c.(607-609)GGA>AGA	p.G203R	PHKA1_uc004eay.3_Missense_Mutation_p.G203R|PHKA1_uc011mqi.1_Missense_Mutation_p.G203R	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	203					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					TTTGCCATTCCAACTGAACTG	0.418													26	9					0	0	1	0	0
NAP1L2	4674	broad.mit.edu	37	X	72433383	72433383	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:72433383C>T	uc004ebi.2	-	1	1302	c.946G>A	c.(946-948)GAT>AAT	p.D316N	NAP1L2_uc011mqj.1_Missense_Mutation_p.D174N	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	316					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					GGATGGGGATCATAATATGCT	0.383													57	15					0	0	1	0	0
ZDHHC15	158866	broad.mit.edu	37	X	74641821	74641821	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:74641821G>A	uc004ecg.2	-	9	1219	c.741C>T	c.(739-741)GCC>GCT	p.A247A	ZDHHC15_uc004ech.2_Silent_p.A238A|ZDHHC15_uc011mqo.1_RNA	NM_144969	NP_659406	Q96MV8	ZDH15_HUMAN	zinc finger, DHHC-type containing 15 isoform 1	247						integral to membrane	zinc ion binding			ovary(2)	2						GAGTGCAGAAGGCCTCTAAGG	0.408													10	6					0	0	1	0	0
ATRX	546	broad.mit.edu	37	X	76855029	76855029	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:76855029T>C	uc004ecp.3	-	25	6039	c.5807A>G	c.(5806-5808)AAG>AGG	p.K1936R	ATRX_uc004ecq.3_Missense_Mutation_p.K1898R|ATRX_uc004eco.3_Missense_Mutation_p.K1721R	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1936	Poly-Lys.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTTTTTCCCCTTTTTCCCTTT	0.318			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						3	157					0	0	1	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83319312	83319312	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:83319312C>T	uc004eej.1	-	22	2288	c.2211G>A	c.(2209-2211)ATG>ATA	p.M737I	RPS6KA6_uc011mqt.1_Missense_Mutation_p.M737I|RPS6KA6_uc011mqu.1_Missense_Mutation_p.M634I	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	737					axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						TTCGCTTTTTCATGCTCCGTC	0.453													11	1					0	0	1	0	0
RNF128	79589	broad.mit.edu	37	X	106016278	106016278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:106016278C>T	uc004eml.2	+	2	870	c.620C>T	c.(619-621)TCA>TTA	p.S207L	RNF128_uc004emk.2_Missense_Mutation_p.S181L	NM_194463	NP_919445	Q8TEB7	RN128_HUMAN	ring finger protein 128 isoform 1	207						endomembrane system|integral to membrane|perinuclear region of cytoplasm	zinc ion binding			ovary(1)|central_nervous_system(1)	2						AATCACTATTCAATTTTTTTC	0.388													29	21					0	0	1	0	0
KLHL13	90293	broad.mit.edu	37	X	117079532	117079532	+	Silent	SNP	G	A	A	rs142579121		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:117079532G>A	uc004eql.2	-	2	167	c.105C>T	c.(103-105)CTC>CTT	p.L35L	KLHL13_uc004eqk.2_5'UTR|KLHL13_uc011mtn.1_5'UTR|KLHL13_uc011mto.1_Silent_p.L29L|KLHL13_uc011mtp.1_Silent_p.L37L|KLHL13_uc004eqm.2_5'UTR|KLHL13_uc011mtq.1_Silent_p.L19L	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	35					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						CCTCTTCCACGAGAGATCTGA	0.388													11	5					0	0	1	0	0
ZCCHC12	170261	broad.mit.edu	37	X	117959335	117959335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:117959335G>A	uc004equ.2	+	4	601	c.128G>A	c.(127-129)AGA>AAA	p.R43K		NM_173798	NP_776159	Q6PEW1	ZCH12_HUMAN	zinc finger, CCHC domain containing 12	43					regulation of transcription, DNA-dependent|transcription, DNA-dependent		nucleic acid binding|zinc ion binding			ovary(1)	1						ATGGCAGACAgaaacatgaag	0.303													22	8					0	0	1	0	0
ACTRT1	139741	broad.mit.edu	37	X	127185392	127185392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:127185392G>A	uc004eum.2	-	1	991	c.794C>T	c.(793-795)CCT>CTT	p.P265L		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	265						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						CAGCTGGTCAGGTGCAAAAAG	0.512													46	21					0	0	1	0	0
