Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PLEKHN1	84069	broad.mit.edu	37	1	909270	909270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:909270G>A	uc001ace.2	+	13	1683	c.1648G>A	c.(1648-1650)GTG>ATG	p.V550M	PLEKHN1_uc001acd.2_Missense_Mutation_p.V498M|PLEKHN1_uc001acf.2_Missense_Mutation_p.V463M	NM_032129	NP_115505	Q494U1	PKHN1_HUMAN	pleckstrin homology domain containing, family N	550											0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.00095)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		ACTCCCCTCGGTGCCTGTGTC	0.697000													34	102					0	0	1	0	0
PANK4	55229	broad.mit.edu	37	1	2458006	2458006	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:2458006G>A	uc001ajm.1	-	1	30	c.21C>T	c.(19-21)AGC>AGT	p.S7S	PANK4_uc010nza.1_Silent_p.S7S	NM_018216	NP_060686	Q9NVE7	PANK4_HUMAN	pantothenate kinase 4	7					coenzyme A biosynthetic process	cytoplasm	ATP binding|pantothenate kinase activity			upper_aerodigestive_tract(1)|large_intestine(1)|ovary(1)	3	all_cancers(77;0.000158)|all_epithelial(69;8.01e-05)|all_lung(157;0.0212)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.18e-20)|all_lung(118;1.67e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;1.54e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.95e-23)|GBM - Glioblastoma multiforme(42;2.81e-08)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.00445)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		TCCCGCTGCCGCTCGCTCCAC	0.592000													56	184					0	0	1	0	0
MMEL1	79258	broad.mit.edu	37	1	2537724	2537724	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:2537724C>T	uc001ajy.2	-	8	927	c.713G>A	c.(712-714)TGG>TAG	p.W238*	MMEL1_uc009vlg.1_RNA	NM_033467	NP_258428	Q495T6	MMEL1_HUMAN	membrane metallo-endopeptidase-like 1	238	Lumenal (Potential).				proteolysis	extracellular region|integral to membrane|intracellular membrane-bounded organelle	metal ion binding|metalloendopeptidase activity				0	all_cancers(77;0.000233)|all_epithelial(69;8.55e-05)|all_lung(157;0.0228)|Lung NSC(156;0.0402)|Ovarian(185;0.0634)	all_epithelial(116;1.03e-20)|all_lung(118;5.15e-09)|Lung NSC(185;9.02e-07)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;8.52e-23)|GBM - Glioblastoma multiforme(42;1.49e-08)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;0.000213)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00219)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.131)		GTCGTCGTTCCAGATGAAGAG	0.647000													69	41					0	0	1	0	0
ACTRT2	140625	broad.mit.edu	37	1	2938722	2938722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:2938722G>A	uc001ajz.2	+	1	677	c.472G>A	c.(472-474)GAC>AAC	p.D158N		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	158						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		CCTGGTGGTGGACAGCGGGGA	0.632000													40	122					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6194852	6194852	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:6194852C>T	uc001amb.1	-	19	3038	c.2938G>A	c.(2938-2940)GTA>ATA	p.V980I	CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	980					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		AGCAGCGATACTTGGTTCCCG	0.567000													313	187					0	0	1	0	0
PIK3CD	5293	broad.mit.edu	37	1	9784410	9784410	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:9784410T>G	uc001aqb.3	+	22	3003	c.2795T>G	c.(2794-2796)TTC>TGC	p.F932C	PIK3CD_uc010oaf.1_Missense_Mutation_p.F931C|PIK3CD_uc001aqe.3_Missense_Mutation_p.F956C	NM_005026	NP_005017	O00329	PK3CD_HUMAN	catalytic phosphatidylinositol 3-kinase delta	932	PI3K/PI4K.				phosphatidylinositol-mediated signaling|protein phosphorylation	phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(4)|skin(2)|central_nervous_system(1)	7	all_lung(157;0.222)	all_lung(118;2.44e-05)|Lung NSC(185;4.08e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0231)|Colorectal(212;7.52e-08)|COAD - Colon adenocarcinoma(227;1.78e-05)|Kidney(185;0.000322)|KIRC - Kidney renal clear cell carcinoma(229;0.00114)|BRCA - Breast invasive adenocarcinoma(304;0.0021)|STAD - Stomach adenocarcinoma(132;0.00395)|READ - Rectum adenocarcinoma(331;0.0419)		CGTGTCCCATTCATCCTCACC	0.517000													105	225					0	0	1	0	0
CASZ1	54897	broad.mit.edu	37	1	10702984	10702984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:10702984G>A	uc001aro.2	-	20	4414	c.4094C>T	c.(4093-4095)TCC>TTC	p.S1365F		NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	1365					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		TGACTCAGAGGACATGGCGCC	0.667000													38	20					0	0	1	0	0
AADACL3	126767	broad.mit.edu	37	1	12785286	12785286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:12785286G>A	uc009vnn.1	+	4	609	c.376G>A	c.(376-378)GAT>AAT	p.D126N	AADACL3_uc001aug.1_Missense_Mutation_p.D56N	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	126							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		ATATGGAGTGGATCCAGCCCG	0.547000													28	100					0	0	1	0	0
SLC25A34	284723	broad.mit.edu	37	1	16063163	16063164	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:16063163_16063164CC>TT	uc001axb.1	+	1	355_356	c.183_184CC>TT	c.(181-186)GCCCGA>GCTTGA	p.R62*	SLC25A34_uc009vok.1_5'Flank	NM_207348	NP_997231	Q6PIV7	S2534_HUMAN	solute carrier family 25, member 34	62	Solcar 1.|Helical; Name=2; (Potential).				transport	integral to membrane|mitochondrial inner membrane					0		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTGCTGTGGCCCGAGCAGACGG	0.658000													18	13					0	0	1	0	0
NBPF1	55672	broad.mit.edu	37	1	16892178	16892178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:16892178G>A	uc009vos.1	-	28	4127	c.3239C>T	c.(3238-3240)TCC>TTC	p.S1080F	uc001ayw.2_5'Flank	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	1080	NBPF 7.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TGCATAAAAGGAACTTCCATA	0.453000													21	920					0	0	1	0	0
ESPNP	284729	broad.mit.edu	37	1	17046488	17046488	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:17046488G>A	uc001azn.1	-	1	165	c.51C>T	c.(49-51)TCC>TCT	p.S17S		NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						GAAGCCTCAGGGAGGGGAAGT	0.617000													20	97					0	0	1	0	0
IGSF21	84966	broad.mit.edu	37	1	18702887	18702887	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:18702887C>T	uc001bau.1	+	7	1482	c.1099C>T	c.(1099-1101)CAG>TAG	p.Q367*	IGSF21_uc001bav.1_Nonsense_Mutation_p.Q188*	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	367	Ig-like 2.					extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		CCATGGGTTTCAGGTCAGCCT	0.577000													72	190					0	0	1	0	0
PLA2G2F	64600	broad.mit.edu	37	1	20471157	20471157	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:20471157C>T	uc009vpp.1	+	4	497	c.399C>T	c.(397-399)ATC>ATT	p.I133I		NM_022819	NP_073730	Q9BZM2	PA2GF_HUMAN	phospholipase A2, group IIF	90					lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000247)|Lung NSC(340;0.000285)|Breast(348;0.000812)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;8.01e-05)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.000524)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)		ATCACACCATCGAGAACAACA	0.597000													10	34					0	0	1	0	0
ECE1	1889	broad.mit.edu	37	1	21551913	21551913	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:21551913C>T	uc001bek.2	-	17	1945	c.1870G>A	c.(1870-1872)GGG>AGG	p.G624R	ECE1_uc001bem.2_Missense_Mutation_p.G608R|ECE1_uc001bej.2_Missense_Mutation_p.G612R|ECE1_uc001bei.2_Missense_Mutation_p.G621R|ECE1_uc010odl.1_Missense_Mutation_p.G624R	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	624	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		CGGAGGTTCCCGTCCTTGTCA	0.612000													19	66					0	0	1	0	0
EPHA8	2046	broad.mit.edu	37	1	22927895	22927895	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:22927895G>A	uc001bfx.1	+	16	2957	c.2832G>A	c.(2830-2832)ATG>ATA	p.M944I		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	944	Cytoplasmic (Potential).|SAM.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CCATCCGCATGGGCCGGTACC	0.692000													68	205					0	0	1	0	0
C1QB	713	broad.mit.edu	37	1	22987384	22987384	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:22987384C>T	uc001bgd.2	+	3	399	c.267C>T	c.(265-267)GTC>GTT	p.V89V		NM_000491	NP_000482	P02746	C1QB_HUMAN	complement component 1, q subcomponent, B chain	89	Collagen-like 2.				complement activation, classical pathway|innate immune response	collagen|complement component C1 complex				breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.06e-27)|Colorectal(126;1.58e-07)|GBM - Glioblastoma multiforme(114;6.72e-06)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000551)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CAGGAAAAGTCGGCCCCAAGG	0.617000													17	15					0	0	1	0	0
KDM1A	23028	broad.mit.edu	37	1	23405551	23405551	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:23405551C>G	uc001bgi.2	+	15	2013	c.1864C>G	c.(1864-1866)CTC>GTC	p.L622V	KDM1A_uc001bgj.2_Missense_Mutation_p.L646V	NM_015013	NP_055828	O60341	KDM1A_HUMAN	lysine-specific histone demethylase 1 isoform b	622	Demethylase activity.				blood coagulation|muscle cell development|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of protein binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nuclear chromatin	androgen receptor binding|chromatin binding|enzyme binding|flavin adenine dinucleotide binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-K9 specific)|ligand-dependent nuclear receptor transcription coactivator activity|MyoD binding|oxidoreductase activity|p53 binding|transcription regulatory region DNA binding			ovary(1)|lung(1)	2						CGACGCAGTTCTCTGTACCCT	0.517000													42	139					0	0	1	0	0
TRIM63	84676	broad.mit.edu	37	1	26383786	26383786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:26383786C>T	uc001bli.1	-	7	1023	c.887G>A	c.(886-888)GGG>GAG	p.G296E		NM_032588	NP_115977	Q969Q1	TRI63_HUMAN	muscle specific ring finger protein 1	296	COS.					cytoplasm|microtubule|nucleus	ligase activity|signal transducer activity|titin binding|zinc ion binding			kidney(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000154)|all_lung(284;0.00021)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;9.15e-26)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000767)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		CTCTGTCTTCCCCAGCTGGCA	0.537000													25	82					0	0	1	0	0
UBXN11	91544	broad.mit.edu	37	1	26620781	26620782	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:26620781_26620782GG>TA	uc001blw.2	-	9	746_747	c.473_474CC>TA	c.(472-474)CCC>CTA	p.P158L	UBXN11_uc001blz.1_Missense_Mutation_p.P125L|UBXN11_uc001blv.2_Missense_Mutation_p.P120L|UBXN11_uc001bly.2_Intron|UBXN11_uc001blx.2_Intron|UBXN11_uc001bma.2_Missense_Mutation_p.P125L|UBXN11_uc001bmb.1_Missense_Mutation_p.P158L|UBXN11_uc010ofb.1_Missense_Mutation_p.P83L|UBXN11_uc010ofc.1_5'UTR	NM_183008	NP_892120	Q5T124	UBX11_HUMAN	socius isoform 2	158						cytoplasm|cytoskeleton				ovary(1)	1						CCTGGTCCATGGGCTCGCCCAC	0.614000													65	80					0	0	1	0	0
RPS6KA1	6195	broad.mit.edu	37	1	26877926	26877926	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:26877926C>T	uc001bmr.1	+	5	509	c.346C>T	c.(346-348)CTG>TTG	p.L116L	RPS6KA1_uc010ofe.1_Silent_p.L24L|RPS6KA1_uc010off.1_Silent_p.L100L|RPS6KA1_uc001bms.1_Silent_p.L125L|RPS6KA1_uc009vsl.1_5'UTR	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	116	Protein kinase 1.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		GAGAGACATCCTGGCTGATGT	0.567000													35	129					0	0	1	0	0
SLC9A1	6548	broad.mit.edu	37	1	27480641	27480641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:27480641G>A	uc001bnm.2	-	1	811	c.185C>T	c.(184-186)ACC>ATC	p.T62I	SLC9A1_uc010ofk.1_5'UTR|SLC9A1_uc001bnn.2_Missense_Mutation_p.T62I	NM_003047	NP_003038	P19634	SL9A1_HUMAN	solute carrier family 9, isoform A1	62	Extracellular (Potential).				regulation of pH	integral to membrane	sodium:hydrogen antiporter activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;2.19e-50)|OV - Ovarian serous cystadenocarcinoma(117;1.8e-29)|Colorectal(126;7.61e-09)|COAD - Colon adenocarcinoma(152;9.32e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000521)|KIRC - Kidney renal clear cell carcinoma(1967;0.00079)|STAD - Stomach adenocarcinoma(196;0.00125)|READ - Rectum adenocarcinoma(331;0.046)	Amiloride(DB00594)	CGGTGGAGCGGTGGTGACATC	0.607000													66	165					0	0	1	0	0
LAPTM5	7805	broad.mit.edu	37	1	31211796	31211796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:31211796C>T	uc001bsc.2	-	5	592	c.501G>A	c.(499-501)ATG>ATA	p.M167I		NM_006762	NP_006753	Q13571	LAPM5_HUMAN	lysosomal protein transmembrane 5	167					transport	integral to plasma membrane|lysosomal membrane					0		Colorectal(325;0.0199)|Myeloproliferative disorder(586;0.0393)|all_neural(195;0.0966)|Medulloblastoma(700;0.151)|Ovarian(437;0.192)		STAD - Stomach adenocarcinoma(196;0.0196)|READ - Rectum adenocarcinoma(331;0.0649)		CCATGTGGTTCATGGACTTGA	0.388000													17	19					0	0	1	0	0
PUM1	9698	broad.mit.edu	37	1	31423046	31423046	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:31423046C>A	uc001bsi.1	-	17	2897	c.2784G>T	c.(2782-2784)TTG>TTT	p.L928F	PUM1_uc001bsf.1_Missense_Mutation_p.L594F|PUM1_uc001bsg.1_Missense_Mutation_p.L662F|PUM1_uc001bsh.1_Missense_Mutation_p.L928F|PUM1_uc001bsj.1_Missense_Mutation_p.L902F|PUM1_uc010oga.1_Missense_Mutation_p.L784F|PUM1_uc001bsk.1_Missense_Mutation_p.L964F|PUM1_uc010ogb.1_Missense_Mutation_p.L869F|SNORD103A_uc009vts.1_5'Flank	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	928	PUM-HD.|Pumilio 3.				cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		TCTGTAGTGCCAATGACAGGA	0.438000													28	102					2.08457e-15	2.11216e-15	1	1	0
SNRNP40	9410	broad.mit.edu	37	1	31762188	31762188	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:31762188C>T	uc001bso.2	-	4	490	c.444G>A	c.(442-444)AAG>AAA	p.K148K	SNRNP40_uc010oge.1_Silent_p.K148K	NM_004814	NP_004805	Q96DI7	SNR40_HUMAN	WD repeat domain 57 (U5 snRNP specific)	148						catalytic step 2 spliceosome|cytoplasm|nucleoplasm|small nucleolar ribonucleoprotein complex|U5 snRNP	protein binding				0						AAGTATGTCCCTTTAGCCTTT	0.458000													169	102					0	0	1	0	0
LCK	3932	broad.mit.edu	37	1	32745809	32745809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:32745809C>T	uc001bux.2	+	12	1463	c.1325C>T	c.(1324-1326)CCA>CTA	p.P442L	LCK_uc001buy.2_Missense_Mutation_p.P442L|LCK_uc001buz.2_Missense_Mutation_p.P472L|LCK_uc010ohc.1_Missense_Mutation_p.P486L|LCK_uc001bva.2_Missense_Mutation_p.P449L	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	442	Protein kinase.				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	ATCCCTTACCCAGGTTAGAGC	0.498000			T	TRB@	T-ALL								17	95					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34554741	34554741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:34554741C>T	uc001bxn.1	-	2	150	c.121G>A	c.(121-123)GGG>AGG	p.G41R	CSMD2_uc001bxm.1_Missense_Mutation_p.G81R	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	41	CUB 1.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TATGGGAACCCTGGGCTCTCA	0.537000													20	66					0	0	1	0	0
ZMYM6	9204	broad.mit.edu	37	1	35452956	35452956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:35452956C>T	uc001byh.2	-	16	3955	c.3727G>A	c.(3727-3729)GGA>AGA	p.G1243R	uc001byd.3_5'Flank|uc001bye.2_5'Flank|ZMYM6_uc001byf.1_Intron|ZMYM6_uc010oht.1_Missense_Mutation_p.G1146R	NM_007167	NP_009098	O95789	ZMYM6_HUMAN	zinc finger protein 258	1243					multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.13)				GCTTGTAATCCTAAATCTGAA	0.333000													29	111					0	0	1	0	0
THRAP3	9967	broad.mit.edu	37	1	36752382	36752382	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:36752382C>T	uc001cae.3	+	4	775	c.551C>T	c.(550-552)TCT>TTT	p.S184F	THRAP3_uc001caf.3_Missense_Mutation_p.S184F|THRAP3_uc001cag.1_Missense_Mutation_p.S184F	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	184	Ser-rich.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				AAGTCCTCTTCTAAGGATAGC	0.527000			T	USP6	aneurysmal bone cysts								65	199					0	0	1	0	0
LSM10	84967	broad.mit.edu	37	1	36859378	36859378	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:36859378G>A	uc001cao.1	-	2	503	c.353C>T	c.(352-354)CCC>CTC	p.P118L		NM_032881	NP_116270	Q969L4	LSM10_HUMAN	LSM10, U7 small nuclear RNA associated	118					histone mRNA metabolic process|mRNA processing|RNA splicing|S phase of mitotic cell cycle|termination of RNA polymerase II transcription	Cajal body|U7 snRNP	histone pre-mRNA DCP binding|protein binding				0		Myeloproliferative disorder(586;0.0393)				GTTTTTTGGGGGAAATTCCCA	0.577000													36	148					0	0	1	0	0
GJA9	81025	broad.mit.edu	37	1	39340268	39340268	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:39340268C>T	uc001cct.1	-	2	1784	c.1503G>A	c.(1501-1503)ACG>ACA	p.T501T	RRAGC_uc001ccr.2_5'Flank|MYCBP_uc001ccs.2_5'Flank	NM_030772	NP_110399	P57773	CXA9_HUMAN	gap junction protein, alpha 9, 59kDa	501	Cytoplasmic (Potential).				cell communication	connexon complex|integral to membrane					0	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;8.23e-17)			TGAGATTGTTCGTTAGGGACA	0.448000													151	58					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39798475	39798475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:39798475C>T	uc010oiu.1	+	1	1666	c.1535C>T	c.(1534-1536)TCT>TTT	p.S512F	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	2077					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ACAGAAGATTCTTCTGTAGAG	0.373000													20	24					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39826491	39826491	+	Missense_Mutation	SNP	C	T	T	rs138693822	by1000genomes	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:39826491C>T	uc010oiu.1	+	12	7722	c.7591C>T	c.(7591-7593)CTC>TTC	p.L2531F	MACF1_uc010ois.1_Missense_Mutation_p.L2029F|MACF1_uc001cda.1_Missense_Mutation_p.L1937F|MACF1_uc001cdc.1_Missense_Mutation_p.L1116F|MACF1_uc001cdb.1_Missense_Mutation_p.L1116F	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	4096	Spectrin 2.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CTTCCAAAGCCTCTCCTATAG	0.423000													10	49					0	0	1	0	0
SLC2A1	6513	broad.mit.edu	37	1	43396734	43396734	+	Silent	SNP	G	A	A	rs147319894		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:43396734G>A	uc001cik.2	-	3	783	c.258C>T	c.(256-258)TTC>TTT	p.F86F		NM_006516	NP_006507	P11166	GTR1_HUMAN	solute carrier family 2 (facilitated glucose	86	Helical; Name=2; (Potential).				carbohydrate metabolic process|energy reserve metabolic process|regulation of insulin secretion|water-soluble vitamin metabolic process	integral to membrane|melanosome|membrane fraction|midbody	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			central_nervous_system(2)|pancreas(2)|ovary(1)	5	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0122)			Etomidate(DB00292)	AGCGGTTAACGAAAAGGCCCA	0.622000											OREG0013425	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	45					0	0	1	0	0
KLF17	128209	broad.mit.edu	37	1	44595524	44595524	+	Missense_Mutation	SNP	C	G	G	rs138244178	byFrequency	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:44595524C>G	uc001clp.2	+	2	639	c.581C>G	c.(580-582)CCG>CGG	p.P194R	KLF17_uc009vxf.1_Missense_Mutation_p.P157R	NM_173484	NP_775755	Q5JT82	KLF17_HUMAN	zinc finger protein 393	194					regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					TTGTTGGGCCCGACTGTGCCT	0.597000													37	127					0	0	1	0	0
PTCH2	8643	broad.mit.edu	37	1	45288156	45288156	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:45288156G>A	uc010olf.1	-	22	3555	c.3543C>T	c.(3541-3543)CCC>CCT	p.P1181P	PTCH2_uc010olg.1_Silent_p.P879P	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	1181	Cytoplasmic (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					GGGACCAAGGGGGCTCATCAG	0.627000									Basal_Cell_Nevus_syndrome				71	42					0	0	1	0	0
C1orf190	541468	broad.mit.edu	37	1	46685580	46685580	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:46685580C>T	uc010oma.1	+	2	501	c.408C>T	c.(406-408)ACC>ACT	p.T136T	POMGNT1_uc001cpg.2_5'UTR|POMGNT1_uc001cpf.2_5'UTR	NM_001013615	NP_001013633	Q96LR2	CA190_HUMAN	hypothetical protein LOC541468	136					positive regulation of cytokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm				ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(166;0.155)					CCAGCACCACCGACCGGCTGG	0.642000													22	86					0	0	1	0	0
OSBPL9	114883	broad.mit.edu	37	1	52231614	52231614	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:52231614A>G	uc001cst.2	+	12	918	c.899A>G	c.(898-900)GAA>GGA	p.E300G	OSBPL9_uc001css.2_Missense_Mutation_p.E305G|OSBPL9_uc001csx.2_RNA|OSBPL9_uc009vza.2_Missense_Mutation_p.E301G|OSBPL9_uc001csu.2_Missense_Mutation_p.E310G|OSBPL9_uc001csv.2_Missense_Mutation_p.E135G|OSBPL9_uc001csw.2_Missense_Mutation_p.E287G|OSBPL9_uc001csy.2_Missense_Mutation_p.E122G|OSBPL9_uc001csz.2_Missense_Mutation_p.E122G|OSBPL9_uc001cta.2_Missense_Mutation_p.E190G|OSBPL9_uc001ctb.2_Missense_Mutation_p.E85G	NM_024586	NP_078862	Q96SU4	OSBL9_HUMAN	oxysterol binding protein-like 9 isoform e	300					lipid transport		lipid binding			central_nervous_system(1)	1						GATGCTGATGAATTCCATCAA	0.378000													23	71					0	0	1	0	0
ZYG11B	79699	broad.mit.edu	37	1	53245583	53245584	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:53245583_53245584GG>AA	uc001cuj.2	+	4	1205_1206	c.1010_1011GG>AA	c.(1009-1011)CGG>CAA	p.R337Q	ZYG11B_uc009vzg.2_RNA|ZYG11B_uc010onj.1_Missense_Mutation_p.R328Q	NM_024646	NP_078922	Q9C0D3	ZY11B_HUMAN	zyg-11 homolog B	337							protein binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						TACAGTGAACGGGCATTCTTTG	0.386000													78	49					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55151984	55151984	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:55151984G>A	uc010ooe.1	+	15	2898	c.2574G>A	c.(2572-2574)GTG>GTA	p.V858V	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Silent_p.V426V|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Silent_p.V376V|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_Intron|C1orf175_uc010oog.1_Silent_p.V858V|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Silent_p.V60V|C1orf175_uc001cxu.2_Silent_p.V4V	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	858						integral to membrane	binding				0						TGGGCCGTGTGAGGCGCATCT	0.647000													24	73					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57417739	57417739	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:57417739C>T	uc001cyp.2	-	5	715	c.648G>A	c.(646-648)GTG>GTA	p.V216V	C8B_uc010oon.1_Silent_p.V154V|C8B_uc010ooo.1_Silent_p.V164V	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	216	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TGTAGCTTTCCACATTGTAGG	0.299000													75	45					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57417841	57417841	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:57417841G>A	uc001cyp.2	-	5	613	c.546C>T	c.(544-546)TTC>TTT	p.F182F	C8B_uc010oon.1_Silent_p.F120F|C8B_uc010ooo.1_Silent_p.F130F	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	182	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						AACTGTTTGTGAACAAATTTA	0.443000													151	88					0	0	1	0	0
DAB1	1600	broad.mit.edu	37	1	57476829	57476829	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:57476829C>A	uc001cys.1	-	15	2235	c.1561G>T	c.(1561-1563)GAG>TAG	p.E521*	DAB1_uc001cyt.1_Nonsense_Mutation_p.E519*|DAB1_uc001cyq.1_Nonsense_Mutation_p.E519*|DAB1_uc001cyr.1_Nonsense_Mutation_p.E435*|DAB1_uc009vzw.1_Nonsense_Mutation_p.E503*|DAB1_uc009vzx.1_Nonsense_Mutation_p.E521*	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	554					cell differentiation|nervous system development					skin(2)|ovary(1)	3						GCTTCTTGCTCTTCGCTTTTG	0.413000													66	49					1.37693e-34	1.40821e-34	1	1	0
LEPR	3953	broad.mit.edu	37	1	66102239	66102239	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:66102239C>T	uc001dci.2	+	20	3241	c.3039C>T	c.(3037-3039)TTC>TTT	p.F1013F	LEPR_uc009waq.2_3'UTR	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	1013	Cytoplasmic (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		CCAAGTGCTTCTCTAGCAAAA	0.403000													14	39					0	0	1	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74492517	74492517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:74492517G>A	uc001dfy.3	-	8	2047	c.1855C>T	c.(1855-1857)CCC>TCC	p.P619S	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	619										ovary(2)	2						AGTCCATTGGGAACTTTAAAG	0.289000													16	8					0	0	1	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74506959	74506959	+	Silent	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:74506959A>G	uc001dfy.3	-	7	1848	c.1656T>C	c.(1654-1656)GTT>GTC	p.V552V	LRRIQ3_uc001dfz.3_Intron	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	552										ovary(2)	2						GTTTTTGCTTAACAATCAGGC	0.313000													6	23					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75038628	75038628	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:75038628C>T	uc001dgg.2	-	14	2985	c.2766G>A	c.(2764-2766)CTG>CTA	p.L922L		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	922	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CTGCCTCTCTCAGGGCTGCTA	0.537000													47	157					0	0	1	0	0
ST6GALNAC3	256435	broad.mit.edu	37	1	76877768	76877768	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:76877768G>A	uc001dhh.2	+	3	452	c.289G>A	c.(289-291)GAG>AAG	p.E97K	ST6GALNAC3_uc001dhg.3_Missense_Mutation_p.E97K|ST6GALNAC3_uc010orh.1_Missense_Mutation_p.E32K	NM_152996	NP_694541	Q8NDV1	SIA7C_HUMAN	sialyltransferase 7C isoform 1	97	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			ovary(3)|skin(2)	5						GGTGGGAAATGAGATAGATCG	0.473000													21	65					0	0	1	0	0
USP33	23032	broad.mit.edu	37	1	78180377	78180377	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:78180377G>A	uc001dht.2	-	20	2577	c.2230C>T	c.(2230-2232)CGA>TGA	p.R744*	USP33_uc001dhs.2_Nonsense_Mutation_p.R465*|USP33_uc001dhu.2_Nonsense_Mutation_p.R713*|USP33_uc001dhv.2_Nonsense_Mutation_p.R549*|USP33_uc001dhw.2_Nonsense_Mutation_p.R736*	NM_015017	NP_055832	Q8TEY7	UBP33_HUMAN	ubiquitin specific protease 33 isoform 1	744	DUSP 1.				axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|VCB complex	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(2)|ovary(1)	3						AGCCACTGTCGAGAAATATAA	0.373000													49	27					0	0	1	0	0
GTF2B	2959	broad.mit.edu	37	1	89329731	89329732	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:89329731_89329732GG>AA	uc001dmo.3	-	3	309_310	c.190_191CC>TT	c.(190-192)CCA>TTA	p.P64L	GTF2B_uc009wcw.1_Intron	NM_001514	NP_001505	Q00403	TF2B_HUMAN	general transcription factor IIB	64					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	nucleoplasm	thyroid hormone receptor binding|translation initiation factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0131)|Epithelial(280;0.0255)		AACTCGAGATGGATCTTTTGTT	0.401000													28	92					0	0	1	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94643672	94643672	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:94643672C>T	uc001dqj.3	-	21	2901	c.2532G>A	c.(2530-2532)GTG>GTA	p.V844V	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Silent_p.V410V	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	844	Rho-GAP.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		GTCCAAATATCACCCCCAAGT	0.423000													72	46					0	0	1	0	0
SLC44A3	126969	broad.mit.edu	37	1	95290162	95290162	+	Silent	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:95290162T>C	uc001dqv.3	+	3	356	c.249T>C	c.(247-249)CCT>CCC	p.P83P	SLC44A3_uc001dqx.3_Silent_p.P83P|SLC44A3_uc010otq.1_Silent_p.P47P|SLC44A3_uc010otr.1_Silent_p.P47P|SLC44A3_uc001dqw.3_Silent_p.P35P|SLC44A3_uc010ots.1_Silent_p.P35P|SLC44A3_uc009wds.2_5'UTR|SLC44A3_uc010ott.1_Silent_p.P35P|SLC44A3_uc010otu.1_5'Flank	NM_001114106	NP_001107578	Q8N4M1	CTL3_HUMAN	solute carrier family 44, member 3 isoform 1	83						integral to membrane|plasma membrane	choline transmembrane transporter activity			kidney(1)	1		all_lung(203;0.000712)|Lung NSC(277;0.00316)		all cancers(265;0.039)|Epithelial(280;0.124)	Choline(DB00122)	AAGGGGCCCCTCTTTCAGGGC	0.488000													135	72					0	0	1	0	0
LPPR5	163404	broad.mit.edu	37	1	99380380	99380380	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:99380380G>A	uc001dsb.2	-	5	1117	c.895C>T	c.(895-897)CGA>TGA	p.R299*	LPPR5_uc001dsc.2_Nonsense_Mutation_p.R299*	NM_001037317	NP_001032394	Q32ZL2	LPPR5_HUMAN	phosphatidic acid phosphatase type 2d isoform 1	299						integral to membrane	hydrolase activity				0						CTTTCTACTCGAGGAATGCTG	0.358000													54	30					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103467999	103467999	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:103467999C>T	uc001dul.2	-	23	2400	c.2082G>A	c.(2080-2082)GGG>GGA	p.G694G	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Silent_p.G706G|COL11A1_uc001dun.2_Silent_p.G655G|COL11A1_uc009weh.2_Silent_p.G578G	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	694	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GTCCTGGATTCCCTTGTTGAC	0.423000													5	11					0	0	1	0	0
SLC25A24	29957	broad.mit.edu	37	1	108700206	108700206	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:108700206C>T	uc001dvn.3	-	5	761	c.547G>A	c.(547-549)GAA>AAA	p.E183K	SLC25A24_uc001dvm.2_Missense_Mutation_p.E164K	NM_013386	NP_037518	Q6NUK1	SCMC1_HUMAN	solute carrier family 25 member 24 isoform 1	183	Mitochondrial intermembrane (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding			ovary(1)	1		all_epithelial(167;3.72e-05)|all_lung(203;0.000567)|Lung NSC(277;0.0011)|Melanoma(281;0.211)		Colorectal(144;0.0345)|Lung(183;0.0971)|COAD - Colon adenocarcinoma(174;0.127)|Epithelial(280;0.134)		TCCGTGAATTCATCTGGAATA	0.438000													85	53					0	0	1	0	0
GNAT2	2780	broad.mit.edu	37	1	110148980	110148980	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:110148980T>A	uc001dya.2	-	5	753	c.540A>T	c.(538-540)AAA>AAT	p.K180N		NM_005272	NP_005263	P19087	GNAT2_HUMAN	guanine nucleotide binding protein, alpha	180	GTP (By similarity).				detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|rhodopsin mediated phototransduction	heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment membrane	G-protein beta/gamma-subunit complex binding|G-protein coupled photoreceptor activity|G-protein-coupled receptor binding|GTP binding|GTPase activity				0		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0422)|Colorectal(144;0.108)|Epithelial(280;0.125)|all cancers(265;0.129)|LUSC - Lung squamous cell carcinoma(189;0.227)		TGCCCGTGGTTTTGACTCTGG	0.458000													116	66					0	0	1	0	0
KCND3	3752	broad.mit.edu	37	1	112525084	112525084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:112525084C>T	uc001ebu.1	-	2	745	c.265G>A	c.(265-267)GAG>AAG	p.E89K	KCND3_uc001ebv.1_Missense_Mutation_p.E89K	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	89	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		CGGAACACCTCGGGGTCCCGG	0.622000													55	175					0	0	1	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458000	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			188	122					1.03563e-105	1.07132e-105	1	1	0
ATP1A1	476	broad.mit.edu	37	1	116941601	116941601	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:116941601C>T	uc001ege.2	+	17	2682	c.2343C>T	c.(2341-2343)ACC>ACT	p.T781T	ATP1A1_uc010owv.1_Silent_p.T750T|ATP1A1_uc010oww.1_Silent_p.T781T|ATP1A1_uc010owx.1_Silent_p.T750T|C1orf203_uc009whb.2_Intron|ATP1A1_uc001egh.2_5'Flank	NM_000701	NP_000692	P05023	AT1A1_HUMAN	Na+/K+ -ATPase alpha 1 subunit isoform a	781	Helical; (Potential).				ATP biosynthetic process	melanosome|sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;1.28e-06)|all_epithelial(167;3.48e-07)|all_lung(203;2.64e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0164)|LUSC - Lung squamous cell carcinoma(189;0.0548)|Colorectal(144;0.0825)|COAD - Colon adenocarcinoma(174;0.127)|all cancers(265;0.24)	Acetyldigitoxin(DB00511)|Almitrine(DB01430)|Aluminium(DB01370)|Bepridil(DB01244)|Bretylium(DB01158)|Captopril(DB01197)|Deslanoside(DB01078)|Diazoxide(DB01119)|Digitoxin(DB01396)|Digoxin(DB00390)|Esomeprazole(DB00736)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Ouabain(DB01092)|Pantoprazole(DB00213)|Trichlormethiazide(DB01021)	ATACCTTAACCAGTAACATTC	0.413000													39	128					0	0	1	0	0
WARS2	10352	broad.mit.edu	37	1	119575764	119575764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:119575764G>A	uc001ehn.2	-	6	881	c.853C>T	c.(853-855)CTC>TTC	p.L285F	WARS2_uc010oxf.1_Missense_Mutation_p.L191F|WARS2_uc001ehm.2_3'UTR|WARS2_uc010oxg.1_Missense_Mutation_p.L228F|WARS2_uc010oxh.1_3'UTR	NM_015836	NP_056651	Q9UGM6	SYWM_HUMAN	mitochondrial tryptophanyl tRNA synthetase 2	285					tryptophanyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|tryptophan-tRNA ligase activity				0	all_neural(166;0.187)	all_lung(203;2.48e-06)|Lung NSC(69;1.74e-05)|all_epithelial(167;0.000564)		Lung(183;0.0629)	L-Tryptophan(DB00150)	TCCACGGAGAGCCCCGTCACC	0.627000													90	43					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	148891612	148891612	+	RNA	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:148891612C>T	uc009wkv.1	+	9		c.914C>T								Homo sapiens cDNA, FLJ17483.																		AGTTACAGTTCCAAGAAGAAA	0.413000													4	154					0	0	1	0	0
FCGR1A	2209	broad.mit.edu	37	1	149760129	149760129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:149760129G>A	uc001esp.3	+	4	565	c.515G>A	c.(514-516)GGA>GAA	p.G172E	HIST2H2BF_uc010pbj.1_Intron|FCGR1A_uc009wlg.2_RNA|FCGR1A_uc009wlh.1_RNA	NM_000566	NP_000557	P12314	FCGR1_HUMAN	Fc fragment of IgG, high affinity Ia, receptor	172	Ig-like C2-type 2.|Extracellular (Potential).				interferon-gamma-mediated signaling pathway|phagocytosis, engulfment	integral to membrane|plasma membrane	IgG binding|receptor activity|receptor signaling protein activity			ovary(1)	1	Breast(34;0.0124)|all_hematologic(923;0.127)				Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Methyl aminolevulinate(DB00992)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Porfimer(DB00707)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TCAGGCATGGGAAAGCATCGC	0.393000													69	128					0	0	1	0	0
SETDB1	9869	broad.mit.edu	37	1	150922936	150922936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:150922936C>T	uc001evu.2	+	13	1773	c.1583C>T	c.(1582-1584)TCA>TTA	p.S528L	SETDB1_uc009wmf.2_Missense_Mutation_p.S529L|SETDB1_uc001evv.2_Missense_Mutation_p.S528L|SETDB1_uc009wmg.1_Missense_Mutation_p.S528L	NM_001145415	NP_001138887	Q15047	SETB1_HUMAN	SET domain, bifurcated 1 isoform 1	528					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|Golgi apparatus|nucleus|plasma membrane	DNA binding|histone-lysine N-methyltransferase activity|protein binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|BRCA - Breast invasive adenocarcinoma(12;0.0152)|LUSC - Lung squamous cell carcinoma(543;0.211)			ATTTGCAGATCACCTTTAGGC	0.547000													72	100					0	0	1	0	0
SETDB1	9869	broad.mit.edu	37	1	150923080	150923080	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:150923080A>G	uc001evu.2	+	13	1917	c.1727A>G	c.(1726-1728)CAT>CGT	p.H576R	SETDB1_uc009wmf.2_Missense_Mutation_p.H577R|SETDB1_uc001evv.2_Missense_Mutation_p.H576R|SETDB1_uc009wmg.1_Missense_Mutation_p.H576R	NM_001145415	NP_001138887	Q15047	SETB1_HUMAN	SET domain, bifurcated 1 isoform 1	576					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|Golgi apparatus|nucleus|plasma membrane	DNA binding|histone-lysine N-methyltransferase activity|protein binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|BRCA - Breast invasive adenocarcinoma(12;0.0152)|LUSC - Lung squamous cell carcinoma(543;0.211)			TACTTACCTCATGTCTGCAGC	0.582000													52	117					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152185671	152185671	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:152185671A>G	uc001ezt.1	-	3	8510	c.8434T>C	c.(8434-8436)TAT>CAT	p.Y2812H		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2812					keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTTTGCAATAAGAATACCCA	0.483000													6	175					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152279071	152279071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:152279071C>T	uc001ezu.1	-	3	8327	c.8291G>A	c.(8290-8292)GGA>GAA	p.G2764E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2764	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATGGCGGGATCCTTGTCTTCC	0.577000									Ichthyosis				82	364					0	0	1	0	0
KPRP	448834	broad.mit.edu	37	1	152733041	152733041	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:152733041G>A	uc001fal.1	+	2	1035	c.977G>A	c.(976-978)CGA>CAA	p.R326Q		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	326	Pro-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCAAGTGCCGAATCGAGATT	0.617000													26	64					0	0	1	0	0
PGLYRP4	57115	broad.mit.edu	37	1	153317847	153317847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:153317847C>T	uc001fbo.2	-	4	216	c.151G>A	c.(151-153)GAT>AAT	p.D51N	PGLYRP4_uc001fbp.2_Splice_Site_p.D47_splice	NM_020393	NP_065126	Q96LB8	PGRP4_HUMAN	peptidoglycan recognition protein-I-beta	51					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)|skin(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTGGAGACATCTGTGGGAAGG	0.587000													79	117					0	0	1	0	0
GATAD2B	57459	broad.mit.edu	37	1	153791335	153791335	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:153791335C>T	uc001fdb.3	-	4	773	c.529G>A	c.(529-531)GAA>AAA	p.E177K		NM_020699	NP_065750	Q8WXI9	P66B_HUMAN	GATA zinc finger domain containing 2B	177	CR1.|Potential.					nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_lung(78;1.34e-32)|Lung NSC(65;1.04e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			AGTCGGGCTTCTTCCAATCGT	0.483000													37	91					0	0	1	0	0
NUP210L	91181	broad.mit.edu	37	1	153965405	153965405	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:153965405A>G	uc001fdw.2	-	40	5645	c.5573T>C	c.(5572-5574)TTT>TCT	p.F1858S	NUP210L_uc009woq.2_Missense_Mutation_p.F767S|NUP210L_uc010peh.1_Missense_Mutation_p.F1706S	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1858				FNSTSSPPHFMSLQP -> LTPQVLPLTS (in Ref. 1; BAC86345).		integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			TGTGGAGTTAAAAAAACCTAG	0.438000													90	78					0	0	1	0	0
HAX1	10456	broad.mit.edu	37	1	154247884	154247884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:154247884C>T	uc001fes.2	+	6	840	c.679C>T	c.(679-681)CGG>TGG	p.R227W	HAX1_uc001fet.2_Missense_Mutation_p.R179W|HAX1_uc010peo.1_Missense_Mutation_p.R235W|HAX1_uc009wou.2_Missense_Mutation_p.R152W|HAX1_uc009wov.2_Missense_Mutation_p.R201W	NM_006118	NP_006109	O00165	HAX1_HUMAN	HCLS1 associated protein X-1 isoform a	227	Involved in PKD2 binding.|Involved in ATP2A2 binding.|Involved in HCLS1 binding.|Involved in GNA13 binding.|Required for localization in sarcoplasmic reticulum (By similarity).					actin cytoskeleton|cytoplasmic membrane-bounded vesicle|lamellipodium|mitochondrion|nuclear membrane|sarcoplasmic reticulum|soluble fraction	interleukin-1 binding|protein N-terminus binding				0	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			GGAGGAGCGCCGGACTGTGGT	0.498000									Kostmann_syndrome				86	177					0	0	1	0	0
SHE	126669	broad.mit.edu	37	1	154456751	154456751	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:154456751C>T	uc001ffb.2	-	6	1449	c.1362G>A	c.(1360-1362)CTG>CTA	p.L454L	SHE_uc001ffc.2_RNA	NM_001010846	NP_001010846	Q5VZ18	SHE_HUMAN	Src homology 2 domain containing E	454	SH2.									breast(3)|ovary(2)|central_nervous_system(1)	6	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			TTGTCTGATTCAGTGTGTATT	0.433000													36	34					0	0	1	0	0
SHC1	6464	broad.mit.edu	37	1	154942595	154942595	+	Silent	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:154942595G>C	uc001ffv.2	-	1	629	c.408C>G	c.(406-408)CGC>CGG	p.R136R	SHC1_uc001ffz.1_5'Flank|SHC1_uc001ffw.2_Silent_p.R136R|SHC1_uc001ffx.2_Silent_p.R26R|SHC1_uc001ffy.2_Silent_p.R26R	NM_183001	NP_892113	P29353	SHC1_HUMAN	SHC-transforming protein 1 isoform 1	136					activation of MAPK activity|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|positive regulation of DNA replication|Ras protein signal transduction|regulation of epidermal growth factor receptor activity|regulation of growth	cytosol|mitochondrial matrix|Shc-EGFR complex	epidermal growth factor receptor binding|insulin receptor binding|insulin-like growth factor receptor binding|phospholipid binding|protein binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(1)|skin(1)	2	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			AGCTCCCGTGGCGGGTCCACT	0.647000													54	81					0	0	1	0	0
GBA	2629	broad.mit.edu	37	1	155206068	155206068	+	Nonsense_Mutation	SNP	G	A	A	rs121908309		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:155206068G>A	uc001fjh.2	-	8	1342	c.1192C>T	c.(1192-1194)CGA>TGA	p.R398*	RAG1AP1_uc010pey.1_Intron|GBA_uc010pfw.1_Nonsense_Mutation_p.R285*|GBA_uc010pfx.1_Nonsense_Mutation_p.R349*|GBA_uc001fji.2_Nonsense_Mutation_p.R398*|GBA_uc001fjj.2_Nonsense_Mutation_p.R398*|GBA_uc001fjk.2_Nonsense_Mutation_p.R398*|GBA_uc001fjl.2_Nonsense_Mutation_p.R398*|GBA_uc010pfy.1_Nonsense_Mutation_p.R311*	NM_000157	NP_000148	P04062	GLCM_HUMAN	glucocerebrosidase precursor	398			R -> Q (in GD; mild).		carbohydrate metabolic process|cell death|cellular response to tumor necrosis factor|ceramide biosynthetic process|glucosylceramide catabolic process|lysosome organization|negative regulation of interleukin-6 production|negative regulation of MAP kinase activity|positive regulation of protein dephosphorylation|sphingosine biosynthetic process|termination of signal transduction	lysosomal lumen|lysosomal membrane	cation binding|glucosylceramidase activity|receptor binding			ovary(1)|skin(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)		Alglucerase(DB00088)|Imiglucerase(DB00053)	TGCATCCCTCGATCCCAGGAG	0.572000									Gaucher_disease_type_I				21	44					0	0	1	0	0
PAQR6	79957	broad.mit.edu	37	1	156216477	156216478	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:156216477_156216478GG>AA	uc001fnu.1	-	2	115_116	c.45_46CC>TT	c.(43-48)GTCCCC>GTTTCC	p.P16S	PAQR6_uc010phf.1_Intron|PAQR6_uc001fny.1_Intron|PAQR6_uc001fnv.1_Intron|PAQR6_uc010phg.1_Intron|PAQR6_uc001fnx.1_5'UTR|PAQR6_uc001fnw.1_5'UTR|PAQR6_uc001fnz.1_5'UTR|PAQR6_uc010phh.1_Missense_Mutation_p.P16S|PAQR6_uc001foa.1_5'UTR|PAQR6_uc001fob.1_RNA	NM_198406	NP_940798	Q6TCH4	PAQR6_HUMAN	progestin and adipoQ receptor family member VI	16	Cytoplasmic (Potential).					integral to membrane	receptor activity				0	Hepatocellular(266;0.158)					CTCACCCGGGGGACCTGGTGGA	0.589000													35	56					0	0	1	0	0
C1orf85	112770	broad.mit.edu	37	1	156263217	156263217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:156263217G>A	uc001foh.2	-	5	962	c.949C>T	c.(949-951)CCC>TCC	p.P317S	C1orf85_uc001fof.3_5'Flank|C1orf85_uc001fog.1_Intron|C1orf85_uc001foi.2_Missense_Mutation_p.P268S|C1orf85_uc009wrx.2_Missense_Mutation_p.P250S|C1orf85_uc001foj.2_Missense_Mutation_p.P231S	NM_144580	NP_653181	Q8WWB7	NCUG1_HUMAN	kidney predominant protein NCU-G1 precursor	317	Lumenal (Potential).				positive regulation of transcription from RNA polymerase II promoter	cytosol|integral to membrane|lysosomal membrane|nucleus	ligand-dependent nuclear receptor activity|protein binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)	2	Hepatocellular(266;0.158)					CGGACAATGGGTGACTGGGGA	0.572000													44	40					0	0	1	0	0
RHBG	57127	broad.mit.edu	37	1	156351701	156351701	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:156351701G>A	uc010pho.1	+	6	983	c.945G>A	c.(943-945)GGG>GGA	p.G315G	RHBG_uc010phm.1_Silent_p.G153G|RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_Silent_p.G246G|RHBG_uc009wrz.2_Silent_p.G283G|RHBG_uc001for.2_Silent_p.G285G	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	315	Helical; (Potential).				transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					TCTTGGCTGGGACTGTCTCCA	0.562000													71	59					0	0	1	0	0
NES	10763	broad.mit.edu	37	1	156640164	156640165	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:156640164_156640165GG>AA	uc001fpq.2	-	4	3948_3949	c.3815_3816CC>TT	c.(3814-3816)CCC>CTT	p.P1272L		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	1272	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GGGGGCCCTCGGGGATCTCCCC	0.644000													37	86					0	0	1	0	0
PEAR1	375033	broad.mit.edu	37	1	156883768	156883768	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:156883768G>A	uc001fqj.1	+	22	2954	c.2838G>A	c.(2836-2838)ATG>ATA	p.M946I	PEAR1_uc001fqk.1_Missense_Mutation_p.M571I	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	946	Pro-rich.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					ACATGGAGATGAAAGGCCCTC	0.657000													23	26					0	0	1	0	0
FCRL4	83417	broad.mit.edu	37	1	157557226	157557226	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:157557226G>A	uc001fqw.2	-	5	823	c.687C>T	c.(685-687)TTC>TTT	p.F229F	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	229	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				CATCTCTGAAGAAGTTGAAGT	0.527000													159	134					0	0	1	0	0
OR6K6	128371	broad.mit.edu	37	1	158725283	158725283	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:158725283G>A	uc001fsw.1	+	1	678	c.678G>A	c.(676-678)GTG>GTA	p.V226V		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	226	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					TGGTCATTGTGGATGCCATCC	0.483000													31	48					0	0	1	0	0
OR6N2	81442	broad.mit.edu	37	1	158746477	158746477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:158746477G>A	uc010pir.1	-	1	949	c.949C>T	c.(949-951)CTT>TTT	p.L317F		NM_001005278	NP_001005278	Q8NGY6	OR6N2_HUMAN	olfactory receptor, family 6, subfamily N,	317	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(112;0.0378)					GAAAGTCAAAGATGAGCAAGA	0.308000													58	81					0	0	1	0	0
OR10J1	26476	broad.mit.edu	37	1	159410025	159410025	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:159410025C>T	uc010piv.1	+	1	477	c.477C>T	c.(475-477)GCC>GCT	p.A159A	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	159	Helical; Name=4; (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					TCCTGGGGGCCTGCAGCATTG	0.502000													71	128					0	0	1	0	0
FCRL6	343413	broad.mit.edu	37	1	159779373	159779373	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:159779373C>T	uc001fud.3	+	5	828	c.786C>T	c.(784-786)CTC>CTT	p.L262L	FCRL6_uc001fuc.2_Silent_p.L269L|FCRL6_uc009wsz.1_Silent_p.L167L|FCRL6_uc009wta.2_Silent_p.L262L	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	262	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					CCTCCCTCCTCTTCCCAGTGA	0.557000													32	40					0	0	1	0	0
ITLN1	55600	broad.mit.edu	37	1	160851992	160851992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:160851992C>T	uc001fxc.2	-	4	276	c.160G>A	c.(160-162)GGC>AGC	p.G54S		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	54	Fibrinogen C-terminal.				positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			AAATACAGGCCATCTGTAGAG	0.562000													47	61					0	0	1	0	0
RPL31P11	641311	broad.mit.edu	37	1	161654981	161654981	+	RNA	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:161654981C>T	uc001gbc.2	-	1		c.62G>A				NR_002595				Homo sapiens cDNA clone IMAGE:6574909, containing frame-shift errors.												0						TTCTTGCCACCCTTCTTTGCG	0.488000													8	11					0	0	1	0	0
FCRLA	84824	broad.mit.edu	37	1	161677099	161677099	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:161677099C>T	uc001gbe.2	+	1	338	c.96C>T	c.(94-96)TCC>TCT	p.S32S	FCRLA_uc001gbd.2_Silent_p.S32S|FCRLA_uc001gbf.2_Silent_p.S32S|FCRLA_uc001gbg.2_Silent_p.S32S|FCRLA_uc009wuo.2_Silent_p.S32S|FCRLA_uc009wup.2_Silent_p.S32S|FCRLA_uc009wuq.2_Silent_p.S32S	NM_032738	NP_116127	Q7L513	FCRLA_HUMAN	Fc receptor-like and mucin-like 1	15					cell differentiation	cytoplasm|extracellular region					0	all_cancers(52;2.55e-15)|all_hematologic(112;0.0359)		BRCA - Breast invasive adenocarcinoma(70;0.00301)			TCTACCTTTCCCTTGGTGTGC	0.493000													24	13					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167096626	167096626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:167096626G>A	uc001geb.1	+	5	2258	c.2258G>A	c.(2257-2259)AGC>AAC	p.S753N		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	753					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						TCTGTTGCAAGCATGAAGGCA	0.542000													65	109					0	0	1	0	0
ADCY10	55811	broad.mit.edu	37	1	167852752	167852752	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:167852752G>A	uc001ger.2	-	9	1241	c.943C>T	c.(943-945)CAG>TAG	p.Q315*	ADCY10_uc009wvk.2_Nonsense_Mutation_p.Q223*|ADCY10_uc010plj.1_Nonsense_Mutation_p.Q162*|ADCY10_uc009wvl.2_Nonsense_Mutation_p.Q314*|ADCY10_uc009wvm.2_RNA	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	315	Guanylate cyclase 2.				intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TAGGCATCCTGGATGGCTGGG	0.453000													71	96					0	0	1	0	0
GPR161	23432	broad.mit.edu	37	1	168066367	168066367	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:168066367G>A	uc001gfc.2	-	5	792	c.478C>T	c.(478-480)CTG>TTG	p.L160L	GPR161_uc001gfb.2_Silent_p.L28L|GPR161_uc010pll.1_Silent_p.L70L|GPR161_uc010plm.1_Silent_p.L46L|GPR161_uc009wvo.2_Silent_p.L177L|GPR161_uc001gfd.2_Silent_p.L160L|GPR161_uc010pln.1_Silent_p.L180L|GPR161_uc001gfe.1_Silent_p.L160L	NM_153832	NP_722561	Q8N6U8	GP161_HUMAN	G protein-coupled receptor 161 isoform 2	160	Helical; Name=4; (Potential).				multicellular organismal development	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_hematologic(923;0.215)					AGGGGTGGCAGGCAGCCGATG	0.572000													41	87					0	0	1	0	0
FASLG	356	broad.mit.edu	37	1	172628356	172628356	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:172628356C>T	uc001gis.2	+	1	172	c.15C>T	c.(13-15)TTC>TTT	p.F5F	FASLG_uc001git.2_Silent_p.F5F	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	5	Pro-rich.|Cytoplasmic (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						AGCAGCCCTTCAATTACCCAT	0.582000													43	59					0	0	1	0	0
CENPL	91687	broad.mit.edu	37	1	173776424	173776424	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:173776424G>A	uc001gje.3	-	3	615	c.401C>T	c.(400-402)CCG>CTG	p.P134L	CENPL_uc009wwg.2_Missense_Mutation_p.P8L|CENPL_uc001gjg.3_Missense_Mutation_p.P134L|CENPL_uc001gjf.3_Missense_Mutation_p.P134L	NM_033319	NP_201576	Q8N0S6	CENPL_HUMAN	centromere protein L isoform 2	134					mitotic prometaphase	chromosome, centromeric region|cytosol|nucleus					0						AAATGCTTCCGGGTCCCTTTG	0.363000													16	32					0	0	1	0	0
RC3H1	149041	broad.mit.edu	37	1	173939703	173939703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:173939703C>T	uc001gju.3	-	8	1361	c.1274G>A	c.(1273-1275)AGA>AAA	p.R425K	RC3H1_uc010pms.1_Missense_Mutation_p.R425K|RC3H1_uc001gjv.2_Missense_Mutation_p.R425K|RC3H1_uc010pmt.1_Missense_Mutation_p.R425K	NM_172071	NP_742068	Q5TC82	RC3H1_HUMAN	roquin	425	C3H1-type.				cytoplasmic mRNA processing body assembly|negative regulation of activated T cell proliferation|negative regulation of B cell proliferation|negative regulation of germinal center formation|negative regulation of T-helper cell differentiation|nuclear-transcribed mRNA catabolic process|regulation of mRNA stability|regulation of T cell receptor signaling pathway	cytoplasmic mRNA processing body|stress granule	mRNA 3'-UTR binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						GCATCCTCCTCTCTGCTTCAT	0.428000													129	135					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175362936	175362936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:175362936C>T	uc001gkp.1	-	4	1417	c.1336G>A	c.(1336-1338)GAA>AAA	p.E446K	TNR_uc009wwu.1_Missense_Mutation_p.E446K|TNR_uc010pmz.1_3'UTR	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	446	Fibronectin type-III 2.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AAGCTGATTTCCCACCCATCG	0.473000													89	208					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175375791	175375791	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:175375791G>A	uc001gkp.1	-	1	141	c.60C>T	c.(58-60)ATC>ATT	p.I20I	TNR_uc009wwu.1_Silent_p.I20I|TNR_uc010pmz.1_Silent_p.I20I	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	20					axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AGCCCAGAAGGATCAGGTTGA	0.552000													91	168					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176564117	176564117	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:176564117C>T	uc001gkz.2	+	3	2541	c.1377C>T	c.(1375-1377)AGC>AGT	p.S459S	PAPPA2_uc001gky.1_Silent_p.S459S|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	459	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGACAGCGAGCTTTGAGCCTG	0.537000													78	69					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176640206	176640206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:176640206G>A	uc001gkz.2	+	4	3256	c.2092G>A	c.(2092-2094)GGT>AGT	p.G698S	PAPPA2_uc001gky.1_Missense_Mutation_p.G698S|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	698	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						AGACCTTGCAGGTGCTGCCAC	0.507000													39	59					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176709278	176709278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:176709278C>T	uc001gkz.2	+	14	5261	c.4097C>T	c.(4096-4098)TCG>TTG	p.S1366L	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1366					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						ATTGGTCTTTCGGCTCCCAGT	0.512000													21	54					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176845761	176845761	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:176845761C>T	uc001glc.2	-	21	3587	c.3375G>A	c.(3373-3375)TGG>TGA	p.W1125*	ASTN1_uc001glb.1_Nonsense_Mutation_p.W1125*|ASTN1_uc001gld.1_Nonsense_Mutation_p.W1125*	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1133	Fibronectin type-III 1.				cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						TGTCCACTCCCCACAGCGTGA	0.602000													20	25					0	0	1	0	0
C1orf125	126859	broad.mit.edu	37	1	179380307	179380307	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:179380307A>C	uc001gmo.2	+	12	1263	c.1136A>C	c.(1135-1137)TAT>TCT	p.Y379S	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmn.1_Missense_Mutation_p.Y167S|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.Y379S	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	379	Potential.										0						CATGACTTATATACATTACAA	0.284000													53	52					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181727965	181727965	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:181727965C>T	uc001gow.2	+	32	4731	c.4566C>T	c.(4564-4566)TCC>TCT	p.S1522S	CACNA1E_uc009wxs.2_Silent_p.S1410S|CACNA1E_uc001gox.1_Silent_p.S748S|CACNA1E_uc009wxt.2_Silent_p.S748S	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1522	Helical; Name=S2 of repeat IV.|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TGGTGTTTTCCCTGGAATGTG	0.478000													40	48					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181765849	181765849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:181765849G>A	uc001gow.2	+	46	6290	c.6125G>A	c.(6124-6126)CGA>CAA	p.R2042Q	CACNA1E_uc009wxs.2_Missense_Mutation_p.R1930Q|CACNA1E_uc009wxt.2_Missense_Mutation_p.R1311Q	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2085	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GAGCGGGGACGATCAAAAGAG	0.557000													30	35					0	0	1	0	0
LAMC1	3915	broad.mit.edu	37	1	183085947	183085947	+	Silent	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:183085947T>C	uc001gpy.3	+	8	1730	c.1473T>C	c.(1471-1473)GGT>GGC	p.G491G		NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor	491	Laminin EGF-like 4.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ATCCTCGGGGTTGCACACCCT	0.373000													55	51					0	0	1	0	0
SMG7	9887	broad.mit.edu	37	1	183498584	183498584	+	Silent	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:183498584T>C	uc001gqg.2	+	8	881	c.759T>C	c.(757-759)TTT>TTC	p.F253F	SMG7_uc010pob.1_Silent_p.F282F|SMG7_uc001gqf.2_Silent_p.F253F|SMG7_uc001gqh.2_Silent_p.F253F|SMG7_uc001gqi.2_Silent_p.F211F|SMG7_uc010poc.1_Silent_p.F211F	NM_173156	NP_775179	Q92540	SMG7_HUMAN	SMG-7 homolog isoform 1	253					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|intermediate filament cytoskeleton|nucleus	protein phosphatase 2A binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TCAAGGCCTTTATTAAATTCC	0.388000													47	19					0	0	1	0	0
IVNS1ABP	10625	broad.mit.edu	37	1	185269669	185269669	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:185269669C>A	uc001grl.2	-	11	1765	c.1142G>T	c.(1141-1143)TGT>TTT	p.C381F	IVNS1ABP_uc001gri.2_Missense_Mutation_p.C41F|IVNS1ABP_uc001grj.2_Missense_Mutation_p.C41F|IVNS1ABP_uc009wyj.2_Missense_Mutation_p.C163F|IVNS1ABP_uc009wyk.2_RNA|IVNS1ABP_uc001grm.2_Missense_Mutation_p.C41F	NM_006469	NP_006460	Q9Y6Y0	NS1BP_HUMAN	influenza virus NS1A binding protein	381	Kelch 1.				interspecies interaction between organisms|response to virus|RNA splicing|transcription from RNA polymerase III promoter	cytoplasm|cytoskeleton|spliceosomal complex|transcription factor complex				ovary(4)|central_nervous_system(1)	5						TGTTCGAAGACATTCCTCTCT	0.388000													27	74					2.75727e-19	2.80304e-19	1	1	0
IVNS1ABP	10625	broad.mit.edu	37	1	185270669	185270669	+	Silent	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:185270669A>G	uc001grl.2	-	9	1415	c.792T>C	c.(790-792)CAT>CAC	p.H264H	IVNS1ABP_uc001gri.2_5'UTR|IVNS1ABP_uc001grj.2_5'UTR|IVNS1ABP_uc009wyj.2_Silent_p.H46H|IVNS1ABP_uc009wyk.2_RNA|IVNS1ABP_uc001grm.2_5'UTR	NM_006469	NP_006460	Q9Y6Y0	NS1BP_HUMAN	influenza virus NS1A binding protein	264	Sufficient for AHR interaction and signaling.				interspecies interaction between organisms|response to virus|RNA splicing|transcription from RNA polymerase III promoter	cytoplasm|cytoskeleton|spliceosomal complex|transcription factor complex				ovary(4)|central_nervous_system(1)	5						TTATCTGCTTATGGCCATTCT	0.423000													17	78					0	0	1	0	0
KCNT2	343450	broad.mit.edu	37	1	196397274	196397274	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:196397274C>T	uc001gtd.1	-	10	1005	c.945G>A	c.(943-945)ATG>ATA	p.M315I	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.M315I|KCNT2_uc001gtf.1_Missense_Mutation_p.M315I|KCNT2_uc001gtg.1_Intron|KCNT2_uc009wyu.2_Missense_Mutation_p.M315I|KCNT2_uc009wyv.1_Missense_Mutation_p.M290I	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	315	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TTAAAAAATCCATAAGTAAAT	0.378000													8	29					0	0	1	0	0
KCNT2	343450	broad.mit.edu	37	1	196461411	196461411	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:196461411G>A	uc001gtd.1	-	2	216	c.156C>T	c.(154-156)TTC>TTT	p.F52F	KCNT2_uc001gte.1_Silent_p.F52F|KCNT2_uc001gtf.1_Silent_p.F52F|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Silent_p.F52F|KCNT2_uc009wyv.1_Silent_p.F52F	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	52	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						GGTTTTTTATGAAAAATAATT	0.264000													7	4					0	0	1	0	0
CFHR5	81494	broad.mit.edu	37	1	196953106	196953106	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:196953106C>T	uc001gts.3	+	3	397	c.269C>T	c.(268-270)CCT>CTT	p.P90L		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	90	Sushi 2.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						TGTTCCTTTCCTTTTGTGAAA	0.308000													15	29					0	0	1	0	0
CFHR5	81494	broad.mit.edu	37	1	196965187	196965187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:196965187G>A	uc001gts.3	+	6	954	c.826G>A	c.(826-828)GAG>AAG	p.E276K		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	276	Sushi 5.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						ACCTGAACTCGAGTACGGTTA	0.348000													48	80					0	0	1	0	0
MIR1231	100302158	broad.mit.edu	37	1	201777790	201777790	+	RNA	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:201777790C>T	hsa-mir-1231|MI0006321	+			c.52C>T			NAV1_uc001gwu.2_Intron|NAV1_uc001gwx.2_Intron																	0						GGCTTGCTGTCTGTCCAGTCT	0.582000													119	120					0	0	1	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204197881	204197881	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:204197881T>C	uc001hau.2	-	20	3177	c.2860A>G	c.(2860-2862)ATC>GTC	p.I954V		NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	954										ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			AGTGTCTTGATCCTCTCCACC	0.547000													36	71					0	0	1	0	0
PPP1R15B	84919	broad.mit.edu	37	1	204379631	204379631	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:204379631G>A	uc001hav.3	-	1	1314	c.909C>T	c.(907-909)TTC>TTT	p.F303F		NM_032833	NP_116222	Q5SWA1	PR15B_HUMAN	protein phosphatase 1, regulatory subunit 15B	303					regulation of translation					ovary(1)|pancreas(1)	2	all_cancers(21;0.0032)|all_neural(3;0.0218)|Glioma(3;0.0382)|Breast(84;0.179)|all_epithelial(62;0.193)|Prostate(682;0.227)		all cancers(3;1.14e-29)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.139)			CCTGTTGAAGGAATTCCAGCC	0.532000													153	150					0	0	1	0	0
TMCC2	9911	broad.mit.edu	37	1	205211090	205211090	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:205211090C>T	uc001hbz.1	+	3	1109	c.665C>T	c.(664-666)TCC>TTC	p.S222F	TMCC2_uc010prf.1_Missense_Mutation_p.S144F	NM_014858	NP_055673	O75069	TMCC2_HUMAN	transmembrane and coiled-coil domain family 2	222						integral to membrane	protein binding			pancreas(1)	1	Breast(84;0.0871)		BRCA - Breast invasive adenocarcinoma(75;0.117)			CGCTCTTCCTCCACCACCGAC	0.687000													29	33					0	0	1	0	0
NUAK2	81788	broad.mit.edu	37	1	205280897	205280897	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:205280897G>A	uc001hce.2	-	2	415	c.288C>T	c.(286-288)CAC>CAT	p.H96H		NM_030952	NP_112214	Q9H093	NUAK2_HUMAN	NUAK family, SNF1-like kinase, 2	96	Protein kinase.				actin cytoskeleton organization|apoptosis|cellular response to glucose starvation|negative regulation of apoptosis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)	5	Breast(84;0.186)		BRCA - Breast invasive adenocarcinoma(75;0.117)			CCCTCCGTATGTGCATCAGAT	0.488000													10	147					0	0	1	0	0
KLHDC8A	55220	broad.mit.edu	37	1	205308423	205308423	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:205308423G>A	uc001hcf.1	-	4	1224	c.656C>T	c.(655-657)ACC>ATC	p.T219I	KLHDC8A_uc010prg.1_Missense_Mutation_p.T106I|KLHDC8A_uc001hcg.1_Missense_Mutation_p.T219I	NM_018203	NP_060673	Q8IYD2	KLD8A_HUMAN	kelch domain containing 8A	219	Kelch 5.									ovary(1)	1	Breast(84;0.23)		BRCA - Breast invasive adenocarcinoma(75;0.117)			GTTGTCCAGGGTCACAAAGCT	0.567000													21	57					0	0	1	0	0
SLC26A9	115019	broad.mit.edu	37	1	205899048	205899048	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:205899048G>C	uc001hdq.2	-	6	803	c.689C>G	c.(688-690)TCC>TGC	p.S230C	SLC26A9_uc001hdo.2_5'Flank|SLC26A9_uc001hdp.2_Missense_Mutation_p.S230C	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	230	Helical; (Potential).					integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			GCCTGTGTAGGAGGGGATGGT	0.567000													47	55					0	0	1	0	0
AVPR1B	553	broad.mit.edu	37	1	206230980	206230981	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:206230980_206230981CC>TT	uc001hds.2	+	2	1271_1272	c.1113_1114CC>TT	c.(1111-1116)AGCCTC>AGTTTC	p.L372F		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	372	Cytoplasmic (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	CCGACGGCAGCCTCTCGAGCCG	0.698000													5	3					0	0	1	0	0
RASSF5	83593	broad.mit.edu	37	1	206681268	206681268	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:206681268G>A	uc001hed.2	+	1	390	c.333G>A	c.(331-333)CAG>CAA	p.Q111Q	RASSF5_uc001hec.1_Silent_p.Q111Q|RASSF5_uc001hee.2_Silent_p.Q111Q	NM_182663	NP_872604	Q8WWW0	RASF5_HUMAN	Ras association (RalGDS/AF-6) domain family 5	111					apoptosis|intracellular signal transduction	cytoplasm|microtubule	metal ion binding|protein binding			ovary(1)	1	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			AGCAGCCGCAGGATCCCAGAG	0.746000													4	5					0	0	1	0	0
LGTN	1939	broad.mit.edu	37	1	206776555	206776555	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:206776555C>T	uc001heh.2	-	6	743	c.534G>A	c.(532-534)CGG>CGA	p.R178R	LGTN_uc009xbw.2_Intron	NM_006893	NP_008824	P41214	EIF2D_HUMAN	ligatin	178					intracellular protein transport	cytoplasm	protein binding|receptor activity|translation initiation factor activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			TGTTTCCAGACCGCCTGGAAA	0.542000													47	48					0	0	1	0	0
DYRK3	8444	broad.mit.edu	37	1	206821040	206821040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:206821040C>T	uc001hej.2	+	3	665	c.497C>T	c.(496-498)CCA>CTA	p.P166L	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Missense_Mutation_p.P146L	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	166					erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			ATTAATTATCCAGAAATTTAC	0.423000													44	79					0	0	1	0	0
CR2	1380	broad.mit.edu	37	1	207644818	207644818	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:207644818G>A	uc001hfw.2	+	9	1638	c.1544G>A	c.(1543-1545)TGG>TAG	p.W515*	CR2_uc001hfv.2_Nonsense_Mutation_p.W515*|CR2_uc009xch.2_Nonsense_Mutation_p.W515*|CR2_uc009xci.1_Intron	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	515	Sushi 8.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						ACAATTCCTTGGTTTATGGAG	0.388000													103	70					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207697024	207697024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:207697024C>T	uc001hfy.2	+	5	696	c.556C>T	c.(556-558)CAC>TAC	p.H186Y	CR1_uc009xcl.1_Missense_Mutation_p.H186Y|CR1_uc001hfx.2_Missense_Mutation_p.H186Y|CR1_uc009xcj.1_Missense_Mutation_p.H186Y|CR1_uc009xck.1_Missense_Mutation_p.H186Y	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	186	Extracellular (Potential).|Sushi 3.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						AGAGAATTTTCACTATGGATC	0.483000													11	30					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207787770	207787770	+	Silent	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:207787770T>C	uc001hfy.2	+	32	5387	c.5247T>C	c.(5245-5247)TCT>TCC	p.S1749S	CR1_uc001hfx.2_Silent_p.S2199S	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1749	Extracellular (Potential).|Sushi 27.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						AAGGCAGGTCTGCTAGTCATT	0.423000													7	87					0	0	1	0	0
KCNK2	3776	broad.mit.edu	37	1	215368394	215368394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:215368394G>A	uc001hkq.2	+	6	1091	c.922G>A	c.(922-924)GGA>AGA	p.G308R	KCNK2_uc001hko.2_Missense_Mutation_p.G304R|KCNK2_uc009xdm.2_RNA|KCNK2_uc001hkp.2_RNA|KCNK2_uc010pua.1_RNA|KCNK2_uc001hkr.3_Missense_Mutation_p.G293R	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	308	Helical; (Potential).						outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	GAGCATGATTGGAGATTGGCT	0.383000													90	153					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215953204	215953204	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:215953204C>T	uc001hku.1	-	55	11307	c.10920G>A	c.(10918-10920)AGG>AGA	p.R3640R		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3640	Extracellular (Potential).|Fibronectin type-III 21.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TATGCTGTCTCCTGTCAGTGG	0.493000										HNSCC(13;0.011)			19	46					0	0	1	0	0
ENAH	55740	broad.mit.edu	37	1	225692710	225692710	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:225692710G>A	uc001hpc.1	-	12	2037	c.1584C>T	c.(1582-1584)TCC>TCT	p.S528S	ENAH_uc001hpd.1_Intron|ENAH_uc001hpb.1_Silent_p.S147S	NM_001008493	NP_001008493	Q8N8S7	ENAH_HUMAN	enabled homolog isoform a	528	EVH2.				axon guidance|intracellular transport|T cell receptor signaling pathway	cytosol|filopodium|focal adhesion|lamellipodium|synapse	actin binding|SH3 domain binding|WW domain binding			ovary(1)|skin(1)	2	Breast(184;0.206)			GBM - Glioblastoma multiforme(131;0.19)		ATGAATCATAGGACCTGTTGT	0.368000													36	37					0	0	1	0	0
EPHX1	2052	broad.mit.edu	37	1	226030159	226030159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:226030159G>A	uc001hpk.2	+	7	1104	c.1024G>A	c.(1024-1026)GAT>AAT	p.D342N	EPHX1_uc001hpl.2_Missense_Mutation_p.D342N	NM_001136018	NP_001129490	P07099	HYEP_HUMAN	epoxide hydrolase 1	342					aromatic compound catabolic process|response to toxin	endoplasmic reticulum membrane|integral to membrane|microsome	cis-stilbene-oxide hydrolase activity|epoxide hydrolase activity			ovary(3)|lung(1)	4	Breast(184;0.197)					ATACCTGGAGGATGGAGGCCT	0.572000													36	93					0	0	1	0	0
SNAP47	116841	broad.mit.edu	37	1	227947039	227947039	+	Missense_Mutation	SNP	C	T	T	rs143073539		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:227947039C>T	uc001hrf.2	+	3	1390	c.976C>T	c.(976-978)CGT>TGT	p.R326C	SNAP47_uc001hqz.2_Missense_Mutation_p.R281C|SNAP47_uc001hra.2_Missense_Mutation_p.R84C|SNAP47_uc001hrd.2_Missense_Mutation_p.R326C|SNAP47_uc001hre.2_Missense_Mutation_p.R84C|SNAP47_uc001hrg.1_Missense_Mutation_p.R281C	NM_053052	NP_444280	Q5SQN1	SNP47_HUMAN	synaptosomal-associated protein, 47kDa	326						endomembrane system|membrane|perinuclear region of cytoplasm				ovary(1)	1						CATGGCCTATCGTTTGATATC	0.478000													49	101					0	0	1	0	0
COG2	22796	broad.mit.edu	37	1	230807279	230807279	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:230807279T>A	uc001htw.2	+	8	943	c.792T>A	c.(790-792)TTT>TTA	p.F264L	COG2_uc001htx.2_Missense_Mutation_p.F264L|COG2_uc010pwc.1_Missense_Mutation_p.F137L	NM_007357	NP_031383	Q14746	COG2_HUMAN	component of oligomeric golgi complex 2 isoform	264					Golgi organization|intra-Golgi vesicle-mediated transport|intracellular protein transport|oligosaccharide biosynthetic process|protein glycosylation	Golgi membrane|Golgi stack|Golgi transport complex	protein binding|protein transporter activity				0	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.178)				TAGAGCAGTTTGTTGAATCTC	0.358000													21	36					0	0	1	0	0
TRIM67	440730	broad.mit.edu	37	1	231339757	231339757	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:231339757G>T	uc009xfn.1	+	6	1721	c.1679G>T	c.(1678-1680)CGG>CTG	p.R560L		NM_001004342	NP_001004342	Q6ZTA4	TRI67_HUMAN	tripartite motif-containing 67	560	Fibronectin type-III.					cytoplasm|cytoskeleton	zinc ion binding			ovary(2)|breast(1)|kidney(1)	4	Breast(184;0.0871)	all_cancers(173;0.189)|Prostate(94;0.167)				GGACAGTTCCGGGTGAGGCCT	0.632000													54	38					1.931e-44	1.9868e-44	1	1	0
PCNXL2	80003	broad.mit.edu	37	1	233394591	233394591	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:233394591C>T	uc001hvl.2	-	5	1252	c.1017G>A	c.(1015-1017)GGG>GGA	p.G339G	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	339						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				AGGGCAGGTCCCCCTGGCAGG	0.567000													51	79					0	0	1	0	0
ARID4B	51742	broad.mit.edu	37	1	235335940	235335940	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:235335940C>T	uc001hwq.2	-	23	4302	c.3804G>A	c.(3802-3804)GAG>GAA	p.E1268E	ARID4B_uc001hwr.2_Silent_p.E1182E|ARID4B_uc001hwp.2_RNA	NM_016374	NP_057458	Q4LE39	ARI4B_HUMAN	AT rich interactive domain 4B isoform 1	1268	Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding			ovary(2)|lung(1)	3	Ovarian(103;0.0473)|Breast(184;0.23)	all_cancers(173;0.000782)|Prostate(94;0.0132)|all_epithelial(177;0.0808)|Lung SC(1967;0.24)	OV - Ovarian serous cystadenocarcinoma(106;2.86e-05)			TACTTTCTCTCTCTTTCTTCT	0.189000													10	5					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237580362	237580362	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:237580362G>A	uc001hyl.1	+	11	907	c.787G>A	c.(787-789)GAA>AAA	p.E263K		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	263	Cytoplasmic (By similarity).|MIR 3.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TGTTCATTATGAAGGTGGCGC	0.398000													12	33					0	0	1	0	0
LOC100130331	100130331	broad.mit.edu	37	1	238090459	238090459	+	RNA	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:238090459G>A	uc010pyc.1	+	12		c.1965G>A				NR_027247				Homo sapiens mRNA; cDNA DKFZp434B2115 (from clone DKFZp434B2115).												0						AGGCCTGCCCGAACCCCAAGG	0.577000													29	27					0	0	1	0	0
KIF26B	55083	broad.mit.edu	37	1	245848919	245848919	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:245848919G>A	uc001ibf.1	+	12	3074	c.2634G>A	c.(2632-2634)AAG>AAA	p.K878K	KIF26B_uc001ibg.1_Silent_p.K496K|KIF26B_uc001ibh.1_Silent_p.K120K	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	878					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			TCTCTGACAAGGAGCTCACCG	0.667000													25	26					0	0	1	0	0
OR2B11	127623	broad.mit.edu	37	1	247614683	247614683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:247614683G>A	uc010pyx.1	-	1	602	c.602C>T	c.(601-603)ACC>ATC	p.T201I		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			AGCCAGTATGGTGTCATTCAC	0.572000													26	43					0	0	1	0	0
OR2C3	81472	broad.mit.edu	37	1	247694932	247694932	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:247694932C>T	uc009xgy.2	-	2	1244	c.882G>A	c.(880-882)AGG>AGA	p.R294R	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	294	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			CCTCCGTGTTCCTCAGGGTGT	0.547000													35	55					0	0	1	0	0
OR2G3	81469	broad.mit.edu	37	1	247769025	247769025	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:247769025C>T	uc010pyz.1	+	1	138	c.138C>T	c.(136-138)ATC>ATT	p.I46I		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	46	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TCACCATAATCATCATCTCAT	0.463000													82	156					0	0	1	0	0
OR13G1	441933	broad.mit.edu	37	1	247835468	247835468	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:247835468C>T	uc001idi.1	-	1	876	c.876G>A	c.(874-876)AGG>AGA	p.R292R		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	292	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			CCTGCATCTCCCTATTCTGGA	0.438000													30	70					0	0	1	0	0
OR13G1	441933	broad.mit.edu	37	1	247836116	247836116	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:247836116C>T	uc001idi.1	-	1	228	c.228G>A	c.(226-228)CCG>CCA	p.P76P		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	76	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			CCAGCATCTTCGGTATGATGC	0.458000													14	24					0	0	1	0	0
OR14A16	284532	broad.mit.edu	37	1	247978181	247978181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:247978181G>A	uc001idm.1	-	1	851	c.851C>T	c.(850-852)CCC>CTC	p.P284L		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTATATAATGGGATTAAAGGT	0.403000													20	24					0	0	1	0	0
OR2M4	26245	broad.mit.edu	37	1	248402931	248402931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:248402931G>A	uc010pzh.1	+	1	701	c.701G>A	c.(700-702)CGT>CAT	p.R234H		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GGGGAAAGTCGTCGCAAGGCC	0.483000													22	27					0	0	1	0	0
OR2T6	254879	broad.mit.edu	37	1	248551095	248551095	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:248551095C>T	uc001iei.1	+	1	186	c.186C>T	c.(184-186)CTC>CTT	p.L62L		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGTACTTCCTCCTCAGCCACC	0.488000													16	36					0	0	1	0	0
OR2T1	26696	broad.mit.edu	37	1	248570315	248570315	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:248570315C>T	uc010pzm.1	+	1	1020	c.1020C>T	c.(1018-1020)TAC>TAT	p.Y340Y		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	340	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CCCTCATCTACAGCCTTAGAA	0.517000													99	82					0	0	1	0	0
OR2T2	401992	broad.mit.edu	37	1	248616437	248616437	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:248616437C>T	uc001iek.1	+	1	339	c.339C>T	c.(337-339)TTC>TTT	p.F113F		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GAGGGGAATTCTTCCTGCTGG	0.542000													32	142					0	0	1	0	0
OR2T2	401992	broad.mit.edu	37	1	248616440	248616440	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:248616440C>T	uc001iek.1	+	1	342	c.342C>T	c.(340-342)TTC>TTT	p.F114F		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGGAATTCTTCCTGCTGGGTC	0.542000													33	134					0	0	1	0	0
TUBB8	347688	broad.mit.edu	37	10	94612	94612	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:94612C>T	uc001ifi.2	-	3	220	c.220G>A	c.(220-222)GAC>AAC	p.D74N	TUBB8_uc009xhe.2_Intron|TUBB8_uc010pzs.1_Missense_Mutation_p.D2N	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	74					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		CGCACAGAGTCCATGGTGCCC	0.697000													42	26					0	0	1	0	0
DIP2C	22982	broad.mit.edu	37	10	436266	436266	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:436266T>C	uc001ifp.2	-	12	1522	c.1432A>G	c.(1432-1434)AAA>GAA	p.K478E	DIP2C_uc009xhj.1_Missense_Mutation_p.K174E	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	478						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		CGGGGCGGTTTGGAGAGATGT	0.473000													59	35					0	0	1	0	0
LARP4B	23185	broad.mit.edu	37	10	871159	871159	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:871159G>A	uc001ifs.1	-	12	1371	c.1330C>T	c.(1330-1332)CGA>TGA	p.R444*		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	444							nucleotide binding|RNA binding	p.R444Q(1)		ovary(2)|central_nervous_system(1)	3						TTAATTAATCGATCTGCAGTG	0.463000													74	21					0	0	1	0	0
VIM	7431	broad.mit.edu	37	10	17271591	17271591	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:17271591C>G	uc001iou.2	+	2	583	c.170C>G	c.(169-171)CCG>CGG	p.P57R	uc001iot.1_RNA|VIM_uc001iov.1_Missense_Mutation_p.P57R|VIM_uc001iow.1_RNA|VIM_uc001iox.1_Missense_Mutation_p.P57R|VIM_uc001ioy.1_Missense_Mutation_p.P57R|VIM_uc001ioz.1_RNA|VIM_uc001ipb.1_RNA|VIM_uc009xjv.1_Missense_Mutation_p.P57R|VIM_uc001ipc.1_Missense_Mutation_p.P57R	NM_003380	NP_003371	P08670	VIME_HUMAN	vimentin	57	Head.				cellular component disassembly involved in apoptosis|cellular component movement|interspecies interaction between organisms|muscle filament sliding	cytosol|intermediate filament	protein C-terminus binding|structural constituent of cytoskeleton			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4						GCCTCGTCCCCGGGCGGCGTG	0.731000													2	10					0	0	1	0	0
PLXDC2	84898	broad.mit.edu	37	10	20568666	20568666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:20568666G>A	uc001iqg.1	+	14	2145	c.1508G>A	c.(1507-1509)AGA>AAA	p.R503K	PLXDC2_uc001iqh.1_Missense_Mutation_p.R454K|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	503	Cytoplasmic (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						ATGAAGTTTAGAAGAGGCTCT	0.418000													23	21					0	0	1	0	0
ARMC3	219681	broad.mit.edu	37	10	23270363	23270363	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:23270363C>T	uc001irm.3	+	9	1094	c.1011C>T	c.(1009-1011)TCC>TCT	p.S337S	ARMC3_uc010qcv.1_Silent_p.S337S|ARMC3_uc010qcw.1_Silent_p.S74S	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	337	ARM 8.						binding				0						TTGCTGCTTCCCAAGCTATTT	0.353000													24	12					0	0	1	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24874293	24874293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:24874293G>A	uc001isb.2	-	26	5412	c.4925C>T	c.(4924-4926)CCC>CTC	p.P1642L	ARHGAP21_uc010qdb.1_RNA	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	1641	Interaction with CTNNA1.				signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						GGGGAACACGGGAAACTCGCT	0.532000													37	43					0	0	1	0	0
GPR158	57512	broad.mit.edu	37	10	25887166	25887166	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:25887166G>A	uc001isj.2	+	11	2671	c.2611G>A	c.(2611-2613)GAG>AAG	p.E871K	GPR158_uc001isk.2_Missense_Mutation_p.E246K	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	871	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						TGAGTCCACGGAGTCGGTGCC	0.493000													33	28					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28272830	28272830	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:28272830G>A	uc009xky.2	-	6	859	c.761C>T	c.(760-762)CCT>CTT	p.P254L	ARMC4_uc010qds.1_5'Flank|ARMC4_uc010qdt.1_5'Flank|ARMC4_uc001itz.2_Missense_Mutation_p.P254L|ARMC4_uc010qdu.1_5'Flank	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	254							binding			ovary(4)|skin(2)	6						ACCATCGTGAGGTTTCACCAG	0.393000													23	22					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28274109	28274109	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:28274109G>A	uc009xky.2	-	4	512	c.414C>T	c.(412-414)GGC>GGT	p.G138G	ARMC4_uc010qdt.1_5'Flank|ARMC4_uc001itz.2_Silent_p.G138G	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	138							binding			ovary(4)|skin(2)	6						TATAATCAGAGCCCAGGATTT	0.308000													6	4					0	0	1	0	0
ALOX5	240	broad.mit.edu	37	10	45935913	45935913	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:45935913C>T	uc001jce.2	+	8	1116	c.1017C>T	c.(1015-1017)TTC>TTT	p.F339F	ALOX5_uc009xmt.2_Silent_p.F339F|ALOX5_uc010qfg.1_Silent_p.F339F	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	339	Lipoxygenase.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	ACCCTATTTTCCTCCCTTCGG	0.483000													50	51					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48389691	48389691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:48389691G>A	uc001jez.2	-	1	1301	c.1187C>T	c.(1186-1188)CCT>CTT	p.P396L		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	396	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GGGCCAAGAAGGAGTTTCTGT	0.647000													16	51					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49430446	49430446	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:49430446G>A	uc001jgi.2	-	12	1472	c.1365C>T	c.(1363-1365)ATC>ATT	p.I455I	FRMPD2_uc001jgh.2_Silent_p.I424I|FRMPD2_uc001jgj.2_Silent_p.I433I	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	455	FERM.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		TCTCCTCCAGGATATCTTTCC	0.512000													58	48					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50950946	50950946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:50950946G>A	uc001jie.2	-	15	2082	c.1940C>T	c.(1939-1941)GCC>GTC	p.A647V	OGDHL_uc009xog.2_Missense_Mutation_p.A674V|OGDHL_uc010qgt.1_Missense_Mutation_p.A590V|OGDHL_uc010qgu.1_Missense_Mutation_p.A438V|OGDHL_uc009xoh.2_Missense_Mutation_p.A438V	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	647					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						GGAGCCAAAGGCCATGTACTC	0.642000													35	31					0	0	1	0	0
NCOA4	8031	broad.mit.edu	37	10	51581361	51581361	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:51581361G>C	uc001jis.3	+	5	666	c.463G>C	c.(463-465)GGG>CGG	p.G155R	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron|NCOA4_uc009xon.2_Missense_Mutation_p.G171R|NCOA4_uc010qhd.1_Missense_Mutation_p.G171R|NCOA4_uc010qhe.1_Missense_Mutation_p.G55R|NCOA4_uc010qhf.1_5'UTR|NCOA4_uc001jit.2_Missense_Mutation_p.G155R|NCOA4_uc009xoo.2_Missense_Mutation_p.G155R	NM_001145263	NP_001138735	Q13772	NCOA4_HUMAN	nuclear receptor coactivator 4 isoform 3	155					androgen receptor signaling pathway|male gonad development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	androgen receptor binding|transcription coactivator activity			central_nervous_system(1)|kidney(1)	2						CACCACATTTGGGTCTCTCAA	0.443000			T	RET	papillary thyroid 								34	91					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55780074	55780074	+	Silent	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:55780074A>G	uc001jju.1	-	20	3024	c.2629T>C	c.(2629-2631)TTA>CTA	p.L877L	PCDH15_uc010qhq.1_Silent_p.L882L|PCDH15_uc010qhr.1_Silent_p.L877L|PCDH15_uc010qhs.1_Silent_p.L889L|PCDH15_uc010qht.1_Silent_p.L884L|PCDH15_uc010qhu.1_Silent_p.L877L|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.L877L|PCDH15_uc010qhw.1_Silent_p.L840L|PCDH15_uc010qhx.1_Silent_p.L806L|PCDH15_uc010qhy.1_Silent_p.L882L|PCDH15_uc010qhz.1_Silent_p.L877L|PCDH15_uc010qia.1_Silent_p.L855L|PCDH15_uc010qib.1_Silent_p.L855L|PCDH15_uc001jjw.2_Silent_p.L877L	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	877	Extracellular (Potential).|Cadherin 8.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				AAACTCCTTAAAAGCGATAGT	0.413000										HNSCC(58;0.16)			29	67					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61865687	61865687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:61865687C>T	uc001jky.2	-	28	3496	c.3304G>A	c.(3304-3306)GAG>AAG	p.E1102K	ANK3_uc001jkw.2_Missense_Mutation_p.E236K|ANK3_uc009xpa.2_Missense_Mutation_p.E236K|ANK3_uc001jkx.2_Missense_Mutation_p.E280K|ANK3_uc010qih.1_Missense_Mutation_p.E1103K|ANK3_uc001jkz.3_Missense_Mutation_p.E1096K|ANK3_uc001jla.1_Missense_Mutation_p.E168K|ANK3_uc001jlb.1_Missense_Mutation_p.E620K	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1102					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTAAGTAACTCGGTTAAATCT	0.383000													32	24					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61932690	61932690	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:61932690G>A	uc001jky.2	-	20	2542	c.2350C>T	c.(2350-2352)CAG>TAG	p.Q784*	ANK3_uc001jkx.2_5'Flank|ANK3_uc010qih.1_Nonsense_Mutation_p.Q767*|ANK3_uc001jkz.3_Nonsense_Mutation_p.Q778*|ANK3_uc001jlb.1_Nonsense_Mutation_p.Q313*|ANK3_uc001jlc.1_Nonsense_Mutation_p.Q445*	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	784	ANK 22.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GCGTTGTTCTGAAGTAAGACA	0.478000													31	25					0	0	1	0	0
TMEM26	219623	broad.mit.edu	37	10	63188832	63188832	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:63188832G>A	uc001jlo.2	-	4	826	c.457C>T	c.(457-459)CTG>TTG	p.L153L	TMEM26_uc010qij.1_RNA|TMEM26_uc001jlq.2_RNA	NM_178505	NP_848600	Q6ZUK4	TMM26_HUMAN	transmembrane protein 26	153	Helical; (Potential).					integral to membrane					0	Prostate(12;0.0112)					AGCATTAACAGGAATGTCTGA	0.418000													15	44					0	0	1	0	0
HK1	3098	broad.mit.edu	37	10	71158464	71158464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:71158464C>T	uc001jpl.3	+	17	2590	c.2489C>T	c.(2488-2490)GCC>GTC	p.A830V	HK1_uc001jpg.3_Missense_Mutation_p.A818V|HK1_uc001jph.3_Missense_Mutation_p.A834V|HK1_uc001jpi.3_Missense_Mutation_p.A834V|HK1_uc001jpj.3_Missense_Mutation_p.A865V|HK1_uc001jpk.3_Missense_Mutation_p.A829V	NM_000188	NP_000179	P19367	HXK1_HUMAN	hexokinase 1 isoform HKI	830	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane|nucleus	ATP binding|glucokinase activity			ovary(1)	1						TCCAGGAGGGCCGCACAGCTG	0.602000													31	60					0	0	1	0	0
LRRC20	55222	broad.mit.edu	37	10	72083724	72083724	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:72083724G>C	uc001jqx.1	-	4	517	c.295C>G	c.(295-297)CTC>GTC	p.L99V	LRRC20_uc001jqy.1_Intron|LRRC20_uc001jqz.1_Missense_Mutation_p.L49V	NM_207119	NP_997002	Q8TCA0	LRC20_HUMAN	leucine rich repeat containing 20 isoform 1	99	LRR 3.										0						ATGGCCTTGAGGTGCTGCAGG	0.617000													35	76					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73377129	73377129	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:73377129C>T	uc001jrx.3	+	11	1490	c.1113C>T	c.(1111-1113)ATC>ATT	p.I371I	CDH23_uc001jrw.3_Silent_p.I371I|CDH23_uc009xql.2_Silent_p.I416I	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	371	Cadherin 4.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CACTCTTCATCCAGGTGGTGG	0.582000													24	56					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73567295	73567295	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:73567295C>T	uc001jrx.3	+	57	8708	c.8331C>T	c.(8329-8331)TTC>TTT	p.F2777F	CDH23_uc001jsg.3_Silent_p.F537F|CDH23_uc001jsh.3_Silent_p.F537F|CDH23_uc001jsi.3_Silent_p.F537F	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2777	Cadherin 26.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						AGAAGAACTTCCATCTGCAGC	0.622000													44	30					0	0	1	0	0
CHST3	9469	broad.mit.edu	37	10	73765672	73765672	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:73765672C>A	uc001jsn.2	+	2	512	c.72C>A	c.(70-72)TAC>TAA	p.Y24*		NM_004273	NP_004264	Q7LGC8	CHST3_HUMAN	chondroitin 6-sulfotransferase 3	24	Helical; Signal-anchor for type II membrane protein; (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 6-sulfotransferase activity				0						GAAGCAAATACGCCCTTTTCT	0.488000													38	85					4.64027e-19	4.71416e-19	1	1	0
OIT3	170392	broad.mit.edu	37	10	74684209	74684209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:74684209G>A	uc001jte.1	+	7	1392	c.1174G>A	c.(1174-1176)GAG>AAG	p.E392K	OIT3_uc009xqs.1_Intron	NM_152635	NP_689848	Q8WWZ8	OIT3_HUMAN	oncoprotein-induced transcript 3 precursor	392	ZP.					nuclear envelope	calcium ion binding			ovary(2)	2	Prostate(51;0.0198)					ATTCACTCTGGAGATCTTCAA	0.512000													29	79					0	0	1	0	0
ECD	11319	broad.mit.edu	37	10	74914157	74914157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:74914157G>A	uc001jtn.2	-	6	883	c.640C>T	c.(640-642)CCA>TCA	p.P214S	ECD_uc009xqx.2_Missense_Mutation_p.P214S|ECD_uc009xqy.2_Missense_Mutation_p.P214S|ECD_uc001jto.2_Intron	NM_007265	NP_009196	O95905	SGT1_HUMAN	suppressor of S. cerevisiae gcr2 isoform 1	214					regulation of glycolysis|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	transcription coactivator activity			pancreas(1)	1	Prostate(51;0.0119)					ATGCCAGCTGGAAGGAAGCAG	0.473000													15	25					0	0	1	0	0
KIAA0913	23053	broad.mit.edu	37	10	75548578	75548578	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:75548578T>C	uc009xrl.2	+	2	391	c.359T>C	c.(358-360)ATT>ACT	p.I120T	KIAA0913_uc001jve.2_Missense_Mutation_p.I120T|KIAA0913_uc001jvf.2_Missense_Mutation_p.I120T|KIAA0913_uc001jvh.2_5'Flank	NM_015037	NP_055852	A7E2V4	K0913_HUMAN	hypothetical protein LOC23053	120							zinc ion binding			breast(1)	1	Prostate(51;0.0112)					GAAGAGGACATTCGGTGAGGC	0.507000													12	31					0	0	1	0	0
VCL	7414	broad.mit.edu	37	10	75830736	75830736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:75830736C>T	uc001jwd.2	+	4	488	c.394C>T	c.(394-396)CGT>TGT	p.R132C	VCL_uc009xrr.2_5'UTR|VCL_uc010qky.1_Missense_Mutation_p.R39C|VCL_uc001jwe.2_Missense_Mutation_p.R132C|VCL_uc010qkz.1_Intron	NM_014000	NP_054706	P18206	VINC_HUMAN	vinculin isoform meta-VCL	132	N-terminal globular head.				adherens junction assembly|apical junction assembly|cell-matrix adhesion|cellular component movement|epithelial cell-cell adhesion|lamellipodium assembly|morphogenesis of an epithelium|muscle contraction|negative regulation of cell migration|platelet activation|platelet degranulation|protein localization at cell surface	costamere|cytosol|extracellular region|focal adhesion	actin binding|alpha-catenin binding|beta-catenin binding|beta-dystroglycan binding|cadherin binding|structural molecule activity		VCL/ALK(4)	kidney(4)|ovary(1)|central_nervous_system(1)	6	Prostate(51;0.0112)					TTTTCAGGTCCGTAAAATTAT	0.368000													14	23					0	0	1	0	0
CDHR1	92211	broad.mit.edu	37	10	85971952	85971952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:85971952C>T	uc001kcv.2	+	15	1571	c.1571C>T	c.(1570-1572)TCC>TTC	p.S524F	CDHR1_uc001kcw.2_Missense_Mutation_p.S524F|CDHR1_uc009xst.2_Missense_Mutation_p.S228F|CDHR1_uc001kcx.2_5'Flank	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	524	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						ATCCACCCATCCACTGGGCTT	0.537000													34	111					0	0	1	0	0
MMRN2	79812	broad.mit.edu	37	10	88705380	88705380	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:88705380G>A	uc001kea.2	-	2	358	c.231C>T	c.(229-231)TTC>TTT	p.F77F	MMRN2_uc010qmn.1_5'UTR|MMRN2_uc009xtb.2_Intron	NM_024756	NP_079032	Q9H8L6	MMRN2_HUMAN	multimerin 2 precursor	77	EMI.					extracellular space				large_intestine(1)	1						AGTGGATGAGGAATTTCTCTG	0.552000													16	30					0	0	1	0	0
ANKRD22	118932	broad.mit.edu	37	10	90582746	90582746	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:90582746C>T	uc001kfj.3	-	6	896	c.528G>A	c.(526-528)CGG>CGA	p.R176R		NM_144590	NP_653191	Q5VYY1	ANR22_HUMAN	ankyrin repeat domain 22	176											0		Colorectal(252;0.0163)		Colorectal(12;6.29e-05)|COAD - Colon adenocarcinoma(12;7.69e-05)		ATTTTAATCTCCGTGCAATAT	0.403000													76	80					0	0	1	0	0
BTAF1	9044	broad.mit.edu	37	10	93773739	93773740	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:93773739_93773740CC>TT	uc001khr.2	+	32	4635_4636	c.4537_4538CC>TT	c.(4537-4539)CCA>TTA	p.P1513L		NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	1513					negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				GCAGGATCTTCCACCTAAAATT	0.366000													30	106					0	0	1	0	0
NOC3L	64318	broad.mit.edu	37	10	96101487	96101487	+	Silent	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:96101487T>A	uc001kjq.1	-	14	1675	c.1587A>T	c.(1585-1587)ATA>ATT	p.I529I		NM_022451	NP_071896	Q8WTT2	NOC3L_HUMAN	nucleolar complex associated 3 homolog	529						nuclear speck|nucleolus	binding			ovary(1)	1		Colorectal(252;0.0897)				ATTCCACATTTATAAGGTGAG	0.269000													16	38					0	0	1	0	0
CYP2C18	1562	broad.mit.edu	37	10	96495102	96495102	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:96495102G>A	uc001kjv.3	+	9	1700	c.1374G>A	c.(1372-1374)CTG>CTA	p.L458L	CYP2C18_uc001kjw.3_Silent_p.L399L|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Intron	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	458					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		ACTTTAACCTGAAATCTCAGG	0.468000													63	66					0	0	1	0	0
