Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PUSL1	126789	broad.mit.edu	37	1	1246312	1246312	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:1246312G>A	uc001aed.2	+	7	753	c.723G>A	c.(721-723)CTG>CTA	p.L241L	ACAP3_uc001aec.1_5'Flank|PUSL1_uc010nyi.1_Silent_p.L80L|PUSL1_uc009vjx.2_Missense_Mutation_p.G116S	NM_153339	NP_699170	Q8N0Z8	PUSL1_HUMAN	pseudouridylate synthase-like 1	241					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			skin(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;4.95e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CGGCTGTGCTGGTGGCCGTGG	0.657													5	111					0	0	3.59834e-05	0	0
CCNL2	81669	broad.mit.edu	37	1	1323407	1323407	+	Missense_Mutation	SNP	G	C	C	rs142455256		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:1323407G>C	uc001afi.2	-	9	1077	c.1045C>G	c.(1045-1047)CCA>GCA	p.P349A	CCNL2_uc010nym.1_RNA|CCNL2_uc001aff.1_Missense_Mutation_p.P127A|CCNL2_uc001afg.1_Missense_Mutation_p.P127A|CCNL2_uc001afh.2_3'UTR|CCNL2_uc001afj.2_3'UTR|CCNL2_uc001afk.2_3'UTR	NM_030937	NP_112199	Q96S94	CCNL2_HUMAN	cyclin L2 isoform A	349					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nuclear speck	protein kinase binding			ovary(2)|central_nervous_system(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.03e-36)|OV - Ovarian serous cystadenocarcinoma(86;4.17e-22)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.0023)|BRCA - Breast invasive adenocarcinoma(365;0.00465)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.146)		ACAGACAGTGGGGAAGGCTTG	0.542													5	143					0	0	0.000274275	0	0
SSU72	29101	broad.mit.edu	37	1	1500230	1500230	+	Silent	SNP	G	C	C	rs150412235		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:1500230G>C	uc001agd.2	-	2	472	c.147C>G	c.(145-147)CCC>CCG	p.P49P	SSU72_uc009vkg.1_Silent_p.P49P|SSU72_uc001age.1_Silent_p.P49P	NM_014188	NP_054907	Q9NP77	SSU72_HUMAN	Ssu72 RNA polymerase II CTD phosphatase homolog	49					mRNA processing	cytoplasm|nucleus	phosphoprotein phosphatase activity				0	all_cancers(77;0.00125)|all_epithelial(69;0.000703)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;5.03e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;5.04e-37)|OV - Ovarian serous cystadenocarcinoma(86;3.72e-23)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;0.000188)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|STAD - Stomach adenocarcinoma(132;0.00645)|BRCA - Breast invasive adenocarcinoma(365;0.00837)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		TGGGCTTGTCGGGAGCTGGTC	0.458													4	111					0	0	0.00024832	0	0
PANK4	55229	broad.mit.edu	37	1	2450706	2450706	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:2450706C>G	uc001ajm.1	-	7	920	c.911G>C	c.(910-912)GGG>GCG	p.G304A	PANK4_uc010nza.1_Missense_Mutation_p.G265A	NM_018216	NP_060686	Q9NVE7	PANK4_HUMAN	pantothenate kinase 4	304					coenzyme A biosynthetic process	cytoplasm	ATP binding|pantothenate kinase activity			upper_aerodigestive_tract(1)|large_intestine(1)|ovary(1)	3	all_cancers(77;0.000158)|all_epithelial(69;8.01e-05)|all_lung(157;0.0212)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.18e-20)|all_lung(118;1.67e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;1.54e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.95e-23)|GBM - Glioblastoma multiforme(42;2.81e-08)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.00445)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		GGCCAGCTGCCCAATGTCGTT	0.577													4	71					0	0	0.00024832	0	0
ICMT	23463	broad.mit.edu	37	1	6285203	6285203	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:6285203C>G	uc001amk.2	-	5	865	c.792G>C	c.(790-792)CTG>CTC	p.L264L	ICMT_uc001aml.2_Silent_p.L168L	NM_012405	NP_036537	O60725	ICMT_HUMAN	isoprenylcysteine carboxyl methyltransferase	264					protein targeting to membrane	endoplasmic reticulum membrane|integral to membrane|membrane fraction	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity				0	Ovarian(185;0.0634)	all_cancers(23;5.85e-39)|all_epithelial(116;2.4e-22)|all_lung(118;2.65e-08)|Lung NSC(185;6.45e-07)|all_neural(13;3.18e-06)|all_hematologic(16;8.99e-06)|Acute lymphoblastic leukemia(12;0.000365)|Breast(487;0.000688)|Renal(390;0.0007)|Colorectal(325;0.00104)|Glioma(11;0.00203)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)|Medulloblastoma(700;0.211)		Epithelial(90;5.52e-38)|GBM - Glioblastoma multiforme(13;6.51e-32)|OV - Ovarian serous cystadenocarcinoma(86;3.03e-19)|Colorectal(212;7.08e-08)|COAD - Colon adenocarcinoma(227;8.35e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|BRCA - Breast invasive adenocarcinoma(365;0.00109)|STAD - Stomach adenocarcinoma(132;0.00313)|READ - Rectum adenocarcinoma(331;0.0642)|Lung(427;0.182)		TCTTATACTCCAGGTACTCCT	0.562													4	171					0	0	3.59834e-05	0	0
TNFRSF25	8718	broad.mit.edu	37	1	6525501	6525501	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:6525501C>G	uc001ane.2	-	2	247	c.159G>C	c.(157-159)GCG>GCC	p.A53A	TNFRSF25_uc001ana.2_Silent_p.A53A|TNFRSF25_uc001anb.2_RNA|TNFRSF25_uc001anc.2_RNA|TNFRSF25_uc001and.2_5'UTR|TNFRSF25_uc009vlz.2_RNA|TNFRSF25_uc001anf.2_Silent_p.A53A|TNFRSF25_uc001ang.2_Silent_p.A53A|TNFRSF25_uc001anh.2_Silent_p.A53A|TNFRSF25_uc001ani.1_Silent_p.A53A	NM_003790	NP_003781	Q93038	TNR25_HUMAN	tumor necrosis factor receptor superfamily,	53	TNFR-Cys 1.|Extracellular (Potential).				apoptosis|induction of apoptosis by extracellular signals	cytosol|extracellular region|integral to plasma membrane	tumor necrosis factor receptor activity			central_nervous_system(2)|breast(1)	3	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Acute lymphoblastic leukemia(12;0.00157)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;4.58e-35)|GBM - Glioblastoma multiforme(13;3.06e-27)|Colorectal(212;6.01e-08)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|BRCA - Breast invasive adenocarcinoma(365;0.00105)|STAD - Stomach adenocarcinoma(132;0.00158)|READ - Rectum adenocarcinoma(331;0.0419)		GCCACTTACCCGCTGGGCAGC	0.637													5	81					0	0	0.000274275	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6529397	6529397	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:6529397G>C	uc001ano.1	-	19	2316	c.2215C>G	c.(2215-2217)CAG>GAG	p.Q739E	PLEKHG5_uc001ann.1_Missense_Mutation_p.Q720E|PLEKHG5_uc001anq.1_Missense_Mutation_p.Q760E|PLEKHG5_uc001anp.1_Missense_Mutation_p.Q760E|PLEKHG5_uc001anj.1_Missense_Mutation_p.Q244E|PLEKHG5_uc009vma.1_Missense_Mutation_p.Q523E|PLEKHG5_uc010nzr.1_Missense_Mutation_p.Q752E|PLEKHG5_uc001ank.1_Missense_Mutation_p.Q683E|PLEKHG5_uc009vmb.1_Missense_Mutation_p.Q683E|PLEKHG5_uc001anl.1_Missense_Mutation_p.Q683E|PLEKHG5_uc001anm.1_Missense_Mutation_p.Q683E|PLEKHG5_uc001anr.1_5'Flank	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	739	PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		GCACTCACCTGGGCATTGTAA	0.557													4	156					0	0	0.00024832	0	0
CAMTA1	23261	broad.mit.edu	37	1	6880265	6880265	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:6880265G>T	uc001aoi.2	+	2	277	c.70G>T	c.(70-72)GGA>TGA	p.G24*	CAMTA1_uc001aoh.2_RNA	NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	24					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		tgtattctgcggaacTAGCAC	0.279													6	87					0.000442599	0.00445669	0.000442599	1	0
ENO1	2023	broad.mit.edu	37	1	8922989	8922989	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:8922989G>C	uc001apj.1	-	11	1343	c.1192C>G	c.(1192-1194)CCT>GCT	p.P398A	ENO1_uc001api.1_Missense_Mutation_p.P302A|ENO1_uc001apk.1_Missense_Mutation_p.P343A|ENO1_uc001apl.1_Intron|ENO1_uc009vmi.1_Missense_Mutation_p.P355A|ENO1_uc009vmj.1_Intron|ENO1_uc009vmk.1_Missense_Mutation_p.P272A	NM_001428	NP_001419	P06733	ENOA_HUMAN	enolase 1	398					gluconeogenesis|glycolysis|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|response to virus	phosphopyruvate hydratase complex|plasma membrane|sarcomere	DNA binding|magnesium ion binding|phosphopyruvate hydratase activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|kidney(1)|central_nervous_system(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;2.54e-20)|all_lung(118;2.99e-06)|Lung NSC(185;6.25e-06)|Renal(390;0.000147)|Breast(348;0.00086)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;2.42e-07)|COAD - Colon adenocarcinoma(227;2.78e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		GATCGGCAAGGGGCACCAGTC	0.562											OREG0013068	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	42					0	0	0.000602214	0	0
PIK3CD	5293	broad.mit.edu	37	1	9782034	9782034	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:9782034G>C	uc001aqb.3	+	17	2265	c.2057G>C	c.(2056-2058)GGG>GCG	p.G686A	PIK3CD_uc010oaf.1_Missense_Mutation_p.G685A|PIK3CD_uc001aqe.3_Missense_Mutation_p.G710A	NM_005026	NP_005017	O00329	PK3CD_HUMAN	catalytic phosphatidylinositol 3-kinase delta	686					phosphatidylinositol-mediated signaling|protein phosphorylation	phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(4)|skin(2)|central_nervous_system(1)	7	all_lung(157;0.222)	all_lung(118;2.44e-05)|Lung NSC(185;4.08e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0231)|Colorectal(212;7.52e-08)|COAD - Colon adenocarcinoma(227;1.78e-05)|Kidney(185;0.000322)|KIRC - Kidney renal clear cell carcinoma(229;0.00114)|BRCA - Breast invasive adenocarcinoma(304;0.0021)|STAD - Stomach adenocarcinoma(132;0.00395)|READ - Rectum adenocarcinoma(331;0.0419)		GCCCACCAGGGGGAAGCACTG	0.662											OREG0013082	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	64					0	0	0.00024832	0	0
KIF1B	23095	broad.mit.edu	37	1	10434499	10434499	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:10434499C>G	uc001aqx.3	+	46	5274	c.5072C>G	c.(5071-5073)CCA>CGA	p.P1691R	KIF1B_uc001aqw.3_Missense_Mutation_p.P1645R|KIF1B_uc001aqy.2_Missense_Mutation_p.P1665R|KIF1B_uc001aqz.2_Missense_Mutation_p.P1691R|KIF1B_uc001ara.2_Missense_Mutation_p.P1651R|KIF1B_uc001arb.2_Missense_Mutation_p.P1677R	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	1691					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		AATCTTGTTCCAGATATTGAA	0.428													5	167					0	0	3.59834e-05	0	0
CASZ1	54897	broad.mit.edu	37	1	10705124	10705124	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:10705124C>A	uc001aro.2	-	18	4038	c.3718G>T	c.(3718-3720)GGG>TGG	p.G1240W		NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	1240					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		TGGTAGTGCCCACGCATTCGG	0.632													6	53					0.000157383	0.00173811	0.000157383	1	0