ZDHHC9	51114	broad.mit.edu	37	X	128975787	128975787	+	Silent	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:128975787G>A	uc004euv.2	-	2	504	c.135C>T	c.(133-135)ATC>ATT	p.I45I	ZDHHC9_uc004euw.2_Silent_p.I45I|ZDHHC9_uc004eux.1_Silent_p.I45I|ZDHHC9_uc004euy.1_Intron	NM_001008222	NP_001008223	Q9Y397	ZDHC9_HUMAN	zinc finger, DHHC domain containing 9	45	Helical; (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)	1						ATGTCCCCAGGATGAGGAAAA	0.502													45	17					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135487867	135487867	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:135487867G>A	uc004ezu.1	+	23	8962	c.8671G>A	c.(8671-8673)GAT>AAT	p.D2891N	GPR112_uc010nsb.1_Missense_Mutation_p.D2686N	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2891	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GATTAAAGATGATTCTATCTT	0.299													13	5					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993203	140993203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:140993203G>A	uc004fbt.2	+	4	299	c.13G>A	c.(13-15)GAT>AAT	p.D5N	MAGEC1_uc010nsl.1_5'UTR	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	5							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AGGGGACAAGGATATGCCTAC	0.363										HNSCC(15;0.026)			23	10					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993339	140993339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:140993339C>T	uc004fbt.2	+	4	435	c.149C>T	c.(148-150)CCT>CTT	p.P50L	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	50							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					ACCCTGTATCCTCTCCAGAGT	0.587										HNSCC(15;0.026)			41	15					0	0	1	0	0
SLITRK4	139065	broad.mit.edu	37	X	142716477	142716477	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:142716477C>T	uc004fbx.2	-	2	2824	c.2448G>A	c.(2446-2448)GCG>GCA	p.A816A	SLITRK4_uc004fby.2_Silent_p.A816A	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	816	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TCTGCAGTTTCGCCTTCAGTT	0.398													24	8					0	0	1	0	0
ZNF185	7739	broad.mit.edu	37	X	152100320	152100320	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:152100320G>A	uc010ntv.1	+	13	1056	c.1019G>A	c.(1018-1020)AGG>AAG	p.R340K	ZNF185_uc011myg.1_Missense_Mutation_p.R340K|ZNF185_uc011myh.1_Missense_Mutation_p.R311K|ZNF185_uc011myi.1_Missense_Mutation_p.R311K|ZNF185_uc011myj.1_Missense_Mutation_p.R281K|ZNF185_uc011myk.1_Missense_Mutation_p.R341K|ZNF185_uc004fgw.3_Missense_Mutation_p.R119K|ZNF185_uc004fgu.2_Intron|ZNF185_uc004fgv.2_Missense_Mutation_p.R37K	NM_007150	NP_009081	O15231	ZN185_HUMAN	zinc finger protein 185	340						cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GATGCTGCAAGGTAACTCAGT	0.572													9	1					0	0	1	0	0
IRAK1	3654	broad.mit.edu	37	X	153284108	153284108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:153284108C>T	uc004fjs.1	-	5	750	c.671G>A	c.(670-672)GGG>GAG	p.G224E	IRAK1_uc004fjr.1_Missense_Mutation_p.G224E|IRAK1_uc004fjt.1_Missense_Mutation_p.G224E|IRAK1_uc010nur.2_Intron|IRAK1_uc004fju.2_Missense_Mutation_p.G250E	NM_001569	NP_001560	P51617	IRAK1_HUMAN	interleukin-1 receptor-associated kinase 1	224	ATP (By similarity).|Protein kinase.				activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|anti-apoptosis|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|lipopolysaccharide-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|protein autophosphorylation|protein oligomerization|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transmembrane receptor protein serine/threonine kinase signaling pathway	cytosol|endosome membrane|interleukin-1 receptor complex	ATP binding|NF-kappaB-inducing kinase activity|protein binding|protein heterodimerization activity|protein homodimerization activity|ubiquitin-protein ligase activity			lung(5)|ovary(2)|breast(1)|central_nervous_system(1)	9	all_cancers(53;3.7e-16)|all_epithelial(53;3.44e-10)|all_lung(58;2.06e-07)|Lung NSC(58;2.72e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GTACACGCACCCAAAGCCACC	0.622													71	25					0	0	1	0	0