CYP2C8	1558	broad.mit.edu	37	10	96826965	96826965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:96826965C>T	uc001kkb.2	-	3	576	c.481G>A	c.(481-483)GCT>ACT	p.A161T	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.A91T|CYP2C8_uc010qob.1_Missense_Mutation_p.A75T|CYP2C8_uc010qoc.1_Missense_Mutation_p.A59T|CYP2C8_uc010qod.1_Missense_Mutation_p.A75T	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	161					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	AGTCACCCACCCTTGGTTTTT	0.507000													62	65					0	0	1	0	0
DHDPSL	112817	broad.mit.edu	37	10	99358907	99358907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:99358907G>A	uc001kny.2	+	3	761	c.402G>A	c.(400-402)ATG>ATA	p.M134I	DHDPSL_uc001knx.2_Missense_Mutation_p.M134I|DHDPSL_uc001knz.2_Intron|PI4K2A_uc010qoy.1_Intron	NM_138413	NP_612422	Q86XE5	HOGA1_HUMAN	DHDPS-like protein isoform 1	134					glyoxylate catabolic process	mitochondrion	4-hydroxy-2-oxoglutarate aldolase activity				0						ACGCGGCCATGGTGGTGACCC	0.612000													45	121					0	0	1	0	0
NFKB2	4791	broad.mit.edu	37	10	104157369	104157369	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:104157369C>T	uc001kvb.2	+	8	853	c.588C>T	c.(586-588)GCC>GCT	p.A196A	NFKB2_uc001kva.2_Silent_p.A196A|NFKB2_uc010qqk.1_Silent_p.A196A|NFKB2_uc001kvd.2_Silent_p.A196A|NFKB2_uc009xxc.2_Silent_p.A196A	NM_001077494	NP_001070962	Q00653	NFKB2_HUMAN	nuclear factor of kappa light polypeptide gene	196	RHD.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	Bcl3/NF-kappaB2 complex|cytosol|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			lung(3)	3		Colorectal(252;0.00957)		Epithelial(162;3.4e-08)|all cancers(201;6.41e-07)		GCTTCTCTGCCTTCCTTAGAG	0.582000			T	IGH@	B-NHL								128	248					0	0	1	0	0
NFKB2	4791	broad.mit.edu	37	10	104160128	104160129	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:104160128_104160129GG>AA	uc001kvb.2	+	16	1943_1944	c.1678_1679GG>AA	c.(1678-1680)GGA>AAA	p.G560K	NFKB2_uc001kva.2_Missense_Mutation_p.G560K|NFKB2_uc001kvd.2_Missense_Mutation_p.G560K|NFKB2_uc009xxc.2_Missense_Mutation_p.G560K	NM_001077494	NP_001070962	Q00653	NFKB2_HUMAN	nuclear factor of kappa light polypeptide gene	560	ANK 3.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	Bcl3/NF-kappaB2 complex|cytosol|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			lung(3)	3		Colorectal(252;0.00957)		Epithelial(162;3.4e-08)|all cancers(201;6.41e-07)		GGATCGGCATGGAGACTCAGCC	0.653000			T	IGH@	B-NHL								36	79					0	0	1	0	0
TRIM8	81603	broad.mit.edu	37	10	104414852	104414852	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:104414852C>T	uc001kvz.2	+	3	805	c.682C>T	c.(682-684)CTG>TTG	p.L228L		NM_030912	NP_112174	Q9BZR9	TRIM8_HUMAN	tripartite motif-containing 8	228	Potential.					cytoplasm|PML body	ligase activity|protein homodimerization activity|zinc ion binding			ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		AGTGAACCAACTGAAGGAGGA	0.572000													28	39					0	0	1	0	0
COL17A1	1308	broad.mit.edu	37	10	105815148	105815148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:105815148C>T	uc001kxr.2	-	19	1868	c.1699G>A	c.(1699-1701)GGA>AGA	p.G567R	COL17A1_uc010qqv.1_Missense_Mutation_p.G551R	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	567	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		CCAGGGCTTCCTCGGAGATTT	0.363000													36	75					0	0	1	0	0
RPL13AP6	644511	broad.mit.edu	37	10	112696573	112696573	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:112696573T>C	uc010qrh.1	-	1	441	c.419A>G	c.(418-420)CAC>CGC	p.H140R	SHOC2_uc001kzl.3_Intron|SHOC2_uc009xxx.2_Intron|SHOC2_uc010qrg.1_Intron	NR_026715				SubName: Full=cDNA FLJ51256, highly similar to 60S ribosomal protein L13a;												0						GTGAGCCAGGTGCCCCAGATA	0.537000													6	11					0	0	1	0	0
C10orf81	79949	broad.mit.edu	37	10	115536999	115536999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:115536999C>T	uc001lat.1	+	11	1710	c.1148C>T	c.(1147-1149)ACC>ATC	p.T383I	C10orf81_uc001lar.1_Intron|C10orf81_uc009xyc.1_Missense_Mutation_p.T301I|C10orf81_uc001las.1_Missense_Mutation_p.T301I|C10orf81_uc001lau.1_Missense_Mutation_p.T217I	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	397										central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		CTGTTTCTTACCCGGTCCATC	0.527000													20	21					0	0	1	0	0
TDRD1	56165	broad.mit.edu	37	10	115964519	115964519	+	Silent	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:115964519A>G	uc001lbg.1	+	10	1317	c.1164A>G	c.(1162-1164)GAA>GAG	p.E388E	TDRD1_uc001lbf.2_Silent_p.E379E|TDRD1_uc001lbh.1_Silent_p.E379E|TDRD1_uc001lbi.1_Silent_p.E379E|TDRD1_uc010qsc.1_Silent_p.E49E|TDRD1_uc001lbj.2_Silent_p.E97E	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	388					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		TCCCAGCAGAAGGGAATTGGA	0.358000													33	18					0	0	1	0	0
ATRNL1	26033	broad.mit.edu	37	10	117027810	117027810	+	Silent	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:117027810T>C	uc001lcg.2	+	13	2375	c.1989T>C	c.(1987-1989)TCT>TCC	p.S663S		NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	663	Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		TAGCTGCTTCTGATGACAGAT	0.358000													20	70					0	0	1	0	0
PPAPDC1A	196051	broad.mit.edu	37	10	122273434	122273434	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:122273434C>T	uc001lev.1	+	3	529	c.177C>T	c.(175-177)TTC>TTT	p.F59F	PPAPDC1A_uc010qtd.1_Silent_p.F59F|PPAPDC1A_uc009xzl.1_Silent_p.F59F|PPAPDC1A_uc001lew.1_Intron|PPAPDC1A_uc001lex.1_Intron|PPAPDC1A_uc001ley.1_5'UTR	NM_001030059	NP_001025230	Q5VZY2	PPC1A_HUMAN	phosphatidic acid phosphatase type 2 domain	59	Helical; (Potential).				phospholipid dephosphorylation	integral to membrane	phosphatidate phosphatase activity			breast(1)	1		Lung NSC(174;0.1)|all_lung(145;0.132)		all cancers(201;0.0117)		CAATTTCTTTCCTCACACCCC	0.398000													58	63					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123846798	123846798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:123846798C>T	uc001lfv.2	+	4	5143	c.4783C>T	c.(4783-4785)CCT>TCT	p.P1595S	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.P1595S|TACC2_uc010qtv.1_Missense_Mutation_p.P1595S	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1595						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				AGACAGAATTCCTTCTGGAAA	0.582000													39	27					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123970388	123970388	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:123970388G>A	uc001lfv.2	+	9	6808	c.6448G>A	c.(6448-6450)GTG>ATG	p.V2150M	TACC2_uc001lfw.2_Missense_Mutation_p.V296M|TACC2_uc009xzx.2_Missense_Mutation_p.V2105M|TACC2_uc010qtv.1_Missense_Mutation_p.V2154M|TACC2_uc001lfx.2_Translation_Start_Site|TACC2_uc001lfy.2_Translation_Start_Site|TACC2_uc001lfz.2_Missense_Mutation_p.V228M|TACC2_uc001lga.2_Missense_Mutation_p.V228M|TACC2_uc009xzy.2_Missense_Mutation_p.V228M|TACC2_uc001lgb.2_Missense_Mutation_p.V185M|TACC2_uc010qtw.1_Missense_Mutation_p.V245M	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2150						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GACCCCCCCAGTGAAGGAGAC	0.517000													82	99					0	0	1	0	0
ARMS2	387715	broad.mit.edu	37	10	124214457	124214457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:124214457C>T	uc001lgi.2	+	1	279	c.214C>T	c.(214-216)CAC>TAC	p.H72Y		NM_001099667	NP_001093137	P0C7Q2	ARMS2_HUMAN	age-related maculopathy susceptibility 2	72					retina homeostasis	mitochondrion|photoreceptor inner segment				ovary(1)	1		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGCTAAAATCCACACTGAGCT	0.408000													12	29					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124392772	124392772	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:124392772G>A	uc001lgk.1	+	49	6182	c.6076G>A	c.(6076-6078)GGG>AGG	p.G2026R	DMBT1_uc001lgl.1_Missense_Mutation_p.G2016R|DMBT1_uc001lgm.1_Missense_Mutation_p.G1398R|DMBT1_uc009xzz.1_Missense_Mutation_p.G2025R|DMBT1_uc010qtx.1_Missense_Mutation_p.G746R|DMBT1_uc009yab.1_Missense_Mutation_p.G729R|DMBT1_uc009yac.1_Missense_Mutation_p.G320R	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2026	CUB 2.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				ATTCTATCCCGGGAACTATCC	0.507000													33	101					0	0	1	0	0
GPR26	2849	broad.mit.edu	37	10	125434442	125434442	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:125434442C>T	uc001lhh.2	+	2	830	c.777C>T	c.(775-777)ATC>ATT	p.I259I		NM_153442	NP_703143	Q8NDV2	GPR26_HUMAN	G protein-coupled receptor 26	259	Helical; Name=6; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1		Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)				CCTATGTGATCACCAGGTGAG	0.567000													17	11					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	134623952	134623952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:134623952G>A	uc010qux.1	-	49	6803	c.6803C>T	c.(6802-6804)TCT>TTT	p.S2268F		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		TTCTGAAGGAGACGCACTGTT	0.622000													51	71					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	134659722	134659723	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:134659722_134659723CC>TT	uc010qux.1	-	36	5454_5455	c.5454_5455GG>AA	c.(5452-5457)TCGGCC>TCAACC	p.A1819T		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		GTCTCTGAGGCCGAGCAGCTCT	0.683000													9	26					0	0	1	0	0
KNDC1	85442	broad.mit.edu	37	10	135000021	135000021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:135000021C>T	uc001llz.1	+	6	1170	c.1169C>T	c.(1168-1170)CCC>CTC	p.P390L	KNDC1_uc001lma.1_Missense_Mutation_p.P325L	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	390					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		CCTGGGGTGCCCGGCAGTCCA	0.697000													11	10					0	0	1	0	0
ZNF511	118472	broad.mit.edu	37	10	135123718	135123718	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:135123718C>T	uc001lml.1	+	4	505	c.480C>T	c.(478-480)GAC>GAT	p.D160D	TUBGCP2_uc001lmg.1_5'Flank|TUBGCP2_uc010qvc.1_5'Flank|TUBGCP2_uc009ybk.1_5'Flank|TUBGCP2_uc010qvd.1_5'Flank|TUBGCP2_uc001lmh.1_Intron|ZNF511_uc001lmj.1_Silent_p.D160D|ZNF511_uc001lmk.1_Silent_p.D160D|ZNF511_uc001lmm.1_RNA			Q8NB15	ZN511_HUMAN	SubName: Full=cDNA FLJ78327; SubName: Full=Zinc finger protein 511, isoform CRA_d;	160	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		all cancers(32;7.56e-06)|OV - Ovarian serous cystadenocarcinoma(35;8.15e-06)|Epithelial(32;9.99e-06)		CCAGCAGAGACCGGAAGGATC	0.572000													96	82					0	0	1	0	0
NLRP6	171389	broad.mit.edu	37	11	284360	284360	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:284360G>A	uc010qvs.1	+	6	2332	c.2332G>A	c.(2332-2334)GAG>AAG	p.E778K	NLRP6_uc010qvt.1_Missense_Mutation_p.E777K	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	778	LRR 3.					cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		TATGCTGAGTGAGGGCCTAGC	0.692000													51	69					0	0	1	0	0
B4GALNT4	338707	broad.mit.edu	37	11	373820	373820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:373820G>A	uc001lpb.2	+	8	784	c.775G>A	c.(775-777)GAA>AAA	p.E259K		NM_178537	NP_848632	Q76KP1	B4GN4_HUMAN	beta	259	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			pancreas(1)	1		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGACCACGTGGAAGTGGGCGT	0.647000													34	128					0	0	1	0	0
ANO9	338440	broad.mit.edu	37	11	420825	420826	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:420825_420826GA>AT	uc001lpi.2	-	18	1610_1611	c.1525_1526TC>AT	c.(1525-1527)TCC>ATC	p.S509I	ANO9_uc001lph.2_Missense_Mutation_p.S202I|ANO9_uc010qvv.1_Missense_Mutation_p.S365I	NM_001012302	NP_001012302	A1A5B4	ANO9_HUMAN	tumor protein p53 inducible protein 5	509	Extracellular (Potential).					chloride channel complex	chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4						CCCGGACTCGGAGGCCCGCAGA	0.713000													11	21					0	0	1	0	0
DEAF1	10522	broad.mit.edu	37	11	679783	679783	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:679783G>A	uc001lqq.1	-	8	1724	c.1031C>T	c.(1030-1032)TCG>TTG	p.S344L	DEAF1_uc009ycf.1_RNA	NM_021008	NP_066288	O75398	DEAF1_HUMAN	deformed epidermal autoregulatory factor 1	344					embryonic skeletal system development|germ cell development|neural tube closure|regulation of mammary gland epithelial cell proliferation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|cytoplasm|extracellular region|nucleus	protein binding|zinc ion binding				0		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;1.76e-27)|Epithelial(43;8.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.55e-21)|BRCA - Breast invasive adenocarcinoma(625;4.83e-05)|Lung(200;0.0259)|LUSC - Lung squamous cell carcinoma(625;0.075)		CAGTGCCCCCGAGGTCGTGAT	0.652000													45	49					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1081518	1081518	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:1081518C>T	uc001lsx.1	+	12	1563	c.1536C>T	c.(1534-1536)CTC>CTT	p.L512L		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	512	VWFD 2.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	TCATGCAACTCTTTGTGACAC	0.647000													42	45					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1266729	1266729	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:1266729C>T	uc009ycr.1	+	49	10494	c.10368C>T	c.(10366-10368)CCC>CCT	p.P3456P	MUC5B_uc001ltb.2_Silent_p.P2876P	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	2873	7 X Cys-rich subdomain repeats.|Cys-rich subdomain 5.|Thr-rich.|HAT 1.			Missing (in Ref. 6; AAB61398).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GCTGTGAGCCCCAGTGTGCCT	0.677000													97	126					0	0	1	0	0
LOC650368	650368	broad.mit.edu	37	11	3430129	3430129	+	RNA	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:3430129C>T	uc010qxs.1	+	11		c.1228C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CAAATCCTTTCGAGCAGCGCC	0.547000													28	33					0	0	1	0	0
ART5	116969	broad.mit.edu	37	11	3661546	3661546	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:3661546G>T	uc001lyb.1	-	2	506	c.113C>A	c.(112-114)ACC>AAC	p.T38N	ART5_uc001lyc.1_Missense_Mutation_p.T38N|ART5_uc001lyd.2_Missense_Mutation_p.T38N|ART5_uc009yea.2_Missense_Mutation_p.T38N	NM_053017	NP_443750	Q96L15	NAR5_HUMAN	ADP-ribosyltransferase 5 precursor	38						extracellular region	NAD(P)+-protein-arginine ADP-ribosyltransferase activity			ovary(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0336)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACCCACATAGGTATCGTCAAA	0.597000													42	65					1.52319e-26	1.55363e-26	1	1	0
OR51S1	119692	broad.mit.edu	37	11	4870395	4870395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:4870395G>A	uc010qyo.1	-	1	44	c.44C>T	c.(43-45)TCA>TTA	p.S15L		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	15	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGGGGCCATTGAAGTGCTGCT	0.498000													68	103					0	0	1	0	0
OR52A1	23538	broad.mit.edu	37	11	5172831	5172832	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:5172831_5172832GG>AA	uc010qyy.1	-	1	768_769	c.768_769CC>TT	c.(766-771)CTCCTT>CTTTTT	p.L257F		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAGAAGGCAAGGAGGTAGAACT	0.426000													28	71					0	0	1	0	0
OR51B2	79345	broad.mit.edu	37	11	5345282	5345282	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:5345282G>A	uc001mao.1	-	1	301	c.246C>T	c.(244-246)ATC>ATT	p.I82I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	82	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCACCCATAGGATGCCCATTA	0.502000													39	43					0	0	1	0	0
OR56B1	387748	broad.mit.edu	37	11	5757934	5757934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:5757934C>T	uc001mbt.1	+	1	188	c.188C>T	c.(187-189)TCT>TTT	p.S63F	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|OR56B1_uc001mbs.1_Missense_Mutation_p.S63F|OR56B1_uc009yev.1_Missense_Mutation_p.S63F	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	63	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		CAGAACCCTTCTTTACAGCAG	0.498000													23	35					0	0	1	0	0
OR52N1	79473	broad.mit.edu	37	11	5809918	5809918	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:5809918C>T	uc010qzo.1	-	1	129	c.129G>A	c.(127-129)GGG>GGA	p.G43G	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001913	NP_001001913	Q8NH53	O52N1_HUMAN	olfactory receptor, family 52, subfamily N,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		GGCCGAAGTTCCCTGTAATAG	0.463000													23	33					0	0	1	0	0
OR2AG1	144125	broad.mit.edu	37	11	6806653	6806654	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:6806653_6806654CC>TT	uc001mer.1	+	1	385_386	c.385_386CC>TT	c.(385-387)CCT>TTT	p.P129F		NM_001004489	NP_001004489	Q9H205	O2AG1_HUMAN	olfactory receptor, family 2, subfamily AG,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.19e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CATTTGTCATCCTCTGACATAC	0.535000													25	58					0	0	1	0	0
CYB5R2	51700	broad.mit.edu	37	11	7688983	7688983	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:7688983C>T	uc001mfm.2	-	7	772	c.534G>A	c.(532-534)AGG>AGA	p.R178R	CYB5R2_uc001mfn.2_RNA|CYB5R2_uc009yfk.2_Silent_p.R178R	NM_016229	NP_057313	Q6BCY4	NB5R2_HUMAN	cytochrome b5 reductase b5R.2	178	FAD (By similarity).				sterol biosynthetic process	membrane|soluble fraction	cytochrome-b5 reductase activity				0				Epithelial(150;5.48e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TGAGGGACATCCTGGTCCTGT	0.537000													165	210					0	0	1	0	0
NLRP10	338322	broad.mit.edu	37	11	7982294	7982294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:7982294G>A	uc001mfv.1	-	2	882	c.865C>T	c.(865-867)CTC>TTC	p.L289F		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	289	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GTGGTGATGAGAAGGGAGCAC	0.542000													85	110					0	0	1	0	0
STK33	65975	broad.mit.edu	37	11	8494734	8494734	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:8494734C>T	uc001mgi.1	-	2	1234	c.315G>A	c.(313-315)AGG>AGA	p.R105R	STK33_uc001mgj.1_Silent_p.R105R|STK33_uc001mgk.1_Silent_p.R105R|STK33_uc010rbn.1_Silent_p.R64R|STK33_uc001mgl.3_Intron|STK33_uc009yfp.2_Intron	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	105						Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		CATTCTCAATCCTTATGTGAG	0.403000													51	84					0	0	1	0	0
C11orf16	56673	broad.mit.edu	37	11	8948716	8948716	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:8948716C>T	uc001mhb.3	-	4	454	c.330G>A	c.(328-330)GAG>GAA	p.E110E	C11orf16_uc001mhc.3_Silent_p.E110E	NM_020643	NP_065694	Q9NQ32	CK016_HUMAN	hypothetical protein LOC56673	110										upper_aerodigestive_tract(1)|pancreas(1)	2				Epithelial(150;4.11e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0234)		CCCCCTGTCTCTCCAGCTGTG	0.542000													17	18					0	0	1	0	0
GALNTL4	374378	broad.mit.edu	37	11	11400710	11400711	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:11400710_11400711GG>AA	uc001mjo.2	-	4	1117_1118	c.696_697CC>TT	c.(694-699)ATCCGC>ATTTGC	p.R233C		NM_198516	NP_940918	Q6P9A2	GLTL4_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	233	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0				all cancers(16;3.67e-05)|Epithelial(150;0.000184)		ACCCTGGAGCGGATGAGGCCTT	0.584000													23	36					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17424266	17424266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:17424266G>A	uc001mnc.2	-	29	3718	c.3592C>T	c.(3592-3594)CCA>TCA	p.P1198S		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1198	ABC transmembrane type-1 2.|Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GAGAGAAGTGGAAGCTGGGTG	0.413000													123	160					0	0	1	0	0
IGSF22	283284	broad.mit.edu	37	11	18740248	18740248	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:18740248C>T	uc009yht.2	-	8	914	c.724G>A	c.(724-726)GAC>AAC	p.D242N	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	242	Ig-like 2.									ovary(4)|large_intestine(2)|kidney(1)	7						GTCTCTTTGTCTTCCAGGGGC	0.473000													128	163					0	0	1	0	0
SLC6A5	9152	broad.mit.edu	37	11	20622860	20622860	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:20622860G>A	uc001mqd.2	+	2	462	c.189G>A	c.(187-189)CAG>CAA	p.Q63Q	SLC6A5_uc009yic.2_5'UTR	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	63	Cytoplasmic (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	AAACTTTCCAGTCAGCGGACG	0.731000													12	11					0	0	1	0	0
SLC6A5	9152	broad.mit.edu	37	11	20676348	20676348	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:20676348C>T	uc001mqd.2	+	16	2601	c.2328C>T	c.(2326-2328)CCC>CCT	p.P776P	SLC6A5_uc009yic.2_Silent_p.P541P	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	776	Cytoplasmic (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	TGATCGACCCCTTGGGAACCT	0.557000													136	166					0	0	1	0	0
ANO5	203859	broad.mit.edu	37	11	22247572	22247572	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:22247572C>G	uc001mqi.2	+	6	654	c.337C>G	c.(337-339)CTT>GTT	p.L113V	ANO5_uc001mqj.2_Missense_Mutation_p.L112V	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	113	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						AAAAACAGGTCTTGAGTTGGA	0.323000													9	22					0	0	1	0	0
SLC5A12	159963	broad.mit.edu	37	11	26725413	26725413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:26725413C>T	uc001mra.2	-	5	920	c.607G>A	c.(607-609)GGA>AGA	p.G203R	SLC5A12_uc001mrb.2_RNA|SLC5A12_uc001mrc.3_Missense_Mutation_p.G203R	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	203	Extracellular (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						TGAGTTGATCCTTGAATGAGA	0.393000													93	107					0	0	1	0	0
CCDC73	493860	broad.mit.edu	37	11	32739683	32739683	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:32739683A>G	uc001mtv.2	-	3	190	c.146T>C	c.(145-147)ATT>ACT	p.I49T	CCDC73_uc001mtw.1_Missense_Mutation_p.I49T|CCDC73_uc009yjt.2_Missense_Mutation_p.I49T	NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	49										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					TTCATAATGAATTTCTGCTTC	0.189000													44	49					0	0	1	0	0
ABTB2	25841	broad.mit.edu	37	11	34181823	34181823	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:34181823C>T	uc001mvl.1	-	12	2147	c.1917G>A	c.(1915-1917)GAG>GAA	p.E639E		NM_145804	NP_665803	Q8N961	ABTB2_HUMAN	ankyrin repeat and BTB (POZ) domain containing	639							DNA binding			central_nervous_system(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0508)|all_hematologic(20;0.0691)				TCTTCCGGATCTCTGGGATGC	0.642000													42	63					0	0	1	0	0
PAMR1	25891	broad.mit.edu	37	11	35456311	35456311	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:35456311C>T	uc001mwg.2	-	10	1418	c.1375G>A	c.(1375-1377)GGG>AGG	p.G459R	PAMR1_uc001mwf.2_Missense_Mutation_p.G476R|PAMR1_uc010rew.1_Missense_Mutation_p.G348R|PAMR1_uc010rex.1_Missense_Mutation_p.G419R	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	459	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						CAGCGCAACCCTTGGGTCTTT	0.542000													94	118					0	0	1	0	0
TRIM44	54765	broad.mit.edu	37	11	35747489	35747489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:35747489G>A	uc001mwi.2	+	3	1072	c.765G>A	c.(763-765)ATG>ATA	p.M255I		NM_017583	NP_060053	Q96DX7	TRI44_HUMAN	DIPB protein	255						intracellular	protein binding|zinc ion binding			skin(1)	1	all_lung(20;0.0317)|Lung NSC(22;0.0661)|all_epithelial(35;0.115)	all_hematologic(20;0.107)				GGGACCAAATGAAGATGTTTA	0.408000													17	24					0	0	1	0	0
COMMD9	29099	broad.mit.edu	37	11	36302279	36302279	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:36302279G>A	uc001mwn.3	-	2	197	c.160C>T	c.(160-162)CAG>TAG	p.Q54*	COMMD9_uc009ykj.2_Intron|COMMD9_uc010rfb.1_Nonsense_Mutation_p.Q54*	NM_014186	NP_054905	Q9P000	COMD9_HUMAN	COMM domain containing 9 isoform 1	54										ovary(1)	1	all_lung(20;0.211)	all_hematologic(20;0.107)				GCCTCCTCCTGGGTCACAGAC	0.463000													58	78					0	0	1	0	0
LRRC4C	57689	broad.mit.edu	37	11	40137722	40137722	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:40137722G>A	uc001mxa.1	-	2	2085	c.121C>T	c.(121-123)CTG>TTG	p.L41L	LRRC4C_uc001mxc.1_Silent_p.L37L|LRRC4C_uc001mxd.1_Silent_p.L37L|LRRC4C_uc001mxb.1_Silent_p.L37L	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	41					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				GCCCGCACCAGACCAGCCACC	0.537000													15	13					0	0	1	0	0
GYLTL1B	120071	broad.mit.edu	37	11	45949594	45949594	+	Silent	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:45949594G>T	uc001nbv.1	+	12	1839	c.1728G>T	c.(1726-1728)CTG>CTT	p.L576L	GYLTL1B_uc001nbw.1_Silent_p.L545L|GYLTL1B_uc001nbx.1_Silent_p.L576L|GYLTL1B_uc001nby.1_Silent_p.L259L|GYLTL1B_uc001nbz.1_5'UTR	NM_152312	NP_689525	Q8N3Y3	LARG2_HUMAN	glycosyltransferase-like 1B	576	Lumenal (Potential).				muscle cell homeostasis	Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.226)		TGGCCTTGCTGGATGCGGGCA	0.632000													43	73					1.11015e-26	1.13309e-26	1	1	0
PSMC3	5702	broad.mit.edu	37	11	47444150	47444150	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:47444150C>G	uc001nfh.2	-	8	1053	c.859G>C	c.(859-861)GAG>CAG	p.E287Q	PSMC3_uc009ylr.1_Missense_Mutation_p.E245Q	NM_002804	NP_002795	P17980	PRS6A_HUMAN	proteasome 26S ATPase subunit 3	287					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|nucleoside-triphosphatase activity|protein binding|transcription coactivator activity|transcription corepressor activity			ovary(4)	4				Lung(87;0.0932)|BRCA - Breast invasive adenocarcinoma(625;0.13)		GCATCCAACTCATCAATGAAG	0.567000													51	189					0	0	1	0	0
NDUFS3	4722	broad.mit.edu	37	11	47602408	47602408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:47602408G>A	uc001nga.2	+	4	335	c.253G>A	c.(253-255)GAG>AAG	p.E85K	NDUFS3_uc001nft.3_Missense_Mutation_p.E64K|KBTBD4_uc001nfw.1_5'Flank|KBTBD4_uc001nfx.2_5'Flank|KBTBD4_uc001nfz.2_5'Flank|KBTBD4_uc001nfy.2_5'Flank|NDUFS3_uc010rhn.1_Missense_Mutation_p.E85K	NM_004551	NP_004542	O75489	NDUS3_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 3	85					induction of apoptosis|mitochondrial electron transport, NADH to ubiquinone|negative regulation of cell growth|reactive oxygen species metabolic process|transport	mitochondrial respiratory chain complex I	electron carrier activity|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	CAATGAGTTAGAGGTCTGTAT	0.498000													122	206					0	0	1	0	0
OR4X1	390113	broad.mit.edu	37	11	48285489	48285489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:48285489C>T	uc010rht.1	+	1	77	c.77C>T	c.(76-78)TCT>TTT	p.S26F		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						AGGGTCATTTCTGTGATGTTT	0.463000													32	37					0	0	1	0	0
OR4C3	256144	broad.mit.edu	37	11	48347291	48347291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:48347291G>A	uc010rhv.1	+	1	799	c.799G>A	c.(799-801)GCC>ACC	p.A267T		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	240	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CACCTGTGGAGCCCACTTCAT	0.438000													46	85					0	0	1	0	0
OR4A16	81327	broad.mit.edu	37	11	55110739	55110739	+	Silent	SNP	G	A	A	rs78513473		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:55110739G>A	uc010rie.1	+	1	63	c.63G>A	c.(61-63)GTG>GTA	p.V21V		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						ATCCTGATGTGAAAAAAACAT	0.413000													19	28					0	0	1	0	0
OR4S2	219431	broad.mit.edu	37	11	55418502	55418502	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:55418502C>T	uc001nhs.1	+	1	123	c.123C>T	c.(121-123)CTC>CTT	p.L41L		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				TGGGAAATCTCCTCATCATGC	0.393000													51	66					0	0	1	0	0
OR5D13	390142	broad.mit.edu	37	11	55541105	55541105	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:55541105C>T	uc010ril.1	+	1	192	c.192C>T	c.(190-192)TTC>TTT	p.F64F		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				TGTGCTTTTTCCTTAGTCACT	0.398000													37	51					0	0	1	0	0
OR5I1	10798	broad.mit.edu	37	11	55703593	55703593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:55703593G>A	uc010ris.1	-	1	284	c.284C>T	c.(283-285)TCC>TTC	p.S95F		NM_006637	NP_006628	Q13606	OR5I1_HUMAN	olfactory receptor, family 5, subfamily I,	95	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCCATAATAGGAAATAGATTT	0.408000													7	14					0	0	1	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735466	55735466	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:55735466G>A	uc010rit.1	-	1	474	c.474C>T	c.(472-474)CCC>CCT	p.P158P		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	158	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					TTCCGCAAAAGGGCAAAAGGA	0.393000													10	57					0	0	1	0	0
OR8I2	120586	broad.mit.edu	37	11	55861593	55861593	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:55861593G>A	uc010rix.1	+	1	810	c.810G>A	c.(808-810)GCG>GCA	p.A270A		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	270	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					TGACCCAGGCGCAGGTGGCAT	0.453000													4	73					0	0	1	0	0
OR8H2	390151	broad.mit.edu	37	11	55872770	55872770	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:55872770G>A	uc010riy.1	+	1	252	c.252G>A	c.(250-252)GCG>GCA	p.A84A		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	84	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					AAACCTTAGCGAACTTACTGA	0.438000										HNSCC(53;0.14)			194	241					0	0	1	0	0
OR8H1	219469	broad.mit.edu	37	11	56058260	56058260	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:56058260G>A	uc010rje.1	-	1	279	c.279C>T	c.(277-279)TTC>TTT	p.F93F		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					AGCAGCCCATGAAGGAAATAT	0.403000													170	180					0	0	1	0	0
APLNR	187	broad.mit.edu	37	11	57003998	57003999	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:57003998_57003999CC>TT	uc001njo.2	-	1	929_930	c.480_481GG>AA	c.(478-483)CTGGCC>CTAACC	p.A161T	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	161	Helical; Name=4; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						ACAGGCATGGCCAGGAGGGCGG	0.634000													25	56					0	0	1	0	0
ZDHHC5	25921	broad.mit.edu	37	11	57466668	57466668	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:57466668C>T	uc001nkx.1	+	11	3016	c.1760C>T	c.(1759-1761)TCA>TTA	p.S587L	ZDHHC5_uc001nky.1_Missense_Mutation_p.S534L|ZDHHC5_uc001nkz.1_Missense_Mutation_p.S401L	NM_015457	NP_056272	Q9C0B5	ZDHC5_HUMAN	zinc finger, DHHC domain containing 5	587						integral to membrane	acyltransferase activity|zinc ion binding			skin(1)	1						AGTTCCTCCTCAGATGATTCA	0.612000													110	137					0	0	1	0	0
ZP1	22917	broad.mit.edu	37	11	60637284	60637284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:60637284C>T	uc001nqd.2	+	3	613	c.593C>T	c.(592-594)TCC>TTC	p.S198F	ZP1_uc001nqe.2_5'Flank	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	198	Extracellular (Potential).				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						GCTTTACCATCCCCTGGACCT	0.612000													49	69					0	0	1	0	0
CD6	923	broad.mit.edu	37	11	60776166	60776166	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:60776166C>T	uc001nqq.2	+	4	853	c.630C>T	c.(628-630)GCC>GCT	p.A210A	CD6_uc009yni.2_Silent_p.A210A|CD6_uc009ynj.2_Silent_p.A210A|CD6_uc001nqp.2_Silent_p.A210A|CD6_uc001nqr.2_Silent_p.A210A|CD6_uc001nqs.2_RNA|CD6_uc001nqt.2_Silent_p.A210A	NM_006725	NP_006716	P30203	CD6_HUMAN	CD6 molecule precursor	210	SRCR 2.|Extracellular (Potential).				cell adhesion	cell surface|integral to plasma membrane	scavenger receptor activity			pancreas(1)	1						CAGTCCAGGCCCTGCCCGGCT	0.692000													9	17					0	0	1	0	0
DDB1	1642	broad.mit.edu	37	11	61096997	61096997	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:61096997C>T	uc001nrc.3	-	4	613	c.387G>A	c.(385-387)CGG>CGA	p.R129R	DDB1_uc010rle.1_Intron|DDB1_uc010rlf.1_Silent_p.R129R|DDB1_uc010rlg.1_5'Flank|DDB1_uc001nrd.2_Silent_p.R129R|DDB1_uc009ynl.1_Intron	NM_001923	NP_001914	Q16531	DDB1_HUMAN	damage-specific DNA binding protein 1	129	Interaction with CDT1.				cell cycle checkpoint|interspecies interaction between organisms|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|cytoplasm|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4						GGCCAATCATCCGGCACTCAG	0.512000								NER					22	30					0	0	1	0	0
DAK	26007	broad.mit.edu	37	11	61110896	61110896	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:61110896C>T	uc001nre.2	+	11	1205	c.948C>T	c.(946-948)CTC>CTT	p.L316L	DDB1_uc010rlf.1_5'Flank|DAK_uc009ynm.1_Silent_p.L246L	NM_015533	NP_056348	Q3LXA3	DHAK_HUMAN	dihydroxyacetone kinase 2	316	DhaK.				glycerol metabolic process	cytosol	ATP binding|FAD-AMP lyase (cyclizing) activity|glycerone kinase activity|metal ion binding				0						CTCTCACCCTCCTGCTGGTGG	0.587000													125	159					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62295535	62295535	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:62295535G>A	uc001ntl.2	-	5	6654	c.6354C>T	c.(6352-6354)TCC>TCT	p.S2118S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	2118					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CATCAGGCATGGAGATCTTGG	0.512000													175	229					0	0	1	0	0
EEF1G	1937	broad.mit.edu	37	11	62339039	62339039	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:62339039G>A	uc001ntm.1	-	4	497	c.351C>T	c.(349-351)ACC>ACT	p.T117T	EEF1G_uc010rlw.1_Silent_p.T167T|EEF1G_uc001ntn.1_5'UTR	NM_001404	NP_001395	P26641	EF1G_HUMAN	eukaryotic translation elongation factor 1	117	GST C-terminal.				response to virus	cytosol|eukaryotic translation elongation factor 1 complex	protein binding|translation elongation factor activity				0						TGATGCCCAAGGTGGGGAACA	0.572000													5	12					0	0	1	0	0
ROM1	6094	broad.mit.edu	37	11	62380861	62380861	+	Silent	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:62380861C>A	uc001ntv.2	+	1	649	c.108C>A	c.(106-108)CTC>CTA	p.L36L	EML3_uc001ntr.1_5'Flank|EML3_uc001nts.1_5'Flank|EML3_uc001ntt.1_5'Flank|EML3_uc001ntu.1_5'Flank|EML3_uc010rly.1_5'Flank|EML3_uc009yny.1_5'Flank	NM_000327	NP_000318	Q03395	ROM1_HUMAN	retinal outer segment membrane protein 1	36	Helical; (Potential).				cell adhesion|visual perception	integral to plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						GCGTCATCCTCCTCTGTAGTG	0.687000													14	17					1.64113e-05	1.65192e-05	1	1	0
INTS5	80789	broad.mit.edu	37	11	62416967	62416967	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:62416967C>A	uc001nud.2	-	2	638	c.585G>T	c.(583-585)CAG>CAT	p.Q195H	GANAB_uc001nua.2_5'Flank|GANAB_uc001nub.2_5'Flank|GANAB_uc001nuc.2_5'Flank|GANAB_uc010rma.1_5'Flank|GANAB_uc010rmb.1_5'Flank	NM_030628	NP_085131	Q6P9B9	INT5_HUMAN	integrator complex subunit 5	195					snRNA processing	integral to membrane|integrator complex	protein binding			ovary(2)	2						CCGAGAGGCACTGCACATAGA	0.542000													96	103					2.25818e-43	2.32187e-43	1	1	0
SLC22A25	387601	broad.mit.edu	37	11	62997029	62997029	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:62997029G>A	uc001nwr.1	-	1	96	c.96C>T	c.(94-96)TAC>TAT	p.Y32Y	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Silent_p.Y32Y	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	32	Extracellular (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						GAGTTTGATGGTATACTATGA	0.463000													55	75					0	0	1	0	0
SLC22A10	387775	broad.mit.edu	37	11	63057884	63057884	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:63057884C>T	uc009yor.2	+	1	455	c.247C>T	c.(247-249)CTG>TTG	p.L83L	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Silent_p.L31L	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	83	Extracellular (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						AGACTCAAATCTGAGGCCAGA	0.498000													53	81					0	0	1	0	0
CCDC88B	283234	broad.mit.edu	37	11	64112567	64112567	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:64112567G>A	uc001nzy.2	+	14	2598	c.2554G>A	c.(2554-2556)GAG>AAG	p.E852K	CCDC88B_uc009ypo.1_Missense_Mutation_p.E849K|CCDC88B_uc001nzz.1_Missense_Mutation_p.E501K	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	852	Potential.				microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						GCTGGAGAGCGAGGGCCGCCA	0.726000													5	8					0	0	1	0	0
SYVN1	84447	broad.mit.edu	37	11	64900542	64900543	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:64900542_64900543GG>AA	uc001odb.2	-	4	322_323	c.228_229CC>TT	c.(226-231)CACCTT>CATTTT	p.L77F	SYVN1_uc001odc.2_Missense_Mutation_p.L77F|SYVN1_uc009yqc.2_Missense_Mutation_p.L77F	NM_172230	NP_757385	Q86TM6	SYVN1_HUMAN	synoviolin 1 isoform b	77	Cytoplasmic (Potential).				ER-associated protein catabolic process|response to stress	endoplasmic reticulum membrane|integral to membrane|nucleus	acid-amino acid ligase activity|protein binding|zinc ion binding			ovary(1)	1						CGTTCCAGAAGGTGCTGGGGGC	0.550000													48	71					0	0	1	0	0
MALAT1	378938	broad.mit.edu	37	11	65266138	65266138	+	RNA	SNP	A	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:65266138A>T	uc010roh.1	+	1		c.906A>T				NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TCACACTTTAATCTTCCTTCA	0.458000													46	96					0	0	1	0	0
MALAT1	378938	broad.mit.edu	37	11	65268401	65268401	+	RNA	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:65268401T>C	uc010roh.1	+	1		c.3169T>C			uc001ody.2_RNA|MALAT1_uc001odz.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TTTTCAGGCTTATACTCATGA	0.403000													11	56					0	0	1	0	0
MAP3K11	4296	broad.mit.edu	37	11	65366005	65366005	+	Silent	SNP	A	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:65366005A>T	uc001oew.2	-	10	2794	c.2301T>A	c.(2299-2301)CCT>CCA	p.P767P	KCNK7_uc001oeq.2_5'Flank|KCNK7_uc001oer.2_5'Flank|KCNK7_uc001oes.2_5'Flank|KCNK7_uc001oeu.2_5'Flank|MAP3K11_uc001oev.2_Silent_p.P183P|MAP3K11_uc010rol.1_Silent_p.P510P|MAP3K11_uc001oex.1_Silent_p.P256P	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	767	Pro-rich.				activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity			breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						GCGAGGGCCGAGGTCGGCTGA	0.682000													22	29					0	0	1	0	0
DPP3	10072	broad.mit.edu	37	11	66258746	66258746	+	Silent	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:66258746G>T	uc001oig.1	+	7	752	c.690G>T	c.(688-690)GTG>GTT	p.V230V	DPP3_uc001oif.1_Silent_p.V230V|DPP3_uc010rpe.1_Silent_p.V219V	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	230					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						ACTCTGAGGTGACTTCCAAGC	0.557000											OREG0021109	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	106	113					1.6696e-61	1.72132e-61	1	1	0
KDM2A	22992	broad.mit.edu	37	11	66999061	66999061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:66999061C>T	uc001ojw.2	+	12	1973	c.1109C>T	c.(1108-1110)TCT>TTT	p.S370F	KDM2A_uc001ojx.2_RNA|KDM2A_uc001ojy.2_Missense_Mutation_p.S64F	NM_012308	NP_036440	Q9Y2K7	KDM2A_HUMAN	F-box and leucine-rich repeat protein 11	370					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			ovary(4)|lung(3)|breast(1)|skin(1)	9						GGGTTGGAGTCTGGGAATGGG	0.478000													11	18					0	0	1	0	0
CORO1B	57175	broad.mit.edu	37	11	67208889	67208890	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:67208889_67208890CA>AG	uc001olj.1	-	4	586_587	c.550_551TG>CT	c.(550-552)TGG>CTG	p.W184L	CORO1B_uc009yrs.1_RNA|CORO1B_uc001olk.1_Missense_Mutation_p.W184L|CORO1B_uc009yrt.1_RNA|CORO1B_uc009yru.1_RNA|CORO1B_uc001oll.1_Missense_Mutation_p.W184L|CORO1B_uc010rps.1_Missense_Mutation_p.W184L|CORO1B_uc009yrv.1_3'UTR	NM_020441	NP_065174	Q9BR76	COR1B_HUMAN	coronin, actin binding protein, 1B	184	WD 3.				actin cytoskeleton organization	actin cytoskeleton|cytoplasm	actin filament binding			large_intestine(1)|ovary(1)	2			BRCA - Breast invasive adenocarcinoma(15;3.26e-06)			ATTGTGGTTCCAGCTGACATTG	0.604000													84	112					0	0	1	0	0
CDK2AP2	10263	broad.mit.edu	37	11	67274939	67274939	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:67274939G>A	uc001oma.2	-	3	759	c.210C>T	c.(208-210)TCC>TCT	p.S70S	PITPNM1_uc001oly.2_5'Flank|PITPNM1_uc001olz.2_5'Flank|CDK2AP2_uc009yry.2_RNA|CDK2AP2_uc001omb.2_Silent_p.S79S	NM_005851	NP_005842	O75956	CDKA2_HUMAN	cyclin-dependent kinase 2 associated protein 2	70											0						AGGTGCTCTGGGAGCCCTGGG	0.612000													85	103					0	0	1	0	0
CHKA	1119	broad.mit.edu	37	11	67829480	67829480	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:67829480G>A	uc001onj.2	-	11	1468	c.1254C>T	c.(1252-1254)TTC>TTT	p.F418F	CHKA_uc001onk.2_Silent_p.F400F|uc001onl.1_5'Flank	NM_001277	NP_001268	P35790	CHKA_HUMAN	choline kinase alpha isoform a	418					lipid transport|phosphatidylethanolamine biosynthetic process	cytoplasm	ATP binding|choline kinase activity|drug binding|ethanolamine kinase activity|signal transducer activity			ovary(1)|central_nervous_system(1)	2					Choline(DB00122)	GTCCCCAGAGGAAATGAGATG	0.368000													9	11					0	0	1	0	0
PPFIA1	8500	broad.mit.edu	37	11	70178196	70178196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:70178196C>T	uc001opo.2	+	9	1406	c.1208C>T	c.(1207-1209)TCC>TTC	p.S403F	PPFIA1_uc001opn.1_Missense_Mutation_p.S403F|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opq.1_RNA	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	403	Potential.				cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			GCAGCGCTTTCCAAGGTAGTG	0.567000													108	127					0	0	1	0	0
PPFIA1	8500	broad.mit.edu	37	11	70222682	70222683	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:70222682_70222683GG>AA	uc001opo.2	+	25	3558_3559	c.3360_3361GG>AA	c.(3358-3363)ATGGGG>ATAAGG	p.1120_1121MG>IR	PPFIA1_uc001opn.1_Missense_Mutation_p.1120_1121MG>IR|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opr.2_Missense_Mutation_p.259_260MG>IR|PPFIA1_uc001ops.2_Missense_Mutation_p.159_160MG>IR|uc001opt.1_Intron	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	1120_1121				GTD -> PEF (in Ref. 4; BAA08353).	cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			TTTTGGTCATGGGGACTGATAG	0.332000													65	121					0	0	1	0	0
NUMA1	4926	broad.mit.edu	37	11	71715819	71715819	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:71715819G>C	uc001orl.1	-	24	6045	c.5873C>G	c.(5872-5874)ACT>AGT	p.T1958S	IL18BP_uc009ysu.1_Intron|NUMA1_uc001orj.2_Missense_Mutation_p.T140S|NUMA1_uc009ysw.1_Missense_Mutation_p.T1525S|NUMA1_uc001ork.1_Missense_Mutation_p.T822S|NUMA1_uc001orm.1_Missense_Mutation_p.T1944S	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	1958					G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						GGGGTCTCCAGTTTTCATCTC	0.607000			T	RARA	APL								47	58					0	0	1	0	0
CLNS1A	1207	broad.mit.edu	37	11	77330736	77330736	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:77330736C>T	uc001oyk.2	-	6	743	c.651G>A	c.(649-651)GGG>GGA	p.G217G	CLNS1A_uc001oyl.2_Silent_p.G183G	NM_001293	NP_001284	P54105	ICLN_HUMAN	chloride channel, nucleotide-sensitive, 1A	217					blood circulation|cell volume homeostasis|chloride transport|ncRNA metabolic process|spliceosomal snRNP assembly	cytoskeleton|cytosol|nucleus|plasma membrane	protein binding			ovary(1)	1	all_cancers(14;5.43e-17)|all_epithelial(13;1.78e-19)		Epithelial(5;1.02e-48)|BRCA - Breast invasive adenocarcinoma(5;1.4e-30)			CCACCTCCATCCCATCTAAAC	0.388000													52	56					0	0	1	0	0
DLG2	1740	broad.mit.edu	37	11	83195190	83195190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:83195190C>T	uc001paj.2	-	17	2263	c.1960G>A	c.(1960-1962)GAA>AAA	p.E654K	DLG2_uc001pai.2_Intron|DLG2_uc010rsy.1_Intron|DLG2_uc010rsz.1_Intron|DLG2_uc010rta.1_Intron|DLG2_uc001pak.2_Missense_Mutation_p.E759K|DLG2_uc010rtb.1_Missense_Mutation_p.E621K|DLG2_uc010rsw.1_Intron|DLG2_uc010rsx.1_Intron	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	654						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				TCACTGGTTTCCTGCTCACTC	0.408000													39	51					0	0	1	0	0
NAALAD2	10003	broad.mit.edu	37	11	89891355	89891355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:89891355C>T	uc001pdf.3	+	7	948	c.839C>T	c.(838-840)CCC>CTC	p.P280L	NAALAD2_uc009yvx.2_Missense_Mutation_p.P280L|NAALAD2_uc009yvy.2_Intron|NAALAD2_uc001pdd.2_Missense_Mutation_p.P280L|NAALAD2_uc001pde.2_Intron	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	280	Extracellular (Potential).|NAALADase.				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				GTGGGAATCCCCCGAATACCT	0.279000													83	124					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92085622	92085622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:92085622C>T	uc001pdj.3	+	1	361	c.344C>T	c.(343-345)GCC>GTC	p.A115V		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	115	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GGCAATTCTGCCATATTAAAT	0.378000										TCGA Ovarian(4;0.039)			13	18					0	0	1	0	0
CEP57	9702	broad.mit.edu	37	11	95552020	95552020	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:95552020C>T	uc001pfp.1	+	6	872	c.651C>T	c.(649-651)CTC>CTT	p.L217L	CEP57_uc001pfo.1_Silent_p.L217L|CEP57_uc010ruh.1_Silent_p.L208L|CEP57_uc010rui.1_Silent_p.L217L|CEP57_uc009ywn.1_Silent_p.L65L|CEP57_uc001pfq.1_Silent_p.L217L|CEP57_uc001pfr.1_Silent_p.L65L	NM_014679	NP_055494	Q86XR8	CEP57_HUMAN	translokin	217	Potential.|centrosome localization domain (CLD) (By similarity).				fibroblast growth factor receptor signaling pathway|G2/M transition of mitotic cell cycle|protein import into nucleus, translocation|spermatid development	centrosome|cytosol|Golgi apparatus|microtubule|nucleus	fibroblast growth factor binding|protein homodimerization activity			ovary(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				AAGCAAAACTCCATGAAGAAG	0.353000									Mosaic_Variegated_Aneuploidy_Syndrome				25	40					0	0	1	0	0
MMP1	4312	broad.mit.edu	37	11	102668786	102668786	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:102668786C>T	uc001phi.2	-	1	181	c.38G>A	c.(37-39)TGG>TAG	p.W13*	uc001phh.1_RNA|MMP1_uc010ruv.1_Intron	NM_002421	NP_002412	P03956	MMP1_HUMAN	matrix metalloproteinase 1 isoform 1	13					blood coagulation|collagen catabolic process|interspecies interaction between organisms|leukocyte migration|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)|lung(1)	4	all_epithelial(12;0.0127)	all_neural(303;0.000318)|all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.072)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.233)	OV - Ovarian serous cystadenocarcinoma(223;1.82e-07)|Epithelial(105;1.51e-06)|BRCA - Breast invasive adenocarcinoma(274;0.014)		CACCACACCCCAGAACAGCAG	0.498000													23	35					0	0	1	0	0
MMP13	4322	broad.mit.edu	37	11	102824932	102824932	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:102824932C>G	uc001phl.2	-	4	618	c.590G>C	c.(589-591)GGA>GCA	p.G197A		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	197					collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		ATGGGCATCTCCTCCATAATT	0.423000													7	39					0	0	1	0	0
C11orf65	160140	broad.mit.edu	37	11	108277597	108277597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:108277597G>A	uc001pkh.2	-	5	392	c.322C>T	c.(322-324)CCA>TCA	p.P108S	C11orf65_uc010rvx.1_Missense_Mutation_p.P59S|C11orf65_uc009yxu.1_RNA	NM_152587	NP_689800	Q8NCR3	CK065_HUMAN	hypothetical protein LOC160140	108										ovary(1)	1		all_cancers(61;1.38e-11)|all_epithelial(67;3.16e-07)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;8.21e-06)|BRCA - Breast invasive adenocarcinoma(274;1.01e-05)|all cancers(92;0.000189)|Colorectal(284;0.114)|OV - Ovarian serous cystadenocarcinoma(223;0.144)		TGCTTTGCTGGAAGTTTTGCA	0.368000													38	58					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108380889	108380889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:108380889G>A	uc001pkk.2	-	6	5456	c.5345C>T	c.(5344-5346)TCT>TTT	p.S1782F	EXPH5_uc010rvy.1_Missense_Mutation_p.S1594F|EXPH5_uc010rvz.1_Missense_Mutation_p.S1626F|EXPH5_uc010rwa.1_Missense_Mutation_p.S1706F	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1782					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		CCACTCCAGAGATGAAGCACT	0.478000													62	67					0	0	1	0	0
DLAT	1737	broad.mit.edu	37	11	111896274	111896274	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:111896274G>A	uc001pmo.2	+	1	737	c.78G>A	c.(76-78)CAG>CAA	p.Q26Q	DLAT_uc009yyk.1_Silent_p.Q26Q|DLAT_uc010rwr.1_Silent_p.Q26Q	NM_001931	NP_001922	P10515	ODP2_HUMAN	dihydrolipoamide S-acetyltransferase precursor	26					glycolysis|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial pyruvate dehydrogenase complex	dihydrolipoyllysine-residue acetyltransferase activity|protein binding				0		all_cancers(61;4.53e-11)|all_epithelial(67;2.76e-06)|Melanoma(852;9.42e-06)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Breast(348;0.0512)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)		Epithelial(105;4.87e-07)|BRCA - Breast invasive adenocarcinoma(274;6.83e-07)|all cancers(92;9.63e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0557)	NADH(DB00157)	CGGCCTTGCAGGAGGTACCCG	0.682000													65	73					0	0	1	0	0
BCO2	83875	broad.mit.edu	37	11	112085529	112085529	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:112085529G>A	uc001pnf.2	+	10	1494	c.1377G>A	c.(1375-1377)AAG>AAA	p.K459K	BCO2_uc001pne.1_Silent_p.K286K|BCO2_uc001png.2_Silent_p.K386K|BCO2_uc001pnh.2_Silent_p.K425K|BCO2_uc010rwt.1_Silent_p.K354K|BCO2_uc009yyn.2_Silent_p.K425K|BCO2_uc001pni.2_Silent_p.K425K	NM_031938	NP_114144	Q9BYV7	BCDO2_HUMAN	beta-carotene dioxygenase 2 isoform a	459					carotene metabolic process|retinal metabolic process|retinoic acid metabolic process		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						ACCTAGAAAAGGAAGGAGGCA	0.378000													48	45					0	0	1	0	0
DSCAML1	57453	broad.mit.edu	37	11	117392041	117392041	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:117392041C>T	uc001prh.1	-	6	1199	c.1197G>A	c.(1195-1197)ACG>ACA	p.T399T	DSCAML1_uc001pri.1_Silent_p.T203T	NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	339	Extracellular (Potential).|Ig-like C2-type 4.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CTGGGGAGCCCGTCAGGGCAC	0.632000													47	68					0	0	1	0	0
THY1	7070	broad.mit.edu	37	11	119290157	119290157	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:119290157G>A	uc001pwq.2	-	3	481	c.447C>T	c.(445-447)TCC>TCT	p.S149S	uc001pwo.2_Intron|uc001pwp.1_Intron|THY1_uc001pwr.2_Silent_p.S149S|THY1_uc001pws.2_RNA	NM_006288	NP_006279	P04216	THY1_HUMAN	Thy-1 cell surface antigen preproprotein	149					angiogenesis|cell-cell adhesion|cytoskeleton organization|focal adhesion assembly|negative regulation of axonogenesis|negative regulation of cell migration|negative regulation of protein kinase activity|negative regulation of T cell receptor signaling pathway|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of T cell activation|retinal cone cell development|T cell receptor signaling pathway	endoplasmic reticulum|growth cone|integral to plasma membrane|membrane raft	GPI anchor binding|integrin binding|Rho GTPase activator activity				0		Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.83e-05)		GGAGGGAGAGGGAGAGCAGGA	0.602000													64	93					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121414344	121414344	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:121414344G>A	uc001pxx.2	+	13	1853	c.1773G>A	c.(1771-1773)GGG>GGA	p.G591G		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	591	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CAGAACCTGGGGAGAAGAGCA	0.507000													83	103					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121430231	121430231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:121430231G>A	uc001pxx.2	+	21	2994	c.2914G>A	c.(2914-2916)GAA>AAA	p.E972K		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	972	Extracellular (Potential).|LDL-receptor class B 5.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		TTTTTAGAATGAAATCTACTG	0.468000													30	30					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121458807	121458807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:121458807G>A	uc001pxx.2	+	28	3973	c.3893G>A	c.(3892-3894)GGA>GAA	p.G1298E	SORL1_uc010rzp.1_Missense_Mutation_p.G144E|SORL1_uc010rzq.1_5'Flank	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1298	Extracellular (Potential).|LDL-receptor class A 6.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GTCTGTGACGGAATCATCCAG	0.572000													34	111					0	0	1	0	0
ASAM	79827	broad.mit.edu	37	11	122968515	122968515	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:122968515C>T	uc001pyt.2	-	2	533	c.174G>A	c.(172-174)GGG>GGA	p.G58G		NM_024769	NP_079045	Q9H6B4	CLMP_HUMAN	adipocyte-specific adhesion molecule precursor	58	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane|tight junction					0		Breast(109;0.0025)|Lung NSC(97;0.0179)|all_lung(97;0.0182)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.73e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0446)		CTTTTTGGTTCCCTTCATTAT	0.493000													59	79					0	0	1	0	0
OR8D4	338662	broad.mit.edu	37	11	123777424	123777424	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:123777424G>A	uc010saa.1	+	1	286	c.286G>A	c.(286-288)GGA>AGA	p.G96R		NM_001005197	NP_001005197	Q8NGM9	OR8D4_HUMAN	olfactory receptor, family 8, subfamily D,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.93e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0409)		CTCCTATTCTGGATGCATGAT	0.428000													99	121					0	0	1	0	0
OR4D5	219875	broad.mit.edu	37	11	123810973	123810973	+	Missense_Mutation	SNP	C	T	T	rs138187932		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:123810973C>T	uc001pzk.1	+	1	650	c.650C>T	c.(649-651)TCG>TTG	p.S217L		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CTTCTGGGATCGTACACAGCA	0.517000													121	184					0	0	1	0	0
OR10G8	219869	broad.mit.edu	37	11	123900343	123900343	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:123900343G>C	uc001pzp.1	+	1	14	c.14G>C	c.(13-15)AGC>ACC	p.S5T		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	5	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TCCAACGCCAGCCTACTGACA	0.527000													5	208					0	0	1	0	0
OR10G8	219869	broad.mit.edu	37	11	123900458	123900458	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:123900458C>G	uc001pzp.1	+	1	129	c.129C>G	c.(127-129)ATC>ATG	p.I43M		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		ACCTCCTCATCCTGCTGGTGA	0.572000													7	204					0	0	1	0	0
OR8G2	26492	broad.mit.edu	37	11	124095748	124095748	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:124095748C>T	uc010saf.1	+	1	351	c.351C>T	c.(349-351)TTC>TTT	p.F117F		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	117						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		TTTACTTCTTCCTCATTTTTG	0.453000													90	116					0	0	1	0	0
EI24	9538	broad.mit.edu	37	11	125448076	125448076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:125448076C>T	uc001qca.2	+	6	606	c.364C>T	c.(364-366)CTC>TTC	p.L122F	EI24_uc001qcb.2_Missense_Mutation_p.L122F|EI24_uc010sbd.1_RNA|EI24_uc009zbl.2_Missense_Mutation_p.L122F|EI24_uc001qcc.2_RNA|EI24_uc010sbe.1_Missense_Mutation_p.L108F|EI24_uc010sbf.1_RNA	NM_004879	NP_004870	O14681	EI24_HUMAN	etoposide induced 2.4 isoform 1	122	Helical; (Potential).				apoptosis|autophagy|induction of apoptosis|negative regulation of cell growth	endoplasmic reticulum membrane|integral to membrane|nuclear membrane				ovary(1)	1	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.64e-07)|OV - Ovarian serous cystadenocarcinoma(99;0.0975)		GGAATTCTTCCTCACGTCAAT	0.458000													80	87					0	0	1	0	0
FOXRED1	55572	broad.mit.edu	37	11	126147010	126147010	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:126147010C>T	uc001qdi.2	+	10	1193	c.1146C>T	c.(1144-1146)TTC>TTT	p.F382F	FOXRED1_uc010sbn.1_Silent_p.F212F|FOXRED1_uc010sbo.1_RNA|FOXRED1_uc010sbp.1_Silent_p.F195F|FOXRED1_uc010sbq.1_Silent_p.F249F|FOXRED1_uc001qdj.2_Silent_p.F171F|FOXRED1_uc010sbr.1_Silent_p.F368F|FOXRED1_uc001qdk.2_Silent_p.F171F	NM_017547	NP_060017	Q96CU9	FXRD1_HUMAN	FAD-dependent oxidoreductase domain containing	382						integral to membrane|mitochondrion	oxidoreductase activity|protein binding				0	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0739)|all_lung(97;0.0798)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0729)		ACCATGATTTCTTCCAGGACA	0.542000													100	109					0	0	1	0	0
ST14	6768	broad.mit.edu	37	11	130079376	130079376	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:130079376T>C	uc001qfw.2	+	18	2502	c.2309T>C	c.(2308-2310)GTC>GCC	p.V770A		NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	770	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	GAGATCCGCGTCATCAACCAG	0.662000													3	17					0	0	1	0	0
ZBTB44	29068	broad.mit.edu	37	11	130106988	130106988	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:130106988C>T	uc001qga.2	-	5	1662	c.1268G>A	c.(1267-1269)GGA>GAA	p.G423E	ZBTB44_uc001qgb.3_Missense_Mutation_p.G423E|ZBTB44_uc001qfx.2_RNA|ZBTB44_uc001qfz.2_Missense_Mutation_p.G423E	NM_014155	NP_054874	Q8NCP5	ZBT44_HUMAN	zinc finger and BTB domain containing 44	423					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0192)|Lung(977;0.235)		TGGTTTAATTCCTGTAAATAA	0.363000													40	55					0	0	1	0	0
SNX19	399979	broad.mit.edu	37	11	130784896	130784896	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:130784896G>A	uc001qgk.3	-	1	1487	c.939C>T	c.(937-939)TTC>TTT	p.F313F	SNX19_uc010sce.1_Intron|SNX19_uc010scf.1_Intron|SNX19_uc010scg.1_Intron|SNX19_uc001qgl.3_Silent_p.F313F|SNX19_uc009zcx.1_Intron	NM_014758	NP_055573	Q92543	SNX19_HUMAN	sorting nexin 19	313					cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|lung(2)	4	all_hematologic(175;0.0597)	Lung NSC(97;0.000272)|all_lung(97;0.000608)|Breast(109;0.000962)|all_neural(223;0.0298)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;0.0195)|Lung(977;0.233)		TGTAACTTAGGAATACTGGGG	0.557000													60	96					0	0	1	0	0
IGSF9B	22997	broad.mit.edu	37	11	133790485	133790485	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:133790485G>A	uc001qgx.3	-	18	3366	c.3135C>T	c.(3133-3135)TTC>TTT	p.F1045F		NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	1045	Pro-rich.|Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		CCCCGAAGGGGAATTCTGGCC	0.662000													91	106					0	0	1	0	0
SLC6A13	6540	broad.mit.edu	37	12	335560	335560	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:335560C>T	uc001qic.1	-	9	1109	c.1056G>A	c.(1054-1056)GAG>GAA	p.E352E	SLC6A13_uc009zdj.1_Silent_p.E342E|SLC6A13_uc010sdl.1_Silent_p.E260E	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	352					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			ACTCACCTGACTCGGCCACCT	0.587000													21	128					0	0	1	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1995503	1995503	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:1995503C>T	uc001qjp.2	-	8	1110	c.879G>A	c.(877-879)GTG>GTA	p.V293V	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Intron	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	293	VWFA.|Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		CCACCAAAATCACTATGTCCT	0.507000													48	54					0	0	1	0	0
PLEKHG6	55200	broad.mit.edu	37	12	6424307	6424307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:6424307C>T	uc001qnr.2	+	4	579	c.431C>T	c.(430-432)TCC>TTC	p.S144F	PLEKHG6_uc001qns.2_Missense_Mutation_p.S144F|PLEKHG6_uc010sew.1_Missense_Mutation_p.S144F|PLEKHG6_uc010sex.1_Missense_Mutation_p.S112F	NM_018173	NP_060643	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain-containing family G	144					regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|skin(1)	2						ATCGAGAAGTCCTGGAGGGAG	0.607000													41	48					0	0	1	0	0
CLSTN3	9746	broad.mit.edu	37	12	7295772	7295773	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:7295772_7295773CC>TT	uc001qsr.2	+	12	1990_1991	c.1712_1713CC>TT	c.(1711-1713)CCC>CTT	p.P571L	CLSTN3_uc001qss.2_Missense_Mutation_p.P583L	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	571	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						CACGTGAACCCCTCACAGTCCC	0.619000													103	145					0	0	1	0	0
CD163L1	283316	broad.mit.edu	37	12	7528012	7528012	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:7528012C>T	uc001qsy.2	-	11	2892	c.2866G>A	c.(2866-2868)GGA>AGA	p.G956R	CD163L1_uc010sge.1_Missense_Mutation_p.G966R	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	956	SRCR 9.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CTTCTTTCTCCAATATATTTT	0.498000													30	36					0	0	1	0	0
CLEC4C	170482	broad.mit.edu	37	12	7894035	7894035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:7894035C>T	uc001qtg.1	-	3	391	c.217G>A	c.(217-219)GAA>AAA	p.E73K	CLEC4C_uc001qth.1_Missense_Mutation_p.E73K|CLEC4C_uc001qti.1_Missense_Mutation_p.E42K	NM_130441	NP_569708	Q8WTT0	CLC4C_HUMAN	C-type lectin domain family 4, member C isoform	73	Extracellular (Potential).				innate immune response	integral to membrane	sugar binding			ovary(2)|skin(1)	3				Kidney(36;0.0915)		TCCTTTCCTTCCATGACGCAG	0.388000													85	108					0	0	1	0	0
PHC1	1911	broad.mit.edu	37	12	9075271	9075271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:9075271C>T	uc001qvd.2	+	6	655	c.499C>T	c.(499-501)CGG>TGG	p.R167W	PHC1_uc001qvc.1_Missense_Mutation_p.R122W|PHC1_uc010sgn.1_Missense_Mutation_p.R167W|PHC1_uc001qve.2_Missense_Mutation_p.R167W	NM_004426	NP_004417	P78364	PHC1_HUMAN	polyhomeotic 1-like	167				LGR -> PGS (in Ref. 1; AAC51169).	multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						AACCCTGGGTCGGAATGTGCC	0.433000													4	12					0	0	1	0	0
A2M	2	broad.mit.edu	37	12	9220803	9220803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:9220803C>T	uc001qvk.1	-	35	4497	c.4384G>A	c.(4384-4386)GAG>AAG	p.E1462K	A2M_uc001qvj.1_Missense_Mutation_p.E504K|A2M_uc009zgk.1_Missense_Mutation_p.E1312K	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	1462					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	GCATTGTACTCAGCAATTGCA	0.423000													25	33					0	0	1	0	0
TAS2R42	353164	broad.mit.edu	37	12	11339441	11339441	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:11339441C>T	uc001qzr.1	-	1	103	c.103G>A	c.(103-105)GGG>AGG	p.G35R	PRB4_uc001qzf.1_Intron	NM_181429	NP_852094	Q7RTR8	T2R42_HUMAN	taste receptor, type 2, member 42	35	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.0455)			TTCTTGATCCCTTCAGAGCAG	0.438000													62	100					0	0	1	0	0
LRP6	4040	broad.mit.edu	37	12	12317381	12317381	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:12317381G>A	uc001rah.3	-	9	2020	c.1878C>T	c.(1876-1878)ACC>ACT	p.T626T	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Silent_p.T626T	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	626	EGF-like 2.|Extracellular (Potential).				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				GGACAATGCAGGTCTTCATGT	0.468000													68	78					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14839148	14839148	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:14839148C>T	uc001rcd.2	-	3	479	c.342G>A	c.(340-342)CGG>CGA	p.R114R	GUCY2C_uc009zhz.2_Silent_p.R114R	NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	114	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						CACAGCCCATCCGTTGTGCAT	0.438000													19	33					0	0	1	0	0
DERA	51071	broad.mit.edu	37	12	16111229	16111229	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:16111229C>T	uc001rde.2	+	3	369	c.237C>T	c.(235-237)ATC>ATT	p.I79I	DERA_uc010shx.1_5'UTR	NM_015954	NP_057038	Q9Y315	DEOC_HUMAN	deoxyribose-phosphate aldolase-like	79					deoxyribonucleoside catabolic process|deoxyribonucleotide catabolic process	cytoplasm	deoxyribose-phosphate aldolase activity|protein binding				0		Hepatocellular(102;0.121)				AATACCCAATCCGGGAAGATC	0.358000													11	7					0	0	1	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18644410	18644410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:18644410G>A	uc001rdt.2	+	19	2704	c.2588G>A	c.(2587-2589)AGA>AAA	p.R863K	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.R904K|PIK3C2G_uc010sic.1_Missense_Mutation_p.R682K	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	863					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				GAAATTGGCAGACTAGAAGAG	0.333000													38	56					0	0	1	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21168679	21168679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:21168679C>T	uc010sin.1	+	1	50	c.50C>T	c.(49-51)TCT>TTT	p.S17F	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Intron	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	17						membrane	transporter activity				0						ATATCCTCTTCTCTTGTTGGT	0.303000													12	8					0	0	1	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21172247	21172247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:21172247G>A	uc010sin.1	+	2	151	c.151G>A	c.(151-153)GGA>AGA	p.G51R	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Intron	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	51						membrane	transporter activity				0						GAAGTTAATTGGAATTGGTTG	0.328000													26	44					0	0	1	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21453400	21453400	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:21453400G>A	uc001rer.2	-	7	1043	c.792C>T	c.(790-792)TTC>TTT	p.F264F	SLCO1A2_uc001res.2_Silent_p.F264F|SLCO1A2_uc010siq.1_Silent_p.F132F|SLCO1A2_uc010sio.1_Silent_p.F132F|SLCO1A2_uc010sip.1_Silent_p.F132F|SLCO1A2_uc001ret.2_Silent_p.F262F|SLCO1A2_uc001reu.2_Silent_p.F244F	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	264	Helical; Name=6; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TGGGCAAAAAGAAAAAAGGAA	0.413000													8	15					0	0	1	0	0
GYS2	2998	broad.mit.edu	37	12	21715933	21715933	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:21715933G>A	uc001rfb.2	-	7	1236	c.981C>T	c.(979-981)TTC>TTT	p.F327F		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	327					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						TCCCAGCAATGAAAAGGAACA	0.368000													29	47					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	21954063	21954063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:21954063C>T	uc001rfh.2	-	38	4585	c.4565G>A	c.(4564-4566)GGA>GAA	p.G1522E	ABCC9_uc001rfg.2_Missense_Mutation_p.G51E	NM_020297	NP_064693	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1522	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TAAAATATTTCCTCGCTTCAT	0.408000													28	44					0	0	1	0	0
TM7SF3	51768	broad.mit.edu	37	12	27143381	27143381	+	Splice_Site	SNP	A	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:27143381A>C	uc010sjl.1	-	6	1106	c.868_splice	c.e6+1	p.G290_splice		NM_016551	NP_057635	Q9NS93	TM7S3_HUMAN	transmembrane 7 superfamily member 3 precursor							integral to membrane|plasma membrane				upper_aerodigestive_tract(2)	2	Colorectal(261;0.0847)					CCACATACTCACCTAGGGAAG	0.368000													27	102					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	33031129	33031129	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:33031129T>A	uc001rlj.3	-	3	800	c.685A>T	c.(685-687)ACC>TCC	p.T229S	PKP2_uc001rlk.3_Missense_Mutation_p.T229S|PKP2_uc010skj.1_Missense_Mutation_p.T229S	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	229					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TCAAAAACGGTGTCGCTAACA	0.602000													29	82					0	0	1	0	0
C12orf40	283461	broad.mit.edu	37	12	40114658	40114658	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:40114658G>A	uc001rmc.2	+	13	1731	c.1564G>A	c.(1564-1566)GAA>AAA	p.E522K	C12orf40_uc009zjv.1_Intron	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	522										ovary(6)	6						CAAAACCAAGGAAAAAATGAA	0.294000													21	6					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49447822	49447822	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:49447822G>A	uc001rta.3	-	5	612	c.612C>T	c.(610-612)TTC>TTT	p.F204F		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	204					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TCATGGATAGGAAGGAACCGC	0.582000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			36	4					0	0	1	0	0
OR6C2	341416	broad.mit.edu	37	12	55846284	55846284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:55846284C>T	uc001sgz.1	+	1	287	c.287C>T	c.(286-288)GCC>GTC	p.A96V		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						AATGCTTGTGCCAGTCAAATA	0.388000													60	15					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57589163	57589163	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:57589163G>A	uc001snd.2	+	52	8884	c.8418G>A	c.(8416-8418)GAG>GAA	p.E2806E		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2806	LDL-receptor class A 17.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GTGCAGACGAGAGCATCGCAG	0.547000													214	44					0	0	1	0	0
SLC26A10	65012	broad.mit.edu	37	12	58018666	58018666	+	Silent	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:58018666G>C	uc001spe.2	+	10	1556	c.1245G>C	c.(1243-1245)GGG>GGC	p.G415G	SLC26A10_uc001spf.2_RNA|SLC26A10_uc009zpz.1_RNA	NM_133489	NP_597996	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	415	STAS.					integral to membrane	antiporter activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					AGGTCCCGGGGCTCTGCATCC	0.582000													96	18					0	0	1	0	0
LRIG3	121227	broad.mit.edu	37	12	59308075	59308076	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:59308075_59308076GG>AA	uc001sqr.2	-	2	524_525	c.278_279CC>TT	c.(277-279)TCC>TTT	p.S93F	LRIG3_uc009zqh.2_Missense_Mutation_p.S33F|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	93	LRR 1.					integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			GGTGGCTCATGGAACTTGCCTT	0.327000													76	21					0	0	1	0	0
HELB	92797	broad.mit.edu	37	12	66725339	66725339	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:66725339G>T	uc001sti.2	+	12	3104	c.3076G>T	c.(3076-3078)GAT>TAT	p.D1026Y	HELB_uc010ssz.1_RNA|HELB_uc009zqt.1_RNA	NM_033647	NP_387467	Q8NG08	HELB_HUMAN	helicase (DNA) B	1026					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		TGATGGAGTAGATACAGATGA	0.438000													68	64					1.15062e-32	1.17597e-32	1	1	0
CAND1	55832	broad.mit.edu	37	12	67699601	67699601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:67699601C>T	uc001stn.2	+	10	2590	c.2153C>T	c.(2152-2154)ACT>ATT	p.T718I	CAND1_uc001sto.2_Missense_Mutation_p.T228I	NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	718	HEAT 16.				cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		TTTCTTACCACTTTGGCAAAA	0.433000													57	436					0	0	1	0	0
KCNMB4	27345	broad.mit.edu	37	12	70760624	70760624	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:70760624T>A	uc001svx.2	+	1	563	c.110T>A	c.(109-111)TTC>TAC	p.F37Y		NM_014505	NP_055320	Q86W47	KCMB4_HUMAN	calcium-activated potassium channel beta 4	37	Helical; Name=1; (Potential).				detection of calcium ion|platelet activation|regulation of action potential in neuron|regulation of neurotransmitter secretion|regulation of vasoconstriction|synaptic transmission	voltage-gated potassium channel complex	calcium-activated potassium channel activity|protein binding				0	Renal(347;0.236)		Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00243)|STAD - Stomach adenocarcinoma(21;0.0118)			ATCTTCGGCTTCTGCTGGCTG	0.612000													41	406					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	71029589	71029589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:71029589C>T	uc001swc.3	-	2	357	c.313G>A	c.(313-315)GAA>AAA	p.E105K	PTPRB_uc001swa.3_Missense_Mutation_p.E105K|PTPRB_uc001swd.3_Missense_Mutation_p.E104K|PTPRB_uc009zrr.1_Intron|PTPRB_uc001swe.2_Missense_Mutation_p.E105K	NM_001109754	NP_001103224	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	Error:Variant_position_missing_in_P23467_after_alignment					angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GAGGCATTTTCCACCTCAAGG	0.537000													6	106					0	0	1	0	0
TSPAN8	7103	broad.mit.edu	37	12	71533542	71533542	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:71533542G>A	uc009zrt.1	-	3	372	c.210C>T	c.(208-210)GGC>GGT	p.G70G	TSPAN8_uc001swk.1_Silent_p.G70G|TSPAN8_uc001swj.1_Silent_p.G70G	NM_004616	NP_004607	P19075	TSN8_HUMAN	transmembrane 4 superfamily member 3	70	Helical; (Potential).				protein glycosylation	integral to membrane|lysosome	signal transducer activity			skin(2)|lung(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(43;0.24)|OV - Ovarian serous cystadenocarcinoma(12;0.244)			ATCCCAGGAAGCCCAGAATCA	0.458000													502	73					0	0	1	0	0
ZFC3H1	196441	broad.mit.edu	37	12	72030778	72030778	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:72030778G>A	uc001swo.2	-	8	2146	c.1787C>T	c.(1786-1788)CCT>CTT	p.P596L		NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	596	Pro-rich.				RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						TGGTAGAGGAGGTAGAGGTTC	0.438000													55	607					0	0	1	0	0
RAB21	23011	broad.mit.edu	37	12	72148967	72148967	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:72148967T>G	uc001swt.2	+	1	310	c.58T>G	c.(58-60)TTC>GTC	p.F20V		NM_014999	NP_055814	Q9UL25	RAB21_HUMAN	RAB21, member RAS oncogene family	20					protein transport|small GTPase mediated signal transduction	cleavage furrow|cytoplasmic vesicle membrane|early endosome membrane|endoplasmic reticulum membrane|Golgi membrane	GDP binding|GTP binding|GTPase activity|protein binding				0						AGCCTACTCGTTCAAGGTGGT	0.532000													4	152					0	0	1	0	0
NAV3	89795	broad.mit.edu	37	12	78415601	78415601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:78415601C>T	uc001syp.2	+	9	2155	c.1982C>T	c.(1981-1983)TCA>TTA	p.S661L	NAV3_uc001syo.2_Missense_Mutation_p.S661L	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	661						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						ATGGACTTATCATATAGTAAG	0.423000										HNSCC(70;0.22)			40	12					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97098520	97098520	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:97098520G>A	uc001tet.1	+	14	1828	c.1750_splice	c.e14-1	p.I584_splice		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467											skin(6)|ovary(1)	7						TATTTTGACAGATCTTTCAAT	0.239000													13	3					0	0	1	0	0
SPIC	121599	broad.mit.edu	37	12	101880137	101880137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:101880137G>A	uc001tid.2	+	6	494	c.335G>A	c.(334-336)CGA>CAA	p.R112Q	SPIC_uc009zua.2_5'UTR|SPIC_uc010svp.1_Missense_Mutation_p.R111Q	NM_152323	NP_689536	Q8N5J4	SPIC_HUMAN	Spi-C transcription factor (Spi-1/PU.1 related)	112	ETS.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						AAGAAGCTCCGACTGTTTGAA	0.428000													78	18					0	0	1	0	0
HCFC2	29915	broad.mit.edu	37	12	104461797	104461797	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:104461797G>T	uc001tkj.3	+	3	488	c.385G>T	c.(385-387)GGA>TGA	p.G129*	HCFC2_uc009zul.2_RNA	NM_013320	NP_037452	Q9Y5Z7	HCFC2_HUMAN	host cell factor C2	129	Kelch 2.				regulation of transcription from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleus	transcription coactivator activity			ovary(2)|central_nervous_system(1)	3						TCCTCGGCTTGGACATAGCTT	0.423000													39	125					7.40236e-40	7.59586e-40	1	1	0
TXNRD1	7296	broad.mit.edu	37	12	104682758	104682758	+	Silent	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:104682758C>G	uc010swk.1	+	4	376	c.354C>G	c.(352-354)ACC>ACG	p.T118T	TXNRD1_uc010swl.1_5'UTR|TXNRD1_uc010swm.1_Silent_p.T20T|TXNRD1_uc010swn.1_Intron|TXNRD1_uc010swo.1_Intron|TXNRD1_uc010swp.1_5'UTR|TXNRD1_uc010swq.1_Silent_p.T18T|TXNRD1_uc001tku.2_RNA|TXNRD1_uc001tko.1_RNA|TXNRD1_uc001tkp.1_Intron|TXNRD1_uc001tkv.1_5'Flank	NM_001093771	NP_001087240	Q16881	TRXR1_HUMAN	thioredoxin reductase 1 isoform 3	118	Glutaredoxin.				cell redox homeostasis|cellular lipid metabolic process|electron transport chain|nucleobase, nucleoside and nucleotide interconversion|signal transduction|transport	cytosol|nucleolus	electron carrier activity|flavin adenine dinucleotide binding|NADP binding|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity				0						CCGCGGAAACCGATCTGCCCG	0.552000													61	134					0	0	1	0	0
CORO1C	23603	broad.mit.edu	37	12	109042520	109042520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:109042520G>A	uc001tnj.2	-	10	1262	c.1166C>T	c.(1165-1167)TCC>TTC	p.S389F	CORO1C_uc009zva.2_Missense_Mutation_p.S442F|CORO1C_uc010sxf.1_Missense_Mutation_p.S352F	NM_014325	NP_055140	Q9ULV4	COR1C_HUMAN	coronin, actin binding protein, 1C isoform 1	389					actin cytoskeleton organization|phagocytosis|signal transduction	actin cytoskeleton	actin filament binding			skin(3)	3						GTGCTTCAAGGAGATGAGGAT	0.527000													33	4					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120580490	120580490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:120580490G>A	uc001txo.2	-	44	5663	c.5650C>T	c.(5650-5652)CGG>TGG	p.R1884W		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1884					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GCCAACACCCGGTTCCGCCGC	0.622000													55	48					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120602263	120602263	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:120602263G>A	uc001txo.2	-	18	1738	c.1725C>T	c.(1723-1725)AGC>AGT	p.S575S		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	575					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GCCAGGTGCGGCTCAGGAGCA	0.642000													93	57					0	0	1	0	0
OASL	8638	broad.mit.edu	37	12	121471315	121471316	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:121471315_121471316CC>TT	uc001tzj.1	-	2	435_436	c.429_430GG>AA	c.(427-432)AGGGGG>AGAAGG	p.G144R	OASL_uc001tzk.1_Missense_Mutation_p.G144R	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	144					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TCCGCAGTCCCCCTGGTCTGGA	0.624000													18	83					0	0	1	0	0
WDR66	144406	broad.mit.edu	37	12	122439497	122439497	+	Silent	SNP	C	T	T	rs138943666	by1000genomes	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:122439497C>T	uc009zxk.2	+	21	3472	c.3330C>T	c.(3328-3330)TCC>TCT	p.S1110S		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	1110							calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		CAACCTGCTCCGTCAAAGGTA	0.507000													82	64					0	0	1	0	0
KNTC1	9735	broad.mit.edu	37	12	123055670	123055670	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:123055670C>T	uc001ucv.2	+	24	2179	c.2016C>T	c.(2014-2016)TCC>TCT	p.S672S	KNTC1_uc010taf.1_Silent_p.S635S	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	672					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		ATTGGATTTCCTTGGTATGAT	0.378000													9	43					0	0	1	0	0
DHX37	57647	broad.mit.edu	37	12	125460023	125460023	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:125460023G>A	uc001ugy.2	-	6	1021	c.922C>T	c.(922-924)CGA>TGA	p.R308*		NM_032656	NP_116045	Q8IY37	DHX37_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 37	308	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;8.05e-05)|Epithelial(86;0.000486)|all cancers(50;0.00653)		GCGGCCACTCGGCGGGGCTCC	0.632000													64	142					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834809	125834809	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:125834809G>A	uc001uhe.1	+	2	872	c.864G>A	c.(862-864)CTG>CTA	p.L288L		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	288	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		CGGTACCTCTGAATCTAGTCC	0.547000													247	163					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138423	126138423	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:126138423G>A	uc001uhe.1	+	9	2412	c.2404G>A	c.(2404-2406)GAT>AAT	p.D802N	TMEM132B_uc001uhf.1_Missense_Mutation_p.D314N	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	802	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		AGGCAGCAATGATATTGAGGG	0.473000													40	27					0	0	1	0	0
RIMBP2	23504	broad.mit.edu	37	12	130921760	130921760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:130921760C>T	uc001uil.2	-	10	1846	c.1682G>A	c.(1681-1683)GGC>GAC	p.G561D	RIMBP2_uc001uim.2_Missense_Mutation_p.G469D|RIMBP2_uc001uin.1_Missense_Mutation_p.G220D	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	561	Fibronectin type-III 3.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		CACGGTCACGCCCTTGGCCTC	0.687000													11	2					0	0	1	0	0
RIMBP2	23504	broad.mit.edu	37	12	130927093	130927093	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:130927093G>A	uc001uil.2	-	8	917	c.753C>T	c.(751-753)TTC>TTT	p.F251F	RIMBP2_uc001uim.2_Silent_p.F159F|RIMBP2_uc001uin.1_5'UTR	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	251						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		AATGGTTGATGAAGTTCTGAT	0.607000													58	134					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19412487	19412487	+	RNA	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:19412487G>A	uc010tcj.1	-	1		c.33623C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TTCTACTTCGGAAATATCAGA	0.343000													11	19					0	0	1	0	0
GJB6	10804	broad.mit.edu	37	13	20797110	20797110	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:20797110C>T	uc001umz.3	-	3	1063	c.510G>A	c.(508-510)GGG>GGA	p.G170G	GJB6_uc001unc.3_Silent_p.G170G|GJB6_uc001una.3_Silent_p.G170G|GJB6_uc001und.3_Silent_p.G170G|GJB6_uc001unb.3_Silent_p.G170G	NM_006783	NP_006774	O95452	CXB6_HUMAN	gap junction protein, beta 6	170	Extracellular (Potential).				cell communication|sensory perception of sound	connexon complex|integral to membrane|intracellular membrane-bounded organelle				ovary(1)	1		all_cancers(29;2.04e-22)|all_epithelial(30;1.19e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;2.17e-05)|Epithelial(112;0.00075)|OV - Ovarian serous cystadenocarcinoma(117;0.00978)|Lung(94;0.0238)|GBM - Glioblastoma multiforme(144;0.0323)|LUSC - Lung squamous cell carcinoma(192;0.0744)		AGGGGTCAATCCCACATTTCA	0.443000													33	58					0	0	1	0	0
RNF17	56163	broad.mit.edu	37	13	25442804	25442804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:25442804C>T	uc001upr.2	+	31	4269	c.4228C>T	c.(4228-4230)CCA>TCA	p.P1410S	RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.P1406S|RNF17_uc001ups.2_Missense_Mutation_p.P1349S|RNF17_uc010aac.2_Missense_Mutation_p.P602S|RNF17_uc010aad.2_Missense_Mutation_p.P420S	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1410					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TCTGCCTTCCCCAGGAGAACT	0.373000													80	118					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	28893659	28893659	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:28893659G>A	uc001usb.3	-	24	3472	c.3187C>T	c.(3187-3189)CTG>TTG	p.L1063L	FLT1_uc010aap.2_Silent_p.L68L|FLT1_uc010aaq.2_Silent_p.L188L|FLT1_uc001usa.3_Silent_p.L281L	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	1063	Cytoplasmic (Potential).|Protein kinase.				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	ATCCATTTCAGAGGAAGTCGA	0.493000													20	26					0	0	1	0	0
B3GALTL	145173	broad.mit.edu	37	13	31843357	31843357	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:31843357C>T	uc010aaz.2	+	8	713	c.603C>T	c.(601-603)ACC>ACT	p.T201T	B3GALTL_uc001utn.3_RNA	NM_194318	NP_919299	Q6Y288	B3GLT_HUMAN	beta 1,3-galactosyltransferase-like	201	Lumenal (Potential).				fucose metabolic process	endoplasmic reticulum membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2		Lung SC(185;0.0257)		all cancers(112;0.00436)|Epithelial(112;0.0285)|OV - Ovarian serous cystadenocarcinoma(117;0.0512)|GBM - Glioblastoma multiforme(144;0.184)		CTAGGCTTACCAAGAGACTAA	0.299000													40	42					0	0	1	0	0
RXFP2	122042	broad.mit.edu	37	13	32367099	32367099	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:32367099G>C	uc001utt.2	+	16	1731	c.1660G>C	c.(1660-1662)GTA>CTA	p.V554L	RXFP2_uc010aba.2_Missense_Mutation_p.V513L	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	554	Helical; Name=4; (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		TTTAATAGCTGTAATTCCATT	0.388000													23	41					0	0	1	0	0
BRCA2	675	broad.mit.edu	37	13	32913867	32913867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:32913867C>T	uc001uub.1	+	11	5602	c.5375C>T	c.(5374-5376)TCC>TTC	p.S1792F		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	1792					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		AAAGTAATATCCAATGTAAAA	0.328000			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			29	39					0	0	1	0	0
KL	9365	broad.mit.edu	37	13	33635227	33635227	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:33635227C>T	uc001uus.2	+	4	2019	c.2011C>T	c.(2011-2013)CGA>TGA	p.R671*	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	671	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		AGAGTATGCCCGACTGTGCTT	0.577000													51	71					0	0	1	0	0
TRPC4	7223	broad.mit.edu	37	13	38320463	38320463	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:38320463G>A	uc001uws.2	-	3	743	c.508C>T	c.(508-510)CGA>TGA	p.R170*	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Nonsense_Mutation_p.R170*|TRPC4_uc010tey.1_Nonsense_Mutation_p.R170*|TRPC4_uc010abw.2_Intron|TRPC4_uc010abx.2_Nonsense_Mutation_p.R170*|TRPC4_uc010aby.2_Nonsense_Mutation_p.R170*	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	170	Cytoplasmic (Potential).|ANK 4.|Multimerization domain (By similarity).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		TCGTGGGGTCGAGGCACTGAG	0.473000													56	70					0	0	1	0	0
TRPC4	7223	broad.mit.edu	37	13	38357319	38357319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:38357319G>A	uc001uws.2	-	2	387	c.152C>T	c.(151-153)TCC>TTC	p.S51F	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Missense_Mutation_p.S51F|TRPC4_uc010tey.1_Missense_Mutation_p.S51F|TRPC4_uc010abw.2_Missense_Mutation_p.S51F|TRPC4_uc010abx.2_Missense_Mutation_p.S51F|TRPC4_uc010aby.2_Missense_Mutation_p.S51F	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	51	Cytoplasmic (Potential).|ANK 1.				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		TTCCTCTAGGGATTTCTTGAC	0.249000													56	85					0	0	1	0	0
STOML3	161003	broad.mit.edu	37	13	39550839	39550839	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:39550839A>T	uc001uwx.2	-	2	286	c.148T>A	c.(148-150)TGC>AGC	p.C50S	STOML3_uc010tez.1_Missense_Mutation_p.C41S	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	50	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		ACCTTCAAGCACATCCATATG	0.438000													17	28					0	0	1	0	0
KBTBD7	84078	broad.mit.edu	37	13	41767765	41767765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:41767765C>T	uc001uxw.1	-	1	938	c.629G>A	c.(628-630)CGG>CAG	p.R210Q	uc001uxv.1_Intron	NM_032138	NP_115514	Q8WVZ9	KBTB7_HUMAN	kelch repeat and BTB (POZ) domain containing 7	210							protein binding			ovary(1)	1		Lung NSC(96;0.000105)|Breast(139;0.00715)|Prostate(109;0.0233)|Lung SC(185;0.0367)		all cancers(112;6.21e-09)|Epithelial(112;6.99e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000196)|GBM - Glioblastoma multiforme(144;0.000857)|BRCA - Breast invasive adenocarcinoma(63;0.0669)		AGTCTCCTCCCGAATTGAACC	0.537000													49	232					0	0	1	0	0
TPT1	7178	broad.mit.edu	37	13	45914166	45914166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:45914166C>T	uc001uzy.1	-	3	349	c.256G>A	c.(256-258)GAA>AAA	p.E86K	TPT1_uc001uzz.1_Missense_Mutation_p.E52K|SNORA31_uc001vaa.1_5'Flank|TPT1_uc010tfp.1_3'UTR|LOC100190939_uc010tfr.1_5'Flank|LOC100190939_uc001vac.2_5'Flank	NM_003295	NP_003286	P13693	TCTP_HUMAN	tumor protein, translationally-controlled 1	86					anti-apoptosis|response to virus	extracellular space|multivesicular body	calcium ion binding|protein binding				0		Lung NSC(96;0.00227)|Prostate(109;0.00578)|Breast(56;0.0192)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000232)		TTGTAGGCTTCTTTTGTGAAA	0.433000													46	85					0	0	1	0	0
SPERT	220082	broad.mit.edu	37	13	46287704	46287704	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:46287704C>T	uc001van.1	+	3	624	c.544C>T	c.(544-546)CTG>TTG	p.L182L	SPERT_uc001vao.2_Silent_p.L146L	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	182	Potential.					cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		GAACAAGGCCCTGCGCGAGGA	0.627000													80	98					0	0	1	0	0
CPB2	1361	broad.mit.edu	37	13	46653009	46653009	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:46653009C>T	uc001vaw.2	-	5	479	c.412G>A	c.(412-414)GAG>AAG	p.E138K	uc001vau.1_Intron|uc001vav.1_Intron|CPB2_uc001vax.2_Missense_Mutation_p.E138K	NM_001872	NP_001863	Q96IY4	CBPB2_HUMAN	plasma carboxypeptidase B2 isoform a	138					blood coagulation|fibrinolysis|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(1)|skin(1)	2		Lung NSC(96;4.21e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|all_neural(104;0.235)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;5.44e-05)		GGATGCCTCTCAGTTATAAAT	0.393000													28	48					0	0	1	0	0
HTR2A	3356	broad.mit.edu	37	13	47409284	47409284	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:47409284G>A	uc001vbq.2	-	3	1238	c.1104C>T	c.(1102-1104)ATC>ATT	p.I368I	HTR2A_uc001vbr.2_Silent_p.I268I|HTR2A_uc010acr.2_Silent_p.I368I	NM_000621	NP_000612	P28223	5HT2A_HUMAN	5-hydroxytryptamine receptor 2A isoform 1	368	Helical; Name=7; (By similarity).				ERK1 and ERK2 cascade|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	integral to plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|serotonin binding|serotonin receptor activity			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		all_lung(13;7.2e-10)|Lung NSC(96;3.77e-07)|Breast(56;2.06e-05)|Prostate(109;0.00116)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Myeloproliferative disorder(33;0.0333)		GBM - Glioblastoma multiforme(144;4.67e-05)|COAD - Colon adenocarcinoma(199;0.224)	Aripiprazole(DB01238)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cisapride(DB00604)|Clomipramine(DB01242)|Clozapine(DB00363)|Cyclobenzaprine(DB00924)|Cyproheptadine(DB00434)|Dihydroergotamine(DB00320)|Donepezil(DB00843)|Epinastine(DB00751)|Ergotamine(DB00696)|Fluvoxamine(DB00176)|Mesoridazine(DB00933)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Nefazodone(DB01149)|Olanzapine(DB00334)|Paliperidone(DB01267)|Paroxetine(DB00715)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	AGAGATAACCGATCCAAACAA	0.458000													39	38					0	0	1	0	0
EBPL	84650	broad.mit.edu	37	13	50235286	50235286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:50235286G>A	uc001vdg.2	-	4	502	c.439C>T	c.(439-441)CTC>TTC	p.L147F	EBPL_uc001vdh.2_RNA|EBPL_uc001vdi.2_3'UTR	NM_032565	NP_115954	Q9BY08	EBPL_HUMAN	emopamil binding related protein, delta8-delta7	147					sterol metabolic process	endoplasmic reticulum membrane|integral to membrane	cholestenol delta-isomerase activity				0		Lung NSC(96;0.000468)|Breast(56;0.0011)|Prostate(109;0.00243)|Hepatocellular(98;0.0556)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.06e-09)		CACTCTGGGAGGAAGGTCATC	0.542000													50	81					0	0	1	0	0
HNRNPA1L2	144983	broad.mit.edu	37	13	53217100	53217100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:53217100C>T	uc001vgx.1	+	7	1546	c.473C>T	c.(472-474)TCC>TTC	p.S158F	HNRNPA1L2_uc001vgy.1_Missense_Mutation_p.S158F|HNRNPA1L2_uc001vgz.1_Missense_Mutation_p.S158F	NM_001011724	NP_001011724	Q32P51	RA1L2_HUMAN	heterogeneous nuclear ribonucleoprotein A1-like	158	Globular B domain.|RRM 2.				mRNA processing|mRNA transport|RNA splicing	cytoplasm|spliceosomal complex	nucleotide binding|RNA binding				0						GACCATGACTCCGTGGATAAG	0.433000													40	66					0	0	1	0	0
SLITRK1	114798	broad.mit.edu	37	13	84455278	84455278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:84455278C>T	uc001vlk.2	-	1	1251	c.365G>A	c.(364-366)CGA>CAA	p.R122Q		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	122	Extracellular (Potential).|LRR 3.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		AGTCTGCTTTCGAAAAGACTT	0.468000													69	76					0	0	1	0	0
NALCN	259232	broad.mit.edu	37	13	101742024	101742024	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:101742024T>A	uc001vox.1	-	30	3668	c.3479A>T	c.(3478-3480)AAT>ATT	p.N1160I		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1160	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CTTGTTTTCATTGAAATTAGC	0.388000													12	33					0	0	1	0	0
TPP2	7174	broad.mit.edu	37	13	103309516	103309516	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:103309516T>A	uc001vpi.3	+	24	3166	c.3063T>A	c.(3061-3063)TTT>TTA	p.F1021L		NM_003291	NP_003282	P29144	TPP2_HUMAN	tripeptidyl peptidase II	1021					proteolysis	cytoplasm|nucleus	aminopeptidase activity|serine-type endopeptidase activity|tripeptidyl-peptidase activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AAGAAGAGTTTACTGAAGCAT	0.289000													29	47					0	0	1	0	0
MYO16	23026	broad.mit.edu	37	13	109777484	109777484	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:109777484A>T	uc001vqt.1	+	30	3620	c.3494A>T	c.(3493-3495)CAG>CTG	p.Q1165L	MYO16_uc010agk.1_Missense_Mutation_p.Q1187L|MYO16_uc010tjh.1_Missense_Mutation_p.Q677L	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1165	IQ.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			TTAGCACGCCAGCACCTGCTT	0.403000													7	60					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110864826	110864826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:110864826C>T	uc001vqw.3	-	6	447	c.325G>A	c.(325-327)GGA>AGA	p.G109R	COL4A1_uc010agl.2_Missense_Mutation_p.G109R	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	109					angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CCAGGAATTCCCTGCAATGAA	0.468000													72	230					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111137338	111137338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:111137338G>A	uc001vqx.2	+	33	3278	c.2989G>A	c.(2989-2991)GGG>AGG	p.G997R		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	997	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			AGGAGATGAAGGGCCTATGGG	0.617000													5	42					0	0	1	0	0