TARDBP	23435	broad.mit.edu	37	1	11073977	11073977	+	Missense_Mutation	SNP	G	T	T	rs35714982		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:11073977G>T	uc001art.2	+	2	327	c.193G>T	c.(193-195)GAT>TAT	p.D65Y	TARDBP_uc010oap.1_Missense_Mutation_p.Q3H	NM_007375	NP_031401	Q13148	TADBP_HUMAN	TAR DNA binding protein	65					3'-UTR-mediated mRNA stabilization|cell death|mRNA processing|negative regulation by host of viral transcription|RNA splicing|transcription from RNA polymerase II promoter	nucleus	double-stranded DNA binding|mRNA 3'-UTR binding|nucleotide binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Ovarian(185;0.249)	Lung NSC(185;1.04e-05)|all_lung(284;1.31e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0578)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.37e-07)|COAD - Colon adenocarcinoma(227;7.38e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)		GCATGCCCCAGATGCTGGCTG	0.488													8	142					0.000442599	0.00445669	0.000442599	1	0
PTCHD2	57540	broad.mit.edu	37	1	11585237	11585237	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:11585237C>T	uc001ash.3	+	12	2619	c.2481C>T	c.(2479-2481)TTC>TTT	p.F827F	PTCHD2_uc001asi.1_Silent_p.F827F	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	827	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CCGTAGATTTCCCAGGCACCG	0.567													15	128					0	0	0.00074312	0	0
PTCHD2	57540	broad.mit.edu	37	1	11586749	11586749	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:11586749C>G	uc001ash.3	+	13	2793	c.2655C>G	c.(2653-2655)ACC>ACG	p.T885T	PTCHD2_uc001asi.1_Silent_p.T885T	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	885	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		AGAAGCTGACCGCTTGTATGT	0.592													5	141					0	0	3.59834e-05	0	0
AGTRAP	57085	broad.mit.edu	37	1	11808533	11808533	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:11808533C>G	uc001asv.2	+	4	354	c.230C>G	c.(229-231)CCG>CGG	p.P77R	AGTRAP_uc001ast.2_Silent_p.P109P|AGTRAP_uc001asu.2_Silent_p.P109P|AGTRAP_uc001asw.2_Missense_Mutation_p.P77R|AGTRAP_uc001asx.2_Silent_p.P65P	NM_020350	NP_065083	Q6RW13	ATRAP_HUMAN	angiotensin II receptor-associated protein	77	Extracellular (Potential).					cytoplasmic vesicle membrane|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	protein binding		AGTRAP/BRAF(2)	stomach(2)	2	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.46e-06)|COAD - Colon adenocarcinoma(227;0.000256)|BRCA - Breast invasive adenocarcinoma(304;0.0003)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0649)		ATCTTCTACCCGCGGGTCAGC	0.597													3	58					0	0	6.4e-05	0	0
MIIP	60672	broad.mit.edu	37	1	12089197	12089197	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:12089197G>A	uc001ato.1	+	5	835	c.655G>A	c.(655-657)GAA>AAA	p.E219K		NM_021933	NP_068752	Q5JXC2	MIIP_HUMAN	invasion inhibitory protein 45	219										ovary(1)	1						CAGCCATCCTGAGTGAGCAGG	0.652													6	46					0	0	0.000157383	0	0
AADACL4	343066	broad.mit.edu	37	1	12726682	12726682	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:12726682C>T	uc001auf.2	+	4	1160	c.1160C>T	c.(1159-1161)GCT>GTT	p.A387V		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	387	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		GATAAGAAGGCTCTCTCTTTC	0.478													10	132					0	0	0.000442599	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887328	12887328	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:12887328T>C	uc001auk.2	-	3	725	c.529A>G	c.(529-531)ATA>GTA	p.I177V		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	177											0						ATGGGCAGTATCCACTTGCAA	0.488													7	254					0	0	0.000442599	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887546	12887546	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:12887546C>T	uc001auk.2	-	3	507	c.311G>A	c.(310-312)CGG>CAG	p.R104Q		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	104											0						CAAGGGCTGCCGTTCTCTCAT	0.493													7	286					0	0	8.12818e-05	0	0
LOC440563	440563	broad.mit.edu	37	1	13183833	13183833	+	Missense_Mutation	SNP	C	T	T	rs115597766	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:13183833C>T	uc010obg.1	-	1	135	c.40G>A	c.(40-42)GTG>ATG	p.V14M		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	14						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						CGGGAGTTCACGGAGTGAGGA	0.468													15	70					0	0	0.000229342	0	0
DDI2	84301	broad.mit.edu	37	1	15960047	15960047	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:15960047G>A	uc001awx.1	+	4	715	c.619G>A	c.(619-621)GAA>AAA	p.E207K	DDI2_uc001aww.2_Missense_Mutation_p.E207K|DDI2_uc009voj.1_5'UTR	NM_032341	NP_115717	Q5TDH0	DDI2_HUMAN	DNA-damage inducible protein 2	207					proteolysis		aspartic-type endopeptidase activity				0		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00327)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.03e-07)|COAD - Colon adenocarcinoma(227;4.48e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00773)|READ - Rectum adenocarcinoma(331;0.0656)		GGCAAAGATAGAAGAAGATAT	0.468													35	227					0	0	0.000589545	0	0
NBPF1	55672	broad.mit.edu	37	1	16893763	16893763	+	Missense_Mutation	SNP	T	C	C	rs1065056		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:16893763T>C	uc009vos.1	-	26	3863	c.2975A>G	c.(2974-2976)TAT>TGT	p.Y992C	NBPF1_uc009vot.1_Missense_Mutation_p.Y375C|NBPF1_uc001ayz.1_Missense_Mutation_p.Y375C|NBPF1_uc010oce.1_Missense_Mutation_p.Y646C	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	992	NBPF 6.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		CAGTTCAAGATAACCTGAAGG	0.493													8	661					0	0	0.000978159	0	0
NBPF1	55672	broad.mit.edu	37	1	16907919	16907919	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:16907919G>T	uc009vos.1	-	15	2263	c.1375C>A	c.(1375-1377)CCC>ACC	p.P459T	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Missense_Mutation_p.P188T	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	459	NBPF 2.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TGTTACCTGGGGGCAGATGAT	0.433													9	397					0.000566183	0.0056887	0.000566183	1	0
SDHB	6390	broad.mit.edu	37	1	17350487	17350487	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:17350487C>T	uc001bae.2	-	6	774	c.623G>A	c.(622-624)GGG>GAG	p.G208E		NM_003000	NP_002991	P21912	DHSB_HUMAN	succinate dehydrogenase complex, subunit B, iron	208					respiratory electron transport chain|transport|tricarboxylic acid cycle	mitochondrial respiratory chain complex II	2 iron, 2 sulfur cluster binding|3 iron, 4 sulfur cluster binding|4 iron, 4 sulfur cluster binding|electron carrier activity|metal ion binding|protein binding|succinate dehydrogenase (ubiquinone) activity|ubiquinone binding			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0049)|COAD - Colon adenocarcinoma(227;1.18e-05)|BRCA - Breast invasive adenocarcinoma(304;2.41e-05)|Kidney(64;0.000188)|KIRC - Kidney renal clear cell carcinoma(64;0.00273)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.19)	Succinic acid(DB00139)	AACTGCAGGCCCCAGATATTT	0.493			Mis|N|F			paraganglioma|pheochromocytoma			Familial_Paragangliomas|Carney-Stratakis_syndrome|Cowden_syndrome				4	60					0	0	3.59834e-05	0	0
PADI3	51702	broad.mit.edu	37	1	17607179	17607179	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:17607179G>A	uc001bai.2	+	15	1689	c.1649G>A	c.(1648-1650)TGG>TAG	p.W550*		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	550					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	TGCATCGACTGGAACCGTGAG	0.592													8	74					0	0	0.000157383	0	0
PADI6	353238	broad.mit.edu	37	1	17706441	17706441	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:17706441C>G	uc001bak.1	+	4	394	c.394C>G	c.(394-396)CGC>GGC	p.R132G		NM_207421	NP_997304	Q6TGC4	PADI6_HUMAN	peptidylarginine deiminase type 6	124					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	AGACATCTACCGCAATGGGCA	0.507													4	78					0	0	0.000157383	0	0
UBR4	23352	broad.mit.edu	37	1	19423029	19423029	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:19423029G>A	uc001bbi.2	-	92	13510	c.13506C>T	c.(13504-13506)CGC>CGT	p.R4502R	UBR4_uc010ocv.1_Silent_p.R65R|UBR4_uc009vph.2_Silent_p.R136R|UBR4_uc010ocw.1_Silent_p.R166R|UBR4_uc001bbg.2_Silent_p.R213R|UBR4_uc001bbh.2_Silent_p.R211R	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	4502					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TTAGAAGGTGGCGTCCCTGCT	0.522													14	125					0	0	0.000308642	0	0
UBR4	23352	broad.mit.edu	37	1	19439311	19439311	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:19439311C>G	uc001bbi.2	-	78	11512	c.11508G>C	c.(11506-11508)AGG>AGC	p.R3836S	UBR4_uc001bbj.1_3'UTR	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3836					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TGGCTGCTTCCCTCTGCTGTA	0.483													4	226					0	0	0.00024832	0	0
UBR4	23352	broad.mit.edu	37	1	19491828	19491828	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:19491828C>A	uc001bbi.2	-	31	4231	c.4227G>T	c.(4225-4227)CAG>CAT	p.Q1409H	UBR4_uc001bbm.1_Missense_Mutation_p.Q620H	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	1409					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CCATCATGATCTGTACAAGTT	0.418													9	256					2.31682e-05	0.000280436	0.000308642	1	0
TMCO4	255104	broad.mit.edu	37	1	20097816	20097816	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:20097816C>A	uc001bcn.2	-	5	581	c.339G>T	c.(337-339)CCG>CCT	p.P113P	TMCO4_uc001bcm.2_Silent_p.P113P|TMCO4_uc001bco.1_Silent_p.P113P|TMCO4_uc001bcp.1_Silent_p.P113P|TMCO4_uc009vpn.1_Silent_p.P113P|TMCO4_uc001bcq.1_Silent_p.P113P	NM_181719	NP_859070	Q5TGY1	TMCO4_HUMAN	transmembrane and coiled-coil domains 4	113						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00708)|COAD - Colon adenocarcinoma(152;2.28e-05)|BRCA - Breast invasive adenocarcinoma(304;5.8e-05)|Kidney(64;0.000367)|GBM - Glioblastoma multiforme(114;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00459)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0862)|Lung(427;0.223)		TGATCACCGTCGGGTCGTCCT	0.478													5	136					8.12818e-05	0.000938396	8.12818e-05	1	0
EIF4G3	8672	broad.mit.edu	37	1	21268757	21268757	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:21268757C>G	uc001bec.2	-	9	978	c.722G>C	c.(721-723)GGA>GCA	p.G241A	EIF4G3_uc010odi.1_5'UTR|EIF4G3_uc010odj.1_Missense_Mutation_p.G240A|EIF4G3_uc009vpz.2_Intron|EIF4G3_uc001bed.2_Missense_Mutation_p.G241A|EIF4G3_uc001bef.2_Missense_Mutation_p.G240A|EIF4G3_uc001bee.2_Missense_Mutation_p.G247A|EIF4G3_uc001beg.2_Missense_Mutation_p.G240A|EIF4G3_uc010odk.1_Missense_Mutation_p.G241A|EIF4G3_uc001beh.2_Missense_Mutation_p.G252A	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	241					interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		TTTCTTCTCTCCACTGAGGAC	0.428													4	198					0	0	3.59834e-05	0	0