CLIC2	1193	broad.mit.edu	37	X	154507335	154507335	+	Missense_Mutation	SNP	G	A	A	rs5940668		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:154507335G>A	uc004fnf.2	-	6	851	c.601C>T	c.(601-603)CGT>TGT	p.R201C		NM_001289	NP_001280	O15247	CLIC2_HUMAN	chloride intracellular channel 2	201	GST C-terminal.|C-terminal.				signal transduction	chloride channel complex|cytoplasm|nucleus	voltage-gated chloride channel activity	p.R201C(1)		large_intestine(1)|ovary(1)|skin(1)	3	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TCAAAGTCACGATATTTCTTG	0.398													28	9					0	0	1	0	0
IL9R	3581	broad.mit.edu	37	X	155239621	155239621	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrX:155239621C>T	uc004fnv.1	+	9	1292	c.1113C>T	c.(1111-1113)GCC>GCT	p.A371A	IL9R_uc004fnu.1_3'UTR	NM_002186	NP_002177	Q01113	IL9R_HUMAN	interleukin 9 receptor precursor	371	Cytoplasmic (Potential).				cell proliferation	extracellular space|integral to plasma membrane	interleukin-9 receptor activity				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					AATCTGTGGCCCTGGAGGAGG	0.657													19	54					0	0	1	0	0
PCDH11Y	83259	broad.mit.edu	37	Y	4925050	4925050	+	Silent	SNP	C	T	T			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chrY:4925050C>T	uc004fqo.2	+	1	920	c.186C>T	c.(184-186)ATC>ATT	p.I62I	PCDH11Y_uc010nwg.1_Silent_p.I51I|PCDH11Y_uc004fql.1_Silent_p.I51I|PCDH11Y_uc004fqm.1_Silent_p.I51I|PCDH11Y_uc004fqn.1_Silent_p.I62I	NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	62	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						ACTACACCATCCGAGAAGAAA	0.463													17	6					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228506831	228506831	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr1:228506831delC	uc009xez.1	+	54	14422	c.14378delC	c.(14377-14379)GCCfs	p.A4793fs	OBSCN_uc001hsn.2_Frame_Shift_Del_p.A4793fs	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4793					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GATGAGCTGGCCCGCACTGGA	0.647													9	29	---	---	---	---					
SERPING1	710	broad.mit.edu	37	11	57365774	57365776	+	In_Frame_Del	DEL	CTG	-	-			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:57365774_57365776delCTG	uc001nkp.1	+	2	222_224	c.31_33delCTG	c.(31-33)CTGdel	p.L15del	SERPING1_uc001nkq.1_In_Frame_Del_p.L15del|SERPING1_uc010rju.1_Intron|SERPING1_uc010rjv.1_In_Frame_Del_p.L15del|SERPING1_uc001nkr.1_In_Frame_Del_p.L15del|SERPING1_uc009ymi.1_In_Frame_Del_p.L15del|SERPING1_uc009ymj.1_In_Frame_Del_p.L15del|SERPING1_uc001nks.1_5'UTR	NM_000062	NP_000053	P05155	IC1_HUMAN	serpin peptidase inhibitor, clade G, member 1	15					blood circulation|blood coagulation, intrinsic pathway|complement activation, classical pathway|innate immune response|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation	extracellular space|platelet alpha granule lumen	protein binding|serine-type endopeptidase inhibitor activity			central_nervous_system(1)	1						GCTGACCCTCCTGCTGCTGCTGC	0.709									Hereditary_Angioedema				3	3	---	---	---	---					
MIR708	100126333	broad.mit.edu	37	11	79113119	79113119	+	RNA	DEL	C	-	-			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:79113119delC	hsa-mir-708|MI0005543	-			c.35delC			ODZ4_uc001ozl.3_Intron																	0						AAGTCAtttacccccagctag	0.139													4	6	---	---	---	---					
MMP12	4321	broad.mit.edu	37	11	102738795	102738796	+	Frame_Shift_Ins	INS	-	T	T	rs68192524		TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr11:102738795_102738796insT	uc001phk.2	-	5	674_675	c.629_630insA	c.(628-630)ACCfs	p.T210fs		NM_002426	NP_002417	P39900	MMP12_HUMAN	matrix metalloproteinase 12 preproprotein	210					positive regulation of epithelial cell proliferation involved in wound healing|proteolysis|wound healing, spreading of epidermal cells	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.014)	Acetohydroxamic Acid(DB00551)	AGGAACAAGTGGTGCCTAAGAA	0.416													3	5	---	---	---	---					