ARHGEF7	8874	broad.mit.edu	37	13	111955450	111955450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:111955450C>T	uc010tjo.1	+	20	2208	c.2156C>T	c.(2155-2157)ACC>ATC	p.T719I	ARHGEF7_uc001vrv.3_Missense_Mutation_p.T644I|ARHGEF7_uc001vrw.3_Missense_Mutation_p.T644I|ARHGEF7_uc001vrx.3_Missense_Mutation_p.T644I	NM_003899	NP_003890	Q14155	ARHG7_HUMAN	PAK-interacting exchange factor beta isoform a	Error:Variant_position_missing_in_Q14155_after_alignment					apoptosis|epidermal growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_lung(23;3.96e-05)|Lung NSC(43;0.00156)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.188)			TGGGATGAGACCAATCTATAA	0.512000													10	13					0	0	1	0	0
GRK1	6011	broad.mit.edu	37	13	114322124	114322124	+	Silent	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:114322124C>A	uc010tkf.1	+	1	531	c.423C>A	c.(421-423)ATC>ATA	p.I141I		NM_002929	NP_002920	Q15835	RK_HUMAN	rhodopsin kinase precursor	141	RGS.|N-terminal.				regulation of G-protein coupled receptor protein signaling pathway|rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway	membrane	ATP binding|G-protein coupled receptor kinase activity|rhodopsin kinase activity|signal transducer activity			ovary(2)	2	Lung NSC(43;0.0113)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.00696)|all_epithelial(44;0.00347)|all_lung(25;0.0221)|Breast(118;0.0411)|Lung NSC(25;0.0839)	all cancers(43;0.234)			CTGTGGAGATCCAGGACGGGC	0.627000													8	11					5.16669e-11	5.22125e-11	1	1	0
ZNF828	283489	broad.mit.edu	37	13	115090600	115090600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:115090600C>T	uc010ahb.2	+	3	1612	c.1283C>T	c.(1282-1284)CCA>CTA	p.P428L	ZNF828_uc001vuv.2_Missense_Mutation_p.P428L|ZNF828_uc010tko.1_Missense_Mutation_p.P428L	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	428	Mediates interaction with MAD2L2.|Pro-rich.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		CCACTATCCCCAGAGATCCGT	0.547000													70	77					0	0	1	0	0
ZNF828	283489	broad.mit.edu	37	13	115091157	115091157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:115091157C>T	uc010ahb.2	+	3	2169	c.1840C>T	c.(1840-1842)CCT>TCT	p.P614S	ZNF828_uc001vuv.2_Missense_Mutation_p.P614S|ZNF828_uc010tko.1_Missense_Mutation_p.P614S	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	614	Mediates localization to the chromosome and the spindle and negatively regulates chromosome alignment.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		TACTTTATTTCCTTCCTCAAA	0.358000													75	95					0	0	1	0	0
OR4K1	79544	broad.mit.edu	37	14	20403926	20403926	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:20403926T>A	uc001vwj.1	+	1	101	c.101T>A	c.(100-102)GTC>GAC	p.V34D		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	34	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TTCTCTATAGTCTATGTGACA	0.373000													78	59					0	0	1	0	0
TEP1	7011	broad.mit.edu	37	14	20848605	20848605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:20848605G>A	uc001vxe.2	-	34	4832	c.4792C>T	c.(4792-4794)CTC>TTC	p.L1598F	TEP1_uc010ahk.2_Missense_Mutation_p.L941F|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.L1490F|TEP1_uc010tlh.1_5'UTR	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1598					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GCCTCGGGGAGCTTTTGTTCC	0.572000													48	27					0	0	1	0	0
FLJ10357	55701	broad.mit.edu	37	14	21542540	21542541	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:21542540_21542541TC>GT	uc001vzp.2	+	3	680_681	c.651_652TC>GT	c.(649-654)CTTCCT>CTGTCT	p.P218S	FLJ10357_uc001vzn.1_Missense_Mutation_p.P218S|FLJ10357_uc001vzo.1_Intron|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_5'UTR	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	218					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		GCCCTCCACTTCCTGAGGAGGC	0.614000													15	30					0	0	1	0	0
FLJ10357	55701	broad.mit.edu	37	14	21550456	21550456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:21550456C>T	uc001vzp.2	+	15	3334	c.3305C>T	c.(3304-3306)GCC>GTC	p.A1102V	FLJ10357_uc001vzo.1_Missense_Mutation_p.A181V|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_Missense_Mutation_p.A388V	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	1102	DH.				regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		GATTACGTGGCCACCTTGAGT	0.637000													29	34					0	0	1	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21785991	21785991	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:21785991G>A	uc001wag.2	+	10	1288	c.1288G>A	c.(1288-1290)GAG>AAG	p.E430K	RPGRIP1_uc001wah.2_Missense_Mutation_p.E72K|RPGRIP1_uc001wai.2_Missense_Mutation_p.E72K	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	430	Potential.				response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		AGTTTTACTTGAGCTGTCCAG	0.502000													7	16					0	0	1	0	0
IPO4	79711	broad.mit.edu	37	14	24652236	24652236	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:24652236G>A	uc001wmv.1	-	23	2498	c.2367C>T	c.(2365-2367)CCC>CCT	p.P789P	IPO4_uc001wmt.1_Silent_p.P267P|IPO4_uc001wmu.2_Silent_p.P451P|IPO4_uc001wmx.1_Silent_p.P653P|IPO4_uc001wmy.1_Silent_p.P653P|IPO4_uc010tnz.1_RNA|IPO4_uc001wmw.1_RNA|IPO4_uc001wmz.1_Silent_p.P789P	NM_024658	NP_078934	Q8TEX9	IPO4_HUMAN	importin 4	789					intracellular protein transport	cytoplasm|nucleus	protein binding|protein transporter activity			kidney(1)	1				GBM - Glioblastoma multiforme(265;0.0087)		GGCGCCCAGGGGGCTTCAGTG	0.677000													38	88					0	0	1	0	0
TM9SF1	10548	broad.mit.edu	37	14	24682669	24682669	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:24682669C>A	uc010tob.1	-	1	689	c.55G>T	c.(55-57)GGA>TGA	p.G19*	CHMP4A_uc001wni.2_Nonsense_Mutation_p.G36*|CHMP4A_uc010toc.1_RNA|CHMP4A_uc001wnj.2_Nonsense_Mutation_p.G36*|MDP1_uc001wnk.1_3'UTR|CHMP4A_uc001wnm.1_3'UTR	NM_006405	NP_006396	O15321	TM9S1_HUMAN	transmembrane 9 superfamily member 1 isoform a	Error:Variant_position_missing_in_O15321_after_alignment					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)	1				GBM - Glioblastoma multiforme(265;0.0183)		CTCCCGCCTCCGCCCCTCAGC	0.687000													3	85					1	1	1	1	0
TGM1	7051	broad.mit.edu	37	14	24731320	24731321	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:24731320_24731321GG>AA	uc001wod.2	-	2	362_363	c.238_239CC>TT	c.(238-240)CCT>TTT	p.P80F	TGM1_uc010tog.1_Intron	NM_000359	NP_000350	P22735	TGM1_HUMAN	transglutaminase 1	80	Membrane anchorage region.				cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	CCGGGAGCCAGGTCTTCGAGTG	0.653000													58	95					0	0	1	0	0
CMA1	1215	broad.mit.edu	37	14	24974803	24974803	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:24974803C>T	uc001wpp.1	-	5	693	c.663G>A	c.(661-663)CGG>CGA	p.R221R	CMA1_uc010alx.1_Silent_p.R110R	NM_001836	NP_001827	P23946	CMA1_HUMAN	chymase 1, mast cell preproprotein	221	Peptidase S1.				interleukin-1 beta biosynthetic process|proteolysis	extracellular region	serine-type endopeptidase activity				0				GBM - Glioblastoma multiforme(265;0.0271)		TTGCATCCGACCGTCCATAGG	0.602000													39	33					0	0	1	0	0
CTSG	1511	broad.mit.edu	37	14	25043008	25043008	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:25043008G>A	uc001wpq.2	-	5	640	c.603C>T	c.(601-603)TCC>TCT	p.S201S		NM_001911	NP_001902	P08311	CATG_HUMAN	cathepsin G preproprotein	201	Peptidase S1.	Charge relay system.			immune response|proteolysis	cell surface|extracellular space|plasma membrane|stored secretory granule	heparin binding|serine-type endopeptidase activity			ovary(2)	2				GBM - Glioblastoma multiforme(265;0.0269)		GGGGGCCTCCGGAATCCCCCT	0.607000													25	71					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	36840665	36840665	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:36840665A>C	uc001wtp.2	+	1	296	c.47A>C	c.(46-48)CAA>CCA	p.Q16P		NM_199286	NP_954980			stella																		GGGTCTCCACAAATGCTCACC	0.468000													4	21					0	0	1	0	0
NKX2-1	7080	broad.mit.edu	37	14	36987004	36987004	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:36987004G>A	uc001wtt.2	-	2	936	c.595C>T	c.(595-597)CAC>TAC	p.H199Y	SFTA3_uc001wts.2_Intron|NKX2-1_uc001wtu.2_Missense_Mutation_p.H229Y|NKX2-1_uc001wtv.2_Missense_Mutation_p.H199Y|uc001wtw.1_5'Flank	NM_003317	NP_003308	P43699	NKX21_HUMAN	thyroid transcription factor 1 isoform 2	199	Homeobox.				epithelial tube branching involved in lung morphogenesis|globus pallidus development|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|thyroid gland development		protein binding|transcription regulatory region DNA binding			skin(1)	1	all_cancers(3;4.47e-51)|Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)|Breast(36;0.165)		Lung(8;1.8e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.014)|all cancers(34;0.0366)|LUSC - Lung squamous cell carcinoma(13;0.132)	GBM - Glioblastoma multiforme(112;0.0171)		GGCGTCAGGTGGATCATGCTG	0.527000			A		NSCLC								25	13					0	0	1	0	0
SLC38A6	145389	broad.mit.edu	37	14	61497233	61497233	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:61497233C>T	uc001xfg.1	+	6	590	c.474C>T	c.(472-474)GAC>GAT	p.D158D	SLC38A6_uc001xfh.1_Silent_p.D158D|SLC38A6_uc001xfi.2_RNA|SLC38A6_uc001xfj.1_RNA|SLC38A6_uc001xfk.2_RNA|SLC38A6_uc010trz.1_Silent_p.D135D	NM_153811	NP_722518	Q8IZM9	S38A6_HUMAN	solute carrier family 38, member 6	158					amino acid transport|sodium ion transport	integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(108;0.0981)		TGACTGGAGACTATAGTAGGT	0.308000													11	41					0	0	1	0	0
SYT16	83851	broad.mit.edu	37	14	62567416	62567416	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:62567416G>A	uc001xfu.1	+	6	2126	c.1929G>A	c.(1927-1929)CTG>CTA	p.L643L	SYT16_uc010tse.1_Silent_p.L201L	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	643										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		ACACTTTGCTGGAATCCTAGG	0.517000													12	24					0	0	1	0	0
GPHB5	122876	broad.mit.edu	37	14	63784528	63784528	+	Silent	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:63784528G>T	uc010apu.2	-	1	36	c.36C>A	c.(34-36)GCC>GCA	p.A12A	GPHB5_uc001xgc.2_Silent_p.A2A	NM_145171	NP_660154	Q86YW7	GPHB5_HUMAN	glycoprotein beta 5	12						extracellular region	hormone activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00372)|all cancers(60;0.0226)|BRCA - Breast invasive adenocarcinoma(234;0.0978)		GAAGGAGGAGGGCCATGGGGC	0.582000													39	17					1.23713e-20	1.2585e-20	1	1	0
SPTB	6710	broad.mit.edu	37	14	65253509	65253509	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:65253509C>T	uc001xht.2	-	15	3228	c.3174G>A	c.(3172-3174)GGG>GGA	p.G1058G	SPTB_uc001xhr.2_Silent_p.G1058G|SPTB_uc001xhs.2_Silent_p.G1058G|SPTB_uc001xhu.2_Silent_p.G1058G	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1058	Spectrin 8.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		GGCTGACTTCCCCCAGCAAGT	0.602000													56	45					0	0	1	0	0
SFRS5	6430	broad.mit.edu	37	14	70238062	70238062	+	Missense_Mutation	SNP	G	A	A	rs142745234		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:70238062G>A	uc001xll.2	+	9	2154	c.703G>A	c.(703-705)GTG>ATG	p.V235M	SFRS5_uc001xlm.2_RNA|SFRS5_uc001xlo.2_Missense_Mutation_p.V235M|SFRS5_uc001xlp.2_Missense_Mutation_p.V235M|SFRS5_uc001xlq.2_Missense_Mutation_p.V232M	NM_006925	NP_008856	Q13243	SRSF5_HUMAN	splicing factor, arginine/serine-rich 5	235	Arg/Ser-rich (RS domain).				mRNA 3'-end processing|mRNA export from nucleus|mRNA splice site selection|termination of RNA polymerase II transcription	nuclear speck	nucleotide binding|protein binding|RNA binding				0				all cancers(60;0.00144)|BRCA - Breast invasive adenocarcinoma(234;0.0132)|OV - Ovarian serous cystadenocarcinoma(108;0.0154)		TAGGTCTCCCGTGCCTGAGAA	0.562000													70	161					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634218	70634218	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:70634218C>T	uc001xly.2	-	2	1676	c.922G>A	c.(922-924)GAA>AAA	p.E308K	SLC8A3_uc001xlw.2_Missense_Mutation_p.E308K|SLC8A3_uc001xlx.2_Missense_Mutation_p.E308K|SLC8A3_uc001xlz.2_Missense_Mutation_p.E308K|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	308	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TCATCCACTTCCTTCCCTTCC	0.493000													29	28					0	0	1	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713681	70713681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:70713681C>T	uc010ttg.1	-	1	838	c.187G>A	c.(187-189)GAG>AAG	p.E63K		NR_003951				SubName: Full=ADAM21-like protein;												0						AATACATCCTCTTGCACCTTT	0.388000													52	52					0	0	1	0	0
ADAM21	8747	broad.mit.edu	37	14	70925439	70925439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:70925439G>A	uc001xmd.2	+	1	1223	c.1223G>A	c.(1222-1224)CGC>CAC	p.R408H		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	408	Disintegrin.|Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		ATGCTAAAGCGCTGTGGGAAT	0.458000													25	90					0	0	1	0	0
DCAF4	26094	broad.mit.edu	37	14	73406971	73406971	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:73406971C>T	uc001xng.2	+	4	457	c.237C>T	c.(235-237)TTC>TTT	p.F79F	DCAF4_uc001xnj.2_Silent_p.F79F|DCAF4_uc010ttr.1_Silent_p.F57F|DCAF4_uc001xnh.2_5'UTR|DCAF4_uc010tts.1_Silent_p.F79F|DCAF4_uc010ttt.1_5'UTR|DCAF4_uc001xni.2_Silent_p.F79F|DCAF4_uc001xnk.2_Silent_p.F79F	NM_015604	NP_056419	Q8WV16	DCAF4_HUMAN	DDB1 and CUL4 associated factor 4 isoform 1	79						CUL4 RING ubiquitin ligase complex				ovary(1)|central_nervous_system(1)|skin(1)	3						AACGCTACTTCCGCTTGCTCC	0.483000													101	71					0	0	1	0	0
ACOT6	641372	broad.mit.edu	37	14	74086379	74086379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:74086379C>T	uc001xop.2	+	2	791	c.460C>T	c.(460-462)CCT>TCT	p.P154S		NM_001037162	NP_001032239	Q3I5F7	ACOT6_HUMAN	acyl-CoA thioesterase 6	154						cytosol	carboxylesterase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00331)		ACCTTATTTTCCTCCTTCTAG	0.483000													30	24					0	0	1	0	0
PTGR2	145482	broad.mit.edu	37	14	74345864	74345864	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:74345864C>T	uc001xow.2	+	6	745	c.585C>T	c.(583-585)CTC>CTT	p.L195L	PTGR2_uc010tue.1_Silent_p.L195L|PTGR2_uc001xox.2_Silent_p.L195L|ZNF410_uc001xoy.1_Intron	NM_001146154	NP_001139626	Q8N8N7	PTGR2_HUMAN	prostaglandin reductase 2	195					prostaglandin metabolic process		15-oxoprostaglandin 13-oxidase activity|zinc ion binding				0						AATGCATCCTCTTGACCTCAG	0.413000													87	53					0	0	1	0	0
FAM161B	145483	broad.mit.edu	37	14	74411278	74411278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:74411278G>A	uc001xpd.1	-	3	791	c.685C>T	c.(685-687)CTC>TTC	p.L229F		NM_152445	NP_689658			hypothetical protein LOC145483											ovary(1)	1						TCTTGGTAGAGGGGCAGGTAG	0.617000													33	91					0	0	1	0	0
LTBP2	4053	broad.mit.edu	37	14	75022272	75022272	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:75022272G>C	uc001xqa.2	-	4	1342	c.955C>G	c.(955-957)CCA>GCA	p.P319A		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	319					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		TCAAGGCCTGGTCCCGGGGGC	0.642000													14	206					0	0	1	0	0
NEK9	91754	broad.mit.edu	37	14	75585546	75585546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:75585546G>A	uc001xrl.2	-	5	771	c.617C>T	c.(616-618)TCC>TTC	p.S206F	NEK9_uc001xrk.2_5'Flank	NM_033116	NP_149107	Q8TD19	NEK9_HUMAN	NIMA-related kinase 9	206	Protein kinase.				cell division|mitosis	mitochondrion|nucleus	ATP binding|metal ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(2)|stomach(2)|ovary(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00718)		CTCAGCCATGGAATACTCAGA	0.328000													33	6					0	0	1	0	0
PTPN21	11099	broad.mit.edu	37	14	88934497	88934497	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:88934497C>A	uc001xwv.3	-	19	3840	c.3509G>T	c.(3508-3510)AGC>ATC	p.S1170I	PTPN21_uc010twc.1_Missense_Mutation_p.S966I	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	1170						cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						GAGCCTGGAGCTTTTCAGGAA	0.483000													4	142					1	1	1	1	0
KIAA1409	57578	broad.mit.edu	37	14	93962767	93962767	+	Silent	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:93962767T>C	uc001ybv.1	+	3	275	c.192T>C	c.(190-192)TGT>TGC	p.C64C	KIAA1409_uc001ybs.1_Silent_p.C64C|KIAA1409_uc001ybu.1_Intron	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	241						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TGTATCATTGTCAATTACTGG	0.274000													23	33					0	0	1	0	0
FAM181A	90050	broad.mit.edu	37	14	94395279	94395279	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:94395279C>T	uc001ybz.1	+	3	1141	c.834C>T	c.(832-834)TTC>TTT	p.F278F	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Silent_p.F216F|FAM181A_uc001yca.1_Silent_p.F216F	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	278											0						GCTGCCCCTTCCAGTACCATG	0.642000													30	4					0	0	1	0	0
DDX24	57062	broad.mit.edu	37	14	94527378	94527379	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:94527378_94527379GG>AA	uc001ycj.2	-	4	1376_1377	c.1277_1278CC>TT	c.(1276-1278)TCC>TTT	p.S426F	DDX24_uc010twq.1_Missense_Mutation_p.S383F|DDX24_uc010twr.1_Missense_Mutation_p.S176F	NM_020414	NP_065147	Q9GZR7	DDX24_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	426	Helicase ATP-binding.				RNA metabolic process	cytoplasm|nucleolus|nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|skin(1)	4		all_cancers(154;0.12)		Epithelial(152;0.114)|all cancers(159;0.19)|COAD - Colon adenocarcinoma(157;0.207)		GTTTCTGCGTGGACATTCCACC	0.426000													90	22					0	0	1	0	0
MIR487B	664616	broad.mit.edu	37	14	101512841	101512841	+	RNA	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:101512841G>A	hsa-mir-487b|MI0003530	+			c.50G>A			MIR539_hsa-mir-539|MI0003514_5'Flank|MIR889_hsa-mir-889|MI0005540_5'Flank|MIR544_hsa-mir-544|MI0003515_5'Flank																	0						TGCTCATGTCGAATCGTACAG	0.308000													58	10					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105414446	105414446	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:105414446T>C	uc010axc.1	-	7	7462	c.7342A>G	c.(7342-7344)AGC>GGC	p.S2448G	AHNAK2_uc001ypx.2_Missense_Mutation_p.S2348G	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2448						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			ACCTCCACGCTGGGCTGAGAC	0.632000													12	244					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106512077	106512077	+	RNA	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:106512077G>A	uc010tyt.1	-	1669		c.33435C>T								Parts of antibodies, mostly variable regions.												0						ATCTCACACTGGACACCTGCA	0.493000													36	12					0	0	1	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413869	22413869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:22413869G>A	uc001yuf.2	+	1	168	c.168G>A	c.(166-168)ATG>ATA	p.M56I		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						CAACTGTCATGAACTCTAGAG	0.507000													57	241					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	22440442	22440442	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:22440442C>T	uc001yug.2	-	1	424	c.405G>A	c.(403-405)GAG>GAA	p.E135E						full-length cDNA clone CS0DI014YE21 of Placenta Cot 25-normalized of Homo sapiens (human).																		TGTTCAAAATCTCTTCTTCCT	0.483000													5	17					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	23689122	23689122	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:23689122C>T	uc001ywg.1	-	5	455	c.357G>A	c.(355-357)GGG>GGA	p.G119G	uc010ayh.1_RNA					RecName: Full=Golgin subfamily A member 6-like protein 2;																		TGCCCAGGTTCCCATCTTCAA	0.512000													6	5					0	0	1	0	0
OCA2	4948	broad.mit.edu	37	15	28196959	28196959	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:28196959G>A	uc001zbh.3	-	18	2032	c.1922C>T	c.(1921-1923)TCG>TTG	p.S641L	OCA2_uc010ayv.2_Missense_Mutation_p.S617L	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	641	Extracellular (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding	p.S641W(1)		ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		AGGGACAAACGAATTGAGGAA	0.443000									Oculocutaneous_Albinism				37	57					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28519529	28519529	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:28519529G>A	uc001zbj.2	-	7	814	c.708C>T	c.(706-708)CCC>CCT	p.P236P	HERC2_uc001zbl.1_5'UTR	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	236					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GCGAGGCCTCGGGAAGTGCTC	0.657000													24	31					0	0	1	0	0
TRPM1	4308	broad.mit.edu	37	15	31294703	31294703	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:31294703G>A	uc001zfm.2	-	27	4262	c.4134C>T	c.(4132-4134)TCC>TCT	p.S1378S	TRPM1_uc010azy.2_Silent_p.S1285S|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	1378	Cytoplasmic (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		TTAAACTTGGGGAAATAGTTT	0.348000													46	65					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34129111	34129111	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:34129111C>T	uc001zhi.2	+	88	11643	c.11573C>T	c.(11572-11574)TCC>TTC	p.S3858F	RYR3_uc010bar.2_Missense_Mutation_p.S3853F	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3858					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TTCTAGGATTCCAGTCAGATC	0.507000													10	27					0	0	1	0	0
RASGRP1	10125	broad.mit.edu	37	15	38811551	38811551	+	Silent	SNP	C	T	T	rs143250519	by1000genomes	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:38811551C>T	uc001zke.3	-	4	526	c.348G>A	c.(346-348)AAG>AAA	p.K116K	RASGRP1_uc010bbe.2_RNA|RASGRP1_uc010bbf.2_5'UTR|RASGRP1_uc010bbg.2_5'UTR|RASGRP1_uc001zkd.3_Silent_p.K116K	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	116	N-terminal Ras-GEF.				cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding			large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		CTGGTGAATTCTTTGCCAAAG	0.388000													48	73					0	0	1	0	0
PLCB2	5330	broad.mit.edu	37	15	40589724	40589724	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:40589724G>A	uc001zld.2	-	13	1622	c.1321C>T	c.(1321-1323)CCA>TCA	p.P441S	PLCB2_uc010bbo.2_Missense_Mutation_p.P441S|PLCB2_uc010ucm.1_Missense_Mutation_p.P441S	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	441	PI-PLC X-box.				activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		CCACTCACTGGGAACTTTTCC	0.597000													65	63					0	0	1	0	0
CHP	11261	broad.mit.edu	37	15	41555046	41555047	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:41555046_41555047CC>TT	uc001znl.2	+	4	458_459	c.314_315CC>TT	c.(313-315)CCC>CTT	p.P105L		NM_007236	NP_009167	Q99653	CHP1_HUMAN	calcium binding protein P22	105					potassium ion transport|small GTPase mediated signal transduction		potassium channel regulator activity			ovary(1)	1		all_cancers(109;1.19e-18)|all_epithelial(112;5.87e-16)|Lung NSC(122;8.86e-12)|all_lung(180;2.47e-10)|Melanoma(134;0.0574)|Colorectal(260;0.0946)|Ovarian(310;0.143)		GBM - Glioblastoma multiforme(113;1.68e-06)|LUSC - Lung squamous cell carcinoma(244;0.008)|Lung(196;0.00802)|BRCA - Breast invasive adenocarcinoma(123;0.169)		GTGAATGGACCCGAACCACTCA	0.416000													59	100					0	0	1	0	0
RPAP1	26015	broad.mit.edu	37	15	41820202	41820202	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:41820202G>A	uc001zod.2	-	11	1408	c.1284C>T	c.(1282-1284)GAC>GAT	p.D428D		NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	428						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		CTGCTAGCCGGTCCCCAAACT	0.542000													21	43					0	0	1	0	0
TGM7	116179	broad.mit.edu	37	15	43584211	43584211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:43584211C>T	uc001zrf.1	-	4	529	c.524G>A	c.(523-525)AGA>AAA	p.R175K		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	175					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	GGTGATGAATCTTTCATGACC	0.502000													24	90					0	0	1	0	0
TP53BP1	7158	broad.mit.edu	37	15	43769853	43769853	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:43769853T>A	uc001zrs.2	-	8	1026	c.878A>T	c.(877-879)AAG>ATG	p.K293M	TP53BP1_uc010udp.1_Missense_Mutation_p.K293M|TP53BP1_uc001zrq.3_Missense_Mutation_p.K298M|TP53BP1_uc001zrr.3_Missense_Mutation_p.K298M|TP53BP1_uc010udq.1_Missense_Mutation_p.K298M	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	293					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		CTCTGGTGACTTCTGAATCTG	0.443000								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					17	97					0	0	1	0	0
SORD	6652	broad.mit.edu	37	15	45357500	45357500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:45357500G>A	uc001zul.3	+	5	598	c.457G>A	c.(457-459)GCC>ACC	p.A153T	SORD_uc010uel.1_RNA|SORD_uc001zum.3_Missense_Mutation_p.A153T|SORD_uc010bdz.2_Missense_Mutation_p.A74T	NM_003104	NP_003095	Q00796	DHSO_HUMAN	sorbitol dehydrogenase	153					fructose biosynthetic process|glucose metabolic process|L-xylitol catabolic process|sorbitol catabolic process|sperm motility	cilium|extracellular space|flagellum|membrane fraction|mitochondrial membrane|soluble fraction	L-iditol 2-dehydrogenase activity|NAD binding|sugar binding|zinc ion binding				0		all_cancers(109;3.43e-12)|all_epithelial(112;2.33e-10)|Lung NSC(122;6.01e-07)|all_lung(180;4.38e-06)|Melanoma(134;0.0122)		all cancers(107;1.6e-18)|GBM - Glioblastoma multiforme(94;4.95e-07)|COAD - Colon adenocarcinoma(120;0.0704)|Colorectal(133;0.0706)	NADH(DB00157)	TGAGGAAGGCGCCCTGATCGA	0.488000													50	194					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48713792	48713792	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:48713792C>T	uc001zwx.1	-	62	7990	c.7662G>A	c.(7660-7662)CGG>CGA	p.R2554R	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2554	EGF-like 44; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GTGAGAATCCCCGCTGGCATT	0.527000													16	23					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48808426	48808426	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:48808426G>A	uc001zwx.1	-	11	1609	c.1281C>T	c.(1279-1281)GTC>GTT	p.V427V		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	427	Pro-rich.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GTGGTCGAGGGACCGGAATTT	0.473000													142	158					0	0	1	0	0
GALK2	2585	broad.mit.edu	37	15	49531560	49531560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:49531560C>T	uc001zxj.1	+	5	598	c.500C>T	c.(499-501)TCC>TTC	p.S167F	GALK2_uc001zxi.1_Missense_Mutation_p.S156F|GALK2_uc010ufb.1_Missense_Mutation_p.S143F|GALK2_uc001zxk.2_RNA|GALK2_uc010ufc.1_Missense_Mutation_p.S143F	NM_002044	NP_002035	Q01415	GALK2_HUMAN	galactokinase 2 isoform 1	167					galactose metabolic process	cytoplasm	ATP binding|galactokinase activity|N-acetylgalactosamine kinase activity			breast(1)	1		all_lung(180;0.000325)		all cancers(107;3.71e-08)|GBM - Glioblastoma multiforme(94;7e-05)		AGGAATCTATCCAAGGTAACT	0.448000													31	34					0	0	1	0	0
AP4E1	23431	broad.mit.edu	37	15	51250729	51250729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:51250729C>T	uc001zyx.1	+	14	1619	c.1589C>T	c.(1588-1590)CCA>CTA	p.P530L		NM_007347	NP_031373	Q9UPM8	AP4E1_HUMAN	adaptor-related protein complex 4, epsilon 1	530					intracellular protein transport|vesicle-mediated transport	COPI vesicle coat	binding|structural molecule activity				0				all cancers(107;0.000893)|GBM - Glioblastoma multiforme(94;0.00364)		AAGGAAACGCCAGAGGAAGTT	0.343000													11	11					0	0	1	0	0
TMOD3	29766	broad.mit.edu	37	15	52188700	52188700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:52188700C>T	uc002abm.2	+	7	931	c.712C>T	c.(712-714)CGG>TGG	p.R238W	TMOD3_uc010bfc.1_RNA	NM_014547	NP_055362	Q9NYL9	TMOD3_HUMAN	tropomodulin 3 (ubiquitous)	238						cytoplasm|cytoskeleton	actin binding|tropomyosin binding			ovary(1)	1				all cancers(107;0.00194)		TGCAGCCACCCGGAGCAATGA	0.398000													79	118					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54841879	54841879	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:54841879C>T	uc002ack.2	+	26	5867	c.5867C>T	c.(5866-5868)TCC>TTC	p.S1956F		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1956	MHD2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GGACAATTATCCAAACTGAAG	0.348000													36	51					0	0	1	0	0
PRTG	283659	broad.mit.edu	37	15	56032809	56032809	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:56032809G>A	uc002adg.2	-	2	216	c.168C>T	c.(166-168)GTC>GTT	p.V56V		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	56	Ig-like 1.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		AATCTAAAACGACTGGGTCCT	0.408000													80	102					0	0	1	0	0
CCNB2	9133	broad.mit.edu	37	15	59406711	59406711	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:59406711C>T	uc002afz.2	+	4	484	c.336C>T	c.(334-336)GCC>GCT	p.A112A	CCNB2_uc010bge.2_Silent_p.A31A	NM_004701	NP_004692	O95067	CCNB2_HUMAN	cyclin B2	112					cell cycle checkpoint|cell division|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	centrosome|cytosol|nucleus	protein kinase binding				0						TTTCTGATGCCTTGCTCTGCA	0.473000													37	62					0	0	1	0	0
MYO1E	4643	broad.mit.edu	37	15	59564525	59564525	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:59564525A>C	uc002aga.2	-	2	499	c.127T>G	c.(127-129)TAC>GAC	p.Y43D		NM_004998	NP_004989	Q12965	MYO1E_HUMAN	myosin IE	43	Myosin head-like.				actin filament-based movement	myosin complex	actin binding|ATP binding|ATPase activity, coupled|calmodulin binding|microfilament motor activity			central_nervous_system(3)	3				all cancers(107;0.207)		TCATCCATGTATCTCTTCTTC	0.403000													36	95					0	0	1	0	0
TLN2	83660	broad.mit.edu	37	15	62949984	62949984	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:62949984C>T	uc002alb.3	+	6	675	c.675C>T	c.(673-675)ATC>ATT	p.I225I		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	225	FERM.				cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						GGGATGACATCCTGAATGGCT	0.498000													47	72					0	0	1	0	0
ZNF609	23060	broad.mit.edu	37	15	64972383	64972383	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:64972383G>A	uc002ann.2	+	6	3770	c.3770_splice	c.e6-1	p.G1257_splice		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609							nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						TCCTTCCACAGGTTCCTACCT	0.517000													86	77					0	0	1	0	0
CILP	8483	broad.mit.edu	37	15	65489678	65489678	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:65489678C>T	uc002aon.2	-	9	3127	c.2946G>A	c.(2944-2946)GGG>GGA	p.G982G		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	982					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						CATACAGCTTCCCCACTGTCT	0.557000													75	99					0	0	1	0	0
IGDCC4	57722	broad.mit.edu	37	15	65686869	65686869	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:65686869G>A	uc002aou.1	-	9	1804	c.1594C>T	c.(1594-1596)CAG>TAG	p.Q532*	IGDCC4_uc002aot.1_Nonsense_Mutation_p.Q120*	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	532	Fibronectin type-III 2.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						AGGGAGAGCTGGGGTGCTGCA	0.428000													68	86					0	0	1	0	0
DPP8	54878	broad.mit.edu	37	15	65804671	65804671	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:65804671T>C	uc002aov.2	-	2	1847	c.269A>G	c.(268-270)GAT>GGT	p.D90G	DPP8_uc002aow.2_Missense_Mutation_p.D90G|DPP8_uc010uiv.1_RNA|DPP8_uc002aox.2_Missense_Mutation_p.D74G|DPP8_uc002aoy.2_Missense_Mutation_p.D90G|DPP8_uc002aoz.2_Missense_Mutation_p.D74G|DPP8_uc010bhj.2_Missense_Mutation_p.D90G	NM_130434	NP_569118	Q6V1X1	DPP8_HUMAN	dipeptidyl peptidase 8 isoform 1	90					immune response|proteolysis	cytoplasm|membrane|nucleus	aminopeptidase activity|dipeptidyl-peptidase activity|serine-type peptidase activity			ovary(1)	1						TCCATCTGGATCATTCCTCTT	0.403000													25	92					0	0	1	0	0
MAP2K1	5604	broad.mit.edu	37	15	66782952	66782952	+	Nonstop_Mutation	SNP	A	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:66782952A>C	uc010bhq.2	+	11	1656	c.1181A>C	c.(1180-1182)TAA>TCA	p.*394S	MAP2K1_uc010ujp.1_Nonstop_Mutation_p.*372S|SNAPC5_uc002apt.1_Nonsense_Mutation_p.L44*|SNAPC5_uc002apu.1_3'UTR	NM_002755	NP_002746	Q02750	MP2K1_HUMAN	mitogen-activated protein kinase kinase 1	394					activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|plasma membrane	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						GCTGGCGTCTAAGTGTTTGGG	0.542000									Cardiofaciocutaneous_syndrome				5	112					0	0	1	0	0
THSD4	79875	broad.mit.edu	37	15	71952944	71952944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:71952944G>A	uc002atb.1	+	7	1307	c.1228G>A	c.(1228-1230)GGC>AGC	p.G410S	THSD4_uc002atd.1_Missense_Mutation_p.G84S|THSD4_uc010ukg.1_Missense_Mutation_p.G50S|THSD4_uc002ate.2_Missense_Mutation_p.G50S	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	410						proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						AGACAACACGGGCTGTCAGGT	0.532000													136	146					0	0	1	0	0
NEO1	4756	broad.mit.edu	37	15	73541499	73541499	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:73541499A>T	uc002avm.3	+	10	1847	c.1705A>T	c.(1705-1707)ATT>TTT	p.I569F	NEO1_uc010ukx.1_Missense_Mutation_p.I569F|NEO1_uc010uky.1_Missense_Mutation_p.I569F|NEO1_uc010ukz.1_5'UTR|NEO1_uc002avn.3_Missense_Mutation_p.I234F	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	569	Extracellular (Potential).|Fibronectin type-III 2.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						CAATGGGGAAATTCAGAATTA	0.438000													42	62					0	0	1	0	0
CYP11A1	1583	broad.mit.edu	37	15	74632090	74632090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:74632090G>A	uc002axt.2	-	6	1150	c.995C>T	c.(994-996)TCC>TTC	p.S332F	CYP11A1_uc002axs.2_Missense_Mutation_p.S174F|CYP11A1_uc010bjm.1_Missense_Mutation_p.S174F|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Intron|CYP11A1_uc010bjp.1_RNA|CYP11A1_uc010ulj.1_Missense_Mutation_p.S112F	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	332					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	CAGGGTCATGGACGTCTGGTG	0.582000													44	74					0	0	1	0	0
EDC3	80153	broad.mit.edu	37	15	74963887	74963888	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:74963887_74963888GG>AA	uc002ayn.2	-	6	880_881	c.392_393CC>TT	c.(391-393)TCC>TTT	p.S131F	EDC3_uc002ayo.2_Missense_Mutation_p.S131F|EDC3_uc002aym.2_Missense_Mutation_p.S131F	NM_001142443	NP_001135915	Q96F86	EDC3_HUMAN	enhancer of mRNA decapping 3	131					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1						GCTGCTGCGGGGAAACGGCAAC	0.520000													79	96					0	0	1	0	0
PPCDC	60490	broad.mit.edu	37	15	75341001	75341001	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:75341001C>T	uc002azo.2	+	5	581	c.468C>T	c.(466-468)CTC>CTT	p.L156L		NM_021823	NP_068595	Q96CD2	COAC_HUMAN	phosphopantothenoylcysteine decarboxylase	156					coenzyme A biosynthetic process|pantothenate metabolic process	cytosol	phosphopantothenoylcysteine decarboxylase activity				0						TAGACCAGCTCAAGGCCTTTG	0.562000													105	121					0	0	1	0	0
CSPG4	1464	broad.mit.edu	37	15	75980951	75980951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:75980951G>A	uc002baw.2	-	3	2548	c.2455C>T	c.(2455-2457)CCA>TCA	p.P819S		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	819	CSPG 4.|Extracellular (Potential).|Gly/Ser-rich (glycosaminoglycan attachment domain).|Interaction with COL5A1 (By similarity).|Interaction with COL6A2 (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						TGGAAGGTTGGGGGGCTTGGG	0.612000													78	124					0	0	1	0	0
SGK269	79834	broad.mit.edu	37	15	77425666	77425666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:77425666G>A	uc002bcm.2	-	5	4066	c.3758C>T	c.(3757-3759)TCC>TTC	p.S1253F		NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1253					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		GCTGGAGAGGGATTCCATGCT	0.537000													52	65					0	0	1	0	0
CHRNA5	1138	broad.mit.edu	37	15	78882618	78882618	+	Silent	SNP	C	T	T	rs141986748		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:78882618C>T	uc002bdy.2	+	5	1047	c.885C>T	c.(883-885)TTC>TTT	p.F295F	CHRNA5_uc002bdz.2_Intron	NM_000745	NP_000736	P30532	ACHA5_HUMAN	cholinergic receptor, nicotinic, alpha 5	295	Helical; (Potential).				behavioral response to nicotine	cell junction|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TGACTGTCTTCCTTCTGGTTA	0.358000													42	48					0	0	1	0	0
CHRNA5	1138	broad.mit.edu	37	15	78885442	78885442	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:78885442A>T	uc002bdy.2	+	6	1416	c.1254A>T	c.(1252-1254)GAA>GAT	p.E418D	CHRNA3_uc002bea.2_RNA|CHRNA3_uc002beb.2_3'UTR|CHRNA5_uc002bdz.2_Missense_Mutation_p.K156M|CHRNA3_uc010blg.1_RNA	NM_000745	NP_000736	P30532	ACHA5_HUMAN	cholinergic receptor, nicotinic, alpha 5	418	Cytoplasmic (Potential).				behavioral response to nicotine	cell junction|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AGGTTGTTGAAGATTGGAAAT	0.318000													56	76					0	0	1	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	82637079	82637079	+	RNA	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:82637079C>T	uc002bgx.2	-	1		c.53G>A						A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						ctccagcTCCCGCAGAGTCTC	0.438000													5	5					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88423659	88423659	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:88423659C>A	uc002bme.1	-	18	2338	c.2176G>T	c.(2176-2178)GTG>TTG	p.V726L	NTRK3_uc002bmh.2_Missense_Mutation_p.V704L|NTRK3_uc002bmf.1_Missense_Mutation_p.V712L	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	726	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			TGTCCTCCCACCTAAAAGGGG	0.502000			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			17	30					2.32416e-17	2.35804e-17	1	1	0
ACAN	176	broad.mit.edu	37	15	89401192	89401192	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:89401192C>T	uc010upo.1	+	12	5750	c.5376C>T	c.(5374-5376)GTC>GTT	p.V1792V	ACAN_uc010upp.1_Silent_p.V1792V|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1792					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CATCTGGGGTCCCTGATCTCA	0.527000													23	30					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89416215	89416215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:89416215C>T	uc010upo.1	+	16	7666	c.7292C>T	c.(7291-7293)CCC>CTC	p.P2431L	ACAN_uc010upp.1_Missense_Mutation_p.P2393L|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2431					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			AATGATGTTCCCTGCAATTAC	0.557000													27	39					0	0	1	0	0
C15orf42	90381	broad.mit.edu	37	15	90170219	90170219	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:90170219G>T	uc002boe.2	+	22	5635	c.5635G>T	c.(5635-5637)GAA>TAA	p.E1879*	C15orf42_uc010upv.1_RNA	NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	1879					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			CTCCACTGTAGAAGACTCTCC	0.428000													227	256					1.01307e-103	1.04727e-103	1	1	0
WDR93	56964	broad.mit.edu	37	15	90281315	90281316	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:90281315_90281316CC>TA	uc002boj.2	+	16	1910_1911	c.1809_1810CC>TA	c.(1807-1812)ATCCAA>ATTAAA	p.Q604K	WDR93_uc010bnr.2_Missense_Mutation_p.Q576K|WDR93_uc010upz.1_Missense_Mutation_p.Q321K	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	604					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			ATGCTGGAATCCAATATTCTGT	0.426000													180	315					0	0	1	0	0
CRTC3	64784	broad.mit.edu	37	15	91136933	91136933	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:91136933C>T	uc002bpp.2	+	3	403	c.297C>T	c.(295-297)TCC>TCT	p.S99S	CRTC3_uc002bpn.2_Intron|CRTC3_uc002bpo.2_Silent_p.S99S	NM_022769	NP_073606	Q6UUV7	CRTC3_HUMAN	transducer of regulated CREB protein 3 isoform	99	Required for interaction with HTLV-1 TAX.				interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus			CRTC3/MAML2(26)	salivary_gland(26)|ovary(1)	27	Melanoma(11;0.00551)|Lung NSC(78;0.0931)|all_lung(78;0.163)		BRCA - Breast invasive adenocarcinoma(143;0.0745)			AGAGGCCATCCAGGAACCGCT	0.537000			T	MAML2	salivary gland mucoepidermoid								61	88					0	0	1	0	0
PRC1	9055	broad.mit.edu	37	15	91523621	91523621	+	Splice_Site	SNP	T	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:91523621T>G	uc002bqm.2	-	7	980	c.823_splice	c.e7-1	p.L275_splice	PRC1_uc002bqn.2_Splice_Site_p.L275_splice|PRC1_uc002bqo.2_Splice_Site_p.L275_splice|PRC1_uc010uqs.1_Splice_Site_p.L234_splice	NM_003981	NP_003972	O43663	PRC1_HUMAN	protein regulator of cytokinesis 1 isoform 1						cytokinesis|mitotic spindle elongation	cytoplasm|nucleus|spindle microtubule|spindle pole	protein binding			ovary(1)|skin(1)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					TAATTGCAGCTGAAAGAAAGA	0.408000													43	68					0	0	1	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92647730	92647730	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:92647730C>T	uc002bqx.2	+	4	1168	c.967C>T	c.(967-969)CTG>TTG	p.L323L	SLCO3A1_uc002bqy.2_Silent_p.L323L|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Silent_p.L265L	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	323	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			GAGGCACCCCCTGGAGCCAGA	0.617000													23	40					0	0	1	0	0
SOLH	6650	broad.mit.edu	37	16	597478	597479	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:597478_597479CC>TT	uc002chi.2	+	4	1003_1004	c.640_641CC>TT	c.(640-642)CCA>TTA	p.P214L	SOLH_uc002chh.1_Missense_Mutation_p.P214L	NM_005632	NP_005623	O75808	CAN15_HUMAN	small optic lobes	214					proteolysis	intracellular	calcium-dependent cysteine-type endopeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)	2		Hepatocellular(780;0.00335)				GGCCAACCCCCCAGCCACCAGC	0.748000													23	4					0	0	1	0	0
WDR24	84219	broad.mit.edu	37	16	734758	734758	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:734758G>A	uc002ciz.1	-	9	3109	c.2349C>T	c.(2347-2349)TGC>TGT	p.C783C	JMJD8_uc002ciw.1_5'Flank|JMJD8_uc002cix.1_5'Flank|JMJD8_uc002ciy.1_5'Flank	NM_032259	NP_115635	Q96S15	WDR24_HUMAN	WD repeat domain 24	913										ovary(1)|central_nervous_system(1)	2		Hepatocellular(780;0.0218)				AGAGGTGGCCGCAGCCTGCGG	0.692000													3	19					0	0	1	0	0
PKD1	5310	broad.mit.edu	37	16	2153633	2153633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:2153633G>A	uc002cos.1	-	23	8634	c.8425C>T	c.(8425-8427)CCC>TCC	p.P2809S	PKD1_uc002cot.1_Missense_Mutation_p.P2809S|PKD1_uc010bse.1_RNA	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	2809	Extracellular (Potential).|REJ.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						AAAGCCTCGGGGATGGAGAAG	0.647000													28	47					0	0	1	0	0
OR1F1	4992	broad.mit.edu	37	16	3254603	3254603	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:3254603C>T	uc010uwu.1	+	1	357	c.357C>T	c.(355-357)GCC>GCT	p.A119A		NM_012360	NP_036492	O43749	OR1F1_HUMAN	olfactory receptor, family 1, subfamily F,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGTGATGGCCTATGACCACT	0.502000													171	31					0	0	1	0	0
NLRC3	197358	broad.mit.edu	37	16	3613385	3613385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:3613385G>A	uc010btn.2	-	5	1964	c.1553C>T	c.(1552-1554)TCC>TTC	p.S518F		NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	518					I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						CAAGAGGCCGGAGAGGAAGCG	0.687000													7	3					0	0	1	0	0
ACSM1	116285	broad.mit.edu	37	16	20702391	20702391	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:20702391C>T	uc002dhm.1	-	1	188	c.120G>A	c.(118-120)TGG>TGA	p.W40*	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Nonsense_Mutation_p.W40*	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	40					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding	p.W40*(1)		central_nervous_system(1)|skin(1)	2						CATAGTCATTCCATCTTGGGG	0.498000													101	15					0	0	1	0	0
VWA3A	146177	broad.mit.edu	37	16	22154060	22154060	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:22154060A>G	uc010vbq.1	+	25	2662	c.2566A>G	c.(2566-2568)AAG>GAG	p.K856E	VWA3A_uc010bxd.2_RNA|VWA3A_uc002dkg.3_5'Flank	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	856						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		CTTACCCAGAAAGGATACAGT	0.438000													7	2					0	0	1	0	0
SCNN1G	6340	broad.mit.edu	37	16	23208738	23208738	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:23208738G>A	uc002dlm.1	+	6	1206	c.1067G>A	c.(1066-1068)GGA>GAA	p.G356E		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	356	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	ACCTCTATAGGAATGCACCTG	0.453000													39	7					0	0	1	0	0
YPEL3	83719	broad.mit.edu	37	16	30106190	30106190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:30106190C>T	uc002dwm.2	-	4	376	c.190G>A	c.(190-192)GAG>AAG	p.E64K	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TBX6_uc010veh.1_5'Flank|TBX6_uc002dwk.1_5'Flank|YPEL3_uc002dwl.2_Missense_Mutation_p.E102K|YPEL3_uc002dwn.1_Missense_Mutation_p.E102K|uc002dwo.1_5'Flank	NM_001145524	NP_001138996	P61236	YPEL3_HUMAN	yippee-like 3 isoform 2	64						nucleolus					0						AGCACCCGCTCCTCGGCTGGC	0.637000													100	15					0	0	1	0	0
ITGAL	3683	broad.mit.edu	37	16	30516734	30516734	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:30516734G>T	uc002dyi.3	+	20	2493	c.2317G>T	c.(2317-2319)GAG>TAG	p.E773*	ITGAL_uc002dyj.3_Nonsense_Mutation_p.E689*|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	773	Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	GAACTGTGGGGAGGACAAGAA	0.527000													151	34					2.283e-98	2.35849e-98	1	1	0
SRCAP	10847	broad.mit.edu	37	16	30750006	30750006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:30750006C>T	uc002dze.1	+	34	9030	c.8645C>T	c.(8644-8646)TCA>TTA	p.S2882L	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.S2677L	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2882	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GAGGCACCCTCATCCACCTTG	0.587000													40	5					0	0	1	0	0
LONP2	83752	broad.mit.edu	37	16	48385556	48385556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:48385556C>T	uc002efi.1	+	15	2491	c.2402C>T	c.(2401-2403)CCT>CTT	p.P801L	LONP2_uc002efj.1_Missense_Mutation_p.P757L	NM_031490	NP_113678	Q86WA8	LONP2_HUMAN	peroxisomal LON protease-like	801					misfolded or incompletely synthesized protein catabolic process|protein targeting to peroxisome|signal peptide processing	nucleoid|peroxisomal matrix	ATP binding|ATP-dependent peptidase activity|enzyme binding|sequence-specific DNA binding|serine-type endopeptidase activity				0						GTCATTATTCCTCGGAGAAAT	0.448000													30	9					0	0	1	0	0
CX3CL1	6376	broad.mit.edu	37	16	57416246	57416246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:57416246G>A	uc002eli.2	+	3	563	c.496G>A	c.(496-498)GGG>AGG	p.G166R		NM_002996	NP_002987	P78423	X3CL1_HUMAN	chemokine (C-X3-C motif) ligand 1 precursor	166	Mucin-like stalk.|Extracellular (Potential).				cell adhesion|cytokine-mediated signaling pathway|defense response|immune response|leukocyte adhesive activation|positive regulation of calcium-independent cell-cell adhesion|positive regulation of inflammatory response	cell surface|extracellular space|integral to membrane|plasma membrane	chemokine activity				0						TGGTTCCTCAGGGACCAGGCT	0.672000													39	9					0	0	1	0	0
ZDHHC1	29800	broad.mit.edu	37	16	67432187	67432187	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:67432187G>A	uc010vjm.1	-	8	1159	c.855C>T	c.(853-855)CAC>CAT	p.H285H		NM_013304	NP_037436	Q8WTX9	ZDHC1_HUMAN	zinc finger, DHHC-type containing 1	285						integral to membrane	DNA binding|zinc ion binding				0		Ovarian(137;0.223)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0178)|all cancers(182;5.71e-53)|Epithelial(162;4.73e-52)|OV - Ovarian serous cystadenocarcinoma(108;1.53e-29)|Kidney(780;4.37e-05)|BRCA - Breast invasive adenocarcinoma(181;5.8e-05)|GBM - Glioblastoma multiforme(240;0.0022)		GTGGTGGGCGGTGCTGCACGA	0.622000													77	142					0	0	1	0	0
LCAT	3931	broad.mit.edu	37	16	67974200	67974200	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:67974200G>A	uc002euy.1	-	6	941	c.930C>T	c.(928-930)CAC>CAT	p.H310H		NM_000229	NP_000220	P04180	LCAT_HUMAN	lecithin-cholesterol acyltransferase precursor	310					cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|phosphatidylcholine biosynthetic process|reverse cholesterol transport|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein A-I binding|phosphatidylcholine-sterol O-acyltransferase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00418)|Epithelial(162;0.0183)|all cancers(182;0.12)		CTTCCTCAAAGTGCAGGTCTG	0.572000													80	13					0	0	1	0	0
NFAT5	10725	broad.mit.edu	37	16	69718851	69718851	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:69718851C>T	uc002exm.1	+	10	2906	c.1698C>T	c.(1696-1698)TGC>TGT	p.C566C	NFAT5_uc002exh.1_Silent_p.C359C|NFAT5_uc002exi.2_Silent_p.C490C|NFAT5_uc002exj.1_Silent_p.C490C|NFAT5_uc002exk.1_Silent_p.C490C|NFAT5_uc002exl.1_Silent_p.C584C|NFAT5_uc002exn.1_Silent_p.C583C	NM_006599	NP_006590	O94916	NFAT5_HUMAN	nuclear factor of activated T-cells 5 isoform c	566					excretion|signal transduction|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						CAAGACCTTGCTCTTTTGAAG	0.343000													54	14					0	0	1	0	0
COG4	25839	broad.mit.edu	37	16	70546163	70546163	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:70546163G>A	uc002ezc.2	-	5	728	c.717C>T	c.(715-717)TTC>TTT	p.F239F	COG4_uc002ezb.2_5'Flank|COG4_uc010cfu.2_RNA|COG4_uc002ezd.2_Silent_p.F239F|COG4_uc002eze.2_5'UTR	NM_015386	NP_056201	Q9H9E3	COG4_HUMAN	component of oligomeric golgi complex 4	235					Golgi organization|Golgi vesicle prefusion complex stabilization|protein transport|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0		Ovarian(137;0.0694)				GGTACTCCGAGAACTTTCTTA	0.517000													45	5					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70889118	70889118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:70889118G>A	uc002ezr.2	-	73	12481	c.12353C>T	c.(12352-12354)TCC>TTC	p.S4118F	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4119										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GTCCTGGAAGGAAAAATCGAA	0.527000													48	11					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72821894	72821895	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:72821894_72821895GG>AA	uc002fck.2	-	10	10953_10954	c.10280_10281CC>TT	c.(10279-10281)ACC>ATT	p.T3427I	ZFHX3_uc002fcl.2_Missense_Mutation_p.T2513I	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	3427					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				CCTCACGGGGGGTGTTTTTCTG	0.554000													114	16					0	0	1	0	0
GLG1	2734	broad.mit.edu	37	16	74525028	74525028	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:74525028G>A	uc002fcy.3	-	8	1370	c.1320C>T	c.(1318-1320)ATC>ATT	p.I440I	GLG1_uc002fcx.2_Silent_p.I440I|GLG1_uc002fcw.3_Silent_p.I429I|GLG1_uc002fcz.3_Intron	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	440	Extracellular (Potential).|Cys-rich GLG1 6.					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						AGCTTAGGATGATCTCAGGGC	0.512000													136	27					0	0	1	0	0
LDHD	197257	broad.mit.edu	37	16	75147556	75147556	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:75147556C>T	uc002fdm.2	-	8	1079	c.1032G>A	c.(1030-1032)GAG>GAA	p.E344E	LDHD_uc002fdn.2_Silent_p.E321E	NM_153486	NP_705690	Q86WU2	LDHD_HUMAN	D-lactate dehydrogenase isoform 1 precursor	344							D-lactate dehydrogenase (cytochrome) activity|flavin adenine dinucleotide binding|protein binding				0						GCTGGACTATCTCCTCTGCAG	0.672000													59	13					0	0	1	0	0
ADAT1	23536	broad.mit.edu	37	16	75651152	75651152	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:75651152G>A	uc002feo.1	-	6	414	c.312C>T	c.(310-312)CTC>CTT	p.L104L	ADAT1_uc002fep.1_5'UTR	NM_012091	NP_036223	Q9BUB4	ADAT1_HUMAN	adenosine deaminase, tRNA-specific 1	104	A to I editase.				tRNA processing		metal ion binding|RNA binding|tRNA-specific adenosine deaminase activity			ovary(1)|skin(1)	2						CTGCCAACTGGAGTTGGTGGA	0.458000													113	17					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81181922	81181922	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:81181922C>T	uc002fgh.1	-	29	4794	c.4794G>A	c.(4792-4794)CTG>CTA	p.L1598L	PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	1598	Helical; (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TGGAGCTCTCCAGGCCAATCA	0.557000													71	12					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81219192	81219192	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:81219192G>A	uc002fgh.1	-	11	1902	c.1902C>T	c.(1900-1902)ACC>ACT	p.T634T	PKD1L2_uc002fgj.2_Silent_p.T634T	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	634	REJ.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCAGGCGCAGGGTGACAGCAG	0.637000													55	4					0	0	1	0	0
CDH13	1012	broad.mit.edu	37	16	83636188	83636188	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:83636188A>C	uc002fgx.2	+	8	1210	c.1090A>C	c.(1090-1092)ACC>CCC	p.T364P	CDH13_uc010vns.1_Missense_Mutation_p.T411P|CDH13_uc010vnt.1_Missense_Mutation_p.T110P|CDH13_uc010vnu.1_Missense_Mutation_p.T325P	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	364	Cadherin 3.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		ACCAAAATTCACCAAGAAAGA	0.473000													83	18					0	0	1	0	0
OSGIN1	29948	broad.mit.edu	37	16	83991322	83991323	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:83991322_83991323CC>TT	uc002fha.2	+	3	678_679	c.295_296CC>TT	c.(295-297)CCC>TTC	p.P99F	OSGIN1_uc002fhb.2_Missense_Mutation_p.P16F|OSGIN1_uc002fhc.2_Missense_Mutation_p.P16F	NM_013370	NP_037502	Q9UJX0	OSGI1_HUMAN	oxidative stress induced growth inhibitor 1	99					cell differentiation|multicellular organismal development|negative regulation of cell growth		growth factor activity				0						CAGCTCAGAGCCCCTCCCGGTC	0.693000													18	2					0	0	1	0	0
CDH15	1013	broad.mit.edu	37	16	89245980	89245980	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:89245980C>T	uc002fmt.2	+	2	276	c.199C>T	c.(199-201)CAG>TAG	p.Q67*	CDH15_uc010cij.1_Nonsense_Mutation_p.Q67*	NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	67	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		CCCCCTGGTTCAGGTGAGCAG	0.692000													70	19					0	0	1	0	0
RNMTL1	55178	broad.mit.edu	37	17	695156	695156	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:695156C>T	uc002frw.2	+	4	1216	c.1110C>T	c.(1108-1110)GCC>GCT	p.A370A		NM_018146	NP_060616	Q9HC36	RMTL1_HUMAN	RNA methyltransferase like 1	370					RNA processing		protein binding|RNA binding|RNA methyltransferase activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0219)		TGCAGCTGGCCGAGAGCACTG	0.617000													51	107					0	0	1	0	0
MYO1C	4641	broad.mit.edu	37	17	1371150	1371150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:1371150G>A	uc002fsp.2	-	29	3171	c.2951C>T	c.(2950-2952)GCG>GTG	p.A984V	MYO1C_uc002fsn.2_Missense_Mutation_p.A965V|MYO1C_uc002fso.2_Missense_Mutation_p.A949V|MYO1C_uc010vqj.1_Missense_Mutation_p.A949V	NM_001080779	NP_001074248	O00159	MYO1C_HUMAN	myosin IC isoform a	984					mRNA transport|protein transport|transmembrane transport	basal plasma membrane|cytoplasm|filamentous actin|lateral plasma membrane|nuclear pore|nucleolus|nucleoplasm|stereocilium membrane	actin binding|ATP binding|calmodulin binding|motor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		CTTATTGTCCGCACGCTGTAC	0.398000													3	67					0	0	1	0	0
SMG6	23293	broad.mit.edu	37	17	2090052	2090052	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:2090052C>T	uc002fub.1	-	12	3115	c.3060G>A	c.(3058-3060)AAG>AAA	p.K1020K	SMG6_uc010vqv.1_Silent_p.K112K	NM_017575	NP_060045	Q86US8	EST1A_HUMAN	Smg-6 homolog, nonsense mediated mRNA decay	1020					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation|telomere maintenance	chromosome, telomeric region|cytosol|nucleolus|telomerase holoenzyme complex	endoribonuclease activity|metal ion binding|protein binding|telomeric DNA binding			central_nervous_system(2)|lung(1)|kidney(1)	4						GGAGCAGCTCCTTCAGGTCCG	0.582000													15	44					0	0	1	0	0
SGSM2	9905	broad.mit.edu	37	17	2266817	2266817	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:2266817G>C	uc002fun.3	+	7	906	c.731G>C	c.(730-732)CGC>CCC	p.R244P	SGSM2_uc002fum.3_Missense_Mutation_p.R244P|SGSM2_uc010vqw.1_Missense_Mutation_p.R244P	NM_001098509	NP_001091979	O43147	SGSM2_HUMAN	RUN and TBC1 domain containing 1 isoform 2	244						intracellular	Rab GTPase activator activity				0				Colorectal(2;5.15e-05)|READ - Rectum adenocarcinoma(2;0.000115)		GCCTGTGCCCGCGAGTGTGTG	0.637000													14	45					0	0	1	0	0
P2RX1	5023	broad.mit.edu	37	17	3801800	3801800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:3801800G>A	uc002fww.2	-	10	1451	c.1010C>T	c.(1009-1011)TCT>TTT	p.S337F		NM_002558	NP_002549	P51575	P2RX1_HUMAN	purinergic receptor P2X1	337	Extracellular (Potential).|Pore-forming motif (Potential).				platelet activation	integral to plasma membrane	calcium channel activity|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity			ovary(1)|skin(1)	2				LUAD - Lung adenocarcinoma(2;1.9e-05)|Lung(3;0.0173)		GCCAATTCCAGAGCCGATGGT	0.592000													20	64					0	0	1	0	0
MYBBP1A	10514	broad.mit.edu	37	17	4445943	4445943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:4445943G>A	uc002fyb.3	-	21	3048	c.2986C>T	c.(2986-2988)CCC>TCC	p.P996S	MYBBP1A_uc002fxz.3_Missense_Mutation_p.P996S|MYBBP1A_uc002fya.3_5'Flank|MYBBP1A_uc010vsa.1_Missense_Mutation_p.P38S	NM_014520	NP_055335	Q9BQG0	MBB1A_HUMAN	MYB binding protein 1a isoform 2	996					nucleocytoplasmic transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NLS-dependent protein nuclear import complex|nucleolus	DNA binding|DNA-directed DNA polymerase activity|transcription factor binding			ovary(1)|skin(1)	2						AGGAACATGGGAACTGTGAGG	0.632000													131	70					0	0	1	0	0
ZMYND15	84225	broad.mit.edu	37	17	4645012	4645012	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:4645012G>A	uc002fyt.2	+	3	767	c.728G>A	c.(727-729)TGG>TAG	p.W243*	CXCL16_uc002fyr.3_5'Flank|CXCL16_uc002fys.3_5'Flank|ZMYND15_uc002fyv.2_Nonsense_Mutation_p.W243*|ZMYND15_uc002fyu.2_Nonsense_Mutation_p.W243*	NM_032265	NP_115641	Q9H091	ZMY15_HUMAN	zinc finger, MYND-type containing 15 isoform 2	243							zinc ion binding				0						CTGGCTCCTTGGGCCTATGCT	0.622000													37	65					0	0	1	0	0
MINK1	50488	broad.mit.edu	37	17	4794871	4794871	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:4794871C>A	uc010vsl.1	+	16	2057	c.1861C>A	c.(1861-1863)CCT>ACT	p.P621T	MINK1_uc010vsk.1_Missense_Mutation_p.P621T|MINK1_uc010vsm.1_Missense_Mutation_p.P601T|MINK1_uc010vsn.1_Missense_Mutation_p.P621T|MINK1_uc010vso.1_Missense_Mutation_p.P566T|MINK1_uc010vsp.1_Missense_Mutation_p.P111T	NM_153827	NP_722549	Q8N4C8	MINK1_HUMAN	misshapen-like kinase 1 isoform 3	621					JNK cascade	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)|skin(1)	6						TGACCCCGACCCTGCCATCCC	0.662000													9	26					2.17888e-05	2.19176e-05	1	1	0
CAMTA2	23125	broad.mit.edu	37	17	4881825	4881825	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:4881825G>A	uc002gah.1	-	10	1847	c.1739C>T	c.(1738-1740)CCT>CTT	p.P580L	CAMTA2_uc010cku.1_Missense_Mutation_p.P603L|CAMTA2_uc002gag.1_Missense_Mutation_p.P579L|CAMTA2_uc002gai.1_Missense_Mutation_p.P582L|CAMTA2_uc010ckv.1_Missense_Mutation_p.P227L	NM_015099	NP_055914	O94983	CMTA2_HUMAN	calmodulin binding transcription activator 2	580	IPT/TIG.				cardiac muscle hypertrophy in response to stress|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	calmodulin binding|chromatin binding|histone deacetylase binding|transcription factor binding			ovary(1)	1						TAAGACACCAGGCTGGACAAG	0.577000													135	87					0	0	1	0	0
KIF1C	10749	broad.mit.edu	37	17	4927260	4927261	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:4927260_4927261AG>GA	uc002gan.1	+	23	3452_3453	c.3126_3127AG>GA	c.(3124-3129)GGAGCG>GGGACG	p.A1043T		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	1043	Pro-rich.				microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						GATCCCGGGGAGCGGGTTCTGC	0.688000													29	53					0	0	1	0	0
TP53	7157	broad.mit.edu	37	17	7579545	7579545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:7579545C>T	uc002gim.2	-	4	336	c.142G>A	c.(142-144)GAC>AAC	p.D48N	TP53_uc002gig.1_Missense_Mutation_p.D48N|TP53_uc002gih.2_Missense_Mutation_p.D48N|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Missense_Mutation_p.D48N|TP53_uc010cni.1_Missense_Mutation_p.D48N|TP53_uc002gij.2_Missense_Mutation_p.D48N|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Missense_Mutation_p.D9N|TP53_uc010cnk.1_Missense_Mutation_p.D63N	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	48	TADII.|Interaction with HRMT1L2.		D -> G (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.D48fs*55(1)|p.D48D(1)|p.P13fs*18(1)|p.S46_D49delSPDD(1)|p.S33fs*23(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TCAATATCGTCCGGGGACAGC	0.527000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			346	237					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7678084	7678084	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:7678084G>A	uc002giu.1	+	28	4523	c.4509G>A	c.(4507-4509)CTG>CTA	p.L1503L		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1503	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CAGGCCTCCTGGACACATTGA	0.448000													34	23					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7696447	7696448	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:7696447_7696448CC>TT	uc002giu.1	+	47	7507_7508	c.7493_7494CC>TT	c.(7492-7494)CCC>CTT	p.P2498L		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2498	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TCCCAGCCACCCCTGGAGCTGA	0.515000													72	63					0	0	1	0	0
ALOXE3	59344	broad.mit.edu	37	17	8020163	8020163	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:8020163T>G	uc010cnr.2	-	3	653	c.283A>C	c.(283-285)AGT>CGT	p.S95R	ALOXE3_uc002gka.2_Missense_Mutation_p.S251R|ALOXE3_uc010vuo.1_Missense_Mutation_p.S227R|ALOXE3_uc010vup.1_RNA	NM_021628	NP_067641	Q9BYJ1	LOXE3_HUMAN	arachidonate lipoxygenase 3 isoform 2	95	PLAT.				leukotriene biosynthetic process		iron ion binding|lipoxygenase activity			skin(3)|lung(1)|central_nervous_system(1)	5						TGGGATACACTACCATCCGGT	0.567000													37	159					0	0	1	0	0
C17orf68	80169	broad.mit.edu	37	17	8141772	8141772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:8141772C>T	uc002gkq.3	-	3	432	c.373G>A	c.(373-375)GAA>AAA	p.E125K	C17orf68_uc010cnv.2_RNA	NM_025099	NP_079375	Q2NKJ3	CTC1_HUMAN	alpha accessory factor 132	125					positive regulation of DNA replication|telomere maintenance	Stn1-Ten1 complex	protein binding|single-stranded DNA binding				0						CACTCTTGTTCCAAGTCTGCC	0.542000													114	84					0	0	1	0	0
PIK3R6	146850	broad.mit.edu	37	17	8738697	8738697	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:8738697G>A	uc002glq.1	-	8	778	c.538C>T	c.(538-540)CAG>TAG	p.Q180*	PIK3R6_uc002glr.1_RNA|PIK3R6_uc002gls.1_RNA	NM_001010855	NP_001010855	Q5UE93	PI3R6_HUMAN	phosphoinositide-3-kinase, regulatory subunit 6	180					platelet activation	cytosol					0						TGCTGCGCCTGGGCCGCCTCG	0.647000													18	28					0	0	1	0	0
USP43	124739	broad.mit.edu	37	17	9580154	9580154	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:9580154C>T	uc010cod.2	+	5	925	c.925C>T	c.(925-927)CTG>TTG	p.L309L	USP43_uc002gma.3_5'UTR|USP43_uc010vva.1_Silent_p.L309L|USP43_uc010coe.2_Silent_p.L106L	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	309					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						AGTGGCAGCCCTGAGGAAGAT	0.562000													34	18					0	0	1	0	0
RCVRN	5957	broad.mit.edu	37	17	9808452	9808452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:9808452C>T	uc002gme.1	-	1	233	c.46G>A	c.(46-48)GAG>AAG	p.E16K		NM_002903	NP_002894	P35243	RECO_HUMAN	recoverin	16					visual perception		calcium ion binding|calcium sensitive guanylate cyclase activator activity				0						AGCTGCAGCTCCTCCAGGATC	0.622000													10	24					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10215381	10215381	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:10215381A>G	uc002gmk.1	-	32	4468	c.4378T>C	c.(4378-4380)TGG>CGG	p.W1460R		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1460	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TTTTGCTTCCACTCTGCAAGG	0.507000													19	40					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10299903	10299903	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:10299903C>T	uc002gmm.2	-	32	4590	c.4495G>A	c.(4495-4497)GAA>AAA	p.E1499K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1499	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CTTAGCGTTTCGAGTTGATCC	0.473000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				7	15					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10360752	10360752	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:10360752G>C	uc002gmn.2	-	16	1993	c.1882C>G	c.(1882-1884)CAA>GAA	p.Q628E	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	628	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TCAGCAGTTTGTGCCCCAGAG	0.443000													3	61					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10443985	10443985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:10443985C>T	uc010coi.2	-	11	1062	c.934G>A	c.(934-936)GAT>AAT	p.D312N	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.D312N|MYH2_uc010coj.2_Missense_Mutation_p.D312N	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	312	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						AATGGGTAATCATATGGGTTC	0.373000													38	34					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11593744	11593744	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:11593744G>T	uc002gne.2	+	20	4673	c.4605G>T	c.(4603-4605)CAG>CAT	p.Q1535H	DNAH9_uc010coo.2_Missense_Mutation_p.Q829H	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1535	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TTCGGGCACAGCTACCCCAGG	0.488000													17	30					2.39187e-15	2.42193e-15	1	1	0
NCOR1	9611	broad.mit.edu	37	17	16068475	16068475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:16068475C>T	uc002gpo.2	-	5	676	c.436G>A	c.(436-438)GAT>AAT	p.D146N	NCOR1_uc002gpn.2_Missense_Mutation_p.D146N|NCOR1_uc002gpp.1_Missense_Mutation_p.D37N|NCOR1_uc002gpr.2_Missense_Mutation_p.D37N|NCOR1_uc002gps.1_Missense_Mutation_p.D146N|NCOR1_uc010coz.1_5'UTR|NCOR1_uc010cpb.1_Missense_Mutation_p.D146N|NCOR1_uc010cpa.1_Missense_Mutation_p.D146N|NCOR1_uc002gpu.2_Missense_Mutation_p.D146N	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	146	Interaction with ZBTB33 and HEXIM1.				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		AATGCTGGATCCTTTAGAGAA	0.393000													17	119					0	0	1	0	0
ZNF287	57336	broad.mit.edu	37	17	16455387	16455387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:16455387G>A	uc002gqi.2	-	6	2522	c.2069C>T	c.(2068-2070)TCA>TTA	p.S690L		NM_020653	NP_065704	Q9HBT7	ZN287_HUMAN	zinc finger protein 287	683	C2H2-type 12.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.083)		TTGATTAAGTGATGAGGAATA	0.363000													16	44					0	0	1	0	0
ZNF624	57547	broad.mit.edu	37	17	16527375	16527375	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:16527375G>A	uc010cpi.1	-	6	908	c.825C>T	c.(823-825)CCC>CCT	p.P275P		NM_020787	NP_065838	Q9P2J8	ZN624_HUMAN	zinc finger protein 624	275					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		TACATTTGTAGGGTTTTTCCT	0.343000													23	67					0	0	1	0	0
RAI1	10743	broad.mit.edu	37	17	17701808	17701808	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:17701808T>G	uc002grm.2	+	3	6015	c.5546T>G	c.(5545-5547)ATG>AGG	p.M1849R	RAI1_uc002grn.1_Missense_Mutation_p.M1849R	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	1849						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		CAGGAGGCCATGAAGGTGGCC	0.677000													3	70					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	20744577	20744577	+	RNA	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:20744577G>A	uc010crb.1	+	1		c.237G>A								Homo sapiens cDNA clone IMAGE:6269068, partial cds.																		TGCACCTGACGGAGCATACCG	0.701000													20	84					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	20805693	20805693	+	RNA	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:20805693T>C	uc002gyg.1	+	4		c.877T>C			uc002gyh.1_RNA					Homo sapiens cDNA FLJ32911 fis, clone TESTI2006210.																		GGCGCCGGCTTCACCCTCGGC	0.557000													6	43					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	20861666	20861666	+	RNA	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:20861666G>A	uc002gyk.1	+	5		c.750G>A								Homo sapiens hypothetical protein LOC339260, mRNA (cDNA clone IMAGE:5168338), partial cds.																		ATCCCCCAAAGTGGGATACCA	0.448000													6	7					0	0	1	0	0
KCNJ12	3768	broad.mit.edu	37	17	21319147	21319147	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:21319147C>T	uc002gyv.1	+	3	1198	c.493C>T	c.(493-495)CAG>TAG	p.Q165*		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	165	Helical; Name=M2; (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	GGTGGTGGCCCAGTCCATCGT	0.622000										Prostate(3;0.18)			16	133					0	0	1	0	0
KSR1	8844	broad.mit.edu	37	17	25919417	25919417	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:25919417A>C	uc010crg.2	+	8	1195	c.750A>C	c.(748-750)GAA>GAC	p.E250D	KSR1_uc002gzj.1_RNA|KSR1_uc002gzm.2_Missense_Mutation_p.E51D	NM_014238	NP_055053	Q8IVT5	KSR1_HUMAN	kinase suppressor of ras	385	Phorbol-ester/DAG-type.				Ras protein signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(1)	4	Lung NSC(42;0.00836)		BRCA - Breast invasive adenocarcinoma(3;0.00122)	UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		GTACCAAAGAAGCCCCTGCCT	0.522000													149	101					0	0	1	0	0
SPAG5	10615	broad.mit.edu	37	17	26912209	26912209	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:26912209T>C	uc002hbq.2	-	10	2070	c.1978A>G	c.(1978-1980)AGT>GGT	p.S660G	SGK494_uc010waq.1_Intron	NM_006461	NP_006452	Q96R06	SPAG5_HUMAN	sperm associated antigen 5	660	Gln-rich.				cell division|mitosis|phosphatidylinositol-mediated signaling|spindle organization	condensed chromosome kinetochore|cytoplasm|spindle pole	protein binding			central_nervous_system(1)	1	Lung NSC(42;0.00431)					CGGGACCGACTCAGCAAAGCT	0.498000													102	71					0	0	1	0	0
FLOT2	2319	broad.mit.edu	37	17	27209606	27209606	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:27209606G>A	uc002hdc.2	-	5	573	c.450C>T	c.(448-450)CTC>CTT	p.L150L		NM_004475	NP_004466	Q14254	FLOT2_HUMAN	flotillin 2	150					cell adhesion|epidermis development	cell surface|endocytic vesicle|endosome|membrane fraction					0	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;3.26e-06)|all cancers(11;1.76e-05)|BRCA - Breast invasive adenocarcinoma(11;0.00015)|OV - Ovarian serous cystadenocarcinoma(11;0.0602)			TGGTGAAGCTGAGGATCTCAA	0.577000													109	98					0	0	1	0	0
PHF12	57649	broad.mit.edu	37	17	27233234	27233234	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:27233234C>T	uc002hdg.1	-	15	3512	c.2982G>A	c.(2980-2982)CAG>CAA	p.Q994Q	PHF12_uc010wbb.1_Silent_p.Q976Q	NM_001033561	NP_001028733	Q96QT6	PHF12_HUMAN	PHD finger protein 12 isoform 1	994					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	protein binding|zinc ion binding			ovary(1)	1	all_cancers(5;1.95e-14)|all_epithelial(6;5e-18)|Lung NSC(42;0.01)		Epithelial(11;1.64e-05)|all cancers(11;7.47e-05)|BRCA - Breast invasive adenocarcinoma(11;9.79e-05)			GCACAGGGCCCTGGTGGGGCT	0.587000													24	49					0	0	1	0	0
SEZ6	124925	broad.mit.edu	37	17	27308664	27308664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:27308664C>T	uc002hdp.2	-	2	643	c.449G>A	c.(448-450)CGA>CAA	p.R150Q	SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Missense_Mutation_p.R150Q|SEZ6_uc002hdq.1_Missense_Mutation_p.R25Q|SEZ6_uc010crz.1_Missense_Mutation_p.R150Q	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	150	Pro-rich.|Extracellular (Potential).					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			AGCTGTGATTCGAAGCATAGG	0.642000													22	8					0	0	1	0	0
SLC6A4	6532	broad.mit.edu	37	17	28543164	28543164	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:28543164G>A	uc002hey.3	-	7	1452	c.908C>T	c.(907-909)CCT>CTT	p.P303L		NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	303					response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	CCAGGCTCCAGGGAGGGTGGC	0.522000													38	78					0	0	1	0	0
LIG3	3980	broad.mit.edu	37	17	33310184	33310184	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:33310184A>G	uc002hik.1	+	2	268	c.160A>G	c.(160-162)AAG>GAG	p.K54E	LIG3_uc002hii.2_Missense_Mutation_p.K54E|LIG3_uc002hij.2_Missense_Mutation_p.K54E|LIG3_uc010cth.1_Missense_Mutation_p.K63E	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	54					base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	CCTGAGAAGAAAGCCTGTTCT	0.498000								Other_BER_factors					39	115					0	0	1	0	0
SLFN12L	342615	broad.mit.edu	37	17	33806954	33806954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:33806954C>T	uc002hjn.2	-	3	1241	c.362G>A	c.(361-363)GGA>GAA	p.G121E		NM_001145027	NP_001138499			schlafen family member 12-like											ovary(1)	1						TAGCCCTATTCCATCTTTTTT	0.383000													22	23					0	0	1	0	0
PCGF2	7703	broad.mit.edu	37	17	36891605	36891605	+	Silent	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:36891605G>T	uc002hqp.1	-	11	1149	c.906C>A	c.(904-906)CCC>CCA	p.P302P	CISD3_uc010wds.1_3'UTR|PCGF2_uc002hqn.1_3'UTR|PCGF2_uc002hqo.1_3'UTR|PCGF2_uc010cvo.1_Silent_p.P177P|PCGF2_uc002hqq.1_3'UTR	NM_007144	NP_009075	P35227	PCGF2_HUMAN	ring finger protein 110	302	Pro/Ser-rich.				negative regulation of transcription from RNA polymerase II promoter	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2	Breast(7;9.07e-22)					CTGTCGAAGGGGGAGTGGGGG	0.667000											OREG0024367	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	7					0.00621372	0.00623408	1	1	0
ZPBP2	124626	broad.mit.edu	37	17	38031532	38031532	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:38031532T>A	uc002hte.2	+	7	887	c.734T>A	c.(733-735)TTT>TAT	p.F245Y	ZPBP2_uc002htf.2_Missense_Mutation_p.F223Y	NM_199321	NP_955353	Q6X784	ZPBP2_HUMAN	zona pellucida binding protein 2 isoform 2	245					binding of sperm to zona pellucida	extracellular region				ovary(1)	1	Colorectal(19;0.000442)		Lung(15;0.00849)|LUSC - Lung squamous cell carcinoma(15;0.171)			GAAGACTTTTTTCGGAGCCAA	0.373000													29	26					0	0	1	0	0
ZPBP2	124626	broad.mit.edu	37	17	38031558	38031558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:38031558C>T	uc002hte.2	+	7	913	c.760C>T	c.(760-762)CAT>TAT	p.H254Y	ZPBP2_uc002htf.2_Missense_Mutation_p.H232Y	NM_199321	NP_955353	Q6X784	ZPBP2_HUMAN	zona pellucida binding protein 2 isoform 2	254					binding of sperm to zona pellucida	extracellular region				ovary(1)	1	Colorectal(19;0.000442)		Lung(15;0.00849)|LUSC - Lung squamous cell carcinoma(15;0.171)			TATTTTCTACCATAACTTTAA	0.383000													26	25					0	0	1	0	0
MSL1	339287	broad.mit.edu	37	17	38285607	38285607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:38285607C>T	uc002hub.2	+	3	518	c.499C>T	c.(499-501)CCC>TCC	p.P167S	MSL1_uc002hua.3_Missense_Mutation_p.P105S|MSL1_uc002huc.2_Missense_Mutation_p.P105S|MSL1_uc002hud.2_5'Flank	NM_001012241	NP_001012241	Q68DK7	MSL1_HUMAN	hampin	368					histone H4-K16 acetylation	MSL complex					0						TAAAGAGGAACCCTGTGGTTC	0.428000													27	54					0	0	1	0	0
TOP2A	7153	broad.mit.edu	37	17	38560420	38560420	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:38560420G>A	uc002huq.2	-	19	2393	c.2267C>T	c.(2266-2268)TCT>TTT	p.S756F		NM_001067	NP_001058	P11388	TOP2A_HUMAN	DNA topoisomerase II, alpha isozyme	756					apoptotic chromosome condensation|DNA ligation|DNA repair|DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|phosphatidylinositol-mediated signaling|positive regulation of apoptosis|positive regulation of retroviral genome replication|resolution of meiotic recombination intermediates|sister chromatid segregation	cytoplasm|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|drug binding|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity|ubiquitin binding			ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7		Breast(137;0.00328)	STAD - Stomach adenocarcinoma(5;0.00183)		Amsacrine(DB00276)|Ciprofloxacin(DB00537)|Dexrazoxane(DB00380)|Doxorubicin(DB00997)|Enoxacin(DB00467)|Epirubicin(DB00445)|Etoposide(DB00773)|Fleroxacin(DB04576)|Gatifloxacin(DB01044)|Idarubicin(DB01177)|Levofloxacin(DB01137)|Lomefloxacin(DB00978)|Lucanthone(DB04967)|Mitoxantrone(DB01204)|Moxifloxacin(DB00218)|Norfloxacin(DB01059)|Ofloxacin(DB01165)|Pefloxacin(DB00487)|Podofilox(DB01179)|Sparfloxacin(DB01208)|Teniposide(DB00444)|Trovafloxacin(DB00685)|Valrubicin(DB00385)	ATGATGATAAGAAGACATTTC	0.338000													96	212					0	0	1	0	0
KRT26	353288	broad.mit.edu	37	17	38927433	38927434	+	Nonsense_Mutation	DNP	CT	TA	TA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:38927433_38927434CT>TA	uc002hvf.2	-	2	542_543	c.496_497AG>TA	c.(496-498)AGA>TAA	p.R166*		NM_181539	NP_853517	Q7Z3Y9	K1C26_HUMAN	keratin 26	166	Rod.|Coil 1B.					intermediate filament	structural molecule activity				0		Breast(137;0.00526)				AGCGGTCAGTCTGGCATTGTCA	0.307000													16	52					0	0	1	0	0
KRTAP3-1	83896	broad.mit.edu	37	17	39165195	39165195	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:39165195C>T	uc002hvt.1	-	1	172	c.132G>A	c.(130-132)CAG>CAA	p.Q44Q		NM_031958	NP_114164	Q9BYR8	KRA31_HUMAN	keratin associated protein 3.1	44	4 X 5 AA repeats of C-C-X(3).					keratin filament	structural molecule activity				0		Breast(137;0.00043)				AGCAGATGGGCTGAAGGAGGC	0.597000													37	22					0	0	1	0	0
KRT13	3860	broad.mit.edu	37	17	39659586	39659586	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:39659586C>T	uc002hwu.1	-	3	751	c.688G>A	c.(688-690)GAG>AAG	p.E230K	KRT13_uc002hwv.1_Missense_Mutation_p.E230K|KRT13_uc002hww.2_Missense_Mutation_p.E123K|KRT13_uc010wfr.1_Missense_Mutation_p.E123K|KRT13_uc010cxo.2_Missense_Mutation_p.E230K|KRT13_uc002hwx.1_Missense_Mutation_p.E218K	NM_153490	NP_705694	P13646	K1C13_HUMAN	keratin 13 isoform a	230	Coil 1B.|Rod.				epidermis development	intermediate filament	structural molecule activity			ovary(2)|skin(2)|pancreas(1)	5		Breast(137;0.000286)				TTCAGGCTCTCGATCTGCATC	0.582000													62	155					0	0	1	0	0
KRT13	3860	broad.mit.edu	37	17	39659657	39659657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:39659657G>A	uc002hwu.1	-	3	680	c.617C>T	c.(616-618)GCC>GTC	p.A206V	KRT13_uc002hwv.1_Missense_Mutation_p.A206V|KRT13_uc002hww.2_Missense_Mutation_p.A99V|KRT13_uc010wfr.1_Missense_Mutation_p.A99V|KRT13_uc010cxo.2_Missense_Mutation_p.A206V|KRT13_uc002hwx.1_Missense_Mutation_p.A194V	NM_153490	NP_705694	P13646	K1C13_HUMAN	keratin 13 isoform a	206	Coil 1B.|Rod.				epidermis development	intermediate filament	structural molecule activity			ovary(2)|skin(2)|pancreas(1)	5		Breast(137;0.000286)				GTTGATGTCGGCCTCCACGCT	0.468000													35	83					0	0	1	0	0
KRT17	3872	broad.mit.edu	37	17	39777066	39777066	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:39777066G>A	uc002hxh.2	-	6	1147	c.1026C>T	c.(1024-1026)ATC>ATT	p.I342I	JUP_uc010wfs.1_Intron	NM_000422	NP_000413	Q04695	K1C17_HUMAN	keratin 17	342	Peptide epitope S4; induces T-cell and keratinocyte proliferation and IFN-gamma production.|Coil 2.|Rod.				epidermis development	cytoplasm|intermediate filament	protein binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2		Breast(137;0.000307)				TCAGCCCCTGGATCTGGGACA	0.607000									Steatocystoma_Multiplex				47	160					0	0	1	0	0
PTRF	284119	broad.mit.edu	37	17	40557273	40557273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:40557273G>A	uc002hzo.2	-	2	764	c.605C>T	c.(604-606)TCG>TTG	p.S202L	PTRF_uc010wgi.1_Missense_Mutation_p.S184L	NM_012232	NP_036364	Q6NZI2	PTRF_HUMAN	polymerase I and transcript release factor	202	Potential.				regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription initiation from RNA polymerase I promoter	caveola|cytosol|endoplasmic reticulum|microsome|mitochondrion|nucleoplasm	protein binding|rRNA primary transcript binding			breast(1)	1		all_cancers(22;0.00146)|Breast(137;0.00116)|all_epithelial(22;0.0134)		BRCA - Breast invasive adenocarcinoma(366;0.193)		CTCGTCCGACGAAAGCTCCAG	0.667000													169	190					0	0	1	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40844654	40844654	+	Nonsense_Mutation	SNP	C	T	T	rs144659252		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:40844654C>T	uc002iay.2	+	17	2884	c.2668C>T	c.(2668-2670)CGA>TGA	p.R890*	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	890	Laminin G-like 3.|Extracellular (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		GGCCCGGCTCCGAGTGGATCA	0.572000													111	127					0	0	1	0	0
WNK4	65266	broad.mit.edu	37	17	40937371	40937371	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:40937371G>A	uc002ibj.2	+	6	1368	c.1347G>A	c.(1345-1347)GAG>GAA	p.E449E	WNK4_uc010wgx.1_Silent_p.E113E|WNK4_uc002ibk.1_Silent_p.E221E|WNK4_uc010wgy.1_5'UTR	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	449					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		ACGACGGCGAGAAGCCGGGCC	0.597000													13	20					0	0	1	0	0
CCDC56	28958	broad.mit.edu	37	17	40948072	40948072	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:40948072G>A	uc010wgz.1	-	3	463	c.186C>T	c.(184-186)TCC>TCT	p.S62S	WNK4_uc002ibj.2_Intron|WNK4_uc010wgx.1_Intron|CNTD1_uc002ibm.3_5'Flank|CNTD1_uc010wha.1_5'Flank			Q9Y2R0	CCD56_HUMAN	SubName: Full=cDNA FLJ50764;	Error:Variant_position_missing_in_Q9Y2R0_after_alignment						integral to membrane					0		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0741)		GGAGGATGGAGGAGTGAGAGG	0.562000													96	128					0	0	1	0	0
MAP3K14	9020	broad.mit.edu	37	17	43343978	43343978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:43343978G>A	uc002iiw.1	-	15	2613	c.2504C>T	c.(2503-2505)GCC>GTC	p.A835V	LOC100133991_uc010dah.2_Intron|LOC100133991_uc002iit.3_Intron|LOC100133991_uc010dai.2_Intron|MAP3K14_uc002iiu.1_Missense_Mutation_p.A365V|MAP3K14_uc010daj.1_RNA|MAP3K14_uc002iiv.1_Missense_Mutation_p.A419V	NM_003954	NP_003945	Q99558	M3K14_HUMAN	mitogen-activated protein kinase kinase kinase	835					cellular response to mechanical stimulus|I-kappaB kinase/NF-kappaB cascade|immune response|positive regulation of I-kappaB kinase/NF-kappaB cascade|T cell costimulation	cytosol	ATP binding|MAP kinase kinase kinase activity|NF-kappaB-inducing kinase activity|protein binding			central_nervous_system(3)|breast(2)|lung(1)|ovary(1)|stomach(1)	8						TCGAGCCTCGGCCTGGCTGCT	0.607000													79	110					0	0	1	0	0
C17orf57	124989	broad.mit.edu	37	17	45421618	45421618	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:45421618A>C	uc002iln.2	+	7	805	c.394A>C	c.(394-396)AAG>CAG	p.K132Q	ITGB3_uc010wkr.1_RNA|C17orf57_uc002ilm.2_Missense_Mutation_p.K132Q|C17orf57_uc002ill.1_5'UTR|C17orf57_uc010daz.1_Missense_Mutation_p.K132Q	NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	hypothetical protein LOC124989	132							calcium ion binding			breast(1)|central_nervous_system(1)|skin(1)	3						CAGCGTTCACAAGACTTCATC	0.393000													30	158					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	45560407	45560407	+	RNA	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:45560407G>A	uc002ilp.1	-	4		c.446C>T			uc002ilq.2_RNA					Homo sapiens cDNA clone IMAGE:5266250, containing frame-shift errors.																		GCTTTTTCAGGGAAGTCCTTT	0.343000													33	53					0	0	1	0	0
UBE2Z	65264	broad.mit.edu	37	17	46990249	46990249	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:46990249C>T	uc002ioi.2	+	3	543	c.444C>T	c.(442-444)TTC>TTT	p.F148F		NM_023079	NP_075567	Q9H832	UBE2Z_HUMAN	ubiquitin-conjugating enzyme E2Z	148					apoptosis	cytoplasm|nucleus	ATP binding|ubiquitin-protein ligase activity				0						GGGGTTTCTTCCTGTTCGTGT	0.488000													153	246					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48264888	48264888	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:48264888C>G	uc002iqm.2	-	46	3506	c.3380G>C	c.(3379-3381)GGT>GCT	p.G1127A		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	1127	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	ACCTTGTTCACCAGGAGAGCC	0.597000			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						14	89					0	0	1	0	0
SPAG9	9043	broad.mit.edu	37	17	49082620	49082620	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:49082620G>A	uc002itc.2	-	12	1638	c.1429C>T	c.(1429-1431)CGG>TGG	p.R477W	SPAG9_uc002itb.2_Missense_Mutation_p.R463W|SPAG9_uc002itd.2_Missense_Mutation_p.R463W|SPAG9_uc002itf.2_Missense_Mutation_p.R298W|SPAG9_uc002ita.2_Missense_Mutation_p.R320W|SPAG9_uc002ite.2_Missense_Mutation_p.R307W	NM_001130528	NP_001124000	O60271	JIP4_HUMAN	sperm associated antigen 9 isoform 1	477	Potential.				positive regulation of cell migration|positive regulation of muscle cell differentiation|retrograde transport, endosome to Golgi|spermatogenesis	acrosomal vesicle|integral to membrane|perinuclear region of cytoplasm				lung(4)|breast(1)	5			BRCA - Breast invasive adenocarcinoma(22;4.24e-07)			GCTTCTGCCCGAGCTCTAGTG	0.343000													22	25					0	0	1	0	0
MMD	23531	broad.mit.edu	37	17	53471726	53471726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:53471726C>T	uc002iui.2	-	7	971	c.686G>A	c.(685-687)CGA>CAA	p.R229Q		NM_012329	NP_036461	Q15546	PAQRB_HUMAN	monocyte to macrophage	229	Lumenal (Potential).				cytolysis	integral to plasma membrane|late endosome membrane|lysosomal membrane|membrane fraction	receptor activity				0						CGTAGGACTTCGGTAAAGGTA	0.463000													122	173					0	0	1	0	0
CUEDC1	404093	broad.mit.edu	37	17	55950091	55950091	+	Silent	SNP	G	A	A	rs148211596	byFrequency	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:55950091G>A	uc002ivd.1	-	5	1436	c.717C>T	c.(715-717)TTC>TTT	p.F239F	CUEDC1_uc002ive.1_Silent_p.F239F	NM_017949	NP_060419	Q9NWM3	CUED1_HUMAN	CUE domain-containing 1	239										skin(2)	2						CGTTCTGCAGGAAAAGCGCGA	0.637000													90	128					0	0	1	0	0
PTRH2	51651	broad.mit.edu	37	17	57774865	57774865	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:57774865G>A	uc002ixt.2	-	2	600	c.475C>T	c.(475-477)CTA>TTA	p.L159L	PTRH2_uc002ixs.2_RNA	NM_016077	NP_057161	Q9Y3E5	PTH2_HUMAN	Bcl-2 inhibitor of transcription precursor	159					apoptosis|translation	mitochondrion	aminoacyl-tRNA hydrolase activity				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					CCAATCCCTAGGACAGTTTGA	0.458000													39	50					0	0	1	0	0
TBX2	6909	broad.mit.edu	37	17	59485716	59485716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:59485716C>T	uc010wox.1	+	7	2269	c.1988C>T	c.(1987-1989)GCT>GTT	p.A663V	TBX2_uc002ize.2_3'UTR|TBX2_uc002izg.2_Missense_Mutation_p.A509V	NM_005994	NP_005985	Q13207	TBX2_HUMAN	T-box 2	663					cell aging|positive regulation of cell proliferation		sequence-specific DNA binding				0						CCCGAGCTGGCTCTCCGCAAA	0.677000													7	10					0	0	1	0	0
EFCAB3	146779	broad.mit.edu	37	17	60493444	60493444	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:60493444C>T	uc002izu.1	+	10	1149	c.1071C>T	c.(1069-1071)ATC>ATT	p.I357I	EFCAB3_uc010wpc.1_Silent_p.I409I	NM_173503	NP_775774	Q8N7B9	EFCB3_HUMAN	EF-hand calcium binding domain 3 isoform b	357							calcium ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(2;2.27e-11)			GGCAGAAGATCCGAGGGGATT	0.423000													24	78					0	0	1	0	0
ACE	1636	broad.mit.edu	37	17	61559941	61559941	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:61559941G>A	uc002jau.1	+	8	1255	c.1233G>A	c.(1231-1233)GGG>GGA	p.G411G	ACE_uc010wpi.1_Silent_p.G411G|ACE_uc010ddu.1_Silent_p.G228G|ACE_uc002jav.1_5'Flank|ACE_uc010ddv.1_5'Flank|ACE_uc010wpj.1_5'Flank|ACE_uc002jaw.1_5'Flank|ACE_uc010wpk.1_5'Flank	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	411	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	TGCGTCGGGGGGCCAACCCCG	0.607000													127	148					0	0	1	0	0
DDX42	11325	broad.mit.edu	37	17	61877874	61877874	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:61877874T>G	uc002jbu.2	+	7	775	c.518T>G	c.(517-519)GTT>GGT	p.V173G	DDX42_uc002jbv.2_Missense_Mutation_p.V173G|DDX42_uc002jbw.1_5'UTR	NM_007372	NP_031398	Q86XP3	DDX42_HUMAN	DEAD box polypeptide 42 protein	173					protein localization|regulation of anti-apoptosis	Cajal body|cytoplasm|nuclear speck	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)|large_intestine(1)	5						GCTGGTGTGGTTCAGGAGGAA	0.408000													55	75					0	0	1	0	0
FTSJ3	117246	broad.mit.edu	37	17	61897243	61897243	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:61897243G>A	uc002jbz.2	-	20	2541	c.2463C>T	c.(2461-2463)TTC>TTT	p.F821F	FTSJ3_uc002jca.2_Silent_p.F821F	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	821					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						CCACCACCTTGAAATGACCTC	0.527000													112	138					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62021184	62021184	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:62021184C>T	uc002jds.1	-	22	4016	c.3939G>A	c.(3937-3939)ACG>ACA	p.T1313T		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1313			T -> M (in PMC).		muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	TCTGTTCCTCCGTCATAAAGA	0.552000													20	53					0	0	1	0	0
ERN1	2081	broad.mit.edu	37	17	62149380	62149380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:62149380G>A	uc002jdz.2	-	6	552	c.439C>T	c.(439-441)CTC>TTC	p.L147F		NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	147	Lumenal (Potential).				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						GATGGGCAGAGACTATCTGCA	0.448000													11	7					0	0	1	0	0
PITPNC1	26207	broad.mit.edu	37	17	65688735	65688735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:65688735G>A	uc002jgc.2	+	9	1077	c.730G>A	c.(730-732)GCC>ACC	p.A244T	PITPNC1_uc002jgb.2_3'UTR	NM_012417	NP_036549	Q9UKF7	PITC1_HUMAN	phosphatidylinositol transfer protein,	244					signal transduction	cytoplasm	lipid binding|phosphatidylinositol transporter activity|protein binding			skin(1)	1	all_cancers(12;3.03e-10)		BRCA - Breast invasive adenocarcinoma(8;2.08e-08)|Colorectal(3;0.198)			CACTCAGGAAGCCACCAACAA	0.468000													73	110					0	0	1	0	0
ABCA10	10349	broad.mit.edu	37	17	67151177	67151177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:67151177G>A	uc010dfa.1	-	31	4556	c.3677C>T	c.(3676-3678)TCC>TTC	p.S1226F	ABCA10_uc010wqs.1_Missense_Mutation_p.S218F|ABCA10_uc010wqt.1_RNA	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	1226	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					AACACAAAAGGAAACATTTCT	0.289000													10	19					0	0	1	0	0
SSTR2	6752	broad.mit.edu	37	17	71165992	71165992	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:71165992G>A	uc002jje.2	+	2	894	c.534G>A	c.(532-534)ATG>ATA	p.M178I		NM_001050	NP_001041	P30874	SSR2_HUMAN	somatostatin receptor 2	178	Helical; Name=4; (Potential).				digestion|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	PDZ domain binding|somatostatin receptor activity				0			LUSC - Lung squamous cell carcinoma(166;0.197)			TGCCCATCATGATATATGCTG	0.572000													48	54					0	0	1	0	0
SDK2	54549	broad.mit.edu	37	17	71334792	71334793	+	Missense_Mutation	DNP	GT	AG	AG			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:71334792_71334793GT>AG	uc010dfm.2	-	45	6452_6453	c.6452_6453AC>CT	c.(6451-6453)TAC>TCT	p.Y2151S	SDK2_uc002jjt.3_Missense_Mutation_p.Y1291S	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	2151	Cytoplasmic (Potential).				cell adhesion	integral to membrane				ovary(2)	2						TGGGGGGACGGTAGAGGGTGCT	0.599000													20	20					0	0	1	0	0
SDK2	54549	broad.mit.edu	37	17	71395348	71395348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:71395348C>T	uc010dfm.2	-	22	3052	c.3052G>A	c.(3052-3054)GAT>AAT	p.D1018N	SDK2_uc002jjt.3_Missense_Mutation_p.D177N|SDK2_uc010dfn.2_Missense_Mutation_p.D697N	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1018	Fibronectin type-III 5.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						GTTTTCCCATCGTAGCCTGGC	0.652000													25	37					0	0	1	0	0
DNAI2	64446	broad.mit.edu	37	17	72308161	72308161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:72308161G>A	uc002jkf.2	+	12	1613	c.1514G>A	c.(1513-1515)CGG>CAG	p.R505Q	DNAI2_uc002jkg.2_RNA|DNAI2_uc010dfp.2_RNA|uc002jkh.1_5'Flank|DNAI2_uc002jki.2_RNA	NM_023036	NP_075462	Q9GZS0	DNAI2_HUMAN	dynein, axonemal, intermediate polypeptide 2	505					cilium assembly	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	microtubule motor activity			ovary(2)|central_nervous_system(1)	3						CGTGAGACCCGGCGAGAGAAG	0.662000									Kartagener_syndrome				34	61					0	0	1	0	0
RAB37	326624	broad.mit.edu	37	17	72736948	72736948	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:72736948C>T	uc002jlk.2	+	2	191	c.135C>T	c.(133-135)TTC>TTT	p.F45F	RAB37_uc002jlc.2_Intron|RAB37_uc010dfu.2_Intron|RAB37_uc002jld.2_Intron|RAB37_uc010wrb.1_Silent_p.F13F|RAB37_uc010wrc.1_Silent_p.F50F|RAB37_uc010wrd.1_Intron|RAB37_uc010wre.1_Intron|RAB37_uc002jll.3_RNA	NM_001006638	NP_001006639	Q96AX2	RAB37_HUMAN	RAB37, member RAS oncogene family isoform 2	45					protein transport|small GTPase mediated signal transduction	ER-Golgi intermediate compartment	GTP binding			ovary(1)	1						AAACATGTTTCCTGATCCAAT	0.572000													191	292					0	0	1	0	0