CDC42	998	broad.mit.edu	37	1	22413312	22413312	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:22413312C>A	uc001bfq.2	+	6	731	c.439C>A	c.(439-441)CGT>AGT	p.R147S	CDC42_uc009vqg.1_Missense_Mutation_p.R147S|CDC42_uc001bfp.2_Missense_Mutation_p.R147S|CDC42_uc001bfr.2_Missense_Mutation_p.R147S|CDC42_uc010odr.1_Missense_Mutation_p.R192S|CDC42_uc010ods.1_Missense_Mutation_p.R189S|CDC42_uc009vqh.2_Missense_Mutation_p.R106S	NM_001039802	NP_001034891	P60953	CDC42_HUMAN	cell division cycle 42 isoform 1	147					actin cytoskeleton organization|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|establishment or maintenance of cell polarity|macrophage differentiation|muscle cell differentiation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of protein complex assembly|positive regulation of muscle cell differentiation|positive regulation of pseudopodium assembly|regulation of filopodium assembly|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|filopodium|plasma membrane	GTP binding|GTPase activity|protein binding|thioesterase binding			haematopoietic_and_lymphoid_tissue(1)	1		Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;6.55e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)|Prostate(1639;0.0792)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0452)|OV - Ovarian serous cystadenocarcinoma(117;7.32e-26)|Colorectal(126;1.35e-07)|COAD - Colon adenocarcinoma(152;7.73e-06)|GBM - Glioblastoma multiforme(114;8.62e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000649)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00767)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.207)		AAAGCTGGCCCGTGACCTGAA	0.448													9	191					2.31682e-05	0.000280436	0.000308642	1	0
HNRNPR	10236	broad.mit.edu	37	1	23648120	23648120	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:23648120C>G	uc001bgr.3	-	7	871	c.712G>C	c.(712-714)GGA>CGA	p.G238R	HNRNPR_uc001bgp.3_Missense_Mutation_p.G238R|HNRNPR_uc009vqk.2_Missense_Mutation_p.G137R|HNRNPR_uc001bgs.3_Missense_Mutation_p.G137R|HNRNPR_uc010odw.1_Missense_Mutation_p.G200R|HNRNPR_uc010odx.1_Missense_Mutation_p.G78R|HNRNPR_uc009vql.2_Missense_Mutation_p.G99R	NM_005826	NP_005817	O43390	HNRPR_HUMAN	heterogeneous nuclear ribonucleoprotein R	238	RRM 1.					catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00394)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;6.83e-27)|Colorectal(126;6.01e-08)|COAD - Colon adenocarcinoma(152;3.32e-06)|GBM - Glioblastoma multiforme(114;6.69e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00357)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0875)|LUSC - Lung squamous cell carcinoma(448;0.19)		ATGCACACTCCAAGGTGTTTA	0.403													4	265					0	0	0.000157383	0	0
GRHL3	57822	broad.mit.edu	37	1	24663145	24663145	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:24663145C>T	uc001biy.2	+	4	501	c.455C>T	c.(454-456)CCC>CTC	p.P152L	GRHL3_uc001bix.2_Missense_Mutation_p.P147L|GRHL3_uc001biz.2_Missense_Mutation_p.P54L	NM_021180	NP_067003	Q8TE85	GRHL3_HUMAN	sister-of-mammalian grainyhead protein isoform	147					regulation of actin cytoskeleton organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.00171)|all_lung(284;0.00226)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;8.72e-25)|Colorectal(126;4.38e-08)|COAD - Colon adenocarcinoma(152;1.84e-06)|GBM - Glioblastoma multiforme(114;0.000132)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00151)|KIRC - Kidney renal clear cell carcinoma(1967;0.00377)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.143)		AAGGCAGCTCCCCTCCCTGCA	0.562													17	127					0	0	0.000422831	0	0
NIPAL3	57185	broad.mit.edu	37	1	24795475	24795475	+	Splice_Site	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:24795475G>C	uc001bjh.2	+	12	1429	c.1022_splice	c.e12-1	p.G341_splice	NIPAL3_uc009vrc.2_Splice_Site_p.G259_splice	NM_020448	NP_065181	Q6P499	NPAL3_HUMAN	NIPA-like domain containing 3							integral to membrane					0						TTTCATTTCAGGTATGCAGAA	0.458													4	90					0	0	3.59834e-05	0	0
RCAN3	11123	broad.mit.edu	37	1	24859595	24859595	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:24859595G>C	uc001bjj.2	+	4	705	c.392G>C	c.(391-393)CGG>CCG	p.R131P	RCAN3_uc009vrd.2_Intron|RCAN3_uc009vre.2_Missense_Mutation_p.R73P|RCAN3_uc009vrf.2_Intron|RCAN3_uc009vrg.2_Intron	NM_013441	NP_038469	Q9UKA8	RCAN3_HUMAN	Down syndrome critical region gene 1-like 2	131					anatomical structure morphogenesis|calcium-mediated signaling		nucleotide binding|RNA binding|troponin I binding				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00125)|Ovarian(437;0.00473)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0427)|OV - Ovarian serous cystadenocarcinoma(117;1.13e-24)|Colorectal(126;6.09e-08)|COAD - Colon adenocarcinoma(152;3.33e-06)|GBM - Glioblastoma multiforme(114;0.000923)|BRCA - Breast invasive adenocarcinoma(304;0.0018)|KIRC - Kidney renal clear cell carcinoma(1967;0.00359)|STAD - Stomach adenocarcinoma(196;0.00493)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.14)		GGCGAAGTGCGGGACAAGTCC	0.567													3	46					0	0	6.4e-05	0	0
TMEM50A	23585	broad.mit.edu	37	1	25669550	25669550	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:25669550C>A	uc001bke.2	+	3	342	c.192C>A	c.(190-192)ACC>ACA	p.T64T	TMEM50A_uc010oeq.1_Silent_p.T64T|TMEM50A_uc009vrr.2_Intron|TMEM50A_uc009vrs.2_Intron	NM_014313	NP_055128	O95807	TM50A_HUMAN	small membrane protein 1	64	Helical; (Potential).					endoplasmic reticulum|integral to membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0422)|OV - Ovarian serous cystadenocarcinoma(117;3.47e-27)|Colorectal(126;1.1e-08)|COAD - Colon adenocarcinoma(152;7.48e-07)|STAD - Stomach adenocarcinoma(196;0.00035)|BRCA - Breast invasive adenocarcinoma(304;0.00047)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|GBM - Glioblastoma multiforme(114;0.00106)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.204)		TTATAGCAACCATAGCCTTCC	0.348													8	134					0.000673444	0.00655963	0.000673444	1	0
CATSPER4	378807	broad.mit.edu	37	1	26527421	26527421	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:26527421G>A	uc010oez.1	+	8	1088	c.1088G>A	c.(1087-1089)GGA>GAA	p.G363E	CATSPER4_uc010oey.1_Missense_Mutation_p.G185E|CATSPER4_uc009vsf.2_RNA	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	363	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		CCCCTTGCGGGAGGCCCCCTG	0.562													11	54					0	0	0.000978159	0	0
CCDC21	64793	broad.mit.edu	37	1	26597549	26597549	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:26597549C>A	uc001bls.1	+	10	1825	c.1694C>A	c.(1693-1695)CCA>CAA	p.P565Q	CCDC21_uc001blr.2_Missense_Mutation_p.P565Q|CCDC21_uc010ofa.1_Missense_Mutation_p.P514Q|CCDC21_uc001blt.1_5'UTR	NM_022778	NP_073615	Q6P2H3	CEP85_HUMAN	coiled-coil domain containing 21	565	Potential.					centrosome|nucleolus|spindle pole					0		all_cancers(24;7e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.6e-26)|Colorectal(126;1.65e-08)|COAD - Colon adenocarcinoma(152;9.48e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00155)|GBM - Glioblastoma multiforme(114;0.00917)|READ - Rectum adenocarcinoma(331;0.0649)		GGAGAAGGTCCAGAAGTGGAA	0.438													7	100					0.000673444	0.00655963	0.000673444	1	0
GPN2	54707	broad.mit.edu	37	1	27215461	27215461	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:27215461C>G	uc001bnd.1	-	2	849	c.567G>C	c.(565-567)CTG>CTC	p.L189L		NM_018066	NP_060536	Q9H9Y4	GPN2_HUMAN	ATP binding domain 1 family, member B	189							GTP binding				0						AGCTCTTACCCAGCTTCCCAT	0.547													6	245					0	0	0.000157383	0	0
GPATCH3	63906	broad.mit.edu	37	1	27219262	27219262	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:27219262G>C	uc001bne.2	-	5	1161	c.1132C>G	c.(1132-1134)CGA>GGA	p.R378G	GPN2_uc001bnd.1_5'Flank|GPATCH3_uc009vsp.1_Missense_Mutation_p.R189G	NM_022078	NP_071361	Q96I76	GPTC3_HUMAN	G patch domain containing 3	378						intracellular	nucleic acid binding				0		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;3.97e-51)|OV - Ovarian serous cystadenocarcinoma(117;9.55e-30)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|STAD - Stomach adenocarcinoma(196;0.000595)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|READ - Rectum adenocarcinoma(331;0.0419)		ACAGAGTCTCGGGCATCCTTG	0.537													4	213					0	0	0.000157383	0	0
RPA2	6118	broad.mit.edu	37	1	28233734	28233734	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:28233734C>A	uc001bpe.1	-	3	459	c.177G>T	c.(175-177)TTG>TTT	p.L59F	RPA2_uc001bpd.1_Missense_Mutation_p.L67F|RPA2_uc010ofp.1_5'UTR	NM_002946	NP_002937	P15927	RFA2_HUMAN	replication protein A2, 32kDa	59					cell cycle checkpoint|DNA recombinase assembly|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA gap filling|regulation of double-strand break repair via homologous recombination|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	DNA replication factor A complex|PML body	protein phosphatase binding|single-stranded DNA binding			skin(1)	1		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00588)|all_lung(284;0.00645)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0429)|OV - Ovarian serous cystadenocarcinoma(117;3.62e-24)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;1.75e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00294)|STAD - Stomach adenocarcinoma(196;0.00308)|BRCA - Breast invasive adenocarcinoma(304;0.00613)|READ - Rectum adenocarcinoma(331;0.0649)		CTTCATCAACCAAAGTGGCAG	0.348								Direct_reversal_of_damage|NER					10	293					1.5842e-08	2.08899e-07	0.000151284	1	0
RCC1	1104	broad.mit.edu	37	1	28861871	28861871	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:28861871C>G	uc001bqg.1	+	6	725	c.640C>G	c.(640-642)CGT>GGT	p.R214G	SNHG3-RCC1_uc001bqa.1_Missense_Mutation_p.R214G|SNHG3-RCC1_uc001bqb.1_Missense_Mutation_p.R214G|SNHG3-RCC1_uc001bqc.1_Missense_Mutation_p.R214G|RCC1_uc001bqe.1_Missense_Mutation_p.R231G|RCC1_uc001bqf.1_Missense_Mutation_p.R245G	NM_001269	NP_001260	P18754	RCC1_HUMAN	regulator of chromosome condensation 1 isoform	214	RCC1 4.				cell division|chromosome segregation|G1/S transition of mitotic cell cycle|mitosis|mitotic spindle organization|regulation of mitosis|regulation of S phase of mitotic cell cycle|spindle assembly|viral reproduction	condensed nuclear chromosome|cytoplasm|nuclear chromatin|nuclear membrane|nucleoplasm	histone binding|nucleosomal DNA binding|Ran guanyl-nucleotide exchange factor activity			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000318)|all_lung(284;0.000434)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.00989)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|KIRC - Kidney renal clear cell carcinoma(1967;0.0101)|BRCA - Breast invasive adenocarcinoma(304;0.022)|READ - Rectum adenocarcinoma(331;0.0649)		ATTTGCCAACCGTGGTGGCCG	0.597													4	50					0	0	3.59834e-05	0	0