TCF25	22980	broad.mit.edu	37	16	89964979	89964979	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr16:89964979delC	uc002fpb.2	+	10	1119	c.1037delC	c.(1036-1038)GCCfs	p.A346fs	TCF25_uc002fpc.2_Frame_Shift_Del_p.A111fs	NM_014972	NP_055787	Q9BQ70	TCF25_HUMAN	NULP1	346					heart development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(9;4.71e-08)|Lung NSC(15;0.000192)|all_lung(18;0.000319)|all_neural(9;0.0122)|all_hematologic(23;0.027)		BRCA - Breast invasive adenocarcinoma(80;0.0288)		TTCTACCTGGCCCTCTACAAG	0.572													33	118	---	---	---	---					
MUC16	94025	broad.mit.edu	37	19	9058690	9058690	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:9058690delT	uc002mkp.2	-	3	28960	c.28756delA	c.(28756-28758)AGGfs	p.R9586fs		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9588	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGTCTCCCTCAGTCCAGGG	0.507													9	19	---	---	---	---					
STRN4	29888	broad.mit.edu	37	19	47226405	47226407	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr19:47226405_47226407delGCT	uc002pfl.2	-	13	1762_1764	c.1729_1731delAGC	c.(1729-1731)AGCdel	p.S577del	STRN4_uc002pfm.2_In_Frame_Del_p.S584del|STRN4_uc010xyf.1_RNA	NM_013403	NP_037535	Q9NRL3	STRN4_HUMAN	zinedin isoform 1	577	WD 3.					cytoplasm|membrane	armadillo repeat domain binding|calmodulin binding|protein complex binding|protein phosphatase 2A binding				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000563)|all cancers(93;0.00138)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.035)		GGCAGGCCGGGCTGCTGCTGCTG	0.700													2	4	---	---	---	---					
NRBP1	29959	broad.mit.edu	37	2	27663753	27663754	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr2:27663753_27663754insC	uc002rko.2	+	15	2107_2108	c.1275_1276insC	c.(1273-1278)GTGCCCfs	p.V425fs	NRBP1_uc002rkq.2_Frame_Shift_Ins_p.V424fs|NRBP1_uc002rkp.2_Frame_Shift_Ins_p.V425fs|NRBP1_uc002rkr.2_Frame_Shift_Ins_p.V216fs|KRTCAP3_uc002rks.2_5'Flank|KRTCAP3_uc010ylr.1_5'Flank|KRTCAP3_uc002rkt.2_5'Flank	NM_013392	NP_037524	Q9UHY1	NRBP_HUMAN	nuclear receptor binding protein	425_426					ER to Golgi vesicle-mediated transport|gene expression|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cell cortex|endomembrane system|lamellipodium|membrane|nucleoplasm	ATP binding|protein homodimerization activity|protein kinase activity			ovary(2)|lung(1)	3	Acute lymphoblastic leukemia(172;0.155)					CACCTGTCGTGCCCCCCTCTGT	0.599													20	63	---	---	---	---					
UBA3	9039	broad.mit.edu	37	3	69112644	69112649	+	In_Frame_Del	DEL	AATATG	-	-			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr3:69112644_69112649delAATATG	uc003dno.2	-	8	498_503	c.478_483delCATATT	c.(478-483)CATATTdel	p.HI160del	UBA3_uc003dnq.2_In_Frame_Del_p.HI146del|UBA3_uc011bfy.1_5'UTR|UBA3_uc011bfz.1_5'UTR	NM_003968	NP_003959	Q8TBC4	UBA3_HUMAN	ubiquitin-activating enzyme 3 isoform 1	160_161	Interaction with UBE2M N-terminus.|ATP.			HI->AA: Reduces affinity for UBE2M.	protein neddylation|proteolysis	nucleus	acid-amino acid ligase activity|ATP binding|protein heterodimerization activity			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.98e-05)|Epithelial(33;0.000363)|LUSC - Lung squamous cell carcinoma(21;0.012)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.206)|Kidney(39;0.241)		CACATACAATAATATGAAATTCTACA	0.248													7	18	---	---	---	---					
TNRC18	84629	broad.mit.edu	37	7	5352666	5352668	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EE-A3JA-06A-11D-A20D-08	TCGA-EE-A3JA-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ac50a87-5fce-418c-afc2-c59e868a71f8	0892f851-4695-4c74-a323-e67e89435d2e	g.chr7:5352666_5352668delGAG	uc003soi.3	-	27	8203_8205	c.7854_7856delCTC	c.(7852-7857)TCCTCA>TCA	p.2618_2619SS>S		NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	2618_2619	Ser-rich.						DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		ggaggaggatgaggaggaggagg	0.305													2	4	---	---	---	---					