FDXR	2232	broad.mit.edu	37	17	72860302	72860302	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:72860302C>T	uc002jly.2	-	9	1057	c.970G>A	c.(970-972)GCA>ACA	p.A324T	FDXR_uc010wri.1_Missense_Mutation_p.A272T|FDXR_uc010wrj.1_Missense_Mutation_p.A322T|FDXR_uc002jlw.2_Missense_Mutation_p.A81T|FDXR_uc002jlx.2_Missense_Mutation_p.A330T|FDXR_uc002jmc.2_Missense_Mutation_p.A296T|FDXR_uc010wrk.1_Missense_Mutation_p.A355T|FDXR_uc010wrl.1_Missense_Mutation_p.A367T|FDXR_uc002jma.2_Missense_Mutation_p.A325T|FDXR_uc010wrm.1_Missense_Mutation_p.A284T|FDXR_uc002jlz.2_Missense_Mutation_p.A316T|FDXR_uc002jmb.2_RNA	NM_024417	NP_077728	P22570	ADRO_HUMAN	ferredoxin reductase isoform 1 precursor	324					cholesterol metabolic process|electron transport chain|steroid biosynthetic process|transport	mitochondrial matrix	ferredoxin-NADP+ reductase activity|protein binding				0	all_lung(278;0.172)|Lung NSC(278;0.207)					CGGACACCTGCTGCCCGCCGC	0.667000													43	48					0	0	1	0	0
USH1G	124590	broad.mit.edu	37	17	72915871	72915871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:72915871C>T	uc002jme.1	-	2	1243	c.1060G>A	c.(1060-1062)GAT>AAT	p.D354N	USH1G_uc010wro.1_Missense_Mutation_p.D251N	NM_173477	NP_775748	Q495M9	USH1G_HUMAN	Usher syndrome 1G protein	354					equilibrioception|photoreceptor cell maintenance|sensory perception of sound	actin cytoskeleton				skin(2)	2	all_lung(278;0.172)|Lung NSC(278;0.207)					AGGCTGTCATCGTCCAGGCTG	0.677000													90	114					0	0	1	0	0
LLGL2	3993	broad.mit.edu	37	17	73568065	73568065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:73568065G>A	uc002joh.2	+	19	2534	c.2380G>A	c.(2380-2382)GAA>AAA	p.E794K	LLGL2_uc002joi.2_Missense_Mutation_p.E794K|LLGL2_uc010dgg.1_Missense_Mutation_p.E794K|LLGL2_uc002joj.2_Missense_Mutation_p.E783K|LLGL2_uc010wsd.1_Missense_Mutation_p.E421K	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	794	WD 12.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			CGAGCCCCTCGAAGTGGCCCA	0.652000													32	62					0	0	1	0	0
RHBDF2	79651	broad.mit.edu	37	17	74475857	74475857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:74475857G>A	uc002jrq.1	-	4	610	c.317C>T	c.(316-318)CCT>CTT	p.P106L	RHBDF2_uc002jrp.1_Missense_Mutation_p.P77L|RHBDF2_uc002jrr.1_5'UTR|RHBDF2_uc010wtf.1_Missense_Mutation_p.P77L|RHBDF2_uc002jrs.1_Missense_Mutation_p.P77L	NM_024599	NP_078875	Q6PJF5	RHDF2_HUMAN	rhomboid, veinlet-like 6 isoform 1	106	Cytoplasmic (Potential).				negative regulation of protein secretion|protein transport|proteolysis	endoplasmic reticulum membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity				0						GCGGAAGCCAGGGCGCTTCTC	0.647000													27	34					0	0	1	0	0
TNRC6C	57690	broad.mit.edu	37	17	76083028	76083028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:76083028C>T	uc002jud.2	+	14	4256	c.3656C>T	c.(3655-3657)CCG>CTG	p.P1219L	TNRC6C_uc002juf.2_Missense_Mutation_p.P1216L	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	1219	Pro-rich.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			CCACCGCCACCGCCCCCGCCG	0.667000													37	57					0	0	1	0	0
USP36	57602	broad.mit.edu	37	17	76803431	76803431	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:76803431C>T	uc002jvz.1	-	14	2020	c.1695G>A	c.(1693-1695)GGG>GGA	p.G565G	USP36_uc002jwa.1_Silent_p.G565G|USP36_uc002jwb.1_Silent_p.G202G|USP36_uc002jwc.1_Silent_p.G265G	NM_025090	NP_079366	Q9P275	UBP36_HUMAN	ubiquitin specific peptidase 36	565					ubiquitin-dependent protein catabolic process	nucleolus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)|breast(1)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(99;0.000842)|OV - Ovarian serous cystadenocarcinoma(97;0.151)			GCCTTTGGCTCCCAGATCTGC	0.592000													42	41					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	78293183	78293183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:78293183C>T	uc002jyf.2	+	17	3238	c.3095C>T	c.(3094-3096)GCT>GTT	p.A1032V	uc002jyg.1_Intron	NM_020954	NP_066005			hypothetical protein LOC57714																		CAGCTAAGGGCTATGAAGCAC	0.572000													77	106					0	0	1	0	0
BAHCC1	57597	broad.mit.edu	37	17	79410078	79410078	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:79410078C>T	uc002kaf.2	+	3	1703	c.1703C>T	c.(1702-1704)TCC>TTC	p.S568F	BAHCC1_uc002kae.2_5'Flank	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	568							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			AAGCGCAAGTCCCTGGAGCTG	0.701000													43	73					0	0	1	0	0
NPLOC4	55666	broad.mit.edu	37	17	79536116	79536116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:79536116C>T	uc002kat.3	-	14	1557	c.1375G>A	c.(1375-1377)GAT>AAT	p.D459N	NPLOC4_uc002kau.3_Missense_Mutation_p.D459N|NPLOC4_uc010wur.1_Missense_Mutation_p.D298N|NPLOC4_uc010dic.2_5'Flank|NPLOC4_uc002kas.2_5'UTR	NM_017921	NP_060391	Q8TAT6	NPL4_HUMAN	nuclear protein localization 4	459					cellular membrane fusion|ER-associated protein catabolic process|Golgi organization	cytosol|endoplasmic reticulum|nuclear outer membrane-endoplasmic reticulum membrane network|nucleus	zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			TAAACTGGATCCTTGGGGAAA	0.423000													10	84					0	0	1	0	0
MAFG	4097	broad.mit.edu	37	17	79880485	79880485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:79880485G>A	uc002kcm.2	-	3	694	c.485C>T	c.(484-486)TCG>TTG	p.S162L	MAFG_uc002kcn.2_Missense_Mutation_p.S162L	NM_032711	NP_116100	O15525	MAFG_HUMAN	v-maf musculoaponeurotic fibrosarcoma oncogene	162					blood coagulation	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			kidney(1)	1	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.0165)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			GCGTCCCTACGATCGGGCATC	0.552000													17	19					0	0	1	0	0
ASPSCR1	79058	broad.mit.edu	37	17	79941490	79941490	+	Silent	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:79941490T>C	uc002kcx.2	+	3	316	c.219T>C	c.(217-219)AAT>AAC	p.N73N	ASPSCR1_uc002kcw.1_Silent_p.N73N|ASPSCR1_uc002kcy.2_Silent_p.N73N|ASPSCR1_uc002kcz.2_Silent_p.N73N|ASPSCR1_uc002kda.2_5'UTR|ASPSCR1_uc002kdb.1_5'UTR	NM_024083	NP_076988	Q9BZE9	ASPC1_HUMAN	alveolar soft part sarcoma chromosome region,	73							protein binding		ASPSCR1/TFE3(161)	soft_tissue(118)|kidney(43)|breast(1)	162	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			TGCCCAACAATGCCAAGCTGG	0.612000			T	TFE3	alveolar soft part sarcoma								13	62					0	0	1	0	0
C17orf101	79701	broad.mit.edu	37	17	80373289	80373289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:80373289G>A	uc002keu.1	-	2	390	c.289C>T	c.(289-291)CAC>TAC	p.H97Y	C17orf101_uc002ket.1_Missense_Mutation_p.H97Y|C17orf101_uc010dip.1_RNA|HEXDC_uc002kev.3_5'Flank|HEXDC_uc010diq.2_5'Flank	NM_024648	NP_078924	Q6PK18	CQ101_HUMAN	hypothetical protein LOC79701 isoform 1	97	Lumenal (Potential).					integral to membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)	1						AACCTGCGGTGACTGTCGTAG	0.587000													82	302					0	0	1	0	0
NARF	26502	broad.mit.edu	37	17	80422298	80422298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:80422298C>T	uc002kfg.3	+	3	384	c.244C>T	c.(244-246)CTT>TTT	p.L82F	NARF_uc002kff.3_Missense_Mutation_p.L23F|NARF_uc010wvo.1_Missense_Mutation_p.L82F|NARF_uc010wvp.1_5'UTR|NARF_uc010dit.2_Missense_Mutation_p.L82F|NARF_uc002kfj.3_Intron|NARF_uc002kfi.3_RNA|NARF_uc002kfh.3_Missense_Mutation_p.L82F|NARF_uc002kfk.2_RNA	NM_012336	NP_036468	Q9UHQ1	NARF_HUMAN	nuclear prelamin A recognition factor isoform a	82						lamin filament	lamin binding			skin(1)	1	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.0143)|BRCA - Breast invasive adenocarcinoma(99;0.0369)			CGTTCTGAACCTTAACAAGGT	0.542000													42	45					0	0	1	0	0
FN3KRP	79672	broad.mit.edu	37	17	80684907	80684907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:80684907C>T	uc002kfu.2	+	6	840	c.790C>T	c.(790-792)CAC>TAC	p.H264Y	FN3KRP_uc010wvr.1_Missense_Mutation_p.H214Y	NM_024619	NP_078895	Q9HA64	KT3K_HUMAN	fructosamine 3 kinase related protein	264							kinase activity				0	Breast(20;0.000523)|all_neural(118;0.0952)		BRCA - Breast invasive adenocarcinoma(99;0.0344)|OV - Ovarian serous cystadenocarcinoma(97;0.061)			CTCCGCCTACCACGGCAAAAT	0.507000													69	58					0	0	1	0	0
EMILIN2	84034	broad.mit.edu	37	18	2847860	2847860	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr18:2847860G>A	uc002kln.2	+	2	347	c.188G>A	c.(187-189)GGA>GAA	p.G63E		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	63	EMI.				cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		GTGCTGGAGGGAAGTGAGAGT	0.527000													34	66					0	0	1	0	0
CTAGE1	64693	broad.mit.edu	37	18	19996144	19996144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr18:19996144C>T	uc002ktv.1	-	1	1735	c.1631G>A	c.(1630-1632)GGA>GAA	p.G544E		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	544						integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					GCTTGATTCTCCTCTTTCTTT	0.547000													42	55					0	0	1	0	0
CTAGE1	64693	broad.mit.edu	37	18	19996503	19996503	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr18:19996503G>A	uc002ktv.1	-	1	1376	c.1272C>T	c.(1270-1272)CTC>CTT	p.L424L		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	424						integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					TTTTCTCATGGAGAATAATCT	0.368000													36	31					0	0	1	0	0
DSC3	1825	broad.mit.edu	37	18	28598151	28598151	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr18:28598151T>A	uc002kwj.3	-	9	1304	c.1149A>T	c.(1147-1149)TTA>TTT	p.L383F	DSC3_uc002kwi.3_Missense_Mutation_p.L383F	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	383	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			CAGTGTTAATTAAATCCTTAT	0.318000													11	39					0	0	1	0	0
DSC3	1825	broad.mit.edu	37	18	28598157	28598157	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr18:28598157C>T	uc002kwj.3	-	9	1298	c.1143G>A	c.(1141-1143)AAG>AAA	p.K381K	DSC3_uc002kwi.3_Silent_p.K381K	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	381	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			TAATTAAATCCTTATCTTCTA	0.303000													12	38					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28919905	28919905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr18:28919905G>A	uc002kwp.2	+	11	1816	c.1604G>A	c.(1603-1605)GGA>GAA	p.G535E		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	535	Extracellular (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			CCCGGAAACGGAGCCAAAGAT	0.413000													58	51					0	0	1	0	0
MOCOS	55034	broad.mit.edu	37	18	33800122	33800122	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr18:33800122C>T	uc002kzq.3	+	9	1925	c.1902C>T	c.(1900-1902)CTC>CTT	p.L634L		NM_017947	NP_060417	Q96EN8	MOCOS_HUMAN	molybdenum cofactor sulfurase	634					Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	lyase activity|Mo-molybdopterin cofactor sulfurase activity|molybdenum ion binding|pyridoxal phosphate binding			skin(1)	1					Pyridoxal Phosphate(DB00114)	AACCCCGGCTCTGCCTGATCC	0.532000													17	69					0	0	1	0	0
ST8SIA5	29906	broad.mit.edu	37	18	44268743	44268743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr18:44268743G>A	uc002lcj.1	-	4	1019	c.451C>T	c.(451-453)CCC>TCC	p.P151S	ST8SIA5_uc002lci.1_5'UTR|ST8SIA5_uc010xcy.1_Missense_Mutation_p.P187S|ST8SIA5_uc010xcz.1_Missense_Mutation_p.P120S	NM_013305	NP_037437	O15466	SIA8E_HUMAN	ST8 alpha-N-acetyl-neuraminide	151	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane				upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						AGCACCTTGGGAAACATGCGG	0.592000													58	139					0	0	1	0	0
CCDC68	80323	broad.mit.edu	37	18	52596091	52596091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr18:52596091C>T	uc002lfs.2	-	8	795	c.623G>A	c.(622-624)AGA>AAA	p.R208K	CCDC68_uc002lft.2_Missense_Mutation_p.R208K	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	208	Potential.									skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		AGACAGTTTTCTTTCTAGTAG	0.363000													6	20					0	0	1	0	0
FECH	2235	broad.mit.edu	37	18	55240527	55240527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr18:55240527G>A	uc002lgq.3	-	3	382	c.265C>T	c.(265-267)CTT>TTT	p.L89F	FECH_uc002lgp.3_Missense_Mutation_p.L95F|FECH_uc002lgr.3_5'UTR	NM_000140	NP_000131	P22830	HEMH_HUMAN	ferrochelatase isoform b precursor	89					generation of precursor metabolites and energy|heme biosynthetic process|protoporphyrinogen IX metabolic process|response to light stimulus	mitochondrial inner membrane|mitochondrial matrix	2 iron, 2 sulfur cluster binding|ferrochelatase activity|ferrous iron binding|protein binding			central_nervous_system(1)	1		Colorectal(73;0.227)				AGTCTCAGAAGGAAGTCGTGA	0.383000													28	45					0	0	1	0	0
MALT1	10892	broad.mit.edu	37	18	56390306	56390306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr18:56390306G>A	uc002lhm.1	+	10	1303	c.1045G>A	c.(1045-1047)GGA>AGA	p.G349R	MALT1_uc002lhn.1_Missense_Mutation_p.G338R	NM_006785	NP_006776	Q9UDY8	MALT1_HUMAN	mucosa associated lymphoid tissue lymphoma	349	Caspase-like.				activation of NF-kappaB-inducing kinase activity|anti-apoptosis|nuclear export|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of protein ubiquitination|positive regulation of T cell cytokine production|protein oligomerization|proteolysis|T cell receptor signaling pathway	CBM complex|cytosol|nucleus|perinuclear region of cytoplasm	cysteine-type endopeptidase activity|protein self-association|signal transducer activity|ubiquitin-protein ligase activity			ovary(2)|lung(1)|central_nervous_system(1)	4						CCTTTTGATAGGAAATATGAA	0.388000			T	BIRC3	MALT								12	22					0	0	1	0	0
KIAA1468	57614	broad.mit.edu	37	18	59931274	59931274	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr18:59931274C>T	uc002lil.2	+	17	2618	c.2403C>T	c.(2401-2403)ATC>ATT	p.I801I	KIAA1468_uc002lik.1_Silent_p.I801I|KIAA1468_uc010xel.1_Silent_p.I801I|KIAA1468_uc002lim.2_Silent_p.I445I	NM_020854	NP_065905	Q9P260	K1468_HUMAN	hypothetical protein LOC57614	801							binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)	6		Colorectal(73;0.186)				CCACTATTATCGGAAGTCGTG	0.438000													26	23					0	0	1	0	0
SERPINB2	5055	broad.mit.edu	37	18	61570432	61570432	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr18:61570432A>G	uc010xeu.1	+	9	1474	c.1141A>G	c.(1141-1143)ACT>GCT	p.T381A	SERPINB2_uc002ljo.2_Missense_Mutation_p.T381A|SERPINB2_uc010dqh.2_Missense_Mutation_p.T311A|SERPINB2_uc002ljp.1_Intron|SERPINB2_uc002ljq.1_Intron	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	381		Reactive bond.			anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	GACAGGGAGAACTGGACATGG	0.458000													17	46					0	0	1	0	0
SERPINB10	5273	broad.mit.edu	37	18	61585313	61585313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr18:61585313G>A	uc010xev.1	+	4	439	c.349G>A	c.(349-351)GAG>AAG	p.E117K	SERPINB10_uc010xew.1_Missense_Mutation_p.E117K	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	117						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				GATATATGGAGAGAAAACGTA	0.353000													12	33					0	0	1	0	0
CNDP2	55748	broad.mit.edu	37	18	72186208	72186208	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr18:72186208C>T	uc002llm.1	+	11	1397	c.1235C>T	c.(1234-1236)ACC>ATC	p.T412I	CNDP2_uc002lln.1_Missense_Mutation_p.T328I|CNDP2_uc010dqs.2_Intron	NM_018235	NP_060705	Q96KP4	CNDP2_HUMAN	CNDP dipeptidase 2	412						cytoplasm	carboxypeptidase activity|metal ion binding|metallopeptidase activity|protein binding|tripeptidase activity			ovary(2)|skin(1)	3		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.22)		CCAGACTTGACCAGGGAAGGC	0.557000													49	148					0	0	1	0	0
ODF3L2	284451	broad.mit.edu	37	19	474703	474703	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:474703G>A	uc002lor.2	-	1	281	c.45C>T	c.(43-45)GCC>GCT	p.A15A	ODF3L2_uc010drp.2_Silent_p.A15A	NM_182577	NP_872383	Q3SX64	OD3L2_HUMAN	outer dense fiber of sperm tails 3-like 2	15											0						GGCCAAGGGGGGCTGTGGCCA	0.711000													13	13					0	0	1	0	0
ABCA7	10347	broad.mit.edu	37	19	1046245	1046245	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:1046245C>A	uc002lqw.3	+	13	1693	c.1462C>A	c.(1462-1464)CCA>ACA	p.P488T	ABCA7_uc010dsb.1_Missense_Mutation_p.P350T	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	488	Extracellular (By similarity).				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGACCCTGGCCCAGCCGCGGA	0.637000													74	315					9.25274e-37	9.46921e-37	1	1	0
MUM1	84939	broad.mit.edu	37	19	1360579	1360579	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:1360579A>G	uc010xgm.1	+	4	728	c.659A>G	c.(658-660)AAC>AGC	p.N220S	MUM1_uc010dsi.2_Missense_Mutation_p.N152S|MUM1_uc002lrz.2_Missense_Mutation_p.N221S|MUM1_uc002lsb.2_Missense_Mutation_p.N152S|MUM1_uc002lsc.1_Missense_Mutation_p.N152S			Q2TAK8	MUM1_HUMAN	SubName: Full=MUM1 protein;	220					chromatin organization|DNA repair	nucleus	nucleosome binding|protein binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGGGAGGAAACTCAGCGCAG	0.572000													22	105					0	0	1	0	0
CSNK1G2	1455	broad.mit.edu	37	19	1979046	1979046	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:1979046G>A	uc002lul.3	+	7	1159	c.636G>A	c.(634-636)CTG>CTA	p.L212L	CSNK1G2_uc010dsu.2_Silent_p.L164L	NM_001319	NP_001310	P78368	KC1G2_HUMAN	casein kinase 1, gamma 2	212	Protein kinase.				sphingolipid metabolic process|Wnt receptor signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity			stomach(1)	1		Ovarian(11;2.11e-07)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACAAGAGCCTGACGGGCACGG	0.537000													28	83					0	0	1	0	0
ZNF554	115196	broad.mit.edu	37	19	2833848	2833848	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:2833848C>T	uc002lwm.2	+	5	813	c.615C>T	c.(613-615)TCC>TCT	p.S205S	ZNF554_uc002lwl.2_Silent_p.S154S	NM_001102651	NP_001096121	Q86TJ5	ZN554_HUMAN	zinc finger protein 554	205					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AAAAGGCATCCCTTCACGTAG	0.493000													34	138					0	0	1	0	0
NFIC	4782	broad.mit.edu	37	19	3381966	3381966	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:3381966T>G	uc010xhi.1	+	2	349	c.287T>G	c.(286-288)ATC>AGC	p.I96S	NFIC_uc002lxo.2_Missense_Mutation_p.I87S|NFIC_uc010xhh.1_Missense_Mutation_p.I87S|NFIC_uc002lxp.2_Missense_Mutation_p.I96S|NFIC_uc010xhj.1_Missense_Mutation_p.I96S|NFIC_uc002lxq.1_Missense_Mutation_p.I48S	NM_205843	NP_995315	P08651	NFIC_HUMAN	nuclear factor I/C isoform 2	96	CTF/NF-I.				DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.8e-05)|Epithelial(107;2.94e-108)|BRCA - Breast invasive adenocarcinoma(158;0.00154)|STAD - Stomach adenocarcinoma(1328;0.191)		GTGCTGAGCATCACCGGCAAG	0.682000													112	150					0	0	1	0	0
PIP5K1C	23396	broad.mit.edu	37	19	3639003	3639003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:3639003G>A	uc002lyj.1	-	16	1856	c.1799C>T	c.(1798-1800)TCC>TTC	p.S600F	PIP5K1C_uc010xhq.1_Missense_Mutation_p.S600F|PIP5K1C_uc010xhr.1_Missense_Mutation_p.S600F	NM_012398	NP_036530	O60331	PI51C_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	600					axon guidance	cytosol|plasma membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			stomach(2)|skin(2)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.95e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0026)|STAD - Stomach adenocarcinoma(1328;0.183)		ACCGGCCGGGGAAGCCTCCAC	0.687000													35	40					0	0	1	0	0
TJP3	27134	broad.mit.edu	37	19	3739121	3739121	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:3739121C>T	uc010xhv.1	+	12	1719	c.1719C>T	c.(1717-1719)CCC>CCT	p.P573P	TJP3_uc010xhs.1_Silent_p.P540P|TJP3_uc010xht.1_Silent_p.P504P|TJP3_uc010xhu.1_Silent_p.P549P|TJP3_uc010xhw.1_Silent_p.P559P	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	554	SH3.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		GCATCATTCCCAACCAGAGCA	0.617000													117	130					0	0	1	0	0
PIAS4	51588	broad.mit.edu	37	19	4024062	4024062	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:4024062G>A	uc002lzg.2	+	3	493	c.483G>A	c.(481-483)GAG>GAA	p.E161E		NM_015897	NP_056981	Q8N2W9	PIAS4_HUMAN	protein inhibitor of activated STAT, 4	161	PINIT.				positive regulation of protein sumoylation|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|PML body	DNA binding|SUMO ligase activity|ubiquitin protein ligase binding|zinc ion binding			pancreas(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		AGCTTCAGGAGAGCCCGTGCA	0.637000													37	150					0	0	1	0	0
SHD	56961	broad.mit.edu	37	19	4290474	4290474	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:4290474C>T	uc002lzw.2	+	6	2330	c.867C>T	c.(865-867)TTC>TTT	p.F289F	SHD_uc010dtu.2_Silent_p.F249F	NM_020209	NP_064594	Q96IW2	SHD_HUMAN	Src homology 2 domain containing transforming	289	SH2.										0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0337)|STAD - Stomach adenocarcinoma(1328;0.18)		ATCTGAAGTTCGCGCGGACCC	0.657000													101	150					0	0	1	0	0
HDGFRP2	84717	broad.mit.edu	37	19	4475575	4475576	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:4475575_4475576CC>TT	uc002mao.2	+	3	376_377	c.283_284CC>TT	c.(283-285)CCT>TTT	p.P95F	HDGFRP2_uc002map.2_Missense_Mutation_p.P95F|HDGFRP2_uc010dtz.1_RNA	NM_001001520	NP_001001520	Q7Z4V5	HDGR2_HUMAN	hepatoma-derived growth factor-related protein 2	95					transcription, DNA-dependent	nucleus	DNA binding|protein binding				0						CTACAGCGCCCCTCCGGTGAGT	0.485000													15	51					0	0	1	0	0
KDM4B	23030	broad.mit.edu	37	19	5144378	5144378	+	Silent	SNP	C	T	T	rs149127752		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:5144378C>T	uc002mbq.3	+	20	3082	c.2856C>T	c.(2854-2856)TTC>TTT	p.F952F	KDM4B_uc010xim.1_Silent_p.F986F|KDM4B_uc002mbr.3_Silent_p.F710F	NM_015015	NP_055830	O94953	KDM4B_HUMAN	jumonji domain containing 2B	952	Tudor 1.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			lung(1)	1						AAGTGAACTTCGACGATGGCT	0.637000													13	18					0	0	1	0	0
ZNF358	140467	broad.mit.edu	37	19	7584289	7584289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:7584289C>T	uc002mgn.2	+	2	331	c.161C>T	c.(160-162)CCG>CTG	p.P54L		NM_018083	NP_060553	Q9NW07	ZN358_HUMAN	zinc finger protein 358	54					embryonic forelimb morphogenesis|neural tube development|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						AACACTGTCCCGGAAGACGTG	0.612000													44	51					0	0	1	0	0
KANK3	256949	broad.mit.edu	37	19	8402739	8402739	+	Translation_Start_Site	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:8402739C>T	uc010dwa.2	-	2	40	c.-26G>A	c.(-28--24)GGGTG>GGATG			NM_198471	NP_940873	Q6NY19	KANK3_HUMAN	ankyrin repeat domain 47												0						GTCAGAGGCACCCTGCAAAAG	0.577000													41	69					0	0	1	0	0
ACTL9	284382	broad.mit.edu	37	19	8808333	8808333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:8808333C>T	uc002mkl.2	-	1	840	c.719G>A	c.(718-720)GGC>GAC	p.G240D		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	240						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						CAGGGGCAGGCCGGCCTGGAG	0.657000													62	73					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	8974052	8974052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:8974052G>A	uc002mkp.2	-	76	42823	c.42619C>T	c.(42619-42621)CAC>TAC	p.H14207Y	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.H1007Y|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTGACAATGTGGAAATTTATC	0.502000													12	26					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9000146	9000146	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:9000146C>T	uc002mkp.2	-	55	40814	c.40610_splice	c.e55+1	p.R13537_splice	MUC16_uc010dwi.2_Splice_Site|MUC16_uc010dwj.2_Splice_Site_p.R354_splice|MUC16_uc010xki.1_Splice_Site	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16						cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCAGTTCTCACCTGAGCAAGG	0.577000													67	76					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9049484	9049484	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:9049484G>A	uc002mkp.2	-	5	32351	c.32147C>T	c.(32146-32148)CCT>CTT	p.P10716L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10718	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCTGCCCCAGGACTGGTGGC	0.478000													203	241					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9058095	9058095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:9058095G>A	uc002mkp.2	-	3	29555	c.29351C>T	c.(29350-29352)CCA>CTA	p.P9784L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9786	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCTCAAATTTGGAGATGAACT	0.478000													39	38					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9060904	9060904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:9060904C>T	uc002mkp.2	-	3	26746	c.26542G>A	c.(26542-26544)GAA>AAA	p.E8848K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8850	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTAGTTTTTTCCACTGATGGG	0.512000													78	98					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9063559	9063559	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:9063559G>A	uc002mkp.2	-	3	24091	c.23887C>T	c.(23887-23889)CCC>TCC	p.P7963S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7965	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCCAGAAGGGGAGGGCTCATC	0.453000													23	23					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9067908	9067908	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:9067908G>A	uc002mkp.2	-	3	19742	c.19538C>T	c.(19537-19539)TCC>TTC	p.S6513F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6515	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGACAGAAGGGAAGAGGAAGA	0.473000													16	13					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9077809	9077809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:9077809C>T	uc002mkp.2	-	3	9841	c.9637G>A	c.(9637-9639)GAA>AAA	p.E3213K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3214	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGCTGGGTTCCTTGGAGCTC	0.478000													104	118					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9083035	9083035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:9083035G>A	uc002mkp.2	-	1	8984	c.8780C>T	c.(8779-8781)TCC>TTC	p.S2927F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2928	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGACAGTGAGGAAGATGCTGT	0.453000													25	27					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9091429	9091430	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:9091429_9091430GG>AA	uc002mkp.2	-	1	589_590	c.385_386CC>TT	c.(385-387)CCA>TTA	p.P129L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	129	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCTGGTCCTTGGGGAACTCAAT	0.500000													45	80					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10089263	10089263	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:10089263G>A	uc002mmq.1	-	41	3091	c.3005C>T	c.(3004-3006)CCC>CTC	p.P1002L		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1002	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GGCCCCCACGGGCCCTGGGGG	0.542000													17	30					0	0	1	0	0
YIPF2	78992	broad.mit.edu	37	19	11034639	11034639	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:11034639C>A	uc002mqb.2	-	7	645	c.521G>T	c.(520-522)TGG>TTG	p.W174L	YIPF2_uc002mqc.2_Missense_Mutation_p.W174L	NM_024029	NP_076934	Q9BWQ6	YIPF2_HUMAN	Yip1 domain family, member 2	174	Helical; (Potential).					integral to membrane|transport vesicle					0						GGGCACCAGCCACGCATAGCA	0.672000													18	28					4.35082e-09	4.39097e-09	1	1	0
ZNF442	79973	broad.mit.edu	37	19	12461038	12461038	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:12461038G>C	uc002mtr.1	-	6	1972	c.1361C>G	c.(1360-1362)ACT>AGT	p.T454S	ZNF442_uc010xmk.1_Missense_Mutation_p.T385S	NM_030824	NP_110451	Q9H7R0	ZN442_HUMAN	zinc finger protein 442	454	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(2)|breast(1)|kidney(1)	4						TCCAGTGTGAGTTGTTTCATG	0.388000													19	68					0	0	1	0	0
ZNF490	57474	broad.mit.edu	37	19	12691741	12691741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:12691741G>A	uc002mtz.2	-	5	1277	c.1148C>T	c.(1147-1149)ACT>ATT	p.T383I		NM_020714	NP_065765	Q9ULM2	ZN490_HUMAN	zinc finger protein 490	383	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCCAAAATGAGTTCTTTCGTG	0.413000													59	64					0	0	1	0	0
BEST2	54831	broad.mit.edu	37	19	12865573	12865573	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:12865573C>T	uc002mux.2	+	3	455	c.455C>T	c.(454-456)CCC>CTC	p.P152L		NM_017682	NP_060152	Q8NFU1	BEST2_HUMAN	vitelliform macular dystrophy 2-like 1	152	Cytoplasmic (Potential).				membrane depolarization|sensory perception of smell	chloride channel complex|cilium|plasma membrane	chloride channel activity			ovary(1)|pancreas(1)	2						AAGCGCTTCCCCACCATAGAC	0.687000													8	10					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13476136	13476136	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:13476136C>T	uc010dze.2	-	5	1015	c.779G>A	c.(778-780)GGG>GAG	p.G260E	CACNA1A_uc002mwy.3_Missense_Mutation_p.G260E	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	260	I.|Extracellular (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CCTACCTGTCCCCTCTTCAAA	0.458000													36	138					0	0	1	0	0
RFX1	5989	broad.mit.edu	37	19	14077499	14077499	+	Silent	SNP	G	A	A	rs145518949		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:14077499G>A	uc002mxv.2	-	13	2069	c.1797C>T	c.(1795-1797)GGC>GGT	p.G599G		NM_002918	NP_002909	P22670	RFX1_HUMAN	regulatory factor X1	599					immune response	nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			lung(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(19;6.67e-23)			CGGGCCCGACGCCCTCAGGCA	0.672000													5	184					0	0	1	0	0
CYP4F2	8529	broad.mit.edu	37	19	16006377	16006377	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:16006377G>A	uc002nbs.1	-	3	332	c.282C>T	c.(280-282)CCC>CCT	p.P94P	CYP4F2_uc010xot.1_5'UTR|CYP4F2_uc010xou.1_Intron	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	94					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						GGGGGGAGATGGGTCCCATCC	0.597000													199	261					0	0	1	0	0
CYP4F11	57834	broad.mit.edu	37	19	16045048	16045048	+	Silent	SNP	C	T	T	rs140733161		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:16045048C>T	uc002nbu.2	-	2	207	c.171G>A	c.(169-171)CAG>CAA	p.Q57Q	CYP4F11_uc010eab.1_Silent_p.Q57Q|CYP4F11_uc002nbt.2_Silent_p.Q57Q	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	57					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						AAAACCAGTTCTGTTTCGGGG	0.612000													53	76					0	0	1	0	0
HSH2D	84941	broad.mit.edu	37	19	16268289	16268289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:16268289G>A	uc002ndp.3	+	9	1274	c.743G>A	c.(742-744)GGA>GAA	p.G248E	HSH2D_uc002ndr.2_Silent_p.R191R|HSH2D_uc010ead.2_RNA	NM_032855	NP_116244	Q96JZ2	HSH2D_HUMAN	hematopoietic SH2 domain containing	248						cytoplasm|nucleus					0						CCTGGGACCGGAAAAGGCAGC	0.597000													46	142					0	0	1	0	0
CIB3	117286	broad.mit.edu	37	19	16275677	16275677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:16275677C>T	uc002nds.2	-	5	394	c.394G>A	c.(394-396)GTG>ATG	p.V132M	CIB3_uc010eae.2_Missense_Mutation_p.V71M|CIB3_uc010eaf.2_RNA|CIB3_uc010eag.2_Missense_Mutation_p.V83M	NM_054113	NP_473454	Q96Q77	CIB3_HUMAN	DNA-dependent protein kinase catalytic	132	EF-hand 2.						calcium ion binding			ovary(1)	1						AGTTTGGTCACCGTCTGCTCC	0.602000													90	142					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17036182	17036182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:17036182C>T	uc002nfb.2	-	26	3544	c.3512G>A	c.(3511-3513)GGG>GAG	p.G1171E		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1124						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CATGACGTCCCCTGGTGGGAA	0.562000													68	76					0	0	1	0	0
PDE4C	5143	broad.mit.edu	37	19	18331234	18331234	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:18331234C>T	uc010xqc.1	-	6	1167	c.687G>A	c.(685-687)GTG>GTA	p.V229V	PDE4C_uc002nik.3_Silent_p.V229V|PDE4C_uc002nil.3_Silent_p.V229V|PDE4C_uc002nif.3_5'UTR|PDE4C_uc002nig.3_Intron|PDE4C_uc002nih.3_Intron|PDE4C_uc010ebk.2_Silent_p.V123V|PDE4C_uc002nii.3_Silent_p.V197V|PDE4C_uc010ebl.2_5'UTR|PDE4C_uc010xqd.1_5'UTR|PDE4C_uc010ebm.1_RNA|PDE4C_uc002nim.1_Missense_Mutation_p.G213R	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	229					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	CCATCTCCCCCACCGAGTGCC	0.647000													56	91					0	0	1	0	0
KIAA1683	80726	broad.mit.edu	37	19	18377054	18377055	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:18377054_18377055GG>AA	uc002nin.2	-	3	1511_1512	c.1295_1296CC>TT	c.(1294-1296)TCC>TTT	p.S432F	KIAA1683_uc010ebn.2_Missense_Mutation_p.S432F|KIAA1683_uc010xqe.1_Missense_Mutation_p.S386F	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	432						mitochondrion				ovary(2)	2						AAGCCAGAAGGGAAACCTGAGG	0.609000													48	90					0	0	1	0	0
ARMC6	93436	broad.mit.edu	37	19	19165058	19165058	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:19165058G>A	uc002nld.2	+	6	1299	c.951G>A	c.(949-951)GGG>GGA	p.G317G	ARMC6_uc002nlc.2_Silent_p.G292G|ARMC6_uc010xql.1_Silent_p.G224G|ARMC6_uc002nle.2_Silent_p.G292G|ARMC6_uc010xqm.1_Silent_p.G317G	NM_033415	NP_219483	Q6NXE6	ARMC6_HUMAN	armadillo repeat containing 6	317	ARM 2.						protein binding				0			OV - Ovarian serous cystadenocarcinoma(5;5.66e-06)|Epithelial(12;0.000391)			TCGACCTCGGGGGCCTGAGCA	0.622000											OREG0025376	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	154					0	0	1	0	0
LOC284441	284441	broad.mit.edu	37	19	20369264	20369264	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:20369264G>A	uc002nov.2	+	1	808	c.57G>A	c.(55-57)ATG>ATA	p.M19I		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						ACTACCCTATGGAAAATGGCA	0.378000													51	189					0	0	1	0	0
LOC284441	284441	broad.mit.edu	37	19	20370222	20370222	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:20370222C>T	uc002nov.2	+	1	1766	c.1015C>T	c.(1015-1017)CGA>TGA	p.R339*		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						TGTGACTGTTCGATAAACTCC	0.413000													34	42					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22156771	22156771	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:22156771G>A	uc002nqp.2	-	4	1214	c.1065C>T	c.(1063-1065)ATC>ATT	p.I355I	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GTTTAGTAAGGATTGAGAACT	0.393000													18	43					0	0	1	0	0
ZNF257	113835	broad.mit.edu	37	19	22271759	22271759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:22271759G>A	uc010ecx.2	+	4	1376	c.1207G>A	c.(1207-1209)GAT>AAT	p.D403N	ZNF257_uc010ecy.2_Missense_Mutation_p.D371N	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	403	C2H2-type 9; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				CTACAAATGTGATGAATATTG	0.388000													11	9					0	0	1	0	0
ZNF676	163223	broad.mit.edu	37	19	22363477	22363477	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:22363477G>A	uc002nqs.1	-	3	1360	c.1042C>T	c.(1042-1044)CGA>TGA	p.R348*		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	348	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				ATTGAGGATCGATTAAAAGCT	0.413000													4	87					0	0	1	0	0
ZNF676	163223	broad.mit.edu	37	19	22363813	22363813	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:22363813G>A	uc002nqs.1	-	3	1024	c.706C>T	c.(706-708)CGA>TGA	p.R236*		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	236	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				ATTGAGGATCGATTAAAAGCT	0.363000													17	107					0	0	1	0	0
ZNF492	57615	broad.mit.edu	37	19	22847728	22847728	+	Silent	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:22847728A>G	uc002nqw.3	+	4	1501	c.1257A>G	c.(1255-1257)AAA>AAG	p.K419K		NM_020855	NP_065906	Q9P255	ZN492_HUMAN	zinc finger protein 492	419					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.0266)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00203)|Hepatocellular(1079;0.244)				CTGGAGAGAAACCCTACAAAT	0.373000													3	110					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22939770	22939770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:22939770C>T	uc010xrh.1	-	6	2561	c.2561G>A	c.(2560-2562)GGG>GAG	p.G854E		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TGGTTTCTCCCCAGTATGAAT	0.348000													23	31					0	0	1	0	0
ZNF91	7644	broad.mit.edu	37	19	23543655	23543655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:23543655G>A	uc002nre.2	-	4	2239	c.2126C>T	c.(2125-2127)GCT>GTT	p.A709V	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Missense_Mutation_p.A677V	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	709						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				TTTCTCTCCAGCATGTATTAT	0.323000													52	61					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	31038981	31038981	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:31038981C>T	uc002nsu.1	+	4	2593	c.2455C>T	c.(2455-2457)CAA>TAA	p.Q819*	ZNF536_uc010edd.1_Nonsense_Mutation_p.Q819*	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	819					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					ACCCCCAAATCAAGACCACAA	0.567000													69	108					0	0	1	0	0
PEPD	5184	broad.mit.edu	37	19	33980919	33980919	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:33980919G>A	uc002nur.3	-	6	621	c.486C>T	c.(484-486)TCC>TCT	p.S162S	PEPD_uc010xrr.1_Silent_p.S162S|PEPD_uc010xrs.1_Silent_p.S98S	NM_000285	NP_000276	P12955	PEPD_HUMAN	prolidase isoform 1	162					cellular amino acid metabolic process|collagen catabolic process|proteolysis		aminopeptidase activity|dipeptidase activity|manganese ion binding|metallocarboxypeptidase activity			ovary(2)	2	Esophageal squamous(110;0.137)					TGCCGTCAAAGGAGGCCTCCC	0.622000													17	32					0	0	1	0	0
FXYD5	53827	broad.mit.edu	37	19	35660481	35660481	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:35660481G>A	uc002nyg.1	+	9	586	c.500G>A	c.(499-501)AGG>AAG	p.R167K	FXYD5_uc002nyh.1_Missense_Mutation_p.R167K|FXYD5_uc002nyi.1_Missense_Mutation_p.R104K|FXYD5_uc002nyj.1_RNA	NM_014164	NP_054883	Q96DB9	FXYD5_HUMAN	FXYD domain-containing ion transport regulator 5	167	Cytoplasmic (Potential).				microvillus assembly|negative regulation of calcium-dependent cell-cell adhesion	integral to membrane	actin binding|cadherin binding|ion channel activity				0	all_lung(56;9.4e-09)|Lung NSC(56;1.4e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.75e-22)|OV - Ovarian serous cystadenocarcinoma(14;3.17e-20)|all cancers(14;7.07e-19)|LUSC - Lung squamous cell carcinoma(66;0.0221)			GGCAAGTGCAGGCAGCTGTCC	0.542000													47	61					0	0	1	0	0
MAG	4099	broad.mit.edu	37	19	35790527	35790527	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:35790527G>A	uc002nyy.1	+	5	635	c.486G>A	c.(484-486)CCG>CCA	p.P162P	MAG_uc002nyx.1_Silent_p.P162P|MAG_uc010eds.1_Silent_p.P137P|MAG_uc002nyz.1_Silent_p.P162P	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	162	Ig-like C2-type 1.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			GCATGGTGCCGGACAACTGCC	0.701000													21	37					0	0	1	0	0
MLL4	9757	broad.mit.edu	37	19	36211255	36211256	+	Missense_Mutation	DNP	TG	GT	GT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:36211255_36211256TG>GT	uc010eei.2	+	3	1006_1007	c.1006_1007TG>GT	c.(1006-1008)TGG>GTG	p.W336V		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	336					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGAGGAAAGTTGGCAGGATGTC	0.436000													17	13					0	0	1	0	0
KIRREL2	84063	broad.mit.edu	37	19	36351246	36351246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:36351246G>A	uc002ocb.3	+	6	933	c.721G>A	c.(721-723)GGA>AGA	p.G241R	KIRREL2_uc002obz.3_Missense_Mutation_p.G241R|KIRREL2_uc002oca.3_Missense_Mutation_p.G191R|KIRREL2_uc002occ.3_Missense_Mutation_p.G188R|KIRREL2_uc002ocd.3_Missense_Mutation_p.G238R	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	241	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGTGCAGGAGGGAGAGAAGGT	0.607000													51	89					0	0	1	0	0
TBCB	1155	broad.mit.edu	37	19	36616592	36616592	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:36616592G>A	uc002odg.1	+	6	1218	c.643G>A	c.(643-645)GAA>AAA	p.E215K	TBCB_uc002odh.1_Missense_Mutation_p.E196K	NM_001281	NP_001272	Q99426	TBCB_HUMAN	cytoskeleton associated protein 1	215	CAP-Gly.				'de novo' posttranslational protein folding|cell differentiation|nervous system development	cytoplasm|microtubule	protein binding				0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			ACGCTACTTCGAATGCCAGGC	0.572000													324	410					0	0	1	0	0
ZNF540	163255	broad.mit.edu	37	19	38102879	38102879	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:38102879A>C	uc002ogq.2	+	5	1030	c.698A>C	c.(697-699)CAT>CCT	p.H233P	ZNF540_uc002ogu.2_Missense_Mutation_p.H233P|ZNF540_uc010efq.2_Missense_Mutation_p.H201P	NM_152606	NP_689819	Q8NDQ6	ZN540_HUMAN	zinc finger protein 540	233	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CTTACTCTGCATCAGAGATTT	0.363000													17	35					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38937408	38937408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:38937408G>A	uc002oit.2	+	9	930	c.800G>A	c.(799-801)AGC>AAC	p.S267N	RYR1_uc002oiu.2_Missense_Mutation_p.S267N	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	267	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTGAGAATCAGGTAGGGCGGG	0.577000													27	100					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38974064	38974064	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:38974064G>A	uc002oit.2	+	33	4972	c.4842G>A	c.(4840-4842)GTG>GTA	p.V1614V	RYR1_uc002oiu.2_Silent_p.V1614V	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1614	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TCCTGCAGGTGGAGACGAGGC	0.697000													5	10					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39070657	39070657	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:39070657C>T	uc002oit.2	+	100	14530	c.14400C>T	c.(14398-14400)TCC>TCT	p.S4800S	RYR1_uc002oiu.2_Silent_p.S4795S	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4800	Helical; Name=M7; (Potential).				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TGGTGATGTCCCTCTTGGGAC	0.592000													162	205					0	0	1	0	0
MAP4K1	11184	broad.mit.edu	37	19	39086356	39086356	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:39086356C>T	uc002oix.1	-	28	2301	c.2193G>A	c.(2191-2193)CTG>CTA	p.L731L	MAP4K1_uc002oiw.1_Silent_p.L318L|MAP4K1_uc002oiy.1_Silent_p.L731L	NM_007181	NP_009112	Q92918	M4K1_HUMAN	mitogen-activated protein kinase kinase kinase	731	CNH.				activation of JUN kinase activity|peptidyl-serine phosphorylation		ATP binding|MAP kinase kinase kinase kinase activity|protein binding|small GTPase regulator activity			skin(4)|lung(3)|ovary(1)	8	all_cancers(60;6.42e-06)|Ovarian(47;0.103)		Lung(45;0.000751)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CCGGGGTCACCAGCTTCACAG	0.572000													24	27					0	0	1	0	0
IL28B	282617	broad.mit.edu	37	19	39734710	39734710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:39734710C>T	uc010xut.1	-	3	350	c.346G>A	c.(346-348)GGG>AGG	p.G116R	IL28B_uc010xuu.1_Missense_Mutation_p.G116R	NM_172139	NP_742151	Q8IZI9	IL28B_HUMAN	interleukin 28B	116					response to virus	extracellular space	cytokine activity				0	all_cancers(60;2.81e-07)|all_lung(34;7.81e-08)|Lung NSC(34;9.29e-08)|all_epithelial(25;3.9e-07)|Ovarian(47;0.0315)		Epithelial(26;1.55e-27)|all cancers(26;1.41e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			AAGACATCCCCCAGGGCTGGG	0.632000													115	111					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40366207	40366208	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:40366207_40366208CC>TT	uc002omp.3	-	30	14034_14035	c.14026_14027GG>AA	c.(14026-14028)GGC>AAC	p.G4676N		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4676	VWFD 11.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TGCCAGCGGGCCGTCGGTGGCG	0.703000													34	95					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40411976	40411976	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:40411976C>T	uc002omp.3	-	7	3660	c.3652G>A	c.(3652-3654)GAG>AAG	p.E1218K		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1218	Cys-rich.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			AGGCCGCCCTCCTGGCAGTGG	0.682000													44	66					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40424134	40424134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:40424134G>A	uc002omp.3	-	4	2077	c.2069C>T	c.(2068-2070)ACC>ATC	p.T690I		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	690	VWFD 1.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGGGTCCAGGGTGTCATGGCA	0.652000													182	204					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40433232	40433232	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:40433232T>G	uc002omp.3	-	2	1045	c.1037A>C	c.(1036-1038)TAT>TCT	p.Y346S		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	346	IgGFc-binding.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CTTGACCACATAGGCTGGGCA	0.582000													31	60					0	0	1	0	0
PLD3	23646	broad.mit.edu	37	19	40873681	40873681	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:40873681C>T	uc002onm.3	+	6	722	c.324C>T	c.(322-324)GCC>GCT	p.A108A	PLD3_uc002onj.3_Silent_p.A108A|PLD3_uc002onk.3_Silent_p.A108A|PLD3_uc002onl.3_Silent_p.A108A|PLD3_uc002onn.2_Silent_p.A108A|PLD3_uc002ono.2_3'UTR	NM_001031696	NP_001026866	Q8IV08	PLD3_HUMAN	phospholipase D3	108	Lumenal (Potential).				lipid catabolic process	endoplasmic reticulum membrane|integral to membrane	NAPE-specific phospholipase D activity|phospholipase D activity|protein binding			skin(2)|ovary(1)	3			Lung(22;0.000636)|LUSC - Lung squamous cell carcinoma(20;0.00248)			CCAGCCAGGCCTGGCTGGGCC	0.652000													26	41					0	0	1	0	0
PSG3	5671	broad.mit.edu	37	19	43237099	43237099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:43237099C>T	uc002oue.2	-	3	678	c.546G>A	c.(544-546)ATG>ATA	p.M182I	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.M204I	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	182	Ig-like C2-type 1.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TCTGACCATTCATCCACCACA	0.512000													163	204					0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43411785	43411785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:43411785C>T	uc002ovj.1	-	4	980	c.928G>A	c.(928-930)GAA>AAA	p.E310K	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.E317K|PSG6_uc002ovi.2_Missense_Mutation_p.E311K|PSG6_uc010xwk.1_Missense_Mutation_p.E150K|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_Missense_Mutation_p.E100K|PSG6_uc002ovf.1_Intron|PSG6_uc002ovg.1_Missense_Mutation_p.E310K	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	310	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TCCCGTATTTCACATTGATAG	0.507000													107	125					0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43414809	43414809	+	Missense_Mutation	SNP	A	G	G	rs140437421	byFrequency	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:43414809A>G	uc002ovj.1	-	3	681	c.629T>C	c.(628-630)ATT>ACT	p.I210T	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.I217T|PSG6_uc002ovi.2_Missense_Mutation_p.I211T|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_5'UTR|PSG6_uc002ovf.1_Missense_Mutation_p.I210T|PSG6_uc002ovg.1_Missense_Mutation_p.I210T	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	210	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				GGGTCCTGCAATATACTTTGT	0.493000													57	307					0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43420636	43420636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:43420636G>A	uc002ovj.1	-	2	120	c.68C>T	c.(67-69)TCA>TTA	p.S23L	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ovf.1_Missense_Mutation_p.S23L|PSG6_uc002ovg.1_Missense_Mutation_p.S23L	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	23					female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				GTTTAAAAGTGATGCTAGGAG	0.468000													110	135					0	0	1	0	0
PSG4	5672	broad.mit.edu	37	19	43698525	43698525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:43698525C>T	uc002ovy.2	-	5	1312	c.1210G>A	c.(1210-1212)GAA>AAA	p.E404K	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.E311K|PSG4_uc002ovz.2_Missense_Mutation_p.E311K	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	404	Ig-like C2-type 3.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				TTGGAGCTTTCCTTGCCAGTG	0.468000													193	248					0	0	1	0	0
PSG4	5672	broad.mit.edu	37	19	43699348	43699348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:43699348C>T	uc002ovy.2	-	4	889	c.787G>A	c.(787-789)GAA>AAA	p.E263K	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.E170K|PSG4_uc002ovz.2_Intron	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	263	Ig-like C2-type 2.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				CTCTTAGGTTCACAGGTGAAG	0.453000													185	208					0	0	1	0	0
ZNF404	342908	broad.mit.edu	37	19	44384217	44384217	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:44384217C>T	uc002oxs.3	-	1	81	c.72G>A	c.(70-72)CAG>CAA	p.Q24Q		NM_001033719	NP_001028891	Q494X3	ZN404_HUMAN	zinc finger protein 404	27	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				ACAAATCCCTCTGATCCGAGT	0.383000													27	142					0	0	1	0	0
CEACAM16	388551	broad.mit.edu	37	19	45211459	45211459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:45211459C>T	uc010xxd.1	+	6	1473	c.1267C>T	c.(1267-1269)CCC>TCC	p.P423S	CEACAM16_uc002ozq.2_Missense_Mutation_p.P482S	NM_001039213	NP_001034302	A7LI12	A7LI12_HUMAN	carcinoembryonic antigen-related cell adhesion	423										ovary(1)	1	Lung NSC(12;0.000698)|all_lung(12;0.002)	Prostate(69;0.0376)|Ovarian(192;0.231)				GCAGGTGGCCCGTGAGTGTGT	0.582000													5	12					0	0	1	0	0
ERCC1	2067	broad.mit.edu	37	19	45924575	45924575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:45924575G>A	uc002pbs.1	-	3	328	c.182C>T	c.(181-183)GCC>GTC	p.A61V	ERCC1_uc002pbt.1_Missense_Mutation_p.A61V|ERCC1_uc002pbu.1_Intron|ERCC1_uc002pbv.2_Missense_Mutation_p.A61V	NM_001983	NP_001974	P07992	ERCC1_HUMAN	excision repair cross-complementing 1 isofrom 2	61					mitotic recombination|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|response to oxidative stress|transcription-coupled nucleotide-excision repair	cytoplasm|nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair complex	damaged DNA binding|endonuclease activity|protein C-terminus binding|protein domain specific binding|single-stranded DNA binding			ovary(2)	2		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0247)		GGCATATTCGGCGTAGGTCTG	0.637000								NER					52	81					0	0	1	0	0
CCDC8	83987	broad.mit.edu	37	19	46914959	46914959	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:46914959T>C	uc002pep.2	-	1	1961	c.1109A>G	c.(1108-1110)GAG>GGG	p.E370G		NM_032040	NP_114429	Q9H0W5	CCDC8_HUMAN	coiled-coil domain containing 8	370						plasma membrane				ovary(3)	3				OV - Ovarian serous cystadenocarcinoma(262;4.66e-05)|all cancers(93;0.000582)|Epithelial(262;0.00428)|GBM - Glioblastoma multiforme(486;0.0421)		AGCTGGGGCCTCTGCCCTCTG	0.607000													5	374					0	0	1	0	0
GRLF1	2909	broad.mit.edu	37	19	47422232	47422233	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:47422232_47422233TG>AT	uc010ekv.2	+	1	300_301	c.300_301TG>AT	c.(298-303)ATTGAT>ATATAT	p.D101Y		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	101					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		CTGAATTTATTGATGATCAGAC	0.465000													90	119					0	0	1	0	0
C5AR1	728	broad.mit.edu	37	19	47823709	47823709	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:47823709C>T	uc002pgj.1	+	2	724	c.675C>T	c.(673-675)ATC>ATT	p.I225I		NM_001736	NP_001727	P21730	C5AR_HUMAN	complement component 5 receptor 1	225	Helical; Name=5; (Potential).				activation of MAPK activity|activation of phospholipase C activity|cellular defense response|elevation of cytosolic calcium ion concentration|immune response|sensory perception of chemical stimulus	integral to plasma membrane	C5a anaphylatoxin receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_cancers(25;2e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000267)|OV - Ovarian serous cystadenocarcinoma(262;0.000618)|Epithelial(262;0.0142)|GBM - Glioblastoma multiforme(486;0.0242)		ACACTTTCATCCTGCTCCGGA	0.612000													127	167					0	0	1	0	0
C5AR1	728	broad.mit.edu	37	19	47823716	47823716	+	Missense_Mutation	SNP	C	T	T	rs146163744		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:47823716C>T	uc002pgj.1	+	2	731	c.682C>T	c.(682-684)CGG>TGG	p.R228W		NM_001736	NP_001727	P21730	C5AR_HUMAN	complement component 5 receptor 1	228	Cytoplasmic (Potential).				activation of MAPK activity|activation of phospholipase C activity|cellular defense response|elevation of cytosolic calcium ion concentration|immune response|sensory perception of chemical stimulus	integral to plasma membrane	C5a anaphylatoxin receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_cancers(25;2e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000267)|OV - Ovarian serous cystadenocarcinoma(262;0.000618)|Epithelial(262;0.0142)|GBM - Glioblastoma multiforme(486;0.0242)		CATCCTGCTCCGGACGTGGAG	0.612000													116	137					0	0	1	0	0
CABP5	56344	broad.mit.edu	37	19	48542572	48542572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:48542572C>T	uc002phu.1	-	4	366	c.241G>A	c.(241-243)GGT>AGT	p.G81S		NM_019855	NP_062829	Q9NP86	CABP5_HUMAN	calcium binding protein 5	81	EF-hand 2.				signal transduction	cytoplasm	calcium ion binding			skin(1)	1		all_cancers(25;1.86e-08)|all_lung(116;1.14e-06)|all_epithelial(76;1.16e-06)|Lung NSC(112;2.54e-06)|all_neural(266;0.0138)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;4.09e-05)|all cancers(93;0.000322)|Epithelial(262;0.01)|GBM - Glioblastoma multiforme(486;0.058)		ACACGGCCACCCACTGAGGAA	0.537000													57	80					0	0	1	0	0
ZNF114	163071	broad.mit.edu	37	19	48789236	48789236	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:48789236C>A	uc002pil.1	+	6	852	c.355C>A	c.(355-357)CCT>ACT	p.P119T	ZNF114_uc010elv.1_Missense_Mutation_p.P119T|ZNF114_uc002pim.1_Missense_Mutation_p.P119T|ZNF114_uc002pin.2_Missense_Mutation_p.P85T	NM_153608	NP_705836	Q8NC26	ZN114_HUMAN	zinc finger protein 114	119					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_epithelial(76;8.01e-05)|all_lung(116;0.000112)|Lung NSC(112;0.000192)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;7.56e-05)|all cancers(93;0.000113)|Epithelial(262;0.00962)|GBM - Glioblastoma multiforme(486;0.0153)		AGATGAATCTCCTGTTAGCAT	0.463000													63	76					6.88731e-43	7.07683e-43	1	1	0
GRIN2D	2906	broad.mit.edu	37	19	48908545	48908545	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:48908545C>T	uc002pjc.3	+	3	1108	c.1020C>T	c.(1018-1020)TTC>TTT	p.F340F		NM_000836	NP_000827	O15399	NMDE4_HUMAN	N-methyl-D-aspartate receptor subunit 2D	340	Extracellular (Potential).					cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|protein binding			ovary(3)|breast(3)	6		all_epithelial(76;1.11e-06)|all_lung(116;5.79e-06)|Lung NSC(112;1.18e-05)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		all cancers(93;0.00014)|OV - Ovarian serous cystadenocarcinoma(262;0.000233)|Epithelial(262;0.0112)|GBM - Glioblastoma multiforme(486;0.0161)	L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Orphenadrine(DB01173)	ATTATGGTTTCCTTCCTGAGC	0.682000													21	21					0	0	1	0	0
RASIP1	54922	broad.mit.edu	37	19	49227692	49227692	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:49227692G>A	uc002pki.2	-	10	2643	c.2446C>T	c.(2446-2448)CTA>TTA	p.L816L	RASIP1_uc002pkh.2_Silent_p.L77L	NM_017805	NP_060275	Q5U651	RAIN_HUMAN	Ras-interacting protein 1	816	Dilute.				signal transduction	Golgi stack|perinuclear region of cytoplasm				pancreas(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.98e-05)|all cancers(93;0.000272)|Epithelial(262;0.0155)|GBM - Glioblastoma multiforme(486;0.0222)		GCTCCCTGTAGCCAGTCCAAG	0.567000													93	154					0	0	1	0	0
TULP2	7288	broad.mit.edu	37	19	49388759	49388759	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:49388759G>T	uc002pkz.2	-	9	1158	c.1007C>A	c.(1006-1008)TCC>TAC	p.S336Y		NM_003323	NP_003314	O00295	TULP2_HUMAN	tubby like protein 2	336					visual perception	cytoplasm|extracellular region		p.S336S(1)		ovary(1)|kidney(1)|skin(1)	3		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000259)|all cancers(93;0.000435)|Epithelial(262;0.0221)|GBM - Glioblastoma multiforme(486;0.0234)		AGGATCCAGGGAGATGAGGTA	0.517000													103	133					6.53543e-73	6.74242e-73	1	1	0
KCNA7	3743	broad.mit.edu	37	19	49573328	49573328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:49573328C>T	uc002pmg.2	-	2	1719	c.1363G>A	c.(1363-1365)GAA>AAA	p.E455K		NM_031886	NP_114092	Q96RP8	KCNA7_HUMAN	potassium voltage-gated channel, shaker-related	455						voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(1)	1		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_epithelial(76;3.83e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000397)|OV - Ovarian serous cystadenocarcinoma(262;0.000519)|GBM - Glioblastoma multiforme(486;0.00541)|Epithelial(262;0.0441)		CCTCACACTTCGGTGACCAGG	0.478000													120	151					0	0	1	0	0
TRPM4	54795	broad.mit.edu	37	19	49700100	49700100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:49700100C>T	uc002pmw.2	+	17	2686	c.2614C>T	c.(2614-2616)CTC>TTC	p.L872F	TRPM4_uc010emu.2_Intron|TRPM4_uc010yak.1_Missense_Mutation_p.L336F|TRPM4_uc002pmx.2_Missense_Mutation_p.L698F|TRPM4_uc010emv.2_Missense_Mutation_p.L757F|TRPM4_uc010yal.1_Missense_Mutation_p.L518F|TRPM4_uc002pmy.2_Missense_Mutation_p.L214F	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	872	Helical; (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		CCTAGTGGCTCTCACCTGCTT	0.716000													6	30					0	0	1	0	0
AP2A1	160	broad.mit.edu	37	19	50285961	50285961	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:50285961C>T	uc002ppn.2	+	4	664	c.453C>T	c.(451-453)ATC>ATT	p.I151I	AP2A1_uc010enj.1_Intron|AP2A1_uc002ppo.2_Silent_p.I151I	NM_014203	NP_055018	O95782	AP2A1_HUMAN	adaptor-related protein complex 2, alpha 1	151					axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|Golgi to endosome transport|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|clathrin coat of trans-Golgi network vesicle|cytosol	protein binding|protein transporter activity			ovary(2)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.0023)|GBM - Glioblastoma multiforme(134;0.0157)		CCGCTGACATCCCCCGCATCC	0.617000													26	22					0	0	1	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50462012	50462012	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:50462012G>A	uc010ybh.1	-	7	1342	c.1251C>T	c.(1249-1251)GAC>GAT	p.D417D	SIGLEC11_uc010ybi.1_Silent_p.D417D	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	417	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		GGACCCCGGGGTCTGAGGGCT	0.677000													122	143					0	0	1	0	0
KLK3	354	broad.mit.edu	37	19	51361825	51361825	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:51361825T>C	uc002pts.1	+	4	645	c.604T>C	c.(604-606)TGG>CGG	p.W202R	KLK3_uc010ycj.1_Missense_Mutation_p.W161R|KLK3_uc002ptr.1_Missense_Mutation_p.W159R|KLK3_uc010eof.1_RNA	NM_001030047	NP_001025218	P07288	KLK3_HUMAN	prostate specific antigen isoform 3	202	Peptidase S1.				negative regulation of angiogenesis|proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00763)|GBM - Glioblastoma multiforme(134;0.0144)		TGCTGGACGCTGGACAGGGGG	0.522000													95	112					0	0	1	0	0
SIGLEC14	100049587	broad.mit.edu	37	19	52147175	52147175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:52147175C>T	uc002pxf.3	-	5	989	c.869G>A	c.(868-870)GGA>GAA	p.G290E		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	290	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		GAGGGCTTTTCCCTCCCGGAA	0.597000													45	65					0	0	1	0	0
ZNF577	84765	broad.mit.edu	37	19	52376715	52376715	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:52376715A>C	uc010yde.1	-	7	919	c.528T>G	c.(526-528)CAT>CAG	p.H176Q	ZNF577_uc010ydd.1_Intron|ZNF577_uc002pxx.3_Missense_Mutation_p.H117Q|ZNF577_uc002pxv.2_Missense_Mutation_p.H169Q|ZNF577_uc002pxw.2_Missense_Mutation_p.H110Q	NM_032679	NP_116068	Q9BSK1	ZN577_HUMAN	zinc finger protein 577 isoform a	176	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		CAGTTCTCTGATGTTGAATAA	0.463000													4	139					0	0	1	0	0
ZNF432	9668	broad.mit.edu	37	19	52538277	52538277	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:52538277G>A	uc002pyk.2	-	5	973	c.655C>T	c.(655-657)CAG>TAG	p.Q219*		NM_014650	NP_055465	O94892	ZN432_HUMAN	zinc finger protein 432	219	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|pancreas(1)	3		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.0054)|OV - Ovarian serous cystadenocarcinoma(262;0.0182)		TCAGTGAGCTGAGACTTCTTG	0.398000													61	83					0	0	1	0	0
ZNF480	147657	broad.mit.edu	37	19	52825826	52825827	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:52825826_52825827CC>GT	uc010ydl.1	+	5	1393_1394	c.1323_1324CC>GT	c.(1321-1326)GGCCTT>GGGTTT	p.L442F	ZNF480_uc002pyv.2_Missense_Mutation_p.L365F|ZNF480_uc010ydm.1_Missense_Mutation_p.L399F|ZNF480_uc010epn.2_Missense_Mutation_p.L273F|uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	442	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		AGTATTCAGGCCTTTCAGCCCA	0.391000													63	105					0	0	1	0	0
ZNF534	147658	broad.mit.edu	37	19	52941539	52941539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:52941539G>A	uc002pzk.2	+	4	926	c.865G>A	c.(865-867)GGG>AGG	p.G289R	ZNF534_uc002pzj.1_Intron|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Missense_Mutation_p.G276R	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	289	C2H2-type 4; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CAAAGAATGTGGGAAAGTCTT	0.373000													15	19					0	0	1	0	0
ZNF600	162966	broad.mit.edu	37	19	53270527	53270527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:53270527G>A	uc002qab.3	-	3	768	c.482C>T	c.(481-483)TCT>TTT	p.S161F		NM_198457	NP_940859	Q6ZNG1	ZN600_HUMAN	zinc finger protein 600	161					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0241)|GBM - Glioblastoma multiforme(134;0.0404)		ACATTGGAAAGATTTTTCTCT	0.368000													64	88					0	0	1	0	0
ZNF28	7576	broad.mit.edu	37	19	53304559	53304559	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:53304559A>G	uc002qad.2	-	4	659	c.539T>C	c.(538-540)ATT>ACT	p.I180T	ZNF28_uc002qac.2_Missense_Mutation_p.I127T|ZNF28_uc010eqe.2_Missense_Mutation_p.I126T	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	180					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		CCTACAACAAATTCTTTGGGA	0.368000													48	170					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54314540	54314540	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:54314540G>A	uc002qch.3	-	3	593	c.373C>T	c.(373-375)CCC>TCC	p.P125S	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.P125S|NLRP12_uc002qcj.3_Missense_Mutation_p.P125S|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.P125S	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	125					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		GTTTCCTGGGGATCTAGGGGA	0.512000													102	134					0	0	1	0	0
LILRA3	11026	broad.mit.edu	37	19	54804141	54804141	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:54804141G>A	uc002qfd.2	-	1	98	c.33C>T	c.(31-33)CTC>CTT	p.L11L	LILRA6_uc002qew.1_Silent_p.L11L|LILRA3_uc010erk.2_Silent_p.L11L	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	11					defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		AAATCTCACCGAGACAGATCA	0.587000													101	89					0	0	1	0	0
LILRP2	79166	broad.mit.edu	37	19	55221496	55221496	+	RNA	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:55221496C>T	uc002qgs.1	+	1		c.1896C>T			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						GCCGGCAGCCCCAGGCTGGGC	0.617000													35	44					0	0	1	0	0
LILRP2	79166	broad.mit.edu	37	19	55224500	55224500	+	RNA	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:55224500C>T	uc002qgs.1	+	1		c.4900C>T			LILRP2_uc002qgt.1_Intron	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						GGGTCAGGTCCTGTGAAGGGG	0.597000													22	15					0	0	1	0	0
PPP1R12C	54776	broad.mit.edu	37	19	55607648	55607648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:55607648G>A	uc002qix.2	-	7	1023	c.1007C>T	c.(1006-1008)TCT>TTT	p.S336F	PPP1R12C_uc010yfs.1_Missense_Mutation_p.S262F|PPP1R12C_uc002qiy.2_Missense_Mutation_p.S336F	NM_017607	NP_060077	Q9BZL4	PP12C_HUMAN	protein phosphatase 1, regulatory subunit 12C	336						cytoplasm				ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0449)		TTTGCTGCTAGAGGGCGCTTG	0.652000													139	189					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56243965	56243965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:56243965G>A	uc002qly.2	-	2	1260	c.1232C>T	c.(1231-1233)TCC>TTC	p.S411F		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	411	NACHT.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		ATCCCCATGGGAAAATACAAA	0.498000													63	105					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56329301	56329301	+	Silent	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:56329301A>G	uc010ygf.1	-	4	951	c.240T>C	c.(238-240)GAT>GAC	p.D80D	NLRP11_uc002qmb.2_Intron|NLRP11_uc002qmc.2_Intron|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	80	DAPIN.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		TCCTACAAAGATCTTCCTTAC	0.458000													60	80					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56329306	56329306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:56329306C>T	uc010ygf.1	-	4	946	c.235G>A	c.(235-237)GAA>AAA	p.E79K	NLRP11_uc002qmb.2_Intron|NLRP11_uc002qmc.2_Intron|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	79	DAPIN.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		CAAAGATCTTCCTTACGCATC	0.458000													61	81					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56473497	56473497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:56473497G>A	uc002qmh.2	+	4	2178	c.2107G>A	c.(2107-2109)GAT>AAT	p.D703N	NLRP8_uc010etg.2_Missense_Mutation_p.D703N	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	703						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TGCAACGAATGATAAGCTGGA	0.512000													67	115					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57325976	57325976	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:57325976T>G	uc002qnu.2	-	7	4185	c.3834A>C	c.(3832-3834)GAA>GAC	p.E1278D	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.E1249D|PEG3_uc002qnv.2_Missense_Mutation_p.E1278D|PEG3_uc002qnw.2_Missense_Mutation_p.E1154D|PEG3_uc002qnx.2_Missense_Mutation_p.E1152D|PEG3_uc010etr.2_Missense_Mutation_p.E1278D	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1278					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		AGAGTCTCTCTTCGGTCTGAC	0.468000													27	43					0	0	1	0	0
ZIK1	284307	broad.mit.edu	37	19	58101723	58101723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:58101723C>T	uc002qpg.2	+	4	641	c.544C>T	c.(544-546)CTT>TTT	p.L182F	ZNF547_uc002qpm.3_Intron|ZIK1_uc002qph.2_Missense_Mutation_p.L127F|ZIK1_uc002qpi.2_Missense_Mutation_p.L169F|ZIK1_uc002qpj.2_Missense_Mutation_p.L79F	NM_001010879	NP_001010879	Q3SY52	ZIK1_HUMAN	zinc finger protein interacting with K protein	182					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CATGTTGCGGCTTCTGAGGTC	0.493000													49	65					0	0	1	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58565289	58565289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:58565289G>A	uc002qrc.1	+	6	1344	c.1097G>A	c.(1096-1098)GGA>GAA	p.G366E		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	366					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		CCCAGGGATGGAGCCCAGGGC	0.662000													23	28					0	0	1	0	0
SLC27A5	10998	broad.mit.edu	37	19	59010864	59010865	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:59010864_59010865GG>AA	uc002qtc.2	-	7	1771_1772	c.1661_1662CC>TT	c.(1660-1662)ACC>ATT	p.T554I	SLC27A5_uc002qtb.2_5'Flank	NM_012254	NP_036386	Q9Y2P5	S27A5_HUMAN	solute carrier family 27 (fatty acid	554	Cytoplasmic (Probable).				bile acid and bile salt transport|bile acid biosynthetic process|very long-chain fatty acid metabolic process	endoplasmic reticulum membrane|integral to membrane	ATP binding|cholate-CoA ligase activity|long-chain fatty acid-CoA ligase activity				0		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.181)		CGGACCGGAAGGTGTCCCCGAG	0.658000													31	41					0	0	1	0	0
CMPK2	129607	broad.mit.edu	37	2	6991588	6991588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:6991588G>A	uc002qyo.2	-	4	1328	c.1219C>T	c.(1219-1221)CGT>TGT	p.R407C	CMPK2_uc002qyn.1_RNA|CMPK2_uc010yis.1_Intron|CMPK2_uc010ewv.2_Missense_Mutation_p.R407C	NM_207315	NP_997198	Q5EBM0	CMPK2_HUMAN	UMP-CMP kinase 2 precursor	407	Potential.				dTDP biosynthetic process	mitochondrion	ATP binding|cytidylate kinase activity|thymidylate kinase activity|UMP kinase activity				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TACTTTTGACGAAACACACTG	0.542000													31	51					0	0	1	0	0
GRHL1	29841	broad.mit.edu	37	2	10104169	10104169	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:10104169C>T	uc002raa.2	+	6	1072	c.901C>T	c.(901-903)CGA>TGA	p.R301*	GRHL1_uc002rab.2_RNA|GRHL1_uc002rad.2_Nonsense_Mutation_p.R112*|GRHL1_uc010yjb.1_Nonsense_Mutation_p.R150*	NM_198182	NP_937825	Q9NZI5	GRHL1_HUMAN	grainyhead-like 1	301					cellular lipid metabolic process|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding			pancreas(1)|skin(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.246)		CAGCAAAGTTCGAGTAAGTTC	0.478000													28	58					0	0	1	0	0
CYS1	192668	broad.mit.edu	37	2	10198994	10198994	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:10198994C>T	uc002rag.2	-	3	651	c.463G>A	c.(463-465)GAG>AAG	p.E155K		NM_001037160	NP_001032237	Q717R9	CYS1_HUMAN	cystin 1	155						cilium axoneme					0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.166)|OV - Ovarian serous cystadenocarcinoma(76;0.227)		CGGCAGTACTCCCGCTCGATG	0.677000													14	16					0	0	1	0	0
PDIA6	10130	broad.mit.edu	37	2	10927439	10927439	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:10927439G>A	uc002rau.2	-	11	1263	c.1125C>T	c.(1123-1125)TCC>TCT	p.S375S	PDIA6_uc010yjg.1_Silent_p.S372S|PDIA6_uc002rav.2_Silent_p.S427S|PDIA6_uc010yjh.1_Silent_p.S380S|PDIA6_uc002raw.2_Silent_p.S423S	NM_005742	NP_005733	Q15084	PDIA6_HUMAN	protein disulfide isomerase A6 precursor	375					cell redox homeostasis|glycerol ether metabolic process|protein folding	endoplasmic reticulum lumen|ER-Golgi intermediate compartment|melanosome|plasma membrane	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.149)|OV - Ovarian serous cystadenocarcinoma(76;0.15)		GCTCACTGAAGGAGCCTTTTA	0.448000													60	89					0	0	1	0	0
KCNF1	3754	broad.mit.edu	37	2	11053059	11053059	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:11053059G>A	uc002rax.2	+	1	997	c.507G>A	c.(505-507)TGG>TGA	p.W169*		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	169	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		AGTGCGTCTGGAAGTTCCTGG	0.687000													33	28					0	0	1	0	0
SMC6	79677	broad.mit.edu	37	2	17898033	17898033	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:17898033C>G	uc002rco.2	-	14	1617	c.1321G>C	c.(1321-1323)GAC>CAC	p.D441H	SMC6_uc010exo.2_Missense_Mutation_p.D441H|SMC6_uc002rcn.2_Missense_Mutation_p.D441H|SMC6_uc002rcp.1_Missense_Mutation_p.D467H|SMC6_uc002rcq.2_Missense_Mutation_p.D467H|SMC6_uc002rcr.1_Missense_Mutation_p.D441H	NM_001142286	NP_001135758	Q96SB8	SMC6_HUMAN	SMC6 protein	441	Potential.				DNA recombination|DNA repair	chromosome|nucleus	ATP binding			breast(4)|upper_aerodigestive_tract(1)|kidney(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TCTTCTTTGTCCTTTTCTATG	0.299000													15	67					0	0	1	0	0
EPT1	85465	broad.mit.edu	37	2	26607985	26607985	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:26607985G>A	uc010ykz.1	+	8	1037	c.890G>A	c.(889-891)GGA>GAA	p.G297E	EPT1_uc010eyl.1_RNA	NM_033505	NP_277040	Q9C0D9	EPT1_HUMAN	selenoprotein I	297	Helical; (Potential).				phospholipid biosynthetic process	integral to membrane	ethanolaminephosphotransferase activity|metal ion binding				0						TTTATGGTTGGAACAGCTTTT	0.308000													11	3					0	0	1	0	0
C2orf39	92749	broad.mit.edu	37	2	26676319	26676320	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:26676319_26676320GG>AA	uc002rhg.2	+	14	1895_1896	c.1821_1822GG>AA	c.(1819-1824)AAGGAA>AAAAAA	p.E608K		NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749	608	Glu-rich.										0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					aaggggagaaggaagaagagga	0.347000													6	38					0	0	1	0	0
OTOF	9381	broad.mit.edu	37	2	26698339	26698339	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:26698339G>A	uc002rhk.2	-	25	3141	c.3014C>T	c.(3013-3015)CCC>CTC	p.P1005L	OTOF_uc010yla.1_5'Flank|OTOF_uc002rhh.2_Missense_Mutation_p.P258L|OTOF_uc002rhi.2_Missense_Mutation_p.P315L|OTOF_uc002rhj.2_Missense_Mutation_p.P258L	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1005	Cytoplasmic (Potential).|C2 3.				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GTCCCAGGTGGGACACAGGGT	0.557000													76	116					0	0	1	0	0
SLC5A6	8884	broad.mit.edu	37	2	27427751	27427751	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:27427751G>A	uc002rjd.2	-	8	1174	c.783C>T	c.(781-783)TTC>TTT	p.F261F	SLC5A6_uc010eyv.1_Silent_p.F261F	NM_021095	NP_066918	Q9Y289	SC5A6_HUMAN	solute carrier family 5 (sodium-dependent	261	Helical; (Potential).				biotin metabolic process|pantothenate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Biotin(DB00121)|Lipoic Acid(DB00166)	AGACACCCCCGAAGGCCAAGG	0.582000													51	93					0	0	1	0	0
GTF3C2	2976	broad.mit.edu	37	2	27549689	27549689	+	Silent	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:27549689G>T	uc002rjv.1	-	20	2952	c.2589C>A	c.(2587-2589)ATC>ATA	p.I863I	MPV17_uc002rjt.2_5'Flank|GTF3C2_uc010eyy.1_Silent_p.I318I|GTF3C2_uc002rju.1_Silent_p.I874I|GTF3C2_uc002rjw.1_Silent_p.I863I	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	863	WD 4.					transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGACAAAATGGATTCGAACCA	0.547000													67	80					4.05715e-38	4.15484e-38	1	1	0
RBKS	64080	broad.mit.edu	37	2	28113153	28113153	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:28113153C>T	uc002rlo.1	-	1	71	c.60G>A	c.(58-60)GTG>GTA	p.V20V	BRE_uc002rlp.1_5'Flank|BRE_uc002rlq.2_5'Flank|BRE_uc002rlr.2_5'Flank|BRE_uc002rls.2_5'Flank|BRE_uc002rlt.2_5'Flank|BRE_uc002rlu.2_5'Flank|RBKS_uc010ezi.1_5'UTR|RBKS_uc010ymg.1_Silent_p.V20V|LOC100302650_uc010ymh.1_RNA	NM_022128	NP_071411	Q9H477	RBSK_HUMAN	ribokinase	20					D-ribose metabolic process		ATP binding|ribokinase activity			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)					AGGAGCCCACCACTACCACCG	0.667000													54	69					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29543648	29543648	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:29543648G>A	uc002rmy.2	-	7	2422	c.1515C>T	c.(1513-1515)ACC>ACT	p.T505T		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	505	MAM 2.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CATCCTTTAGGGTCCTGACCT	0.547000			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				136	158					0	0	1	0	0
RASGRP3	25780	broad.mit.edu	37	2	33745679	33745679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:33745679C>T	uc002rox.2	+	7	923	c.296C>T	c.(295-297)ACT>ATT	p.T99I	RASGRP3_uc010ync.1_Missense_Mutation_p.T99I|RASGRP3_uc002roy.2_Missense_Mutation_p.T99I	NM_170672	NP_733772	Q8IV61	GRP3_HUMAN	RAS guanyl releasing protein 3 (calcium and	99	N-terminal Ras-GEF.				MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity|protein binding|Rap GTPase activator activity|signal transducer activity			lung(3)|ovary(1)|pancreas(1)	5	all_hematologic(175;0.115)					ATTCGTATGACTGAGGAATTT	0.423000													117	141					0	0	1	0	0
VIT	5212	broad.mit.edu	37	2	37032697	37032697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:37032697G>A	uc002rpl.2	+	14	1500	c.1279G>A	c.(1279-1281)GAG>AAG	p.E427K	VIT_uc002rpm.2_Missense_Mutation_p.E405K|VIT_uc010ezv.2_Missense_Mutation_p.E383K|VIT_uc010ezw.2_Missense_Mutation_p.E384K	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	412	VWFA 1.					proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				CAAAGTGGAGGAGGCTTCAAG	0.498000													53	129					0	0	1	0	0
STRN	6801	broad.mit.edu	37	2	37076662	37076662	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:37076662G>A	uc002rpn.2	-	18	2289	c.2280C>T	c.(2278-2280)TTC>TTT	p.F760F	STRN_uc010ezx.2_Silent_p.F723F	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	760	WD 6.				dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				TGGATGGGTGGAAAGCTACAT	0.398000													41	56					0	0	1	0	0
HEATR5B	54497	broad.mit.edu	37	2	37284583	37284583	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:37284583G>A	uc002rpp.1	-	15	2196	c.2100C>T	c.(2098-2100)TTC>TTT	p.F700F		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	700							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				CAGTCAAAGTGAATTCCGCTA	0.363000													17	36					0	0	1	0	0
DHX57	90957	broad.mit.edu	37	2	39088946	39088946	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:39088946G>A	uc002rrf.2	-	5	705	c.606C>T	c.(604-606)GTC>GTT	p.V202V	DHX57_uc002rre.2_5'UTR|DHX57_uc002rrg.2_Silent_p.V202V	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	202	UBA.						ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				ACATCCTCAGGACCGCTTGAC	0.433000													25	46					0	0	1	0	0
EML4	27436	broad.mit.edu	37	2	42488319	42488319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:42488319C>T	uc002rsi.2	+	4	659	c.397C>T	c.(397-399)CAT>TAT	p.H133Y	EML4_uc002rsh.3_Missense_Mutation_p.H133Y|EML4_uc010fap.2_Intron	NM_019063	NP_061936	Q9HC35	EMAL4_HUMAN	echinoderm microtubule associated protein like 4	133					microtubule-based process|mitosis	cytoplasm|microtubule	protein binding		EML4/ALK(246)	lung(246)|ovary(2)|central_nervous_system(1)|skin(1)	250						agaggaaTCTCATTCTAATGA	0.294000			T	ALK	NSCLC								33	41					0	0	1	0	0
OXER1	165140	broad.mit.edu	37	2	42991193	42991193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:42991193G>A	uc002rss.2	-	1	209	c.127C>T	c.(127-129)CAT>TAT	p.H43Y		NM_148962	NP_683765	Q8TDS5	OXER1_HUMAN	G-protein coupled receptor TG1019	43	Extracellular (Potential).				regulation of cAMP biosynthetic process	integral to membrane|plasma membrane	5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding|5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding|5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid binding|G-protein coupled receptor activity			breast(1)	1						CTCAGGTTATGAAGTTCCATG	0.338000													58	76					0	0	1	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43927366	43927367	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:43927366_43927367CT>TA	uc010yny.1	+	8	1352_1353	c.1269_1270CT>TA	c.(1267-1272)CTCTCT>CTTACT	p.S424T	PLEKHH2_uc002rte.3_Missense_Mutation_p.S424T|PLEKHH2_uc002rtf.3_Missense_Mutation_p.S423T	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	424						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CTAACTCACTCTCTGGAAAAGG	0.441000													65	123					0	0	1	0	0
LHCGR	3973	broad.mit.edu	37	2	48915030	48915030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:48915030G>A	uc002rwu.3	-	11	1976	c.1906C>T	c.(1906-1908)CTT>TTT	p.L636F	GTF2A1L_uc002rwt.2_Intron	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	636	Cytoplasmic (Potential).				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	CTCAGCAAAAGAAAGAAATCT	0.373000									Familial_Male-Limited_Precocious_Puberty				37	143					0	0	1	0	0
GTF2A1L	11036	broad.mit.edu	37	2	48960051	48960051	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:48960051C>T	uc002rwt.2	+	9	1415	c.1349C>T	c.(1348-1350)TCG>TTG	p.S450L	LHCGR_uc002rwu.3_Intron|LHCGR_uc002rwv.2_Intron	NM_172196	NP_751946	Q9UNN4	TF2AY_HUMAN	general transcription factor IIA, 1-like isoform	Error:Variant_position_missing_in_Q9UNN4_after_alignment					regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase II promoter	transcription factor TFIIA complex	DNA binding|transcription coactivator activity				0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AGAAGGACATCGTTTAACACC	0.244000													84	103					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	51255178	51255178	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:51255178G>A	uc010fbq.2	-	2	1711	c.234C>T	c.(232-234)TTC>TTT	p.F78F	NRXN1_uc002rxe.3_Silent_p.F78F|NRXN1_uc002rxd.1_Silent_p.F78F	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TCAGCTCCAGGAAGTCGCAGA	0.652000													15	18					0	0	1	0	0
PSME4	23198	broad.mit.edu	37	2	54101512	54101512	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:54101512C>T	uc002rxp.2	-	43	5120	c.5064G>A	c.(5062-5064)TGG>TGA	p.W1688*	PSME4_uc010yop.1_Nonsense_Mutation_p.W1574*|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Nonsense_Mutation_p.W1063*|PSME4_uc010fbv.1_Nonsense_Mutation_p.W832*|PSME4_uc010fbt.1_Intron	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	1688	HEAT 6.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			TTATAACCAGCCACCTGATAT	0.368000													46	59					0	0	1	0	0
SPTBN1	6711	broad.mit.edu	37	2	54856098	54856098	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:54856098C>T	uc002rxu.2	+	14	2076	c.1827C>T	c.(1825-1827)ATC>ATT	p.I609I	SPTBN1_uc002rxv.1_Silent_p.I609I|SPTBN1_uc002rxx.2_Silent_p.I596I	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	609	Spectrin 4.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			CCCAGGTGATCCGAGACCGCG	0.607000													115	135					0	0	1	0	0
BCL11A	53335	broad.mit.edu	37	2	60688274	60688275	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:60688274_60688275GG>AA	uc002sae.1	-	4	2000_2001	c.1772_1773CC>TT	c.(1771-1773)GCC>GTT	p.A591V	BCL11A_uc002sab.2_Missense_Mutation_p.A591V|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.A260V|BCL11A_uc010ypj.1_Missense_Mutation_p.A557V|BCL11A_uc002sad.1_Missense_Mutation_p.A439V|BCL11A_uc002saf.1_Missense_Mutation_p.A557V	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	591					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			CCGACTCGCCGGCCACCGAGTC	0.678000			T	IGH@	B-CLL								46	68					0	0	1	0	0
ETAA1	54465	broad.mit.edu	37	2	67631024	67631024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:67631024C>T	uc002sdz.1	+	5	1349	c.1210C>T	c.(1210-1212)CCT>TCT	p.P404S		NM_019002	NP_061875	Q9NY74	ETAA1_HUMAN	ETAA16 protein	404						cytoplasm|nucleus				ovary(3)|large_intestine(1)	4						TGAACTCTTTCCTTCTAAAAC	0.353000													40	54					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70919548	70919548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:70919548G>A	uc002sgz.2	-	7	1157	c.692C>T	c.(691-693)CCG>CTG	p.P231L	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.P231L|ADD2_uc002sha.2_Intron|ADD2_uc002sgx.2_Missense_Mutation_p.P231L|ADD2_uc010fdt.1_Missense_Mutation_p.P231L|ADD2_uc002shc.1_Missense_Mutation_p.P231L|ADD2_uc002shd.1_Intron|ADD2_uc010fdu.1_Missense_Mutation_p.P247L	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	231					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						TGCTGTGGCCGGTGTGTGCAG	0.587000													8	56					0	0	1	0	0
EXOC6B	23233	broad.mit.edu	37	2	72406574	72406574	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:72406574G>A	uc010fep.2	-	22	2464	c.2326C>T	c.(2326-2328)CGC>TGC	p.R776C		NM_015189	NP_056004	Q9Y2D4	EXC6B_HUMAN	SEC15-like 2	776					protein transport|vesicle docking involved in exocytosis	exocyst				central_nervous_system(2)	2						TTGTTCTTGCGGCTAGTATCC	0.483000													46	52					0	0	1	0	0
STAMBP	10617	broad.mit.edu	37	2	74077595	74077595	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:74077595C>T	uc002sjs.2	+	7	1010	c.960C>T	c.(958-960)TTC>TTT	p.F320F	STAMBP_uc002sjt.2_Silent_p.F320F|STAMBP_uc002sju.2_Silent_p.F320F|STAMBP_uc002sjv.2_Silent_p.F320F	NM_201647	NP_964010	O95630	STABP_HUMAN	STAM binding protein	320	MPN.				JAK-STAT cascade|positive regulation of cell proliferation	early endosome|membrane|nucleus	metal ion binding|metallopeptidase activity|protein binding			ovary(1)|lung(1)|breast(1)|pancreas(1)	4						AAGAACTTTTCCTCATACAGG	0.468000													42	56					0	0	1	0	0
SEMA4F	10505	broad.mit.edu	37	2	74902126	74902126	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:74902126C>T	uc002sna.1	+	9	1224	c.1113C>T	c.(1111-1113)GTC>GTT	p.V371V	SEMA4F_uc010ffq.1_Silent_p.V338V|SEMA4F_uc010ffr.1_5'UTR|SEMA4F_uc002snb.1_5'UTR|SEMA4F_uc002snc.1_Silent_p.V216V	NM_004263	NP_004254	O95754	SEM4F_HUMAN	semaphorin W precursor	371	Sema.|Extracellular (Potential).				cell-cell signaling	endoplasmic reticulum|integral to plasma membrane	receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GACTGCCTGTCGTGGACAATG	0.532000											OREG0014721	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	60	88					0	0	1	0	0
ELMOD3	84173	broad.mit.edu	37	2	85590219	85590219	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:85590219G>A	uc002spf.3	+	7	795	c.130_splice	c.e7-1	p.I44_splice	ELMOD3_uc010fgg.2_Intron|ELMOD3_uc002spg.3_Splice_Site_p.I44_splice|ELMOD3_uc002sph.3_Splice_Site_p.I44_splice|ELMOD3_uc010ysn.1_Splice_Site_p.I44_splice|ELMOD3_uc010yso.1_Splice_Site|ELMOD3_uc010ysp.1_Splice_Site	NM_001135021	NP_001128493	Q96FG2	ELMD3_HUMAN	ELMO/CED-12 domain containing 3 isoform b						phagocytosis	cytoskeleton				ovary(2)	2						TGCCTCTACAGATCTCAGAGT	0.507000													17	25					0	0	1	0	0
KDM3A	55818	broad.mit.edu	37	2	86693821	86693821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:86693821C>T	uc002sri.3	+	10	1661	c.1334C>T	c.(1333-1335)TCC>TTC	p.S445F	KDM3A_uc010ytj.1_Missense_Mutation_p.S445F|KDM3A_uc010ytk.1_Missense_Mutation_p.S393F	NM_018433	NP_060903	Q9Y4C1	KDM3A_HUMAN	jumonji domain containing 1A	445					androgen receptor signaling pathway|cell differentiation|formaldehyde biosynthetic process|histone H3-K9 demethylation|hormone-mediated signaling pathway|positive regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleus	androgen receptor binding|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	5						CATGCACCTTCCCCATCGGAT	0.448000													56	95					0	0	1	0	0
FLJ40330	645784	broad.mit.edu	37	2	89082392	89082392	+	RNA	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:89082392C>T	uc010fhf.2	+	4		c.420C>T			FLJ40330_uc010fhg.2_RNA|FLJ40330_uc010fhh.2_RNA					Homo sapiens mRNA; cDNA DKFZp434J1630 (from clone DKFZp434J1630).												0						GAGAAAGATTCTGTTTCGAAT	0.343000													22	32					0	0	1	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95497788	95497788	+	RNA	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:95497788C>T	uc010fhp.2	-	7		c.760G>A				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						TTTCCTTTTTCATGCGAAGGT	0.313000													111	137					0	0	1	0	0
FER1L5	90342	broad.mit.edu	37	2	97363851	97363851	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:97363851G>A	uc010fia.2	+	39	4395	c.4395G>A	c.(4393-4395)CAG>CAA	p.Q1465Q	FER1L5_uc002sws.3_Silent_p.Q183Q|FER1L5_uc010fib.1_RNA|FER1L5_uc002swt.3_Silent_p.Q183Q|FER1L5_uc010yus.1_Silent_p.Q182Q	NM_001113382	NP_001106853	A0AVI2	FR1L5_HUMAN	fer-1-like 5 isoform 2	1465						integral to membrane				ovary(1)	1						AACTCTACCAGGAGCAGCCCA	0.602000													12	24					0	0	1	0	0
ANKRD39	51239	broad.mit.edu	37	2	97519293	97519293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:97519293C>T	uc002sxd.3	-	3	285	c.253G>A	c.(253-255)GAA>AAA	p.E85K		NM_016466	NP_057550	Q53RE8	ANR39_HUMAN	ankyrin repeat domain 39	85	ANK 2.										0						GCTCCGCTTTCCAGCAGGAAC	0.612000													49	62					0	0	1	0	0
RGPD3	653489	broad.mit.edu	37	2	107032347	107032347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:107032347C>T	uc010ywi.1	-	21	5080	c.5023G>A	c.(5023-5025)GAA>AAA	p.E1675K		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1675					intracellular transport		binding			ovary(1)	1						GCCTCTATTTCCCGAAGCAGG	0.438000													95	109					0	0	1	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107450509	107450509	+	Missense_Mutation	SNP	G	A	A	rs138821621		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:107450509G>A	uc002tdq.2	-	3	1156	c.1037C>T	c.(1036-1038)TCG>TTG	p.S346L	ST6GAL2_uc002tdr.2_Missense_Mutation_p.S346L|ST6GAL2_uc002tds.3_Missense_Mutation_p.S346L	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	346	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						TCTTACCTGCGAATTAATGAT	0.393000													80	128					0	0	1	0	0
RGPD4	285190	broad.mit.edu	37	2	108455394	108455394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:108455394G>A	uc010ywk.1	+	4	461	c.379G>A	c.(379-381)GGA>AGA	p.G127R	RGPD4_uc002tdu.2_5'UTR	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	127					intracellular transport		binding			skin(2)	2						ACTTTTCCCAGGAAGTCCTGC	0.318000													105	126					0	0	1	0	0
SULT1C3	442038	broad.mit.edu	37	2	108868931	108868931	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:108868931C>T	uc010ywo.1	+	2	283	c.283C>T	c.(283-285)CCC>TCC	p.P95S		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	95						cytoplasm	alcohol sulfotransferase activity			skin(1)	1						ACTGAAATTTCCCCATAAAGA	0.398000													26	43					0	0	1	0	0
SULT1C2	6819	broad.mit.edu	37	2	108910146	108910146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:108910146G>A	uc002tdy.2	+	2	476	c.23G>A	c.(22-24)GGG>GAG	p.G8E	SULT1C2_uc010ywp.1_5'UTR|SULT1C2_uc002tdx.2_Missense_Mutation_p.G8E|SULT1C2_uc010ywq.1_Missense_Mutation_p.G8E	NM_001056	NP_001047	O00338	ST1C2_HUMAN	sulfotransferase family, cytosolic, 1C, member 1	8					3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine metabolic process|sulfation|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	sulfotransferase activity			ovary(1)	1						TCAGACCTGGGGAAACAGATA	0.448000													38	50					0	0	1	0	0
RANBP2	5903	broad.mit.edu	37	2	109367830	109367830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:109367830C>T	uc002tem.3	+	10	1510	c.1384C>T	c.(1384-1386)CAT>TAT	p.H462Y		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	462					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						ACAGCTTTTCCATCATTTGCC	0.368000													81	144					0	0	1	0	0
RANBP2	5903	broad.mit.edu	37	2	109381664	109381664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:109381664G>A	uc002tem.3	+	20	4795	c.4669G>A	c.(4669-4671)GAA>AAA	p.E1557K		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	1557	RanBP2-type 4.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						AGTGCGAAATGAAGCAAATGC	0.408000													104	139					0	0	1	0	0
SLC20A1	6574	broad.mit.edu	37	2	113416433	113416433	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:113416433C>T	uc002tib.2	+	7	1256	c.810C>T	c.(808-810)CCC>CCT	p.P270P	SLC20A1_uc002tic.1_Silent_p.P82P	NM_005415	NP_005406	Q8WUM9	S20A1_HUMAN	solute carrier family 20 (phosphate	270	Cytoplasmic (Potential).				phosphate metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to plasma membrane	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity			ovary(2)	2						CTGAAAGCCCCTTAATGGAAA	0.403000													37	49					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119735494	119735494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:119735494G>A	uc002tln.1	+	8	881	c.749G>A	c.(748-750)GGA>GAA	p.G250E	MARCO_uc010yyf.1_Missense_Mutation_p.G172E	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	250	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						GGAGAGAAAGGAGACCTGGGT	0.597000													5	11					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125671801	125671801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:125671801C>T	uc002tno.2	+	24	4221	c.3857C>T	c.(3856-3858)TCC>TTC	p.S1286F	CNTNAP5_uc010flu.2_Missense_Mutation_p.S1287F	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	1286	Cytoplasmic (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TTGGACAGTTCCTTCAGAAAT	0.428000													23	36					0	0	1	0	0