TAF12	6883	broad.mit.edu	37	1	28930060	28930060	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:28930060G>T	uc001bqw.2	-	5	570	c.477C>A	c.(475-477)ACC>ACA	p.T159T	TAF12_uc001bqx.2_Silent_p.T159T|TAF12_uc001bqy.2_Silent_p.T159T	NM_005644	NP_005635	Q16514	TAF12_HUMAN	TAF12 RNA polymerase II, TATA box binding	159					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	PCAF complex|STAGA complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000451)|all_lung(284;0.00063)|Renal(390;0.00121)|Breast(348;0.00502)|all_neural(195;0.0227)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)		Colorectal(126;3.21e-08)|COAD - Colon adenocarcinoma(152;1.74e-06)|STAD - Stomach adenocarcinoma(196;0.00303)|KIRC - Kidney renal clear cell carcinoma(1967;0.0109)|BRCA - Breast invasive adenocarcinoma(304;0.0228)|READ - Rectum adenocarcinoma(331;0.0649)		GTTATTTCTTGGTTGTTTTCC	0.423													8	115					0.000978159	0.00917326	0.000978159	1	0
TMEM200B	399474	broad.mit.edu	37	1	29448325	29448325	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:29448325G>T	uc001brn.1	-	2	76	c.16C>A	c.(16-18)CCC>ACC	p.P6T		NM_001003682	NP_001003682	Q69YZ2	T200B_HUMAN	transmembrane protein 200B	6						integral to membrane					0		Colorectal(325;3.46e-05)|Breast(348;0.00765)|Lung NSC(340;0.0153)|all_lung(284;0.0173)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;7.32e-08)|COAD - Colon adenocarcinoma(152;4.92e-06)|STAD - Stomach adenocarcinoma(196;0.00618)|BRCA - Breast invasive adenocarcinoma(304;0.0501)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.126)		CATTCTTCGGGGCTCCCGGCC	0.542													4	11					6.5536e-12	8.75845e-11	0.000157383	1	0
SDC3	9672	broad.mit.edu	37	1	31347401	31347401	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:31347401C>A	uc001bse.2	-	4	952	c.905G>T	c.(904-906)CGG>CTG	p.R302L	SDC3_uc001bsd.2_Missense_Mutation_p.R244L	NM_014654	NP_055469	O75056	SDC3_HUMAN	syndecan 3	302	Extracellular (Potential).|Ser/Thr-rich (mucin-like).					integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(586;0.0393)|Colorectal(325;0.0466)|all_neural(195;0.0966)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)		STAD - Stomach adenocarcinoma(196;0.0197)|READ - Rectum adenocarcinoma(331;0.0649)		TGGCTCATCCCGGATTGTGGT	0.587													5	97					0.000274275	0.00290969	0.000274275	1	0
BAI2	576	broad.mit.edu	37	1	32205182	32205182	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:32205182G>C	uc001btn.2	-	15	2576	c.2222C>G	c.(2221-2223)CCC>CGC	p.P741R	BAI2_uc001btp.1_5'Flank|BAI2_uc010ogn.1_5'Flank|BAI2_uc010ogo.1_Missense_Mutation_p.P383R|BAI2_uc010ogp.1_Missense_Mutation_p.P674R|BAI2_uc010ogq.1_Missense_Mutation_p.P741R|BAI2_uc001bto.2_Missense_Mutation_p.P741R|BAI2_uc001btq.1_Missense_Mutation_p.P674R|BAI2_uc010ogr.1_3'UTR	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	741	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		GCCCCGCATGGGGAACGTGAT	0.562													3	51					0	0	0.000602214	0	0
KPNA6	23633	broad.mit.edu	37	1	32620206	32620206	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:32620206G>C	uc001bug.2	+	2	110	c.22G>C	c.(22-24)GGG>CGG	p.G8R	KPNA6_uc001buh.2_5'UTR|KPNA6_uc010ogx.1_Missense_Mutation_p.G5R|KPNA6_uc010ogy.1_Missense_Mutation_p.G13R|KPNA6_uc009vtz.2_5'Flank	NM_012316	NP_036448	O60684	IMA7_HUMAN	karyopherin alpha 6	8	IBB.				NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				GGCGAGCCCAGGGAAAGACAA	0.448													4	70					0	0	3.59834e-05	0	0
HDAC1	3065	broad.mit.edu	37	1	32782337	32782337	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:32782337C>A	uc001bvb.1	+	3	297	c.234C>A	c.(232-234)TCC>TCA	p.S78S	HDAC1_uc010ohd.1_Silent_p.S78S|HDAC1_uc010ohe.1_Silent_p.S15S|HDAC1_uc010ohf.1_Silent_p.S49S	NM_004964	NP_004955	Q13547	HDAC1_HUMAN	histone deacetylase 1	78	Histone deacetylase.				anti-apoptosis|blood coagulation|embryonic digit morphogenesis|epidermal cell differentiation|eyelid development in camera-type eye|fungiform papilla formation|hair follicle placode formation|histone H3 deacetylation|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of androgen receptor signaling pathway|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|odontogenesis of dentine-containing tooth|positive regulation of cell proliferation|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	cytosol|NuRD complex|Sin3 complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|identical protein binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|RNA polymerase II transcription corepressor activity|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)	3		Breast(348;0.000523)|Lung NSC(340;0.000992)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Lung SC(1967;0.113)		KIRC - Kidney renal clear cell carcinoma(1967;0.138)	Vorinostat(DB02546)	TCTTGCGCTCCATCCGTCCAG	0.507													8	182					0.000157383	0.00173811	0.000157383	1	0
BSDC1	55108	broad.mit.edu	37	1	32849596	32849596	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:32849596C>A	uc001bvh.3	-	4	239	c.192G>T	c.(190-192)ACG>ACT	p.T64T	BSDC1_uc010ohg.1_Silent_p.T81T|BSDC1_uc010ohh.1_Intron|BSDC1_uc010ohi.1_Intron|BSDC1_uc001bvg.3_RNA|BSDC1_uc001bvj.2_Intron|BSDC1_uc001bvi.2_Silent_p.T81T	NM_018045	NP_060515	Q9NW68	BSDC1_HUMAN	BSD domain containing 1 isoform b	64							protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				AGGAGCCTTCCGTCTGTATAG	0.537													6	98					0.000978159	0.00917326	0.000978159	1	0
S100PBP	64766	broad.mit.edu	37	1	33318690	33318690	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:33318690G>T	uc001bvz.2	+	6	1312	c.1035G>T	c.(1033-1035)GGG>GGT	p.G345G	S100PBP_uc001bwc.2_Silent_p.G345G|S100PBP_uc001bwd.2_RNA	NM_022753	NP_073590	Q96BU1	S1PBP_HUMAN	S100P binding protein isoform a	345						nucleus	calcium-dependent protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				GTATCTCGGGGGAGCTTTGTG	0.478													8	114					6.5536e-12	8.75845e-11	0.000157383	1	0
ZNF362	149076	broad.mit.edu	37	1	33760881	33760881	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:33760881G>A	uc001bxc.1	+	8	1291	c.1121G>A	c.(1120-1122)AGC>AAC	p.S374N		NM_152493	NP_689706	Q5T0B9	ZN362_HUMAN	zinc finger protein 362	374	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				TACTGCTGCAGCATGTGTGGG	0.632											OREG0013342	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	25					0	0	0.000274275	0	0
ZMYM1	79830	broad.mit.edu	37	1	35562950	35562950	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:35562950C>A	uc001bym.2	+	5	350	c.202C>A	c.(202-204)CTG>ATG	p.L68M	ZMYM1_uc001byl.1_Missense_Mutation_p.L68M|ZMYM1_uc009vus.1_RNA|ZMYM1_uc001byn.2_Missense_Mutation_p.L68M|ZMYM1_uc010ohu.1_Missense_Mutation_p.L68M|ZMYM1_uc001byo.2_Translation_Start_Site|ZMYM1_uc009vut.2_Translation_Start_Site	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM domain containing 1	68						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TCAGCTTTCTCTGGCATCATC	0.378													9	212					0.000442599	0.00445669	0.000442599	1	0
KIAA0319L	79932	broad.mit.edu	37	1	35925906	35925906	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:35925906C>G	uc001byx.2	-	9	1685	c.1427G>C	c.(1426-1428)AGC>ACC	p.S476T	KIAA0319L_uc010ohv.1_Missense_Mutation_p.S118T	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	476	PKD 2.|Extracellular (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CCTAATTTACCTGAAAGTGTA	0.368													4	81					0	0	0.000157383	0	0
CLSPN	63967	broad.mit.edu	37	1	36213533	36213533	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:36213533G>T	uc001bzi.2	-	14	2682	c.2602C>A	c.(2602-2604)CAG>AAG	p.Q868K	CLSPN_uc009vux.2_Missense_Mutation_p.Q804K	NM_022111	NP_071394	Q9HAW4	CLSPN_HUMAN	claspin	868					activation of protein kinase activity|cell cycle|cellular component disassembly involved in apoptosis|DNA repair|DNA replication|G2/M transition DNA damage checkpoint|mitotic cell cycle DNA replication checkpoint|peptidyl-serine phosphorylation	nucleoplasm	anaphase-promoting complex binding|DNA binding			breast(2)|ovary(2)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)	8		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AGTTGGCTCTGAGTGTCATCT	0.458													10	280					5.01169e-05	0.000591401	0.000566183	1	0
CLSPN	63967	broad.mit.edu	37	1	36230166	36230166	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:36230166C>G	uc001bzi.2	-	3	363	c.283G>C	c.(283-285)GGG>CGG	p.G95R	CLSPN_uc009vux.2_Missense_Mutation_p.G95R	NM_022111	NP_071394	Q9HAW4	CLSPN_HUMAN	claspin	95					activation of protein kinase activity|cell cycle|cellular component disassembly involved in apoptosis|DNA repair|DNA replication|G2/M transition DNA damage checkpoint|mitotic cell cycle DNA replication checkpoint|peptidyl-serine phosphorylation	nucleoplasm	anaphase-promoting complex binding|DNA binding			breast(2)|ovary(2)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)	8		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GTATTTTTCCCAGCATATAAA	0.378													4	182					0	0	0.000602214	0	0
EIF2C3	192669	broad.mit.edu	37	1	36492715	36492715	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:36492715G>C	uc001bzp.2	+	12	1663	c.1407G>C	c.(1405-1407)AAG>AAC	p.K469N	EIF2C3_uc001bzq.2_Missense_Mutation_p.K235N	NM_024852	NP_079128	Q9H9G7	AGO3_HUMAN	eukaryotic translation initiation factor 2C, 3	469					mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CTCCTTCCAGGGGTTTCACAG	0.468													4	179					0	0	3.59834e-05	0	0
GRIK3	2899	broad.mit.edu	37	1	37356694	37356694	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:37356694C>T	uc001caz.2	-	2	254	c.119G>A	c.(118-120)GGA>GAA	p.G40E	GRIK3_uc001cba.1_Missense_Mutation_p.G40E	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	40	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CTCGAAGATTCCTCCTGTGAA	0.498													25	95					0	0	0.00047179	0	0
MEAF6	64769	broad.mit.edu	37	1	37967583	37967583	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:37967583C>A	uc001cbg.1	-	5	372	c.355G>T	c.(355-357)GGG>TGG	p.G119W	MEAF6_uc001cbd.1_Missense_Mutation_p.G97W|MEAF6_uc001cbe.1_Missense_Mutation_p.G119W|MEAF6_uc009vvd.1_RNA|MEAF6_uc001cbf.1_RNA|MEAF6_uc001cbh.1_Missense_Mutation_p.G119W	NM_022756	NP_073593	Q9HAF1	EAF6_HUMAN	MYST/Esa1-associated factor 6	119					histone H2A acetylation|histone H3-K14 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|NuA4 histone acetyltransferase complex|nucleolus	protein binding				0						CTTTCCGTCCCACTTCCTGGC	0.483													9	128					0.000442599	0.00445669	0.000442599	1	0