WDR33	55339	broad.mit.edu	37	2	128477219	128477219	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:128477219G>A	uc002tpg.1	-	16	2563	c.2380C>T	c.(2380-2382)CAG>TAG	p.Q794*		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	794					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		GCAGGACCCTGGTTCTCCCGG	0.607000													22	36					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131519695	131519695	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:131519695C>T	uc002trw.2	+	2	240	c.50C>T	c.(49-51)TCC>TTC	p.S17F	FAM123C_uc010fmv.2_Missense_Mutation_p.S17F|FAM123C_uc010fms.1_Missense_Mutation_p.S17F|FAM123C_uc010fmt.1_Missense_Mutation_p.S17F|FAM123C_uc010fmu.1_Missense_Mutation_p.S17F	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	17										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		CTGCAGGTTTCCCACGAGAAA	0.617000													14	42					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133539964	133539964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:133539964C>T	uc002ttp.2	-	14	4794	c.4420G>A	c.(4420-4422)GAA>AAA	p.E1474K	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1474							protein binding				0						ATGACCTTTTCTTCGATTGTG	0.507000													35	31					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135743399	135743399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:135743399C>T	uc002tue.1	-	7	3074	c.3043G>A	c.(3043-3045)GGC>AGC	p.G1015S	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.G902S|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.G743S|YSK4_uc002tui.3_Missense_Mutation_p.G1032S	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	1015							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		GTCTCTCTGCCCATTTCTTTT	0.264000													37	74					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135745329	135745329	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:135745329C>T	uc002tue.1	-	7	1144	c.1113G>A	c.(1111-1113)AAG>AAA	p.K371K	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Silent_p.K258K|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Silent_p.K99K|YSK4_uc002tui.3_Silent_p.K388K	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	371							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		AACTCTCATTCTTTCTTGATG	0.383000													25	34					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136570124	136570124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:136570124C>T	uc002tuu.1	-	7	2121	c.2110G>A	c.(2110-2112)GAT>AAT	p.D704N		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	704	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		CCAATGGTATCATAGCTAGGG	0.552000													66	71					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138373853	138373853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:138373853G>A	uc002tva.1	+	17	3445	c.3445G>A	c.(3445-3447)GAA>AAA	p.E1149K	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCTCCTGAATGAAAATTGCTT	0.453000													74	108					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	139045992	139045992	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:139045992C>T	uc010zbk.1	-	1	449	c.306G>A	c.(304-306)ACG>ACA	p.T102T						SubName: Full=cDNA, FLJ79100, highly similar to 14-3-3 protein epsilon (14-3-3E);																		AGTACCATTTCGTTTTATAAT	0.428000													37	40					0	0	1	0	0
KYNU	8942	broad.mit.edu	37	2	143798171	143798171	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:143798171A>C	uc002tvl.2	+	13	1346	c.1216A>C	c.(1216-1218)ACA>CCA	p.T406P	KYNU_uc010fnm.2_Missense_Mutation_p.T406P	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	406					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	GCTAACAATAACATTTTCTGT	0.413000													20	25					0	0	1	0	0
ARHGAP15	55843	broad.mit.edu	37	2	144244968	144244968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:144244968G>A	uc002tvm.3	+	9	881	c.730G>A	c.(730-732)GAT>AAT	p.D244N	ARHGAP15_uc002tvn.2_Missense_Mutation_p.D10N	NM_018460	NP_060930	Q53QZ3	RHG15_HUMAN	ARHGAP15	244					regulation of cell shape|small GTPase mediated signal transduction	cytosol|membrane	protein binding|Rac GTPase activator activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.151)		CAGTGCTTCCGATACAAGCGA	0.338000													52	61					0	0	1	0	0
RIF1	55183	broad.mit.edu	37	2	152322470	152322470	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:152322470C>T	uc002txm.2	+	30	6566	c.6436C>T	c.(6436-6438)CAA>TAA	p.Q2146*	RIF1_uc002txl.2_Nonsense_Mutation_p.Q2146*|RIF1_uc002txn.2_Nonsense_Mutation_p.Q2146*|RIF1_uc002txo.2_Nonsense_Mutation_p.Q2146*|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	2146	Interaction with condensed chromosomes in telophase.				cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		TGCATCTCCTCAAAAACTAAG	0.453000													38	46					0	0	1	0	0
GALNT13	114805	broad.mit.edu	37	2	155307003	155307003	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:155307003G>A	uc002tyr.3	+	13	2178	c.1611G>A	c.(1609-1611)CAG>CAA	p.Q537Q	GALNT13_uc002tyt.3_3'UTR|GALNT13_uc010fod.2_3'UTR|uc002tyu.1_Intron	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	537	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						CTACAATGCAGGACTGTAGTG	0.443000													23	24					0	0	1	0	0
TANC1	85461	broad.mit.edu	37	2	160086657	160086658	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:160086657_160086658CC>TT	uc002uag.2	+	27	4994_4995	c.4720_4721CC>TT	c.(4720-4722)CCT>TTT	p.P1574F	TANC1_uc010zcm.1_3'UTR|TANC1_uc010fon.2_Missense_Mutation_p.P418F	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1574						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						CGCTGCCACTCCTGCTGGGAGC	0.559000													75	50					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163302799	163302799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:163302799G>A	uc002uch.1	-	7	1495	c.1283C>T	c.(1282-1284)TCT>TTT	p.S428F	KCNH7_uc002uci.2_Missense_Mutation_p.S421F	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	428	Helical; Name=Segment S1; (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	GAAGGCTGCAGAGTAGGGAGT	0.428000													23	31					0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	166012313	166012313	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:166012313G>A	uc002ucx.2	-	10	1624	c.1132C>T	c.(1132-1134)CGA>TGA	p.R378*	SCN3A_uc002ucy.2_Nonsense_Mutation_p.R378*|SCN3A_uc002ucz.2_Nonsense_Mutation_p.R378*|SCN3A_uc002uda.1_Nonsense_Mutation_p.R247*|SCN3A_uc002udb.1_Nonsense_Mutation_p.R247*	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	378						voltage-gated sodium channel complex	voltage-gated sodium channel activity	p.R378*(1)		ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	GTCATGAGTCGAAATAGAGAC	0.413000													35	47					0	0	1	0	0
GALNT3	2591	broad.mit.edu	37	2	166626759	166626759	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:166626759T>A	uc010fph.1	-	2	839	c.452A>T	c.(451-453)AAT>ATT	p.N151I	GALNT3_uc010fpi.1_Missense_Mutation_p.N151I|GALNT3_uc002udi.2_Missense_Mutation_p.N151I	NM_004482	NP_004473	Q14435	GALT3_HUMAN	polypeptide N-acetylgalactosaminyltransferase 3	151	Lumenal (Potential).				protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	Golgi cisterna membrane|integral to membrane|membrane fraction|nucleus|perinuclear region of cytoplasm	calcium ion binding|manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			central_nervous_system(2)|ovary(1)	3						TGCGAAAGCATTAAAGCAGTG	0.403000													41	60					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170063677	170063677	+	Missense_Mutation	SNP	G	A	A	rs143884041	byFrequency	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:170063677G>A	uc002ues.2	-	39	6766	c.6553C>T	c.(6553-6555)CTT>TTT	p.L2185F		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2185	LDL-receptor class B 21.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GTGACTTTAAGAAGAACACGG	0.418000													49	69					0	0	1	0	0
SP5	389058	broad.mit.edu	37	2	171572829	171572829	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:171572829G>A	uc002uge.2	+	2	278	c.112G>A	c.(112-114)GCC>ACC	p.A38T	LOC440925_uc002ugd.2_5'Flank	NM_001003845	NP_001003845	Q6BEB4	SP5_HUMAN	Sp5 transcription factor	38					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATTGCTGGCCGCCACCTGTAG	0.612000													4	111					0	0	1	0	0
DYNC1I2	1781	broad.mit.edu	37	2	172582223	172582223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:172582223G>A	uc002uha.1	+	8	772	c.607G>A	c.(607-609)GCT>ACT	p.A203T	DYNC1I2_uc002uhc.2_Missense_Mutation_p.A177T|DYNC1I2_uc002uhb.1_Missense_Mutation_p.A177T|DYNC1I2_uc010zds.1_Missense_Mutation_p.A195T|DYNC1I2_uc002uhd.1_Missense_Mutation_p.A197T|DYNC1I2_uc002uhe.1_Missense_Mutation_p.A203T|DYNC1I2_uc002uhf.1_Missense_Mutation_p.A177T|DYNC1I2_uc010zdt.1_Missense_Mutation_p.A195T|DYNC1I2_uc002uhg.1_Missense_Mutation_p.A118T|DYNC1I2_uc010zdu.1_5'Flank	NM_001378	NP_001369	Q13409	DC1I2_HUMAN	dynein, cytoplasmic 1, intermediate chain 2	203					G2/M transition of mitotic cell cycle|interspecies interaction between organisms|microtubule-based movement|transport	centrosome|cytosol|dynein complex|microtubule|vesicle	microtubule motor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.198)			TGATAGTAAAGGTATCTTAAG	0.294000													3	9					0	0	1	0	0
SLC25A12	8604	broad.mit.edu	37	2	172644339	172644339	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:172644339G>A	uc002uhh.2	-	16	1793	c.1704C>T	c.(1702-1704)CTC>CTT	p.L568L	SLC25A12_uc010fqh.2_Silent_p.L461L	NM_003705	NP_003696	O75746	CMC1_HUMAN	solute carrier family 25, member 12	568	Solcar 3.				gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)		L-Aspartic Acid(DB00128)	CTTCTTCCCGGAGAATCTTCC	0.582000													39	67					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179395360	179395360	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179395360C>T	uc010zfg.1	-	307	98502	c.98278G>A	c.(98278-98280)GAA>AAA	p.E32760K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E26455K|TTN_uc010zfi.1_Missense_Mutation_p.E26388K|TTN_uc010zfj.1_Missense_Mutation_p.E26263K|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33687							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGCCCATTTTCCTTCAGTTTC	0.388000													33	31					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179439960	179439960	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179439960C>T	uc010zfg.1	-	275	63419	c.63195G>A	c.(63193-63195)CTG>CTA	p.L21065L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.L14760L|TTN_uc010zfi.1_Silent_p.L14693L|TTN_uc010zfj.1_Silent_p.L14568L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21992							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACGGAGATCCAGCTCTGGAA	0.507000													8	20					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179463960	179463960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179463960C>T	uc010zfg.1	-	239	49080	c.48856G>A	c.(48856-48858)GAA>AAA	p.E16286K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E9981K|TTN_uc010zfi.1_Missense_Mutation_p.E9914K|TTN_uc010zfj.1_Missense_Mutation_p.E9789K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17213							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATACATATTCATGGCCTTCT	0.428000													77	103					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179477040	179477040	+	Missense_Mutation	SNP	C	T	T	rs148018042	by1000genomes	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179477040C>T	uc010zfg.1	-	215	42732	c.42508G>A	c.(42508-42510)GAA>AAA	p.E14170K	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E7865K|TTN_uc010zfi.1_Missense_Mutation_p.E7798K|TTN_uc010zfj.1_Missense_Mutation_p.E7673K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15097							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTCAATTTCGGTGTAGTCG	0.453000													13	23					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179569693	179569693	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179569693C>T	uc010zfg.1	-	101	26097	c.25873G>A	c.(25873-25875)GAA>AAA	p.E8625K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E5286K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9552							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTCAATTTCCTGAGAAGAA	0.373000													47	58					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179579780	179579780	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179579780C>T	uc010zfg.1	-	87	22625	c.22401G>A	c.(22399-22401)GGG>GGA	p.G7467G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.G4128G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8394							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTGATATTCCCCAATGTCTG	0.453000													127	183					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179583579	179583579	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179583579C>T	uc010zfg.1	-	81	20840	c.20616G>A	c.(20614-20616)AGG>AGA	p.R6872R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.R3533R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7799							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCACCAGTTCCCTGCTGCCTT	0.488000													17	19					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179584535	179584535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179584535G>A	uc010zfg.1	-	79	20176	c.19952C>T	c.(19951-19953)CCC>CTC	p.P6651L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P3312L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7578							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATGGGTTCGGGCTTCTCTAT	0.398000													14	24					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179592888	179592888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179592888C>T	uc010zfg.1	-	64	16155	c.15931G>A	c.(15931-15933)GTG>ATG	p.V5311M	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.V1972M	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6238							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACATTTGACACTTTGCATGTG	0.378000													12	11					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179596191	179596191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179596191C>T	uc010zfg.1	-	56	13794	c.13570G>A	c.(13570-13572)GAT>AAT	p.D4524N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D1185N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5451							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGATTTCATCGCTGTCTTTT	0.483000													16	21					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179615354	179615354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179615354C>T	uc002unb.2	-	46	11997	c.11773G>A	c.(11773-11775)GAA>AAA	p.E3925K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.E3925D(1)		ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGTTTTCTTCCTTCTGTTCG	0.338000													8	14					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179615801	179615801	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179615801G>A	uc002unb.2	-	46	11550	c.11326C>T	c.(11326-11328)CTT>TTT	p.L3776F	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGATTAGAAAGGGCATGTGGA	0.353000													37	59					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179622629	179622629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179622629C>T	uc010zfi.1	-	44	10404	c.10180G>A	c.(10180-10182)GAA>AAA	p.E3394K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133432	NP_597676	Q8WZ42	TITIN_HUMAN	titin isoform novex-1	3464							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTATTTTCTTCAAATTTGCTA	0.388000													21	43					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179632510	179632510	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179632510G>A	uc010zfg.1	-	40	9671	c.9447C>T	c.(9445-9447)ATC>ATT	p.I3149I	TTN_uc010zfh.1_Silent_p.I3103I|TTN_uc010zfi.1_Silent_p.I3103I|TTN_uc010zfj.1_Silent_p.I3103I|TTN_uc002unb.2_Silent_p.I3149I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3149							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAATACTTCGGATGCGAACAT	0.403000													88	112					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179639138	179639138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179639138C>T	uc010zfg.1	-	30	7077	c.6853G>A	c.(6853-6855)GAA>AAA	p.E2285K	TTN_uc010zfh.1_Missense_Mutation_p.E2239K|TTN_uc010zfi.1_Missense_Mutation_p.E2239K|TTN_uc010zfj.1_Missense_Mutation_p.E2239K|TTN_uc002unb.2_Missense_Mutation_p.E2285K|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2285							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACTCTAATTCTCCTGAATAT	0.343000													22	45					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179654825	179654825	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179654825C>T	uc010zfg.1	-	12	2042	c.1818G>A	c.(1816-1818)AGG>AGA	p.R606R	TTN_uc010zfh.1_Silent_p.R560R|TTN_uc010zfi.1_Silent_p.R560R|TTN_uc010zfj.1_Silent_p.R560R|TTN_uc002unb.2_Silent_p.R606R|TTN_uc010frg.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	606							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAACTGTTTTCCTAGTTTCCT	0.313000													21	29					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179656878	179656878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:179656878G>A	uc010zfg.1	-	10	1807	c.1583C>T	c.(1582-1584)TCC>TTC	p.S528F	TTN_uc010zfh.1_Missense_Mutation_p.S528F|TTN_uc010zfi.1_Missense_Mutation_p.S528F|TTN_uc010zfj.1_Missense_Mutation_p.S528F|TTN_uc002unb.2_Missense_Mutation_p.S528F|TTN_uc010frg.1_Missense_Mutation_p.S202F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	528							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTAGCTGCGGAAATTACTAC	0.294000													13	22					0	0	1	0	0
ITGA4	3676	broad.mit.edu	37	2	182396419	182396419	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:182396419C>T	uc002unu.2	+	25	3463	c.2700C>T	c.(2698-2700)TTC>TTT	p.F900F	ITGA4_uc002unv.2_Silent_p.F145F	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	900	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	GTTTAAATTTCTTGTGTAATT	0.308000													37	50					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196659101	196659101	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:196659101C>T	uc002utj.3	-	57	10778	c.10677G>A	c.(10675-10677)CCG>CCA	p.P3559P	DNAH7_uc002uti.3_Silent_p.P42P	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3559	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GATCAGAGATCGGGTCCATGA	0.463000													72	90					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197183563	197183563	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:197183563C>A	uc002utm.1	-	9	2234	c.2051G>T	c.(2050-2052)TGT>TTT	p.C684F	HECW2_uc002utl.1_Missense_Mutation_p.C328F	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	684					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CTCTGCTGCACAGGCTCCGTC	0.602000													35	45					5.71845e-15	5.78648e-15	1	1	0
PLCL1	5334	broad.mit.edu	37	2	198949641	198949641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:198949641C>T	uc010fsp.2	+	2	1691	c.1400C>T	c.(1399-1401)TCC>TTC	p.S467F	PLCL1_uc002uuv.3_Missense_Mutation_p.S388F	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	467	PI-PLC X-box.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	ACCCATGTTTCCTTTCGAAGT	0.408000													8	30					0	0	1	0	0
FAM117B	150864	broad.mit.edu	37	2	203620270	203620270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:203620270C>T	uc010zhx.1	+	5	980	c.970C>T	c.(970-972)CCA>TCA	p.P324S		NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	324										ovary(1)	1						GGCTCCTGTTCCAAAGAGTGC	0.398000													55	98					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207173675	207173675	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:207173675G>A	uc002vbp.2	+	5	4673	c.4423G>A	c.(4423-4425)GAG>AAG	p.E1475K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1475							nucleic acid binding|zinc ion binding			ovary(3)	3						GTCTTACAAAGAGGCAGACCT	0.373000													4	7					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207173679	207173679	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:207173679C>G	uc002vbp.2	+	5	4677	c.4427C>G	c.(4426-4428)GCA>GGA	p.A1476G		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1476							nucleic acid binding|zinc ion binding			ovary(3)	3						TACAAAGAGGCAGACCTTCAG	0.373000													4	7					0	0	1	0	0
PLEKHM3	389072	broad.mit.edu	37	2	208693168	208693168	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:208693168G>A	uc002vcl.2	-	8	2651	c.2161C>T	c.(2161-2163)CCC>TCC	p.P721S		NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	721	Phorbol-ester/DAG-type.				intracellular signal transduction		metal ion binding			ovary(1)	1						CTCGGGCAGGGGACAGACTTT	0.502000													42	62					0	0	1	0	0
CRYGB	1419	broad.mit.edu	37	2	209007373	209007373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:209007373C>T	uc002vcp.3	-	3	550	c.517G>A	c.(517-519)GAT>AAT	p.D173N		NM_005210	NP_005201	P07316	CRGB_HUMAN	crystallin, gamma B	173					visual perception		structural constituent of eye lens				0				Epithelial(149;0.0641)|LUSC - Lung squamous cell carcinoma(261;0.0703)|Lung(261;0.132)		CAGTACAAATCCATGACTCGT	0.443000													64	85					0	0	1	0	0
IDH1	3417	broad.mit.edu	37	2	209116179	209116179	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:209116179G>A	uc002vcs.2	-	3	343	c.97C>T	c.(97-99)CCC>TCC	p.P33S	IDH1_uc002vct.2_Missense_Mutation_p.P33S|IDH1_uc002vcu.2_Missense_Mutation_p.P33S	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	33					2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity			central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		TCCACGTAGGGAAAAATGAGT	0.338000			Mis		gliobastoma 								28	59					0	0	1	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209141445	209141445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:209141445G>A	uc002vcz.2	+	4	490	c.332G>A	c.(331-333)AGG>AAG	p.R111K	PIKFYVE_uc010fun.1_5'UTR|PIKFYVE_uc002vcy.1_Missense_Mutation_p.R111K|PIKFYVE_uc002vcv.2_Intron|PIKFYVE_uc002vcw.2_Missense_Mutation_p.R111K|PIKFYVE_uc002vcx.2_Intron	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	111					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						GACACAAGAAGGAAAGCAGAA	0.418000													34	37					0	0	1	0	0
LANCL1	10314	broad.mit.edu	37	2	211302499	211302499	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:211302499G>A	uc010zjh.1	-	7	863	c.788C>T	c.(787-789)CCA>CTA	p.P263L	LANCL1_uc002ved.2_Missense_Mutation_p.P263L|LANCL1_uc010fuq.2_Missense_Mutation_p.P263L	NM_001136574	NP_001130046	O43813	LANC1_HUMAN	lanthionine synthetase C-like protein 1	263						cytoplasm|integral to plasma membrane|microtubule cytoskeleton|nucleus	catalytic activity|G-protein coupled receptor activity|glutathione binding|low-density lipoprotein particle receptor binding|SH3 domain binding|zinc ion binding				0				Epithelial(149;0.00562)|Lung(261;0.0468)|LUSC - Lung squamous cell carcinoma(261;0.0495)|all cancers(144;0.0569)		ACCTATACATGGAGGGTAATT	0.488000													56	70					0	0	1	0	0
BARD1	580	broad.mit.edu	37	2	215674232	215674232	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:215674232C>A	uc002veu.2	-	1	197	c.62G>T	c.(61-63)CGT>CTT	p.R21L	BARD1_uc010zjm.1_5'UTR	NM_000465	NP_000456	Q99728	BARD1_HUMAN	BRCA1 associated RING domain 1	21					cell cycle arrest|DNA repair|negative regulation of apoptosis|negative regulation of mRNA 3'-end processing|negative regulation of protein export from nucleus|positive regulation of apoptosis|positive regulation of protein catabolic process|protein K6-linked ubiquitination|regulation of phosphorylation|tissue homeostasis	BRCA1-A complex|BRCA1-BARD1 complex|cytoplasm	kinase binding|protein heterodimerization activity|protein homodimerization activity|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2		Renal(323;0.0243)		Epithelial(149;3.2e-06)|all cancers(144;0.000461)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		GGGCGCGGAACGAGGCTCGTT	0.692000									Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				14	12					0.000308642	0.00031006	1	1	0
WNT10A	80326	broad.mit.edu	37	2	219747107	219747107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:219747107G>A	uc002vjd.1	+	2	801	c.338G>A	c.(337-339)CGC>CAC	p.R113H		NM_025216	NP_079492	Q9GZT5	WN10A_HUMAN	wingless-type MMTV integration site family,	113					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to transforming growth factor beta stimulus|female gonad development|hair follicle morphogenesis|odontogenesis|regulation of odontogenesis of dentine-containing tooth|sebaceous gland development|skin development|tongue development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			lung(1)|skin(1)	2		Renal(207;0.0474)		Epithelial(149;4.26e-07)|all cancers(144;8.8e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTGGAGACTCGCAACAAGATC	0.577000													40	192					0	0	1	0	0
OBSL1	23363	broad.mit.edu	37	2	220427190	220427190	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:220427190C>G	uc010fwk.2	-	8	2944	c.2887G>C	c.(2887-2889)GAG>CAG	p.E963Q	OBSL1_uc002vmh.1_5'Flank|OBSL1_uc010zli.1_5'UTR|OBSL1_uc010fwl.1_Missense_Mutation_p.E438Q|OBSL1_uc002vmi.2_Missense_Mutation_p.E963Q|OBSL1_uc002vmj.2_Missense_Mutation_p.E550Q	NM_015311	NP_056126	O75147	OBSL1_HUMAN	obscurin-like 1	963	Ig-like 7.				cardiac myofibril assembly	intercalated disc|M band|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity				0		Renal(207;0.0376)		Epithelial(149;2.02e-07)|all cancers(144;1.68e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00834)		CCGGAGTCCTCGAGCTGGACA	0.647000													29	151					0	0	1	0	0
FAM124B	79843	broad.mit.edu	37	2	225266165	225266165	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:225266165A>T	uc002vnx.2	-	1	547	c.321T>A	c.(319-321)TGT>TGA	p.C107*	FAM124B_uc002vnw.2_Nonsense_Mutation_p.C107*	NM_001122779	NP_001116251	Q9H5Z6	F124B_HUMAN	hypothetical protein LOC79843 isoform a	107							protein binding			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0126)|Lung NSC(271;0.0161)|all_hematologic(139;0.138)		Epithelial(121;4.4e-10)|all cancers(144;2.02e-07)|Lung(261;0.00766)|LUSC - Lung squamous cell carcinoma(224;0.00825)		AAAAGTAGGGACACAGCCTTC	0.592000													26	32					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228846528	228846528	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:228846528C>T	uc002vpq.2	-	12	5055	c.5008G>A	c.(5008-5010)GAT>AAT	p.D1670N	SPHKAP_uc002vpp.2_Missense_Mutation_p.D1641N|SPHKAP_uc010zlx.1_3'UTR	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1670						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TGGAAGATATCACCCACTTTC	0.478000													35	40					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884600	228884600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:228884600G>A	uc002vpq.2	-	7	1017	c.970C>T	c.(970-972)CAT>TAT	p.H324Y	SPHKAP_uc002vpp.2_Missense_Mutation_p.H324Y|SPHKAP_uc010zlx.1_Missense_Mutation_p.H324Y	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	324						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GCTTCTGAATGATAATAATGT	0.413000													100	102					0	0	1	0	0
PSMD1	5707	broad.mit.edu	37	2	232010954	232010954	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:232010954G>A	uc002vrn.1	+	18	2130	c.1999G>A	c.(1999-2001)GAA>AAA	p.E667K	PSMD1_uc002vrm.1_Missense_Mutation_p.E667K|PSMD1_uc010fxu.1_Missense_Mutation_p.E531K	NM_002807	NP_002798	Q99460	PSMD1_HUMAN	proteasome 26S non-ATPase subunit 1	667	PC 8.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding			ovary(1)|skin(1)	2		Ovarian(221;0.000626)|Medulloblastoma(418;0.0109)|Renal(207;0.0112)|Lung NSC(271;0.0538)|all_lung(227;0.0713)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;4e-26)|LUSC - Lung squamous cell carcinoma(224;0.0138)|Lung(119;0.0168)	Bortezomib(DB00188)	ATTCTTTCAGGAAGCCATTAA	0.318000													23	32					0	0	1	0	0
AGAP1	116987	broad.mit.edu	37	2	237028857	237028857	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:237028857C>T	uc002vvs.2	+	17	2731	c.2136C>T	c.(2134-2136)ATC>ATT	p.I712I	AGAP1_uc002vvt.2_Silent_p.I659I	NM_001037131	NP_001032208	Q9UPQ3	AGAP1_HUMAN	centaurin, gamma 2 isoform 1	712	Arf-GAP.				protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			ovary(2)|skin(1)	3						AACGGTGGATCCGTGCCAAGT	0.667000													65	55					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238274538	238274538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:238274538G>A	uc002vwl.2	-	12	5926	c.5641C>T	c.(5641-5643)CGC>TGC	p.R1881C	COL6A3_uc002vwo.2_Missense_Mutation_p.R1675C|COL6A3_uc010znj.1_Missense_Mutation_p.R1274C	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1881	VWFA 10.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GTGGGCGAGCGGCCACCGCTG	0.597000													93	141					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238303650	238303650	+	Missense_Mutation	SNP	G	A	A	rs144651558		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:238303650G>A	uc002vwl.2	-	3	574	c.289C>T	c.(289-291)CGT>TGT	p.R97C	COL6A3_uc002vwo.2_Intron|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Intron|COL6A3_uc002vwr.2_Intron|COL6A3_uc010znk.1_Missense_Mutation_p.R97C	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	97	VWFA 1.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TGTTTAGTACGATACGTATTT	0.388000													55	67					0	0	1	0	0
PRLH	51052	broad.mit.edu	37	2	238475779	238475779	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:238475779C>T	uc010znl.1	+	2	225	c.225C>T	c.(223-225)TTC>TTT	p.F75F		NM_015893	NP_056977	P81277	PRRP_HUMAN	prolactin releasing hormone precursor	75						extracellular region					0		Lung NSC(271;0.142)|all_lung(227;0.175)		Epithelial(121;8.28e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.03e-10)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.19e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000329)|Lung(119;0.0106)|LUSC - Lung squamous cell carcinoma(224;0.0249)		TGACCTGCTTCCCCCTGGAAG	0.672000													69	74					0	0	1	0	0
LOC643387	643387	broad.mit.edu	37	2	239140630	239140630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:239140630G>A	uc010znu.1	+	1	304	c.109G>A	c.(109-111)GGG>AGG	p.G37R	LOC151174_uc002vxy.2_5'Flank|LOC151174_uc002vxx.3_5'Flank	NR_026923				Homo sapiens TAR DNA binding protein pseuodgene (LOC643387), non-coding RNA.												0						CCAGTTTCCAGGGGCGTGTGG	0.542000													17	29					0	0	1	0	0
PER2	8864	broad.mit.edu	37	2	239161916	239161916	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:239161916C>T	uc002vyc.2	-	19	2985	c.2748G>A	c.(2746-2748)GGG>GGA	p.G916G	PER2_uc010znv.1_Silent_p.G916G	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	916	Pro-rich.				circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		GGTTTGGGGTCCCCGAGGGGA	0.617000													81	100					0	0	1	0	0
AGXT	189	broad.mit.edu	37	2	241813462	241813462	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:241813462C>T	uc002waa.3	+	6	784	c.663C>T	c.(661-663)TCC>TCT	p.S221S	AGXT_uc002wab.3_5'Flank	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	221					glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	CGCTCATCTCCTTCAGTGACA	0.652000													74	81					0	0	1	0	0
FARP2	9855	broad.mit.edu	37	2	242373707	242373707	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:242373707C>T	uc002wbi.1	+	10	1119	c.1002C>T	c.(1000-1002)TTC>TTT	p.F334F	FARP2_uc010zoq.1_Silent_p.F334F|FARP2_uc010zor.1_Silent_p.F334F	NM_014808	NP_055623	O94887	FARP2_HUMAN	FERM, RhoGEF and pleckstrin domain protein 2	334					axon guidance|neuron remodeling|Rac protein signal transduction|regulation of Rho protein signal transduction	cytoskeleton|cytosol|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(19;4.88e-34)|all_epithelial(40;4.81e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Lung NSC(271;0.0886)|Ovarian(221;0.0905)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;1.81e-33)|all cancers(36;1.61e-30)|OV - Ovarian serous cystadenocarcinoma(60;6.83e-15)|Kidney(56;1.19e-08)|KIRC - Kidney renal clear cell carcinoma(57;8.98e-08)|BRCA - Breast invasive adenocarcinoma(100;1.49e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00125)|Colorectal(34;0.0199)|COAD - Colon adenocarcinoma(134;0.121)		AAGCCGTCTTCTTCAGCCGGG	0.468000													49	44					0	0	1	0	0
PDYN	5173	broad.mit.edu	37	20	1961496	1961496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:1961496C>T	uc010gaj.2	-	3	480	c.238G>A	c.(238-240)GAG>AAG	p.E80K	uc002wfu.1_Intron|PDYN_uc002wfv.2_Missense_Mutation_p.E80K|PDYN_uc010zpt.1_Intron	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	80					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						CCCAAGTCCTCCTTGTCATTG	0.572000													71	92					0	0	1	0	0
FASTKD5	60493	broad.mit.edu	37	20	3129526	3129526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:3129526G>A	uc002whz.2	-	2	502	c.191C>T	c.(190-192)TCT>TTT	p.S64F	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	64					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						TCTCCGAGAAGAGAAGGTGCT	0.512000													51	40					0	0	1	0	0
C20orf194	25943	broad.mit.edu	37	20	3240668	3240668	+	Silent	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:3240668T>C	uc002wii.2	-	32	2931	c.2880A>G	c.(2878-2880)GAA>GAG	p.E960E	C20orf194_uc002wij.3_Silent_p.E699E|C20orf194_uc002wik.2_Silent_p.E634E	NM_001009984	NP_001009984	Q5TEA3	CT194_HUMAN	hypothetical protein LOC25943	960											0						TCAATTTACCTTCATACCTTA	0.269000													21	61					0	0	1	0	0
SEC23B	10483	broad.mit.edu	37	20	18491677	18491677	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:18491677T>A	uc002wqz.1	+	2	641	c.198T>A	c.(196-198)TGT>TGA	p.C66*	SEC23B_uc002wra.1_Nonsense_Mutation_p.C66*|SEC23B_uc002wrb.1_Nonsense_Mutation_p.C66*|SEC23B_uc010zsb.1_Nonsense_Mutation_p.C66*|SEC23B_uc002wrc.1_Nonsense_Mutation_p.C66*	NM_006363	NP_006354	Q15437	SC23B_HUMAN	Sec23 homolog B	66					ER to Golgi vesicle-mediated transport|intracellular protein transport	COPII vesicle coat|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane	zinc ion binding			ovary(1)	1						GGCCAACTTGTAAAGCTGTTC	0.383000													93	118					0	0	1	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20616169	20616169	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:20616169G>A	uc002wrz.2	-	9	1041	c.898C>T	c.(898-900)CGT>TGT	p.R300C	RALGAPA2_uc010gcx.2_Missense_Mutation_p.R4C|RALGAPA2_uc010zsg.1_5'UTR	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	300					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						AAAACAACACGAGCTGCCATA	0.358000													64	110					0	0	1	0	0
CD93	22918	broad.mit.edu	37	20	23066219	23066219	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:23066219G>A	uc002wsv.2	-	1	759	c.611C>T	c.(610-612)CCC>CTC	p.P204L		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	204	Extracellular (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					GGTCTGGAAGGGGGTGGTGTA	0.592000													56	74					0	0	1	0	0
NINL	22981	broad.mit.edu	37	20	25457264	25457264	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:25457264G>A	uc002wux.1	-	17	2737	c.2663C>T	c.(2662-2664)ACG>ATG	p.T888M	NINL_uc010gdn.1_Intron	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	888					G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						CGGGCTCTGCGTAGCTTCTGT	0.697000													7	44					0	0	1	0	0
NINL	22981	broad.mit.edu	37	20	25471998	25471999	+	Silent	DNP	GG	AC	AC			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:25471998_25471999GG>AC	uc002wux.1	-	11	1547_1548	c.1473_1474CC>GT	c.(1471-1476)ACCCTG>ACGTTG	p.491_492TL>TL	NINL_uc010gdn.1_Silent_p.491_492TL>TL|NINL_uc010gdo.1_Silent_p.274_275TL>TL|NINL_uc010ztf.1_Silent_p.507_508TL>TL	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	491_492	Potential.				G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						TTCAGGGCCAGGGTCAGCTTCT	0.673000													48	67					0	0	1	0	0
NCOA6	23054	broad.mit.edu	37	20	33330872	33330872	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:33330872G>A	uc002xav.2	-	12	5759	c.3188C>T	c.(3187-3189)CCC>CTC	p.P1063L	NCOA6_uc002xaw.2_Missense_Mutation_p.P1063L	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	1063	NCOA1-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						CTGGGAGTCGGGGTTCAGGGG	0.507000													158	225					0	0	1	0	0
KIAA0406	9675	broad.mit.edu	37	20	36625327	36625328	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:36625327_36625328CC>TT	uc002xhl.2	-	7	3030_3031	c.2821_2822GG>AA	c.(2821-2823)GGT>AAT	p.G941N	KIAA0406_uc002xhm.2_Missense_Mutation_p.G941N	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	941							binding				0		Myeloproliferative disorder(115;0.00874)				AAGAAAGTCACCACACTTGCTT	0.540000													75	126					0	0	1	0	0
KIAA0406	9675	broad.mit.edu	37	20	36640161	36640161	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:36640161G>A	uc002xhl.2	-	3	2267	c.2058C>T	c.(2056-2058)TCC>TCT	p.S686S	KIAA0406_uc002xhm.2_Silent_p.S686S	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	686							binding				0		Myeloproliferative disorder(115;0.00874)				GGTGCTGCAGGGAGTCGTAGC	0.488000													38	64					0	0	1	0	0
L3MBTL	26013	broad.mit.edu	37	20	42169418	42169418	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:42169418C>A	uc010zwh.1	+	21	2337	c.2291C>A	c.(2290-2292)ACA>AAA	p.T764K	L3MBTL_uc002xkl.2_Missense_Mutation_p.T696K|L3MBTL_uc002xkm.2_Missense_Mutation_p.T696K|L3MBTL_uc010ggl.2_Missense_Mutation_p.T701K|L3MBTL_uc002xkn.1_Missense_Mutation_p.T455K|L3MBTL_uc002xko.2_Missense_Mutation_p.T348K|L3MBTL_uc002xkp.2_Missense_Mutation_p.T84K|SGK2_uc002xkq.1_5'UTR	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	696	SAM.				chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			CAGACCCTGACAGGTTGTGAG	0.552000													31	41					3.78316e-11	3.82564e-11	1	1	0
TOX2	84969	broad.mit.edu	37	20	42694723	42694723	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:42694723G>A	uc002xlf.3	+	6	1295	c.1278G>A	c.(1276-1278)ATG>ATA	p.M426I	TOX2_uc010ggo.2_Missense_Mutation_p.M444I|TOX2_uc002xle.3_Missense_Mutation_p.M402I|TOX2_uc010ggp.2_Missense_Mutation_p.M402I|TOX2_uc002xlg.2_Intron|TOX2_uc010zwk.1_Missense_Mutation_p.M322I	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	426	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			AGCTGGCGATGAGCCCCTCAC	0.632000													39	53					0	0	1	0	0
RBPJL	11317	broad.mit.edu	37	20	43940861	43940861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:43940861G>A	uc002xns.2	+	6	517	c.445G>A	c.(445-447)GAA>AAA	p.E149K	RBPJL_uc002xnt.2_Missense_Mutation_p.E149K	NM_014276	NP_055091	Q9UBG7	RBPJL_HUMAN	recombining binding protein L	149					signal transduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				AGCCCCCTAGGAATTCGGCTG	0.547000											OREG0025979	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	83	117					0	0	1	0	0
SULF2	55959	broad.mit.edu	37	20	46331304	46331304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:46331304G>A	uc002xto.2	-	4	856	c.526C>T	c.(526-528)CGG>TGG	p.R176W	SULF2_uc002xtr.2_Missense_Mutation_p.R176W|SULF2_uc002xtq.2_Missense_Mutation_p.R176W|SULF2_uc010ghv.1_Missense_Mutation_p.R176W	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	sulfatase 2 isoform a precursor	176					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						ACCCCGTTCCGACACAGCGTG	0.463000													55	44					0	0	1	0	0
FAM65C	140876	broad.mit.edu	37	20	49218807	49218807	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:49218807G>A	uc002xvm.2	-	13	1767	c.1449C>T	c.(1447-1449)TCC>TCT	p.S483S	FAM65C_uc010zyt.1_Silent_p.S487S|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Silent_p.S483S	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	483										ovary(2)	2						TGTGGAACAGGGAGCCCTGTG	0.682000													27	42					0	0	1	0	0
SALL4	57167	broad.mit.edu	37	20	50407577	50407577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:50407577G>A	uc002xwh.3	-	2	1546	c.1445C>T	c.(1444-1446)TCT>TTT	p.S482F	SALL4_uc010gii.2_Intron|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	482					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TAGCCCTACAGAGGTGGTTAC	0.557000													124	155					0	0	1	0	0
C20orf107	388799	broad.mit.edu	37	20	55111278	55111278	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:55111278G>A	uc010zzh.1	+	2	380	c.300G>A	c.(298-300)AAG>AAA	p.K100K	C20orf107_uc002xxz.2_Silent_p.K100K	NM_001013646	NP_001013668	Q5JX69	CT107_HUMAN	hypothetical protein LOC388799 precursor	100	Cytoplasmic (Potential).					integral to membrane					0			Colorectal(105;0.202)			CTCCACTAAAGAAAAATCAAA	0.393000													18	100					0	0	1	0	0
SPO11	23626	broad.mit.edu	37	20	55913399	55913399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:55913399C>T	uc002xye.2	+	9	905	c.812C>T	c.(811-813)CCT>CTT	p.P271L	SPO11_uc002xyf.2_Missense_Mutation_p.P233L	NM_012444	NP_036576	Q9Y5K1	SPO11_HUMAN	meiotic recombination protein SPO11 isoform a	271					female gamete generation|reciprocal meiotic recombination	chromosome|nucleus	ATP binding|DNA binding|hydrolase activity			breast(2)|skin(1)	3	Lung NSC(12;0.0066)|all_lung(29;0.0188)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;1.73e-14)|Epithelial(14;9.02e-10)|all cancers(14;9.31e-09)			TTTCATGTTCCTGTTTTCACT	0.313000								Editing_and_processing_nucleases					32	38					0	0	1	0	0
PCK1	5105	broad.mit.edu	37	20	56140097	56140097	+	Silent	SNP	T	A	A	rs140553751		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:56140097T>A	uc002xyn.3	+	9	1483	c.1320T>A	c.(1318-1320)GGT>GGA	p.G440G	PCK1_uc010zzm.1_Silent_p.G123G	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	440					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			CTGCTAAAGGTGTCCCTCTAG	0.468000													15	140					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57768340	57768340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:57768340G>A	uc002yan.2	+	1	2266	c.2266G>A	c.(2266-2268)GAA>AAA	p.E756K		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	756						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					TGGGAGGCTGGAACTGGGGTG	0.642000													8	27					0	0	1	0	0
OSBPL2	9885	broad.mit.edu	37	20	60854354	60854354	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:60854354G>A	uc002yck.1	+	7	835	c.633G>A	c.(631-633)GTG>GTA	p.V211V	OSBPL2_uc002ycl.1_Silent_p.V199V|OSBPL2_uc011aah.1_Silent_p.V119V|OSBPL2_uc002ycm.1_Nonsense_Mutation_p.W20*	NM_144498	NP_653081	Q9H1P3	OSBL2_HUMAN	oxysterol-binding protein-like protein 2 isoform	211					lipid transport		lipid binding			ovary(1)|central_nervous_system(1)	2	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;1.33e-06)			GCAAAAGCGTGGAGGCGGAGC	0.592000													45	53					0	0	1	0	0
C20orf195	79025	broad.mit.edu	37	20	62187942	62187942	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:62187942T>C	uc002yfj.2	+	2	1018	c.926T>C	c.(925-927)CTG>CCG	p.L309P	C20orf195_uc002yfk.2_Missense_Mutation_p.L309P	NM_024059	NP_076964	Q9BVV2	CT195_HUMAN	hypothetical protein LOC79025	309											0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			CCGGAGCCCCTGGAGGGGCCC	0.512000													132	163					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10998223	10998223	+	RNA	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr21:10998223C>T	uc002yis.1	-	11		c.2030G>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGTATGGTTTCCTTTTTCTCT	0.368000													25	102					0	0	1	0	0
USP25	29761	broad.mit.edu	37	21	17191139	17191139	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr21:17191139G>A	uc002yjy.1	+	10	1271	c.1054G>A	c.(1054-1056)GAG>AAG	p.E352K	USP25_uc011aby.1_Missense_Mutation_p.E352K|USP25_uc002yjz.1_Missense_Mutation_p.E352K|USP25_uc010gla.1_Intron	NM_013396	NP_037528	Q9UHP3	UBP25_HUMAN	ubiquitin specific peptidase 25	352					protein modification process|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)|liver(2)	5				Epithelial(23;7.55e-05)|all cancers(11;0.000429)|COAD - Colon adenocarcinoma(22;0.00543)|OV - Ovarian serous cystadenocarcinoma(11;0.00743)|Colorectal(24;0.0116)|Lung(58;0.0853)|LUSC - Lung squamous cell carcinoma(23;0.0889)		TTTACATTCAGAGAATTCAGG	0.403000													74	106					0	0	1	0	0
RNF160	26046	broad.mit.edu	37	21	30365209	30365209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr21:30365209G>A	uc002ymr.2	-	1	69	c.56C>T	c.(55-57)TCT>TTT	p.S19F		NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	Error:Variant_position_missing_in_O94822_after_alignment							ligase activity|zinc ion binding				0						GGCGGCGGAAGAGGACACCCT	0.632000													7	6					0	0	1	0	0
GRIK1	2897	broad.mit.edu	37	21	31027130	31027130	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr21:31027130C>T	uc002yno.1	-	5	1244	c.780G>A	c.(778-780)CTG>CTA	p.L260L	GRIK1_uc002ynn.2_Silent_p.L260L|GRIK1_uc011acs.1_Silent_p.L260L|GRIK1_uc011act.1_Silent_p.L204L|GRIK1_uc010glq.1_Silent_p.L118L|GRIK1_uc002ynr.2_Silent_p.L260L	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	260	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	ATGCACTTACCAGGGTTGTGA	0.413000													120	105					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32624215	32624215	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr21:32624215G>A	uc002yow.1	-	6	1726	c.1254C>T	c.(1252-1254)AGC>AGT	p.S418S	TIAM1_uc011adk.1_Silent_p.S418S|TIAM1_uc011adl.1_Silent_p.S418S|TIAM1_uc002yox.1_Silent_p.S26S	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	418					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						GGCCCGGAGAGCTCAGGGTGC	0.667000													80	75					0	0	1	0	0
SYNJ1	8867	broad.mit.edu	37	21	34022609	34022609	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr21:34022609G>A	uc002yqh.2	-	23	3039	c.3039C>T	c.(3037-3039)ATC>ATT	p.I1013I	SYNJ1_uc011ads.1_Silent_p.I969I|SYNJ1_uc002yqf.2_Silent_p.I974I|SYNJ1_uc002yqg.2_Silent_p.I969I|SYNJ1_uc002yqi.2_Silent_p.I1013I	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	974	Pro-rich.						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						CCAAATTTTTGATCCAGTCTG	0.348000													42	126					0	0	1	0	0
DONSON	29980	broad.mit.edu	37	21	34960667	34960667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr21:34960667G>A	uc002ysk.2	-	1	348	c.281C>T	c.(280-282)CCC>CTC	p.P94L	DONSON_uc002ysn.1_Intron|DONSON_uc002ysi.1_5'Flank|DONSON_uc002ysj.2_5'Flank|DONSON_uc002ysl.2_5'UTR|DONSON_uc010gme.2_Missense_Mutation_p.P94L|DONSON_uc002ysm.2_Missense_Mutation_p.P94L	NM_017613	NP_060083	Q9NYP3	DONS_HUMAN	downstream neighbor of SON	94					multicellular organismal development	nucleus				ovary(1)|central_nervous_system(1)	2						CGGCCCGTCGGGGGGCTCCGC	0.766000													7	6					0	0	1	0	0
CLIC6	54102	broad.mit.edu	37	21	36079603	36079603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr21:36079603G>A	uc010gmt.1	+	3	1454	c.1454G>A	c.(1453-1455)GGA>GAA	p.G485E	CLIC6_uc002yuf.1_Missense_Mutation_p.G467E	NM_053277	NP_444507	Q96NY7	CLIC6_HUMAN	chloride intracellular channel 6	485						chloride channel complex|cytoplasm|plasma membrane	voltage-gated chloride channel activity			ovary(1)|central_nervous_system(1)	2						GAGAGTATCGGAAATTGCCCG	0.443000													47	44					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	42080479	42080479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr21:42080479G>A	uc002yyq.1	-	2	714	c.262C>T	c.(262-264)CCT>TCT	p.P88S	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	88	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AAGCTTGAAGGAGGGAAGGGG	0.498000													54	55					0	0	1	0	0
TMPRSS2	7113	broad.mit.edu	37	21	42852511	42852511	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr21:42852511T>C	uc002yzj.2	-	6	598	c.464A>G	c.(463-465)AAC>AGC	p.N155S	TMPRSS2_uc010gor.2_Missense_Mutation_p.N192S|TMPRSS2_uc010gos.1_Missense_Mutation_p.N155S	NM_005656	NP_005647	O15393	TMPS2_HUMAN	transmembrane protease, serine 2 isoform 2	155	Extracellular (Potential).|SRCR.				proteolysis	cytoplasm|extracellular region|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity		TMPRSS2/ERG(2499)|TMPRSS2/ETV1(24)	prostate(2523)|central_nervous_system(1)	2524		Prostate(19;4.48e-07)|all_epithelial(19;0.031)				AAGGATGAAGTTTGGTCCGTA	0.418000			T	ERG|ETV1|ETV4|ETV5	prostate 								24	42					0	0	1	0	0
DNMT3L	29947	broad.mit.edu	37	21	45671560	45671560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr21:45671560C>T	uc002zeg.1	-	9	1199	c.715G>A	c.(715-717)GAT>AAT	p.D239N	DNMT3L_uc002zeh.1_Missense_Mutation_p.D239N	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	239					DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding			skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		TACACAAGATCGAAGGGTCCC	0.652000													46	35					0	0	1	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	46000351	46000351	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr21:46000351G>A	uc002zfl.1	-	1	131	c.105C>T	c.(103-105)CCC>CCT	p.P35P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	35	22 X 5 AA repeats of C-C-X(3).					keratin filament					0						GGGTCAGGCAGGGGGCGGTGC	0.682000													78	137					0	0	1	0	0
POFUT2	23275	broad.mit.edu	37	21	46685477	46685477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr21:46685477G>A	uc002zhc.2	-	9	1235	c.1210C>T	c.(1210-1212)CCC>TCC	p.P404S	POFUT2_uc002zha.2_RNA|POFUT2_uc002zhb.2_RNA|POFUT2_uc002zhd.2_3'UTR	NM_133635	NP_598368	Q9Y2G5	OFUT2_HUMAN	protein O-fucosyltransferase 2 isoform C	404					fucose metabolic process	endoplasmic reticulum	peptide-O-fucosyltransferase activity				0				Colorectal(79;0.243)		GTCGTCTTGGGGTCCAACCCC	0.517000													35	74					0	0	1	0	0
MCM3AP	8888	broad.mit.edu	37	21	47693322	47693322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr21:47693322G>A	uc002zir.1	-	7	2212	c.2176C>T	c.(2176-2178)CGC>TGC	p.R726C		NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	726					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					CCACGCGTGCGGTTCCACACG	0.507000													34	66					0	0	1	0	0
DIP2A	23181	broad.mit.edu	37	21	47985697	47985697	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr21:47985697C>T	uc002zjo.2	+	36	4419	c.4236C>T	c.(4234-4236)GAC>GAT	p.D1412D	DIP2A_uc011afz.1_Silent_p.D1408D|DIP2A_uc002zjs.2_Silent_p.D92D|DIP2A_uc002zjt.2_RNA	NM_015151	NP_055966	Q14689	DIP2A_HUMAN	disco-interacting protein 2A isoform a	1412					multicellular organismal development	nucleus	catalytic activity|transcription factor binding			ovary(2)	2	Breast(49;0.0933)			Epithelial(3;3.12e-06)|OV - Ovarian serous cystadenocarcinoma(3;5.68e-06)|all cancers(3;4.08e-05)|Colorectal(79;0.0129)|COAD - Colon adenocarcinoma(84;0.0824)		TTCATGCCGACCACTTCAGTG	0.587000													38	86					0	0	1	0	0
MICAL3	57553	broad.mit.edu	37	22	18300618	18300618	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:18300618G>A	uc002zng.3	-	26	5162	c.4809C>T	c.(4807-4809)TCC>TCT	p.S1603S	MICAL3_uc011agl.1_Silent_p.S1519S|MICAL3_uc010gre.1_5'Flank	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1603						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		GGCTCTTCACGGACTTCTCCC	0.692000													3	57					0	0	1	0	0
HIRA	7290	broad.mit.edu	37	22	19373209	19373209	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:19373209C>T	uc002zpf.1	-	12	1384	c.1164G>A	c.(1162-1164)GAG>GAA	p.E388E	HIRA_uc011agx.1_Silent_p.E254E|HIRA_uc010grn.1_Silent_p.E388E|HIRA_uc010gro.1_Silent_p.E344E|HIRA_uc010grp.2_RNA	NM_003325	NP_003316	P54198	HIRA_HUMAN	HIR histone cell cycle regulation defective	388					chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Colorectal(54;0.0993)					AGAGCTGGGCCTCGGTCATGA	0.597000													21	22					0	0	1	0	0
RTN4R	65078	broad.mit.edu	37	22	20229598	20229598	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:20229598G>A	uc002zrv.2	-	2	1259	c.1058C>T	c.(1057-1059)GCT>GTT	p.A353V	RTN4R_uc002zru.2_Missense_Mutation_p.A125V	NM_023004	NP_075380	Q9BZR6	RTN4R_HUMAN	reticulon 4 receptor precursor	353					axonogenesis|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	anchored to membrane|cell surface|endoplasmic reticulum|plasma membrane	protein binding|receptor activity				0	Colorectal(54;0.0993)					GCCTGCCGAAGCTGGTCTTCC	0.667000													42	80					0	0	1	0	0
KLHL22	84861	broad.mit.edu	37	22	20819536	20819536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:20819536G>A	uc002zsl.1	-	4	830	c.721C>T	c.(721-723)CTT>TTT	p.L241F	KLHL22_uc011ahr.1_Missense_Mutation_p.L98F|KLHL22_uc002zsm.1_Missense_Mutation_p.L241F	NM_032775	NP_116164	Q53GT1	KLH22_HUMAN	kelch-like	241					cell division	Cul3-RING ubiquitin ligase complex				lung(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			ACTGTCTCAAGGAGCTTTGGG	0.612000													22	34					0	0	1	0	0
RGL4	266747	broad.mit.edu	37	22	24036534	24036534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:24036534G>A	uc002zxn.2	+	5	2083	c.913G>A	c.(913-915)GAG>AAG	p.E305K	LOC91316_uc002zxh.3_5'Flank|LOC91316_uc002zxi.3_5'Flank|LOC91316_uc002zxk.3_RNA|LOC91316_uc010gua.2_Intron|LOC91316_uc002zxl.3_Intron|LOC91316_uc011aiz.1_RNA|LOC91316_uc002zxm.3_RNA|RGL4_uc002zxo.2_Missense_Mutation_p.E305K|RGL4_uc002zxp.1_Missense_Mutation_p.E169K|RGL4_uc002zxq.2_Missense_Mutation_p.E169K	NM_153615	NP_705843	Q8IZJ4	RGDSR_HUMAN	ral guanine nucleotide dissociation	305	Ras-GEF.				small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle	guanyl-nucleotide exchange factor activity			ovary(1)	1						CCCTCTCCAGGAGTGCCTAAG	0.572000													57	37					0	0	1	0	0
SMARCB1	6598	broad.mit.edu	37	22	24145601	24145601	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:24145601A>G	uc002zyb.2	+	5	827	c.620A>G	c.(619-621)AAC>AGC	p.N207S	SMARCB1_uc002zya.2_Intron|SMARCB1_uc002zyc.2_Missense_Mutation_p.N198S|SMARCB1_uc002zyd.2_Missense_Mutation_p.N216S	NM_003073	NP_003064	Q12824	SNF5_HUMAN	SWI/SNF related, matrix associated, actin	207	HIV-1 integrase-binding.|1.|2 X approximate tandem repeats.|MYC-binding.				cell cycle|chromatin remodeling|DNA integration|interspecies interaction between organisms|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|retroviral genome replication|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleolus|nucleoplasm|SWI/SNF complex	p53 binding	p.?(5)		soft_tissue(193)|central_nervous_system(172)|haematopoietic_and_lymphoid_tissue(23)|meninges(5)|skin(5)|bone(4)|ovary(2)|endometrium(1)|lung(1)|pancreas(1)	407		Medulloblastoma(6;2.2e-09)|all_neural(6;2.73e-05)				TTCACCTGGAACATGAATGGT	0.612000			D|N|F|S		malignant rhabdoid 	malignant rhabdoid			Rhabdoid_Predisposition_syndrome|Schwannomatosis				19	54					0	0	1	0	0
UPB1	51733	broad.mit.edu	37	22	24896233	24896233	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:24896233C>T	uc003aaf.2	+	2	384	c.263C>T	c.(262-264)CCT>CTT	p.P88L	UPB1_uc003aae.2_Intron|UPB1_uc011ajt.1_Missense_Mutation_p.P88L	NM_016327	NP_057411	Q9UBR1	BUP1_HUMAN	beta-ureidopropionase	88	CN hydrolase.				pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol	beta-ureidopropionase activity|metal ion binding			ovary(2)	2	Colorectal(2;0.0339)					GCAAATGCCCCTGTGGCAGAA	0.577000													30	60					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26286818	26286818	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:26286818C>T	uc003abz.1	+	26	4660	c.4410C>T	c.(4408-4410)GCC>GCT	p.A1470A	MYO18B_uc003aca.1_Silent_p.A1351A|MYO18B_uc010guy.1_Silent_p.A1352A|MYO18B_uc010guz.1_Silent_p.A1351A|MYO18B_uc011aka.1_Silent_p.A624A|MYO18B_uc011akb.1_Silent_p.A983A	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1470	Potential.|Tail.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GGCTACAGGCCTTCCGGGAGG	0.612000													14	39					0	0	1	0	0
CRYBA4	1413	broad.mit.edu	37	22	27026359	27026359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:27026359G>A	uc003acz.3	+	6	534	c.499G>A	c.(499-501)GAT>AAT	p.D167N		NM_001886	NP_001877	P53673	CRBA4_HUMAN	crystallin, beta A4	167	Beta/gamma crystallin 'Greek key' 4.				camera-type eye development|visual perception	soluble fraction	structural constituent of eye lens				0						GCTGGAATGCGATCACCATTC	0.547000													21	33					0	0	1	0	0
EWSR1	2130	broad.mit.edu	37	22	29695761	29695761	+	Silent	SNP	C	T	T	rs111270799	byFrequency	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:29695761C>T	uc003aet.2	+	16	2179	c.1851C>T	c.(1849-1851)GGC>GGT	p.G617G	EWSR1_uc003aev.2_Silent_p.G622G|EWSR1_uc003aew.2_Silent_p.G561G|EWSR1_uc003aex.2_Silent_p.G616G|EWSR1_uc003aey.2_Silent_p.G412G|EWSR1_uc003aez.2_Silent_p.G278G	NM_005243	NP_005234	Q01844	EWS_HUMAN	Ewing sarcoma breakpoint region 1 isoform 2	617	Arg/Gly/Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	calmodulin binding|nucleotide binding|RNA binding|zinc ion binding		EWSR1/FLI1(2266)|EWSR1/ATF1(323)|EWSR1/WT1(231)|EWSR1/ERG(162)|EWSR1/NR4A3(140)|EWSR1/DDIT3(43)|EWSR1/CREB1(42)|EWSR1/FEV(10)|EWSR1/POU5F1(10)|EWSR1/ETV1(7)|EWSR1/ETV4(6)|EWSR1/ZNF384(4)|EWSR1/PBX1(3)|EWSR1/SP3(3)|EWSR1/PATZ1(2)	bone(2526)|soft_tissue(702)|skin(8)|autonomic_ganglia(4)|haematopoietic_and_lymphoid_tissue(4)|salivary_gland(2)|central_nervous_system(2)|NS(2)|pancreas(2)|lung(1)|ovary(1)	3254						GACGAGGTGGCCCTGGGGGGC	0.597000			T	FLI1|ERG|ZNF278|NR4A3|FEV|ATF1|ETV1|ETV4|WT1|ZNF384|CREB1|POU5F1| PBX1	Ewing sarcoma| desmoplastic small round cell tumor |ALL|clear cell sarcoma|sarcoma|myoepithelioma								11	5					0	0	1	0	0
NEFH	4744	broad.mit.edu	37	22	29885601	29885601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:29885601G>A	uc003afo.2	+	4	2043	c.1972G>A	c.(1972-1974)GAA>AAA	p.E658K	NEFH_uc003afp.2_5'UTR	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	664	30 X 6 AA repeats of K-S-P-[AEPV]-[EAK]- [AEVK].|Tail.				cell death|nervous system development	neurofilament					0						CCCAGAGAAGGAAGAGGCCAA	0.562000													23	71					0	0	1	0	0
LARGE	9215	broad.mit.edu	37	22	33673082	33673082	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:33673082C>T	uc003and.3	-	15	2616	c.2037G>A	c.(2035-2037)TGG>TGA	p.W679*	LARGE_uc011amd.1_Nonsense_Mutation_p.W478*|LARGE_uc003ane.3_Nonsense_Mutation_p.W679*|LARGE_uc010gwp.2_Nonsense_Mutation_p.W627*|LARGE_uc011ame.1_Nonsense_Mutation_p.W611*|LARGE_uc011amf.1_Nonsense_Mutation_p.W630*	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase	679	Lumenal (Potential).				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				CCACTTTGTTCCAGCCAAAGC	0.557000													37	106					0	0	1	0	0
C22orf33	339669	broad.mit.edu	37	22	37398061	37398061	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:37398061C>T	uc003aqf.2	-	3	452	c.306G>A	c.(304-306)TCG>TCA	p.S102S	C22orf33_uc003aqe.2_Silent_p.S17S	NM_001163857	NP_001157329	O43247	EAN57_HUMAN	hypothetical protein LOC339669 isoform 1	102											0						TGTTCTCTCTCGAGGAGGATC	0.657000													14	14					0	0	1	0	0
MPST	4357	broad.mit.edu	37	22	37425444	37425444	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:37425444C>T	uc003aqj.2	+	4	1195	c.783C>T	c.(781-783)GCC>GCT	p.A261A	MPST_uc003aqi.1_3'UTR|MPST_uc003aqm.2_Silent_p.A261A|MPST_uc011amu.1_Silent_p.A281A|MPST_uc003aql.2_Silent_p.A261A|MPST_uc003aqn.2_3'UTR|MPST_uc003aqo.2_3'UTR	NM_001130517	NP_001123989	P25325	THTM_HUMAN	mercaptopyruvate sulfurtransferase isoform 2	261	Rhodanese 2.				cyanate catabolic process|response to toxin		3-mercaptopyruvate sulfurtransferase activity|thiosulfate sulfurtransferase activity				0						CACTAGGGGCCTACCTCTGCG	0.637000													24	20					0	0	1	0	0
ELFN2	114794	broad.mit.edu	37	22	37771076	37771076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:37771076C>T	uc003asq.3	-	3	1285	c.499G>A	c.(499-501)GAC>AAC	p.D167N		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	167	LRR 5.|Extracellular (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					GTGGCACCGTCCAGGCGGCTG	0.647000													101	65					0	0	1	0	0
CDC42EP1	11135	broad.mit.edu	37	22	37964254	37964254	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:37964254C>T	uc003asz.3	+	3	1006	c.603C>T	c.(601-603)GAC>GAT	p.D201D		NM_152243	NP_689449	Q00587	BORG5_HUMAN	CDC42 effector protein 1	201					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|endomembrane system|Golgi apparatus|plasma membrane	protein binding				0	Melanoma(58;0.0574)					TGGACCTCGACCTTGGGCCCT	0.657000													105	80					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38155261	38155261	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:38155261A>G	uc003atr.2	+	17	6585	c.6314A>G	c.(6313-6315)TAC>TGC	p.Y2105C	TRIOBP_uc003atu.2_Missense_Mutation_p.Y1933C|TRIOBP_uc003atv.2_Missense_Mutation_p.Y392C|TRIOBP_uc003atw.2_Missense_Mutation_p.Y392C|TRIOBP_uc003atx.1_5'UTR|TRIOBP_uc010gxh.2_5'UTR	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	2105	Potential.				actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CCCCCGGGCTACATCTCACAG	0.547000													5	81					0	0	1	0	0
DNAJB7	150353	broad.mit.edu	37	22	41257771	41257771	+	Silent	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:41257771A>G	uc003azj.2	-	1	360	c.228T>C	c.(226-228)GGT>GGC	p.G76G	XPNPEP3_uc011aox.1_Intron|XPNPEP3_uc003azh.2_Intron|XPNPEP3_uc003azi.2_Intron|XPNPEP3_uc011aoy.1_5'Flank|XPNPEP3_uc003azg.1_RNA|XPNPEP3_uc003azf.1_RNA|XPNPEP3_uc010gyh.1_5'Flank	NM_145174	NP_660157	Q7Z6W7	DNJB7_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 7	76					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)	1						AATGACTTCCACCTCCGTTTA	0.353000													4	150					0	0	1	0	0
XPNPEP3	63929	broad.mit.edu	37	22	41265055	41265055	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:41265055G>C	uc003azh.2	+	2	209	c.117G>C	c.(115-117)AGG>AGC	p.R39S	XPNPEP3_uc011aox.1_Missense_Mutation_p.R39S|XPNPEP3_uc003azi.2_5'UTR|XPNPEP3_uc011aoy.1_RNA|XPNPEP3_uc010gyh.1_RNA	NM_022098	NP_071381	Q9NQH7	XPP3_HUMAN	X-prolyl aminopeptidase (aminopeptidase P) 3,	39					cellular process	mitochondrion	aminopeptidase activity|manganese ion binding|metallopeptidase activity				0						TCCCAGAAAGGAGGATTCCAA	0.458000													99	82					0	0	1	0	0
SCUBE1	80274	broad.mit.edu	37	22	43623415	43623415	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:43623415C>T	uc003bdt.1	-	10	1260	c.1172G>A	c.(1171-1173)GGG>GAG	p.G391E		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	391	EGF-like 9; calcium-binding (Potential).				adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				GAGCCGCCTCCCCGGGGGACA	0.662000													32	12					0	0	1	0	0
PHF21B	112885	broad.mit.edu	37	22	45279034	45279034	+	Missense_Mutation	SNP	C	T	T	rs115427466	by1000genomes	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:45279034C>T	uc003bfn.2	-	13	1679	c.1528G>A	c.(1528-1530)GGG>AGG	p.G510R	PHF21B_uc003bfm.2_Missense_Mutation_p.G306R|PHF21B_uc011aqk.1_Missense_Mutation_p.G456R|PHF21B_uc011aql.1_Missense_Mutation_p.G468R	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	510							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		GTCCAGGGCCCGGCCAGCAGT	0.667000													104	205					0	0	1	0	0
SMC1B	27127	broad.mit.edu	37	22	45765931	45765931	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:45765931C>T	uc003bgc.2	-	15	2375	c.2323G>A	c.(2323-2325)GAT>AAT	p.D775N	SMC1B_uc003bgd.2_Missense_Mutation_p.D775N|SMC1B_uc003bge.1_Missense_Mutation_p.D558N	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	775	Potential.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TGGAAGATATCGTCTTCTACC	0.244000													11	6					0	0	1	0	0
FBLN1	2192	broad.mit.edu	37	22	45946486	45946486	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:45946486C>T	uc003bgj.1	+	14	1835	c.1688C>T	c.(1687-1689)TCC>TTC	p.S563F	FBLN1_uc003bgg.1_Missense_Mutation_p.S563F|FBLN1_uc003bgh.2_Missense_Mutation_p.S563F|FBLN1_uc010gzz.2_Missense_Mutation_p.S601F|FBLN1_uc003bgi.1_Missense_Mutation_p.S563F	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	563	EGF-like 9; calcium-binding.				interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TACCGCCGCTCCGCAGCCACG	0.612000													37	123					0	0	1	0	0
CELSR1	9620	broad.mit.edu	37	22	46805046	46805046	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:46805046G>A	uc003bhw.1	-	9	5073	c.5073C>T	c.(5071-5073)CCC>CCT	p.P1691P	CELSR1_uc011arc.1_Silent_p.P4P	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1691	Extracellular (Potential).|Laminin G-like 2.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		TGAAGAGCTGGGGGTGAGGCA	0.652000													29	86					0	0	1	0	0
GRAMD4	23151	broad.mit.edu	37	22	47064588	47064588	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:47064588C>T	uc003bhx.2	+	11	972	c.933C>T	c.(931-933)AAC>AAT	p.N311N	GRAMD4_uc010had.2_Silent_p.N250N	NM_015124	NP_055939	Q6IC98	GRAM4_HUMAN	death-inducing-protein	311					apoptosis	integral to membrane|mitochondrial membrane				ovary(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.166)		TCACACAGAACCTTTTCGGGA	0.473000													56	192					0	0	1	0	0
TBC1D22A	25771	broad.mit.edu	37	22	47274573	47274574	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:47274573_47274574CC>TT	uc003bib.2	+	5	797_798	c.662_663CC>TT	c.(661-663)TCC>TTT	p.S221F	TBC1D22A_uc010haf.2_Missense_Mutation_p.S191F|TBC1D22A_uc003bic.2_Missense_Mutation_p.S162F|TBC1D22A_uc003bie.2_Missense_Mutation_p.S143F|TBC1D22A_uc003bid.2_Intron|TBC1D22A_uc010hag.2_RNA|TBC1D22A_uc003bif.2_Missense_Mutation_p.S174F	NM_014346	NP_055161	Q8WUA7	TB22A_HUMAN	TBC1 domain family, member 22A	221						intracellular	protein homodimerization activity|Rab GTPase activator activity			ovary(1)	1		all_cancers(38;4.44e-05)|all_epithelial(38;0.000507)|Breast(42;0.0488)|all_lung(38;0.0682)|Ovarian(80;0.0731)|all_neural(38;0.0966)|Glioma(61;0.222)|Lung SC(80;0.236)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0347)|BRCA - Breast invasive adenocarcinoma(115;0.231)		TTGAGCTGGTCCGGAATCCCTA	0.510000													66	41					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	7494352	7494352	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:7494352G>A	uc003bqm.2	+	6	1507	c.1233G>A	c.(1231-1233)GTG>GTA	p.V411V	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.V411V|GRM7_uc003bql.2_Silent_p.V411V|GRM7_uc003bqn.1_5'UTR|GRM7_uc010hch.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	411	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	TCCAGTTCGTGATTGACGCAG	0.438000													31	40					0	0	1	0	0
SETD5	55209	broad.mit.edu	37	3	9489684	9489684	+	Silent	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:9489684C>A	uc003brt.2	+	15	2532	c.2097C>A	c.(2095-2097)ACC>ACA	p.T699T	SETD5_uc003brs.1_Silent_p.T680T|SETD5_uc003bru.2_Silent_p.T601T|SETD5_uc003brv.2_Silent_p.T588T|SETD5_uc010hck.2_Silent_p.T181T|SETD5_uc003brx.2_Silent_p.T368T	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	699										ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		ACCCCAAAACCAAAAAGGTAA	0.433000													10	11					1.3612e-06	1.37196e-06	1	1	0
BRPF1	7862	broad.mit.edu	37	3	9787362	9787362	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:9787362C>T	uc003bse.2	+	11	3555	c.3156C>T	c.(3154-3156)TCC>TCT	p.S1052S	BRPF1_uc003bsf.2_Silent_p.S1058S|BRPF1_uc003bsg.2_Silent_p.S1051S|BRPF1_uc011ati.1_Silent_p.S957S	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	1052	Required for RUNX1 and RUNX2 transcriptional activation.				histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					AGGCCTACTCCGTGGGCACTG	0.647000													59	63					0	0	1	0	0
IL17RC	84818	broad.mit.edu	37	3	9974647	9974647	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:9974647G>A	uc003bua.2	+	19	1982	c.1746G>A	c.(1744-1746)AGG>AGA	p.R582R	CIDEC_uc003bto.2_Intron|IL17RC_uc003btz.2_Silent_p.R511R|IL17RC_uc011atp.1_Silent_p.R337R|IL17RC_uc003bud.2_Silent_p.R52R|IL17RC_uc003bub.2_Silent_p.R496R|IL17RC_uc010hct.2_Silent_p.R498R|IL17RC_uc010hcu.2_Silent_p.R481R|IL17RC_uc010hcv.2_Silent_p.R479R|IL17RC_uc011atq.1_Missense_Mutation_p.G528R|IL17RC_uc003buc.2_Silent_p.R39R|IL17RC_uc003bue.2_Silent_p.R134R|CRELD1_uc003buf.2_5'Flank|CRELD1_uc003bug.2_5'Flank|CRELD1_uc003buh.2_5'Flank|CRELD1_uc003bui.2_5'Flank|CRELD1_uc003buj.2_5'Flank	NM_153461	NP_703191	Q8NAC3	I17RC_HUMAN	interleukin 17 receptor C isoform 1 precursor	582	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|pancreas(1)	2						CGGCCGCCAGGGGCCGCGCGG	0.736000											OREG0015383	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	29					0	0	1	0	0
SEC13	6396	broad.mit.edu	37	3	10346764	10346764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:10346764C>T	uc003bvn.2	-	7	780	c.661G>A	c.(661-663)GCC>ACC	p.A221T	SEC13_uc003bvl.2_Missense_Mutation_p.A153T|SEC13_uc003bvm.2_Missense_Mutation_p.A207T|SEC13_uc003bvp.2_Missense_Mutation_p.A224T|SEC13_uc003bvo.2_Missense_Mutation_p.A267T|SEC13_uc003bvq.1_Missense_Mutation_p.A207T|SEC13_uc003bvr.1_Missense_Mutation_p.A207T	NM_183352	NP_899195	P55735	SEC13_HUMAN	SEC13 protein isoform 1	221	WD 5.				COPII vesicle coating|intracellular protein transport|mitotic prometaphase|mRNA transport|post-translational protein modification|protein N-linked glycosylation via asparagine|transmembrane transport	cytosol|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Nup107-160 complex	protein binding			ovary(1)	1						ATGGAGGGGGCCCAGGCCACA	0.607000													62	73					0	0	1	0	0
VGLL4	9686	broad.mit.edu	37	3	11606375	11606375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:11606375G>A	uc003bwf.2	-	4	739	c.373C>T	c.(373-375)CCC>TCC	p.P125S	VGLL4_uc010hdx.1_Missense_Mutation_p.P131S|VGLL4_uc003bwg.2_Missense_Mutation_p.P130S|VGLL4_uc010hdv.1_Missense_Mutation_p.P41S|VGLL4_uc010hdw.1_Missense_Mutation_p.P45S|VGLL4_uc011aun.1_Missense_Mutation_p.P66S	NM_014667	NP_055482	Q14135	VGLL4_HUMAN	vestigial like 4 isoform b	125					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1				LUSC - Lung squamous cell carcinoma(1;0.089)|Lung(1;0.111)		CCAAGGCTGGGGAGGGAGGTG	0.721000													38	47					0	0	1	0	0
PPARG	5468	broad.mit.edu	37	3	12447418	12447418	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:12447418G>A	uc003bwx.2	+	5	748	c.657G>A	c.(655-657)GAG>GAA	p.E219E	PPARG_uc003bwr.2_Silent_p.E191E|PPARG_uc003bws.2_Silent_p.E191E|PPARG_uc003bwu.2_Silent_p.E191E|PPARG_uc003bwv.2_Silent_p.E191E|PPARG_uc010hea.1_RNA|PPARG_uc003bwq.1_Silent_p.E191E|PPARG_uc003bwt.1_Silent_p.E191E|PPARG_uc003bww.1_Silent_p.E219E	NM_015869	NP_056953	P37231	PPARG_HUMAN	peroxisome proliferative activated receptor	219	Interaction with FAM120B (By similarity).				activation of caspase activity|cell fate commitment|cell maturation|cellular response to insulin stimulus|epithelial cell differentiation|glucose homeostasis|induction of apoptosis|innate immune response|lipid homeostasis|lipoprotein transport|long-chain fatty acid transport|low-density lipoprotein particle receptor biosynthetic process|monocyte differentiation|negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|placenta development|positive regulation of fat cell differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to lipid|response to low-density lipoprotein particle stimulus|white fat cell differentiation	cytosol|nucleoplasm	activating transcription factor binding|arachidonic acid binding|drug binding|enzyme binding|prostaglandin receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|kidney(1)	2					Atorvastatin(DB01076)|Icosapent(DB00159)|Pioglitazone(DB01132)|Rosiglitazone(DB00412)|Troglitazone(DB00197)	CCGAGAAGGAGAAGCTGTTGG	0.498000			T	PAX8	follicular thyroid		Insulin resistance ; lipodystrophy|familial partial L;diabetes mellitus|insulin-resistantI|with acanthosis nigricans and hypertension						50	78					0	0	1	0	0
FBLN2	2199	broad.mit.edu	37	3	13613109	13613110	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:13613109_13613110GG>AA	uc011avb.1	+	2	1379_1380	c.1254_1255GG>AA	c.(1252-1257)GAGGAG>GAAAAG	p.E419K	FBLN2_uc011auz.1_Missense_Mutation_p.E445K|FBLN2_uc011ava.1_Missense_Mutation_p.E419K|FBLN2_uc011avc.1_Missense_Mutation_p.E419K	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	419	Subdomain NB (Cys-free).|N.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			CCCACGTGGAGGAGGACACAGA	0.584000													24	52					0	0	1	0	0
GRIP2	80852	broad.mit.edu	37	3	14561673	14561673	+	Missense_Mutation	SNP	C	T	T	rs111407877		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:14561673C>T	uc011avi.1	-	10	1265	c.1265G>A	c.(1264-1266)CGG>CAG	p.R422Q	GRIP2_uc011avh.1_5'UTR	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	325	PDZ 3.				synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						GATCTCCAGCCGCACCTTCTC	0.617000													21	14					0	0	1	0	0
ZFYVE20	64145	broad.mit.edu	37	3	15115943	15115943	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:15115943G>A	uc003bzm.1	-	14	2315	c.1701C>T	c.(1699-1701)ACC>ACT	p.T567T	ZFYVE20_uc010hek.1_Silent_p.T567T	NM_022340	NP_071735	Q9H1K0	RBNS5_HUMAN	FYVE-finger-containing Rab5 effector protein	567	Necessary for the interaction with EHD1.				blood coagulation|endosome transport|protein transport	early endosome membrane|plasma membrane	protein binding|zinc ion binding			skin(2)	2						AAGCAAGGTGGGTGCGAGGCT	0.577000													32	43					0	0	1	0	0
RBMS3	27303	broad.mit.edu	37	3	29628691	29628691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:29628691G>A	uc003cel.2	+	4	624	c.394G>A	c.(394-396)GCT>ACT	p.A132T	RBMS3_uc003cek.2_Missense_Mutation_p.A132T|RBMS3_uc010hfq.2_Missense_Mutation_p.A132T|RBMS3_uc003cem.2_Missense_Mutation_p.A131T|RBMS3_uc010hfr.2_Missense_Mutation_p.A132T	NM_001003793	NP_001003793	Q6XE24	RBMS3_HUMAN	RNA binding motif, single stranded interacting	132	RRM 1.					cytoplasm	nucleotide binding|RNA binding			central_nervous_system(1)	1		Ovarian(412;0.0956)				GGCACAGATGGCTAAGGTAAG	0.348000													31	45					0	0	1	0	0
GADL1	339896	broad.mit.edu	37	3	30885747	30885747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:30885747C>T	uc003cep.2	-	8	788	c.741G>A	c.(739-741)ATG>ATA	p.M247I	GADL1_uc003ceq.1_Missense_Mutation_p.M247I	NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	247					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	CCTCAGGTATCATTTTACCTC	0.438000													64	84					0	0	1	0	0
ARPP21	10777	broad.mit.edu	37	3	35750560	35750560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:35750560G>A	uc003cgb.2	+	11	1159	c.895G>A	c.(895-897)GAT>AAT	p.D299N	ARPP21_uc003cga.2_Intron|ARPP21_uc011axy.1_Intron|ARPP21_uc003cgf.2_Intron	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	299						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						ATTTGCACACGATGTGAGTAG	0.438000													28	42					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36871096	36871096	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:36871096C>T	uc003cgj.2	-	13	7288	c.6986G>A	c.(6985-6987)CGA>CAA	p.R2329Q		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2879					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CAACCAGTCTCGTGCATCCCT	0.483000													56	65					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36896953	36896953	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:36896953C>T	uc003cgj.2	-	3	2780	c.2478G>A	c.(2476-2478)AGG>AGA	p.R826R		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1376					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GCTTCGACAGCCTCCGGGATA	0.502000													79	122					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36897926	36897927	+	Missense_Mutation	DNP	AC	CT	CT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:36897926_36897927AC>CT	uc003cgj.2	-	3	1806_1807	c.1504_1505GT>AG	c.(1504-1506)GTT>AGT	p.V502S		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1052					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TTCCCAGTAAACGTGGAATTTC	0.530000													9	11					0	0	1	0	0
SLC22A14	9389	broad.mit.edu	37	3	38348031	38348031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:38348031G>A	uc010hhc.1	+	2	556	c.514G>A	c.(514-516)GAG>AAG	p.E172K	SLC22A14_uc003cia.2_Missense_Mutation_p.E172K|SLC22A14_uc003cib.2_Missense_Mutation_p.E172K|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	172	Extracellular (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		GCTGATCAATGAGGTATGTCT	0.383000													36	158					0	0	1	0	0
ACVR2B	93	broad.mit.edu	37	3	38524763	38524763	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:38524763C>T	uc003cif.2	+	11	1503	c.1479C>T	c.(1477-1479)CTC>CTT	p.L493L	ACVR2B_uc003cig.2_Silent_p.L284L	NM_001106	NP_001097	Q13705	AVR2B_HUMAN	activin A receptor, type IIB precursor	493	Cytoplasmic (Potential).				activin receptor signaling pathway|anterior/posterior pattern formation|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|regulation of transcription, DNA-dependent	cell surface|cytoplasm|integral to plasma membrane	activin receptor activity|ATP binding|growth factor binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			lung(1)	1	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0565)|Kidney(284;0.071)		CGGACTGTCTCGTTTCCCTGG	0.587000													77	81					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38739325	38739325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:38739325C>T	uc003ciq.2	-	27	5386	c.5386G>A	c.(5386-5388)GAT>AAT	p.D1796N		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1796					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TGGATCTTATCTCCAGGGACC	0.478000													21	37					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38739366	38739366	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:38739366C>T	uc003ciq.2	-	27	5345	c.5345G>A	c.(5344-5346)CGA>CAA	p.R1782Q		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1782					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CAGTATATTTCGATTGGGTTT	0.473000													33	56					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38755466	38755466	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:38755466G>A	uc003ciq.2	-	21	3787	c.3787C>T	c.(3787-3789)CGA>TGA	p.R1263*		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1263	III.|Helical; Voltage-sensor; Name=S4 of repeat III; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CCTTCAAATCGAGAAAGAGCC	0.368000													59	71					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38889190	38889190	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:38889190G>A	uc011ays.1	-	26	4570	c.4371C>T	c.(4369-4371)TTC>TTT	p.F1457F		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1457	IV.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GCGTCGGAGGGAAAGGAATGT	0.493000													20	26					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38949515	38949515	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:38949515C>T	uc011ays.1	-	10	1597	c.1398G>A	c.(1396-1398)AGG>AGA	p.R466R		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	466					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AGAAGGACTTCCTTTTCTTAT	0.403000													27	47					0	0	1	0	0
TTC21A	199223	broad.mit.edu	37	3	39170397	39170397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:39170397G>A	uc003cjc.2	+	14	2068	c.1891G>A	c.(1891-1893)GAG>AAG	p.E631K	TTC21A_uc003cje.2_Missense_Mutation_p.E632K|TTC21A_uc003cjd.2_RNA|TTC21A_uc011ayx.1_Missense_Mutation_p.E583K	NM_145755	NP_665698	Q8NDW8	TT21A_HUMAN	tetratricopeptide repeat domain 21A isoform 2	631							binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		GGAACTGGTGGAGGCCCTCCG	0.577000													52	57					0	0	1	0	0
CYP8B1	1582	broad.mit.edu	37	3	42915883	42915883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:42915883C>T	uc003cmh.2	-	1	1751	c.1426G>A	c.(1426-1428)GAC>AAC	p.D476N	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Intron	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	476					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		CGCTGCGGGTCAACATGGGGT	0.562000													35	46					0	0	1	0	0
LARS2	23395	broad.mit.edu	37	3	45518006	45518006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:45518006C>T	uc003cop.1	+	10	1090	c.905C>T	c.(904-906)ACC>ATC	p.T302I	LARS2_uc010hit.1_Missense_Mutation_p.T259I	NM_015340	NP_056155	Q15031	SYLM_HUMAN	leucyl-tRNA synthetase 2, mitochondrial	302					leucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|leucine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.0122)|KIRC - Kidney renal clear cell carcinoma(197;0.0313)|Kidney(197;0.0372)	L-Leucine(DB00149)	TATACGGCCACCCCTGAAGCC	0.562000													79	121					0	0	1	0	0
KIF9	64147	broad.mit.edu	37	3	47284690	47284690	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:47284690C>T	uc010hjp.2	-	17	2164	c.1560G>A	c.(1558-1560)AAG>AAA	p.K520K	KIF9_uc003cqx.2_Silent_p.K520K|KIF9_uc003cqy.2_Intron|KIF9_uc011bat.1_Intron|uc003cqw.1_RNA	NM_001134878	NP_001128350	Q9HAQ2	KIF9_HUMAN	kinesin family member 9 isoform 2	520					blood coagulation|microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000284)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		AATCCAAGTCCTTCCCATTCA	0.542000													32	37					0	0	1	0	0
PTPN23	25930	broad.mit.edu	37	3	47454229	47454229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:47454229C>T	uc003crf.1	+	25	4561	c.4465C>T	c.(4465-4467)CTC>TTC	p.L1489F	PTPN23_uc011bax.1_RNA|PTPN23_uc011bay.1_Missense_Mutation_p.L1359F|uc003cri.2_5'Flank	NM_015466	NP_056281	Q9H3S7	PTN23_HUMAN	protein tyrosine phosphatase, non-receptor type	1489					cilium morphogenesis	cilium|cytoplasmic membrane-bounded vesicle|microtubule basal body	protein tyrosine phosphatase activity			breast(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000271)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGACCTGGTCCTCGGTGGGGA	0.627000													108	119					0	0	1	0	0
ZNF589	51385	broad.mit.edu	37	3	48309809	48309810	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:48309809_48309810CC>TT	uc003csl.3	+	4	694_695	c.628_629CC>TT	c.(628-630)CCA>TTA	p.P210L	ZNF589_uc010hjt.1_Missense_Mutation_p.P207L|ZNF589_uc003csn.2_RNA|ZNF589_uc011bbg.1_Intron|ZNF589_uc003csm.2_Intron	NM_016089	NP_057173	Q86UQ0	ZN589_HUMAN	zinc finger protein 589	210					regulation of transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000649)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGCAGAAACCCCAGGGTTTGGA	0.480000													12	86					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48697010	48697010	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:48697010G>A	uc003cul.2	-	1	3339	c.3058C>T	c.(3058-3060)CGT>TGT	p.R1020C	CELSR3_uc003cuf.1_Missense_Mutation_p.R1090C	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1020	Extracellular (Potential).|Cadherin 7.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CTTACTGTACGGACAATTCCA	0.547000													79	113					0	0	1	0	0
WDR6	11180	broad.mit.edu	37	3	49052332	49052332	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:49052332G>T	uc003cvj.2	+	6	3205	c.3067G>T	c.(3067-3069)GAG>TAG	p.E1023*	WDR6_uc011bby.1_Nonsense_Mutation_p.E471*|WDR6_uc010hkn.2_Nonsense_Mutation_p.E967*|WDR6_uc011bbz.1_Nonsense_Mutation_p.E942*	NM_018031	NP_060501	Q9NNW5	WDR6_HUMAN	WD repeat domain 6 protein	993	WD 15.				cell cycle arrest|negative regulation of cell proliferation	cytoplasm				central_nervous_system(1)	1				Kidney(197;9.12e-07)|KIRC - Kidney renal clear cell carcinoma(197;1.32e-05)|BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000155)		GCCCACCCGTGAGGGCCACCA	0.597000													130	155					3.00498e-84	3.10224e-84	1	1	0
DALRD3	55152	broad.mit.edu	37	3	49053943	49053943	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:49053943G>A	uc003cvk.1	-	8	1085	c.1065C>T	c.(1063-1065)GAC>GAT	p.D355D	DALRD3_uc003cvl.1_Silent_p.D355D|DALRD3_uc003cvm.1_Silent_p.D188D|DALRD3_uc010hko.1_Silent_p.D188D|DALRD3_uc011bca.1_Silent_p.D355D	NM_001009996	NP_001009996	Q5D0E6	DALD3_HUMAN	DALR anticodon binding domain containing 3	355					arginyl-tRNA aminoacylation	cytoplasm	arginine-tRNA ligase activity|ATP binding				0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		TCCAGGCTGGGTCTGAGGGAG	0.562000													42	53					0	0	1	0	0
DAG1	1605	broad.mit.edu	37	3	49569061	49569061	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:49569061C>T	uc003cxc.3	+	3	1535	c.1117C>T	c.(1117-1119)CGA>TGA	p.R373*		NM_004393	NP_004384	Q14118	DAG1_HUMAN	dystroglycan 1 preproprotein	373	Thr-rich.|Required for laminin recognition.|Mucin-like domain.				cytoskeletal anchoring at plasma membrane|interspecies interaction between organisms|microtubule anchoring|negative regulation of cell migration|negative regulation of MAPKKK cascade|negative regulation of protein kinase B signaling cascade	basement membrane|contractile ring|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|extracellular space|filopodium|integral to membrane|integral to membrane of membrane fraction|lamellipodium|nucleoplasm	actin binding|alpha-actinin binding|calcium ion binding|laminin-1 binding|receptor activity|structural constituent of muscle|tubulin binding|vinculin binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;5.13e-05)|Kidney(197;0.00241)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		CATCCGGACTCGAGGCGCCAT	0.597000													112	135					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49688098	49688098	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:49688098C>T	uc003cxe.3	+	4	1686	c.1572C>T	c.(1570-1572)AGC>AGT	p.S524S		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	524					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		TGGAGGGCAGCCTAGGAGAGC	0.587000													121	153					0	0	1	0	0
MST1R	4486	broad.mit.edu	37	3	49928671	49928671	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:49928671C>T	uc003cxy.3	-	17	3867	c.3603G>A	c.(3601-3603)GAG>GAA	p.E1201E	MST1R_uc011bdc.1_Silent_p.E80E	NM_002447	NP_002438	Q04912	RON_HUMAN	macrophage stimulating 1 receptor precursor	1201	Cytoplasmic (Potential).|Protein kinase.				cellular component movement|defense response|multicellular organismal development|positive regulation of cell proliferation|single fertilization|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|macrophage colony-stimulating factor receptor activity|protein binding			ovary(5)|lung(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.65e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00553)|Kidney(197;0.00625)		CAAACTTCTGCTCTGCCAGGT	0.617000													67	81					0	0	1	0	0
SEMA3F	6405	broad.mit.edu	37	3	50211675	50211675	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:50211675G>A	uc003cyj.2	+	5	546	c.348G>A	c.(346-348)GGG>GGA	p.G116G	SEMA3F_uc003cyk.2_Silent_p.G116G	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	116	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		GCGAGTGTGGGAACTTCGTCA	0.637000													61	77					0	0	1	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50416925	50416925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:50416925C>T	uc003daq.2	-	11	1128	c.1090G>A	c.(1090-1092)GTG>ATG	p.V364M	CACNA2D2_uc003dap.2_Missense_Mutation_p.V364M	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	364	VWFA.|Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	CCCTTGGCCACCATGCCCTGC	0.597000													45	55					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51274960	51274960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:51274960C>T	uc011bds.1	+	21	2064	c.2041C>T	c.(2041-2043)CAC>TAC	p.H681Y		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	681						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CAAGTATTTTCACTTTCGACC	0.468000													21	24					0	0	1	0	0
MANF	7873	broad.mit.edu	37	3	51426377	51426377	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:51426377C>T	uc003dbc.2	+	4	477	c.415C>T	c.(415-417)CGA>TGA	p.R139*	RBM15B_uc003dbd.2_5'Flank	NM_006010	NP_006001	P55145	MANF_HUMAN	mesencephalic astrocyte-derived neurotrophic	136					response to unfolded protein	extracellular region	growth factor activity				0						GAAGAAGCTCCGAGTTAAAGA	0.527000											OREG0015594	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	13					0	0	1	0	0
NISCH	11188	broad.mit.edu	37	3	52526214	52526214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:52526214C>T	uc011beg.1	+	22	4303	c.4231C>T	c.(4231-4233)CGC>TGC	p.R1411C	NISCH_uc003ded.3_Missense_Mutation_p.R1411C|NISCH_uc003dee.3_Missense_Mutation_p.R900C|NISCH_uc003deg.1_Intron|NISCH_uc003deh.3_Missense_Mutation_p.R160C	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	1411					apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		GGACGATGGCCGCCGCGTCCG	0.632000													54	202					0	0	1	0	0
STAB1	23166	broad.mit.edu	37	3	52539755	52539755	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:52539755G>A	uc003dej.2	+	15	1727	c.1653G>A	c.(1651-1653)GTG>GTA	p.V551V	STAB1_uc003dei.1_Silent_p.V551V	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	551	Extracellular (Potential).|FAS1 2.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		ATGAGGCTGTGGACAGCTTGC	0.647000													69	106					0	0	1	0	0
STAB1	23166	broad.mit.edu	37	3	52556609	52556610	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:52556609_52556610GG>AA	uc003dej.2	+	61	6723_6724	c.6649_6650GG>AA	c.(6649-6651)GGC>AAC	p.G2217N	STAB1_uc003dek.1_Missense_Mutation_p.G232N|STAB1_uc003del.2_Missense_Mutation_p.G104N	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	2217	Extracellular (Potential).|Link.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GGCCACCAGCGGCCCTTATGGT	0.599000													105	115					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53684914	53684914	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:53684914A>G	uc003dgv.3	+	4	755	c.592A>G	c.(592-594)AAT>GAT	p.N198D	CACNA1D_uc003dgu.3_Missense_Mutation_p.N198D|CACNA1D_uc003dgy.3_Missense_Mutation_p.N198D	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	198	I.|Helical; Name=S3 of repeat I; (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GAATGGATGGAATTTACTGGA	0.378000													43	70					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53736791	53736791	+	Silent	SNP	C	T	T	rs145203578		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:53736791C>T	uc003dgv.3	+	9	1507	c.1344C>T	c.(1342-1344)ATC>ATT	p.I448I	CACNA1D_uc003dgu.3_Silent_p.I448I|CACNA1D_uc003dgy.3_Silent_p.I448I|CACNA1D_uc003dgw.3_Silent_p.I95I	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	448	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	CTGAGGACATCGATCCGGAGA	0.542000													48	53					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53757999	53758000	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:53757999_53758000CC>TT	uc003dgv.3	+	14	2236_2237	c.2073_2074CC>TT	c.(2071-2076)TTCCCT>TTTTCT	p.P692S	CACNA1D_uc003dgu.3_Missense_Mutation_p.P712S|CACNA1D_uc003dgy.3_Missense_Mutation_p.P692S|CACNA1D_uc003dgw.3_Missense_Mutation_p.P359S	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	692	Extracellular (Potential).|II.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	TTGACAATTTCCCTCAAGCACT	0.475000													40	52					0	0	1	0	0
LRTM1	57408	broad.mit.edu	37	3	54958994	54958994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:54958994G>A	uc003dhl.2	-	2	390	c.256C>T	c.(256-258)CTT>TTT	p.L86F	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	86	Extracellular (Potential).|LRR 2.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		AGATTTGAAAGGGAATTGTTG	0.443000													10	26					0	0	1	0	0
FAM116A	201627	broad.mit.edu	37	3	57614557	57614557	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:57614557A>C	uc003dja.2	-	19	1747	c.1676T>G	c.(1675-1677)TTG>TGG	p.L559W		NM_152678	NP_689891	Q8IWF6	F116A_HUMAN	hypothetical protein LOC201627	559										pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000621)|KIRC - Kidney renal clear cell carcinoma(284;0.0485)|Kidney(284;0.0607)		TTTCAGCTTCAAGACAAGGTC	0.358000													10	171					0	0	1	0	0
PTPRG	5793	broad.mit.edu	37	3	62189441	62189441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:62189441G>A	uc003dlb.2	+	12	2691	c.1972G>A	c.(1972-1974)GGA>AGA	p.G658R	PTPRG_uc003dlc.2_Missense_Mutation_p.G658R	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	658	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		CCAGACGGGCGGAAGGAGGGA	0.647000													13	12					0	0	1	0	0
PRICKLE2	166336	broad.mit.edu	37	3	64133293	64133293	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:64133293G>A	uc003dmf.2	-	7	1459	c.873C>T	c.(871-873)TCC>TCT	p.S291S		NM_198859	NP_942559	Q7Z3G6	PRIC2_HUMAN	prickle-like 2	291	LIM zinc-binding 3.					cytoplasm|nuclear membrane	zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(201;0.136)		BRCA - Breast invasive adenocarcinoma(55;0.000971)|KIRC - Kidney renal clear cell carcinoma(15;0.00443)|Kidney(15;0.00497)		GCCCCAGGAGGGATTTCTTGC	0.542000													75	117					0	0	1	0	0
CADM2	253559	broad.mit.edu	37	3	86115857	86115857	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:86115857C>T	uc003dqj.2	+	10	1858	c.1232C>T	c.(1231-1233)CCA>CTA	p.P411L	CADM2_uc003dqk.2_Missense_Mutation_p.P380L|CADM2_uc003dql.2_Missense_Mutation_p.P413L|uc003dqm.1_5'Flank	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	411	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		GAAGATGCACCAGATGCTGAT	0.383000													20	59					0	0	1	0	0
STX19	415117	broad.mit.edu	37	3	93734101	93734101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:93734101G>A	uc003drh.1	-	2	270	c.13C>T	c.(13-15)CTT>TTT	p.L5F	ARL13B_uc003drc.2_Intron|ARL13B_uc010hop.2_Intron|ARL13B_uc003drd.2_Intron|ARL13B_uc003dre.2_Intron|ARL13B_uc003drf.2_Intron|ARL13B_uc003drg.2_Intron	NM_001001850	NP_001001850	Q8N4C7	STX19_HUMAN	syntaxin 19	5					intracellular protein transport|vesicle-mediated transport	membrane	SNAP receptor activity				0						AGTTCTTGAAGTCGGTCTTTC	0.383000													33	43					0	0	1	0	0
EPHA6	285220	broad.mit.edu	37	3	96706317	96706317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:96706317G>A	uc010how.1	+	3	637	c.594G>A	c.(592-594)ATG>ATA	p.M198I	EPHA6_uc003drp.1_Missense_Mutation_p.M198I	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	103	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						ATGTGGAAATGAAATTCACAC	0.403000													19	45					0	0	1	0	0
OR5H6	79295	broad.mit.edu	37	3	97983995	97983995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:97983995G>A	uc003dsi.1	+	1	867	c.867G>A	c.(865-867)ATG>ATA	p.M289I		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	289	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						AAGATATGATGGAGTCTCTAT	0.403000													12	27					0	0	1	0	0
GPR15	2838	broad.mit.edu	37	3	98250982	98250982	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:98250982C>T	uc011bgy.1	+	1	105	c.105C>T	c.(103-105)TTC>TTT	p.F35F		NM_005290	NP_005281	P49685	GPR15_HUMAN	G protein-coupled receptor 15	35	Helical; Name=1; (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1		Lung NSC(201;7.93e-06)|all_neural(597;0.00172)|Hepatocellular(537;0.00825)|Myeloproliferative disorder(1037;0.0255)		Lung(72;0.246)		CCTCTGTCTTCCTTCCAGTCT	0.488000													15	53					0	0	1	0	0
ZPLD1	131368	broad.mit.edu	37	3	102157429	102157429	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:102157429G>A	uc003dvs.1	+	9	980	c.98G>A	c.(97-99)AGA>AAA	p.R33K	ZPLD1_uc003dvt.1_Missense_Mutation_p.R49K|ZPLD1_uc011bhg.1_Missense_Mutation_p.R33K	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	33	Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						CTCCACAGTAGATTTCCTGGT	0.418000													29	22					0	0	1	0	0
RETNLB	84666	broad.mit.edu	37	3	108476006	108476006	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:108476006G>A	uc003dxh.2	-	1	125	c.27C>T	c.(25-27)CTC>CTT	p.L9L		NM_032579	NP_115968	Q9BQ08	RETNB_HUMAN	resistin like beta precursor	9					cell proliferation	extracellular region	hormone activity			skin(1)	1						GGATTAGGATGAGAAGGAGGC	0.517000													16	52					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108822756	108822756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:108822756C>T	uc003dxl.2	-	4	250	c.163G>A	c.(163-165)GAA>AAA	p.E55K	MORC1_uc011bhn.1_Missense_Mutation_p.E55K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	55					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TGCAGTTTTTCATTATCCACT	0.383000													24	86					0	0	1	0	0
DPPA2	151871	broad.mit.edu	37	3	109031453	109031453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:109031453C>T	uc003dxo.2	-	3	367	c.120G>A	c.(118-120)ATG>ATA	p.M40I		NM_138815	NP_620170	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	40						nucleus	nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)	3						CGCTTGGTTCCATTTGTTCCA	0.413000													59	74					0	0	1	0	0
KIAA2018	205717	broad.mit.edu	37	3	113377887	113377887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:113377887G>A	uc003eam.2	-	7	3053	c.2642C>T	c.(2641-2643)TCG>TTG	p.S881L	KIAA2018_uc003eal.2_Missense_Mutation_p.S825L	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	881	Ser-rich.				regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						CTTAGATTTCGATACAGACTC	0.428000													38	99					0	0	1	0	0
KIAA2018	205717	broad.mit.edu	37	3	113380144	113380144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:113380144G>A	uc003eam.2	-	7	796	c.385C>T	c.(385-387)CTT>TTT	p.L129F	KIAA2018_uc003eal.2_Missense_Mutation_p.L73F	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	129					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						GAGTTTTTAAGATTTCCTTTC	0.368000													28	62					0	0	1	0	0
ZDHHC23	254887	broad.mit.edu	37	3	113673157	113673157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:113673157G>A	uc003eau.2	+	3	1071	c.772G>A	c.(772-774)GAG>AAG	p.E258K	ZDHHC23_uc003eav.2_Missense_Mutation_p.E252K	NM_173570	NP_775841	Q8IYP9	ZDH23_HUMAN	zinc finger, DHHC domain containing 23	258						integral to membrane	acyltransferase activity|zinc ion binding			ovary(2)	2						CAAAGCGAAGGAGGACTGGTG	0.582000													27	24					0	0	1	0	0
B4GALT4	8702	broad.mit.edu	37	3	118948832	118948832	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:118948832G>A	uc003ecg.2	-	3	756	c.115C>T	c.(115-117)CAA>TAA	p.Q39*	B4GALT4_uc003ece.1_Nonsense_Mutation_p.Q39*|B4GALT4_uc003ecf.2_RNA|B4GALT4_uc003ech.2_Nonsense_Mutation_p.Q39*|B4GALT4_uc003eci.2_Nonsense_Mutation_p.Q39*|B4GALT4_uc011biy.1_Intron	NM_212543	NP_997708	O60513	B4GT4_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	39	Lumenal (Potential).				membrane lipid metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	metal ion binding|N-acetyllactosamine synthase activity				0				GBM - Glioblastoma multiforme(114;0.222)	N-Acetyl-D-glucosamine(DB00141)	GGAATCTCTTGAATGGCACCC	0.453000													53	34					0	0	1	0	0
C3orf15	89876	broad.mit.edu	37	3	119469924	119469924	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:119469924C>T	uc003ede.3	+	17	2361	c.2284C>T	c.(2284-2286)CAA>TAA	p.Q762*	C3orf15_uc010hqz.2_Nonsense_Mutation_p.Q700*|C3orf15_uc011bjd.1_Nonsense_Mutation_p.Q636*|C3orf15_uc011bje.1_Nonsense_Mutation_p.Q742*|C3orf15_uc003edg.3_RNA|C3orf15_uc003edh.3_RNA	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	598						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		GAAAGAAACTCAAAATGAGAA	0.413000													32	25					0	0	1	0	0
GPR156	165829	broad.mit.edu	37	3	119886732	119886732	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:119886732G>A	uc011bjf.1	-	9	1592	c.1592C>T	c.(1591-1593)TCA>TTA	p.S531L	GPR156_uc011bjg.1_Missense_Mutation_p.S527L	NM_153002	NP_694547	Q8NFN8	GP156_HUMAN	G protein-coupled receptor 156	531	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.19)		GGGCTCCTCTGAGTTCTCCAG	0.582000													68	171					0	0	1	0	0
GPR156	165829	broad.mit.edu	37	3	119962576	119962576	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:119962576G>A	uc011bjf.1	-	2	144	c.144C>T	c.(142-144)GTC>GTT	p.V48V	GPR156_uc011bjg.1_Silent_p.V48V	NM_153002	NP_694547	Q8NFN8	GP156_HUMAN	G protein-coupled receptor 156	48	Helical; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.19)		TACCCAAGAGGACAGGAGATA	0.443000													37	27					0	0	1	0	0
SLC15A2	6565	broad.mit.edu	37	3	121659684	121659684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:121659684G>A	uc003eep.2	+	22	2173	c.2020G>A	c.(2020-2022)GAA>AAA	p.E674K	SLC15A2_uc011bjn.1_Missense_Mutation_p.E643K	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	674					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	GCAGTGGGCCGAATTCATTTT	0.473000													52	46					0	0	1	0	0
PARP15	165631	broad.mit.edu	37	3	122335957	122335957	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:122335957G>T	uc003efm.2	+	6	1012	c.946G>T	c.(946-948)GAA>TAA	p.E316*	PARP15_uc003efn.2_Nonsense_Mutation_p.E190*|PARP15_uc003efo.1_Nonsense_Mutation_p.E63*|PARP15_uc003efp.1_Nonsense_Mutation_p.E82*|PARP15_uc011bjt.1_Nonsense_Mutation_p.E82*	NM_001113523	NP_001106995	Q460N3	PAR15_HUMAN	poly (ADP-ribose) polymerase family, member 15	294	Macro 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	NAD+ ADP-ribosyltransferase activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)	5				GBM - Glioblastoma multiforme(114;0.0531)		TATAGCCACTGAACAGGTAGA	0.353000													4	137					1	1	1	1	0
PARP14	54625	broad.mit.edu	37	3	122422657	122422657	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:122422657C>T	uc003efq.3	+	7	3209	c.3150C>T	c.(3148-3150)CTC>CTT	p.L1050L	PARP14_uc010hrk.2_RNA|PARP14_uc003efr.2_Silent_p.L767L|PARP14_uc003efs.1_Silent_p.L767L	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	1050	Macro 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		CTAAGTCCCTCTTGGAAAAAG	0.478000													19	27					0	0	1	0	0
ITGB5	3693	broad.mit.edu	37	3	124567266	124567266	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:124567266C>T	uc003eho.2	-	4	798	c.501G>A	c.(499-501)GAG>GAA	p.E167E		NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	167	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		GCTTCCTCATCTCCTCCGCGA	0.527000													44	142					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	128580685	128580685	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:128580685G>A	uc011bkr.1	-	2	248	c.171C>T	c.(169-171)ATC>ATT	p.I57I						SubName: Full=cDNA FLJ53777, moderately similar to Intraflagellar transport 122 homolog;																		TGCTGGCTTTGATGTTGAGGT	0.572000													36	19					0	0	1	0	0
KIAA1257	57501	broad.mit.edu	37	3	128690270	128690271	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:128690270_128690271CC>TT	uc003elj.3	-	8	1223_1224	c.1027_1028GG>AA	c.(1027-1029)GGG>AAG	p.G343K	KIAA1257_uc003elg.1_Missense_Mutation_p.G343K|KIAA1257_uc003elh.1_5'UTR|KIAA1257_uc003eli.3_Missense_Mutation_p.G231K	NM_020741	NP_065792	Q9ULG3	K1257_HUMAN	hypothetical protein LOC57501	343											0						TGAATCTTTCCCTTTAACTGTG	0.485000													8	5					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130293331	130293331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:130293331G>A	uc010htl.2	+	7	3540	c.3509G>A	c.(3508-3510)AGG>AAG	p.R1170K		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1170	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GTCAATAAAAGGATCGTTCGC	0.448000													24	26					0	0	1	0	0
NCK1	4690	broad.mit.edu	37	3	136665000	136665000	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:136665000T>G	uc003erh.2	+	3	909	c.802T>G	c.(802-804)TAC>GAC	p.Y268D	NCK1_uc011bme.1_Missense_Mutation_p.Y204D	NM_006153	NP_006144	P16333	NCK1_HUMAN	NCK adaptor protein 1	268					axon guidance|positive regulation of actin filament polymerization|positive regulation of T cell proliferation|regulation of translation|signal complex assembly|T cell activation|T cell receptor signaling pathway	cytosol|endoplasmic reticulum|nucleus	cytoskeletal adaptor activity|receptor binding|receptor signaling complex scaffold activity			pancreas(1)	1						ACAGTGTGATTACATTAGGCC	0.408000													8	142					0	0	1	0	0
SOX14	8403	broad.mit.edu	37	3	137484037	137484037	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:137484037C>T	uc003erm.1	+	1	459	c.411C>T	c.(409-411)TCC>TCT	p.S137S		NM_004189	NP_004180	O95416	SOX14_HUMAN	SRY-box 14	137					negative regulation of transcription from RNA polymerase II promoter|nervous system development|transcription, DNA-dependent	nucleus	sequence-specific DNA binding				0						CGCCCTACTCCCTGCTGGACC	0.721000													8	15					0	0	1	0	0
DZIP1L	199221	broad.mit.edu	37	3	137790600	137790600	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:137790600C>T	uc003erq.2	-	12	1863	c.1500G>A	c.(1498-1500)CGG>CGA	p.R500R	DZIP1L_uc003err.1_Silent_p.R500R	NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	500						intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						CAGAAAACTTCCGGGCCTTCT	0.542000													51	30					0	0	1	0	0
PRR23B	389151	broad.mit.edu	37	3	138738948	138738948	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:138738948A>C	uc003esy.1	-	1	821	c.556T>G	c.(556-558)TTC>GTC	p.F186V		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	186										breast(1)	1						TAGGGGATGAACATACTTCTA	0.632000													3	114					0	0	1	0	0
TRIM42	287015	broad.mit.edu	37	3	140409855	140409855	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:140409855G>A	uc003eto.1	+	4	2097	c.1906G>A	c.(1906-1908)GAA>AAA	p.E636K		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	636	Fibronectin type-III.					intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						TTTTGAGATGGAATTCTATGA	0.418000													28	89					0	0	1	0	0
ZBTB38	253461	broad.mit.edu	37	3	141162801	141162801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:141162801C>T	uc003etw.2	+	8	2553	c.1571C>T	c.(1570-1572)ACT>ATT	p.T524I	ZBTB38_uc010hun.2_Missense_Mutation_p.T521I|ZBTB38_uc010huo.2_Missense_Mutation_p.T524I|ZBTB38_uc003ety.2_Missense_Mutation_p.T524I|ZBTB38_uc010hup.2_Missense_Mutation_p.T525I	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	524	C2H2-type 5.				positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						TGTCTTGAAACTTTCATGACC	0.383000													34	38					0	0	1	0	0
GRK7	131890	broad.mit.edu	37	3	141535834	141535834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:141535834G>A	uc011bnd.1	+	4	1688	c.1604G>A	c.(1603-1605)AGA>AAA	p.R535K		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	535					visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						GACCCCAACAGACCTACGGGT	0.463000													72	194					0	0	1	0	0
XRN1	54464	broad.mit.edu	37	3	142030475	142030475	+	Nonsense_Mutation	SNP	G	A	A	rs78926178		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:142030475G>A	uc003eus.2	-	42	5066	c.4999C>T	c.(4999-5001)CAA>TAA	p.Q1667*	XRN1_uc010huu.2_Nonsense_Mutation_p.Q1121*|XRN1_uc003eut.2_Nonsense_Mutation_p.Q1654*|XRN1_uc003euu.2_Nonsense_Mutation_p.Q1655*	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	1667					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						GTTTCAACTTGAAAAGAAGAT	0.418000													49	25					0	0	1	0	0
CP	1356	broad.mit.edu	37	3	148924065	148924065	+	Silent	SNP	G	A	A	rs117829763	by1000genomes	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:148924065G>A	uc003ewy.3	-	6	1351	c.1098C>T	c.(1096-1098)ATC>ATT	p.I366I	CP_uc011bnr.1_RNA|CP_uc003ewx.3_Silent_p.I147I|CP_uc003ewz.2_Silent_p.I366I|CP_uc010hvf.1_Silent_p.I92I	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	366					cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	GCTTCCCACGGATATTATCCT	0.413000													27	88					0	0	1	0	0
P2RY14	9934	broad.mit.edu	37	3	150931122	150931122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:150931122C>T	uc003eyr.1	-	3	1461	c.983G>A	c.(982-984)GGA>GAA	p.G328E	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron|P2RY14_uc003eys.1_Missense_Mutation_p.G328E	NM_001081455	NP_001074924	Q15391	P2Y14_HUMAN	P2Y14 receptor	328	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled|UDP-activated nucleotide receptor activity			large_intestine(2)|ovary(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TGTTGTATTTCCTCTTTTGAT	0.363000													41	51					0	0	1	0	0
GPR87	53836	broad.mit.edu	37	3	151012161	151012161	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:151012161G>A	uc003eyt.2	-	3	1234	c.873C>T	c.(871-873)ATC>ATT	p.I291I	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_023915	NP_076404	Q9BY21	GPR87_HUMAN	G protein-coupled receptor 87	291	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			large_intestine(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGTAATATAGGATTTTTTGTG	0.348000													25	53					0	0	1	0	0
AADACL2	344752	broad.mit.edu	37	3	151451863	151451863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:151451863C>T	uc003ezc.2	+	1	160	c.40C>T	c.(40-42)CTT>TTT	p.L14F	AADACL2_uc010hvn.2_5'UTR	NM_207365	NP_997248	Q6P093	ADCL2_HUMAN	arylacetamide deacetylase-like 2 precursor	14						extracellular region|integral to membrane	carboxylesterase activity				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			GCTTTGTGTTCTTTTTGTCTC	0.388000													19	11					0	0	1	0	0
GPR149	344758	broad.mit.edu	37	3	154146613	154146613	+	Silent	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:154146613A>G	uc003faa.2	-	1	892	c.792T>C	c.(790-792)TCT>TCC	p.S264S		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	264	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			AGCATCCCCCAGAGCGCCGCA	0.657000													47	31					0	0	1	0	0
SHOX2	6474	broad.mit.edu	37	3	157818074	157818074	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:157818074T>A	uc003fbr.2	-	3	721	c.582A>T	c.(580-582)AAA>AAT	p.K194N	SHOX2_uc003fbs.2_Missense_Mutation_p.K218N|SHOX2_uc010hvw.2_Missense_Mutation_p.K194N	NM_006884	NP_006875	O60902	SHOX2_HUMAN	short stature homeobox 2 isoform a	194	Homeobox.				nervous system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			Lung(72;0.00318)|LUSC - Lung squamous cell carcinoma(72;0.0043)			GTTTTCTACATTTAGCTCTTC	0.294000													26	68					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164776765	164776765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:164776765G>A	uc003fei.2	-	12	1446	c.1384C>T	c.(1384-1386)CCA>TCA	p.P462S		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	462	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CCAATAATTGGTGTACTTCCA	0.323000										HNSCC(35;0.089)			12	16					0	0	1	0	0
WDR49	151790	broad.mit.edu	37	3	167254736	167254736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:167254736C>T	uc003fev.1	-	7	1126	c.820G>A	c.(820-822)GAA>AAA	p.E274K	WDR49_uc003feu.1_Missense_Mutation_p.E99K|WDR49_uc011bpd.1_Missense_Mutation_p.E338K|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	274										large_intestine(1)|ovary(1)|skin(1)	3						TTCCATTCTTCAGGCTGGATG	0.388000													23	19					0	0	1	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169550948	169550948	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:169550948A>G	uc003fgb.2	+	4	1507	c.1507A>G	c.(1507-1509)AAC>GAC	p.N503D		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	503											0						GGAAAACAGAAACAGGAATAT	0.413000													11	13					0	0	1	0	0
TNIK	23043	broad.mit.edu	37	3	170828642	170828642	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:170828642C>T	uc003fhh.2	-	19	2490	c.2145G>A	c.(2143-2145)GAG>GAA	p.E715E	TNIK_uc003fhi.2_Silent_p.E660E|TNIK_uc003fhj.2_Silent_p.E686E|TNIK_uc003fhk.2_Silent_p.E715E|TNIK_uc003fhl.2_Silent_p.E631E|TNIK_uc003fhm.2_Silent_p.E660E|TNIK_uc003fhn.2_Silent_p.E686E|TNIK_uc003fho.2_Silent_p.E631E	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	715	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			CCAAGATGGGCTCAGTTCTCC	0.527000													4	20					0	0	1	0	0
PEX5L	51555	broad.mit.edu	37	3	179689405	179689405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:179689405C>T	uc003fki.1	-	2	200	c.70G>A	c.(70-72)GAA>AAA	p.E24K	PEX5L_uc011bqd.1_5'UTR|PEX5L_uc011bqe.1_5'UTR|PEX5L_uc011bqf.1_5'UTR|PEX5L_uc003fkj.1_Missense_Mutation_p.E24K|PEX5L_uc010hxd.1_Intron|PEX5L_uc011bqg.1_Intron|PEX5L_uc011bqh.1_Intron	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	24					protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			acaattatttcgaggtcttca	0.114000													10	14					0	0	1	0	0
YEATS2	55689	broad.mit.edu	37	3	183479380	183479380	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:183479380G>T	uc003fly.2	+	14	1937	c.1742G>T	c.(1741-1743)GGA>GTA	p.G581V		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	581					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			CCTATAACAGGAGGACTTGGA	0.438000													76	65					8.6838e-40	8.90482e-40	1	1	0
YEATS2	55689	broad.mit.edu	37	3	183491520	183491520	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:183491520C>A	uc003fly.2	+	17	2501	c.2306C>A	c.(2305-2307)TCA>TAA	p.S769*	YEATS2_uc003flz.2_5'Flank	NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	769					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			AAGAACCCTTCAGGAAAAGGA	0.463000													12	48					0.000219431	0.000220584	1	1	0
ABCC5	10057	broad.mit.edu	37	3	183700571	183700571	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:183700571G>A	uc003fmg.2	-	6	981	c.816C>T	c.(814-816)TCC>TCT	p.S272S	ABCC5_uc011bqt.1_5'UTR|ABCC5_uc010hxl.2_Silent_p.S272S	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	272	ABC transmembrane type-1 1.					integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			CCTCACCCAGGGATTTCTCTT	0.488000													11	45					0	0	1	0	0
VPS8	23355	broad.mit.edu	37	3	184689496	184689496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:184689496C>T	uc003fpb.1	+	39	3541	c.3370C>T	c.(3370-3372)CTT>TTT	p.L1124F	VPS8_uc010hyd.1_Missense_Mutation_p.L1034F|VPS8_uc010hye.1_Missense_Mutation_p.L553F	NM_015303	NP_056118	Q8N3P4	VPS8_HUMAN	vacuolar protein sorting 8 homolog isoform b	1126							zinc ion binding			ovary(1)	1	all_cancers(143;2.51e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.02e-33)|OV - Ovarian serous cystadenocarcinoma(80;4.81e-22)			GACCATTGCTCTTTGCCAGAG	0.338000													9	23					0	0	1	0	0
TPRG1	285386	broad.mit.edu	37	3	189038424	189038424	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:189038424T>C	uc003frv.1	+	11	1870	c.643T>C	c.(643-645)TTC>CTC	p.F215L	TPRG1_uc003frw.1_Missense_Mutation_p.F215L	NM_198485	NP_940887	Q6ZUI0	TPRG1_HUMAN	tumor protein p63 regulated 1	215											0	all_cancers(143;6.12e-12)|all_hematologic(3;0.0359)|Ovarian(172;0.0925)	all_lung(153;8.23e-09)|Lung NSC(153;3.55e-06)|all_neural(597;0.0019)|Myeloproliferative disorder(1037;0.0255)	Lung(62;6.93e-06)	GBM - Glioblastoma multiforme(93;4.77e-14)		GTTGTCTGGGTTCATGTCTAA	0.408000													3	22					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189612277	189612277	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:189612277G>A	uc003fry.2	+	14	2118	c.2029G>A	c.(2029-2031)GAG>AAG	p.E677K	TP63_uc003frz.2_3'UTR|TP63_uc010hzc.1_3'UTR|TP63_uc003fsc.2_Missense_Mutation_p.E583K|TP63_uc003fsd.2_3'UTR|TP63_uc010hzd.1_Missense_Mutation_p.E498K	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	677	Transactivation inhibition.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		GCGCATCAAAGAGGAGGGGGA	0.527000									Hay-Wells_syndrome	HNSCC(45;0.13)			36	31					0	0	1	0	0
OPA1	4976	broad.mit.edu	37	3	193374900	193374900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:193374900C>T	uc003ftm.2	+	21	2279	c.2045C>T	c.(2044-2046)TCC>TTC	p.S682F	OPA1_uc003ftg.2_Missense_Mutation_p.S737F|OPA1_uc003fth.2_Missense_Mutation_p.S701F|OPA1_uc003fti.2_Missense_Mutation_p.S719F|OPA1_uc003ftj.2_Missense_Mutation_p.S700F|OPA1_uc003ftk.2_Missense_Mutation_p.S683F|OPA1_uc003ftl.2_Missense_Mutation_p.S664F|OPA1_uc003ftn.2_Missense_Mutation_p.S646F	NM_015560	NP_056375	O60313	OPA1_HUMAN	optic atrophy 1 isoform 1	682	Mitochondrial intermembrane (By similarity).				apoptosis|axon transport of mitochondrion|inner mitochondrial membrane organization|mitochondrial fission|mitochondrial fusion|positive regulation of anti-apoptosis|response to stimulus|visual perception	dendrite|integral to membrane|mitochondrial crista|mitochondrial intermembrane space|mitochondrial outer membrane	GTP binding|GTPase activity|magnesium ion binding|protein binding				0	all_cancers(143;9.56e-09)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;9.19e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000162)		GAAGAATTTTCCCGCTTTATG	0.328000													10	31					0	0	1	0	0
RNF168	165918	broad.mit.edu	37	3	196198710	196198710	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:196198710A>G	uc003fwq.2	-	6	2234	c.1696T>C	c.(1696-1698)TTT>CTT	p.F566L	RNF168_uc010iah.2_Missense_Mutation_p.F399L|uc010iag.1_5'Flank	NM_152617	NP_689830	Q8IYW5	RN168_HUMAN	ring finger protein 168	566					double-strand break repair|histone H2A K63-linked ubiquitination|positive regulation of DNA repair|response to ionizing radiation	nucleus|ubiquitin ligase complex	chromatin binding|histone binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding				0	all_cancers(143;1e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;5.25e-24)|all cancers(36;5.47e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00348)		CATCTCTGAAACATCTGAAAA	0.403000													15	73					0	0	1	0	0
RNF168	165918	broad.mit.edu	37	3	196199271	196199272	+	Silent	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:196199271_196199272GG>AA	uc003fwq.2	-	6	1672_1673	c.1134_1135CC>TT	c.(1132-1137)TGCCTA>TGTTTA	p.378_379CL>CL	RNF168_uc010iah.2_Silent_p.211_212CL>CL|uc010iag.1_5'Flank	NM_152617	NP_689830	Q8IYW5	RN168_HUMAN	ring finger protein 168	378_379					double-strand break repair|histone H2A K63-linked ubiquitination|positive regulation of DNA repair|response to ionizing radiation	nucleus|ubiquitin ligase complex	chromatin binding|histone binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding				0	all_cancers(143;1e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;5.25e-24)|all cancers(36;5.47e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00348)		CTGATCAGTAGGCACGACTCTT	0.446000													45	109					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3182247	3182248	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:3182247_3182248CC>TT	uc011bvq.1	+	37	4769_4770	c.4624_4625CC>TT	c.(4624-4626)CCG>TTG	p.P1542L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1540					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CACAGCCATACCGGCTCTGCAG	0.421000													31	68					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3225781	3225781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:3225781C>T	uc011bvq.1	+	57	7839	c.7694C>T	c.(7693-7695)TCA>TTA	p.S2565L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2563					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GCAATGGTTTCAAAGAGAGAG	0.453000													139	137					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3241730	3241730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:3241730C>T	uc011bvq.1	+	68	9524	c.9379C>T	c.(9379-9381)CCA>TCA	p.P3127S		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	3125					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CCCAGGAAGCCCATATCACCG	0.607000													8	18					0	0	1	0	0
HGFAC	3083	broad.mit.edu	37	4	3445875	3445875	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:3445875G>A	uc003ghc.2	+	5	588	c.585G>A	c.(583-585)AAG>AAA	p.K195K	HGFAC_uc010icw.2_Silent_p.K195K	NM_001528	NP_001519	Q04756	HGFA_HUMAN	HGF activator preproprotein	195	EGF-like 1.				proteolysis	extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(2)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		TCACCGGCAAGGACTGCGGCA	0.687000													13	7					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6031493	6031493	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:6031493C>T	uc010idd.1	-	12	2094	c.1608G>A	c.(1606-1608)TGG>TGA	p.W536*	JAKMIP1_uc010idb.1_Missense_Mutation_p.E799K|JAKMIP1_uc010idc.1_Missense_Mutation_p.E614K	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	Error:Variant_position_missing_in_Q96N16_after_alignment					protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						AGTTTGTCCTCCAGTTCTCGG	0.383000													6	6					0	0	1	0	0
MAN2B2	23324	broad.mit.edu	37	4	6596334	6596334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:6596334G>A	uc003gjf.1	+	7	968	c.932G>A	c.(931-933)AGC>AAC	p.S311N	MAN2B2_uc003gje.1_Missense_Mutation_p.S311N|MAN2B2_uc011bwf.1_Intron	NM_015274	NP_056089	Q9Y2E5	MA2B2_HUMAN	mannosidase, alpha, class 2B, member 2	311					mannose metabolic process	extracellular region	alpha-mannosidase activity|carbohydrate binding|zinc ion binding			ovary(2)	2						CACATCAACAGCCATGCTGCC	0.602000													91	92					0	0	1	0	0
SORCS2	57537	broad.mit.edu	37	4	7725482	7725482	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:7725482A>G	uc003gkb.3	+	19	2483	c.2483A>G	c.(2482-2484)TAC>TGC	p.Y828C	SORCS2_uc011bwi.1_Missense_Mutation_p.Y656C	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	828	PKD.|Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						AAGGCCATGTACGTGAACCTT	0.607000													152	237					0	0	1	0	0
SH3TC1	54436	broad.mit.edu	37	4	8242577	8242577	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:8242577G>A	uc003gkv.3	+	18	4007	c.3906G>A	c.(3904-3906)CAG>CAA	p.Q1302Q	SH3TC1_uc003gkw.3_Silent_p.Q1226Q|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_RNA	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	1302	TPR 9.						binding			large_intestine(2)|pancreas(1)	3						TCTTCTACCAGAAGGCCAGGA	0.622000													82	76					0	0	1	0	0
CPZ	8532	broad.mit.edu	37	4	8609072	8609072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:8609072G>A	uc003glm.2	+	7	1273	c.1147G>A	c.(1147-1149)GAC>AAC	p.D383N	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Missense_Mutation_p.D246N|CPZ_uc003glo.2_Missense_Mutation_p.D372N|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	383					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						TCATGGGGGCGACCTGGTGGT	0.607000											OREG0016100	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	86	90					0	0	1	0	0
SLC2A9	56606	broad.mit.edu	37	4	9836604	9836604	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:9836604C>T	uc003gmc.2	-	11	1381	c.1320G>A	c.(1318-1320)GAG>GAA	p.E440E	SLC2A9_uc003gmd.2_Silent_p.E411E	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	440	Cytoplasmic (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						GCTGGAAGAACTCACCAGTCA	0.532000													53	73					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20525458	20525458	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:20525458C>T	uc003gpr.1	+	13	1410	c.1206C>T	c.(1204-1206)TCC>TCT	p.S402S	SLIT2_uc003gps.1_Silent_p.S402S	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	402	LRR 11.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						ACCTTCTCTCCCTATATGACA	0.398000													98	107					0	0	1	0	0
ANAPC4	29945	broad.mit.edu	37	4	25379139	25379139	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:25379139C>T	uc003gro.2	+	2	219	c.90C>T	c.(88-90)CCC>CCT	p.P30P		NM_013367	NP_037499	Q9UJX5	APC4_HUMAN	anaphase-promoting complex subunit 4	30					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5		Breast(46;0.0503)				TCTGGTCGCCCAAGCGGGATC	0.637000													17	37					0	0	1	0	0
SLC34A2	10568	broad.mit.edu	37	4	25678354	25678354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:25678354G>A	uc003grr.2	+	13	2137	c.2056G>A	c.(2056-2058)GAA>AAA	p.E686K	SLC34A2_uc003grs.2_Missense_Mutation_p.E685K|SLC34A2_uc010iev.2_Missense_Mutation_p.E685K	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	686	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				CTCAAAGACCGAATGCACGGC	0.572000													40	117					0	0	1	0	0
TBC1D1	23216	broad.mit.edu	37	4	37903866	37903866	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:37903866C>T	uc003gtb.2	+	2	493	c.150C>T	c.(148-150)CTC>CTT	p.L50L	TBC1D1_uc011byd.1_Silent_p.L50L|TBC1D1_uc010ifd.2_Silent_p.L50L	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	50						nucleus	Rab GTPase activator activity			ovary(1)	1						TGCGAAGACTCAGCAGGCAGT	0.582000													67	102					0	0	1	0	0
TBC1D1	23216	broad.mit.edu	37	4	38051328	38051328	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:38051328G>A	uc003gtb.2	+	11	2062	c.1719G>A	c.(1717-1719)TCG>TCA	p.S573S	TBC1D1_uc011byd.1_Silent_p.S573S|TBC1D1_uc010ifd.2_Silent_p.S320S|TBC1D1_uc011byf.1_Silent_p.S444S	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	573						nucleus	Rab GTPase activator activity			ovary(1)	1						CCAGTGACTCGGAGAGTCATC	0.592000													87	75					0	0	1	0	0
RBM47	54502	broad.mit.edu	37	4	40440590	40440590	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:40440590G>A	uc003gvc.2	-	4	1031	c.321C>T	c.(319-321)GAC>GAT	p.D107D	RBM47_uc003gvd.2_Silent_p.D107D|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Silent_p.D69D|RBM47_uc003gvg.1_Silent_p.D107D	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	107	RRM 1.					nucleus	nucleotide binding|RNA binding			breast(3)	3						GGTTCTTGCCGTCAAAGTCCA	0.647000													125	113					0	0	1	0	0
APBB2	323	broad.mit.edu	37	4	41015685	41015685	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:41015685G>A	uc003gvl.2	-	6	1380	c.750C>T	c.(748-750)ATC>ATT	p.I250I	APBB2_uc003gvm.2_Silent_p.I250I|APBB2_uc003gvn.2_Silent_p.I250I|APBB2_uc011byt.1_Silent_p.I233I	NM_173075	NP_775098	Q92870	APBB2_HUMAN	amyloid beta A4 precursor protein-binding,	250					cell cycle arrest|intracellular signal transduction|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|regulation of transcription, DNA-dependent	growth cone|lamellipodium|membrane|nucleus|synapse	beta-amyloid binding|transcription factor binding			ovary(2)|large_intestine(1)	3						CCAGGTTCTGGATCCGGTGCA	0.587000													328	266					0	0	1	0	0
SLC30A9	10463	broad.mit.edu	37	4	42062260	42062260	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:42062260A>G	uc003gwl.2	+	10	1039	c.893A>G	c.(892-894)CAT>CGT	p.H298R	SLC30A9_uc011byx.1_Missense_Mutation_p.H58R	NM_006345	NP_006336	Q6PML9	ZNT9_HUMAN	solute carrier family 30 (zinc transporter),	298					nucleotide-excision repair|zinc ion transport	cytoskeleton|integral to membrane|nucleus	cation transmembrane transporter activity|nucleotide binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3						GATCCTTCTCATCCGTAAGGA	0.333000													53	152					0	0	1	0	0
ATP10D	57205	broad.mit.edu	37	4	47570941	47570941	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:47570941G>A	uc003gxk.1	+	16	3105	c.2941G>A	c.(2941-2943)GAT>AAT	p.D981N	ATP10D_uc003gxl.1_Missense_Mutation_p.D229N	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	981	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						ATTAAGTGAAGATTTACTTCA	0.478000													68	97					0	0	1	0	0
CORIN	10699	broad.mit.edu	37	4	47655579	47655579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:47655579C>T	uc003gxm.2	-	13	1927	c.1834G>A	c.(1834-1836)GAA>AAA	p.E612K	CORIN_uc011bzf.1_Missense_Mutation_p.E473K|CORIN_uc011bzg.1_Missense_Mutation_p.E545K|CORIN_uc011bzh.1_Missense_Mutation_p.E575K	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	612	Extracellular (Potential).|LDL-receptor class A 5.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						CCACAGTTTTCCTCATCACTG	0.408000													38	74					0	0	1	0	0
CWH43	80157	broad.mit.edu	37	4	49005925	49005925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:49005925G>A	uc003gyv.2	+	7	1158	c.976G>A	c.(976-978)GAA>AAA	p.E326K	CWH43_uc011bzl.1_Missense_Mutation_p.E299K	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	326	Helical; (Potential).				GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						TTATCTTCTAGAAATATTTTT	0.423000													22	32					0	0	1	0	0
SCFD2	152579	broad.mit.edu	37	4	54231935	54231935	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:54231935C>A	uc003gzu.2	-	1	308	c.174G>T	c.(172-174)GAG>GAT	p.E58D	SCFD2_uc010igm.2_Missense_Mutation_p.E58D	NM_152540	NP_689753	Q8WU76	SCFD2_HUMAN	sec1 family domain containing 2	58					protein transport|vesicle docking involved in exocytosis					ovary(2)|pancreas(1)	3			GBM - Glioblastoma multiforme(3;1.07e-26)|LUSC - Lung squamous cell carcinoma(32;0.0134)			CGGGCTCGAACTCTCGCAGGT	0.652000													99	104					9.42799e-54	9.7135e-54	1	1	0
LNX1	84708	broad.mit.edu	37	4	54439943	54439943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:54439943G>A	uc003hag.3	-	2	483	c.227C>T	c.(226-228)CCC>CTC	p.P76L	PDGFRA_uc003haa.2_Intron|LNX1_uc003hah.3_RNA	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	76	RING-type.					cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			GCGGTCCATGGGACAGAAGTC	0.572000													13	22					0	0	1	0	0
KIAA1211	57482	broad.mit.edu	37	4	57182408	57182408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:57182408C>T	uc003hbk.2	+	8	3131	c.2740C>T	c.(2740-2742)CCT>TCT	p.P914S	KIAA1211_uc010iha.2_Missense_Mutation_p.P907S|KIAA1211_uc011bzz.1_Missense_Mutation_p.P824S|KIAA1211_uc003hbm.1_Missense_Mutation_p.P800S	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	914										ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					GAAGCAAGCCCCTTCCACCCG	0.687000													33	27					0	0	1	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68784789	68784789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:68784789G>A	uc003hdr.1	-	8	984	c.863C>T	c.(862-864)TCG>TTG	p.S288L	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Missense_Mutation_p.S285L	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	288	Peptidase S1.|Extracellular (Potential).			S -> P (in Ref. 1; AAD41463).	cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						TATGTCATCCGAAAAGGTGAC	0.443000													35	111					0	0	1	0	0
UGT2B10	7365	broad.mit.edu	37	4	69681841	69681841	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:69681841G>A	uc003hee.2	+	1	129	c.104G>A	c.(103-105)TGG>TAG	p.W35*	UGT2B10_uc011cam.1_Nonsense_Mutation_p.W35*	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	35					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TACAGCCTTTGGATGAATATG	0.443000													34	40					0	0	1	0	0
UGT2B4	7363	broad.mit.edu	37	4	70350930	70350930	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:70350930G>A	uc003hek.3	-	5	1353	c.1306C>T	c.(1306-1308)CCT>TCT	p.P436S	UGT2B4_uc011cap.1_Missense_Mutation_p.P300S|UGT2B4_uc003hel.3_Intron	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	436					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						ACTCACAAAGGATCATTAATT	0.378000													52	66					0	0	1	0	0
SMR3B	10879	broad.mit.edu	37	4	71255502	71255502	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:71255502C>T	uc011cas.1	+	3	258	c.177C>T	c.(175-177)ATC>ATT	p.I59I	SMR3B_uc003hfh.2_Silent_p.I59I	NM_006685	NP_006676	P02814	SMR3B_HUMAN	submaxillary gland androgen regulated protein 3	59	Pro-rich.					extracellular space				skin(1)	1		all_hematologic(202;0.196)				CAGGGAGAATCCCACCTCCTC	0.597000													55	112					0	0	1	0	0
MUC7	4589	broad.mit.edu	37	4	71347185	71347185	+	Missense_Mutation	SNP	T	C	C	rs79807294	by1000genomes	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:71347185T>C	uc011cat.1	+	4	1012	c.724T>C	c.(724-726)TCT>CCT	p.S242P	MUC7_uc011cau.1_Missense_Mutation_p.S242P|MUC7_uc003hfj.2_Missense_Mutation_p.S242P|uc011cav.1_Intron	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	242	Thr-rich.|4.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			ACCCACACCTTCTGCAACTAC	0.592000													5	295					0	0	1	0	0
ALB	213	broad.mit.edu	37	4	74283914	74283914	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:74283914C>T	uc003hgs.3	+	12	1611	c.1538C>T	c.(1537-1539)TCA>TTA	p.S513L	ALB_uc003hgw.3_Missense_Mutation_p.S321L|ALB_uc011cbe.1_Missense_Mutation_p.S192L|ALB_uc003hgt.3_Missense_Mutation_p.S513L|ALB_uc010iii.2_Missense_Mutation_p.S398L|ALB_uc003hgu.3_Missense_Mutation_p.S363L|ALB_uc003hgv.3_Missense_Mutation_p.S192L|ALB_uc011cbf.1_Missense_Mutation_p.S403L|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_Missense_Mutation_p.S192L	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	513	Albumin 3.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	CCATGCTTTTCAGCTCTGGAA	0.443000													43	33					0	0	1	0	0
AFP	174	broad.mit.edu	37	4	74319582	74319583	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:74319582_74319583GG>AA	uc003hgz.1	+	13	1800_1801	c.1753_1754GG>AA	c.(1753-1755)GGC>AAC	p.G585N	AFP_uc003hha.1_Missense_Mutation_p.G585N|AFP_uc011cbg.1_Missense_Mutation_p.G359N	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	585	Albumin 3.				transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			ATGCTGCCAAGGCCAGGAACAG	0.421000									Alpha-Fetoprotein_Hereditary_Persistence_of				19	45					0	0	1	0	0
PARM1	25849	broad.mit.edu	37	4	75938336	75938336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:75938336G>A	uc003hih.1	+	2	985	c.745G>A	c.(745-747)GAA>AAA	p.E249K		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	249	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						GATCATGCAGGAAGTAGAACA	0.463000													14	54					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77660215	77660215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:77660215G>A	uc011cbx.1	+	5	1842	c.889G>A	c.(889-891)GAA>AAA	p.E297K	SHROOM3_uc011cbz.1_Missense_Mutation_p.E121K|SHROOM3_uc003hkf.1_Missense_Mutation_p.E172K|SHROOM3_uc003hkg.2_Missense_Mutation_p.E75K	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	297					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			TGGCCTCCTCGAAGGGATGAG	0.557000													40	71					0	0	1	0	0
GK2	2712	broad.mit.edu	37	4	80329126	80329126	+	Missense_Mutation	SNP	C	T	T	rs149134428		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:80329126C>T	uc003hlu.2	-	1	247	c.229G>A	c.(229-231)GAA>AAA	p.E77K		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	77					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						ATATTCAGTTCGTCAAGTTTC	0.418000													116	104					0	0	1	0	0
C4orf22	255119	broad.mit.edu	37	4	81791162	81791162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:81791162C>T	uc003hmf.2	+	4	398	c.349C>T	c.(349-351)CGT>TGT	p.R117C	C4orf22_uc010ijp.2_Missense_Mutation_p.R134C	NM_152770	NP_689983	Q6V702	CD022_HUMAN	hypothetical protein LOC255119	117										skin(2)	2						GATCTTTATTCGTGACAGAAA	0.358000													30	46					0	0	1	0	0
THAP9	79725	broad.mit.edu	37	4	83839611	83839611	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:83839611T>C	uc003hnt.2	+	5	2365	c.2246T>C	c.(2245-2247)ATT>ACT	p.I749T	THAP9_uc003hns.1_Missense_Mutation_p.I605T|THAP9_uc003hnu.1_RNA|THAP9_uc003hnv.2_Missense_Mutation_p.I466T	NM_024672	NP_078948	Q9H5L6	THAP9_HUMAN	THAP domain containing 9	749							DNA binding|metal ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	5		Hepatocellular(203;0.114)				GCCTCTAAAATTGGGTCACTA	0.378000													32	39					0	0	1	0	0
WDFY3	23001	broad.mit.edu	37	4	85612913	85612913	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:85612913G>A	uc003hpd.2	-	60	9483	c.9075C>T	c.(9073-9075)ATC>ATT	p.I3025I	WDFY3_uc003hpe.1_Silent_p.I636I	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	3025						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		CTGTACATACGATTTGTCCTA	0.373000													14	30					0	0	1	0	0
MMRN1	22915	broad.mit.edu	37	4	90816721	90816721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:90816721C>T	uc003hst.2	+	1	670	c.599C>T	c.(598-600)TCA>TTA	p.S200L	MMRN1_uc010iku.2_Missense_Mutation_p.S166L	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	200					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		TACCAAAAATCAAATTTCGAA	0.373000													16	17					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	94032105	94032105	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:94032105G>A	uc011cdt.1	+	4	993	c.735_splice	c.e4+1	p.E245_splice	GRID2_uc010ikx.2_Splice_Site_p.E245_splice|GRID2_uc011cdu.1_Splice_Site_p.E150_splice|GRID2_uc011cdv.1_Splice_Site	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2						glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	CATTACTGAGGTAAGTGAAAA	0.413000													33	30					0	0	1	0	0
SEC24B	10427	broad.mit.edu	37	4	110451555	110451555	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:110451555T>G	uc003hzk.2	+	19	3242	c.3187T>G	c.(3187-3189)TCT>GCT	p.S1063A	SEC24B_uc003hzl.2_Missense_Mutation_p.S1028A|SEC24B_uc011cfp.1_Missense_Mutation_p.S1093A|SEC24B_uc011cfq.1_Missense_Mutation_p.S1062A|SEC24B_uc011cfr.1_Missense_Mutation_p.S1027A	NM_006323	NP_006314	O95487	SC24B_HUMAN	SEC24 (S. cerevisiae) homolog B isoform a	1063					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|transporter activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.03e-05)		TTTACAGCACTCTGCATTGAT	0.418000													25	67					0	0	1	0	0
ALPK1	80216	broad.mit.edu	37	4	113350325	113350325	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:113350325C>A	uc003iap.3	+	10	1095	c.816C>A	c.(814-816)GAC>GAA	p.D272E	ALPK1_uc003ian.3_Missense_Mutation_p.D272E|ALPK1_uc011cfx.1_Missense_Mutation_p.D194E|ALPK1_uc003iao.3_RNA|ALPK1_uc010imo.2_Missense_Mutation_p.D100E	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	272							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		AGGAGTTTGACCACCATTTGC	0.493000													84	191					3.86339e-31	3.94587e-31	1	1	0
ALPK1	80216	broad.mit.edu	37	4	113353703	113353703	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:113353703G>A	uc003iap.3	+	11	3279	c.3000G>A	c.(2998-3000)GGG>GGA	p.G1000G	ALPK1_uc003ian.3_Silent_p.G1000G|ALPK1_uc011cfx.1_Silent_p.G922G|ALPK1_uc003iao.3_Intron|ALPK1_uc010imo.2_Silent_p.G828G	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	1000							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		AGAATACGGGGGTTTTTAAGC	0.488000													83	59					0	0	1	0	0
PLK4	10733	broad.mit.edu	37	4	128819638	128819638	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:128819638T>C	uc003ifo.2	+	16	3100	c.2855T>C	c.(2854-2856)TTA>TCA	p.L952S	PLK4_uc011cgs.1_Missense_Mutation_p.L920S|PLK4_uc011cgt.1_Missense_Mutation_p.L911S	NM_014264	NP_055079	O00444	PLK4_HUMAN	polo-like kinase 4	952	POLO box.				G2/M transition of mitotic cell cycle|positive regulation of centriole replication|trophoblast giant cell differentiation	centriole|cleavage furrow|cytosol|nucleolus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						AAACAGAAATTACAGTGTCTG	0.294000													3	130					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138450896	138450896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:138450896G>A	uc003ihe.3	-	1	2734	c.2347C>T	c.(2347-2349)CCT>TCT	p.P783S	PCDH18_uc003ihf.3_Missense_Mutation_p.P776S|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.P563S|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	783	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TCTAAGGTAGGAGATGAAGAT	0.507000													9	43					0	0	1	0	0
RNF150	57484	broad.mit.edu	37	4	142053555	142053555	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:142053555G>A	uc003iio.1	-	1	1062	c.408C>T	c.(406-408)TTC>TTT	p.F136F	RNF150_uc010iok.1_Silent_p.F136F|RNF150_uc003iip.1_Silent_p.F136F	NM_020724	NP_065775	Q9ULK6	RN150_HUMAN	ring finger protein 150 precursor	136	Extracellular (Potential).|PA.					integral to membrane	zinc ion binding			ovary(1)	1	all_hematologic(180;0.162)					CGTTCTGCAGGAACGCGTTCC	0.642000													12	12					0	0	1	0	0
MAB21L2	10586	broad.mit.edu	37	4	151504274	151504274	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:151504274C>T	uc003ilw.2	+	1	1198	c.93C>T	c.(91-93)ATC>ATT	p.I31I	LRBA_uc003ils.3_5'Flank|LRBA_uc003ilt.3_Intron|LRBA_uc003ilu.3_Intron|LRBA_uc010ipj.2_Intron	NM_006439	NP_006430	Q9Y586	MB212_HUMAN	mab-21-like protein 2	31					nervous system development	nucleus				ovary(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.159)		CCAAAACCATCCGAGAGGTCT	0.592000													30	19					0	0	1	0	0
LRBA	987	broad.mit.edu	37	4	151788952	151788952	+	Silent	SNP	C	T	T	rs138956153	byFrequency	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:151788952C>T	uc010ipj.2	-	22	3111	c.2637G>A	c.(2635-2637)AAG>AAA	p.K879K	LRBA_uc003ilu.3_Silent_p.K879K	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	879						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					CATCTGAATTCTTAGGATTAA	0.403000													75	64					0	0	1	0	0
SH3D19	152503	broad.mit.edu	37	4	152095957	152095957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:152095957G>A	uc010ipl.1	-	7	1649	c.559C>T	c.(559-561)CCA>TCA	p.P187S	SH3D19_uc003imc.2_Missense_Mutation_p.P187S|SH3D19_uc003ime.2_Missense_Mutation_p.P187S|SH3D19_uc010ipm.2_Missense_Mutation_p.P187S	NM_001009555	NP_001009555	Q5HYK7	SH319_HUMAN	SH3 domain containing 19 isoform a	187	Pro-rich.				cellular membrane organization|positive regulation of membrane protein ectodomain proteolysis|post-Golgi vesicle-mediated transport	cytosol|Golgi apparatus|nucleus|plasma membrane	proline-rich region binding			ovary(1)|skin(1)	2	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				GGGTTGGCTGGGGGCCCTTCT	0.572000													196	406					0	0	1	0	0
LRAT	9227	broad.mit.edu	37	4	155665896	155665896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:155665896G>A	uc003iom.1	+	1	745	c.418G>A	c.(418-420)GAG>AAG	p.E140K	uc003iol.2_Intron|LRAT_uc003ion.1_Missense_Mutation_p.E140K	NM_004744	NP_004735	O95237	LRAT_HUMAN	lecithin retinol acyltransferase	140	Cytoplasmic (By similarity).				response to stimulus|retinoid metabolic process|steroid metabolic process|visual perception	endoplasmic reticulum membrane|integral to membrane|multivesicular body|perinuclear region of cytoplasm|rough endoplasmic reticulum	phosphatidylcholine-retinol O-acyltransferase activity			central_nervous_system(1)	1	all_hematologic(180;0.215)	Renal(120;0.0458)			Vitamin A(DB00162)	GCTCAACGAGGAGGTGGCGCG	0.587000													62	58					0	0	1	0	0
TMEM144	55314	broad.mit.edu	37	4	159162704	159162704	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:159162704G>A	uc003ipx.2	+	11	1366	c.846G>A	c.(844-846)TGG>TGA	p.W282*	TMEM144_uc010iqi.2_RNA	NM_018342	NP_060812	Q7Z5S9	TM144_HUMAN	transmembrane protein 144	282	Helical; (Potential).					integral to membrane					0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0539)		CCTGCTGTTGGTTCATAGCAA	0.403000													72	170					0	0	1	0	0
AADAT	51166	broad.mit.edu	37	4	171009587	171009587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:171009587C>T	uc003isr.2	-	2	538	c.196G>A	c.(196-198)GAG>AAG	p.E66K	AADAT_uc003iss.2_Missense_Mutation_p.E66K|AADAT_uc003ist.2_Missense_Mutation_p.E70K	NM_016228	NP_057312	Q8N5Z0	AADAT_HUMAN	kynurenine aminotransferase II	66					2-oxoglutarate metabolic process|biosynthetic process|glutamate metabolic process|lysine catabolic process	mitochondrial matrix	2-aminoadipate transaminase activity|kynurenine-oxoglutarate transaminase activity|protein homodimerization activity				0		Prostate(90;0.00601)|Renal(120;0.0183)|all_neural(102;0.122)|Melanoma(52;0.17)		GBM - Glioblastoma multiforme(119;0.0355)|LUSC - Lung squamous cell carcinoma(193;0.118)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	TTCATCATCTCTTCTCCAAAT	0.373000													56	63					0	0	1	0	0
MORF4	10934	broad.mit.edu	37	4	174537626	174537626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:174537626C>T	uc011cke.1	-	1	169	c.169G>A	c.(169-171)GAA>AAA	p.E57K		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		TCCTCATTTTCAACAGTAGGA	0.433000													22	55					0	0	1	0	0
FAM92A3	403315	broad.mit.edu	37	4	183959248	183959248	+	RNA	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:183959248G>A	uc003ivi.3	+	1		c.431G>A				NR_003612				Homo sapiens family with sequence similarity 92, member A3, mRNA (cDNA clone IMAGE:4822144).												0						AAATGAAACGGGATGACCCCA	0.428000													10	9					0	0	1	0	0
ENPP6	133121	broad.mit.edu	37	4	185039047	185039047	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:185039047G>A	uc003iwc.2	-	4	682	c.540C>T	c.(538-540)GGC>GGT	p.G180G		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	180	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		GGTCGGCCCGGCCACTCCTGG	0.617000													15	31					0	0	1	0	0
NDUFS6	4726	broad.mit.edu	37	5	1816024	1816024	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:1816024C>G	uc003jcy.2	+	4	392	c.369C>G	c.(367-369)CAC>CAG	p.H123Q		NM_004553	NP_004544	O75380	NDUS6_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 6,	123					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	electron carrier activity|NADH dehydrogenase (ubiquinone) activity			central_nervous_system(1)	1					NADH(DB00157)	GACAGCACCACCACTAGAGCG	0.522000													9	248					0	0	1	0	0
ADCY2	108	broad.mit.edu	37	5	7773063	7773063	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:7773063A>G	uc003jdz.1	+	18	2300	c.2233A>G	c.(2233-2235)ATT>GTT	p.I745V	ADCY2_uc011cmo.1_Missense_Mutation_p.I565V	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	745	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						CTACAGCTGCATTCTGGGACT	0.468000													44	270					0	0	1	0	0
SEMA5A	9037	broad.mit.edu	37	5	9043098	9043099	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:9043098_9043099CC>TT	uc003jek.2	-	23	3847_3848	c.3135_3136GG>AA	c.(3133-3138)GAGGAA>GAAAAA	p.E1046K		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	1046	Cytoplasmic (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						TTGTTTCTTTCCTCTAGGATCA	0.317000													20	16					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	11117644	11117644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:11117644C>T	uc003jfa.1	-	13	2340	c.2195G>A	c.(2194-2196)AGG>AAG	p.R732K	CTNND2_uc010itt.2_Missense_Mutation_p.R641K|CTNND2_uc011cmy.1_Missense_Mutation_p.R395K|CTNND2_uc011cmz.1_Missense_Mutation_p.R299K|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.R299K	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	732	ARM 6.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CTCTCTCATCCTTCTGCGGGC	0.532000													56	85					0	0	1	0	0
TRIO	7204	broad.mit.edu	37	5	14291101	14291101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:14291101G>A	uc003jff.2	+	5	823	c.817G>A	c.(817-819)GAG>AAG	p.E273K	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Missense_Mutation_p.E224K|TRIO_uc003jfh.1_5'Flank	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	273					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					GGCCCCCATCGAGGACCTGGA	0.507000													42	56					0	0	1	0	0
CDH12	1010	broad.mit.edu	37	5	21842282	21842282	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:21842282G>A	uc010iuc.2	-	5	1260	c.802C>T	c.(802-804)CGA>TGA	p.R268*	CDH12_uc011cno.1_Nonsense_Mutation_p.R228*|CDH12_uc003jgk.2_Nonsense_Mutation_p.R268*	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	268	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TTGGGGAATCGAGGTGGATTG	0.403000										HNSCC(59;0.17)			78	91					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23527136	23527136	+	Missense_Mutation	SNP	C	T	T	rs113723046		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:23527136C>T	uc003jgo.2	+	11	2121	c.1939C>T	c.(1939-1941)CGG>TGG	p.R647W		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	647	C2H2-type 6.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						GGGCTTTAGCCGGCAGTCAGT	0.622000										HNSCC(3;0.000094)			5	42					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23527251	23527251	+	Missense_Mutation	SNP	C	G	G	rs111488757		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:23527251C>G	uc003jgo.2	+	11	2236	c.2054C>G	c.(2053-2055)ACA>AGA	p.T685R		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	685	C2H2-type 7.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CACCAGAGGACACACACAGGG	0.602000										HNSCC(3;0.000094)			4	108					0	0	1	0	0
CDH9	1007	broad.mit.edu	37	5	26881634	26881634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:26881634C>T	uc003jgs.1	-	12	2150	c.1981G>A	c.(1981-1983)GAT>AAT	p.D661N	CDH9_uc011cnv.1_Missense_Mutation_p.D254N	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	661	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						CCGCCTTCATCGTTGTAGGTC	0.438000													51	66					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31302346	31302346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:31302346G>A	uc003jhe.1	+	6	1266	c.940G>A	c.(940-942)GAT>AAT	p.D314N	CDH6_uc003jhd.1_Missense_Mutation_p.D314N	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	314	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						TGAGGGGCTGGATATGTTTGA	0.473000													44	60					0	0	1	0	0
AGXT2	64902	broad.mit.edu	37	5	35010230	35010230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:35010230C>T	uc003jjf.2	-	12	1292	c.1213G>A	c.(1213-1215)GAA>AAA	p.E405K	AGXT2_uc003jje.1_Missense_Mutation_p.E58K|AGXT2_uc011com.1_Missense_Mutation_p.E330K	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	405					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	TGACTGTTTTCCTGTAGATTT	0.398000													67	63					0	0	1	0	0
PRLR	5618	broad.mit.edu	37	5	35086398	35086398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:35086398G>A	uc003jjm.2	-	4	645	c.115C>T	c.(115-117)CCC>TCC	p.P39S	PRLR_uc003jjg.1_Missense_Mutation_p.P39S|PRLR_uc003jjh.1_Missense_Mutation_p.P39S|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Missense_Mutation_p.P39S|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Intron|PRLR_uc010iuw.1_5'UTR	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	39	Fibronectin type-III 1.|Extracellular (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TCCTTATTGGGAGAACGACAT	0.453000													40	48					0	0	1	0	0
IL7R	3575	broad.mit.edu	37	5	35857148	35857148	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:35857148C>T	uc003jjs.2	+	1	158	c.69C>T	c.(67-69)GGC>GGT	p.G23G	IL7R_uc011coo.1_Silent_p.G23G|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	23	Extracellular (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			GAGAAAGTGGCTATGCTCAAA	0.318000													44	81					0	0	1	0	0
NUP155	9631	broad.mit.edu	37	5	37299634	37299634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:37299634C>T	uc003jku.1	-	31	3716	c.3598G>A	c.(3598-3600)GAG>AAG	p.E1200K	NUP155_uc003jkt.1_Missense_Mutation_p.E1141K|NUP155_uc010iuz.1_Missense_Mutation_p.E1136K	NM_153485	NP_705618	O75694	NU155_HUMAN	nucleoporin 155kDa isoform 1	1200					carbohydrate metabolic process|glucose transport|mRNA transport|nucleocytoplasmic transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore|transporter activity			ovary(1)	1	all_lung(31;0.000137)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGTTTGCACTCTGCAAGTTTA	0.368000													52	72					0	0	1	0	0
FYB	2533	broad.mit.edu	37	5	39202484	39202484	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:39202484G>A	uc003jls.2	-	1	646	c.579C>T	c.(577-579)TTC>TTT	p.F193F	FYB_uc003jlt.2_Silent_p.F193F|FYB_uc003jlu.2_Silent_p.F193F|FYB_uc011cpl.1_Silent_p.F203F	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	193					cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			CGGGTTTGGGGAAGAGGGGCT	0.493000													33	42					0	0	1	0	0
C7	730	broad.mit.edu	37	5	40981663	40981663	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:40981663G>A	uc003jmh.2	+	18	2634	c.2520G>A	c.(2518-2520)GCG>GCA	p.A840A		NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	840	Complement control factor I module 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				CTTGTGCTGCGGAAACCCAGT	0.587000													8	13					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41064604	41064604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:41064604C>T	uc003jmj.3	-	5	920	c.430G>A	c.(430-432)GAT>AAT	p.D144N		NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	144							binding			ovary(6)|central_nervous_system(2)	8						ATCCTTTCATCCTCGGCCAGC	0.463000													19	41					0	0	1	0	0
GHR	2690	broad.mit.edu	37	5	42719193	42719193	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:42719193C>T	uc003jmt.2	+	10	1627	c.1584C>T	c.(1582-1584)TTC>TTT	p.F528F	GHR_uc011cpq.1_Silent_p.F341F	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	528	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	AAGAAAACTTCCTTATGGACA	0.498000													29	45					0	0	1	0	0
GHR	2690	broad.mit.edu	37	5	42719292	42719292	+	Silent	SNP	C	T	T	rs139272745	byFrequency	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:42719292C>T	uc003jmt.2	+	10	1726	c.1683C>T	c.(1681-1683)AAC>AAT	p.N561N	GHR_uc011cpq.1_Silent_p.N374N	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	561	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	CAAGCTTAAACCAAGAGGACA	0.498000													12	32					0	0	1	0	0
EMB	133418	broad.mit.edu	37	5	49699045	49699045	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:49699045C>T	uc003jom.2	-	6	1093	c.844G>A	c.(844-846)GAA>AAA	p.E282K	EMB_uc010ivq.2_Missense_Mutation_p.E76K|EMB_uc003jol.2_Missense_Mutation_p.E213K|EMB_uc011cpy.1_Missense_Mutation_p.E232K|EMB_uc010ivr.2_Missense_Mutation_p.E228K	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	282	Cytoplasmic (Potential).					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				GTGTACTTTTCACAAAGCAGA	0.348000													11	18					0	0	1	0	0
NDUFS4	4724	broad.mit.edu	37	5	52954388	52954388	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:52954388C>T	uc003jpe.2	+	4	386	c.358C>T	c.(358-360)CCC>TCC	p.P120S		NM_002495	NP_002486	O43181	NDUS4_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 4	120					brain development|cAMP-mediated signaling|mitochondrial electron transport, NADH to ubiquinone|mitochondrial respiratory chain complex I assembly|positive regulation of fibroblast proliferation|reactive oxygen species metabolic process|regulation of protein phosphorylation|response to cAMP|transport	mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			central_nervous_system(1)	1		Lung NSC(810;8.27e-05)|Breast(144;0.0848)			NADH(DB00157)	CAGGGCTGATCCCTTATCCAA	0.303000													40	37					0	0	1	0	0
IL31RA	133396	broad.mit.edu	37	5	55168105	55168105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:55168105G>A	uc003jql.2	+	4	345	c.280G>A	c.(280-282)GGA>AGA	p.G94R	IL31RA_uc003jqk.2_Missense_Mutation_p.G94R|IL31RA_uc011cqj.1_5'UTR|IL31RA_uc003jqm.2_Missense_Mutation_p.G62R|IL31RA_uc003jqn.2_Missense_Mutation_p.G94R|IL31RA_uc010iwa.1_Missense_Mutation_p.G62R|IL31RA_uc003jqo.2_5'UTR	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	62	Extracellular (Potential).|Fibronectin type-III 1.				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				AAGCGCTTTTGGAGAAAAACA	0.308000													11	19					0	0	1	0	0
MAST4	375449	broad.mit.edu	37	5	66462575	66462576	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:66462575_66462576CC>TT	uc003jut.1	+	28	7069_7070	c.7001_7002CC>TT	c.(7000-7002)TCC>TTT	p.S2334F	MAST4_uc003juw.2_Missense_Mutation_p.S2262F|MAST4_uc003jux.2_Missense_Mutation_p.S87F	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	2526						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		TCCCTGCCCTCCTTCCGGGTCT	0.668000													10	12					0	0	1	0	0
MRPS27	23107	broad.mit.edu	37	5	71528294	71528294	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:71528294G>A	uc003kbz.3	-	7	603	c.567C>T	c.(565-567)TGC>TGT	p.C189C	MRPS27_uc003kca.3_Silent_p.C133C|MRPS27_uc011cse.1_Silent_p.C203C|MRPS27_uc010iza.2_Silent_p.C133C|MRPS27_uc010iyz.1_RNA	NM_015084	NP_055899	Q92552	RT27_HUMAN	mitochondrial ribosomal protein S27	189						mitochondrion|ribosome					0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.46e-53)		TCTTTGCCAGGCAATGAAATA	0.418000													24	32					0	0	1	0	0
VCAN	1462	broad.mit.edu	37	5	82838072	82838072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:82838072G>A	uc003kii.3	+	8	9606	c.9250G>A	c.(9250-9252)GCA>ACA	p.A3084T	VCAN_uc003kij.3_Missense_Mutation_p.A2097T|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.A1748T	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	3084	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GGAAGGCACGGCAATCTATTT	0.373000													25	38					0	0	1	0	0
RASA1	5921	broad.mit.edu	37	5	86564656	86564657	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:86564656_86564657CC>TT	uc003kiw.2	+	1	506_507	c.388_389CC>TT	c.(388-390)CCA>TTA	p.P130L	RASA1_uc010jav.2_RNA|RASA1_uc003kix.2_5'Flank|RASA1_uc011ctv.1_5'Flank|RASA1_uc011ctw.1_5'Flank|RASA1_uc010jaw.2_5'Flank|RASA1_uc011ctu.1_Missense_Mutation_p.P130L	NM_002890	NP_002881	P20936	RASA1_HUMAN	RAS p21 protein activator 1 isoform 1	130					cytokinesis|embryo development|intracellular signal transduction|negative regulation of cell-matrix adhesion|negative regulation of neuron apoptosis|negative regulation of Ras protein signal transduction|positive regulation of anti-apoptosis|regulation of actin filament polymerization|regulation of cell shape|regulation of RNA metabolic process|vasculogenesis	cytosol|intrinsic to internal side of plasma membrane	glycoprotein binding|GTPase binding|potassium channel inhibitor activity|Ras GTPase activator activity|receptor binding			upper_aerodigestive_tract(3)|ovary(1)|lung(1)	5		all_cancers(142;8.25e-07)|Lung NSC(167;0.000185)|all_lung(232;0.000222)|Colorectal(57;0.00542)|Ovarian(174;0.0423)		OV - Ovarian serous cystadenocarcinoma(54;4.72e-41)|Epithelial(54;1.51e-36)|all cancers(79;3.76e-31)		GACTCTCGGGCCAGGCGGCGGT	0.515000													40	72					0	0	1	0	0
RASA1	5921	broad.mit.edu	37	5	86659237	86659237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:86659237G>A	uc003kiw.2	+	11	1644	c.1526G>A	c.(1525-1527)AGC>AAC	p.S509N	RASA1_uc010jav.2_RNA|RASA1_uc003kix.2_Missense_Mutation_p.S332N|RASA1_uc011ctv.1_Missense_Mutation_p.S342N|RASA1_uc011ctw.1_Missense_Mutation_p.S343N|RASA1_uc010jaw.2_Missense_Mutation_p.S331N	NM_002890	NP_002881	P20936	RASA1_HUMAN	RAS p21 protein activator 1 isoform 1	509	PH.				cytokinesis|embryo development|intracellular signal transduction|negative regulation of cell-matrix adhesion|negative regulation of neuron apoptosis|negative regulation of Ras protein signal transduction|positive regulation of anti-apoptosis|regulation of actin filament polymerization|regulation of cell shape|regulation of RNA metabolic process|vasculogenesis	cytosol|intrinsic to internal side of plasma membrane	glycoprotein binding|GTPase binding|potassium channel inhibitor activity|Ras GTPase activator activity|receptor binding			upper_aerodigestive_tract(3)|ovary(1)|lung(1)	5		all_cancers(142;8.25e-07)|Lung NSC(167;0.000185)|all_lung(232;0.000222)|Colorectal(57;0.00542)|Ovarian(174;0.0423)		OV - Ovarian serous cystadenocarcinoma(54;4.72e-41)|Epithelial(54;1.51e-36)|all cancers(79;3.76e-31)		TATTTTGAAAGCGAAAAACGA	0.333000													25	31					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90015878	90015878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:90015878C>T	uc003kju.2	+	44	9557	c.9461C>T	c.(9460-9462)TCT>TTT	p.S3154F	GPR98_uc003kjt.2_Missense_Mutation_p.S860F|GPR98_uc003kjv.2_Missense_Mutation_p.S754F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3154	Extracellular (Potential).|Calx-beta 22.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CTACAAATATCTGCCATATTA	0.368000													57	102					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90052274	90052274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:90052274G>A	uc003kju.2	+	56	11680	c.11584G>A	c.(11584-11586)GAC>AAC	p.D3862N	GPR98_uc003kjt.2_Missense_Mutation_p.D1568N|GPR98_uc003kjv.2_Missense_Mutation_p.D1462N	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3862	Extracellular (Potential).|Calx-beta 25.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CCCCCAGGATGACCTTCCTGA	0.413000													92	109					0	0	1	0	0
ELL2	22936	broad.mit.edu	37	5	95234484	95234484	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:95234484G>A	uc003klr.3	-	8	1335	c.985C>T	c.(985-987)CCT>TCT	p.P329S		NM_012081	NP_036213	O00472	ELL2_HUMAN	elongation factor, RNA polymerase II, 2	329					regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter	transcription elongation factor complex				central_nervous_system(1)	1		all_cancers(142;2.04e-06)|all_epithelial(76;3.1e-09)|all_lung(232;0.00309)|Lung NSC(167;0.00454)|Ovarian(225;0.0165)|Colorectal(57;0.0343)|Breast(839;0.198)		all cancers(79;2.16e-15)		TTCATTAAAGGATCAATAAAC	0.393000													98	113					0	0	1	0	0
PCSK1	5122	broad.mit.edu	37	5	95733109	95733109	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:95733109C>T	uc003kls.1	-	12	1859	c.1653G>A	c.(1651-1653)TGG>TGA	p.W551*	PCSK1_uc010jbi.1_Nonsense_Mutation_p.W241*	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	551					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ACATGAAGTCCCAATTCTTAA	0.393000													32	34					0	0	1	0	0
RIOK2	55781	broad.mit.edu	37	5	96506961	96506961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:96506961G>A	uc003kmz.2	-	6	838	c.728C>T	c.(727-729)ACC>ATC	p.T243I	RIOK2_uc003kna.3_Missense_Mutation_p.T243I	NM_018343	NP_060813	Q9BVS4	RIOK2_HUMAN	RIO kinase 2 isoform 1	243							ATP binding|protein serine/threonine kinase activity			kidney(1)	1		all_cancers(142;0.000125)|all_epithelial(76;8.48e-07)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0676)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0657)		ATCAATCATGGTGATATGGTC	0.303000													26	46					0	0	1	0	0
APC	324	broad.mit.edu	37	5	112155002	112155002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:112155002G>A	uc010jby.2	+	10	1653	c.1273G>A	c.(1273-1275)GAA>AAA	p.E425K	APC_uc011cvt.1_Missense_Mutation_p.E407K|APC_uc003kpz.3_Missense_Mutation_p.E425K|APC_uc003kpy.3_Missense_Mutation_p.E425K|APC_uc010jbz.2_Missense_Mutation_p.E142K|APC_uc010jca.2_5'Flank	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	425	Leu-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity			large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		GGAGTGGCAGGAAGCTCATGA	0.443000		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			30	57					0	0	1	0	0
FAM170A	340069	broad.mit.edu	37	5	118970084	118970084	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:118970084G>A	uc003ksm.2	+	3	851	c.641G>A	c.(640-642)AGA>AAA	p.R214K	FAM170A_uc003ksl.2_Intron|FAM170A_uc003ksn.2_Missense_Mutation_p.R214K|FAM170A_uc003kso.2_Missense_Mutation_p.R167K	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	214						intracellular	zinc ion binding			skin(1)	1						GACACACCCAGAGCCAAGACT	0.597000													82	13					0	0	1	0	0
SLC27A6	28965	broad.mit.edu	37	5	128368934	128368934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:128368934G>A	uc003kuy.2	+	11	2215	c.1819G>A	c.(1819-1821)GAA>AAA	p.E607K	SLC27A6_uc003kuz.2_Missense_Mutation_p.E607K	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	607					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		ACTGACCAGGGAACTTTATGA	0.338000													13	3					0	0	1	0	0
TCF7	6932	broad.mit.edu	37	5	133451023	133451023	+	Silent	SNP	G	A	A	rs140392908	byFrequency	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:133451023G>A	uc003kyt.2	+	2	457	c.261G>A	c.(259-261)CGG>CGA	p.R87R	TCF7_uc003kyu.1_5'Flank|TCF7_uc003kyv.2_5'Flank|TCF7_uc003kyw.2_5'Flank|TCF7_uc003kyx.2_5'Flank|TCF7_uc003kyy.2_5'Flank|TCF7_uc003kyz.2_5'Flank|TCF7_uc003kza.2_5'Flank	NM_003202	NP_003193	P36402	TCF7_HUMAN	transcription factor 7 (T-cell specific,	87					cellular response to interleukin-4|immune response|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription regulatory region DNA binding				0		Breast(839;0.058)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CTCTCGGGCGGGAACACGCTG	0.721000													6	9					0	0	1	0	0
EGR1	1958	broad.mit.edu	37	5	137803747	137803747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:137803747C>T	uc003ldb.1	+	2	1879	c.1609C>T	c.(1609-1611)CCC>TCC	p.P537S	EGR1_uc011cyu.1_3'UTR	NM_001964	NP_001955	P18146	EGR1_HUMAN	early growth response 1	537					cellular response to heparin|cellular response to mycophenolic acid|glomerular mesangial cell proliferation|interleukin-1-mediated signaling pathway|positive regulation of glomerular metanephric mesangial cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of protein sumoylation|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytoplasm|nucleus	histone acetyltransferase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			AACCTTTTCTCCCAGGACAAT	0.512000													80	14					0	0	1	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139889280	139889280	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:139889280T>C	uc003lfs.1	+	21	3948	c.3824T>C	c.(3823-3825)GTT>GCT	p.V1275A	ANKHD1_uc003lfq.1_Missense_Mutation_p.V1294A|ANKHD1_uc003lfr.2_Missense_Mutation_p.V1275A|ANKHD1_uc003lft.1_Missense_Mutation_p.V486A|ANKHD1_uc003lfu.1_Missense_Mutation_p.V755A|ANKHD1_uc003lfv.1_Missense_Mutation_p.V352A|ANKHD1-EIF4EBP3_uc011czh.1_Missense_Mutation_p.V14A|ANKHD1_uc003lfw.2_5'Flank	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1275						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTTGGAAGAGTTCTTCTTGAT	0.413000													46	6					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202658	140202658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:140202658C>T	uc003lhl.2	+	1	1298	c.1298C>T	c.(1297-1299)TCG>TTG	p.S433L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.S433L|PCDHA5_uc003lhj.1_Missense_Mutation_p.S433L	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	433	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCTCGCCTTCGCTGTGGGCC	0.637000													195	36					0	0	1	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140308740	140308740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:140308740C>T	uc003lih.2	+	1	2439	c.2263C>T	c.(2263-2265)CTC>TTC	p.L755F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.L755F	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	755	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCAGACTTATCTCTATCGGGC	0.473000													74	13					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553770	140553770	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:140553770A>G	uc003lit.2	+	1	1528	c.1354A>G	c.(1354-1356)ACC>GCC	p.T452A		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	452	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCCGCCTTCACCCAAACCTC	0.602000													80	117					0	0	1	0	0
SLC25A2	83884	broad.mit.edu	37	5	140682600	140682600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:140682600G>A	uc003ljf.2	-	1	1013	c.833C>T	c.(832-834)CCT>CTT	p.P278L		NM_031947	NP_114153	Q9BXI2	ORNT2_HUMAN	solute carrier family 25 member 2	278	Solcar 3.				mitochondrial ornithine transport|urea cycle	integral to membrane|mitochondrial inner membrane	L-ornithine transmembrane transporter activity			ovary(1)	1		all_lung(500;0.000249)|Lung NSC(810;0.0011)|Ovarian(839;0.00556)|Breast(839;0.0173)|all_hematologic(541;0.152)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.00204)	L-Ornithine(DB00129)	CCCATTGGCAGGGATTGCTCG	0.438000													39	6					0	0	1	0	0
SLC25A2	83884	broad.mit.edu	37	5	140682602	140682602	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:140682602G>C	uc003ljf.2	-	1	1011	c.831C>G	c.(829-831)ATC>ATG	p.I277M		NM_031947	NP_114153	Q9BXI2	ORNT2_HUMAN	solute carrier family 25 member 2	277	Solcar 3.				mitochondrial ornithine transport|urea cycle	integral to membrane|mitochondrial inner membrane	L-ornithine transmembrane transporter activity			ovary(1)	1		all_lung(500;0.000249)|Lung NSC(810;0.0011)|Ovarian(839;0.00556)|Breast(839;0.0173)|all_hematologic(541;0.152)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.00204)	L-Ornithine(DB00129)	CATTGGCAGGGATTGCTCGAA	0.443000													38	6					0	0	1	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140746235	140746235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:140746235C>T	uc003lju.1	+	1	2338	c.2338C>T	c.(2338-2340)CTT>TTT	p.L780F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Missense_Mutation_p.L780F	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	780	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGACACGCTCCTTAGTGAAGA	0.517000													189	35					0	0	1	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140752194	140752194	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:140752194G>A	uc003ljw.1	+	1	2233	c.2233G>A	c.(2233-2235)GAA>AAA	p.E745K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Missense_Mutation_p.E745K|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	745	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACCTACAGCGAAAGGACTTT	0.512000													51	4					0	0	1	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140754809	140754809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:140754809C>T	uc003ljy.1	+	1	1159	c.1159C>T	c.(1159-1161)CCG>TCG	p.P387S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Missense_Mutation_p.P387S	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	387	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGTTCCATCCCGAGAAGTCT	0.443000													69	8					0	0	1	0	0
PCDHGA12	26025	broad.mit.edu	37	5	140811682	140811682	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:140811682C>T	uc003lkt.1	+	1	1525	c.1356C>T	c.(1354-1356)TTC>TTT	p.F452F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Silent_p.F452F	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	452	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCCGGTCTTCCCTCAGGCCT	0.592000													63	7					0	0	1	0	0
SH3RF2	153769	broad.mit.edu	37	5	145435663	145435663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:145435663C>T	uc003lnt.2	+	8	1680	c.1442C>T	c.(1441-1443)CCC>CTC	p.P481L	SH3RF2_uc011dbl.1_Missense_Mutation_p.P481L|SH3RF2_uc011dbm.1_5'UTR|SH3RF2_uc003lnu.2_5'UTR|SH3RF2_uc011dbn.1_5'UTR	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	481							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CAAAGCCGTCCCTTCAAATCC	0.582000													113	15					0	0	1	0	0
GABRB2	2561	broad.mit.edu	37	5	160721205	160721205	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:160721205C>T	uc003lys.1	-	11	1640	c.1422G>A	c.(1420-1422)CTG>CTA	p.L474L	GABRB2_uc011deh.1_Silent_p.L275L|GABRB2_uc003lyr.1_Silent_p.L436L|GABRB2_uc003lyt.1_Silent_p.L436L|GABRB2_uc010jiu.1_Silent_p.L373L	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	474	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TGGTGATTTTCAGTTGGGAGG	0.502000													38	7					0	0	1	0	0
GABRG2	2566	broad.mit.edu	37	5	161524701	161524701	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:161524701A>C	uc003lyz.3	+	4	743	c.385A>C	c.(385-387)AAC>CAC	p.N129H	GABRG2_uc010jjc.2_Missense_Mutation_p.N129H|GABRG2_uc003lyy.3_Missense_Mutation_p.N129H|GABRG2_uc011dej.1_Missense_Mutation_p.N34H	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	129	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		TTTGAAATTTAACAGCACCAT	0.353000													48	44					0	0	1	0	0
CDHR2	54825	broad.mit.edu	37	5	176008476	176008476	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:176008476G>A	uc003mem.1	+	17	2017	c.1951G>A	c.(1951-1953)GAG>AAG	p.E651K	CDHR2_uc003men.1_Missense_Mutation_p.E651K	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	651	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						CCTGGACAGAGAGGCCATCGA	0.622000													43	36					0	0	1	0	0
NSD1	64324	broad.mit.edu	37	5	176721950	176721950	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:176721950G>A	uc003mfr.3	+	23	7719	c.7581G>A	c.(7579-7581)TGG>TGA	p.W2527*	NSD1_uc003mft.3_Nonsense_Mutation_p.W2258*|NSD1_uc011dfx.1_Nonsense_Mutation_p.W2175*	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	2527					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		AGGACCCCTGGCAAGCTGTTA	0.532000			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			44	175					0	0	1	0	0
SERPINB1	1992	broad.mit.edu	37	6	2833937	2833937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:2833937C>T	uc003mub.2	-	7	1089	c.1045G>A	c.(1045-1047)GAA>AAA	p.E349K	SERPINB1_uc003muc.2_Missense_Mutation_p.E198K	NM_030666	NP_109591	P30740	ILEU_HUMAN	serine (or cysteine) proteinase inhibitor, clade	349					regulation of proteolysis	cytoplasm|extracellular space	serine-type endopeptidase inhibitor activity			breast(4)|ovary(1)	5	Ovarian(93;0.0412)			OV - Ovarian serous cystadenocarcinoma(45;0.0717)		AAATTTTCTTCGGGCATCAAC	0.448000													23	28					0	0	1	0	0
GPLD1	2822	broad.mit.edu	37	6	24475372	24475372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:24475372C>T	uc003ned.1	-	5	529	c.418G>A	c.(418-420)GGA>AGA	p.G140R	GPLD1_uc010jpr.1_Silent_p.K11K|GPLD1_uc010jps.1_Missense_Mutation_p.G140R|GPLD1_uc003nee.2_Missense_Mutation_p.G140R	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	140						extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						CTAAGGAATCCTTGTTCAAGG	0.463000													75	109					0	0	1	0	0
HIST1H2AA	221613	broad.mit.edu	37	6	25726547	25726547	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:25726547G>C	uc003nfc.2	-	1	244	c.209C>G	c.(208-210)GCG>GGG	p.A70G	HIST1H2BA_uc003nfd.2_5'Flank	NM_170745	NP_734466	Q96QV6	H2A1A_HUMAN	histone cluster 1, H2aa	70					nucleosome assembly	nucleosome|nucleus	DNA binding				0						ATCGCGAGACGCATTGCCTGC	0.517000													49	67					0	0	1	0	0
SLC17A1	6568	broad.mit.edu	37	6	25811773	25811773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:25811773C>T	uc003nfh.3	-	10	1147	c.1031G>A	c.(1030-1032)GGA>GAA	p.G344E	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Missense_Mutation_p.G342E|SLC17A1_uc010jqc.1_Missense_Mutation_p.G288E	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	344	Helical; (Potential).				sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						AAGGAGAAATCCTGGGGAGTG	0.473000													35	45					0	0	1	0	0
BTN2A3	54718	broad.mit.edu	37	6	26428952	26428952	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:26428952T>A	uc011dkl.1	+	5	864	c.834T>A	c.(832-834)CAT>CAA	p.H278Q	BTN2A3_uc011dkm.1_RNA					RecName: Full=Butyrophilin subfamily 2 member A3; Flags: Precursor;												0						TTTAGCAGCATCTCATGACAT	0.428000													60	294					0	0	1	0	0
HIST1H1B	3009	broad.mit.edu	37	6	27835110	27835110	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:27835110C>T	uc003njx.2	-	1	250	c.198G>A	c.(196-198)AAG>AAA	p.K66K		NM_005322	NP_005313	P16401	H15_HUMAN	histone cluster 1, H1b	66	H15.				nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(2)|lung(1)	3						CTAAGGCCTTCTTAAGGGCTG	0.587000													93	146					0	0	1	0	0
OR2B6	26212	broad.mit.edu	37	6	27925335	27925336	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:27925335_27925336CC>TT	uc011dkx.1	+	1	317_318	c.317_318CC>TT	c.(316-318)GCC>GTT	p.A106V		NM_012367	NP_036499	P58173	OR2B6_HUMAN	olfactory receptor, family 2, subfamily B,	106	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ATATTTCTGGCCTTGGGGGCTA	0.446000													24	41					0	0	1	0	0
RNF39	80352	broad.mit.edu	37	6	30043512	30043513	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:30043512_30043513GG>AA	uc003npe.2	-	1	116_117	c.54_55CC>TT	c.(52-57)ATCCCA>ATTTCA	p.P19S	RNF39_uc003npd.2_Missense_Mutation_p.P19S	NM_025236	NP_079512	Q9H2S5	RNF39_HUMAN	ring finger protein 39 isoform 1	19						cytoplasm	zinc ion binding				0						CCCTCTCCTGGGATTGCCTCTC	0.584000													34	100					0	0	1	0	0
DHX16	8449	broad.mit.edu	37	6	30632944	30632944	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:30632944G>A	uc003nqz.2	-	6	1241	c.1029C>T	c.(1027-1029)GCC>GCT	p.A343A	DHX16_uc011dmo.1_Silent_p.A283A	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	343					mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						CAGCATCTCGGGCCCCAAACT	0.627000													18	28					0	0	1	0	0
MDC1	9656	broad.mit.edu	37	6	30672022	30672023	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:30672022_30672023AG>TA	uc003nrg.3	-	10	5377_5378	c.4937_4938CT>TA	c.(4936-4938)TCT>TTA	p.S1646L	MDC1_uc003nrf.3_Intron|MDC1_uc011dmp.1_Missense_Mutation_p.S1253L	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1646					cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						GAGTCTTGACAGAGGACCTATT	0.579000								Other_conserved_DNA_damage_response_genes					102	142					0	0	1	0	0
MDC1	9656	broad.mit.edu	37	6	30676073	30676073	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:30676073C>T	uc003nrg.3	-	8	2723	c.2283G>A	c.(2281-2283)GAG>GAA	p.E761E	MDC1_uc003nrf.3_Intron|MDC1_uc011dmp.1_Intron	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	761				Missing (in Ref. 2; CAH18685).	cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						TCTCAGAGTCCTCAGACTCTC	0.458000								Other_conserved_DNA_damage_response_genes					33	50					0	0	1	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779300	31779300	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:31779300G>A	uc003nxh.2	-	2	633	c.450C>T	c.(448-450)GCC>GCT	p.A150A	HSPA1L_uc010jte.2_Silent_p.A150A	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	150					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CATTGAAATAGGCTGGCACGG	0.488000													28	51					0	0	1	0	0
C2	717	broad.mit.edu	37	6	31896607	31896607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:31896607G>A	uc003nyf.2	+	3	619	c.355G>A	c.(355-357)GAT>AAT	p.D119N	C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_Intron|C2_uc003nye.3_Missense_Mutation_p.D119N|C2_uc010jtk.2_Intron|C2_uc011doq.1_Missense_Mutation_p.D90N|C2_uc003nyg.2_Intron|CFB_uc011dor.1_Intron	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	119	Sushi 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		CGAGTGTGAGGATGGCTTCAT	0.577000													100	125					0	0	1	0	0
CFB	629	broad.mit.edu	37	6	31918680	31918680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:31918680G>A	uc003nyj.3	+	14	2092	c.1814G>A	c.(1813-1815)CGA>CAA	p.R605Q	CFB_uc011dor.1_Missense_Mutation_p.R1107Q	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	605	Peptidase S1.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						GGAACAACTCGAGCTTTGAGG	0.527000													52	82					0	0	1	0	0
STK19	8859	broad.mit.edu	37	6	31940123	31940123	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:31940123G>A	uc003nyv.2	+	2	393	c.265G>A	c.(265-267)GAC>AAC	p.D89N	DOM3Z_uc003nyo.1_5'Flank|DOM3Z_uc003nyp.1_5'Flank|DOM3Z_uc003nyq.1_5'Flank|DOM3Z_uc003nyr.1_5'Flank|DOM3Z_uc003nys.1_5'Flank|DOM3Z_uc010jtl.1_5'Flank|STK19_uc003nyt.2_Missense_Mutation_p.D46N|DOM3Z_uc003nyu.1_5'Flank|STK19_uc011dow.1_Missense_Mutation_p.D89N|STK19_uc011dox.1_Missense_Mutation_p.D46N|STK19_uc003nyw.2_Missense_Mutation_p.D89N|STK19_uc010jtn.1_RNA	NM_032454	NP_115830	P49842	STK19_HUMAN	serine/threonine kinase 19 isoform 2	89			D -> N (in a metastatic melanoma sample; somatic mutation).			nucleus	ATP binding|protein binding|protein serine/threonine kinase activity	p.D89N(2)		skin(4)	4						TGCGCCGGAAGACCCTATTTT	0.582000													51	177					0	0	1	0	0
C4A	720	broad.mit.edu	37	6	31962366	31962366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:31962366G>A	uc011doy.1	+	21	2735	c.2684G>A	c.(2683-2685)CGG>CAG	p.R895Q	C4A_uc011doz.1_Missense_Mutation_p.R895Q	NM_007293	NP_009224	P0C0L4	CO4A_HUMAN	complement component 4A preproprotein	895					complement activation, classical pathway|inflammatory response|innate immune response	extracellular space	endopeptidase inhibitor activity				0						GGCTCTGCCCGGCCTGTTGCC	0.692000													27	28					0	0	1	0	0
C4A	720	broad.mit.edu	37	6	31996995	31996995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:31996995G>A	uc011dpd.1	+	28	3607	c.3556G>A	c.(3556-3558)GGG>AGG	p.G1186R	C4A_uc011dpe.1_Missense_Mutation_p.G1186R	NM_007293	NP_009224	P0C0L4	CO4A_HUMAN	complement component 4A preproprotein	1186					complement activation, classical pathway|inflammatory response|innate immune response	extracellular space	endopeptidase inhibitor activity				0						AGCAAGTGCTGGGCTCCTGGG	0.617000													59	176					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32014231	32014232	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:32014231_32014232GA>TT	uc003nzl.2	-	31	10522_10523	c.10320_10321TC>AA	c.(10318-10323)GCTCCC>GCAACC	p.P3441T	TNXB_uc003nzg.1_5'Flank|TNXB_uc003nzh.1_5'UTR	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3488					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TTCTCCAGGGGAGCTGTGCAGA	0.634000													21	22					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32036443	32036443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:32036443G>A	uc003nzl.2	-	17	6146	c.5944C>T	c.(5944-5946)CCC>TCC	p.P1982S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2064					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGGGGCTCGGGGGTTGCGGTG	0.632000													73	113					0	0	1	0	0
HLA-DQA1	3117	broad.mit.edu	37	6	32609155	32609155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:32609155G>A	uc003obr.2	+	2	204	c.151G>A	c.(151-153)GAA>AAA	p.E51K	HLA-DQA1_uc003obs.2_RNA|HLA-DQA1_uc003obt.1_Missense_Mutation_p.E51K|HLA-DQA1_uc003obu.2_5'Flank	NM_002122	NP_002113	P01909	DQA1_HUMAN	major histocompatibility complex, class II, DQ	51	Alpha-1.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						GTACACCCATGAATTTGATGG	0.532000													71	56					0	0	1	0	0
BRPF3	27154	broad.mit.edu	37	6	36179185	36179185	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:36179185C>T	uc003olv.3	+	7	2554	c.2330C>T	c.(2329-2331)GCC>GTC	p.A777V	BRPF3_uc010jwb.2_Intron|BRPF3_uc011dtj.1_Intron|BRPF3_uc010jwc.2_RNA|BRPF3_uc011dtk.1_Intron	NM_015695	NP_056510	Q9ULD4	BRPF3_HUMAN	bromodomain and PHD finger containing, 3	777					histone H3 acetylation|platelet activation|platelet degranulation	cytosol|extracellular region|MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						GAGATCAATGCCCTTCGGCAG	0.642000													16	19					0	0	1	0	0
PNPLA1	285848	broad.mit.edu	37	6	36259114	36259114	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:36259114C>G	uc010jwf.2	+	2	223	c.223C>G	c.(223-225)CTC>GTC	p.L75V	PNPLA1_uc003olw.1_5'UTR|PNPLA1_uc010jwe.1_5'UTR	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	75	Patatin.				lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						TCTCAGAGTCCTCAACGTGGG	0.582000													34	30					0	0	1	0	0
GLP1R	2740	broad.mit.edu	37	6	39046751	39046751	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:39046751C>T	uc003ooj.3	+	9	963	c.903C>T	c.(901-903)TCC>TCT	p.S301S	GLP1R_uc003ooh.2_RNA|GLP1R_uc003ooi.2_RNA	NM_002062	NP_002053	P43220	GLP1R_HUMAN	glucagon-like peptide 1 receptor precursor	301	Extracellular (Potential).				activation of adenylate cyclase activity|cAMP-mediated signaling|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	glucagon receptor activity|peptide receptor activity, G-protein coupled			lung(3)|breast(1)|pancreas(1)	5					Exenatide(DB01276)|Glucagon recombinant(DB00040)	CCAGGAACTCCAACATGAACT	0.587000													221	256					0	0	1	0	0
PTK7	5754	broad.mit.edu	37	6	43126660	43126660	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:43126660C>T	uc003oub.1	+	18	3025	c.2827C>T	c.(2827-2829)CAA>TAA	p.Q943*	PTK7_uc003ouc.1_Nonsense_Mutation_p.Q887*|PTK7_uc003oud.1_Nonsense_Mutation_p.Q903*|PTK7_uc003oue.1_Nonsense_Mutation_p.Q813*|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_RNA|PTK7_uc011dve.1_Nonsense_Mutation_p.Q951*|PTK7_uc010jyj.1_Nonsense_Mutation_p.Q269*|PTK7_uc003ouh.1_5'Flank	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	943	Cytoplasmic (Potential).|Protein kinase; inactive.|Interaction with CTNNB1.				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			TGCCCAGAGACAAGTGAAGGT	0.592000													51	57					0	0	1	0	0
TTBK1	84630	broad.mit.edu	37	6	43230705	43230705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:43230705G>A	uc003ouq.1	+	13	1882	c.1603G>A	c.(1603-1605)GAG>AAG	p.E535K	TTBK1_uc011dvg.1_Missense_Mutation_p.E58K	NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	535						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			GCTGGCTGAGGAGGAGGATTT	0.642000													20	36					0	0	1	0	0
TMEM63B	55362	broad.mit.edu	37	6	44102451	44102451	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:44102451G>C	uc003owr.2	+	2	194	c.130G>C	c.(130-132)GTG>CTG	p.V44L	TMEM63B_uc003owq.1_Missense_Mutation_p.V44L|TMEM63B_uc010jyy.1_5'UTR|TMEM63B_uc003ows.2_5'Flank	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	44	Helical; (Potential).					integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			CGTCCCCACCGTGCTGGCTCT	0.607000													8	191					0	0	1	0	0
SPATS1	221409	broad.mit.edu	37	6	44336148	44336148	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:44336148A>G	uc003oxk.2	+	5	954	c.607A>G	c.(607-609)ACT>GCT	p.T203A	SPATS1_uc003oxg.2_RNA|SPATS1_uc010jzb.2_Missense_Mutation_p.T88A	NM_145026	NP_659463	Q496A3	SPAS1_HUMAN	spermatogenesis associated, serine-rich 1	203										skin(1)	1	all_lung(25;0.00469)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			CCCAAAGTTAACTCCAGGCGA	0.403000													55	83					0	0	1	0	0
PGK2	5232	broad.mit.edu	37	6	49754297	49754297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:49754297C>T	uc003ozu.2	-	1	711	c.604G>A	c.(604-606)GAA>AAA	p.E202K		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	202					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					ACTGGGTTTTCCAAGGCTTTA	0.448000													27	88					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51889911	51889911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:51889911G>A	uc003pah.1	-	32	4973	c.4697C>T	c.(4696-4698)TCC>TTC	p.S1566F	PKHD1_uc003pai.2_Missense_Mutation_p.S1566F	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1566	Extracellular (Potential).|IPT/TIG 10.				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GAAGTGTCTGGAAACATTACC	0.458000													41	46					0	0	1	0	0
IL17A	3605	broad.mit.edu	37	6	52052520	52052520	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:52052520G>A	uc003pak.1	+	2	192	c.147G>A	c.(145-147)CTG>CTA	p.L49L		NM_002190	NP_002181	Q16552	IL17_HUMAN	interleukin 17A precursor	49					apoptosis|cell-cell signaling|fibroblast activation|immune response|inflammatory response|positive regulation of interleukin-23 production|positive regulation of osteoclast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein glycosylation	extracellular space	cytokine activity				0	Lung NSC(77;0.116)					TGGTCAACCTGAACATCCATA	0.493000													60	84					0	0	1	0	0
C6orf142	90523	broad.mit.edu	37	6	53986293	53986293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:53986293C>T	uc003pcg.3	+	2	225	c.112C>T	c.(112-114)CCC>TCC	p.P38S	C6orf142_uc003pcf.2_Missense_Mutation_p.P38S|C6orf142_uc003pch.3_Intron|C6orf142_uc011dwz.1_Intron|C6orf142_uc011dxa.1_Missense_Mutation_p.P49S	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	38	Interaction with LMNA.					nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					CACATTTGTCCCCACTGTCAG	0.413000													47	120					0	0	1	0	0
DST	667	broad.mit.edu	37	6	56462805	56462805	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:56462805C>T	uc003pdf.2	-	41	5600	c.5572_splice	c.e41-1	p.V1858_splice	DST_uc003pcz.3_Splice_Site_p.V1680_splice|DST_uc011dxj.1_Splice_Site_p.V1709_splice|DST_uc011dxk.1_Splice_Site_p.V1720_splice|DST_uc003pcy.3_Splice_Site_p.V1354_splice|DST_uc010kaa.1_Splice_Site	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2						cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			CTGCTGCTACCTGGGAAGGGA	0.403000													14	10					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	70064192	70064192	+	Missense_Mutation	SNP	C	T	T	rs142863825		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:70064192C>T	uc003pev.3	+	27	3975	c.3527C>T	c.(3526-3528)TCG>TTG	p.S1176L	BAI3_uc010kak.2_Missense_Mutation_p.S1176L|BAI3_uc011dxx.1_Missense_Mutation_p.S382L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1176	Poly-Ser.|Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TCTTCGAGTTCGTTTCCTAAT	0.393000													35	63					0	0	1	0	0
COL12A1	1303	broad.mit.edu	37	6	75812356	75812356	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:75812356G>A	uc003phs.2	-	56	8538	c.8372C>T	c.(8371-8373)CCA>CTA	p.P2791L	COL12A1_uc003pht.2_Missense_Mutation_p.P1627L	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2791	Triple-helical region (COL2) with 1 imperfection.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						CTGAGGGCCTGGAGGACCCTG	0.478000													30	23					0	0	1	0	0
FILIP1	27145	broad.mit.edu	37	6	76023594	76023594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:76023594C>T	uc003pia.2	-	5	2327	c.1954G>A	c.(1954-1956)GAT>AAT	p.D652N	FILIP1_uc003phy.1_Missense_Mutation_p.D652N|FILIP1_uc003phz.2_Missense_Mutation_p.D553N|FILIP1_uc010kbe.2_Missense_Mutation_p.D655N|FILIP1_uc003pib.1_Missense_Mutation_p.D404N	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	652	Potential.									skin(3)|ovary(1)	4						TTCATCAAATCCCCTTCGACC	0.418000													72	190					0	0	1	0	0
IMPG1	3617	broad.mit.edu	37	6	76657064	76657064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:76657064C>T	uc003pik.1	-	14	2141	c.2011G>A	c.(2011-2013)GAA>AAA	p.E671K		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	671	SEA 2.				visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				CTGTCTATTTCCAGATGGAGT	0.418000													44	30					0	0	1	0	0