MEAF6	64769	broad.mit.edu	37	1	37975111	37975111	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:37975111C>G	uc001cbg.1	-	3	256	c.239G>C	c.(238-240)CGG>CCG	p.R80P	MEAF6_uc001cbd.1_Missense_Mutation_p.R58P|MEAF6_uc001cbe.1_Missense_Mutation_p.R80P|MEAF6_uc009vvd.1_RNA|MEAF6_uc001cbf.1_RNA|MEAF6_uc001cbh.1_Missense_Mutation_p.R80P	NM_022756	NP_073593	Q9HAF1	EAF6_HUMAN	MYST/Esa1-associated factor 6	80					histone H2A acetylation|histone H3-K14 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|NuA4 histone acetyltransferase complex|nucleolus	protein binding				0						CTTAAACTTCCGGTTCCTTCG	0.473													5	192					0	0	3.59834e-05	0	0
MACF1	23499	broad.mit.edu	37	1	39715722	39715723	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:39715722_39715723CG>AT	uc010ois.1	+	5	524_525	c.319_320CG>AT	c.(319-321)CGG>ATG	p.R107M	MACF1_uc001cda.1_Missense_Mutation_p.R15M|MACF1_uc010oit.1_Missense_Mutation_p.R70M	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	107	Actin-binding.|CH 1.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TGAAGATCTGCGGGATGGCCAT	0.411													6	200					0	0	6.4e-05	0	0
ZMPSTE24	10269	broad.mit.edu	37	1	40737632	40737632	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:40737632G>C	uc001cfg.2	+	6	905	c.694G>C	c.(694-696)GGA>CGA	p.G232R		NM_005857	NP_005848	O75844	FACE1_HUMAN	zinc metallopeptidase STE24	232						endoplasmic reticulum membrane|Golgi membrane|integral to membrane	metal ion binding|metalloexopeptidase activity				0	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;6.3e-18)			TCTGCCTGAGGGAAAGCTTAA	0.373													4	148					0	0	0.000157383	0	0
COL9A2	1298	broad.mit.edu	37	1	40777211	40777212	+	Missense_Mutation	DNP	CG	AC	AC			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:40777211_40777212CG>AC	uc001cfh.1	-	10	549_550	c.479_480CG>GT	c.(478-480)CCG>CGT	p.P160R	COL9A2_uc001cfi.1_5'UTR	NM_001852	NP_001843	Q14055	CO9A2_HUMAN	alpha 2 type IX collagen precursor	160	Triple-helical region 4 (COL4).				axon guidance|skeletal system development	collagen type IX				ovary(2)	2	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.08e-17)			GGATGGTTCCCGGGCGACCCTG	0.629													7	93					0	0	6.4e-05	0	0
NFYC	4802	broad.mit.edu	37	1	41204606	41204606	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:41204606C>G	uc001cge.2	+	1	99	c.91C>G	c.(91-93)CGG>GGG	p.R31G	NFYC_uc010ojm.1_Missense_Mutation_p.R31G|NFYC_uc001cfx.3_Missense_Mutation_p.R31G|NFYC_uc009vwd.2_Missense_Mutation_p.R31G|NFYC_uc001cfz.2_Missense_Mutation_p.R31G|NFYC_uc010ojn.1_Missense_Mutation_p.R31G|NFYC_uc001cfy.3_Missense_Mutation_p.R31G|NFYC_uc001cgc.2_Missense_Mutation_p.R31G|NFYC_uc001cgb.2_Missense_Mutation_p.R31G|NFYC_uc001cgd.3_Missense_Mutation_p.R31G	NM_001142588	NP_001136060	Q13952	NFYC_HUMAN	nuclear transcription factor Y, gamma isoform 1	31					protein folding|regulation of transcription from RNA polymerase II promoter	CCAAT-binding factor complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			breast(2)|kidney(1)	3	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.72e-17)			GGAAGAAATCCGGAATTTAAC	0.423													4	61					0	0	0.00024832	0	0
CTPS	1503	broad.mit.edu	37	1	41466748	41466748	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:41466748C>G	uc001cgk.3	+	10	1561	c.1053C>G	c.(1051-1053)CCC>CCG	p.P351P	CTPS_uc010ojo.1_Silent_p.P120P|CTPS_uc001cgl.3_Silent_p.P351P|CTPS_uc010ojq.1_Silent_p.P195P|CTPS_uc009vwe.2_Silent_p.P71P	NM_001905	NP_001896	P17812	PYRG1_HUMAN	CTP synthase	351	Glutamine amidotransferase type-1.				CTP biosynthetic process|glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|response to drug	cytosol	ATP binding|CTP synthase activity|protein binding				0	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Breast(333;0.1)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)			L-Glutamine(DB00130)	AAGAAGAGCCCGTGCGCTACC	0.507													4	44					0	0	0.000602214	0	0
EDN2	1907	broad.mit.edu	37	1	41946854	41946854	+	Missense_Mutation	SNP	C	A	A	rs151334316		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:41946854C>A	uc001cgx.2	-	4	427	c.355G>T	c.(355-357)GGG>TGG	p.G119W	EDN2_uc001cgu.2_Intron|EDN2_uc001cgv.2_RNA|EDN2_uc009vwh.2_5'UTR|EDN2_uc001cgw.2_Intron|EDN2_uc009vwi.2_RNA|EDN2_uc009vwj.2_Intron	NM_001956	NP_001947	P20800	EDN2_HUMAN	endothelin 2 preproprotein	119					artery smooth muscle contraction|calcium-mediated signaling|cytokine-mediated signaling pathway|elevation of cytosolic calcium ion concentration|hormonal regulation of the force of heart contraction|inositol phosphate-mediated signaling|macrophage activation|macrophage chemotaxis|neutrophil chemotaxis|positive regulation of cell proliferation|positive regulation of heart rate|positive regulation of leukocyte chemotaxis|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of the force of heart contraction by chemical signal|prostaglandin biosynthetic process|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space	endothelin B receptor binding|hormone activity				0	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GGGACTGCCCCGGCTTCAGTC	0.637													4	40					3.59834e-05	0.000429	3.59834e-05	1	0
CCDC23	374969	broad.mit.edu	37	1	43282134	43282134	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:43282134G>T	uc001cib.2	-	2	317	c.82C>A	c.(82-84)CAG>AAG	p.Q28K	ERMAP_uc010ojw.1_5'Flank|ERMAP_uc001cic.1_5'Flank|ERMAP_uc001cid.1_5'Flank	NM_199342	NP_955374	Q8N300	CCD23_HUMAN	coiled-coil domain containing 23	28	Potential.										0	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				AGCTCCTGCTGGGCTGATTTC	0.468													10	202					1.99824e-07	2.59546e-06	0.000566183	1	0
TIE1	7075	broad.mit.edu	37	1	43785130	43785130	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:43785130G>C	uc001ciu.2	+	19	3116	c.3037G>C	c.(3037-3039)GGG>CGG	p.G1013R	TIE1_uc010oke.1_Missense_Mutation_p.G968R|TIE1_uc009vwq.2_Missense_Mutation_p.G969R|TIE1_uc010okg.1_Missense_Mutation_p.G658R	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	1013	Cytoplasmic (Potential).|Protein kinase.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TCTCTCCTAGGGGCGTCTCCC	0.582													4	110					0	0	3.59834e-05	0	0
PTPRF	5792	broad.mit.edu	37	1	44069168	44069168	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:44069168C>G	uc001cjr.2	+	15	2762	c.2422C>G	c.(2422-2424)CGC>GGC	p.R808G	PTPRF_uc001cjs.2_Missense_Mutation_p.R799G|PTPRF_uc001cju.2_Missense_Mutation_p.R379G|PTPRF_uc009vwt.2_Missense_Mutation_p.R370G|PTPRF_uc001cjv.2_Missense_Mutation_p.R268G|PTPRF_uc001cjw.2_Missense_Mutation_p.R34G	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	808	Fibronectin type-III 5.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GGATGGTGCCCGCAGCAAGCC	0.627													5	77					0	0	0.000602214	0	0
ERI3	79033	broad.mit.edu	37	1	44818579	44818579	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:44818579G>C	uc001clt.2	-	2	395	c.154C>G	c.(154-156)CTC>GTC	p.L52V	ERI3_uc010okv.1_5'UTR|ERI3_uc009vxg.2_Missense_Mutation_p.L52V|ERI3_uc010okw.1_Intron|ERI3_uc001clu.2_Intron	NM_024066	NP_076971	O43414	ERI3_HUMAN	prion protein interacting protein	52						intracellular	exonuclease activity|metal ion binding|nucleic acid binding			ovary(2)|large_intestine(1)	3						GGTTCTGTGAGAGCTGGAAAG	0.458													4	198					0	0	8.12818e-05	0	0
PRDX1	5052	broad.mit.edu	37	1	45981352	45981352	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:45981352C>A	uc001cnz.2	-	2	266	c.234G>T	c.(232-234)GTG>GTT	p.V78V	PRDX1_uc001coa.2_Silent_p.V78V|PRDX1_uc001cob.2_Silent_p.V78V|PRDX1_uc001coc.2_Silent_p.V78V	NM_181697	NP_859048	Q06830	PRDX1_HUMAN	peroxiredoxin 1	78	Thioredoxin.				cell proliferation|cell redox homeostasis|hydrogen peroxide catabolic process|skeletal system development	melanosome|mitochondrion|nucleus	protein binding|thioredoxin peroxidase activity				0	Acute lymphoblastic leukemia(166;0.155)					AGTGAGAATCCACAGAAGCAC	0.343													11	110					0.000978159	0.00917326	0.000978159	1	0
AKR1A1	10327	broad.mit.edu	37	1	46027497	46027497	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:46027497G>C	uc001cod.2	+	3	495	c.31G>C	c.(31-33)GGG>CGG	p.G11R	AKR1A1_uc009vxw.2_Missense_Mutation_p.G11R|AKR1A1_uc001coe.2_Missense_Mutation_p.G11R	NM_006066	NP_006057	P14550	AK1A1_HUMAN	aldo-keto reductase family 1, member A1	11					glucose metabolic process		alditol:NADP+ 1-oxidoreductase activity|electron carrier activity|protein binding				0	Acute lymphoblastic leukemia(166;0.155)					ACTGCACACTGGGCAGAAGAT	0.527													4	112					0	0	3.59834e-05	0	0
MAST2	23139	broad.mit.edu	37	1	46501170	46501170	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:46501170C>T	uc001cov.2	+	29	5112	c.4829C>T	c.(4828-4830)CCC>CTC	p.P1610L	MAST2_uc001cow.2_Missense_Mutation_p.P1609L|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	1610					regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					GCCACAGACCCCATCCCTCCT	0.632													4	65					0	0	0.00024832	0	0
POMGNT1	55624	broad.mit.edu	37	1	46662700	46662700	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:46662700C>A	uc001cpe.2	-	3	341	c.177G>T	c.(175-177)CTG>CTT	p.L59L	POMGNT1_uc010olx.1_Silent_p.L37L|POMGNT1_uc010oly.1_RNA|POMGNT1_uc010olz.1_5'UTR|POMGNT1_uc001cpg.2_Silent_p.L59L|POMGNT1_uc001cpf.2_5'UTR|POMGNT1_uc001cpj.2_Silent_p.L59L	NM_017739	NP_060209	Q8WZA1	PMGT1_HUMAN	O-linked mannose	59	Lumenal (Potential).				protein N-linked glycosylation|protein O-linked glycosylation	Golgi membrane|integral to membrane|microsome	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GCCGAGTGTCCAGGATCAACT	0.547													8	248					0.000978159	0.00917326	0.000978159	1	0
NSUN4	387338	broad.mit.edu	37	1	46827401	46827401	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:46827401G>C	uc001cpr.1	+	6	1147	c.1038G>C	c.(1036-1038)AGG>AGC	p.R346S	NSUN4_uc010omc.1_Missense_Mutation_p.R297S|NSUN4_uc009vyf.1_Missense_Mutation_p.R195S|NSUN4_uc009vyg.1_Missense_Mutation_p.R297S|NSUN4_uc001cpt.1_RNA|NSUN4_uc001cps.1_RNA	NM_199044	NP_950245	Q96CB9	NSUN4_HUMAN	NOL1/NOP2/Sun domain family 4 protein	346							methyltransferase activity				0	Acute lymphoblastic leukemia(166;0.155)					ACTTCCGAAGGGTTTTCATGG	0.473													4	141					0	0	0.000157383	0	0
CYP4A11	1579	broad.mit.edu	37	1	47398483	47398483	+	Silent	SNP	C	G	G	rs9333059	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:47398483C>G	uc001cqp.3	-	11	1365	c.1314G>C	c.(1312-1314)CCG>CCC	p.P438P	CYP4A11_uc001cqq.2_Silent_p.P438P	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	438					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	GAGCAGAACCCGGTGCAAAAC	0.542													4	246					0	0	0.000673444	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47560260	47560260	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:47560260G>A	uc001cqu.1	+	7	798	c.795G>A	c.(793-795)AAG>AAA	p.K265K		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	265	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						AGGACCGGAAGGAGTCTCTTA	0.368													6	67					0	0	0.000157383	0	0
TAL1	6886	broad.mit.edu	37	1	47685668	47685668	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:47685668G>C	uc001cqx.2	-	4	1297	c.720C>G	c.(718-720)GCC>GCG	p.A240A	TAL1_uc009vyq.2_5'UTR|TAL1_uc001cqy.2_Silent_p.A240A	NM_003189	NP_003180	P17542	TAL1_HUMAN	T-cell acute lymphocytic leukemia 1	240	Helix-loop-helix motif.				basophil differentiation|cell fate commitment|cell proliferation|embryonic hemopoiesis|erythrocyte differentiation|megakaryocyte differentiation|positive regulation of cell division|positive regulation of chromatin assembly or disassembly|positive regulation of erythrocyte differentiation|positive regulation of mitotic cell cycle|positive regulation of protein complex assembly|positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	E-box binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity			lung(1)	1						TGAGCAGCTTGGCCAAGAAGT	0.512			T	TRD@|SIL	lymphoblastic leukemia/biphasic								3	37					0	0	0.00024832	0	0
TAL1	6886	broad.mit.edu	37	1	47691495	47691495	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:47691495G>T	uc001cqx.2	-	2	643	c.66C>A	c.(64-66)GCC>GCA	p.A22A	TAL1_uc009vyq.2_5'Flank|TAL1_uc001cqy.2_Silent_p.A22A|TAL1_uc001cra.1_Intron|TAL1_uc001cqz.1_Intron	NM_003189	NP_003180	P17542	TAL1_HUMAN	T-cell acute lymphocytic leukemia 1	22					basophil differentiation|cell fate commitment|cell proliferation|embryonic hemopoiesis|erythrocyte differentiation|megakaryocyte differentiation|positive regulation of cell division|positive regulation of chromatin assembly or disassembly|positive regulation of erythrocyte differentiation|positive regulation of mitotic cell cycle|positive regulation of protein complex assembly|positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	E-box binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity			lung(1)	1						TGCTGGCCTCGGCCGCGTCCC	0.706			T	TRD@|SIL	lymphoblastic leukemia/biphasic								4	19					0.000157383	0.00173811	0.000157383	1	0
STIL	6491	broad.mit.edu	37	1	47761455	47761455	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:47761455G>C	uc001crc.1	-	7	922	c.767C>G	c.(766-768)TCT>TGT	p.S256C	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Missense_Mutation_p.S209C|STIL_uc010omo.1_Missense_Mutation_p.S256C|STIL_uc001crd.1_Missense_Mutation_p.S256C|STIL_uc001cre.1_Missense_Mutation_p.S256C|STIL_uc001crg.1_Missense_Mutation_p.S209C	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	256					cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				CAATGGTAGAGAATAAACCTT	0.318													4	95					0	0	0.00024832	0	0
SPATA6	54558	broad.mit.edu	37	1	48771468	48771468	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:48771468G>C	uc001crr.1	-	12	1442	c.1277C>G	c.(1276-1278)CCC>CGC	p.P426R	SPATA6_uc001crs.1_Missense_Mutation_p.P410R|SPATA6_uc010omv.1_Missense_Mutation_p.P412R	NM_019073	NP_061946	Q9NWH7	SPAT6_HUMAN	spermatogenesis associated 6 precursor	426					cell differentiation|multicellular organismal development|spermatogenesis	extracellular region				ovary(1)	1						CCTATACTCGGGGTCACTGTC	0.318													4	155					0	0	0.000602214	0	0
SPATA6	54558	broad.mit.edu	37	1	48865077	48865077	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:48865077C>G	uc001crr.1	-	7	891	c.726G>C	c.(724-726)CTG>CTC	p.L242L	SPATA6_uc001crs.1_Silent_p.L242L|SPATA6_uc010omv.1_Silent_p.L228L|SPATA6_uc001crt.2_Silent_p.L134L	NM_019073	NP_061946	Q9NWH7	SPAT6_HUMAN	spermatogenesis associated 6 precursor	242					cell differentiation|multicellular organismal development|spermatogenesis	extracellular region				ovary(1)	1						CATAGGGTCCCAGATTTAAAT	0.398													4	36					0	0	0.00024832	0	0
EPS15	2060	broad.mit.edu	37	1	51822432	51822432	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:51822432C>G	uc001csq.1	-	25	2723	c.2631G>C	c.(2629-2631)CAG>CAC	p.Q877H	EPS15_uc009vyz.1_Missense_Mutation_p.Q743H|EPS15_uc001csp.3_Missense_Mutation_p.Q563H	NM_001981	NP_001972	P42566	EPS15_HUMAN	epidermal growth factor receptor pathway	877	UIM 2.				cell proliferation|clathrin coat assembly|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|protein transport	cytosol|early endosome membrane	calcium ion binding|SH3 domain binding			lung(1)|kidney(1)	2						CTTCTTGTTCCTGCTGATTTA	0.418			T	MLL	ALL								4	95					0	0	0.000602214	0	0
RAB3B	5865	broad.mit.edu	37	1	52442645	52442645	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:52442645G>C	uc001cth.2	-	2	270	c.145C>G	c.(145-147)CCA>GCA	p.P49A		NM_002867	NP_002858	P20337	RAB3B_HUMAN	RAB3B, member RAS oncogene family	49					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			ovary(1)	1						ACGAAGGCTGGGGTGAACGTG	0.507													4	67					0	0	3.59834e-05	0	0
TXNDC12	51060	broad.mit.edu	37	1	52492996	52492996	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:52492996G>A	uc001cti.2	-	4	515	c.236C>T	c.(235-237)TCT>TTT	p.S79F		NM_015913	NP_056997	O95831	AIFM1_HUMAN	thioredoxin domain containing 12 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					activation of caspase activity|apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|DNA damage response, signal transduction resulting in induction of apoptosis|DNA fragmentation involved in apoptotic nuclear change	cytosol|mitochondrial inner membrane|mitochondrial intermembrane space|nucleus|perinuclear region of cytoplasm	DNA binding|electron carrier activity|flavin adenine dinucleotide binding|oxidoreductase activity|protein binding			ovary(1)	1						AATTTCCGTAGATTCTGCAAA	0.343													17	104					0	0	0.000566183	0	0
CC2D1B	200014	broad.mit.edu	37	1	52820330	52820330	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:52820330G>T	uc001ctq.1	-	23	2536	c.2398C>A	c.(2398-2400)CTG>ATG	p.L800M	CC2D1B_uc001ctr.2_Missense_Mutation_p.L340M|CC2D1B_uc001cts.2_Missense_Mutation_p.L485M	NM_032449	NP_115825	Q5T0F9	C2D1B_HUMAN	coiled-coil and C2 domain containing 1B	800										ovary(2)	2						TCCAGTTTCAGGTGTGCTGTG	0.572													7	126					0.000978159	0.00917326	0.000978159	1	0
ZYG11B	79699	broad.mit.edu	37	1	53282263	53282263	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:53282263G>C	uc001cuj.2	+	13	2201	c.2006G>C	c.(2005-2007)TGG>TCG	p.W669S	ZYG11B_uc009vzg.2_RNA|ZYG11B_uc010onj.1_Missense_Mutation_p.W590S|ZYG11B_uc009vzh.2_Missense_Mutation_p.W91S	NM_024646	NP_078922	Q9C0D3	ZY11B_HUMAN	zyg-11 homolog B	669							protein binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						GTTCAGCTATGGGCAGTTTGG	0.373													4	193					0	0	3.59834e-05	0	0
C1orf123	54987	broad.mit.edu	37	1	53682462	53682462	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:53682462G>C	uc001cvd.2	-	6	373	c.331C>G	c.(331-333)CAG>GAG	p.Q111E	C1orf123_uc001cvc.2_Missense_Mutation_p.Q49E|C1orf123_uc001cve.2_Missense_Mutation_p.Q92E	NM_017887	NP_060357	Q9NWV4	CA123_HUMAN	hypothetical protein LOC54987	111										pancreas(2)	2						ACCTGCGGCTGGAAATCAACT	0.498													4	115					0	0	0.00024832	0	0
DIO1	1733	broad.mit.edu	37	1	54370352	54370352	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:54370352G>A	uc010onx.1	+	2	374	c.351G>A	c.(349-351)CTG>CTA	p.L117L	DIO1_uc010onw.1_Silent_p.L53L|DIO1_uc009vzl.2_Intron|DIO1_uc001cwb.2_Intron|DIO1_uc010ony.1_Silent_p.L117L|DIO1_uc001cwd.2_RNA|DIO1_uc001cwe.2_Intron|DIO1_uc001cwf.2_RNA|DIO1_uc001cwg.2_RNA	NM_000792	NP_000783	P49895	IOD1_HUMAN	deiodinase, iodothyronine, type I isoform a	117					hormone biosynthetic process|thyroid hormone generation	endoplasmic reticulum membrane|integral to membrane|plasma membrane	selenium binding|thyroxine 5'-deiodinase activity				0						ATAGGCCACTGGTGCTGAATT	0.388													15	193					0	0	0.00074312	0	0
ACOT11	26027	broad.mit.edu	37	1	55059616	55059616	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:55059616G>C	uc001cxm.1	+	5	457	c.375G>C	c.(373-375)GTG>GTC	p.V125V	ACOT11_uc001cxj.1_Silent_p.V3V|ACOT11_uc001cxk.2_Silent_p.V91V|ACOT11_uc001cxl.1_Silent_p.V125V	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	125	Acyl coenzyme A hydrolase 1.				fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						CTCTCCAGGTGGGCATCCAGG	0.592													4	71					0	0	3.59834e-05	0	0
C1orf168	199920	broad.mit.edu	37	1	57257937	57257937	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:57257937C>T	uc001cym.3	-	2	955	c.549G>A	c.(547-549)AGG>AGA	p.R183R	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Silent_p.R183R	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	183										ovary(3)|skin(2)	5						CCAGCTTTTTCCTGGGTTCCT	0.478													9	99					0	0	0.000274275	0	0
DAB1	1600	broad.mit.edu	37	1	57476411	57476411	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:57476411C>G	uc001cys.1	-	16	2299	c.1625G>C	c.(1624-1626)GGG>GCG	p.G542A	DAB1_uc001cyt.1_Missense_Mutation_p.G540A|DAB1_uc001cyq.1_Missense_Mutation_p.G540A|DAB1_uc001cyr.1_Missense_Mutation_p.G456A|DAB1_uc009vzw.1_Missense_Mutation_p.G524A|DAB1_uc009vzx.1_Missense_Mutation_p.G542A	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	575					cell differentiation|nervous system development					skin(2)|ovary(1)	3						ACTGGGCTCCCCACTGGGCTC	0.448													4	100					0	0	0.000157383	0	0
FGGY	55277	broad.mit.edu	37	1	60223646	60223647	+	Missense_Mutation	DNP	CG	AT	AT	rs150176744		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:60223646_60223647CG>AT	uc001czi.3	+	15	1768_1769	c.1556_1557CG>AT	c.(1555-1557)CCG>CAT	p.P519H	FGGY_uc009wac.2_Missense_Mutation_p.P543H|FGGY_uc001czj.3_Missense_Mutation_p.P518H|FGGY_uc001czk.3_Missense_Mutation_p.P407H|FGGY_uc001czl.3_Missense_Mutation_p.P431H|FGGY_uc001czm.3_Missense_Mutation_p.P220H	NM_018291	NP_060761	Q96C11	FGGY_HUMAN	FGGY carbohydrate kinase domain containing	519					carbohydrate metabolic process|cell death|neuron homeostasis		kinase activity|phosphotransferase activity, alcohol group as acceptor			ovary(1)	1	all_cancers(7;7.36e-05)					GTTGTGTTCCCGAGACTACAGG	0.356													4	63					0	0	6.4e-05	0	0
INADL	10207	broad.mit.edu	37	1	62299334	62299334	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:62299334C>A	uc001dab.2	+	17	2103	c.1989C>A	c.(1987-1989)CAC>CAA	p.H663Q	INADL_uc009waf.1_Missense_Mutation_p.H663Q|INADL_uc001daa.2_Missense_Mutation_p.H663Q|INADL_uc001dad.3_Missense_Mutation_p.H360Q|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	663					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						AGGTTGACCACAATATGGATG	0.368													6	59					0.000157383	0.00173811	0.000157383	1	0