TTK	7272	broad.mit.edu	37	6	80750364	80750364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:80750364G>A	uc003pjc.2	+	21	2508	c.2434G>A	c.(2434-2436)GTT>ATT	p.V812I	TTK_uc003pjb.3_Missense_Mutation_p.V811I	NM_003318	NP_003309	P33981	TTK_HUMAN	TTK protein kinase	812					mitotic cell cycle spindle assembly checkpoint|mitotic spindle organization|positive regulation of cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation	spindle	ATP binding|identical protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(4)|stomach(2)|lung(2)|large_intestine(2)|pancreas(1)	11		all_cancers(76;0.00177)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)|all_epithelial(107;0.2)		BRCA - Breast invasive adenocarcinoma(397;0.0321)		AATGAAATATGTTCTGGGCCA	0.299000													21	35					0	0	1	0	0
IBTK	25998	broad.mit.edu	37	6	82891739	82891739	+	Silent	SNP	A	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:82891739A>T	uc003pjl.1	-	26	4109	c.3582T>A	c.(3580-3582)TCT>TCA	p.S1194S	IBTK_uc011dyu.1_Silent_p.S145S|IBTK_uc011dyv.1_Silent_p.S1179S|IBTK_uc011dyw.1_Silent_p.S993S|IBTK_uc010kbi.1_Silent_p.S888S	NM_015525	NP_056340	Q9P2D0	IBTK_HUMAN	inhibitor of Bruton's tyrosine kinase	1194					negative regulation of protein phosphorylation|release of sequestered calcium ion into cytosol	cytoplasm|membrane|nucleus	protein kinase binding|protein tyrosine kinase inhibitor activity			ovary(2)|central_nervous_system(2)	4		all_cancers(76;3.38e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.0037)		BRCA - Breast invasive adenocarcinoma(397;0.0901)		AATGCAGAGAAGATGCCCTGC	0.353000													25	20					0	0	1	0	0
SNAP91	9892	broad.mit.edu	37	6	84270636	84270636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:84270636G>A	uc011dze.1	-	26	2790	c.2473C>T	c.(2473-2475)CCT>TCT	p.P825S	SNAP91_uc011dzd.1_Missense_Mutation_p.P323S|SNAP91_uc003pkb.2_Missense_Mutation_p.P734S|SNAP91_uc003pkc.2_Missense_Mutation_p.P795S|SNAP91_uc003pkd.2_Missense_Mutation_p.P518S|SNAP91_uc003pka.2_Missense_Mutation_p.P823S	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	825	Pro-rich.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		GCAACAGGAGGAACTGAACTG	0.328000													19	21					0	0	1	0	0
CYB5R4	51167	broad.mit.edu	37	6	84630843	84630843	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:84630843T>C	uc003pkf.2	+	8	739	c.607T>C	c.(607-609)TCC>CCC	p.S203P		NM_016230	NP_057314	Q7L1T6	NB5R4_HUMAN	cytochrome b5 reductase 4	203	CS.				cell development|detection of oxygen|generation of precursor metabolites and energy|glucose homeostasis|insulin secretion|response to antibiotic|superoxide metabolic process	endoplasmic reticulum|perinuclear region of cytoplasm	cytochrome-b5 reductase activity|heme binding|NAD(P)H oxidase activity			breast(2)	2		all_cancers(76;7e-07)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00128)		BRCA - Breast invasive adenocarcinoma(397;0.0871)		TCAGAATGATTCCTTTAGAGC	0.264000													9	16					0	0	1	0	0
HTR1E	3354	broad.mit.edu	37	6	87725524	87725524	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:87725524C>T	uc003pli.2	+	2	1175	c.472C>T	c.(472-474)CTG>TTG	p.L158L		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	158	Helical; Name=4; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	CATGCCCCCTCTGTTCTGGAG	0.562000													40	92					0	0	1	0	0
MDN1	23195	broad.mit.edu	37	6	90381983	90381983	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:90381983G>A	uc003pnn.1	-	82	13846	c.13730C>T	c.(13729-13731)GCC>GTC	p.A4577V		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	4577					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CTCGGAGATGGCAGAAATTAT	0.468000													65	41					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	94120355	94120355	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:94120355C>T	uc003poe.2	-	3	937	c.696G>A	c.(694-696)GGG>GGA	p.G232G	EPHA7_uc003pof.2_Silent_p.G232G|EPHA7_uc011eac.1_Silent_p.G232G|EPHA7_uc003pog.3_Silent_p.G232G	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	232	Extracellular (Potential).|Cys-rich.		G -> R (in a metastatic melanoma sample; somatic mutation).			integral to plasma membrane	ATP binding|ephrin receptor activity	p.G232R(1)		lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		TGACACATGTCCCTCGAACCT	0.463000													18	39					0	0	1	0	0
FUT9	10690	broad.mit.edu	37	6	96651051	96651051	+	Missense_Mutation	SNP	G	A	A	rs146406553		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:96651051G>A	uc003pop.3	+	3	361	c.20G>A	c.(19-21)GGA>GAA	p.G7E		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	7	Cytoplasmic (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity	p.G7E(1)		skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		ACATCCAAAGGAATTCTTCGC	0.388000													56	55					0	0	1	0	0
FHL5	9457	broad.mit.edu	37	6	97053792	97053792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:97053792G>A	uc003pos.1	+	5	754	c.349G>A	c.(349-351)GAA>AAA	p.E117K	FHL5_uc003pot.1_Missense_Mutation_p.E117K	NM_020482	NP_065228	Q5TD97	FHL5_HUMAN	activator of cAMP-responsive element modulator	117	LIM zinc-binding 2.					nucleus	zinc ion binding			ovary(2)	2		all_cancers(76;1.57e-07)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00266)|Colorectal(196;0.0341)|Lung NSC(302;0.204)		BRCA - Breast invasive adenocarcinoma(108;0.0948)		CCGCAAAATGGAATTTAAGGG	0.363000													34	17					0	0	1	0	0
USP45	85015	broad.mit.edu	37	6	99958081	99958081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:99958081G>A	uc003ppx.2	-	2	549	c.16C>T	c.(16-18)CCA>TCA	p.P6S	USP45_uc003ppw.2_5'Flank|USP45_uc003ppy.2_RNA|USP45_uc010kcq.1_Missense_Mutation_p.P6S|USP45_uc003ppz.2_Missense_Mutation_p.P6S|USP45_uc003pqa.2_Missense_Mutation_p.P6S	NM_001080481	NP_001073950	Q70EL2	UBP45_HUMAN	ubiquitin specific peptidase 45	6					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|breast(1)	2		all_cancers(76;0.000208)|Acute lymphoblastic leukemia(125;8.41e-11)|all_hematologic(75;2.56e-07)|all_epithelial(107;0.122)|Colorectal(196;0.133)		BRCA - Breast invasive adenocarcinoma(108;0.0718)		GCTTTAGTTGGATCTTTCACC	0.308000													36	100					0	0	1	0	0
MCHR2	84539	broad.mit.edu	37	6	100403968	100403968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:100403968G>A	uc003pqh.1	-	2	371	c.56C>T	c.(55-57)TCC>TTC	p.S19F	MCHR2_uc003pqi.1_Missense_Mutation_p.S19F	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	19	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		TTTATTCCAGGATTTGTTTAA	0.423000													55	64					0	0	1	0	0
AIM1	202	broad.mit.edu	37	6	107016346	107016346	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:107016346G>A	uc003prh.2	+	20	5565	c.5078_splice	c.e20-1	p.G1693_splice	AIM1_uc003pri.2_Splice_Site_p.G497_splice	NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1								sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		CTTTCTTTTAGGGGGCACACA	0.393000													65	52					0	0	1	0	0
PDSS2	57107	broad.mit.edu	37	6	107780385	107780385	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:107780385C>T	uc003prt.2	-	1	395	c.105G>A	c.(103-105)GTG>GTA	p.V35V	PDSS2_uc011eak.1_Intron|PDSS2_uc011eal.1_Silent_p.V35V|PDSS2_uc003pru.2_Silent_p.V35V|PDSS2_uc003prv.2_Silent_p.V35V	NM_020381	NP_065114	Q86YH6	DLP1_HUMAN	prenyl diphosphate synthase, subunit 2	35					isoprenoid biosynthetic process|ubiquinone biosynthetic process	mitochondrion	protein heterodimerization activity			ovary(2)	2	Breast(9;0.0127)	all_cancers(87;3.63e-05)|Acute lymphoblastic leukemia(125;2.86e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.0108)|Colorectal(196;0.156)|Lung NSC(302;0.211)	BRCA - Breast invasive adenocarcinoma(8;0.0101)|all cancers(7;0.243)	BRCA - Breast invasive adenocarcinoma(108;0.112)|OV - Ovarian serous cystadenocarcinoma(136;0.173)|all cancers(137;0.191)		GCCAAGAGCCCACCGAGGAGA	0.632000											OREG0017595	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	93	59					0	0	1	0	0
ARMC2	84071	broad.mit.edu	37	6	109282807	109282807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:109282807G>A	uc003pss.3	+	14	2122	c.1948G>A	c.(1948-1950)GTG>ATG	p.V650M	ARMC2_uc011eao.1_Missense_Mutation_p.V485M	NM_032131	NP_115507	Q8NEN0	ARMC2_HUMAN	armadillo repeat containing 2	650	ARM 9.						binding				0		all_cancers(87;1.14e-07)|Acute lymphoblastic leukemia(125;2.3e-10)|all_hematologic(75;3.3e-08)|all_epithelial(87;0.000111)|Colorectal(196;0.03)|all_lung(197;0.11)		Epithelial(106;0.000197)|BRCA - Breast invasive adenocarcinoma(108;0.000236)|all cancers(137;0.000279)|OV - Ovarian serous cystadenocarcinoma(136;0.00434)		TGAGGAGCTGGTGATCAATGC	0.378000													15	36					0	0	1	0	0
SLC22A16	85413	broad.mit.edu	37	6	110777825	110777825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:110777825C>T	uc003puf.2	-	2	516	c.449G>A	c.(448-450)CGA>CAA	p.R150Q	SLC22A16_uc003pue.2_Missense_Mutation_p.R131Q|SLC22A16_uc003pug.2_Missense_Mutation_p.R150Q	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	150					acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		AAGCCATTTTCGGTCACAGAC	0.448000													20	32					0	0	1	0	0
ZUFSP	221302	broad.mit.edu	37	6	116988073	116988073	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:116988073A>C	uc003pxf.1	-	2	529	c.283T>G	c.(283-285)TGT>GGT	p.C95G	ZUFSP_uc010kef.1_Intron	NM_145062	NP_659499	Q96AP4	ZUFSP_HUMAN	zinc finger with UFM1-specific peptidase domain	95						intracellular	zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(226;0.0258)|all cancers(137;0.0368)|OV - Ovarian serous cystadenocarcinoma(136;0.0464)|Epithelial(106;0.186)		TTAGATGCACAACCTGAAAGA	0.333000													22	64					0	0	1	0	0
FAM184A	79632	broad.mit.edu	37	6	119295648	119295648	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:119295648C>T	uc003pyj.2	-	14	3208	c.2860G>A	c.(2860-2862)GAT>AAT	p.D954N	FAM184A_uc003pyk.3_Intron|FAM184A_uc003pyl.3_Intron|FAM184A_uc003pyi.2_RNA	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	954										ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						TTATTAAAATCTGCCCGCATG	0.338000													78	64					0	0	1	0	0
VNN2	8875	broad.mit.edu	37	6	133078922	133078922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:133078922G>A	uc003qdt.2	-	1	112	c.101C>T	c.(100-102)GCT>GTT	p.A34V	VNN2_uc003qds.2_5'Flank|VNN2_uc010kgb.2_Missense_Mutation_p.A34V|VNN2_uc003qdv.2_Intron	NM_004665	NP_004656	O95498	VNN2_HUMAN	vanin 2 isoform 1 precursor	34	CN hydrolase.				cellular component movement|pantothenate metabolic process	anchored to membrane|plasma membrane	pantetheine hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(155;0.00237)|GBM - Glioblastoma multiforme(226;0.0267)		CAAAATGACAGCATGTTCATA	0.428000													25	78					0	0	1	0	0
EYA4	2070	broad.mit.edu	37	6	133767884	133767884	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:133767884G>A	uc003qec.3	+	4	658	c.200G>A	c.(199-201)GGG>GAG	p.G67E	EYA4_uc011ecq.1_Missense_Mutation_p.G67E|EYA4_uc011ecr.1_Missense_Mutation_p.G67E|EYA4_uc003qed.3_Missense_Mutation_p.G67E|EYA4_uc003qee.3_Missense_Mutation_p.G67E|EYA4_uc011ecs.1_Missense_Mutation_p.G67E|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	67					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		ACTACAAATGGGACAGGAGGT	0.378000													30	32					0	0	1	0	0
HBS1L	10767	broad.mit.edu	37	6	135300379	135300380	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:135300379_135300380TC>GT	uc003qez.2	-	14	1831_1832	c.1624_1625GA>AC	c.(1624-1626)GAC>ACC	p.D542T	HBS1L_uc003qey.2_Missense_Mutation_p.D378T|HBS1L_uc011ecy.1_Missense_Mutation_p.D266T|HBS1L_uc011ecz.1_Missense_Mutation_p.D378T|HBS1L_uc011eda.1_Missense_Mutation_p.D500T	NM_006620	NP_006611	Q9Y450	HBS1L_HUMAN	Hsp70 subfamily B suppressor 1-like protein	542					signal transduction		GTP binding|GTPase activity|translation elongation factor activity			skin(2)	2	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0046)|GBM - Glioblastoma multiforme(68;0.00702)		TGCCGCCCAGTCGACAGGTTCA	0.431000													26	21					0	0	1	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599564	136599564	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:136599564T>C	uc003qgx.1	-	4	708	c.455A>G	c.(454-456)AAA>AGA	p.K152R	BCLAF1_uc003qgw.1_Missense_Mutation_p.K152R|BCLAF1_uc003qgy.1_Missense_Mutation_p.K150R|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.K150R	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	152					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		AACAGGAGATTTGCTATATGG	0.438000													37	70					0	0	1	0	0
ECT2L	345930	broad.mit.edu	37	6	139175232	139175232	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:139175232A>G	uc003qif.1	+	8	1242	c.1139A>G	c.(1138-1140)TAT>TGT	p.Y380C	ECT2L_uc011edq.1_Missense_Mutation_p.Y311C	NM_001077706	NP_001071174	Q008S8	ECT2L_HUMAN	epithelial cell transforming sequence 2	380					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity				0						TTAGGAAGCTATGTGGCCACT	0.433000													82	210					0	0	1	0	0
TXLNB	167838	broad.mit.edu	37	6	139591700	139591700	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:139591700G>T	uc011eds.1	-	4	745	c.580C>A	c.(580-582)CAA>AAA	p.Q194K		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	194	Potential.					cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		TTTTCTTTTTGAATTTGTACC	0.438000													34	17					2.09667e-21	2.13573e-21	1	1	0
SHPRH	257218	broad.mit.edu	37	6	146214476	146214476	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:146214476G>A	uc003qlf.2	-	28	5148	c.4749C>T	c.(4747-4749)CCC>CCT	p.P1583P	SHPRH_uc003qld.2_Silent_p.P1587P|SHPRH_uc003qle.2_Silent_p.P1587P	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	1583	Helicase C-terminal.				DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		CTGTGTGCAGGGGCAGCAGCA	0.403000													3	15					0	0	1	0	0
PLEKHG1	57480	broad.mit.edu	37	6	151121946	151121946	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:151121946C>T	uc003qny.1	+	7	1033	c.721C>T	c.(721-723)CTG>TTG	p.L241L	PLEKHG1_uc011eel.1_Silent_p.L281L|PLEKHG1_uc011eem.1_Silent_p.L300L|PLEKHG1_uc003qnz.2_Silent_p.L241L	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	241	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		CTCGCTGCCTCTGGGGTCCTA	0.502000													69	43					0	0	1	0	0
C6orf97	80129	broad.mit.edu	37	6	151894440	151894440	+	Silent	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:151894440T>A	uc003qol.2	+	6	995	c.906T>A	c.(904-906)TCT>TCA	p.S302S		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	302											0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		AGAAAAGCTCTTCTGAGTTGG	0.498000													28	52					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152826342	152826342	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:152826342G>A	uc010kiw.2	-	9	1374	c.772C>T	c.(772-774)CCT>TCT	p.P258S	SYNE1_uc003qot.3_Missense_Mutation_p.P265S|SYNE1_uc003qou.3_Missense_Mutation_p.P258S|SYNE1_uc010kjb.1_Missense_Mutation_p.P258S|SYNE1_uc003qpa.1_Missense_Mutation_p.P258S	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	258	Actin-binding.|CH 2.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTACCTTCAGGATCTAGCAGT	0.428000										HNSCC(10;0.0054)			22	38					0	0	1	0	0
OPRM1	4988	broad.mit.edu	37	6	154412543	154412543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:154412543G>A	uc003qpr.2	+	3	1337	c.1100G>A	c.(1099-1101)CGA>CAA	p.R367Q	OPRM1_uc011efc.1_Missense_Mutation_p.R286Q|OPRM1_uc011efd.1_Missense_Mutation_p.R267Q|OPRM1_uc011efe.1_Missense_Mutation_p.R460Q|OPRM1_uc003qpn.2_Missense_Mutation_p.R367Q|OPRM1_uc003qpo.1_Missense_Mutation_p.R367Q|OPRM1_uc011eff.1_Missense_Mutation_p.R367Q|OPRM1_uc011efg.1_Missense_Mutation_p.R367Q|OPRM1_uc011efh.1_Missense_Mutation_p.R367Q|OPRM1_uc003qpq.1_Missense_Mutation_p.R367Q|OPRM1_uc003qpt.1_Missense_Mutation_p.R367Q|OPRM1_uc011efi.1_Missense_Mutation_p.R367Q|OPRM1_uc003qpp.2_RNA|OPRM1_uc003qps.2_RNA|OPRM1_uc010kjg.2_Missense_Mutation_p.R267Q|OPRM1_uc003qpu.2_Missense_Mutation_p.R267Q	NM_000914	NP_000905	P35372	OPRM_HUMAN	opioid receptor, mu 1 isoform MOR-1	367	Cytoplasmic (Potential).				behavior|negative regulation of cell proliferation|sensory perception	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	mu-opioid receptor activity|protein binding			ovary(1)	1		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;9.26e-11)|BRCA - Breast invasive adenocarcinoma(81;0.0154)	Alfentanil(DB00802)|Anileridine(DB00913)|Buprenorphine(DB00921)|Butorphanol(DB00611)|Codeine(DB00318)|Dezocine(DB01209)|Diphenoxylate(DB01081)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Levallorphan(DB00504)|Levomethadyl Acetate(DB01227)|Levorphanol(DB00854)|Loperamide(DB00836)|Methadone(DB00333)|Methadyl Acetate(DB01433)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Oxymorphone(DB01192)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Remifentanil(DB00899)|Sufentanil(DB00708)|Tramadol(DB00193)	AACTCCACTCGAATTCGTCAG	0.443000													34	29					0	0	1	0	0
CNKSR3	154043	broad.mit.edu	37	6	154727768	154727768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:154727768C>T	uc003qpy.2	-	13	1893	c.1388G>A	c.(1387-1389)CGG>CAG	p.R463Q		NM_173515	NP_775786	Q6P9H4	CNKR3_HUMAN	CNKSR family member 3	463	DUF1170.				negative regulation of ERK1 and ERK2 cascade|negative regulation of peptidyl-serine phosphorylation|positive regulation of sodium ion transport	cytoplasm|membrane				ovary(2)|breast(1)|skin(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;5.03e-11)|BRCA - Breast invasive adenocarcinoma(81;0.00627)		ACTGAAATACCGGCAAAGGGC	0.428000													11	13					0	0	1	0	0
LPA	4018	broad.mit.edu	37	6	160953628	160953628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:160953628C>T	uc003qtl.2	-	39	6016	c.5896G>A	c.(5896-5898)GAA>AAA	p.E1966K		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4474	Peptidase S1.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TTGCACACTTCATTCTCAATA	0.423000													16	37					0	0	1	0	0
PLG	5340	broad.mit.edu	37	6	161132202	161132202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:161132202C>T	uc003qtm.3	+	4	449	c.386C>T	c.(385-387)TCC>TTC	p.S129F		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	129	Kringle 1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	AAATGGAGTTCCACTTCTCCC	0.348000													17	30					0	0	1	0	0
C6orf118	168090	broad.mit.edu	37	6	165703502	165703502	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:165703502A>G	uc003qum.3	-	7	1211	c.1175T>C	c.(1174-1176)GTT>GCT	p.V392A	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	392											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		CTTCTTTTCAACCTTCTCAGT	0.308000													7	20					0	0	1	0	0
SMOC2	64094	broad.mit.edu	37	6	169053761	169053761	+	Missense_Mutation	SNP	C	T	T	rs148539759		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:169053761C>T	uc003qws.1	+	11	1158	c.1138C>T	c.(1138-1140)CGC>TGC	p.R380C	SMOC2_uc003qwr.1_Missense_Mutation_p.R391C|SMOC2_uc011egu.1_Missense_Mutation_p.R57C	NM_022138	NP_071421	Q9H3U7	SMOC2_HUMAN	SPARC related modular calcium binding 2	380	EF-hand 1.				signal transduction	basement membrane	calcium ion binding			ovary(1)	1		Breast(66;0.000141)|Esophageal squamous(34;0.222)|Ovarian(120;0.231)		OV - Ovarian serous cystadenocarcinoma(33;1.31e-19)|BRCA - Breast invasive adenocarcinoma(81;3.06e-06)|GBM - Glioblastoma multiforme(31;0.00109)		GAGGTTCCTTCGCAAAAAATC	0.433000													36	22					0	0	1	0	0
PHF10	55274	broad.mit.edu	37	6	170110429	170110429	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:170110429G>A	uc011egy.1	-	9	1095	c.1016C>T	c.(1015-1017)TCT>TTT	p.S339F	PHF10_uc011egz.1_Missense_Mutation_p.S337F|PHF10_uc011eha.1_Missense_Mutation_p.S190F	NM_018288	NP_060758	Q8WUB8	PHF10_HUMAN	PHD finger protein 10 isoform a	339					nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	npBAF complex	zinc ion binding			urinary_tract(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.208)		OV - Ovarian serous cystadenocarcinoma(33;1.4e-21)|BRCA - Breast invasive adenocarcinoma(81;1.4e-07)|GBM - Glioblastoma multiforme(31;0.00176)		TCCCTGGAAAGAGTCCTCCTG	0.458000													38	38					0	0	1	0	0
RBAK	57786	broad.mit.edu	37	7	5104648	5104648	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:5104648C>T	uc010kss.1	+	6	1885	c.1561C>T	c.(1561-1563)CTT>TTT	p.L521F	LOC389458_uc003snr.2_Intron|RBAK_uc003sns.1_Missense_Mutation_p.L521F	NM_021163	NP_066986	Q9NYW8	RBAK_HUMAN	RB-associated KRAB repressor	521	Interaction with AR.|C2H2-type 10; degenerate.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(3)|kidney(1)|skin(1)	5		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0916)|OV - Ovarian serous cystadenocarcinoma(56;2.44e-14)		GAAAACCTTCCTTGTAAATTC	0.393000													55	39					0	0	1	0	0
TNRC18	84629	broad.mit.edu	37	7	5391461	5391461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:5391461G>A	uc003soi.3	-	17	5808	c.5459C>T	c.(5458-5460)TCG>TTG	p.S1820L	TNRC18_uc003soj.2_Missense_Mutation_p.S202L	NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	1820							DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		TTGGTCAAACGATTCCTCCGA	0.577000													11	24					0	0	1	0	0
TMEM196	256130	broad.mit.edu	37	7	19765303	19765303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:19765303G>A	uc011jyg.1	-	3	378	c.293C>T	c.(292-294)TCC>TTC	p.S98F	TMEM196_uc003sur.2_RNA	NM_152774	NP_689987	Q5HYL7	TM196_HUMAN	transmembrane protein 196	104						integral to membrane					0						GTATAGGGAGGAAGTTTTCTT	0.502000													22	28					0	0	1	0	0
CLK2P	1197	broad.mit.edu	37	7	23624993	23624993	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:23624993G>A	uc003swk.2	-	1	1154	c.504C>T	c.(502-504)ATC>ATT	p.I168I		NR_002711				SubName: Full=cDNA FLJ61616, highly similar to Dual specificity protein kinase CLK2 (EC 2.7.12.1); SubName: Full=CDC-like kinase 2, isoform CRA_c; SubName: Full=Putative uncharacterized protein CLK2;												0						TAGGACCCAAGATCCTTTCCA	0.488000													27	49					0	0	1	0	0
CLK2P	1197	broad.mit.edu	37	7	23625189	23625189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:23625189G>A	uc003swk.2	-	1	958	c.308C>T	c.(307-309)GCC>GTC	p.A103V		NR_002711				SubName: Full=cDNA FLJ61616, highly similar to Dual specificity protein kinase CLK2 (EC 2.7.12.1); SubName: Full=CDC-like kinase 2, isoform CRA_c; SubName: Full=Putative uncharacterized protein CLK2;												0						GTCAAAGGTGGCACTGCCAAA	0.517000													29	42					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23808674	23808674	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:23808674G>A	uc003sws.3	+	12	1544	c.1477G>A	c.(1477-1479)GAA>AAA	p.E493K	STK31_uc003swt.3_Missense_Mutation_p.E470K|STK31_uc011jze.1_Missense_Mutation_p.E493K|STK31_uc010kuq.2_Missense_Mutation_p.E470K	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	493							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						AAATTCTGATGAAATACTTAA	0.368000													11	34					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23826539	23826539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:23826539C>T	uc003sws.3	+	20	2550	c.2483C>T	c.(2482-2484)TCA>TTA	p.S828L	STK31_uc003swt.3_Missense_Mutation_p.S805L|STK31_uc011jze.1_Missense_Mutation_p.S828L|STK31_uc010kuq.2_Missense_Mutation_p.S805L|STK31_uc003swv.1_5'Flank	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	828	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						CCTTTAAATTCAGAAGTAAGT	0.303000													39	46					0	0	1	0	0
BMPER	168667	broad.mit.edu	37	7	34085940	34085940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:34085940G>A	uc011kap.1	+	7	713	c.599G>A	c.(598-600)AGA>AAA	p.R200K		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	200	VWFC 3.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						CAATGTGTGAGAGAAGTCTGT	0.423000													84	61					0	0	1	0	0
GLI3	2737	broad.mit.edu	37	7	42004786	42004786	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:42004786G>A	uc011kbh.1	-	15	3976	c.3885C>T	c.(3883-3885)TTC>TTT	p.F1295F	GLI3_uc011kbg.1_Silent_p.F1236F	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1295					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						CCGGCAGGCCGAAATTCAGCT	0.632000									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				53	47					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43447209	43447209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:43447209C>T	uc003tid.1	+	8	1285	c.680C>T	c.(679-681)CCT>CTT	p.P227L	HECW1_uc011kbi.1_Missense_Mutation_p.P227L|HECW1_uc003tie.1_Missense_Mutation_p.P259L	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	227	C2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						AACCCAGACCCTTATCTGAAG	0.438000													19	15					0	0	1	0	0
PGAM2	5224	broad.mit.edu	37	7	44105077	44105077	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:44105077G>A	uc003tjs.2	-	1	87	c.52C>T	c.(52-54)CAG>TAG	p.Q18*		NM_000290	NP_000281	P15259	PGAM2_HUMAN	phosphoglycerate mutase 2	18					gluconeogenesis|glycolysis|striated muscle contraction	cytosol	2,3-bisphospho-D-glycerate 2-phosphohydrolase activity|bisphosphoglycerate mutase activity				0						CGGTTCTCCTGGTTCCATGTG	0.627000													44	109					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48314082	48314082	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:48314082A>G	uc003toq.2	+	17	4844	c.4819A>G	c.(4819-4821)AGC>GGC	p.S1607G	ABCA13_uc010kyr.2_Missense_Mutation_p.S1110G	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	1607					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CCTTGCCTTCAGCTTATCTCA	0.348000													26	123					0	0	1	0	0
ZNF716	441234	broad.mit.edu	37	7	57522870	57522870	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:57522870C>T	uc011kdi.1	+	3	370	c.258C>T	c.(256-258)CAC>CAT	p.H86H		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						TAGCCAAACACCCAGGTAGGT	0.443000													37	33					0	0	1	0	0
ZNF716	441234	broad.mit.edu	37	7	57529366	57529366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:57529366G>A	uc011kdi.1	+	4	1311	c.1199G>A	c.(1198-1200)AGA>AAA	p.R400K		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						TACCACAAGAGAACTCATACT	0.403000													37	19					0	0	1	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72334363	72334363	+	RNA	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:72334363C>T	uc010lal.1	-	1		c.5293G>A				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						AATTGGGTTCCTCGGATTTCC	0.338000													3	6					0	0	1	0	0
ABHD11	83451	broad.mit.edu	37	7	73151384	73151384	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:73151384G>A	uc003tzb.2	-	5	747	c.690C>T	c.(688-690)TTC>TTT	p.F230F	RFC2_uc011kfa.1_Intron|ABHD11_uc011kfb.1_Silent_p.F173F|ABHD11_uc003tzc.2_Silent_p.F223F|ABHD11_uc003tza.2_Silent_p.F117F	NM_148912	NP_683710	Q8NFV4	ABHDB_HUMAN	abhydrolase domain containing 11 isoform 1	230							hydrolase activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				CCCTCCACACGAAGCGCCCGT	0.607000													53	137					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82579060	82579060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:82579060G>A	uc003uhx.2	-	6	11133	c.10844C>T	c.(10843-10845)TCC>TTC	p.S3615F	PCLO_uc003uhv.2_Missense_Mutation_p.S3615F|PCLO_uc010lec.2_Missense_Mutation_p.S580F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3546					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTGGGTGGGGAAGGAGCCAG	0.498000													51	36					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82579076	82579076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:82579076C>T	uc003uhx.2	-	6	11117	c.10828G>A	c.(10828-10830)GTA>ATA	p.V3610I	PCLO_uc003uhv.2_Missense_Mutation_p.V3610I|PCLO_uc010lec.2_Missense_Mutation_p.V575I	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3541					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCCAGCTGTACTGTGGAATCT	0.488000													23	56					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82582174	82582174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:82582174G>A	uc003uhx.2	-	5	8384	c.8095C>T	c.(8095-8097)CCT>TCT	p.P2699S	PCLO_uc003uhv.2_Missense_Mutation_p.P2699S|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2630					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGCTCTGGAGGAATTGTTATG	0.403000													8	22					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82584283	82584283	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:82584283A>G	uc003uhx.2	-	5	6275	c.5986T>C	c.(5986-5988)TCA>CCA	p.S1996P	PCLO_uc003uhv.2_Missense_Mutation_p.S1996P	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1927					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATCTGTTCTGAAAGTCTTATC	0.383000													52	49					0	0	1	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86509800	86509800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:86509800G>A	uc011kha.1	-	22	3262	c.3077C>T	c.(3076-3078)TCC>TTC	p.S1026F	KIAA1324L_uc003uif.1_Missense_Mutation_p.S786F|KIAA1324L_uc011kgz.1_Missense_Mutation_p.S912F|KIAA1324L_uc003uie.2_Missense_Mutation_p.S859F	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	1026	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					TATATTTGGGGATCTTGAGGT	0.348000													10	29					0	0	1	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86537023	86537023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:86537023G>A	uc011kha.1	-	18	2706	c.2521C>T	c.(2521-2523)CCT>TCT	p.P841S	KIAA1324L_uc003uif.1_Missense_Mutation_p.P601S|KIAA1324L_uc011kgz.1_Missense_Mutation_p.P727S|KIAA1324L_uc003uie.2_Missense_Mutation_p.P674S	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	841	Extracellular (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					GATTTAGTAGGATTACACCTC	0.363000													22	53					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87195442	87195442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:87195442G>A	uc003uiz.1	-	8	1064	c.646C>T	c.(646-648)CTT>TTT	p.L216F	ABCB1_uc011khc.1_Missense_Mutation_p.L152F	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	216	ABC transmembrane type-1 1.|Helical; (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	AAAATCACAAGGGTTAGCTTC	0.433000													25	49					0	0	1	0	0
RUNDC3B	154661	broad.mit.edu	37	7	87370828	87370828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:87370828G>A	uc003ujb.2	+	7	1024	c.613G>A	c.(613-615)GGA>AGA	p.G205R	RUNDC3B_uc011khd.1_Missense_Mutation_p.G188R|RUNDC3B_uc011khe.1_Missense_Mutation_p.G188R|RUNDC3B_uc003ujc.2_Missense_Mutation_p.G188R|RUNDC3B_uc003ujd.2_Missense_Mutation_p.G110R	NM_138290	NP_612147	Q96NL0	RUN3B_HUMAN	RUN domain containing 3B isoform a	205	RUN.									skin(1)	1	Esophageal squamous(14;0.00164)					CTGCCTAAAGGGAGAGGGGCT	0.289000													9	28					0	0	1	0	0
ZNF804B	219578	broad.mit.edu	37	7	88964946	88964946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:88964946G>A	uc011khi.1	+	4	3188	c.2650G>A	c.(2650-2652)GGA>AGA	p.G884R		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	884						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			TTGTGATCTGGGAAAAGTCAG	0.433000										HNSCC(36;0.09)			18	27					0	0	1	0	0
AKAP9	10142	broad.mit.edu	37	7	91630434	91630434	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:91630434C>T	uc003ulg.2	+	8	1428	c.1203C>T	c.(1201-1203)GTC>GTT	p.V401V	AKAP9_uc003ule.2_Silent_p.V413V|AKAP9_uc003ulf.2_Silent_p.V401V|AKAP9_uc003uli.2_Silent_p.V26V	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	413	Glu-rich.|Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TGGGGACAGTCGAAGAACTTC	0.234000			T	BRAF	papillary thyroid								29	26					0	0	1	0	0
PEG10	23089	broad.mit.edu	37	7	94293505	94293505	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:94293505C>T	uc011kie.1	+	2	1082	c.865C>T	c.(865-867)CAC>TAC	p.H289Y		NM_001040152	NP_001035242	Q86TG7	PEG10_HUMAN	paternally expressed 10 isoform RF1	213	Necessary for interaction with ALK1.				apoptosis|cell differentiation|negative regulation of transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_cancers(62;8.26e-10)|all_epithelial(64;5.59e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			CCTCAGCGACCACATTCAGGA	0.577000													53	154					0	0	1	0	0
NPTX2	4885	broad.mit.edu	37	7	98257818	98257818	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:98257818C>T	uc003upl.2	+	5	1350	c.1173C>T	c.(1171-1173)ATC>ATT	p.I391I		NM_002523	NP_002514	P47972	NPTX2_HUMAN	neuronal pentraxin II precursor	391	Pentaxin.				synaptic transmission	extracellular region	metal ion binding|sugar binding			central_nervous_system(2)|skin(1)	3	all_cancers(62;2.28e-09)|all_epithelial(64;4.86e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0128)|all_lung(186;0.0142)		STAD - Stomach adenocarcinoma(171;0.215)			TTGTCAACATCGCCAACTGCT	0.577000													14	18					0	0	1	0	0
TRRAP	8295	broad.mit.edu	37	7	98606063	98606064	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:98606063_98606064CC>TT	uc003upp.2	+	69	10984_10985	c.10775_10776CC>TT	c.(10774-10776)TCC>TTT	p.S3592F	TRRAP_uc011kis.1_Missense_Mutation_p.S3563F|TRRAP_uc003upr.2_Missense_Mutation_p.S3298F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3592	PI3K/PI4K.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TCTTCACTTTCCCTTGTGGAGA	0.619000													87	247					0	0	1	0	0
BUD31	8896	broad.mit.edu	37	7	99008806	99008806	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:99008806G>A	uc003uqf.2	+	3	292	c.91G>A	c.(91-93)GAA>AAA	p.E31K	PDAP1_uc003uqe.2_5'Flank|BUD31_uc011kiu.1_Missense_Mutation_p.E31K|BUD31_uc011kiv.1_Missense_Mutation_p.E31K|BUD31_uc003uqg.3_Missense_Mutation_p.E31K	NM_003910	NP_003901	P41223	BUD31_HUMAN	G10 protein	31					regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1	all_cancers(62;1.76e-08)|all_epithelial(64;1.63e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			AAAGATGAGAGAAGGTGAGTA	0.493000													30	24					0	0	1	0	0
PTCD1	26024	broad.mit.edu	37	7	99057785	99057785	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:99057785G>A	uc011kiw.1	-	2	89	c.45C>T	c.(43-45)GTC>GTT	p.V15V	ATP5J2_uc003uql.2_Silent_p.V15V|ATP5J2_uc003uqm.2_Silent_p.V21V|ATP5J2_uc003uqn.2_Silent_p.V15V|ATP5J2_uc003uqo.2_Silent_p.V21V	NM_015545	NP_056360	O75127	PTCD1_HUMAN	pentatricopeptide repeat domain 1	Error:Variant_position_missing_in_O75127_after_alignment										ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			CCCCCAGTTTGACCTCCAGAA	0.473000													103	219					0	0	1	0	0
ZNF498	221785	broad.mit.edu	37	7	99218999	99218999	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:99218999C>G	uc003url.1	+	5	718	c.391C>G	c.(391-393)CCA>GCA	p.P131A	ZNF498_uc003urm.1_5'UTR|ZNF498_uc010lge.1_5'UTR|ZNF498_uc003urn.2_RNA|ZNF498_uc010lgf.1_Missense_Mutation_p.P131A|ZNF498_uc003uro.1_5'UTR	NM_145115	NP_660090	Q6NSZ9	ZN498_HUMAN	zinc finger and SCAN domain containing 25	131					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_epithelial(64;1.95e-08)|Lung NSC(181;0.0066)|all_lung(186;0.011)|Esophageal squamous(72;0.0166)					TTCTTAGGTTCCATGCCACAG	0.522000													50	116					0	0	1	0	0
CYP3A7	1551	broad.mit.edu	37	7	99306852	99306852	+	Silent	SNP	C	T	T	rs115129932	by1000genomes	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:99306852C>T	uc003uru.2	-	11	1164	c.1059G>A	c.(1057-1059)TTG>TTA	p.L353L	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	353					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					CAAGATACTCCAACTGTAGCA	0.378000													13	38					0	0	1	0	0
FBXO24	26261	broad.mit.edu	37	7	100192755	100192755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:100192755C>T	uc003uvm.1	+	7	1276	c.983C>T	c.(982-984)ACC>ATC	p.T328I	FBXO24_uc003uvl.1_Intron|FBXO24_uc003uvn.1_Missense_Mutation_p.T23I|uc011kjy.1_Intron|FBXO24_uc011kjz.1_Missense_Mutation_p.T366I|FBXO24_uc011kka.1_Missense_Mutation_p.T316I	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	328						ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					GAGGTGCATACCCCAGGGGTG	0.607000													43	107					0	0	1	0	0
MOSPD3	64598	broad.mit.edu	37	7	100212554	100212554	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:100212554G>A	uc003uvq.2	+	5	778	c.576G>A	c.(574-576)GTG>GTA	p.V192V	MOSPD3_uc003uvr.2_Silent_p.V192V|MOSPD3_uc003uvs.2_Silent_p.V192V|MOSPD3_uc003uvt.2_Silent_p.V182V	NM_001040097	NP_001035186	O75425	MSPD3_HUMAN	motile sperm domain containing 3 isoform a	192	Helical; (Potential).					integral to membrane	structural molecule activity			ovary(2)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					TTGTGTCTGTGGCCTTCCTGC	0.612000													179	124					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100333389	100333389	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:100333389G>A	uc003uwj.2	+	3	265	c.100G>A	c.(100-102)GAC>AAC	p.D34N	ZAN_uc003uwk.2_Missense_Mutation_p.D34N|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	34	Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CAGCTCTAGGGACAACTGTGA	0.498000													4	20					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100391745	100391745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:100391745G>A	uc003uwj.2	+	45	8155	c.7990G>A	c.(7990-7992)GGC>AGC	p.G2664S	ZAN_uc003uwk.2_Intron|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Missense_Mutation_p.G612S	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2664	VWFC 5.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			TTTCTAGCTGGGCAGCAGCTT	0.642000													26	19					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	100551905	100551905	+	RNA	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:100551905G>A	uc003uxk.1	+	1		c.1156G>A			uc003uxl.1_Missense_Mutation_p.G119E					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		TTCACTAGGGGAAGTACGTCT	0.428000													74	555					0	0	1	0	0
RABL5	64792	broad.mit.edu	37	7	100958495	100958495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:100958495C>T	uc003uyl.2	-	5	581	c.478G>A	c.(478-480)GAA>AAA	p.E160K	RABL5_uc011kkk.1_Missense_Mutation_p.E83K|RABL5_uc011kkl.1_Missense_Mutation_p.E83K|RABL5_uc003uym.2_Missense_Mutation_p.E130K|RABL5_uc010lhw.2_RNA	NM_022777	NP_073614	Q9H7X7	RABL5_HUMAN	RAB, member RAS oncogene family-like 5 isoform	160							GTP binding				0	Lung NSC(181;0.215)					TTTATGAATTCCATCCGGATC	0.448000											OREG0018221	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	65					0	0	1	0	0
NAPEPLD	222236	broad.mit.edu	37	7	102769132	102769132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:102769132G>A	uc003vbc.2	-	2	420	c.92C>T	c.(91-93)TCC>TTC	p.S31F	NAPEPLD_uc003vbd.2_Missense_Mutation_p.S31F|NAPEPLD_uc011klj.1_Missense_Mutation_p.S104F|NAPEPLD_uc003vbe.2_RNA|NAPEPLD_uc003vbf.2_Missense_Mutation_p.S31F	NM_198990	NP_945341	Q6IQ20	NAPEP_HUMAN	N-acyl phosphatidylethanolamine phospholipase D	31					phospholipid catabolic process	membrane	metal ion binding			skin(1)	1						ACTTGCTCCGGAATTCCGTGC	0.388000													33	16					0	0	1	0	0
SLC26A5	375611	broad.mit.edu	37	7	103038452	103038452	+	Missense_Mutation	SNP	C	T	T	rs144199565		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:103038452C>T	uc003vbz.2	-	9	1134	c.898G>A	c.(898-900)GGA>AGA	p.G300R	SLC26A5_uc003vbt.1_Missense_Mutation_p.G300R|SLC26A5_uc003vbu.1_Missense_Mutation_p.G300R|SLC26A5_uc003vbv.1_Missense_Mutation_p.G300R|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.G300R|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	300	Helical; Name=7; (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						ATGCCAGTTCCCATTACGACC	0.363000													71	53					0	0	1	0	0
RINT1	60561	broad.mit.edu	37	7	105187408	105187408	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:105187408C>T	uc003vda.1	+	5	798	c.567C>T	c.(565-567)TCC>TCT	p.S189S	RINT1_uc010ljj.1_Intron	NM_021930	NP_068749	Q6NUQ1	RINT1_HUMAN	RAD50 interactor 1	189					cell cycle|G2/M transition DNA damage checkpoint|protein transport|vesicle-mediated transport	endoplasmic reticulum membrane	protein binding			ovary(3)|central_nervous_system(1)	4						AGGCAGCCTCCACTCTAGTGT	0.328000													58	42					0	0	1	0	0
PIK3CG	5294	broad.mit.edu	37	7	106526678	106526678	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:106526678T>G	uc003vdv.3	+	10	3056	c.2971T>G	c.(2971-2973)TTC>GTC	p.F991V	PIK3CG_uc003vdu.2_Missense_Mutation_p.F991V|PIK3CG_uc003vdw.2_Missense_Mutation_p.F991V	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	991	PI3K/PI4K.				G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						AACCCCTGACTTCCTCTTTGT	0.438000													15	42					0	0	1	0	0
DUS4L	11062	broad.mit.edu	37	7	107217950	107217950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:107217950C>T	uc003veh.2	+	8	1232	c.899C>T	c.(898-900)GCT>GTT	p.A300V	DUS4L_uc003veg.2_Missense_Mutation_p.A179V|DUS4L_uc011klw.1_RNA|DUS4L_uc011klx.1_Missense_Mutation_p.A179V|DUS4L_uc010ljl.2_Missense_Mutation_p.A210V|BCAP29_uc003vej.2_5'Flank|BCAP29_uc011kly.1_5'Flank|BCAP29_uc011klz.1_5'Flank	NM_181581	NP_853559	O95620	DUS4L_HUMAN	dihydrouridine synthase 4-like	300					tRNA processing		flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity				0						GTATTTAATGCTCTGTCAAGC	0.353000													31	71					0	0	1	0	0
DOCK4	9732	broad.mit.edu	37	7	111398779	111398779	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:111398779C>T	uc003vfx.2	-	40	4472	c.4203G>A	c.(4201-4203)CCG>CCA	p.P1401P	DOCK4_uc011kml.1_Silent_p.P282P|DOCK4_uc011kmm.1_Silent_p.P308P|DOCK4_uc003vfw.2_Silent_p.P851P|DOCK4_uc003vfy.2_Silent_p.P1446P	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1401	DHR-2.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				TGATGTTGTCCGGAACACCCT	0.438000													18	21					0	0	1	0	0
RNF133	168433	broad.mit.edu	37	7	122338182	122338182	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:122338182T>G	uc003vkj.1	-	1	1027	c.791A>C	c.(790-792)AAG>ACG	p.K264T	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron	NM_139175	NP_631914	Q8WVZ7	RN133_HUMAN	ring finger protein 133	264	RING-type; atypical.					endoplasmic reticulum membrane|integral to membrane	ligase activity|zinc ion binding			skin(1)	1						GTCATTAGGCTTATAGCGTTC	0.403000													8	98					0	0	1	0	0
LMOD2	442721	broad.mit.edu	37	7	123296237	123296237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:123296237G>A	uc003vky.2	+	1	377	c.220G>A	c.(220-222)GAA>AAA	p.E74K		NM_207163	NP_997046	Q6P5Q4	LMOD2_HUMAN	leiomodin 2 (cardiac)	74	Glu-rich.					cytoskeleton	actin binding|tropomyosin binding				0						GGCCTATTGGGAAAAGGAGTC	0.552000													7	9					0	0	1	0	0
UBE2H	7328	broad.mit.edu	37	7	129497352	129497352	+	Nonsense_Mutation	SNP	A	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:129497352A>C	uc003vpf.1	-	5	691	c.297T>G	c.(295-297)TAT>TAG	p.Y99*	UBE2H_uc003vpg.1_Intron	NM_003344	NP_003335	P62256	UBE2H_HUMAN	ubiquitin-conjugating enzyme E2H isoform 1	99					protein K11-linked ubiquitination|protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process		ATP binding|ubiquitin-protein ligase activity			skin(1)	1	Melanoma(18;0.0435)					CAAACTCACCATAGAGAGCTG	0.338000													33	73					0	0	1	0	0
AKR1B10	57016	broad.mit.edu	37	7	134217817	134217817	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:134217817T>C	uc003vrr.2	+	4	733	c.413T>C	c.(412-414)TTC>TCC	p.F138S		NM_020299	NP_064695	O60218	AK1BA_HUMAN	aldo-keto reductase family 1, member B10	138					cellular aldehyde metabolic process|digestion|steroid metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|protein binding			skin(5)	5						AAAGCAACGTTCTTGGATGCC	0.458000													36	117					0	0	1	0	0
BPGM	669	broad.mit.edu	37	7	134363695	134363695	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:134363695C>A	uc003vrv.2	+	4	1233	c.692C>A	c.(691-693)CCT>CAT	p.P231H	BPGM_uc003vrw.2_Missense_Mutation_p.P231H|BPGM_uc003vrx.2_Missense_Mutation_p.P231H	NM_199186	NP_954655	P07738	PMGE_HUMAN	bisphosphoglycerate mutase	231					glycolysis|respiratory gaseous exchange		2,3-bisphospho-D-glycerate 2-phosphohydrolase activity|bisphosphoglycerate mutase activity|phosphoglycerate mutase activity				0						GCTGTTGGGCCTCATCAGTTC	0.428000													39	96					3.54909e-21	3.6128e-21	1	1	0
CNOT4	4850	broad.mit.edu	37	7	135079073	135079073	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:135079073G>A	uc003vsv.1	-	10	1531	c.1224C>T	c.(1222-1224)TTC>TTT	p.F408F	CNOT4_uc003vss.2_Silent_p.F405F|CNOT4_uc011kpz.1_Silent_p.F405F|CNOT4_uc003vst.2_Silent_p.F408F|CNOT4_uc003vsu.1_Silent_p.F405F|CNOT4_uc011kpy.1_Silent_p.F408F	NM_001008225	NP_001008226	O95628	CNOT4_HUMAN	CCR4-NOT transcription complex, subunit 4	408					nuclear-transcribed mRNA poly(A) tail shortening|protein autoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	nucleotide binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding				0						GAGTGACATCGAAGGGATCAA	0.468000													61	56					0	0	1	0	0
NUP205	23165	broad.mit.edu	37	7	135282769	135282769	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:135282769C>T	uc003vsw.2	+	15	2119	c.2088C>T	c.(2086-2088)TCC>TCT	p.S696S		NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	696					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						AAATAGAATCCCGGTGTGAAG	0.403000													123	77					0	0	1	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138430021	138430021	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:138430021C>T	uc003vuf.2	-	13	1563	c.1325G>A	c.(1324-1326)TGG>TAG	p.W442*	ATP6V0A4_uc003vug.2_Nonsense_Mutation_p.W442*|ATP6V0A4_uc003vuh.2_Nonsense_Mutation_p.W442*	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	442	Lumenal (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						GAAGGTGTTCCAAATCTGGCC	0.512000													49	110					0	0	1	0	0
LUC7L2	51631	broad.mit.edu	37	7	139106912	139106912	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:139106912C>T	uc003vux.2	+	10	1379	c.1005C>T	c.(1003-1005)TCC>TCT	p.S335S	LUC7L2_uc011kqs.1_Silent_p.S332S|LUC7L2_uc011kqt.1_Silent_p.S401S|LUC7L2_uc003vuy.2_Silent_p.S334S|LUC7L2_uc003vva.2_Silent_p.S282S	NM_016019	NP_057103	Q9Y383	LC7L2_HUMAN	LUC7-like 2	335	Arg/Ser-rich.						enzyme binding|metal ion binding				0	Melanoma(164;0.242)					TTTTCAGATCCTCAAAAGAAA	0.363000													26	31					0	0	1	0	0
HIPK2	28996	broad.mit.edu	37	7	139313701	139313701	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:139313701G>A	uc003vvf.3	-	5	1606	c.1432C>T	c.(1432-1434)CAG>TAG	p.Q478*	HIPK2_uc003vvd.3_Nonsense_Mutation_p.Q478*	NM_022740	NP_073577	Q9H2X6	HIPK2_HUMAN	homeodomain interacting protein kinase 2 isoform	478	Protein kinase.|Interaction with DAXX.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation of BMP signaling pathway|positive regulation of JNK cascade|positive regulation of transforming growth factor beta receptor signaling pathway|SMAD protein signal transduction|transcription, DNA-dependent|virus-host interaction	centrosome|nuclear membrane|PML body	ATP binding|protein serine/threonine kinase activity|SMAD binding|transcription corepressor activity|virion binding			ovary(3)|central_nervous_system(3)|skin(1)	7	Melanoma(164;0.205)					AAGCTTACCTGGGCCATATCA	0.413000													10	4					0	0	1	0	0
PRSS1	5644	broad.mit.edu	37	7	142458565	142458565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:142458565C>T	uc003wak.2	+	2	217	c.200C>T	c.(199-201)TCC>TTC	p.S67F	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_Silent_p.V42V|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	67	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			TGCTACAAGTCGTAAGTGTGG	0.582000									Hereditary_Pancreatitis				33	69					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	142498745	142498745	+	RNA	SNP	C	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:142498745C>A	uc011ksh.1	+	3		c.124C>A			uc011ksi.1_RNA|uc003vzw.1_RNA|uc010loj.1_RNA|uc003wad.2_RNA|uc003wag.1_3'UTR|uc003wbe.3_RNA|uc003wbf.3_RNA|uc003wbg.3_RNA|uc003wbh.3_Missense_Mutation_p.P54T|uc003wbi.3_RNA|uc003wbj.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone:TCRVB.3.																		AAACGTGTTCCCACCCGAGGT	0.562000													6	89					8.24728e-16	8.36198e-16	1	1	0
KEL	3792	broad.mit.edu	37	7	142639585	142639585	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:142639585C>T	uc003wcb.2	-	18	2183	c.1973G>A	c.(1972-1974)GGG>GAG	p.G658E		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	658	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GACAGTCTCCCCATGGTGCCG	0.597000													9	19					0	0	1	0	0
GSTK1	373156	broad.mit.edu	37	7	142961652	142961653	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:142961652_142961653CC>TT	uc003wci.2	+	3	251_252	c.166_167CC>TT	c.(166-168)CCA>TTA	p.P56L	GSTK1_uc011ksy.1_Intron|GSTK1_uc003wcj.2_Missense_Mutation_p.P56L|GSTK1_uc011ksz.1_Missense_Mutation_p.P56L	NM_015917	NP_057001	Q9Y2Q3	GSTK1_HUMAN	glutathione S-transferase kappa 1 isoform a	56						outer membrane-bounded periplasmic space|peroxisome	glutathione transferase activity|identical protein binding|protein disulfide oxidoreductase activity				0	Melanoma(164;0.059)				Glutathione(DB00143)	AAACAAGCCTCCAGGTCTGCTT	0.530000													69	213					0	0	1	0	0
TAS2R60	338398	broad.mit.edu	37	7	143140905	143140905	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:143140905G>A	uc011ktg.1	+	1	360	c.360G>A	c.(358-360)GTG>GTA	p.V120V	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	120	Cytoplasmic (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					TCTATTGTGTGAAAATTGCTA	0.502000													106	84					0	0	1	0	0
LOC441294	441294	broad.mit.edu	37	7	143268938	143268938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:143268938C>T	uc011kth.1	+	1	49	c.28C>T	c.(28-30)CCC>TCC	p.P10S		NM_001008747	NP_001008747	A4D2H0	A4D2H0_HUMAN	hypothetical protein LOC441294	10											0	Melanoma(164;0.0903)					TACCCCTCAGCCCTACCTGGG	0.587000													25	25					0	0	1	0	0
OR2F2	135948	broad.mit.edu	37	7	143632538	143632538	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:143632538C>T	uc011ktv.1	+	1	213	c.213C>T	c.(211-213)GTC>GTT	p.V71V		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					TTGTCGATGTCTCCTATGCCA	0.512000													112	247					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147815211	147815211	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:147815211G>A	uc003weu.1	+	16	2901	c.2385G>A	c.(2383-2385)AGG>AGA	p.R795R		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	795	Extracellular (Potential).|Fibrinogen C-terminal.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TTCCCACAGGGAATTATTGGA	0.418000										HNSCC(39;0.1)			36	85					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	148964213	148964213	+	RNA	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:148964213C>T	uc003wfr.3	+	4		c.736C>T								Homo sapiens cDNA FLJ36716 fis, clone UTERU2010651.																		AACCAGACATCCTCACCCGGA	0.542000													28	49					0	0	1	0	0
ZNF777	27153	broad.mit.edu	37	7	149129486	149129486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:149129486G>A	uc003wfv.2	-	6	2040	c.1877C>T	c.(1876-1878)TCT>TTT	p.S626F		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	626					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			GCCGCTACCAGAGCTGGGTGA	0.667000													91	205					0	0	1	0	0
ZNF746	155061	broad.mit.edu	37	7	149191334	149191334	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:149191334G>A	uc003wfw.2	-	2	556	c.285C>T	c.(283-285)ATC>ATT	p.I95I	ZNF746_uc010lpi.2_Silent_p.I95I	NM_152557	NP_689770	Q6NUN9	ZN746_HUMAN	zinc finger protein 746 isoform 2	95					negative regulation of transcription, DNA-dependent|neuron death|regulation of cell death|transcription, DNA-dependent	cytoplasm|nucleus	transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|breast(1)	3	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			GCAGCCGCAGGATCCAGAAGT	0.677000													64	187					0	0	1	0	0
ZNF862	643641	broad.mit.edu	37	7	149558231	149558231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:149558231C>T	uc010lpn.2	+	7	2174	c.1982C>T	c.(1981-1983)CCT>CTT	p.P661L	ZNF862_uc003wgm.2_RNA	NM_001099220	NP_001092690	O60290	ZN862_HUMAN	zinc finger protein 862	661					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|nucleic acid binding|protein dimerization activity			skin(1)	1						ACTCTGGCCCCTCTCTACAGT	0.592000													31	25					0	0	1	0	0
HTR5A	3361	broad.mit.edu	37	7	154863050	154863050	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:154863050G>A	uc003wlu.1	+	1	505	c.441G>A	c.(439-441)ATG>ATA	p.M147I	uc011kvt.1_5'UTR|uc003wlt.2_5'UTR	NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	147	Cytoplasmic (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		CGCGCCACATGGAATACACGC	0.622000													45	113					0	0	1	0	0
HTR5A	3361	broad.mit.edu	37	7	154863263	154863263	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:154863263C>T	uc003wlu.1	+	1	718	c.654C>T	c.(652-654)TTC>TTT	p.F218F	uc011kvt.1_5'UTR|uc003wlt.2_5'UTR	NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	218	Helical; Name=5; (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		TGGTGCTCTTCGTGTACTGGA	0.592000													50	30					0	0	1	0	0
CNPY1	285888	broad.mit.edu	37	7	155301711	155301711	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:155301711C>T	uc003wmc.1	-	2	167	c.22G>A	c.(22-24)GAA>AAA	p.E8K		NM_001103176	NP_001096646	Q3B7I2	CNPY1_HUMAN	canopy 1 homolog	8											0	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		ACAGGGTCTTCCTCAAGCTTG	0.428000													51	46					0	0	1	0	0
RNF32	140545	broad.mit.edu	37	7	156447389	156447389	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:156447389G>A	uc003wmo.2	+	4	576	c.394G>A	c.(394-396)GAA>AAA	p.E132K	RNF32_uc010lql.1_RNA|RNF32_uc010lqm.2_Missense_Mutation_p.E132K|RNF32_uc003wmp.2_Missense_Mutation_p.E132K|RNF32_uc003wmq.2_Missense_Mutation_p.E132K|RNF32_uc003wmr.2_Missense_Mutation_p.E132K|RNF32_uc003wms.2_Missense_Mutation_p.E132K|RNF32_uc003wmu.2_RNA|RNF32_uc003wmt.2_Missense_Mutation_p.E132K	NM_030936	NP_112198	Q9H0A6	RNF32_HUMAN	ring finger protein 32	132	RING-type 1; atypical.					aggresome|endosome	protein binding|zinc ion binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00291)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		CATCTGTAAAGAAGAATTCGA	0.557000													52	57					0	0	1	0	0
LMBR1	64327	broad.mit.edu	37	7	156476796	156476796	+	Silent	SNP	T	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:156476796T>A	uc003wmw.3	-	17	1664	c.1449A>T	c.(1447-1449)GTA>GTT	p.V483V	LMBR1_uc003wmv.3_Silent_p.V277V|LMBR1_uc003wmx.3_Silent_p.V331V|LMBR1_uc010lqn.2_Silent_p.V524V|LMBR1_uc011kvx.1_Silent_p.V408V	NM_022458	NP_071903	Q8WVP7	LMBR1_HUMAN	limb region 1 protein	483	Cytoplasmic (Potential).					integral to membrane	receptor activity				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.208)		GATGCCCATTTACAGAAGGCT	0.433000													128	81					0	0	1	0	0
ARHGEF10	9639	broad.mit.edu	37	8	1828258	1828258	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:1828258G>C	uc003wpr.2	+	9	1066	c.888G>C	c.(886-888)AAG>AAC	p.K296N	ARHGEF10_uc003wpq.1_Missense_Mutation_p.K321N|ARHGEF10_uc003wps.2_Intron|ARHGEF10_uc003wpt.2_Intron|ARHGEF10_uc003wpv.2_Intron|ARHGEF10_uc010lre.2_5'Flank	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	321	Potential.				centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		ATGAGAAAAAGATGAGAGATT	0.493000													27	73					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2855666	2855666	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:2855666G>A	uc011kwk.1	-	54	8637	c.8247C>T	c.(8245-8247)TTC>TTT	p.F2749F	CSMD1_uc011kwj.1_Silent_p.F2078F|CSMD1_uc010lrg.2_Silent_p.F759F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2749	Extracellular (Potential).|Sushi 19.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGCCATTAGTGAATCCGTGGG	0.507000													59	111					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3216800	3216800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:3216800G>A	uc011kwk.1	-	21	3571	c.3181C>T	c.(3181-3183)CAC>TAC	p.H1061Y	CSMD1_uc011kwj.1_Missense_Mutation_p.H453Y|CSMD1_uc003wqe.2_Missense_Mutation_p.H217Y	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1061	Sushi 6.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ACACCAAAGTGAAAACCAATT	0.522000													18	26					0	0	1	0	0
MCPH1	79648	broad.mit.edu	37	8	6302456	6302456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:6302456C>T	uc003wqi.2	+	8	1281	c.1213C>T	c.(1213-1215)CTT>TTT	p.L405F	MCPH1_uc003wqh.2_Missense_Mutation_p.L405F|MCPH1_uc011kwl.1_Missense_Mutation_p.L357F	NM_024596	NP_078872	Q8NEM0	MCPH1_HUMAN	microcephalin	405						microtubule organizing center				central_nervous_system(1)|skin(1)	2		Hepatocellular(245;0.0663)		Colorectal(4;0.0505)		CCTGGAGGCTCTTAGCTGTGG	0.512000													52	31					0	0	1	0	0
SPAG11B	10407	broad.mit.edu	37	8	7320368	7320368	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:7320368G>A	uc003wrk.2	-	2	242	c.75C>T	c.(73-75)GCC>GCT	p.A25A	SPAG11B_uc003wrg.1_Silent_p.A25A|SPAG11B_uc003wrh.1_Silent_p.A25A|SPAG11B_uc003wrl.2_Silent_p.A25A|SPAG11B_uc003wrm.2_Silent_p.A25A	NM_016512	NP_057596	Q08648	SG11B_HUMAN	sperm associated antigen 11B isoform A	25					spermatogenesis	extracellular region					0				COAD - Colon adenocarcinoma(149;0.0162)|READ - Rectum adenocarcinoma(644;0.236)		TCACATGTCTGGCTTGAGACG	0.587000													41	144					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10469293	10469293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:10469293G>A	uc003wtc.2	-	4	2544	c.2315C>T	c.(2314-2316)TCG>TTG	p.S772L		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	772					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GGGGGCCGGCGAGCATGTCCT	0.662000													43	154					0	0	1	0	0
SLC18A1	6570	broad.mit.edu	37	8	20003309	20003309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:20003309C>T	uc011kyq.1	-	17	2014	c.1543G>A	c.(1543-1545)GAG>AAG	p.E515K	SLC18A1_uc003wzl.2_Missense_Mutation_p.E302K|SLC18A1_uc003wzm.2_Missense_Mutation_p.E515K|SLC18A1_uc011kyr.1_Missense_Mutation_p.G470E|SLC18A1_uc003wzn.2_Missense_Mutation_p.E483K|SLC18A1_uc010ltf.2_RNA|SLC18A1_uc003wzo.2_Missense_Mutation_p.E483K	NM_001135691	NP_001129163	P54219	VMAT1_HUMAN	solute carrier family 18 (vesicular monoamine),	515	Cytoplasmic (Potential).				neurotransmitter transport	clathrin sculpted monoamine transport vesicle membrane|integral to membrane|membrane fraction	drug transmembrane transporter activity|monoamine transmembrane transporter activity			ovary(2)	2				Colorectal(74;0.0747)		TCACTGTCCTCCCCCAGAGGA	0.547000													24	72					0	0	1	0	0
BMP1	649	broad.mit.edu	37	8	22051977	22051977	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:22051977G>A	uc003xbg.2	+	11	1561	c.1317G>A	c.(1315-1317)GTG>GTA	p.V439V	BMP1_uc003xba.2_Silent_p.V439V|BMP1_uc003xbb.2_Silent_p.V439V|BMP1_uc003xbe.2_RNA|BMP1_uc003xbc.2_Silent_p.V188V|BMP1_uc003xbd.2_RNA|BMP1_uc003xbf.2_Silent_p.V188V|BMP1_uc011kzc.1_Silent_p.V188V|BMP1_uc003xbh.2_RNA|BMP1_uc003xbi.2_RNA	NM_006129	NP_006120	P13497	BMP1_HUMAN	bone morphogenetic protein 1 isoform 3	439	CUB 2.				cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)	3				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		GGGGTGATGTGAAAAAGGACT	0.582000													38	84					0	0	1	0	0
MIR320A	407037	broad.mit.edu	37	8	22102540	22102540	+	RNA	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:22102540G>A	hsa-mir-320a|MI0000542	-			c.17G>A			uc011kzd.1_RNA|POLR3D_uc003xbl.2_5'Flank|POLR3D_uc003xbm.2_5'Flank|POLR3D_uc011kze.1_5'Flank																	0						GGAAGAGAAGGCGGAGGGGAG	0.657000													31	85					0	0	1	0	0
RHOBTB2	23221	broad.mit.edu	37	8	22864607	22864607	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:22864607C>T	uc003xcq.2	+	5	1386	c.849C>T	c.(847-849)ATC>ATT	p.I283I	RHOBTB2_uc003xcp.2_Silent_p.I305I|RHOBTB2_uc011kzp.1_Silent_p.I290I|uc003xcr.2_RNA	NM_015178	NP_055993	Q9BYZ6	RHBT2_HUMAN	Rho-related BTB domain containing 2 isoform 3	283	BTB 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			ovary(1)|lung(1)	2		Prostate(55;0.0513)|Breast(100;0.214)		Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		CCCACAAGATCTACCTCTCCA	0.662000													147	133					0	0	1	0	0
SLC25A37	51312	broad.mit.edu	37	8	23428959	23428959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:23428959C>T	uc003xdo.2	+	4	761	c.608C>T	c.(607-609)ACG>ATG	p.T203M	SLC25A37_uc003xdp.2_RNA|SLC25A37_uc010ltz.2_RNA|SLC25A37_uc003xdq.2_RNA|SLC25A37_uc003xdr.1_RNA|uc003xds.2_5'Flank	NM_016612	NP_057696	Q9NYZ2	MFRN1_HUMAN	solute carrier family 25, member 37	203	Helical; Name=4; (Potential).|Solcar 2.				ion transport|iron ion homeostasis	integral to membrane|mitochondrial inner membrane					0		Prostate(55;0.114)		Colorectal(74;0.0198)|COAD - Colon adenocarcinoma(73;0.0751)		AGCTACACCACGCAGCTGACC	0.602000													60	60					0	0	1	0	0
PTK2B	2185	broad.mit.edu	37	8	27278210	27278210	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:27278210C>T	uc003xfn.1	+	9	1228	c.420C>T	c.(418-420)TTC>TTT	p.F140F	PTK2B_uc003xfo.1_Silent_p.F140F|PTK2B_uc003xfp.1_Silent_p.F140F|PTK2B_uc003xfq.1_Silent_p.F140F	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	140	FERM.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		CAGAAGACTTCATGGAGAGCC	0.478000													56	130					0	0	1	0	0
CHRNA2	1135	broad.mit.edu	37	8	27320720	27320720	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:27320720C>T	uc010lur.2	-	6	1849	c.1240G>A	c.(1240-1242)GAG>AAG	p.E414K	CHRNA2_uc011lal.1_Missense_Mutation_p.E399K|CHRNA2_uc010lus.2_Missense_Mutation_p.E216K	NM_000742	NP_000733	Q15822	ACHA2_HUMAN	cholinergic receptor, nicotinic, alpha	414	Cytoplasmic.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)	1		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0208)|Epithelial(17;2.77e-10)|Colorectal(74;0.136)	Atracurium(DB00732)|Biperiden(DB00810)|Carbachol(DB00411)|Cisatracurium Besylate(DB00565)|Decamethonium(DB01245)|Dextromethorphan(DB00514)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Gallamine Triethiodide(DB00483)|Levallorphan(DB00504)|Mecamylamine(DB00657)|Metocurine(DB01336)|Metocurine Iodide(DB00416)|Mivacurium(DB01226)|Nicotine(DB00184)|Pancuronium(DB01337)|Pipecuronium(DB01338)|Rocuronium(DB00728)|Tubocurarine(DB01199)	ACCACCACCTCCCTCTCCTCG	0.667000													47	124					0	0	1	0	0
EPHX2	2053	broad.mit.edu	37	8	27362507	27362507	+	Silent	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:27362507G>T	uc003xfu.2	+	4	462	c.381G>T	c.(379-381)CTG>CTT	p.L127L	EPHX2_uc010lut.1_Silent_p.L127L|EPHX2_uc010luu.2_Silent_p.L127L|EPHX2_uc010luv.2_Silent_p.L61L|EPHX2_uc003xfv.2_Silent_p.L74L|EPHX2_uc010luw.2_Silent_p.L61L|EPHX2_uc011lam.1_5'UTR	NM_001979	NP_001970	P34913	HYES_HUMAN	epoxide hydrolase 2, cytoplasmic	127	Phosphatase.				aromatic compound catabolic process|cellular calcium ion homeostasis|drug metabolic process|inflammatory response|positive regulation of vasodilation|reactive oxygen species metabolic process|regulation of blood pressure|response to toxin|xenobiotic metabolic process	cytosol|focal adhesion|Golgi apparatus|nucleolus|peroxisome|soluble fraction	epoxide hydrolase activity|metal ion binding|protein homodimerization activity			ovary(1)	1		Ovarian(32;2.61e-05)|all_epithelial(46;0.207)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0226)|Epithelial(17;1.12e-09)|Colorectal(74;0.157)	Tamoxifen(DB00675)	ACACCTGGCTGGACGACCGTG	0.527000													26	31					1.02151e-06	1.03026e-06	1	1	0
UNC5D	137970	broad.mit.edu	37	8	35631958	35631958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:35631958G>A	uc003xjr.1	+	16	2948	c.2620G>A	c.(2620-2622)GAC>AAC	p.D874N	UNC5D_uc003xjs.1_Missense_Mutation_p.D869N|UNC5D_uc003xju.1_Missense_Mutation_p.D450N	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	874	Death.|Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		CAAAGGCAAGGACTGGCAGAT	0.468000													25	23					0	0	1	0	0
ADAM9	8754	broad.mit.edu	37	8	38947606	38947606	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:38947606C>T	uc003xmr.2	+	19	2187	c.2109C>T	c.(2107-2109)TTC>TTT	p.F703F	ADAM9_uc011lcf.1_RNA|ADAM9_uc011lcg.1_RNA|ADAM9_uc010lwr.2_Intron|ADAM9_uc003xms.2_RNA	NM_003816	NP_003807	Q13443	ADAM9_HUMAN	ADAM metallopeptidase domain 9 isoform 1	703	Helical; (Potential).				activation of MAPKK activity|cell-cell adhesion mediated by integrin|cell-matrix adhesion|keratinocyte differentiation|monocyte activation|PMA-inducible membrane protein ectodomain proteolysis|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell adhesion mediated by integrin|positive regulation of keratinocyte migration|positive regulation of macrophage fusion|positive regulation of membrane protein ectodomain proteolysis|positive regulation of protein secretion|response to calcium ion|response to glucocorticoid stimulus|response to hydrogen peroxide|response to manganese ion|response to tumor necrosis factor|transforming growth factor beta receptor signaling pathway	extracellular space|extracellular space|integral to membrane|intrinsic to external side of plasma membrane	collagen binding|integrin binding|laminin binding|metalloendopeptidase activity|protein kinase C binding|SH3 domain binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.0153)	LUSC - Lung squamous cell carcinoma(45;2.74e-07)			TGGTCTTCTTCTTCCTAATTG	0.378000													46	112					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41577211	41577211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:41577211C>T	uc003xok.2	-	10	1159	c.1075G>A	c.(1075-1077)GAT>AAT	p.D359N	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.D359N|ANK1_uc003xoj.2_Missense_Mutation_p.D359N|ANK1_uc003xol.2_Missense_Mutation_p.D359N|ANK1_uc003xom.2_Missense_Mutation_p.D392N	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	359	ANK 10.|89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GCCCCTTTATCCAGAAGGACC	0.622000													221	185					0	0	1	0	0
PLAT	5327	broad.mit.edu	37	8	42037793	42037793	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:42037793C>T	uc003xos.2	-	11	1398	c.1189G>A	c.(1189-1191)GAA>AAA	p.E397K	PLAT_uc010lxf.1_Missense_Mutation_p.E314K|PLAT_uc010lxg.1_Missense_Mutation_p.E222K|PLAT_uc003xot.2_Missense_Mutation_p.E351K|PLAT_uc011lcm.1_Missense_Mutation_p.E308K|PLAT_uc011lcn.1_Missense_Mutation_p.E271K	NM_000930	NP_000921	P00750	TPA_HUMAN	plasminogen activator, tissue isoform 1	397	Peptidase S1.				blood coagulation|fibrinolysis|negative regulation of proteolysis|protein modification process|proteolysis	cell surface|cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			breast(1)|skin(1)	2	all_cancers(6;3.84e-26)|all_epithelial(6;9.61e-28)|all_lung(13;7.2e-13)|Lung NSC(13;1.18e-11)|Ovarian(28;0.00438)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000378)|Lung NSC(58;0.00145)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;5.23e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00135)|Colorectal(10;0.00165)|Lung(22;0.00467)|COAD - Colon adenocarcinoma(11;0.0171)|LUSC - Lung squamous cell carcinoma(45;0.024)		Alteplase(DB00009)|Aminocaproic Acid(DB00513)|Anistreplase(DB00029)|Iloprost(DB01088)|Reteplase(DB00015)|Tenecteplase(DB00031)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	TCATCGAATTCCTTATGGACA	0.498000													88	250					0	0	1	0	0
HOOK3	84376	broad.mit.edu	37	8	42857277	42857277	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:42857277G>A	uc003xpr.2	+	17	1890	c.1648G>A	c.(1648-1650)GAA>AAA	p.E550K		NM_032410	NP_115786	Q86VS8	HOOK3_HUMAN	golgi-associated microtubule-binding protein	550	Potential.				cytoplasmic microtubule organization|early endosome to late endosome transport|endosome organization|endosome to lysosome transport|Golgi localization|interkinetic nuclear migration|lysosome organization|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome|protein transport	cis-Golgi network|FHF complex|microtubule|pericentriolar material	identical protein binding|microtubule binding			ovary(1)|breast(1)	2	Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.000105)|Lung NSC(58;0.000419)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.048)|LUSC - Lung squamous cell carcinoma(45;0.114)			GAAGCTTGAAGAACATCTGTA	0.333000			T	RET	papillary thyroid								16	53					0	0	1	0	0
PRKDC	5591	broad.mit.edu	37	8	48801704	48801704	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:48801704A>T	uc003xqi.2	-	34	4208	c.4151T>A	c.(4150-4152)TTC>TAC	p.F1384Y	PRKDC_uc003xqj.2_Missense_Mutation_p.F1384Y|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1384					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				TCCGATGTTGAAACCTATGCT	0.453000								NHEJ					45	27					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55542902	55542902	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:55542902G>A	uc003xsd.1	+	4	6608	c.6460G>A	c.(6460-6462)GAA>AAA	p.E2154K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	2154					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TAGAGAACAAGAAGATTTATA	0.313000													14	15					0	0	1	0	0
CHD7	55636	broad.mit.edu	37	8	61748751	61748751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:61748751C>T	uc003xue.2	+	16	4375	c.3898C>T	c.(3898-3900)CCA>TCA	p.P1300S		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1300	Helicase C-terminal.				central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			CAAGCTGCTGCCAAAACTGAA	0.502000													14	24					0	0	1	0	0
ZNF704	619279	broad.mit.edu	37	8	81582746	81582746	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:81582746G>A	uc003yby.1	-	5	883	c.651C>T	c.(649-651)ATC>ATT	p.I217I		NM_001033723	NP_001028895	Q6ZNC4	ZN704_HUMAN	zinc finger protein 704	217	C2H2-type.					intracellular	zinc ion binding				0	all_cancers(3;8.53e-08)|all_epithelial(4;4.59e-10)|Breast(3;2.56e-06)|Lung NSC(7;2.58e-06)|all_lung(9;9.4e-06)		BRCA - Breast invasive adenocarcinoma(6;0.00401)|Epithelial(68;0.00448)|all cancers(69;0.0277)			ACCCCAGATGGATGGTTCGGA	0.512000													82	61					0	0	1	0	0
ATP6V0D2	245972	broad.mit.edu	37	8	87162404	87162404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:87162404G>A	uc003ydp.1	+	6	772	c.703G>A	c.(703-705)GAA>AAA	p.E235K		NM_152565	NP_689778	Q8N8Y2	VA0D2_HUMAN	ATPase, H+ transporting, lysosomal 38kDa, V0	235					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	apical plasma membrane|endosome membrane|proton-transporting V-type ATPase, V0 domain|vacuolar proton-transporting V-type ATPase complex	hydrogen ion transmembrane transporter activity|protein binding				0						ATTGAGCAAAGAAGACCGAGA	0.448000													20	56					0	0	1	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885234	88885234	+	Silent	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:88885234C>G	uc003ydz.2	-	1	1063	c.966G>C	c.(964-966)GTG>GTC	p.V322V		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	322	WD 2.									ovary(1)	1						CTTCTTCGTTCACATGCACGG	0.542000													50	46					0	0	1	0	0
TMEM55A	55529	broad.mit.edu	37	8	92052877	92052877	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:92052877G>C	uc003yes.2	-	1	327	c.101C>G	c.(100-102)CCC>CGC	p.P34R		NM_018710	NP_061180	Q8N4L2	TM55A_HUMAN	transmembrane protein 55A	34						integral to membrane|late endosome membrane|lysosomal membrane	hydrolase activity				0			BRCA - Breast invasive adenocarcinoma(11;0.033)			CTTACCTCTGGGGCTGCTTTC	0.562000													25	126					0	0	1	0	0
KIAA1429	25962	broad.mit.edu	37	8	95504028	95504028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:95504028G>A	uc003ygo.1	-	22	4931	c.4918C>T	c.(4918-4920)CGT>TGT	p.R1640C	KIAA1429_uc010maz.1_Intron	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1640					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			TTTCTCTGACGAAAAATATCA	0.453000													17	71					0	0	1	0	0
KIAA1429	25962	broad.mit.edu	37	8	95524312	95524312	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:95524312G>A	uc003ygo.1	-	12	2770	c.2757C>T	c.(2755-2757)ATC>ATT	p.I919I	KIAA1429_uc003ygp.2_Silent_p.I919I|KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	919					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			TCAAGTTATCGATATTCTTTA	0.388000													9	43					0	0	1	0	0
UBR5	51366	broad.mit.edu	37	8	103266681	103266681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:103266681G>A	uc003ykr.1	-	59	8282	c.8249C>T	c.(8248-8250)CCC>CTC	p.P2750L	UBR5_uc003yks.1_Missense_Mutation_p.P2749L|UBR5_uc003ykq.2_Missense_Mutation_p.P261L	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	2750	Pro-rich.|HECT.				cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			TGTGATTGAGGGCATAGGCTG	0.413000													54	44					0	0	1	0	0
ODF1	4956	broad.mit.edu	37	8	103563995	103563995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:103563995G>A	uc003ykt.2	+	1	148	c.40G>A	c.(40-42)GAC>AAC	p.D14N		NM_024410	NP_077721	Q14990	ODFP1_HUMAN	outer dense fiber of sperm tails 1	14					cell differentiation|multicellular organismal development|spermatogenesis	outer dense fiber	structural molecule activity			ovary(2)	2	all_cancers(14;2.76e-05)|all_epithelial(15;4.54e-08)|Lung NSC(17;4.08e-05)|all_lung(17;9.15e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000125)|STAD - Stomach adenocarcinoma(118;0.0826)			TGTCAGAAGGGACATAAAGAA	0.473000													23	76					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813294	106813294	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:106813294C>T	uc003ymd.2	+	8	1007	c.984C>T	c.(982-984)TTC>TTT	p.F328F	ZFPM2_uc011lhs.1_Silent_p.F59F|uc003yme.1_5'Flank	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	328					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			TGGAAGAATTCCTGCCCCCTG	0.428000													41	128					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814835	106814835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:106814835G>A	uc003ymd.2	+	8	2548	c.2525G>A	c.(2524-2526)CGG>CAG	p.R842Q	ZFPM2_uc011lhs.1_Missense_Mutation_p.R573Q	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	842					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CAGTCTGAGCGGACGACCACG	0.463000													4	5					0	0	1	0	0
ANGPT1	284	broad.mit.edu	37	8	108509645	108509645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:108509645G>A	uc003ymn.2	-	1	610	c.142C>T	c.(142-144)CCA>TCA	p.P48S	ANGPT1_uc003ymo.2_Missense_Mutation_p.P48S	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	48					activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			TCGTGTTCTGGAAGAATGAAA	0.498000													26	70					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110431437	110431437	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:110431437C>T	uc003yne.2	+	22	2576	c.2472C>T	c.(2470-2472)TTC>TTT	p.F824F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	824	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CACAGTCCTTCTATGTGGATG	0.358000										HNSCC(38;0.096)			4	17					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110478816	110478816	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:110478816G>A	uc003yne.2	+	50	8527	c.8423G>A	c.(8422-8424)GGA>GAA	p.G2808E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2808	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GGGCACAAAGGACATACCGTC	0.403000										HNSCC(38;0.096)			7	5					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110530532	110530532	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:110530532C>T	uc003yne.2	+	73	11930	c.11826C>T	c.(11824-11826)TTC>TTT	p.F3942F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3942	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTGTTTCTTTCCAATTATCTG	0.353000										HNSCC(38;0.096)			22	52					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113841986	113841986	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:113841986C>T	uc003ynu.2	-	12	1947	c.1788G>A	c.(1786-1788)CTG>CTA	p.L596L	CSMD3_uc003ynt.2_Silent_p.L556L|CSMD3_uc011lhx.1_Silent_p.L492L	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	596	Extracellular (Potential).|CUB 3.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGCCAATCTCCAGATCAAATT	0.383000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			12	33					0	0	1	0	0
TRPS1	7227	broad.mit.edu	37	8	116631714	116631714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:116631714G>A	uc003ynz.2	-	2	1031	c.572C>T	c.(571-573)TCA>TTA	p.S191L	TRPS1_uc011lhy.1_Missense_Mutation_p.S195L|TRPS1_uc003yny.2_Missense_Mutation_p.S204L|TRPS1_uc010mcy.2_Missense_Mutation_p.S191L	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	191					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			ACCCCCATCTGAAGGCACTTG	0.488000									Langer-Giedion_syndrome				24	80					0	0	1	0	0
HAS2	3037	broad.mit.edu	37	8	122627011	122627011	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:122627011G>A	uc003yph.2	-	4	1535	c.997C>T	c.(997-999)CGA>TGA	p.R333*		NM_005328	NP_005319	Q92819	HAS2_HUMAN	hyaluronan synthase 2	333	Cytoplasmic (Potential).					integral to plasma membrane	hyaluronan synthase activity		HAS2/PLAG1(10)	soft_tissue(10)|ovary(5)	15	Lung NSC(37;3.12e-08)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)|all_neural(195;0.142)		STAD - Stomach adenocarcinoma(47;0.00503)			CACTTAGATCGAGCTGTGTAT	0.468000													63	33					0	0	1	0	0
ZHX2	22882	broad.mit.edu	37	8	123963952	123963952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:123963952G>A	uc003ypk.1	+	3	769	c.202G>A	c.(202-204)GAA>AAA	p.E68K		NM_014943	NP_055758	Q9Y6X8	ZHX2_HUMAN	zinc fingers and homeoboxes 2	68						cytoplasm|nucleus|plasma membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2	Lung NSC(37;2e-09)|Ovarian(258;0.0205)|Hepatocellular(40;0.105)		STAD - Stomach adenocarcinoma(47;0.00527)			ATCTATGGGGGAAAGCCAGTC	0.493000													35	24					0	0	1	0	0
ATAD2	29028	broad.mit.edu	37	8	124335307	124335307	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:124335307C>T	uc003yqh.3	-	27	4111	c.4003_splice	c.e27-1	p.N1335_splice	ATAD2_uc011lii.1_Splice_Site_p.N1126_splice|ATAD2_uc003yqi.3_Splice_Site	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2						regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			TCAAAAGATTCTAAAAGAAAA	0.333000													5	12					0	0	1	0	0
MYC	4609	broad.mit.edu	37	8	128750708	128750708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:128750708C>T	uc003ysh.1	+	3	713	c.200C>T	c.(199-201)TCC>TTC	p.S67F	MYC_uc003ysi.2_Missense_Mutation_p.S82F	NM_002467	NP_002458	P01106	MYC_HUMAN	myc proto-oncogene protein	67					branching involved in ureteric bud morphogenesis|cell cycle arrest|cell proliferation|cellular iron ion homeostasis|positive regulation of metanephric cap mesenchymal cell proliferation|positive regulation of transcription, DNA-dependent|regulation of telomere maintenance|regulation of transcription from RNA polymerase II promoter|response to drug	nucleolus|nucleoplasm	E-box binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(3)|ovary(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(1;6.19e-134)|all_epithelial(1;1.75e-119)|all_lung(1;5.66e-51)|Breast(1;1.08e-22)|all_neural(1;4.45e-21)|Medulloblastoma(1;1.88e-20)|Colorectal(1;1.92e-09)|Lung SC(1;4.52e-07)|Ovarian(5;0.000122)|Esophageal squamous(12;0.000995)|Renal(1;0.0921)|Hepatocellular(40;0.108)|Myeloproliferative disorder(2;0.135)|Melanoma(291;0.185)	Myeloproliferative disorder(644;0.0255)|Ovarian(118;0.0654)|Breast(495;0.212)|Acute lymphoblastic leukemia(644;0.22)	Epithelial(1;1.63e-94)|all cancers(1;5.82e-87)|OV - Ovarian serous cystadenocarcinoma(1;2.12e-71)|BRCA - Breast invasive adenocarcinoma(1;4.3e-14)|Lung(2;0.000381)|Colorectal(2;0.0102)|LUAD - Lung adenocarcinoma(14;0.0172)|READ - Rectum adenocarcinoma(2;0.0723)|LUSC - Lung squamous cell carcinoma(258;0.151)	KIRC - Kidney renal clear cell carcinoma(542;0.248)		AGCCGCCGCTCCGGGCTCTGC	0.692000		3	A|T	IGK@|BCL5|BCL7A |BTG1|TRA@|IGH@	Burkitt lymphoma| amplified in other cancers|B-CLL						OREG0018982	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	26					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139163495	139163495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:139163495C>T	uc003yuy.2	-	13	3394	c.3223G>A	c.(3223-3225)GGA>AGA	p.G1075R	FAM135B_uc003yux.2_Missense_Mutation_p.G976R|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.G637R|FAM135B_uc003yvb.2_Missense_Mutation_p.G637R	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1075										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GAAACAACTCCAAAGGATCCC	0.512000										HNSCC(54;0.14)			16	54					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139611102	139611102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:139611102C>T	uc003yvd.2	-	61	4672	c.4225G>A	c.(4225-4227)GGA>AGA	p.G1409R	COL22A1_uc011ljo.1_Missense_Mutation_p.G689R	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1409	Pro-rich.|Gly-rich.|Collagen-like 14.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TGGCCTTTTCCACCAGGAGGT	0.577000										HNSCC(7;0.00092)			8	44					0	0	1	0	0
FLJ43860	389690	broad.mit.edu	37	8	142487553	142487553	+	Silent	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:142487553A>G	uc003ywi.2	-	12	1476	c.1395T>C	c.(1393-1395)ACT>ACC	p.T465T	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	465							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			GCGTGCACAGAGTGTCCTGGG	0.672000													15	76					0	0	1	0	0
CYP11B2	1585	broad.mit.edu	37	8	143995794	143995794	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:143995794G>A	uc003yxk.1	-	5	843	c.840C>T	c.(838-840)TTC>TTT	p.F280F		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	280					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	GAGGGCGGTTGAAGGCCAGTT	0.547000									Familial_Hyperaldosteronism_type_I				14	33					0	0	1	0	0
EEF1D	1936	broad.mit.edu	37	8	144662304	144662305	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:144662304_144662305CC>TT	uc011lki.1	-	7	953_954	c.684_685GG>AA	c.(682-687)TGGGGG>TGAAGG	p.228_229WG>*R	NAPRT1_uc003yym.3_5'Flank|NAPRT1_uc003yyn.3_5'Flank|NAPRT1_uc011lkh.1_5'Flank|NAPRT1_uc003yyo.3_5'Flank|EEF1D_uc003yyp.1_Nonsense_Mutation_p.570_571WG>*R|EEF1D_uc003yyq.1_Nonsense_Mutation_p.644_645WG>*R|EEF1D_uc011lkj.1_Nonsense_Mutation_p.593_594WG>*R|EEF1D_uc003yyr.2_Nonsense_Mutation_p.594_595WG>*R|EEF1D_uc003yyt.2_Nonsense_Mutation_p.594_595WG>*R|EEF1D_uc011lkk.1_Nonsense_Mutation_p.228_229WG>*R|EEF1D_uc003yys.2_Nonsense_Mutation_p.228_229WG>*R|EEF1D_uc003yyv.2_Nonsense_Mutation_p.204_205WG>*R|EEF1D_uc003yyu.2_Nonsense_Mutation_p.228_229WG>*R|EEF1D_uc011lkl.1_Nonsense_Mutation_p.209_210WG>*R	NM_001130057	NP_001123529	P29692	EF1D_HUMAN	eukaryotic translation elongation factor 1 delta	228_229					positive regulation of I-kappaB kinase/NF-kappaB cascade	cytosol|eukaryotic translation elongation factor 1 complex	protein binding|signal transducer activity|translation elongation factor activity			ovary(1)|kidney(1)|skin(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.239)			TTGGAAGCCCCCCAGACCAGCC	0.619000													22	50					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144940221	144940221	+	Silent	SNP	G	A	A	rs71520550		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:144940221G>A	uc003zaa.1	-	2	15224	c.15211C>T	c.(15211-15213)CTG>TTG	p.L5071L		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	5071	Plectin 65.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCCCTCTGCAGAAGCTGCAGG	0.592000													38	115					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144941932	144941932	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:144941932G>A	uc003zaa.1	-	1	5503	c.5490C>T	c.(5488-5490)ATC>ATT	p.I1830I		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1830						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TCGTGGTGATGATTTCCAGCA	0.552000													176	116					0	0	1	0	0
PLEC	5339	broad.mit.edu	37	8	145012363	145012363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:145012363G>A	uc003zaf.1	-	3	801	c.631C>T	c.(631-633)CAC>TAC	p.H211Y	PLEC_uc003zab.1_Missense_Mutation_p.H74Y|PLEC_uc003zac.1_Missense_Mutation_p.H78Y|PLEC_uc003zad.2_Missense_Mutation_p.H74Y|PLEC_uc003zae.1_Missense_Mutation_p.H42Y|PLEC_uc003zag.1_Missense_Mutation_p.H52Y|PLEC_uc003zah.2_Missense_Mutation_p.H60Y|PLEC_uc003zaj.2_Missense_Mutation_p.H101Y	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	211	CH 1.|Globular 1.|Actin-binding.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						ATGAGGTTGTGGCCATCGCGG	0.682000													9	42					0	0	1	0	0
GPR172A	79581	broad.mit.edu	37	8	145583692	145583692	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:145583692C>T	uc003zcc.1	+	3	697	c.540C>T	c.(538-540)ACC>ACT	p.T180T	FBXL6_uc003zbz.2_5'Flank|FBXL6_uc003zca.2_5'Flank|FBXL6_uc003zcb.2_5'Flank|FBXL6_uc010mfx.2_5'Flank|GPR172A_uc003zcd.1_Silent_p.T180T|GPR172A_uc003zce.1_Silent_p.T180T|GPR172A_uc010mfy.1_Silent_p.T180T|GPR172A_uc003zcf.1_Silent_p.T180T|GPR172A_uc011llc.1_Silent_p.T92T	NM_024531	NP_078807	Q9HAB3	RFT3_HUMAN	G protein-coupled receptor 172A precursor	180						integral to plasma membrane	receptor activity|riboflavin transporter activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			TCAACGGCACCCCTGGCCCCC	0.672000													92	50					0	0	1	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145770925	145770925	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:145770925G>A	uc003zdt.1	-	7	2784	c.2229C>T	c.(2227-2229)GCC>GCT	p.A743A	ARHGAP39_uc011llk.1_Silent_p.A743A|ARHGAP39_uc003zds.1_Silent_p.A743A	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	743	MyTH4.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						AGAGCTCGCAGGCCTCCTTCT	0.637000													24	60					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14824048	14824048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:14824048G>A	uc003zlm.2	-	12	2734	c.2144C>T	c.(2143-2145)GCC>GTC	p.A715V	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	715	CSPG 4.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CAGCTCCAGGGCCGTAGGATT	0.428000													11	1					0	0	1	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18504864	18504864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:18504864G>A	uc003zne.3	+	2	228	c.101G>A	c.(100-102)GGC>GAC	p.G34D	ADAMTSL1_uc003znb.2_Missense_Mutation_p.G34D|ADAMTSL1_uc003znc.3_Missense_Mutation_p.G34D	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	34	TSP type-1 1.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		GACCGGGACGGCCTATGGGAT	0.587000													77	15					0	0	1	0	0
IFNA16	3449	broad.mit.edu	37	9	21217200	21217200	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:21217200C>T	uc003zor.1	-	1	111	c.105G>A	c.(103-105)AGG>AGA	p.R35R	IFNA14_uc003zoo.1_Intron	NM_002173	NP_002164	P05015	IFN16_HUMAN	interferon, alpha 16 precursor	35					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			skin(1)	1				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		TCAAGGCCCTCCTATTACCCA	0.507000													66	19					0	0	1	0	0
NOL6	65083	broad.mit.edu	37	9	33466067	33466067	+	Splice_Site	SNP	A	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:33466067A>G	uc003zsz.2	-	18	2465	c.2364_splice	c.e18+1	p.K788_splice	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zsy.2_5'Flank|NOL6_uc003zta.2_Intron|NOL6_uc010mjv.2_Splice_Site_p.K785_splice|NOL6_uc011lob.1_Splice_Site_p.K736_splice|NOL6_uc003ztb.1_Splice_Site_p.K788_splice	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform						rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		CACCAGCCTAACCTTAAGGAC	0.622000													55	9					0	0	1	0	0
UBAP1	51271	broad.mit.edu	37	9	34241423	34241423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:34241423C>T	uc003ztx.2	+	4	635	c.400C>T	c.(400-402)CGG>TGG	p.R134W	UBAP1_uc010mka.1_Missense_Mutation_p.R170W|UBAP1_uc003zty.2_Missense_Mutation_p.R134W|UBAP1_uc011loi.1_Missense_Mutation_p.R170W|UBAP1_uc011loj.1_Missense_Mutation_p.R198W|KIF24_uc010mkb.2_Intron|UBAP1_uc003ztz.2_Missense_Mutation_p.R134W	NM_016525	NP_057609	Q9NZ09	UBAP1_HUMAN	ubiquitin associated protein 1	134						cytoplasm					0			LUSC - Lung squamous cell carcinoma(29;0.00272)			CACACCAACTCGGGTCAGCAG	0.493000													61	7					0	0	1	0	0
RECK	8434	broad.mit.edu	37	9	36100427	36100427	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:36100427C>T	uc003zyv.2	+	11	1271	c.1185C>T	c.(1183-1185)ATC>ATT	p.I395I	RECK_uc003zyw.2_Silent_p.I267I|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	395						anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			TGCCATTTATCAATATACCTG	0.403000													25	10					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	68414233	68414233	+	RNA	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:68414233G>A	uc004aex.2	+	1		c.788G>A								Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763).																		CACCCACCAGGGGTgctaatt	0.353000													3	6					0	0	1	0	0
ZFAND5	7763	broad.mit.edu	37	9	74971949	74971949	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:74971949C>G	uc004aiv.2	-	5	669	c.391G>C	c.(391-393)GTT>CTT	p.V131L	ZFAND5_uc010mox.1_Missense_Mutation_p.V28L|ZFAND5_uc010moy.1_Missense_Mutation_p.V131L|ZFAND5_uc004aix.2_Missense_Mutation_p.V131L|ZFAND5_uc004aiw.2_Missense_Mutation_p.V131L|ZFAND5_uc004aiy.2_Missense_Mutation_p.V131L	NM_006007	NP_005998	O76080	ZFAN5_HUMAN	zinc finger, AN1-type domain 5	131							DNA binding|zinc ion binding				0						GGCTGAGAAACTGATGGACTG	0.378000													4	39					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79321135	79321135	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:79321135G>A	uc010mpk.2	-	8	6179	c.6055C>T	c.(6055-6057)CCT>TCT	p.P2019S	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2019					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CTGACAGCAGGAAAATTTTCT	0.433000													7	15					0	0	1	0	0
NTRK2	4915	broad.mit.edu	37	9	87342598	87342598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:87342598C>T	uc004aoa.1	+	11	1821	c.883C>T	c.(883-885)CCA>TCA	p.P295S	NTRK2_uc004anv.1_Intron|NTRK2_uc004any.1_Missense_Mutation_p.P295S|NTRK2_uc004anz.1_Missense_Mutation_p.P295S|NTRK2_uc011lsz.1_Missense_Mutation_p.P295S|NTRK2_uc011lta.1_Missense_Mutation_p.P295S|NTRK2_uc004aob.1_Missense_Mutation_p.P295S|NTRK2_uc011ltb.1_Missense_Mutation_p.P139S	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	295	Extracellular (Potential).|Ig-like C2-type 2.				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						TCTCGAATCTCCAACCTCAGA	0.443000										TSP Lung(25;0.17)			38	12					0	0	1	0	0
LOC286238	286238	broad.mit.edu	37	9	91262385	91262385	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:91262385C>T	uc010mql.1	-	2	391	c.258G>A	c.(256-258)CGG>CGA	p.R86R		NM_001100111	NP_001093581			hypothetical protein LOC286238												0						GAAGCATGTCCCGTGTCTGCC	0.433000													54	4					0	0	1	0	0
GALNT12	79695	broad.mit.edu	37	9	101594224	101594224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:101594224C>T	uc004ayz.2	+	4	902	c.902C>T	c.(901-903)CCC>CTC	p.P301L		NM_024642	NP_078918	Q8IXK2	GLT12_HUMAN	N-acetylgalactosaminyltransferase 12	301	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(1)|ovary(1)	2		Acute lymphoblastic leukemia(62;0.0559)				ATGCAATCCCCCGTCGATGTC	0.582000													26	4					0	0	1	0	0
OR13F1	138805	broad.mit.edu	37	9	107267485	107267485	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:107267485C>T	uc011lvm.1	+	1	942	c.942C>T	c.(940-942)TTC>TTT	p.F314F		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	314	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						ATACTGCCTTCATTTCCATCC	0.338000													35	5					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113170717	113170717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:113170717G>A	uc010mtz.2	-	38	7500	c.7163C>T	c.(7162-7164)TCC>TTC	p.S2388F	SVEP1_uc010mty.2_Missense_Mutation_p.S314F	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2388	Sushi 17.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GACACCAAAGGAAATTAGGGG	0.458000													23	6					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	118949681	118949681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:118949681G>A	uc004bjn.2	+	2	1045	c.664G>A	c.(664-666)GAA>AAA	p.E222K	PAPPA_uc011lxp.1_Missense_Mutation_p.E15K|PAPPA_uc011lxq.1_Missense_Mutation_p.E15K	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	222					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CACCTCTGGGGAACAAGTGGG	0.567000													24	50					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	119065134	119065134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:119065134G>A	uc004bjn.2	+	10	3433	c.3052G>A	c.(3052-3054)GGA>AGA	p.G1018R	PAPPA_uc011lxp.1_Missense_Mutation_p.G713R|PAPPA_uc011lxq.1_Missense_Mutation_p.G393R	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1018					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CACGCCCCAGGGATTCCTGGA	0.517000													53	14					0	0	1	0	0
ASTN2	23245	broad.mit.edu	37	9	119976887	119976887	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:119976887G>A	uc004bjs.1	-	3	866	c.765C>T	c.(763-765)ATC>ATT	p.I255I	ASTN2_uc004bjr.1_Silent_p.I255I|ASTN2_uc004bjt.1_Silent_p.I255I	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	255	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GCACAGATGGGATGTAGTGGA	0.622000													56	9					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	122075565	122075565	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:122075565G>A	uc004bkc.2	-	2	525	c.69C>T	c.(67-69)TCC>TCT	p.S23S	DBC1_uc004bkd.2_Silent_p.S23S	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	23					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GTTCCTGGTGGGAGGGCTGCA	0.512000													41	14					0	0	1	0	0
CEP110	11064	broad.mit.edu	37	9	123910972	123910972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:123910972C>T	uc004bkx.1	+	22	3513	c.3482C>T	c.(3481-3483)GCC>GTC	p.A1161V	CEP110_uc004bky.1_Missense_Mutation_p.A765V|CEP110_uc004bla.1_Missense_Mutation_p.A609V|CEP110_uc010mvo.1_5'UTR	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	1161					cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						AGTTCCCAGGCCACCAAGGAC	0.478000													47	6					0	0	1	0	0
OR1L1	26737	broad.mit.edu	37	9	125424116	125424116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:125424116G>A	uc011lza.1	+	1	272	c.272G>A	c.(271-273)GGA>GAA	p.G91E		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	91	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						ACAGTGATAGGAAACCTGCTT	0.493000													41	3					0	0	1	0	0
TTC16	158248	broad.mit.edu	37	9	130485509	130485509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:130485509G>A	uc004brq.1	+	7	836	c.769G>A	c.(769-771)GAT>AAT	p.D257N	PTRH1_uc011mah.1_Intron|TTC16_uc011mai.1_Missense_Mutation_p.D244N|TTC16_uc004brr.1_Missense_Mutation_p.D202N|TTC16_uc010mxn.1_5'UTR	NM_144965	NP_659402	Q8NEE8	TTC16_HUMAN	tetratricopeptide repeat domain 16	257	TPR 4.						binding				0						GGCGCGCCAAGATGCGGGGAT	0.637000													33	39					0	0	1	0	0
DDX31	64794	broad.mit.edu	37	9	135534100	135534100	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:135534100G>A	uc004cbq.1	-	6	1013	c.861C>T	c.(859-861)ATC>ATT	p.I287I	DDX31_uc010mzu.1_Silent_p.I287I|DDX31_uc004cbr.1_Silent_p.I287I|DDX31_uc004cbs.1_Silent_p.I287I	NM_022779	NP_073616	Q9H8H2	DDX31_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 31	287	Helicase ATP-binding.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(145;2.67e-06)|Epithelial(140;7.61e-05)		GGACCACAGGGATGCAATAGG	0.373000													50	10					0	0	1	0	0
DBH	1621	broad.mit.edu	37	9	136501805	136501805	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:136501805G>A	uc004cel.2	+	1	321	c.312G>A	c.(310-312)TGG>TGA	p.W104*		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	104	DOMON.|Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	TGGTGCTCTGGACCGATGGGG	0.607000													42	11					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137622308	137622308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:137622308C>T	uc004cfe.2	+	7	1533	c.1151C>T	c.(1150-1152)TCC>TTC	p.S384F		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	384	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GCCGACACCTCCAACTCCTCC	0.607000													60	13					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137653787	137653787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:137653787C>T	uc004cfe.2	+	19	2334	c.1952C>T	c.(1951-1953)TCC>TTC	p.S651F		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	651	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CCTGGTCCTTCCGGCCCACCA	0.577000													42	84					0	0	1	0	0
GRIN1	2902	broad.mit.edu	37	9	140058343	140058344	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:140058343_140058344GG>AA	uc004clk.2	+	18	2906_2907	c.2576_2577GG>AA	c.(2575-2577)CGG>CAA	p.R859Q	GRIN1_uc004cli.1_Missense_Mutation_p.R534Q|GRIN1_uc004clj.1_Missense_Mutation_p.R856Q|GRIN1_uc004cll.2_Missense_Mutation_p.R859Q|GRIN1_uc004clm.2_Missense_Mutation_p.R859Q|GRIN1_uc004cln.2_Missense_Mutation_p.R877Q|GRIN1_uc004clo.2_Missense_Mutation_p.R877Q	NM_007327	NP_015566	Q05586	NMDZ1_HUMAN	NMDA receptor 1 isoform NR1-3 precursor	859	Cytoplasmic (Potential).				ionotropic glutamate receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|regulation of excitatory postsynaptic membrane potential|response to ethanol|visual learning	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane|synaptic vesicle|synaptosome	calcium ion binding|calmodulin binding|extracellular-glutamate-gated ion channel activity|glutamate binding|glycine binding			skin(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;6.87e-05)|Epithelial(140;0.00095)	L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	AACGTGTGGCGGAAGAACCTGC	0.658000													39	7					0	0	1	0	0
C9orf167	54863	broad.mit.edu	37	9	140174065	140174065	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:140174065G>A	uc004cmn.2	+	2	1041	c.924G>A	c.(922-924)ACG>ACA	p.T308T	C9orf167_uc011mew.1_5'Flank	NM_017723	NP_060193	Q9NXH8	CI167_HUMAN	hypothetical protein LOC54863	308					chaperone mediated protein folding requiring cofactor	integral to membrane	ATP binding|nucleoside-triphosphatase activity			pancreas(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.137)	OV - Ovarian serous cystadenocarcinoma(145;9.07e-05)|Epithelial(140;0.000728)		CCGAGGTCACGCGCTTCGTGC	0.721000													6	11					0	0	1	0	0
ATXN3L	92552	broad.mit.edu	37	X	13338045	13338045	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:13338045G>A	uc010ned.2	-	1	474	c.9C>T	c.(7-9)TTC>TTT	p.F3F		NM_001135995	NP_001129467	Q9H3M9	ATX3L_HUMAN	ataxin 3-like	3	Josephin.				protein deubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ubiquitin-specific protease activity			lung(2)|ovary(2)|large_intestine(1)|skin(1)	6						CATGAAAGATGAAATCCATGT	0.433000													6	2					0	0	1	0	0
SCML2	10389	broad.mit.edu	37	X	18343095	18343095	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:18343095C>T	uc004cyl.2	-	4	251	c.94G>A	c.(94-96)GAT>AAT	p.D32N	SCML2_uc004cyk.3_RNA|SCML2_uc010nfd.1_Missense_Mutation_p.D32N|SCML2_uc011miz.1_Intron	NM_006089	NP_006080	Q9UQR0	SCML2_HUMAN	sex comb on midleg-like 2	32					anatomical structure morphogenesis	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(33;0.183)					CAGTGGAAATCATCTGGAAAA	0.363000													58	3					0	0	1	0	0
APOO	79135	broad.mit.edu	37	X	23899059	23899059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:23899059C>T	uc004dax.2	-	2	251	c.20G>A	c.(19-21)AGG>AAG	p.R7K	APOO_uc004daw.2_RNA|APOO_uc004day.3_RNA	NM_024122	NP_077027	Q9BUR5	APOO_HUMAN	apolipoprotein O precursor	7					lipid transport	high-density lipoprotein particle|integral to membrane|low-density lipoprotein particle|very-low-density lipoprotein particle					0						CCCCACGGACCTCTGAATTAC	0.478000													36	6					0	0	1	0	0
FAM48B1	100130302	broad.mit.edu	37	X	24382002	24382002	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:24382002G>A	uc011mjx.1	+	1	1125	c.1125G>A	c.(1123-1125)CAG>CAA	p.Q375Q		NM_001136234	NP_001129706			hypothetical protein LOC100130302											kidney(1)	1						AAGCCAGGCAGAAGAGCCAGA	0.557000													35	4					0	0	1	0	0
FAM47A	158724	broad.mit.edu	37	X	34148365	34148365	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:34148365C>T	uc004ddg.2	-	1	2064	c.2031G>A	c.(2029-2031)AGG>AGA	p.R677R		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	677										ovary(4)|central_nervous_system(1)	5						TGTGGAATTTCCTGCCCCAGT	0.433000													83	6					0	0	1	0	0
SYTL5	94122	broad.mit.edu	37	X	37913579	37913579	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:37913579G>T	uc004ddu.2	+	4	767	c.233G>T	c.(232-234)GGA>GTA	p.G78V	SYTL5_uc004ddv.2_Missense_Mutation_p.G78V|SYTL5_uc004ddx.2_Missense_Mutation_p.G78V	NM_001163335	NP_001156807	Q8TDW5	SYTL5_HUMAN	synaptotagmin-like 5 isoform 1	78	FYVE-type.|RabBD.				intracellular protein transport	membrane	metal ion binding|Rab GTPase binding			skin(1)	1						TTTGACCGGGGAGACCCTTGT	0.517000													55	5					4.64241e-40	4.76695e-40	1	1	0
TSPAN7	7102	broad.mit.edu	37	X	38420808	38420808	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:38420808G>A	uc004deg.3	+	1	78	c.9G>A	c.(7-9)TCG>TCA	p.S3S	TSPAN7_uc011mkj.1_5'UTR|TSPAN7_uc011mkk.1_Silent_p.S3S	NM_004615	NP_004606	P41732	TSN7_HUMAN	tetraspanin 7	3	Cytoplasmic (Potential).				interspecies interaction between organisms	integral to plasma membrane				ovary(1)	1						GTATGGCATCGAGGAGAATGG	0.428000													52	7					0	0	1	0	0
CACNA1F	778	broad.mit.edu	37	X	49087451	49087451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:49087451C>T	uc004dnb.2	-	4	444	c.382G>A	c.(382-384)GAG>AAG	p.E128K	CACNA1F_uc010nip.2_Missense_Mutation_p.E128K	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	128	I.|Extracellular (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	TCCACCTGCTCCTGGGGGTGG	0.637000													23	1					0	0	1	0	0
Unknown	0	broad.mit.edu	37	X	51150929	51150929	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:51150929C>T	uc004dpj.2	+	1	1163	c.1061C>T	c.(1060-1062)TCA>TTA	p.S354L		NM_203407	NP_981952			hypothetical protein LOC340602																		CAGCAAAGATCAGCCCTTCTC	0.622000													47	5					0	0	1	0	0
HUWE1	10075	broad.mit.edu	37	X	53573412	53573412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:53573412G>A	uc004dsp.2	-	70	11302	c.10900C>T	c.(10900-10902)CTT>TTT	p.L3634F	HUWE1_uc004dsn.2_Missense_Mutation_p.L2442F|HUWE1_uc004dsq.1_5'Flank	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	3634					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TGTTTACAAAGGGTATAACCC	0.353000													19	4					0	0	1	0	0
AWAT1	158833	broad.mit.edu	37	X	69455944	69455944	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:69455944G>A	uc004dxy.2	+	3	251	c.210G>A	c.(208-210)AGG>AGA	p.R70R		NM_001013579	NP_001013597	Q58HT5	AWAT1_HUMAN	wax synthase 1	70					lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	long-chain-alcohol O-fatty-acyltransferase activity			ovary(3)	3						CCTGGGTAAGGAACTGGTGTG	0.517000													38	5					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73070984	73070984	+	RNA	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:73070984C>T	uc004ebm.1	-	1		c.1605G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						ATGCAGCAATCCAGCACTGTC	0.512000													319	22					0	0	1	0	0
ZCCHC13	389874	broad.mit.edu	37	X	73524113	73524113	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:73524113G>A	uc004ebs.3	+	1	89	c.12G>A	c.(10-12)AAG>AAA	p.K4K		NM_203303	NP_976048	Q8WW36	ZCH13_HUMAN	zinc finger, CCHC domain containing 13	4	CCHC-type 1; degenerate.						nucleic acid binding|zinc ion binding				0						TGAGCAGTAAGGATTTCTTCG	0.612000													10	1					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73961642	73961642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:73961642C>T	uc004eby.2	-	3	3367	c.2750G>A	c.(2749-2751)GGA>GAA	p.G917E		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	917					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TTGGGAGGCTCCAAATTCACT	0.458000													19	3					0	0	1	0	0
ATRX	546	broad.mit.edu	37	X	76937974	76937974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:76937974G>A	uc004ecp.3	-	9	3006	c.2774C>T	c.(2773-2775)TCT>TTT	p.S925F	ATRX_uc004ecq.3_Missense_Mutation_p.S887F|ATRX_uc004eco.3_Missense_Mutation_p.S710F|ATRX_uc004ecr.2_Missense_Mutation_p.S857F|ATRX_uc010nlx.1_Missense_Mutation_p.S896F|ATRX_uc010nly.1_Missense_Mutation_p.S870F	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	925					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	CTCTTTCCCAGAAAGCTTATC	0.393000			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						68	13					0	0	1	0	0
PGAM4	441531	broad.mit.edu	37	X	77224716	77224716	+	Silent	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:77224716G>T	uc004ecy.1	-	1	420	c.420C>A	c.(418-420)CGC>CGA	p.R140R	ATP7A_uc004ecw.2_Intron|ATP7A_uc004ecx.3_Intron	NM_001029891	NP_001025062	Q8N0Y7	PGAM4_HUMAN	bisphosphoglycerate mutase 4	140					glycolysis		2,3-bisphospho-D-glycerate 2-phosphohydrolase activity|bisphosphoglycerate mutase activity|phosphoglycerate mutase activity				0						CTGCATACCTGCGATCCTTAC	0.527000													80	9					4.10028e-47	4.2216e-47	1	1	0
BRWD3	254065	broad.mit.edu	37	X	79945341	79945341	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:79945341G>A	uc004edt.2	-	33	3996	c.3733C>T	c.(3733-3735)CAG>TAG	p.Q1245*	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Nonsense_Mutation_p.Q841*|BRWD3_uc004edp.2_Nonsense_Mutation_p.Q1074*|BRWD3_uc004edq.2_Nonsense_Mutation_p.Q841*|BRWD3_uc010nmj.1_Nonsense_Mutation_p.Q841*|BRWD3_uc004edr.2_Nonsense_Mutation_p.Q915*|BRWD3_uc004eds.2_Nonsense_Mutation_p.Q841*|BRWD3_uc004edu.2_Nonsense_Mutation_p.Q915*|BRWD3_uc004edv.2_Nonsense_Mutation_p.Q841*|BRWD3_uc004edw.2_Nonsense_Mutation_p.Q841*|BRWD3_uc004edx.2_Nonsense_Mutation_p.Q841*|BRWD3_uc004edy.2_Nonsense_Mutation_p.Q841*|BRWD3_uc004edz.2_Nonsense_Mutation_p.Q915*|BRWD3_uc004eea.2_Nonsense_Mutation_p.Q915*|BRWD3_uc004eeb.2_Nonsense_Mutation_p.Q841*	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	1245										ovary(4)	4						GTACAGCTCTGATCCCTAAGA	0.274000													11	0					0	0	1	0	0
ZNF711	7552	broad.mit.edu	37	X	84520260	84520260	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:84520260C>T	uc004eeo.2	+	6	1262	c.915C>T	c.(913-915)ATC>ATT	p.I305I	ZNF711_uc004eep.2_Silent_p.I305I|ZNF711_uc004eeq.2_Silent_p.I305I|ZNF711_uc011mqy.1_5'UTR	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	305					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						AAGATGATATCAGTAAGAAAA	0.393000													26	3					0	0	1	0	0
POF1B	79983	broad.mit.edu	37	X	84562262	84562262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:84562262C>T	uc004eer.2	-	11	1217	c.1071G>A	c.(1069-1071)ATG>ATA	p.M357I	POF1B_uc004ees.2_Missense_Mutation_p.M357I	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	357	Potential.						actin binding				0						TCTCAAGTCTCATCTTGTCAT	0.338000													9	0					0	0	1	0	0
TCEAL3	85012	broad.mit.edu	37	X	102864560	102864560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:102864560G>A	uc004ekq.2	+	3	830	c.568G>A	c.(568-570)GGC>AGC	p.G190S	TCEAL3_uc004ekr.2_Missense_Mutation_p.G190S	NM_001006933	NP_001006934	Q969E4	TCAL3_HUMAN	transcription elongation factor A (SII)-like 3	190					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						TGGAGGTAGGGGCCAGAGGGG	0.517000													9	185					0	0	1	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	104512186	104512186	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:104512186G>A	uc004elz.1	+	5	1415	c.659G>A	c.(658-660)GGA>GAA	p.G220E		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	220	Ig-like C2-type 2.|Extracellular (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						AAATATGAAGGAAAACTTGTA	0.333000													34	2					0	0	1	0	0
AMOT	154796	broad.mit.edu	37	X	112022406	112022406	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:112022406C>T	uc004epr.2	-	10	2976	c.2976G>A	c.(2974-2976)GCG>GCA	p.A992A	AMOT_uc004eps.2_Silent_p.A583A|AMOT_uc011mtc.1_Silent_p.A232A	NM_001113490	NP_001106962	Q4VCS5	AMOT_HUMAN	angiomotin isoform 1	992					actin cytoskeleton organization|cell-cell junction assembly|negative regulation of angiogenesis|negative regulation of vascular permeability|positive regulation of blood vessel endothelial cell migration|positive regulation of cell size|positive regulation of stress fiber assembly|regulation of cell migration	actin filament|cell surface|cytoplasm|endocytic vesicle|external side of plasma membrane|integral to membrane|lamellipodium|ruffle|stress fiber|tight junction|tight junction	angiostatin binding|protein binding|receptor activity			ovary(1)	1						AAGCCTGAGCCGCTGCTGGAG	0.448000													20	2					0	0	1	0	0
DOCK11	139818	broad.mit.edu	37	X	117714068	117714068	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:117714068G>A	uc004eqp.2	+	14	1584	c.1521G>A	c.(1519-1521)CAG>CAA	p.Q507Q	DOCK11_uc004eqq.2_Silent_p.Q273Q	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	507					blood coagulation	cytosol	GTP binding			ovary(3)	3						AGACGGCCCAGAAGGTGCACA	0.463000													27	5					0	0	1	0	0
IL13RA1	3597	broad.mit.edu	37	X	117892165	117892165	+	Silent	SNP	A	G	G	rs142695639		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:117892165A>G	uc004eqs.2	+	5	679	c.636A>G	c.(634-636)AAA>AAG	p.K212K	IL13RA1_uc004eqr.1_Silent_p.K212K|IL13RA1_uc004eqt.1_Silent_p.K212K	NM_001560	NP_001551	P78552	I13R1_HUMAN	interleukin 13 receptor, alpha 1 precursor	212	Extracellular (Potential).					interleukin-13 receptor complex	cytokine receptor activity				0						ATGCAGGAAAAATTAAACCAT	0.358000													15	78					0	0	1	0	0
GRIA3	2892	broad.mit.edu	37	X	122538687	122538687	+	Silent	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:122538687C>T	uc004etq.3	+	11	1715	c.1422C>T	c.(1420-1422)ATC>ATT	p.I474I	GRIA3_uc004etr.3_Silent_p.I474I|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Silent_p.I458I	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	474	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	AATTGTCCATCGTTGGTGACG	0.418000													117	10					0	0	1	0	0
GPR119	139760	broad.mit.edu	37	X	129518896	129518896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:129518896G>A	uc011muv.1	-	1	526	c.526C>T	c.(526-528)CCA>TCA	p.P176S		NM_178471	NP_848566	Q8TDV5	GP119_HUMAN	G protein-coupled receptor 119	176	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	lipid binding			ovary(2)	2						AGCATGGCTGGGAAGAAGCCA	0.527000													55	4					0	0	1	0	0
OR13H1	347468	broad.mit.edu	37	X	130678703	130678703	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:130678703G>A	uc011muw.1	+	1	656	c.656G>A	c.(655-657)CGA>CAA	p.R219Q	IGSF1_uc004ewf.2_Intron	NM_001004486	NP_001004486	Q8NG92	O13H1_HUMAN	olfactory receptor, family 13, subfamily H,	219	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Acute lymphoblastic leukemia(192;0.000636)					TCCTACATACGAATTGCTATG	0.483000													144	11					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135431695	135431695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:135431695G>A	uc004ezu.1	+	6	6121	c.5830G>A	c.(5830-5832)GGA>AGA	p.G1944R	GPR112_uc010nsb.1_Missense_Mutation_p.G1739R|GPR112_uc010nsc.1_Missense_Mutation_p.G1711R	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1944	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TCCTATGTCAGGAATTCTTCC	0.423000													44	4					0	0	1	0	0
ARHGEF6	9459	broad.mit.edu	37	X	135764126	135764126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:135764126C>T	uc004fab.2	-	14	1943	c.1481G>A	c.(1480-1482)GGA>GAA	p.G494E	ARHGEF6_uc011mwd.1_Missense_Mutation_p.G367E|ARHGEF6_uc011mwe.1_Missense_Mutation_p.G340E	NM_004840	NP_004831	Q15052	ARHG6_HUMAN	Rac/Cdc42 guanine nucleotide exchange factor 6	494	PH.				apoptosis|cell junction assembly|induction of apoptosis by extracellular signals|JNK cascade|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity				0	Acute lymphoblastic leukemia(192;0.000127)					TGGTATTTTTCCCTATTAGAA	0.358000													22	28					0	0	1	0	0
F9	2158	broad.mit.edu	37	X	138644168	138644168	+	Missense_Mutation	SNP	G	A	A	rs137852267		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:138644168G>A	uc004fas.1	+	8	1353	c.1324G>A	c.(1324-1326)GGA>AGA	p.G442R	F9_uc004fat.1_Missense_Mutation_p.G404R	NM_000133	NP_000124	P00740	FA9_HUMAN	coagulation factor IX preproprotein	442	Peptidase S1.		G -> R (in HEMB; severe; Angers).|G -> E (in HEMB).		blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen|plasma membrane	calcium ion binding|serine-type endopeptidase activity			lung(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;0.000127)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Heparin(DB01109)|Menadione(DB00170)	AGGCAAATATGGAATATATAC	0.398000													44	6					0	0	1	0	0
SPANXN3	139067	broad.mit.edu	37	X	142605181	142605181	+	Silent	SNP	C	T	T	rs148202641		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:142605181C>T	uc004fbw.2	-	1	127	c.39G>A	c.(37-39)ACG>ACA	p.T13T		NM_001009609	NP_001009609	Q5MJ09	SPXN3_HUMAN	SPANX-N3 protein	13										ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AGGGGCTCTTCGTCTTCTCCC	0.323000													91	11					0	0	1	0	0
GABRA3	2556	broad.mit.edu	37	X	151336913	151336913	+	Silent	SNP	G	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:151336913G>T	uc010ntk.1	-	10	1506	c.1266C>A	c.(1264-1266)CCC>CCA	p.P422P		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	422	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	AGGAGGCACTGGGAGCAGCGC	0.542000													13	167					3.41278e-10	3.44655e-10	1	1	0
GABRA3	2556	broad.mit.edu	37	X	151514067	151514067	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:151514067C>T	uc010ntk.1	-	3	488	c.248G>A	c.(247-249)CGA>CAA	p.R83Q		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	83	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	AAGCCCAGGTCGCAGCCGGTT	0.453000													40	9					0	0	1	0	0
PLXNB3	5365	broad.mit.edu	37	X	153035694	153035694	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:153035694C>T	uc004fii.2	+	8	1951	c.1777C>T	c.(1777-1779)CCA>TCA	p.P593S	PLXNB3_uc011mzb.1_Missense_Mutation_p.P129S|PLXNB3_uc011mzc.1_Missense_Mutation_p.P275S|PLXNB3_uc010nuk.2_Missense_Mutation_p.P616S|PLXNB3_uc011mzd.1_Missense_Mutation_p.P232S	NM_005393	NP_005384	Q9ULL4	PLXB3_HUMAN	plexin B3 isoform 1	593	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	protein binding|receptor activity			lung(1)	1	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					ACTTAACCCTCCAGGCACAGG	0.637000													66	6					0	0	1	0	0
PLXNA3	55558	broad.mit.edu	37	X	153695452	153695453	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:153695452_153695453CC>TT	uc004flm.2	+	18	3333_3334	c.3160_3161CC>TT	c.(3160-3162)CCC>TTC	p.P1054F		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	1054	IPT/TIG 3.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GGTCCAGGAGCCCCGGGTCCGT	0.673000													127	17					0	0	1	0	0
F8	2157	broad.mit.edu	37	X	154088746	154088746	+	Silent	SNP	G	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:154088746G>A	uc004fmt.2	-	25	7032	c.6861C>T	c.(6859-6861)GGC>GGT	p.G2287G	F8_uc004fms.2_Silent_p.G152G	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	2287	F5/8 type C 2.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TCCACTGATGGCCATCTTGAC	0.393000													81	8					0	0	1	0	0
F8	2157	broad.mit.edu	37	X	154185346	154185346	+	Silent	SNP	C	G	G			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:154185346C>G	uc004fmt.2	-	11	1809	c.1638G>C	c.(1636-1638)CGG>CGC	p.R546R		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	546	F5/8 type A 2.|Plastocyanin-like 3.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GGGTCAGGCACCGAGGATCTG	0.413000													98	12					0	0	1	0	0
ZBTB48	3104	broad.mit.edu	37	1	6648404	6648405	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:6648404_6648405delAG	uc009vmc.1	+	9	1706_1707	c.1583_1584delAG	c.(1582-1584)CAGfs	p.Q528fs	ZBTB48_uc001anx.2_Frame_Shift_Del_p.Q528fs|ZBTB48_uc009vmd.1_Frame_Shift_Del_p.Q528fs|ZBTB48_uc001any.1_Frame_Shift_Del_p.Q166fs	NM_005341	NP_005332	P10074	ZBT48_HUMAN	zinc finger and BTB domain containing 48	528	C2H2-type 9.					cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;7.39e-28)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;1.35e-07)|COAD - Colon adenocarcinoma(227;1.36e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|BRCA - Breast invasive adenocarcinoma(304;0.00109)|STAD - Stomach adenocarcinoma(132;0.017)|READ - Rectum adenocarcinoma(331;0.0642)		TTCTGTGAACAGCGCTTCACTG	0.629													34	51	---	---	---	---					
CLCN6	1185	broad.mit.edu	37	1	11889301	11889302	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:11889301_11889302delTG	uc001ate.3	+	13	1283_1284	c.1170_1171delTG	c.(1168-1173)TTTGTGfs	p.F390fs	CLCN6_uc009vnh.1_Frame_Shift_Del_p.C335fs|CLCN6_uc010oat.1_Frame_Shift_Del_p.F106fs|CLCN6_uc010oau.1_Frame_Shift_Del_p.F368fs	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	390_391	Helical; (By similarity).				cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		TGGTGGTGTTTGTGGCCTCGAT	0.525													89	219	---	---	---	---					
KLHDC7A	127707	broad.mit.edu	37	1	18809692	18809693	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:18809692_18809693delCT	uc001bax.2	+	1	2269_2270	c.2217_2218delCT	c.(2215-2220)GACTCTfs	p.D739fs	KLHDC7A_uc009vpg.2_Frame_Shift_Del_p.D521fs	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	739_740						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		TCCTAGCAGACTCTGTCTCACC	0.658													12	261	---	---	---	---					
HNRNPR	10236	broad.mit.edu	37	1	23665029	23665030	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:23665029_23665030delAG	uc001bgr.3	-	3	388_389	c.229_230delCT	c.(229-231)CTGfs	p.L77fs	HNRNPR_uc001bgp.3_Frame_Shift_Del_p.L77fs|HNRNPR_uc009vqk.2_5'UTR|HNRNPR_uc001bgs.3_5'UTR|HNRNPR_uc010odw.1_Frame_Shift_Del_p.L77fs|HNRNPR_uc010odx.1_5'UTR|HNRNPR_uc009vql.2_5'UTR	NM_005826	NP_005817	O43390	HNRPR_HUMAN	heterogeneous nuclear ribonucleoprotein R	77	Asp/Glu-rich (acidic).					catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00394)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;6.83e-27)|Colorectal(126;6.01e-08)|COAD - Colon adenocarcinoma(152;3.32e-06)|GBM - Glioblastoma multiforme(114;6.69e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00357)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0875)|LUSC - Lung squamous cell carcinoma(448;0.19)		TAGTACAGACAGAGCTCCTTCT	0.351													11	241	---	---	---	---					
KIAA0319L	79932	broad.mit.edu	37	1	35972235	35972236	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:35972235_35972236delAG	uc001byx.2	-	3	901_902	c.643_644delCT	c.(643-645)CTGfs	p.L215fs	KIAA0319L_uc010ohw.1_RNA|KIAA0319L_uc001byz.2_Frame_Shift_Del_p.L215fs|KIAA0319L_uc010ohx.1_Frame_Shift_Del_p.L215fs	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	215	Extracellular (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				ACTGGTAGTCAGACCACCTAAT	0.421													62	261	---	---	---	---					
KIAA0467	23334	broad.mit.edu	37	1	43916008	43916009	+	Frame_Shift_Del	DEL	TC	-	-	rs139371901		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:43916008_43916009delTC	uc001cjk.1	+	57	7921_7922	c.7459_7460delTC	c.(7459-7461)TCTfs	p.S2487fs	KIAA0467_uc001cjl.1_Frame_Shift_Del_p.S475fs	NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	3386						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TTCCCCACAGTCTCTGACAGTG	0.634													8	478	---	---	---	---					
DNTTIP2	30836	broad.mit.edu	37	1	94342789	94342790	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:94342789_94342790delCA	uc001dqf.2	-	2	739_740	c.701_702delTG	c.(700-702)GTGfs	p.V234fs	DNTTIP2_uc010otm.1_RNA|DNTTIP2_uc009wdo.1_Frame_Shift_Del_p.V29fs	NM_014597	NP_055412	Q5QJE6	TDIF2_HUMAN	deoxynucleotidyltransferase, terminal,	234					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_lung(203;0.0111)|Lung NSC(277;0.0347)		all cancers(265;0.00679)|GBM - Glioblastoma multiforme(16;0.0278)|Epithelial(280;0.128)		CCTCTGAATTCACAGGTGTACC	0.361													61	287	---	---	---	---					
CLCC1	23155	broad.mit.edu	37	1	109479818	109479819	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:109479818_109479819delTC	uc001dwe.1	-	10	1355_1356	c.1263_1264delGA	c.(1261-1266)GAGATTfs	p.E421fs	AKNAD1_uc010ovb.1_Intron|CLCC1_uc001dwf.1_Frame_Shift_Del_p.E421fs|CLCC1_uc001dwg.1_Frame_Shift_Del_p.E371fs|CLCC1_uc009wes.1_Frame_Shift_Del_p.E300fs|CLCC1_uc009wet.1_Frame_Shift_Del_p.E236fs	NM_001048210	NP_001041675	Q96S66	CLCC1_HUMAN	Mid-1-related chloride channel 1 isoform 1	421_422						endoplasmic reticulum|Golgi apparatus|integral to membrane|nucleus				liver(1)	1		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.231)		TCTCTCAAAATCTCTCTTCTAC	0.515													18	148	---	---	---	---					
ABL2	27	broad.mit.edu	37	1	179095686	179095687	+	Frame_Shift_Del	DEL	GT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:179095686_179095687delGT	uc001gmj.3	-	4	799_800	c.512_513delAC	c.(511-513)CACfs	p.H171fs	ABL2_uc010pnf.1_Frame_Shift_Del_p.H171fs|ABL2_uc010png.1_Frame_Shift_Del_p.H150fs|ABL2_uc010pnh.1_Frame_Shift_Del_p.H150fs|ABL2_uc009wxe.2_Frame_Shift_Del_p.H150fs|ABL2_uc001gmg.3_Frame_Shift_Del_p.H156fs|ABL2_uc001gmi.3_Frame_Shift_Del_p.H156fs|ABL2_uc001gmh.3_Frame_Shift_Del_p.H135fs|ABL2_uc010pne.1_Frame_Shift_Del_p.H135fs|ABL2_uc009wxf.1_Frame_Shift_Del_p.H156fs|ABL2_uc001gmk.2_Frame_Shift_Del_p.H135fs	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	171					axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	GGTACCAGGAGTGTTTTTCCAG	0.530			T	ETV6	AML								81	169	---	---	---	---					
CNIH3	149111	broad.mit.edu	37	1	224804897	224804897	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:224804897delG	uc001hos.1	+	1	719	c.21delG	c.(19-21)GCGfs	p.A7fs		NM_152495	NP_689708	Q8TBE1	CNIH3_HUMAN	cornichon homolog 3	7	Cytoplasmic (Potential).				intracellular signal transduction|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic shaft|postsynaptic membrane					0	Breast(184;0.218)			GBM - Glioblastoma multiforme(131;0.073)		CTTTCGCTGCGTTCTGCTACA	0.597													379	745	---	---	---	---					
C1orf57	84284	broad.mit.edu	37	1	233105685	233105686	+	Frame_Shift_Del	DEL	GT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr1:233105685_233105686delGT	uc001hvj.1	+	4	412_413	c.325_326delGT	c.(325-327)GTGfs	p.V109fs	C1orf57_uc001hvi.2_Frame_Shift_Del_p.V109fs|C1orf57_uc009xft.1_Intron	NM_032324	NP_115700	Q9BSD7	NTPCR_HUMAN	nucleoside-triphosphatase C1orf57	109	ATP (Probable).						ATP binding|nucleoside-triphosphatase activity|nucleotide phosphatase activity|transferase activity				0		all_cancers(173;0.0818)|Prostate(94;0.137)				AGGGCAAAGAGTGTGCGTCATC	0.520													62	117	---	---	---	---					
TET1	80312	broad.mit.edu	37	10	70451223	70451224	+	Frame_Shift_Del	DEL	GT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:70451223_70451224delGT	uc001jok.3	+	12	6568_6569	c.6063_6064delGT	c.(6061-6066)GAGTGTfs	p.E2021fs		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	2021_2022					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						TTTTGATTGAGTGTGCCCGGCG	0.520													33	174	---	---	---	---					
AGAP11	119385	broad.mit.edu	37	10	88768817	88768819	+	In_Frame_Del	DEL	GAA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:88768817_88768819delGAA	uc001kee.2	+	12	2012_2014	c.808_810delGAA	c.(808-810)GAAdel	p.E273del	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	273	PH.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CACTGCTGAGGAAGAAGAAGAAA	0.493													24	96	---	---	---	---					
CALHM2	51063	broad.mit.edu	37	10	105209357	105209358	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:105209357_105209358delAG	uc001kwz.2	-	2	727_728	c.341_342delCT	c.(340-342)CCTfs	p.P114fs	CALHM2_uc001kxa.2_Frame_Shift_Del_p.P114fs|CALHM2_uc001kxc.2_Frame_Shift_Del_p.P114fs|CALHM2_uc001kxb.2_Frame_Shift_Del_p.P114fs|CALHM2_uc001kxd.1_Frame_Shift_Del_p.P114fs	NM_015916	NP_057000	Q9HA72	CAHM2_HUMAN	calcium homeostasis modulator 2	114	Helical; (Potential).					integral to membrane				skin(1)	1						ACCAGGTGACAGGGGCCACAGC	0.624													51	183	---	---	---	---					
MKI67	4288	broad.mit.edu	37	10	129902322	129902323	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr10:129902322_129902323delTG	uc001lke.2	-	13	7976_7977	c.7781_7782delCA	c.(7780-7782)ACAfs	p.T2594fs	MKI67_uc001lkf.2_Frame_Shift_Del_p.T2234fs|MKI67_uc009yav.1_Frame_Shift_Del_p.T2169fs|MKI67_uc009yaw.1_Frame_Shift_Del_p.T1744fs	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2594	14.|16 X 122 AA approximate repeats.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TGGCAGTGTCTGTTAGTTCTGG	0.485													42	120	---	---	---	---					
MUC5B	727897	broad.mit.edu	37	11	1254404	1254410	+	Frame_Shift_Del	DEL	GCGGGCG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:1254404_1254410delGCGGGCG	uc009ycr.1	+	34	4330_4336	c.4204_4210delGCGGGCG	c.(4204-4212)GCGGGCGCCfs	p.A1402fs	MUC5B_uc009yct.1_Frame_Shift_Del_p.A743fs|MUC5B_uc001ltb.2_Frame_Shift_Del_p.A746fs|MUC5B_uc001lta.2_Frame_Shift_Del_p.A411fs	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	743_745	TIL 2.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CCTCAATGACGCGGGCGCCTGTGTGCC	0.700													16	23	---	---	---	---					
MADD	8567	broad.mit.edu	37	11	47307065	47307066	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:47307065_47307066delCT	uc001ner.1	+	14	2666_2667	c.2475_2476delCT	c.(2473-2478)GACTCTfs	p.D825fs	MADD_uc001neq.2_Frame_Shift_Del_p.D825fs|MADD_uc001nev.1_Frame_Shift_Del_p.D782fs|MADD_uc001nes.1_Frame_Shift_Del_p.D782fs|MADD_uc001net.1_Frame_Shift_Del_p.D825fs|MADD_uc009yln.1_Frame_Shift_Del_p.D782fs|MADD_uc001neu.1_Frame_Shift_Del_p.D782fs|MADD_uc001nex.2_Frame_Shift_Del_p.D825fs|MADD_uc001nez.2_Frame_Shift_Del_p.D782fs|MADD_uc001new.2_Frame_Shift_Del_p.D825fs	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	825_826					activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		CAGAGTCAGACTCTCGGGCAAG	0.574													217	284	---	---	---	---					
TMEM132A	54972	broad.mit.edu	37	11	60698117	60698118	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:60698117_60698118delAG	uc001nqj.2	+	5	1195_1196	c.1002_1003delAG	c.(1000-1005)ACAGAGfs	p.T334fs	TMEM132A_uc001nqi.2_Frame_Shift_Del_p.T334fs|TMEM132A_uc001nqk.2_Frame_Shift_Del_p.T347fs|TMEM132A_uc001nql.1_Frame_Shift_Del_p.T347fs	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	334_335	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						CTGGGCTCACAGAGCCAGATTC	0.634													32	118	---	---	---	---					
DDB1	1642	broad.mit.edu	37	11	61076533	61076534	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:61076533_61076534delCA	uc001nrc.3	-	21	2808_2809	c.2582_2583delTG	c.(2581-2583)GTGfs	p.V861fs	DDB1_uc010rle.1_Frame_Shift_Del_p.V172fs|DDB1_uc010rlf.1_Frame_Shift_Del_p.V861fs	NM_001923	NP_001914	Q16531	DDB1_HUMAN	damage-specific DNA binding protein 1	861	Interaction with CDT1 and CUL4A.				cell cycle checkpoint|interspecies interaction between organisms|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|cytoplasm|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4						CCTTTTCAGCCACAGTCTGTAG	0.480								NER					30	188	---	---	---	---					
AHNAK	79026	broad.mit.edu	37	11	62288507	62288508	+	Frame_Shift_Del	DEL	AT	-	-	rs114666146		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:62288507_62288508delAT	uc001ntl.2	-	5	13681_13682	c.13381_13382delAT	c.(13381-13383)ATGfs	p.M4461fs	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4461					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				AAAGTCAGGCATAGAGATTTTG	0.450													12	379	---	---	---	---					
SF3B2	10992	broad.mit.edu	37	11	65822714	65822716	+	In_Frame_Del	DEL	AGA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:65822714_65822716delAGA	uc001ogy.1	+	4	466_468	c.426_428delAGA	c.(424-429)TCAGAG>TCG	p.E145del	SF3B2_uc001ogx.1_In_Frame_Del_p.E145del	NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	145	Potential.				interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						TGGCACTGTCAGAGGAGGAGCGG	0.650													18	90	---	---	---	---					
PPFIA1	8500	broad.mit.edu	37	11	70171677	70171678	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:70171677_70171678delAG	uc001opo.2	+	5	801_802	c.603_604delAG	c.(601-606)AAAGAGfs	p.K201fs	PPFIA1_uc001opn.1_Frame_Shift_Del_p.K201fs|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opq.1_5'Flank	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	201_202	Potential.				cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			CCACACACAAAGAGGTAAGCTT	0.342													37	236	---	---	---	---					
INPPL1	3636	broad.mit.edu	37	11	71939239	71939240	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:71939239_71939240delAG	uc001osf.2	+	2	335_336	c.188_189delAG	c.(187-189)CAGfs	p.Q63fs	INPPL1_uc001osg.2_5'UTR	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	63	SH2.				actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						ATCAGGTATCAGAAGCATGTGC	0.579													46	244	---	---	---	---					
OR2AT4	341152	broad.mit.edu	37	11	74800209	74800210	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:74800209_74800210delAG	uc010rro.1	-	1	549_550	c.549_550delCT	c.(547-552)TTCTGTfs	p.F183fs		NM_001005285	NP_001005285	A6NND4	O2AT4_HUMAN	olfactory receptor, family 2, subfamily AT,	183_184	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AGATGATCACAGAAGCAGTGGT	0.584													15	76	---	---	---	---					
BIRC2	329	broad.mit.edu	37	11	102221293	102221294	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:102221293_102221294insA	uc001pgy.2	+	2	2107_2108	c.708_709insA	c.(706-711)GCTATGfs	p.A236fs	BIRC2_uc010ruq.1_Frame_Shift_Ins_p.A187fs|BIRC2_uc010rur.1_Frame_Shift_Ins_p.A236fs	NM_001166	NP_001157	Q13490	BIRC2_HUMAN	baculoviral IAP repeat-containing protein 2	236_237	BIR 2.				cell surface receptor linked signaling pathway|cellular component disassembly involved in apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteasomal ubiquitin-dependent protein catabolic process|protein polyubiquitination	CD40 receptor complex|cytosol|internal side of plasma membrane	protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|Epithelial(9;0.11)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0144)		AGGATGATGCTATGTCAGAACA	0.441													54	213	---	---	---	---					
TTC12	54970	broad.mit.edu	37	11	113215119	113215120	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:113215119_113215120delGA	uc001pnu.2	+	13	1216_1217	c.1111_1112delGA	c.(1111-1113)GAGfs	p.E371fs	TTC12_uc001pnv.2_Frame_Shift_Del_p.E377fs|TTC12_uc001pnw.2_RNA|TTC12_uc001pnx.2_Frame_Shift_Del_p.E221fs	NM_017868	NP_060338	Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12	371							binding			pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		CGCCCAGACTGAGAGCGGACGG	0.589													54	303	---	---	---	---					
HYOU1	10525	broad.mit.edu	37	11	118919538	118919539	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr11:118919538_118919539delTC	uc001puu.2	-	18	2245_2246	c.2052_2053delGA	c.(2050-2055)GAGAAGfs	p.E684fs	HYOU1_uc001put.2_Frame_Shift_Del_p.E649fs|HYOU1_uc010ryu.1_Frame_Shift_Del_p.E642fs|HYOU1_uc010ryv.1_Frame_Shift_Del_p.E573fs|HYOU1_uc001pux.3_Frame_Shift_Del_p.E684fs|HYOU1_uc010ryw.1_RNA	NM_006389	NP_006380	Q9Y4L1	HYOU1_HUMAN	hypoxia up-regulated 1 precursor	684_685						endoplasmic reticulum lumen	ATP binding|protein binding				0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)|all_hematologic(192;0.207)		BRCA - Breast invasive adenocarcinoma(274;7.78e-05)		TTCTGCTTCTTCTCTCCCTCTG	0.609													29	96	---	---	---	---					
WNK1	65125	broad.mit.edu	37	12	1017101	1017102	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:1017101_1017102delCA	uc001qio.3	+	27	7239_7240	c.6732_6733delCA	c.(6730-6735)GGCACAfs	p.G2244fs	WNK1_uc001qip.3_Frame_Shift_Del_p.G1996fs|WNK1_uc001qir.3_Frame_Shift_Del_p.G1417fs|WNK1_uc009zdn.1_RNA	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	2244_2245					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			GCAGGAAGGGCACATTCACAGA	0.525													12	263	---	---	---	---					
DNAJC14	85406	broad.mit.edu	37	12	56221295	56221296	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:56221295_56221296delTC	uc001shx.1	-	2	1351_1352	c.1147_1148delGA	c.(1147-1149)GATfs	p.D383fs	DNAJC14_uc001shu.1_Frame_Shift_Del_p.D383fs|DNAJC14_uc009zob.1_Frame_Shift_Del_p.D383fs|DNAJC14_uc001shy.1_Frame_Shift_Del_p.D383fs	NM_032364	NP_115740	Q6Y2X3	DJC14_HUMAN	dopamine receptor interacting protein	383					protein folding|protein transport	endoplasmic reticulum membrane|integral to membrane	heat shock protein binding|unfolded protein binding			ovary(3)|large_intestine(1)	4						TGGCCTGCTATCTCTCAGCAGA	0.550													57	119	---	---	---	---					
CNOT2	4848	broad.mit.edu	37	12	70732570	70732572	+	In_Frame_Del	DEL	AAC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:70732570_70732572delAAC	uc001svv.2	+	11	1725_1727	c.1146_1148delAAC	c.(1144-1149)TTAACA>TTA	p.T384del	CNOT2_uc009zro.2_In_Frame_Del_p.T384del|CNOT2_uc009zrp.2_In_Frame_Del_p.T364del|CNOT2_uc009zrq.2_In_Frame_Del_p.T384del|CNOT2_uc001svw.1_In_Frame_Del_p.T124del	NM_014515	NP_055330	Q9NZN8	CNOT2_HUMAN	CCR4-NOT transcription complex, subunit 2	384					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	protein binding|RNA polymerase II transcription cofactor activity				0	Renal(347;0.236)		GBM - Glioblastoma multiforme(1;4.77e-09)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00243)|STAD - Stomach adenocarcinoma(21;0.0118)			GAAGTGACTTAACAACATTAGGC	0.340													24	656	---	---	---	---					
UTP20	27340	broad.mit.edu	37	12	101774928	101774929	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:101774928_101774929delTC	uc001tia.1	+	58	7751_7752	c.7595_7596delTC	c.(7594-7596)ATCfs	p.I2532fs		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	2532					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						ATGAAAAGTATCTCTCTCGCCT	0.356													8	137	---	---	---	---					
STX2	2054	broad.mit.edu	37	12	131291609	131291610	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr12:131291609_131291610delCA	uc001uio.2	-	6	547_548	c.380_381delTG	c.(379-381)GTGfs	p.V127fs	STX2_uc001uip.2_Frame_Shift_Del_p.V127fs|STX2_uc010tbj.1_Frame_Shift_Del_p.V127fs	NM_194356	NP_919337	P32856	STX2_HUMAN	syntaxin 2 isoform 2	127	Cytoplasmic (Potential).				acrosome reaction|ectoderm development|intracellular protein transport|organ morphogenesis|signal transduction	basolateral plasma membrane|integral to membrane|microsome|soluble fraction	calcium-dependent protein binding|SNAP receptor activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.79e-06)|all cancers(50;5.27e-05)|Epithelial(86;5.29e-05)		CCATGGCTTCCACAAACTTCCG	0.510													31	130	---	---	---	---					
CKAP2	26586	broad.mit.edu	37	13	53048124	53048125	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr13:53048124_53048125delAA	uc001vgv.2	+	8	1907_1908	c.1710_1711delAA	c.(1708-1713)ACAAAAfs	p.T570fs	CKAP2_uc001vgu.2_Frame_Shift_Del_p.T569fs|CKAP2_uc010tha.1_Frame_Shift_Del_p.T521fs	NM_001098525	NP_001091995	Q8WWK9	CKAP2_HUMAN	cytoskeleton associated protein 2 isoform 2	570_571					apoptosis|cell cycle	centrosome|microtubule|spindle pole				ovary(1)|skin(1)	2		Breast(56;0.000207)|Lung NSC(96;0.00212)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.6e-08)		ACAACAAAACAAAAGATCCAAC	0.347													15	56	---	---	---	---					
ADCY4	196883	broad.mit.edu	37	14	24803757	24803759	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:24803757_24803759delCAG	uc001wov.2	-	1	106_108	c.100_102delCTG	c.(100-102)CTGdel	p.L34del	ADCY4_uc001wow.2_In_Frame_Del_p.L34del|ADCY4_uc010toh.1_5'UTR|ADCY4_uc001wox.2_In_Frame_Del_p.L34del|ADCY4_uc001woy.2_In_Frame_Del_p.L34del|ADCY4_uc001woz.3_In_Frame_Del_p.L34del	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	34	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		GCACGATCCCCAGCAGCAGCAGC	0.700													5	11	---	---	---	---					
C14orf109	26175	broad.mit.edu	37	14	93652908	93652909	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:93652908_93652909delAG	uc010auo.2	+	2	760_761	c.402_403delAG	c.(400-405)ACAGTGfs	p.T134fs	MOAP1_uc001ybj.2_5'Flank|C14orf109_uc001ybk.3_Frame_Shift_Del_p.T96fs	NM_001098621	NP_001092091	Q8N6I4	CN109_HUMAN	hypothetical protein LOC26175 isoform 1	128_129						integral to membrane					0		all_cancers(154;0.11)|Acute lymphoblastic leukemia(33;0.0488)		Epithelial(152;0.176)|all cancers(159;0.197)|COAD - Colon adenocarcinoma(157;0.202)		ATCCCAAAACAGTGGGCTACTG	0.416													7	169	---	---	---	---					
CDCA4	55038	broad.mit.edu	37	14	105477801	105477802	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr14:105477801_105477802delCT	uc001yqa.2	-	2	561_562	c.465_466delAG	c.(463-468)AGAGGAfs	p.R155fs	CDCA4_uc001yqb.2_Frame_Shift_Del_p.R155fs	NM_145701	NP_663747	Q9BXL8	CDCA4_HUMAN	cell division cycle associated 4	155_156						nucleus				ovary(1)	1		all_cancers(154;0.0798)|Melanoma(154;0.155)|all_epithelial(191;0.183)	OV - Ovarian serous cystadenocarcinoma(23;0.00778)|all cancers(16;0.00936)|Epithelial(46;0.0227)	Epithelial(152;0.142)		TGAAAGCTTCCTCTGTTTTCTC	0.535													24	52	---	---	---	---					
CYFIP1	23191	broad.mit.edu	37	15	22954351	22954353	+	In_Frame_Del	DEL	AAG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:22954351_22954353delAAG	uc001yus.2	+	14	1605_1607	c.1501_1503delAAG	c.(1501-1503)AAGdel	p.K504del	CYFIP1_uc001yut.2_In_Frame_Del_p.K504del|CYFIP1_uc010aya.1_In_Frame_Del_p.K532del|CYFIP1_uc001yuu.2_5'Flank	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	504					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		GCAGGCCATCAAGAAGAAGAAGA	0.527													9	261	---	---	---	---					
ARHGAP11A	9824	broad.mit.edu	37	15	32929647	32929648	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:32929647_32929648delCT	uc001zgy.1	+	12	3395_3396	c.2673_2674delCT	c.(2671-2676)TCCTCTfs	p.S891fs	ARHGAP11A_uc010ubw.1_Frame_Shift_Del_p.S702fs|ARHGAP11A_uc010ubx.1_Frame_Shift_Del_p.S702fs	NM_014783	NP_055598	Q6P4F7	RHGBA_HUMAN	Rho GTPase activating protein 11A isoform 1	891_892					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			skin(3)|breast(2)|urinary_tract(1)	6		all_lung(180;1.3e-11)		all cancers(64;3.34e-21)|Epithelial(43;2.64e-15)|GBM - Glioblastoma multiforme(186;5.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.00112)|Lung(196;0.227)		CAAAAGATTCCTCTGTTTCATG	0.411													8	181	---	---	---	---					
MEF2A	4205	broad.mit.edu	37	15	100252710	100252715	+	In_Frame_Del	DEL	CAGCAG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr15:100252710_100252715delCAGCAG	uc010urw.1	+	11	1617_1622	c.1258_1263delCAGCAG	c.(1258-1263)CAGCAGdel	p.QQ428del	MEF2A_uc010urv.1_In_Frame_Del_p.QQ358del|MEF2A_uc010bos.2_In_Frame_Del_p.QQ418del|MEF2A_uc002bvf.2_In_Frame_Del_p.QQ420del|MEF2A_uc002bve.2_In_Frame_Del_p.QQ426del|MEF2A_uc002bvg.2_In_Frame_Del_p.QQ418del|MEF2A_uc002bvi.2_In_Frame_Del_p.QQ418del|MEF2A_uc010bot.2_In_Frame_Del_p.QQ350del	NM_005587	NP_005578	Q02078	MEF2A_HUMAN	myocyte enhancer factor 2A isoform 1	428_429	Gln/Pro-rich.				apoptosis|BMK cascade|cardiac conduction|cellular response to calcium ion|dendrite morphogenesis|innate immune response|mitochondrial genome maintenance|mitochondrion distribution|muscle organ development|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|ventricular cardiac myofibril development	nuclear chromatin|nucleoplasm	activating transcription factor binding|histone acetyltransferase binding|histone deacetylase binding|protein heterodimerization activity|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|SMAD binding			ovary(1)	1	Lung NSC(78;0.00335)|all_lung(78;0.00659)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00085)			ATCGGGCTTCcagcagcagcagcagc	0.495													5	7	---	---	---	---					
TMC5	79838	broad.mit.edu	37	16	19498593	19498594	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:19498593_19498594delCT	uc002dgc.3	+	17	3267_3268	c.2518_2519delCT	c.(2518-2520)CTCfs	p.L840fs	TMC5_uc010vaq.1_Frame_Shift_Del_p.L788fs|TMC5_uc002dgb.3_Frame_Shift_Del_p.L840fs|TMC5_uc010var.1_Frame_Shift_Del_p.L840fs|TMC5_uc002dgd.1_Frame_Shift_Del_p.L594fs|TMC5_uc002dge.3_Frame_Shift_Del_p.L594fs|TMC5_uc002dgf.3_Frame_Shift_Del_p.L523fs|TMC5_uc002dgg.3_Frame_Shift_Del_p.L481fs	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	840	Helical; (Potential).					integral to membrane				skin(1)	1						CATCTTCTTGCTCTTTTTCCCA	0.545													24	39	---	---	---	---					
FHOD1	29109	broad.mit.edu	37	16	67272181	67272182	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:67272181_67272182delCA	uc002esl.2	-	5	582_583	c.470_471delTG	c.(469-471)GTGfs	p.V157fs	FHOD1_uc010ced.2_5'UTR|FHOD1_uc010vjh.1_Intron	NM_013241	NP_037373	Q9Y613	FHOD1_HUMAN	formin homology 2 domain containing 1	157	GBD/FH3.				actin cytoskeleton organization	cytoplasm|cytoskeleton|nucleus	actin binding			breast(2)|ovary(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		CCTCTGAATGCACAAATTCAGG	0.599													35	65	---	---	---	---					
TMED6	146456	broad.mit.edu	37	16	69383480	69383481	+	Frame_Shift_Del	DEL	TA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:69383480_69383481delTA	uc002exc.1	-	2	320_321	c.287_288delTA	c.(286-288)ATAfs	p.I96fs		NM_144676	NP_653277	Q8WW62	TMED6_HUMAN	transmembrane emp24 protein transport domain	96	Lumenal (Potential).|GOLD.				transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1						GGGAGGTGTCTATGAGAAATCC	0.480													11	236	---	---	---	---					
AP1G1	164	broad.mit.edu	37	16	71807192	71807193	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr16:71807192_71807193delTC	uc010cgg.2	-	4	713_714	c.399_400delGA	c.(397-402)GAGATGfs	p.E133fs	AP1G1_uc002fba.2_Frame_Shift_Del_p.E133fs|AP1G1_uc002fbb.2_Frame_Shift_Del_p.E156fs|AP1G1_uc010vmg.1_RNA|AP1G1_uc010vmh.1_Frame_Shift_Del_p.E215fs	NM_001128	NP_001119	O43747	AP1G1_HUMAN	adaptor-related protein complex 1, gamma 1	133_134					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|recycling endosome	kinesin binding|protein transporter activity			ovary(2)	2		Ovarian(137;0.125)				TCTCTGCACATCTCTGAGGAGC	0.436													25	64	---	---	---	---					
BECN1	8678	broad.mit.edu	37	17	40963729	40963730	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:40963729_40963730delCA	uc002ibo.3	-	11	1262_1263	c.1127_1128delTG	c.(1126-1128)GTGfs	p.V376fs	BECN1_uc010whb.1_Frame_Shift_Del_p.V289fs|BECN1_uc010whc.1_Intron|BECN1_uc002ibn.2_Frame_Shift_Del_p.V376fs	NM_003766	NP_003757	Q14457	BECN1_HUMAN	beclin 1	376					anti-apoptosis|cell cycle|cellular defense response|cytokinesis|response to virus	membrane	protein binding			ovary(1)	1		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0745)		TGAACTGCTGCACACAGTCCAG	0.480													11	278	---	---	---	---					
AOC2	314	broad.mit.edu	37	17	41002164	41002165	+	Frame_Shift_Del	DEL	AG	-	-	rs62001928		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:41002164_41002165delAG	uc002ibu.2	+	4	2105_2106	c.2070_2071delAG	c.(2068-2073)ACAGTGfs	p.T690fs	AOC2_uc002ibt.2_Frame_Shift_Del_p.T663fs|AOC3_uc002ibv.2_5'Flank	NM_009590	NP_033720	O75106	AOC2_HUMAN	amine oxidase, copper containing 2 isoform b	690_691					catecholamine metabolic process|visual perception	cytoplasm|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|electron carrier activity|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			ovary(2)	2		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)		TCCCAAACACAGTGACTCTGGG	0.540													99	425	---	---	---	---					
EFTUD2	9343	broad.mit.edu	37	17	42928730	42928731	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:42928730_42928731delCT	uc002ihn.2	-	28	3091_3092	c.2830_2831delAG	c.(2830-2832)AGTfs	p.S944fs	EFTUD2_uc010wje.1_Frame_Shift_Del_p.S909fs|EFTUD2_uc010wjf.1_Frame_Shift_Del_p.S934fs	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	944						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				CACATCTTCACTGAGGCCCTGC	0.505													30	236	---	---	---	---					
BRIP1	83990	broad.mit.edu	37	17	59761289	59761290	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:59761289_59761290delTC	uc002izk.1	-	20	3258_3259	c.3117_3118delGA	c.(3115-3120)GAGAAGfs	p.E1039fs		NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	1039_1040	Interaction with BRCA1.				DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						CTTTCCATCTTCTCTGTTTTGA	0.416			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				78	339	---	---	---	---					
SRP68	6730	broad.mit.edu	37	17	74036529	74036530	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr17:74036529_74036530delTC	uc002jqk.1	-	15	1661_1662	c.1626_1627delGA	c.(1624-1629)GAGACCfs	p.E542fs	SRP68_uc010wsu.1_Frame_Shift_Del_p.E441fs|SRP68_uc002jql.1_Frame_Shift_Del_p.E504fs|SRP68_uc002jqj.1_Frame_Shift_Del_p.E203fs	NM_014230	NP_055045	Q9UHB9	SRP68_HUMAN	signal recognition particle 68kDa	542_543					response to drug	cytosol|endoplasmic reticulum|nucleolus|ribosome|signal recognition particle, endoplasmic reticulum targeting	RNA binding|signal recognition particle binding			ovary(1)	1						GAGGAGGAGGTCTCTGTTTGAT	0.416													27	164	---	---	---	---					
CACNA1A	773	broad.mit.edu	37	19	13363901	13363902	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:13363901_13363902delAG	uc010dze.2	-	30	5008_5009	c.4772_4773delCT	c.(4771-4773)TCTfs	p.S1591fs	CACNA1A_uc010xnd.1_Frame_Shift_Del_p.S296fs|CACNA1A_uc002mwx.3_Frame_Shift_Del_p.S296fs|CACNA1A_uc010dzc.2_Frame_Shift_Del_p.S1116fs|CACNA1A_uc002mwy.3_Frame_Shift_Del_p.S1590fs|CACNA1A_uc010xne.1_Frame_Shift_Del_p.S1119fs|CACNA1A_uc002mwv.3_Frame_Shift_Del_p.S107fs	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1591	Helical; Name=S1 of repeat IV; (Potential).|IV.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CATAAGCAACAGAAGCCCCATA	0.530													25	125	---	---	---	---					
EMR2	30817	broad.mit.edu	37	19	14866667	14866667	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:14866667delG	uc002mzp.1	-	13	1671	c.1215delC	c.(1213-1215)GTCfs	p.V405fs	EMR2_uc010dzs.1_Intron|EMR2_uc010xnw.1_Frame_Shift_Del_p.V405fs|EMR2_uc002mzo.1_Intron|EMR2_uc002mzq.1_Intron|EMR2_uc002mzr.1_Frame_Shift_Del_p.V356fs|EMR2_uc002mzs.1_Frame_Shift_Del_p.V263fs|EMR2_uc002mzt.1_Intron|EMR2_uc002mzu.1_Frame_Shift_Del_p.V312fs|EMR2_uc010xnx.1_Intron|EMR2_uc010xny.1_Intron	NM_013447	NP_038475	Q9UHX3	EMR2_HUMAN	egf-like module containing, mucin-like, hormone	405	Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			lung(2)|ovary(1)|skin(1)	4						CTGGAATGGAGACAAGGCCCA	0.587													25	37	---	---	---	---					
AKAP8L	26993	broad.mit.edu	37	19	15511842	15511843	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:15511842_15511843delTC	uc002naw.1	-	6	927_928	c.828_829delGA	c.(826-831)AAGAAGfs	p.K276fs	AKAP8L_uc002nax.1_RNA|AKAP8L_uc010xoh.1_Frame_Shift_Del_p.K215fs|AKAP8L_uc002nay.1_Frame_Shift_Del_p.K276fs|AKAP8L_uc002naz.2_Frame_Shift_Del_p.K124fs	NM_014371	NP_055186	Q9ULX6	AKP8L_HUMAN	A kinase (PRKA) anchor protein 8-like	276_277	Nuclear localization signal (Potential).					cytoplasm|nuclear matrix	DEAD/H-box RNA helicase binding|DNA binding|zinc ion binding			ovary(1)	1						TGCTTTCTCTTCTTCTTCTTGG	0.604													15	49	---	---	---	---					
AP1M1	8907	broad.mit.edu	37	19	16318863	16318864	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:16318863_16318864delGA	uc002ndu.2	+	4	474_475	c.301_302delGA	c.(301-303)GAGfs	p.E101fs	AP1M1_uc002ndv.2_Frame_Shift_Del_p.E101fs|AP1M1_uc010xpd.1_Frame_Shift_Del_p.E101fs	NM_032493	NP_115882	Q9BXS5	AP1M1_HUMAN	adaptor-related protein complex 1, mu 1 subunit	101					cellular membrane organization|endosome to melanosome transport|interspecies interaction between organisms|intracellular protein transport|melanosome organization|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(3)|breast(1)	4						GCTGGAGGAGGAGAGCATCCGG	0.559													14	570	---	---	---	---					
ACTN4	81	broad.mit.edu	37	19	39214582	39214583	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:39214582_39214583delAG	uc002oja.1	+	14	1616_1617	c.1557_1558delAG	c.(1555-1560)ACAGAGfs	p.T519fs	ACTN4_uc002ojb.1_5'Flank	NM_004924	NP_004915	O43707	ACTN4_HUMAN	actinin, alpha 4	519_520					platelet activation|platelet degranulation|positive regulation of cellular component movement|positive regulation of sodium:hydrogen antiporter activity|protein transport|regulation of apoptosis	extracellular region|nucleolus|perinuclear region of cytoplasm|platelet alpha granule lumen|protein complex|pseudopodium|ribonucleoprotein complex	actin filament binding|calcium ion binding|integrin binding|nucleoside binding|protein homodimerization activity				0	all_cancers(60;1.57e-05)|Ovarian(47;0.103)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			ACTAGAAAACAGAGAAGCAGCT	0.629													16	104	---	---	---	---					
ERF	2077	broad.mit.edu	37	19	42753149	42753151	+	In_Frame_Del	DEL	GAA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:42753149_42753151delGAA	uc002ote.3	-	4	1271_1273	c.1113_1115delTTC	c.(1111-1116)TCTTCC>TCC	p.371_372SS>S	ERF_uc002otd.3_In_Frame_Del_p.102_103SS>S	NM_006494	NP_006485	P50548	ERF_HUMAN	Ets2 repressor factor	371_372	Poly-Ser.				cell proliferation|regulation of transcription from RNA polymerase II promoter	nucleus	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			lung(1)|kidney(1)|central_nervous_system(1)|skin(1)	4		Prostate(69;0.00682)				GAATGGGGAGGAAGAAGAAGAAG	0.680													7	250	---	---	---	---					
CADM4	199731	broad.mit.edu	37	19	44130302	44130305	+	Frame_Shift_Del	DEL	TGCT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:44130302_44130305delTGCT	uc002oxc.1	-	5	684_687	c.635_638delAGCA	c.(634-639)AAGCAGfs	p.K212fs		NM_145296	NP_660339	Q8NFZ8	CADM4_HUMAN	cell adhesion molecule 4 precursor	212_213	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion	integral to membrane					0		Prostate(69;0.0199)				GTACTGCGTCTGCTTGCTGTGTCC	0.637													17	74	---	---	---	---					
ZNF224	7767	broad.mit.edu	37	19	44605024	44605025	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:44605024_44605025delAG	uc002oyh.1	+	4	388_389	c.86_87delAG	c.(85-87)CAGfs	p.Q29fs		NM_013398	NP_037530	Q9NZL3	ZN224_HUMAN	zinc finger protein 224	29	KRAB.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	DNA binding|protein binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				GACCTTGCTCAGAGGAAGCTGT	0.535													9	443	---	---	---	---					
ZNF227	7770	broad.mit.edu	37	19	44739863	44739864	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:44739863_44739864delAG	uc002oyu.2	+	6	1485_1486	c.1280_1281delAG	c.(1279-1281)CAGfs	p.Q427fs	ZNF227_uc010xwu.1_Frame_Shift_Del_p.Q376fs|ZNF227_uc002oyv.2_Frame_Shift_Del_p.Q427fs|ZNF227_uc010xwv.1_Frame_Shift_Del_p.Q376fs|ZNF227_uc010xww.1_Frame_Shift_Del_p.Q348fs|ZNF227_uc002oyw.2_Frame_Shift_Del_p.Q399fs|ZNF227_uc010ejh.2_Frame_Shift_Del_p.Q420fs|ZNF235_uc002oyx.1_Intron	NM_182490	NP_872296	Q86WZ6	ZN227_HUMAN	zinc finger protein 227	427	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(69;0.0435)				CACATCCATCAGAGAGTCCACA	0.495													37	143	---	---	---	---					
ZNF497	162968	broad.mit.edu	37	19	58868600	58868609	+	Frame_Shift_Del	DEL	GTACGGCTTC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr19:58868600_58868609delGTACGGCTTC	uc002qsh.1	-	3	582_591	c.393_402delGAAGCCGTAC	c.(391-402)GAGAAACCGTACfs	p.E131fs	A1BG_uc002qsf.1_Intron|ZNF497_uc002qsi.1_Frame_Shift_Del_p.E131fs|uc002qsj.1_5'UTR|uc002qsk.1_5'Flank	NM_198458	NP_940860	Q6ZNH5	ZN497_HUMAN	zinc finger protein 497	131_134	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(2)	2		all_cancers(17;3.11e-12)|all_epithelial(17;9.43e-09)|Colorectal(82;0.000256)|Lung NSC(17;0.000607)|all_lung(17;0.0024)|all_neural(62;0.0412)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0278)		CGGGGCACGTGTACGGCTTCTCGCCTGTGT	0.686													15	44	---	---	---	---					
ITSN2	50618	broad.mit.edu	37	2	24469741	24469742	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:24469741_24469742delTC	uc002rfe.2	-	28	3567_3568	c.3309_3310delGA	c.(3307-3312)CAGAAAfs	p.Q1103fs	ITSN2_uc002rff.2_Frame_Shift_Del_p.Q1076fs|ITSN2_uc002rfg.2_Frame_Shift_Del_p.Q1103fs|ITSN2_uc002rfh.1_RNA	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	1103_1104	SH3 4.				endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AACCATCCTTTCTGTCGCTTTT	0.347													17	84	---	---	---	---					
C2orf71	388939	broad.mit.edu	37	2	29295647	29295649	+	In_Frame_Del	DEL	TCC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:29295647_29295649delTCC	uc002rmt.1	-	1	1479_1481	c.1479_1481delGGA	c.(1477-1482)GAGGAA>GAA	p.493_494EE>E		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	493_494					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CATTTTGTCTTCCTCCTCCTCCT	0.542													8	424	---	---	---	---					
EIF2AK2	5610	broad.mit.edu	37	2	37334636	37334637	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:37334636_37334637delTC	uc010ynh.1	-	16	2070_2071	c.1513_1514delGA	c.(1513-1515)GATfs	p.D505fs	EIF2AK2_uc010fab.1_Frame_Shift_Del_p.D464fs|EIF2AK2_uc010yng.1_Frame_Shift_Del_p.D462fs|EIF2AK2_uc010fac.2_Frame_Shift_Del_p.D505fs	NM_002759	NP_002750	P19525	E2AK2_HUMAN	eukaryotic translation initiation factor 2-alpha	505	Protein kinase.				evasion by virus of host immune response|modulation by virus of host cellular process|negative regulation of osteoblast proliferation|protein autophosphorylation|response to virus|viral infectious cycle	cytosol	ATP binding|double-stranded RNA binding|eukaryotic translation initiation factor 2alpha kinase activity|protein binding|protein phosphatase type 2A regulator activity			ovary(2)|lung(2)|pancreas(1)	5		all_hematologic(82;0.248)				ATCAAATATATCTGAGATGATG	0.302													41	82	---	---	---	---					
SMYD5	10322	broad.mit.edu	37	2	73452993	73452994	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:73452993_73452994delAG	uc002siw.2	+	13	1205_1206	c.1176_1177delAG	c.(1174-1179)TCAGAAfs	p.S392fs	SMYD5_uc010yre.1_Frame_Shift_Del_p.S276fs|SMYD5_uc002six.1_RNA	NM_006062	NP_006053	Q6GMV2	SMYD5_HUMAN	SMYD family member 5	392_393	Glu-rich.						metal ion binding				0						ATGTGACCTCAgaagaggaaga	0.450													40	208	---	---	---	---					
MITD1	129531	broad.mit.edu	37	2	99790457	99790458	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:99790457_99790458delTC	uc002szs.1	-	2	221_222	c.173_174delGA	c.(172-174)AGAfs	p.R58fs	MRPL30_uc002szl.1_Intron|MRPL30_uc002szr.2_Intron	NM_138798	NP_620153	Q8WV92	MITD1_HUMAN	MIT, microtubule interacting and transport,	58	MIT.				protein transport	late endosome membrane				large_intestine(1)|ovary(1)	2						TGAGATTACATCTCTTAGTATT	0.272													7	47	---	---	---	---					
ITGB6	3694	broad.mit.edu	37	2	160994167	160994168	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:160994167_160994168delCA	uc002ubh.2	-	10	1453_1454	c.1437_1438delTG	c.(1435-1440)TGTGCCfs	p.C479fs	ITGB6_uc010fou.2_Frame_Shift_Del_p.C479fs|ITGB6_uc010zcq.1_Frame_Shift_Del_p.C437fs|ITGB6_uc010fov.1_Frame_Shift_Del_p.C479fs	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	479_480	Extracellular (Potential).|Cysteine-rich tandem repeats.|I.				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						GGGTGGCAGGCACACACCCCAC	0.584													13	95	---	---	---	---					
CASP8	841	broad.mit.edu	37	2	202137381	202137382	+	Frame_Shift_Del	DEL	AG	-	-	rs149933993	byFrequency	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:202137381_202137382delAG	uc002uxr.1	+	5	641_642	c.432_433delAG	c.(430-435)ATAGAGfs	p.I144fs	CASP8_uc010ftc.1_Frame_Shift_Del_p.I144fs|CASP8_uc002uxo.1_Frame_Shift_Del_p.I144fs|CASP8_uc002uxp.1_Frame_Shift_Del_p.I176fs|CASP8_uc002uxq.1_Frame_Shift_Del_p.I144fs|CASP8_uc002uxs.1_Frame_Shift_Del_p.I144fs|CASP8_uc002uxt.1_Frame_Shift_Del_p.I203fs|CASP8_uc002uxu.1_RNA|CASP8_uc010ftd.1_Frame_Shift_Del_p.I41fs|CASP8_uc002uxv.1_Frame_Shift_Del_p.I144fs|CASP8_uc002uxw.1_Frame_Shift_Del_p.I144fs|CASP8_uc002uxy.1_Frame_Shift_Del_p.I144fs|CASP8_uc002uxx.1_Frame_Shift_Del_p.I144fs|CASP8_uc010ftf.2_Frame_Shift_Del_p.I144fs|CASP8_uc010fte.1_Frame_Shift_Del_p.I41fs	NM_033355	NP_203519	Q14790	CASP8_HUMAN	caspase 8 isoform B precursor	144_145	DED 2.				activation of caspase activity|activation of pro-apoptotic gene products|cellular component disassembly involved in apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis involved in cellular protein catabolic process|response to tumor necrosis factor	centrosome|cytosol|mitochondrial outer membrane	cysteine-type endopeptidase activity|protein binding|protein binding			upper_aerodigestive_tract(2)|ovary(1)|breast(1)|skin(1)	5						ATATTTTCATAGAGATGGAGAA	0.396										HNSCC(4;0.00038)			37	224	---	---	---	---					
INO80D	54891	broad.mit.edu	37	2	206911290	206911291	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:206911290_206911291delCT	uc002vaz.3	-	5	1415_1416	c.1010_1011delAG	c.(1009-1011)GAGfs	p.E337fs		NM_017759	NP_060229	Q53TQ3	IN80D_HUMAN	INO80 complex subunit D	337					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						GCGAGGCCTGCTCTGAGTCCTC	0.411													9	226	---	---	---	---					
ZNF142	7701	broad.mit.edu	37	2	219507187	219507189	+	In_Frame_Del	DEL	TGC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:219507187_219507189delTGC	uc002vin.2	-	8	4486_4488	c.4050_4052delGCA	c.(4048-4053)CAGCAC>CAC	p.Q1350del	ZNF142_uc002vil.2_In_Frame_Del_p.Q1311del|ZNF142_uc010fvt.2_In_Frame_Del_p.Q1187del|ZNF142_uc002vim.2_In_Frame_Del_p.Q1187del	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	1350	C2H2-type 21.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		AAGCCGTGGGTGCTGTTTACGGG	0.650													30	77	---	---	---	---					
ACSL3	2181	broad.mit.edu	37	2	223782822	223782823	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:223782822_223782823delAG	uc002vni.2	+	6	1066_1067	c.615_616delAG	c.(613-618)ACAGAGfs	p.T205fs	ACSL3_uc002vnj.2_Frame_Shift_Del_p.T205fs	NM_004457	NP_004448	O95573	ACSL3_HUMAN	acyl-CoA synthetase long-chain family member 3	205_206	Cytoplasmic (Potential).				long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|fatty-acyl-CoA synthase activity|long-chain fatty acid-CoA ligase activity|protein binding			ovary(2)	2		Renal(207;0.0183)		Epithelial(121;1.28e-10)|all cancers(144;8.06e-08)|Lung(261;0.00834)|LUSC - Lung squamous cell carcinoma(224;0.00864)	Icosapent(DB00159)	TAAATGAAACAGAGGTGACCAA	0.351			T	ETV1	prostate								10	267	---	---	---	---					
DNER	92737	broad.mit.edu	37	2	230411682	230411683	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:230411682_230411683insA	uc002vpv.2	-	5	1120_1121	c.973_974insT	c.(973-975)TGCfs	p.C325fs	DNER_uc010zly.1_Frame_Shift_Ins_p.C53fs	NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	325	Extracellular (Potential).|EGF-like 3.				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		CTTCGTGGTGCATTTTCCTTTT	0.446													74	292	---	---	---	---					
SP100	6672	broad.mit.edu	37	2	231314322	231314323	+	Frame_Shift_Del	DEL	AG	-	-	rs140509980		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:231314322_231314323delAG	uc002vqt.2	+	7	774_775	c.633_634delAG	c.(631-636)ACAGAAfs	p.T211fs	SP100_uc002vqs.2_Frame_Shift_Del_p.T211fs|SP100_uc002vqu.1_Frame_Shift_Del_p.T211fs|SP100_uc010zmb.1_Frame_Shift_Del_p.T211fs|SP100_uc002vqq.1_Frame_Shift_Del_p.T211fs|SP100_uc002vqr.1_Frame_Shift_Del_p.T186fs|SP100_uc010zmc.1_Frame_Shift_Del_p.T186fs|SP100_uc002vqv.1_Frame_Shift_Del_p.T175fs	NM_003113	NP_003104	P23497	SP100_HUMAN	nuclear antigen Sp100 isoform 2	211_212					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			ovary(4)|central_nervous_system(1)	5		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		CCTGTGAAACAGAACAGATAAA	0.431													15	98	---	---	---	---					
NCL	4691	broad.mit.edu	37	2	232326309	232326310	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr2:232326309_232326310delCT	uc002vru.2	-	3	695_696	c.554_555delAG	c.(553-555)GAGfs	p.E185fs	SNORD82_uc010fxw.1_5'Flank	NM_005381	NP_005372	P19338	NUCL_HUMAN	nucleolin	185	Asp/Glu-rich (acidic).				angiogenesis	cell cortex|nucleolus|ribonucleoprotein complex	nucleotide binding|protein C-terminus binding|RNA binding|telomeric DNA binding			ovary(2)|pancreas(1)	3		Ovarian(221;1.34e-05)|Renal(207;0.0112)|Lung NSC(271;0.0339)|all_lung(227;0.0616)|all_hematologic(139;0.0748)|Hepatocellular(293;0.137)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.65e-111)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)|COAD - Colon adenocarcinoma(134;0.141)|STAD - Stomach adenocarcinoma(1183;0.18)		cgtcctcatcCTCTGAGGCAGG	0.228													7	50	---	---	---	---					
ZMYND8	23613	broad.mit.edu	37	20	45850083	45850084	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr20:45850083_45850084delTC	uc002xta.1	-	20	3492_3493	c.3238_3239delGA	c.(3238-3240)GAAfs	p.E1080fs	ZMYND8_uc010ghq.1_Frame_Shift_Del_p.E711fs|ZMYND8_uc010ghr.1_Frame_Shift_Del_p.E982fs|ZMYND8_uc002xst.1_Frame_Shift_Del_p.E962fs|ZMYND8_uc002xsu.1_Frame_Shift_Del_p.E953fs|ZMYND8_uc002xsv.1_Frame_Shift_Del_p.E1008fs|ZMYND8_uc002xsw.1_Frame_Shift_Del_p.E786fs|ZMYND8_uc002xsx.1_Frame_Shift_Del_p.E786fs|ZMYND8_uc002xsy.1_Frame_Shift_Del_p.E1009fs|ZMYND8_uc002xsz.1_Frame_Shift_Del_p.E971fs|ZMYND8_uc010zxy.1_Frame_Shift_Del_p.E1107fs|ZMYND8_uc002xtb.1_Frame_Shift_Del_p.E1054fs|ZMYND8_uc002xss.2_Frame_Shift_Del_p.E1080fs|ZMYND8_uc010zxz.1_Frame_Shift_Del_p.E948fs|ZMYND8_uc002xtc.1_Frame_Shift_Del_p.E1054fs|ZMYND8_uc002xtd.1_Frame_Shift_Del_p.E1029fs|ZMYND8_uc002xte.1_Frame_Shift_Del_p.E1034fs|ZMYND8_uc010zya.1_Frame_Shift_Del_p.E1080fs|ZMYND8_uc002xtf.1_Frame_Shift_Del_p.E1100fs|ZMYND8_uc002xsr.1_Frame_Shift_Del_p.E179fs	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	1080							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			ATTTAGTGTTTCTGTGTTCACC	0.515													16	59	---	---	---	---					
CLTCL1	8218	broad.mit.edu	37	22	19175500	19175502	+	In_Frame_Del	DEL	TCC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr22:19175500_19175502delTCC	uc002zpb.2	-	29	4500_4502	c.4425_4427delGGA	c.(4423-4428)GAGGAC>GAC	p.E1475del	CLTCL1_uc011agv.1_In_Frame_Del_p.E1475del|CLTCL1_uc011agw.1_In_Frame_Del_p.E1454del|CLTCL1_uc011agt.1_In_Frame_Del_p.E266del|CLTCL1_uc011agu.1_Intron	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	1475	Involved in binding clathrin light chain (By similarity).|Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					CACCTGATAGTCCTCCTCCTCTG	0.591			T	?	ALCL								22	526	---	---	---	---					
NR1D2	9975	broad.mit.edu	37	3	24003893	24003895	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:24003893_24003895delCAG	uc003ccs.2	+	5	1262_1264	c.943_945delCAG	c.(943-945)CAGdel	p.Q316del	NR1D2_uc010hfd.2_RNA|NR1D2_uc011awk.1_In_Frame_Del_p.Q241del	NM_005126	NP_005117	Q14995	NR1D2_HUMAN	nuclear receptor subfamily 1, group D, member 2	316					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			urinary_tract(1)|kidney(1)|skin(1)	3						TAGTGAGAGCCAGCAGCATCTCA	0.424													13	50	---	---	---	---					
TOP2B	7155	broad.mit.edu	37	3	25665051	25665052	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:25665051_25665052delCA	uc011awn.1	-	21	2724_2725	c.2681_2682delTG	c.(2680-2682)GTGfs	p.V894fs	TOP2B_uc003cdj.2_Frame_Shift_Del_p.V889fs	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	894					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TGACATTGTTCACAATTTCCCT	0.361													22	107	---	---	---	---					
SLC4A7	9497	broad.mit.edu	37	3	27427459	27427460	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:27427459_27427460delTC	uc003cdv.2	-	23	3459_3460	c.3388_3389delGA	c.(3388-3390)GAAfs	p.E1130fs	SLC4A7_uc011awu.1_RNA|SLC4A7_uc011awv.1_RNA|SLC4A7_uc003cdu.3_Frame_Shift_Del_p.E1011fs|SLC4A7_uc011aww.1_Frame_Shift_Del_p.E1139fs|SLC4A7_uc011awx.1_Frame_Shift_Del_p.E1126fs|SLC4A7_uc011awy.1_Frame_Shift_Del_p.E1122fs|SLC4A7_uc011awz.1_RNA|SLC4A7_uc011axa.1_Frame_Shift_Del_p.E1011fs|SLC4A7_uc011axb.1_Frame_Shift_Del_p.E1126fs|SLC4A7_uc010hfl.2_Frame_Shift_Del_p.E680fs|SLC4A7_uc003cdw.2_Frame_Shift_Del_p.E1006fs	NM_003615	NP_003606	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate	1130	Cytoplasmic (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|central_nervous_system(1)|skin(1)	5						CCAACTAAGTTCTCTCTTCGTG	0.252													9	213	---	---	---	---					
GOLGA4	2803	broad.mit.edu	37	3	37365876	37365877	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:37365876_37365877delAG	uc003cgv.2	+	14	2803_2804	c.2499_2500delAG	c.(2497-2502)ACAGAAfs	p.T833fs	GOLGA4_uc010hgr.1_Frame_Shift_Del_p.T394fs|GOLGA4_uc003cgw.2_Frame_Shift_Del_p.T855fs|GOLGA4_uc010hgs.2_Intron|GOLGA4_uc003cgx.2_Frame_Shift_Del_p.T714fs	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	833_834	Potential.|Glu-rich.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						ATTTGGAAACAGAAAGAATTCT	0.411													34	141	---	---	---	---					
ZNF197	10168	broad.mit.edu	37	3	44684240	44684241	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:44684240_44684241delTG	uc003cnm.2	+	6	1824_1825	c.1618_1619delTG	c.(1618-1620)TGTfs	p.C540fs	ZNF197_uc003cnn.2_Intron|ZNF197_uc003cno.2_Intron|ZNF197_uc003cnp.2_Intron	NM_006991	NP_008922	O14709	ZN197_HUMAN	zinc finger protein 197 isoform 1	540	C2H2-type 7.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|skin(1)	4				KIRC - Kidney renal clear cell carcinoma(197;0.0478)|Kidney(197;0.0598)		ACCCTATAAATGTGATGAATGT	0.406													80	186	---	---	---	---					
QRICH1	54870	broad.mit.edu	37	3	49094314	49094316	+	In_Frame_Del	DEL	TGC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:49094314_49094316delTGC	uc010hkq.2	-	4	1613_1615	c.1317_1319delGCA	c.(1315-1320)CAGCAA>CAA	p.439_440QQ>Q	QRICH1_uc003cvu.2_In_Frame_Del_p.439_440QQ>Q|QRICH1_uc003cvv.2_In_Frame_Del_p.439_440QQ>Q	NM_198880	NP_942581	Q2TAL8	QRIC1_HUMAN	glutamine-rich 1	439_440	Gln-rich.									ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.88e-05)|Kidney(197;0.00239)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		AACTTGGAgttgctgctgctgct	0.360													7	175	---	---	---	---					
C3orf54	389119	broad.mit.edu	37	3	49842362	49842363	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:49842362_49842363delCT	uc003cxq.1	+	2	939_940	c.806_807delCT	c.(805-807)GCTfs	p.A269fs		NM_203370	NP_976248	Q96EL1	CC054_HUMAN	hypothetical protein LOC389119	267											0				BRCA - Breast invasive adenocarcinoma(193;3.55e-06)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		CGCTTTGCAGCTCTCATGAGCT	0.589													27	727	---	---	---	---					
CYB561D2	11068	broad.mit.edu	37	3	50391061	50391062	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:50391061_50391062delCT	uc003dak.2	+	3	1131_1132	c.555_556delCT	c.(553-558)GCCTCTfs	p.A185fs	NPRL2_uc003dai.1_5'Flank|NPRL2_uc003daj.1_5'Flank|CYB561D2_uc003dal.2_Frame_Shift_Del_p.A185fs|CYB561D2_uc003dam.2_Frame_Shift_Del_p.A185fs	NM_007022	NP_008953	O14569	C56D2_HUMAN	cytochrome b-561 domain containing 2	185_186	Cytochrome b561.				electron transport chain|transport	integral to membrane	metal ion binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		GGTTCACTGCCTCTGTCACTGG	0.554													30	779	---	---	---	---					
ACY1	95	broad.mit.edu	37	3	52021209	52021210	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:52021209_52021210delAG	uc003dcp.2	+	10	765_766	c.704_705delAG	c.(703-705)CAGfs	p.Q235fs	ACY1_uc011bea.1_Frame_Shift_Del_p.Q325fs|ACY1_uc011beb.1_Frame_Shift_Del_p.Q235fs|ACY1_uc003dcq.2_Frame_Shift_Del_p.Q235fs	NM_000666	NP_000657	Q03154	ACY1_HUMAN	aminoacylase 1	235					cellular amino acid metabolic process|proteolysis	cytosol	aminoacylase activity|metal ion binding|metallopeptidase activity			breast(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000534)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	L-Aspartic Acid(DB00128)	AAGGAATGGCAGAGGTGAGGCA	0.550													63	369	---	---	---	---					
TMF1	7110	broad.mit.edu	37	3	69079119	69079120	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:69079119_69079120delTC	uc003dnn.2	-	11	2687_2688	c.2440_2441delGA	c.(2440-2442)GAAfs	p.E814fs	TMF1_uc011bfx.1_Frame_Shift_Del_p.E817fs	NM_007114	NP_009045	P82094	TMF1_HUMAN	TATA element modulatory factor 1	814	Potential.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi membrane|nucleus	DNA binding|protein binding|transcription cofactor activity				0		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;4.48e-05)|Epithelial(33;0.000274)|LUSC - Lung squamous cell carcinoma(21;0.0123)|KIRC - Kidney renal clear cell carcinoma(39;0.211)|Kidney(39;0.247)		AGCTGCACGTTCTCTCTCAACT	0.421													7	168	---	---	---	---					
C3orf38	285237	broad.mit.edu	37	3	88199298	88199299	+	Frame_Shift_Del	DEL	TG	-	-	rs6551278	byFrequency	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:88199298_88199299delTG	uc003dqw.2	+	2	407_408	c.96_97delTG	c.(94-99)ACCGTCfs	p.T32fs	CGGBP1_uc003dqu.2_5'Flank	NM_173824	NP_776185	Q5JPI3	CC038_HUMAN	hypothetical protein LOC285237	32_33					apoptosis						0		Lung NSC(201;0.17)		UCEC - Uterine corpus endometrioid carcinoma (27;0.194)|LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00661)		TATGCGACACTGTCACCAACCG	0.624													25	106	---	---	---	---					
QTRTD1	79691	broad.mit.edu	37	3	113798846	113798847	+	Frame_Shift_Del	DEL	AG	-	-	rs149531874	byFrequency	TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:113798846_113798847delAG	uc003eay.2	+	8	1070_1071	c.840_841delAG	c.(838-843)ACAGAGfs	p.T280fs	QTRTD1_uc003eaz.2_Frame_Shift_Del_p.T292fs|QTRTD1_uc011biq.1_Frame_Shift_Del_p.T157fs|QTRTD1_uc011bir.1_Frame_Shift_Del_p.T174fs	NM_024638	NP_078914	Q9H974	QTRD1_HUMAN	queuine tRNA-ribosyltransferase domain	280_281					queuosine biosynthetic process	mitochondrion	metal ion binding|queuine tRNA-ribosyltransferase activity			central_nervous_system(1)|skin(1)	2						ATCAAGTAACAGAGCGGGGATG	0.421													11	213	---	---	---	---					
PIGZ	80235	broad.mit.edu	37	3	196674137	196674138	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr3:196674137_196674138delAA	uc003fxh.2	-	3	1777_1778	c.1630_1631delTT	c.(1630-1632)TTAfs	p.L544fs		NM_025163	NP_079439	Q86VD9	PIGZ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	544					GPI anchor biosynthetic process	integral to membrane|intrinsic to endoplasmic reticulum membrane	alpha-1,2-mannosyltransferase activity			ovary(3)	3	all_cancers(143;1.05e-08)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.29e-24)|all cancers(36;2.79e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.03e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00603)		ATGGGGAAATAAAAGTGTTTCA	0.589													34	109	---	---	---	---					
INTU	27152	broad.mit.edu	37	4	128590269	128590270	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr4:128590269_128590270delTG	uc003ifk.1	+	5	1121_1122	c.1051_1052delTG	c.(1051-1053)TGTfs	p.C351fs	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	351										ovary(1)	1						TCTCACACTCTGTGACATGCTG	0.327													18	71	---	---	---	---					
DNAJC21	134218	broad.mit.edu	37	5	34937626	34937627	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:34937626_34937627delAA	uc003jjc.2	+	5	861_862	c.634_635delAA	c.(634-636)AAAfs	p.K212fs	DNAJC21_uc003jjb.2_Frame_Shift_Del_p.K212fs|DNAJC21_uc010iuu.1_Frame_Shift_Del_p.K96fs	NM_001012339	NP_001012339	Q5F1R6	DJC21_HUMAN	DnaJ homology subfamily A member 5 isoform 2	212					protein folding	ribosome	heat shock protein binding|nucleic acid binding|unfolded protein binding|zinc ion binding			breast(1)|skin(1)	2	all_lung(31;7.08e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)			TTTCATTCGTAAAAGAGATAAA	0.455													11	154	---	---	---	---					
MAP3K1	4214	broad.mit.edu	37	5	56177863	56177864	+	Frame_Shift_Del	DEL	AC	-	-	rs71882650		TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:56177863_56177864delAC	uc003jqw.3	+	14	3337_3338	c.2836_2837delAC	c.(2836-2838)ACAfs	p.T946fs		NM_005921	NP_005912	Q13233	M3K1_HUMAN	mitogen-activated protein kinase kinase kinase	946	Poly-Thr.				cellular response to mechanical stimulus|innate immune response|MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|zinc ion binding			ovary(1)|skin(1)	2		Lung NSC(810;4.65e-05)|Prostate(74;0.0132)|Breast(144;0.0321)|Ovarian(174;0.223)		OV - Ovarian serous cystadenocarcinoma(10;6.08e-40)		aacaacaacaacaacaacaaca	0.371													9	68	---	---	---	---					
TNPO1	3842	broad.mit.edu	37	5	72192962	72192964	+	In_Frame_Del	DEL	GTT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:72192962_72192964delGTT	uc003kck.3	+	20	2469_2471	c.2322_2324delGTT	c.(2320-2325)ACGTTG>ACG	p.L776del	TNPO1_uc011csj.1_In_Frame_Del_p.L726del|TNPO1_uc003kch.2_In_Frame_Del_p.L768del|TNPO1_uc003kci.3_In_Frame_Del_p.L768del|TNPO1_uc003kcg.3_In_Frame_Del_p.L768del	NM_002270	NP_002261	Q92973	TNPO1_HUMAN	transportin 1 isoform 1	776					interspecies interaction between organisms|mRNA metabolic process|protein import into nucleus, translocation	cytosol|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			skin(3)|urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)	7		Lung NSC(167;0.0053)|Ovarian(174;0.0175)		OV - Ovarian serous cystadenocarcinoma(47;6.14e-54)		CACCAAAGACGTTGTTAGAGAAT	0.369													30	95	---	---	---	---					
TGFBI	7045	broad.mit.edu	37	5	135382971	135382972	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:135382971_135382972delTG	uc003lbf.3	+	6	794_795	c.633_634delTG	c.(631-636)ACTGTGfs	p.T211fs	TGFBI_uc003lbg.3_5'UTR|TGFBI_uc003lbh.3_Frame_Shift_Del_p.T37fs|TGFBI_uc011cyb.1_Frame_Shift_Del_p.T37fs|TGFBI_uc010jed.2_5'Flank	NM_000358	NP_000349	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	211_212	FAS1 1.				angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(3)|ovary(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AGATTGTAACTGTGAACTGTGC	0.525													13	43	---	---	---	---					
KDM3B	51780	broad.mit.edu	37	5	137715279	137715280	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:137715279_137715280delAC	uc003lcy.1	+	5	787_788	c.587_588delAC	c.(586-588)TACfs	p.Y196fs	KDM3B_uc010jew.1_5'UTR	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	196					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						TTAGGTCCCTACAGTGTTCAAG	0.406													18	64	---	---	---	---					
NR3C1	2908	broad.mit.edu	37	5	142780124	142780125	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:142780124_142780125delTC	uc003lmz.2	-	2	772_773	c.280_281delGA	c.(280-282)GAAfs	p.E94fs	NR3C1_uc003lmy.2_Frame_Shift_Del_p.E94fs|NR3C1_uc003lna.2_Frame_Shift_Del_p.E94fs|NR3C1_uc003lnb.2_Frame_Shift_Del_p.E94fs|NR3C1_uc011dbk.1_Intron|NR3C1_uc003lnc.2_Frame_Shift_Del_p.E94fs|NR3C1_uc003lnd.2_Frame_Shift_Del_p.E94fs|NR3C1_uc003lne.2_Frame_Shift_Del_p.E94fs|NR3C1_uc003lnf.2_Frame_Shift_Del_p.E94fs|NR3C1_uc003lng.2_Frame_Shift_Del_p.E94fs|NR3C1_uc003lnh.2_Frame_Shift_Del_p.E94fs|NR3C1_uc003lni.2_Frame_Shift_Del_p.E94fs	NM_000176	NP_000167	P04150	GCR_HUMAN	glucocorticoid receptor isoform alpha	94	Modulating.				chromatin modification|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus|transcription from RNA polymerase II promoter	mitochondrial matrix|nucleoplasm	glucocorticoid receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(2;3.2e-05)|all_hematologic(2;0.000361)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)		Amcinonide(DB00288)|Betamethasone(DB00443)|Budesonide(DB01222)|Dexamethasone(DB01234)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluticasone Propionate(DB00588)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mifepristone(DB00834)|Mometasone(DB00764)|Prednisone(DB00635)	CACTTTTGTTTCTGTCTCTCCC	0.460													10	198	---	---	---	---					
GPR151	134391	broad.mit.edu	37	5	145895587	145895588	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr5:145895587_145895588delAG	uc003lod.1	-	1	89_90	c.89_90delCT	c.(88-90)TCTfs	p.S30fs		NM_194251	NP_919227	Q8TDV0	GP151_HUMAN	G protein-coupled receptor 151	30	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCTGGGAATCAGAGGGCAGGTA	0.559													15	218	---	---	---	---					
NEDD9	4739	broad.mit.edu	37	6	11185769	11185771	+	In_Frame_Del	DEL	AGA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:11185769_11185771delAGA	uc003mzv.2	-	7	2296_2298	c.2129_2131delTCT	c.(2128-2133)TTCTAC>TAC	p.F710del	NEDD9_uc010joz.2_In_Frame_Del_p.F710del|NEDD9_uc003mzw.3_In_Frame_Del_p.F564del	NM_006403	NP_006394	Q14511	CASL_HUMAN	neural precursor cell expressed, developmentally	710	Divergent helix-loop-helix motif.				actin filament bundle assembly|cell adhesion|cell division|integrin-mediated signaling pathway|mitosis|regulation of growth	cell cortex|focal adhesion|Golgi apparatus|lamellipodium|nucleus	protein binding				0	Breast(50;0.0768)|Ovarian(93;0.152)	all_hematologic(90;0.135)	Epithelial(50;0.0647)|all cancers(50;0.179)			TGGTCATAGTAGAAGCACAGCAA	0.542													116	790	---	---	---	---					
TRIM27	5987	broad.mit.edu	37	6	28889744	28889744	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:28889744delG	uc003nlr.2	-	2	800	c.441delC	c.(439-441)CTCfs	p.L147fs	TRIM27_uc003nls.2_Frame_Shift_Del_p.L147fs|TRIM27_uc003nlt.1_Frame_Shift_Del_p.L147fs	NM_006510	NP_006501	P14373	TRI27_HUMAN	ret finger protein	147	Potential.				cell proliferation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|protein trimerization|spermatogenesis|transcription, DNA-dependent	cytoplasm|integral to plasma membrane|membrane fraction|nuclear membrane|PML body	DNA binding|protein binding|transmembrane receptor protein tyrosine kinase activity|zinc ion binding			ovary(1)	1						TTAAATGGTCGAGCTGGTTCT	0.448			T	RET	papillary thyroid								79	109	---	---	---	---					
MOG	4340	broad.mit.edu	37	6	29634038	29634039	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:29634038_29634039delGA	uc003nnf.2	+	3	724_725	c.546_547delGA	c.(544-549)CTGAGAfs	p.L182fs	MOG_uc003nmy.1_Frame_Shift_Del_p.L182fs|MOG_uc003nmz.2_3'UTR|MOG_uc011dlt.1_Frame_Shift_Del_p.L112fs|MOG_uc003nna.2_Frame_Shift_Del_p.L66fs|MOG_uc011dlu.1_Frame_Shift_Del_p.L66fs|MOG_uc011dlv.1_Frame_Shift_Del_p.L66fs|MOG_uc003nnd.2_3'UTR|MOG_uc003nne.2_Frame_Shift_Del_p.L182fs|MOG_uc003nng.2_Frame_Shift_Del_p.L182fs|MOG_uc003nnh.2_Frame_Shift_Del_p.L182fs|MOG_uc003nni.2_Frame_Shift_Del_p.L182fs|MOG_uc003nnj.2_Frame_Shift_Del_p.L182fs|MOG_uc003nnk.2_Frame_Shift_Del_p.L182fs	NM_206809	NP_996532	Q16653	MOG_HUMAN	myelin oligodendrocyte glycoprotein isoform	182_183	Cytoplasmic (Potential).				cell adhesion|central nervous system development|positive regulation of MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)	1						AGTACAGACTGAGAGGTACAGG	0.520													40	255	---	---	---	---					
RXRB	6257	broad.mit.edu	37	6	33162541	33162542	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:33162541_33162542delAG	uc003odb.2	-	10	1698_1699	c.1519_1520delCT	c.(1519-1521)CTGfs	p.L507fs	RXRB_uc003odc.2_Frame_Shift_Del_p.L511fs|RXRB_uc003odd.2_Frame_Shift_Del_p.L411fs|RXRB_uc011dqr.1_Frame_Shift_Del_p.L321fs	NM_021976	NP_068811	P28702	RXRB_HUMAN	retinoid X receptor, beta	507	Ligand-binding (By similarity).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	ligand-regulated transcription factor activity|retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			ovary(3)	3					Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Bexarotene(DB00307)|Etretinate(DB00926)|Tazarotene(DB00799)|Tretinoin(DB00755)	GAAGAAAAACAGATGCTCTAGA	0.564													32	138	---	---	---	---					
LYRM2	57226	broad.mit.edu	37	6	90347572	90347574	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:90347572_90347574delGAG	uc003pnm.2	-	2	112_114	c.73_75delCTC	c.(73-75)CTCdel	p.L25del	LYRM2_uc010kce.1_RNA|LYRM2_uc003png.2_RNA|LYRM2_uc010kcf.1_RNA|LYRM2_uc010kcg.2_RNA|LYRM2_uc003pnl.3_RNA	NM_020466	NP_065199	Q9NU23	LYRM2_HUMAN	LYR motif containing 2	25											0		all_cancers(76;2.76e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.45e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;3.72e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0131)		TCCTTCTGTAGAGGAGAAGAACT	0.404													12	277	---	---	---	---					
AKAP12	9590	broad.mit.edu	37	6	151673453	151673454	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr6:151673453_151673454delAG	uc011eep.1	+	4	4167_4168	c.3927_3928delAG	c.(3925-3930)ACAGAAfs	p.T1309fs	AKAP12_uc003qoe.2_Frame_Shift_Del_p.T1309fs|AKAP12_uc003qof.2_Frame_Shift_Del_p.T1211fs|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Frame_Shift_Del_p.T1204fs	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	1309_1310					G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		GTGAAGGGACAGAAGAAGCTGA	0.470													27	110	---	---	---	---					
CUX1	1523	broad.mit.edu	37	7	101845205	101845206	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:101845205_101845206delAG	uc003uyx.3	+	18	2666_2667	c.2628_2629delAG	c.(2626-2631)TCAGAGfs	p.S876fs	CUX1_uc003uys.3_Frame_Shift_Del_p.S887fs|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	876_877					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						CCTCGTCGTCAGAGTACTGGAA	0.673													12	181	---	---	---	---					
MLL5	55904	broad.mit.edu	37	7	104752698	104752699	+	Frame_Shift_Del	DEL	TT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr7:104752698_104752699delTT	uc003vcm.2	+	27	5029_5030	c.4495_4496delTT	c.(4495-4497)TTTfs	p.F1499fs	MLL5_uc010ljc.2_Frame_Shift_Del_p.F1499fs|MLL5_uc010ljf.1_Intron|MLL5_uc010ljg.2_Frame_Shift_Del_p.F233fs	NM_182931	NP_891847	Q8IZD2	MLL5_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 5	1499	Pro-rich.				cell cycle arrest|cellular response to retinoic acid|DNA methylation|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent	MLL5-L complex|nuclear speck	enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding			ovary(2)|pancreas(1)	3						TCAAAGAAACTTTTATCCAGCA	0.470													20	35	---	---	---	---					
ZNF395	55893	broad.mit.edu	37	8	28209270	28209271	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:28209270_28209271delCT	uc003xgq.2	-	7	1062_1063	c.974_975delAG	c.(973-975)GAGfs	p.E325fs	ZNF395_uc003xgt.2_Frame_Shift_Del_p.E325fs|ZNF395_uc003xgr.2_Frame_Shift_Del_p.E325fs|ZNF395_uc003xgs.2_Frame_Shift_Del_p.E325fs	NM_018660	NP_061130	Q9H8N7	ZN395_HUMAN	zinc finger protein 395	325					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding				0		Ovarian(32;2.06e-05)		KIRC - Kidney renal clear cell carcinoma(542;0.102)|Kidney(114;0.123)|Colorectal(74;0.142)		TCAGCTGCACCTCTGTGTAGTA	0.520													12	441	---	---	---	---					
SHARPIN	81858	broad.mit.edu	37	8	145154268	145154269	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:145154268_145154269delCA	uc003zba.2	-	6	1317_1318	c.833_834delTG	c.(832-834)GTGfs	p.V278fs	SHARPIN_uc003zbb.2_RNA	NM_030974	NP_112236	Q9H0F6	SHRPN_HUMAN	shank-interacting protein-like 1	278	Ubiquitin-like.|Interaction with SHANK1 (By similarity).				negative regulation of inflammatory response|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein linear polyubiquitination|regulation of CD40 signaling pathway|regulation of tumor necrosis factor-mediated signaling pathway	cytosol|LUBAC complex	polyubiquitin binding|zinc ion binding			ovary(1)	1	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.1e-42)|Epithelial(56;1.58e-40)|all cancers(56;6.12e-36)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TGCGCTCAGGCACACACAGGCA	0.619													25	131	---	---	---	---					
FBXL6	26233	broad.mit.edu	37	8	145579332	145579333	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr8:145579332_145579333delCA	uc003zcb.2	-	9	1503_1504	c.1478_1479delTG	c.(1477-1479)GTGfs	p.V493fs	C8ORFK29_uc011llb.1_5'Flank|C8ORFK29_uc010mfw.2_5'Flank|C8ORFK29_uc003zby.3_5'Flank|FBXL6_uc003zbz.2_Frame_Shift_Del_p.V220fs|FBXL6_uc003zca.2_Frame_Shift_Del_p.V487fs|FBXL6_uc010mfx.2_Frame_Shift_Del_p.V254fs|GPR172A_uc003zcc.1_5'Flank|GPR172A_uc003zcd.1_5'Flank|GPR172A_uc003zce.1_5'Flank|GPR172A_uc010mfy.1_5'Flank|GPR172A_uc003zcf.1_5'Flank|GPR172A_uc011llc.1_5'Flank	NM_012162	NP_036294	Q8N531	FBXL6_HUMAN	F-box and leucine-rich repeat protein 6 isoform	493	LRR 11.				proteolysis		ubiquitin-protein ligase activity			ovary(1)|lung(1)	2	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			AGCTGCTGATCACAGAGCTGTG	0.653													12	43	---	---	---	---					
NFX1	4799	broad.mit.edu	37	9	33366735	33366736	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:33366735_33366736delAG	uc003zsq.2	+	22	3209_3210	c.3148_3149delAG	c.(3148-3150)AGTfs	p.S1050fs	SUGT1P1_uc010mjq.1_Intron|NFX1_uc003zsr.2_Frame_Shift_Del_p.S1051fs	NM_002504	NP_002495	Q12986	NFX1_HUMAN	nuclear transcription factor, X-box binding 1	1050	R3H.				inflammatory response|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|ligase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.00506)	GBM - Glioblastoma multiforme(74;0.224)		GAGCTATGACAGTGAACCGAAG	0.520													23	49	---	---	---	---					
ACTL7B	10880	broad.mit.edu	37	9	111617184	111617185	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:111617184_111617185delCA	uc004bdi.2	-	1	1091_1092	c.1026_1027delTG	c.(1024-1029)TGTGGCfs	p.C342fs		NM_006686	NP_006677	Q9Y614	ACL7B_HUMAN	actin-like 7B	342_343						actin cytoskeleton|cytoplasm	structural constituent of cytoskeleton			pancreas(1)	1						GTGCAGCCGCCACACAGTAGCA	0.693													39	79	---	---	---	---					
PPP6C	5537	broad.mit.edu	37	9	127933387	127933388	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:127933387_127933388delCT	uc004bpg.3	-	2	368_369	c.147_148delAG	c.(145-150)ACAGTGfs	p.T49fs	PPP6C_uc010mwv.2_Frame_Shift_Del_p.T86fs|PPP6C_uc010mww.2_Frame_Shift_Del_p.T49fs|PPP6C_uc011lzr.1_5'UTR	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	49_50					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						TCTCCACACACTGTTACTGGTG	0.371													9	282	---	---	---	---					
REXO4	57109	broad.mit.edu	37	9	136272149	136272151	+	In_Frame_Del	DEL	CTT	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:136272149_136272151delCTT	uc004cdm.2	-	8	1395_1397	c.1195_1197delAAG	c.(1195-1197)AAGdel	p.K399del	REXO4_uc011mde.1_In_Frame_Del_p.K262del|REXO4_uc011mdf.1_In_Frame_Del_p.K262del|REXO4_uc004cdn.2_In_Frame_Del_p.K150del|REXO4_uc004cdo.2_In_Frame_Del_p.K227del	NM_020385	NP_065118	Q9GZR2	REXO4_HUMAN	XPMC2 prevents mitotic catastrophe 2 homolog	399						nucleolus	exonuclease activity|nucleic acid binding|sequence-specific DNA binding transcription factor activity				0				OV - Ovarian serous cystadenocarcinoma(145;8.58e-08)|Epithelial(140;9.55e-07)|all cancers(34;1.05e-05)		TCTCCCACTCCTTCTTCACCATG	0.621											OREG0019587	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	59	102	---	---	---	---					
NACC2	138151	broad.mit.edu	37	9	138903681	138903681	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chr9:138903681delT	uc004cgw.2	-	6	1601	c.1445delA	c.(1444-1446)GAGfs	p.E482fs	NACC2_uc010nbh.2_Frame_Shift_Del_p.E121fs|uc004cgv.3_5'Flank	NM_144653	NP_653254	Q96BF6	NACC2_HUMAN	BTB (POZ) domain containing 14A	482					negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|protein homooligomerization	nuclear body					0						AGGCGGGAACTCGGGGTCGAG	0.687													9	0	---	---	---	---					
MIR1264	100302251	broad.mit.edu	37	X	113887157	113887160	+	RNA	DEL	AATA	-	-			TCGA-EE-A3JI-06A-11D-A21A-08	TCGA-EE-A3JI-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0dd0718d-5ddf-4c59-8c47-0f51303daeb5	0edf2345-54a0-4961-a497-b6f9837519aa	g.chrX:113887157_113887160delAATA	hsa-mir-1264|MI0003758	+			c.28_31delAATA			HTR2C_uc004epu.1_Intron|HTR2C_uc010nqc.1_Intron|HTR2C_uc004epv.1_Intron																	0						ttgttgaaagaataaatAAACCAA	0.240													13	22	---	---	---	---					