KANK4	163782	broad.mit.edu	37	1	62737248	62737248	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:62737248C>A	uc001dah.3	-	4	2291	c.1914G>T	c.(1912-1914)TCG>TCT	p.S638S	KANK4_uc001dai.3_Silent_p.S10S|KANK4_uc001dag.3_5'UTR	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	638										ovary(3)|skin(2)|lung(1)	6						TAAGGCTGGTCGATGGGGAGA	0.458													5	53					8.12818e-05	0.000938396	8.12818e-05	1	0
EFCAB7	84455	broad.mit.edu	37	1	64027467	64027467	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:64027467C>G	uc001dbf.2	+	11	1730	c.1436C>G	c.(1435-1437)CCT>CGT	p.P479R		NM_032437	NP_115813	A8K855	EFCB7_HUMAN	EF-hand calcium binding domain 7	479							calcium ion binding				0						GAAGGAGATCCTTGTGACCTT	0.358													3	58					0	0	6.4e-05	0	0
CACHD1	57685	broad.mit.edu	37	1	65145412	65145412	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:65145412C>T	uc001dbo.1	+	24	3331	c.3226C>T	c.(3226-3228)CAG>TAG	p.Q1076*	CACHD1_uc001dbp.1_Nonsense_Mutation_p.Q831*|CACHD1_uc001dbq.1_Nonsense_Mutation_p.Q831*|CACHD1_uc010opa.1_Nonsense_Mutation_p.Q320*	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	1127	Cytoplasmic (Potential).				calcium ion transport	integral to membrane				ovary(2)	2						CCGGAGCCATCAGCATATGTC	0.597													6	45					0	0	8.12818e-05	0	0
LEPR	3953	broad.mit.edu	37	1	66075673	66075673	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:66075673C>G	uc001dci.2	+	13	1998	c.1796C>G	c.(1795-1797)CCA>CGA	p.P599R	LEPR_uc001dcg.2_Missense_Mutation_p.P599R|LEPR_uc001dch.2_Missense_Mutation_p.P599R|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Missense_Mutation_p.P599R|LEPR_uc001dck.2_Missense_Mutation_p.P599R	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	599	Extracellular (Potential).|Fibronectin type-III 2.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		GTCAGTCTCCCAGTTCCAGAC	0.403													6	201					0	0	0.000157383	0	0
IL23R	149233	broad.mit.edu	37	1	67635238	67635238	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:67635238C>A	uc001ddo.2	+	3	369	c.284C>A	c.(283-285)CCA>CAA	p.P95Q	IL23R_uc009waz.2_5'UTR|IL23R_uc001ddp.2_RNA|IL23R_uc010opi.1_RNA|IL23R_uc010opj.1_5'UTR|IL23R_uc010opk.1_Missense_Mutation_p.P52Q|IL23R_uc010opl.1_5'UTR|IL23R_uc010opm.1_RNA|IL23R_uc001ddq.2_5'UTR|IL23R_uc010opn.1_5'UTR|IL23R_uc001ddr.2_RNA	NM_144701	NP_653302	Q5VWK5	IL23R_HUMAN	interleukin 23 receptor precursor	95	Extracellular (Potential).				inflammatory response|negative regulation of interleukin-10 production|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of interleukin-12 production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|response to interferon-gamma|response to lipopolysaccharide	interleukin-23 receptor complex	receptor activity				0						TTTCTGGAACCACATGCTTCT	0.358													7	155					0.000673444	0.00655963	0.000673444	1	0
SERBP1	26135	broad.mit.edu	37	1	67885834	67885835	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:67885834_67885835GG>TT	uc001ddv.2	-	6	993_994	c.853_854CC>AA	c.(853-855)CCA>AAA	p.P285K	SERBP1_uc001ddx.2_Missense_Mutation_p.P279K|SERBP1_uc001ddy.2_Missense_Mutation_p.P264K|SERBP1_uc001ddw.2_Missense_Mutation_p.P270K	NM_001018067	NP_001018077	Q8NC51	PAIRB_HUMAN	SERPINE1 mRNA binding protein 1 isoform 1	285					regulation of mRNA stability	nucleus|perinuclear region of cytoplasm	mRNA 3'-UTR binding|protein binding			skin(1)	1						CATCTCTTTTGGACCCTCCTCT	0.371													8	219					0	0	6.4e-05	0	0
LRRC7	57554	broad.mit.edu	37	1	70503849	70503849	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:70503849G>C	uc001dep.2	+	19	2258	c.2228G>C	c.(2227-2229)CGG>CCG	p.R743P	LRRC7_uc009wbg.2_Missense_Mutation_p.R27P|LRRC7_uc001deq.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	743						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						CTCAGCCAGCGGGAGGCTGTT	0.502													4	102					0	0	0.00024832	0	0
LHX8	431707	broad.mit.edu	37	1	75609546	75609546	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:75609546G>A	uc001dgo.2	+	7	1291	c.627G>A	c.(625-627)GTG>GTA	p.V209V	LHX8_uc001dgq.2_Silent_p.V148V	NM_001001933	NP_001001933	Q68G74	LHX8_HUMAN	LIM homeobox 8	209						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						GGATTAGTGTGGAAGGTGCCC	0.408													9	47					0	0	0.000442599	0	0
SLC44A5	204962	broad.mit.edu	37	1	75685015	75685015	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:75685015G>A	uc001dgu.2	-	16	1337	c.1193C>T	c.(1192-1194)TCG>TTG	p.S398L	SLC44A5_uc001dgt.2_Missense_Mutation_p.S398L|SLC44A5_uc001dgs.2_Missense_Mutation_p.S356L|SLC44A5_uc001dgr.2_Missense_Mutation_p.S356L|SLC44A5_uc010oqz.1_Missense_Mutation_p.S437L|SLC44A5_uc010ora.1_Missense_Mutation_p.S392L|SLC44A5_uc010orb.1_Missense_Mutation_p.S268L	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	398	Cytoplasmic (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						AGGTACCCCCGATGTCGCCAA	0.388													12	41					0	0	0.000151284	0	0
MSH4	4438	broad.mit.edu	37	1	76333261	76333261	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:76333261G>T	uc001dhd.1	+	9	1334	c.1293G>T	c.(1291-1293)GTG>GTT	p.V431V		NM_002440	NP_002431	O15457	MSH4_HUMAN	mutS homolog 4	431					chiasma assembly|homologous chromosome segregation|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			lung(3)|ovary(2)	5						TGGAACTTGTGGATCCTTTAA	0.249								MMR					6	102					0.000673444	0.00655963	0.000673444	1	0
PIGK	10026	broad.mit.edu	37	1	77627362	77627362	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:77627362G>T	uc001dhk.2	-	7	664	c.619C>A	c.(619-621)CAA>AAA	p.Q207K	PIGK_uc010orj.1_Missense_Mutation_p.Q131K|PIGK_uc009wbx.2_Missense_Mutation_p.Q113K|PIGK_uc001dhl.1_Missense_Mutation_p.Q207K	NM_005482	NP_005473	Q92643	GPI8_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	207	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|protein thiol-disulfide exchange|proteolysis	GPI-anchor transamidase complex	cysteine-type endopeptidase activity|GPI-anchor transamidase activity|protein binding			ovary(2)|pancreas(1)	3						GATGCTCCTTGGCAAGTATCA	0.363													6	89					0.000157383	0.00173811	0.000157383	1	0
USP33	23032	broad.mit.edu	37	1	78204952	78204952	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:78204952G>C	uc001dht.2	-	6	789	c.442C>G	c.(442-444)CAG>GAG	p.Q148E	USP33_uc001dhu.2_Missense_Mutation_p.Q117E|USP33_uc001dhv.2_5'UTR|USP33_uc001dhw.2_Missense_Mutation_p.Q148E	NM_015017	NP_055832	Q8TEY7	UBP33_HUMAN	ubiquitin specific protease 33 isoform 1	148					axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|VCB complex	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(2)|ovary(1)	3						ATTATTACCTGGACACTGTTT	0.348													5	182					0	0	0.000274275	0	0
NEXN	91624	broad.mit.edu	37	1	78383855	78383855	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:78383855A>G	uc001dic.3	+	5	641	c.344A>G	c.(343-345)GAG>GGG	p.E115G	NEXN_uc001dia.3_Missense_Mutation_p.E115G|NEXN_uc009wcb.1_Missense_Mutation_p.E51G|NEXN_uc001dib.3_Missense_Mutation_p.E51G|NEXN_uc001did.1_Missense_Mutation_p.E39G|NEXN_uc001dif.1_Missense_Mutation_p.E7G	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)	115	Glu-rich.				regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		CAAAGACAAGAGGAACAAAGG	0.353													6	130					0	0	3.59834e-05	0	0
NEXN	91624	broad.mit.edu	37	1	78392511	78392511	+	Silent	SNP	T	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:78392511T>A	uc001dic.3	+	8	1095	c.798T>A	c.(796-798)GCT>GCA	p.A266A	NEXN_uc001dia.3_Silent_p.A252A|NEXN_uc009wcb.1_Silent_p.A188A|NEXN_uc001dib.3_Silent_p.A202A|NEXN_uc001did.1_Silent_p.A176A|NEXN_uc001dif.1_Silent_p.A158A	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)	266	Glu-rich.				regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		AGAAGCAAGCTGAAGAGGAAG	0.358													13	173					0	0	0.000219431	0	0
CTBS	1486	broad.mit.edu	37	1	85029450	85029450	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:85029450C>A	uc001dka.2	-	5	828	c.763G>T	c.(763-765)GGT>TGT	p.G255C	SPATA1_uc001djz.1_Intron|CTBS_uc001dkc.2_Missense_Mutation_p.G164C|CTBS_uc001dkd.2_Missense_Mutation_p.G49C|CTBS_uc001dkb.2_Missense_Mutation_p.G49C	NM_004388	NP_004379	Q01459	DIAC_HUMAN	chitobiase, di-N-acetyl- precursor	255						lysosome	cation binding				0				all cancers(265;0.00727)|Epithelial(280;0.0192)|OV - Ovarian serous cystadenocarcinoma(397;0.166)		TAATCATAACCATACCAAGGA	0.318													8	220					0.000673444	0.00655963	0.000673444	1	0
SSX2IP	117178	broad.mit.edu	37	1	85116180	85116180	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:85116180G>T	uc001dkh.2	-	14	1810	c.1535C>A	c.(1534-1536)TCG>TAG	p.S512*	SSX2IP_uc001dkf.2_Nonsense_Mutation_p.S484*|SSX2IP_uc001dkg.2_RNA|SSX2IP_uc010orz.1_Nonsense_Mutation_p.S485*|SSX2IP_uc001dki.2_Nonsense_Mutation_p.S512*|SSX2IP_uc010osa.1_Nonsense_Mutation_p.S485*|SSX2IP_uc001dkj.2_Nonsense_Mutation_p.S512*|SSX2IP_uc009wci.2_Nonsense_Mutation_p.S31*	NM_014021	NP_054740	Q9Y2D8	ADIP_HUMAN	synovial sarcoma, X breakpoint 2 interacting	512					cell adhesion	nucleus|protein complex				ovary(2)	2				all cancers(265;0.0053)|Epithelial(280;0.0214)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		CGGCTGCCTCGAGTGCACTAT	0.413													6	247					0.000978159	0.00917326	0.000978159	1	0
GBP3	2635	broad.mit.edu	37	1	89476603	89476603	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:89476603G>T	uc001dmt.2	-	8	1551	c.1346C>A	c.(1345-1347)CCA>CAA	p.P449Q	GBP3_uc010oss.1_Missense_Mutation_p.P370Q|GBP3_uc001dmu.2_Missense_Mutation_p.P315Q|GBP3_uc001dmv.2_Intron	NM_018284	NP_060754	Q9H0R5	GBP3_HUMAN	guanylate binding protein 3	449						integral to membrane	GTP binding|GTPase activity			ovary(1)|pancreas(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0103)|Epithelial(280;0.0293)		CCCCTTCCTTGGTTCCTCATA	0.448													6	84					3.09899e-07	4.00456e-06	0.000274275	1	0
LRRC8D	55144	broad.mit.edu	37	1	90400872	90400872	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:90400872G>A	uc001dnm.2	+	3	2670	c.2245G>A	c.(2245-2247)GGA>AGA	p.G749R	LRRC8D_uc001dnn.2_Missense_Mutation_p.G749R	NM_001134479	NP_001127951	Q7L1W4	LRC8D_HUMAN	leucine rich repeat containing 8 family, member	749	LRR 10.					integral to membrane	protein binding			ovary(2)	2		all_lung(203;0.0894)|Lung NSC(277;0.227)		all cancers(265;0.0109)|Epithelial(280;0.0427)		AATAGAAATAGGATTGCTTCA	0.373													11	98					0	0	0.00010058	0	0
BRDT	676	broad.mit.edu	37	1	92479769	92479769	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:92479769G>C	uc001dok.3	+	19	3131	c.2782G>C	c.(2782-2784)GGT>CGT	p.G928R	BRDT_uc001dol.3_Missense_Mutation_p.G928R|BRDT_uc010osz.1_Missense_Mutation_p.G932R|BRDT_uc009wdf.2_Missense_Mutation_p.G855R|BRDT_uc010ota.1_Missense_Mutation_p.G882R|BRDT_uc010otb.1_Missense_Mutation_p.G882R|BRDT_uc001dom.3_Missense_Mutation_p.G928R	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	928					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		ACAGATGGTGGGTACCATTGA	0.259													5	127					0	0	8.12818e-05	0	0
DNTTIP2	30836	broad.mit.edu	37	1	94342882	94342882	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:94342882G>C	uc001dqf.2	-	2	647	c.609C>G	c.(607-609)ACC>ACG	p.T203T	DNTTIP2_uc010otm.1_RNA|DNTTIP2_uc009wdo.1_5'UTR	NM_014597	NP_055412	Q5QJE6	TDIF2_HUMAN	deoxynucleotidyltransferase, terminal,	203					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_lung(203;0.0111)|Lung NSC(277;0.0347)		all cancers(265;0.00679)|GBM - Glioblastoma multiforme(16;0.0278)|Epithelial(280;0.128)		GCATACTCCTGGTTCTTCTAG	0.403													8	338					0	0	0.000151284	0	0
PTBP2	58155	broad.mit.edu	37	1	97243470	97243470	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:97243470G>C	uc001drq.2	+	7	922	c.676G>C	c.(676-678)GGT>CGT	p.G226R	PTBP2_uc001drn.2_Missense_Mutation_p.G226R|PTBP2_uc001dro.2_Missense_Mutation_p.G226R|PTBP2_uc010otz.1_Missense_Mutation_p.G237R|PTBP2_uc001drp.2_RNA|PTBP2_uc009wdw.2_Missense_Mutation_p.G174R|PTBP2_uc001drr.2_Missense_Mutation_p.G226R|PTBP2_uc010oua.1_Missense_Mutation_p.G234R|PTBP2_uc001dru.2_RNA	NM_021190	NP_067013	Q9UKA9	PTBP2_HUMAN	polypyrimidine tract binding protein 2	226	RRM 2.						nucleotide binding				0		all_epithelial(167;2.95e-05)|all_lung(203;0.000396)|Lung NSC(277;0.00171)		all cancers(265;0.0582)|Epithelial(280;0.0716)|Colorectal(170;0.0879)|KIRC - Kidney renal clear cell carcinoma(1967;0.202)		GCTCCAGTATGGTGATCCAGT	0.249													4	159					0	0	3.59834e-05	0	0
AGL	178	broad.mit.edu	37	1	100345580	100345580	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:100345580G>T	uc001dsi.1	+	13	2113	c.1713G>T	c.(1711-1713)CTG>CTT	p.L571L	AGL_uc001dsj.1_Silent_p.L571L|AGL_uc001dsk.1_Silent_p.L571L|AGL_uc001dsl.1_Silent_p.L571L|AGL_uc001dsm.1_Silent_p.L555L|AGL_uc001dsn.1_Silent_p.L554L	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	571	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		TTACTAGACTGGGCATTAGTT	0.358													8	132					0.000978159	0.00917326	0.000978159	1	0
LRRC39	127495	broad.mit.edu	37	1	100620637	100620637	+	Missense_Mutation	SNP	G	T	T	rs147649568		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:100620637G>T	uc001dsw.1	-	8	981	c.782C>A	c.(781-783)CCA>CAA	p.P261Q	LRRC39_uc001dsx.1_Missense_Mutation_p.P261Q|LRRC39_uc001dsy.1_Missense_Mutation_p.P261Q|LRRC39_uc001dsz.1_Missense_Mutation_p.P261Q	NM_144620	NP_653221	Q96DD0	LRC39_HUMAN	leucine rich repeat containing 39	261	LRR 8.									ovary(2)|skin(1)	3		all_epithelial(167;0.000542)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.0826)|all cancers(265;0.135)|COAD - Colon adenocarcinoma(174;0.148)|Lung(183;0.195)		CATGCATACTGGAATATCTTG	0.373													9	155					5.50884e-06	6.81381e-05	0.00010058	1	0
AMY2B	280	broad.mit.edu	37	1	104118116	104118116	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:104118116G>C	uc001duq.2	+	9	1671	c.1055G>C	c.(1054-1056)CGA>CCA	p.R352P	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Missense_Mutation_p.R352P|AMY2B_uc001dus.1_RNA	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	352		Chloride (By similarity).			carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		GGTTTTACACGAGTAATGTCA	0.333													6	299					0	0	0.000274275	0	0
AMY2A	279	broad.mit.edu	37	1	104162284	104162284	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:104162284G>C	uc001dut.2	+	4	686	c.622G>C	c.(622-624)GGG>CGG	p.G208R	AMY2A_uc010ouq.1_Missense_Mutation_p.G208R	NM_000699	NP_000690	P04746	AMYP_HUMAN	pancreatic amylase alpha 2A precursor	208					carbohydrate catabolic process|polysaccharide digestion	extracellular space	alpha-amylase activity|calcium ion binding|chloride ion binding			ovary(1)|skin(1)	2		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0654)|all cancers(265;0.0808)|Epithelial(280;0.0921)|Lung(183;0.111)	Acarbose(DB00284)|Bentiromide(DB00522)|Icodextrin(DB00702)|Miglitol(DB00491)|Pancrelipase(DB00085)	TGGTGTTGCAGGGTTCAGACT	0.443													6	295					0	0	0.000151284	0	0
FNDC7	163479	broad.mit.edu	37	1	109273399	109273399	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109273399G>T	uc001dvx.2	+	9	1728	c.1728G>T	c.(1726-1728)CTG>CTT	p.L576L	FNDC7_uc010ova.1_Silent_p.L343L	NM_001144937	NP_001138409	Q5VTL7	FNDC7_HUMAN	fibronectin type III domain containing 7	577	Fibronectin type-III 7.					extracellular region				ovary(1)|skin(1)	2		all_lung(203;0.00439)|Lung NSC(277;0.00683)|all_epithelial(167;0.00728)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.173)|all cancers(265;0.244)		TTGCAGTTCTGGAGTCACACA	0.468													6	94					0.000978159	0.00917326	0.000978159	1	0
AKNAD1	254268	broad.mit.edu	37	1	109358897	109358897	+	Missense_Mutation	SNP	G	T	T	rs113299899	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109358897G>T	uc001dwa.2	-	16	2676	c.2407C>A	c.(2407-2409)CTA>ATA	p.L803I	AKNAD1_uc001dwb.2_RNA	NM_152763	NP_689976	Q5T1N1	AKND1_HUMAN	hypothetical protein LOC254268	803										ovary(3)	3						GCTGTCCTTAGGGCATGATCC	0.373													10	214					0.000978159	0.00917326	0.000978159	1	0
GPSM2	29899	broad.mit.edu	37	1	109428193	109428194	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109428193_109428194CG>AT	uc010ovc.1	+	2	545_546	c.49_50CG>AT	c.(49-51)CGT>ATT	p.R17I	AKNAD1_uc010ovb.1_Intron|GPSM2_uc010ovd.1_Missense_Mutation_p.R17I|GPSM2_uc010ove.1_Missense_Mutation_p.R17I	NM_013296	NP_037428	P81274	GPSM2_HUMAN	LGN protein	17					G-protein coupled receptor protein signaling pathway	cell cortex|nucleus	GTPase activator activity|identical protein binding			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0353)|Lung(183;0.0984)|COAD - Colon adenocarcinoma(174;0.129)|Epithelial(280;0.175)|all cancers(265;0.209)		TTTTCATGTTCGTTACAGGTAA	0.292													8	605					0	0	6.4e-05	0	0
GPSM2	29899	broad.mit.edu	37	1	109440160	109440160	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109440160G>T	uc010ovc.1	+	4	821	c.325G>T	c.(325-327)GGA>TGA	p.G109*	AKNAD1_uc010ovb.1_Intron|GPSM2_uc010ovd.1_Nonsense_Mutation_p.G109*|GPSM2_uc010ove.1_Nonsense_Mutation_p.G109*	NM_013296	NP_037428	P81274	GPSM2_HUMAN	LGN protein	109	TPR 3.				G-protein coupled receptor protein signaling pathway	cell cortex|nucleus	GTPase activator activity|identical protein binding			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0353)|Lung(183;0.0984)|COAD - Colon adenocarcinoma(174;0.129)|Epithelial(280;0.175)|all cancers(265;0.209)		TGGTAATCTGGGAAACACCTT	0.353													9	299					5.50884e-06	6.81381e-05	0.00010058	1	0
GPSM2	29899	broad.mit.edu	37	1	109461363	109461363	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109461363C>G	uc010ovc.1	+	12	1888	c.1392C>G	c.(1390-1392)CTC>CTG	p.L464L	AKNAD1_uc010ovb.1_Intron|GPSM2_uc010ovd.1_Silent_p.L464L|GPSM2_uc010ove.1_Silent_p.L464L	NM_013296	NP_037428	P81274	GPSM2_HUMAN	LGN protein	464					G-protein coupled receptor protein signaling pathway	cell cortex|nucleus	GTPase activator activity|identical protein binding			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0353)|Lung(183;0.0984)|COAD - Colon adenocarcinoma(174;0.129)|Epithelial(280;0.175)|all cancers(265;0.209)		CTAAAGTTCTCCAAGATGCCA	0.383													5	313					0	0	8.12818e-05	0	0
GPSM2	29899	broad.mit.edu	37	1	109466653	109466653	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109466653G>C	uc010ovc.1	+	14	2128	c.1632G>C	c.(1630-1632)ACG>ACC	p.T544T	AKNAD1_uc010ovb.1_Intron|GPSM2_uc010ovd.1_Silent_p.T544T|GPSM2_uc010ove.1_Silent_p.T544T	NM_013296	NP_037428	P81274	GPSM2_HUMAN	LGN protein	544	GoLoco 2.				G-protein coupled receptor protein signaling pathway	cell cortex|nucleus	GTPase activator activity|identical protein binding			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0353)|Lung(183;0.0984)|COAD - Colon adenocarcinoma(174;0.129)|Epithelial(280;0.175)|all cancers(265;0.209)		CCCCCAACACGGATGAGTTTT	0.398													6	323					0	0	0.000274275	0	0
CLCC1	23155	broad.mit.edu	37	1	109493021	109493021	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109493021C>G	uc001dwe.1	-	2	131	c.39G>C	c.(37-39)CTG>CTC	p.L13L	AKNAD1_uc010ovb.1_Intron|CLCC1_uc001dwf.1_Silent_p.L13L|CLCC1_uc001dwg.1_Silent_p.L13L|CLCC1_uc009wes.1_Silent_p.L13L|CLCC1_uc009wet.1_Silent_p.L13L|CLCC1_uc001dwh.1_Silent_p.L13L	NM_001048210	NP_001041675	Q96S66	CLCC1_HUMAN	Mid-1-related chloride channel 1 isoform 1	13						endoplasmic reticulum|Golgi apparatus|integral to membrane|nucleus				liver(1)	1		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.231)		AACCAGCTACCAGCAACAGAC	0.318													4	260					0	0	3.59834e-05	0	0
WDR47	22911	broad.mit.edu	37	1	109517217	109517218	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109517217_109517218CC>AA	uc001dwj.2	-	14	2933_2934	c.2557_2558GG>TT	c.(2557-2559)GGA>TTA	p.G853L	WDR47_uc001dwl.2_Missense_Mutation_p.G861L|WDR47_uc001dwi.2_Missense_Mutation_p.G854L|WDR47_uc010ovf.1_Missense_Mutation_p.G778L	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	853	WD 6.									ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		GTAGTGAGCTCCAGGGGAGAAT	0.411													9	399					0	0	6.4e-05	0	0
WDR47	22911	broad.mit.edu	37	1	109553612	109553613	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109553612_109553613CC>AG	uc001dwj.2	-	5	1431_1432	c.1055_1056GG>CT	c.(1054-1056)GGG>GCT	p.G352A	WDR47_uc001dwl.2_Missense_Mutation_p.G359A|WDR47_uc001dwi.2_Missense_Mutation_p.G352A|WDR47_uc001dwk.2_Missense_Mutation_p.G324A|WDR47_uc010ovf.1_Missense_Mutation_p.G279A	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	352										ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		GGTTTTGTACCCCTGGATAATG	0.411													13	408					0	0	6.4e-05	0	0
WDR47	22911	broad.mit.edu	37	1	109554006	109554006	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109554006G>T	uc001dwj.2	-	5	1038	c.662C>A	c.(661-663)ACA>AAA	p.T221K	WDR47_uc001dwl.2_Missense_Mutation_p.T228K|WDR47_uc001dwi.2_Missense_Mutation_p.T221K|WDR47_uc001dwk.2_Missense_Mutation_p.T193K|WDR47_uc010ovf.1_Missense_Mutation_p.T148K	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	221										ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		TTCGCTTTCTGTAATTTCTTC	0.388													8	573					0.000422831	0.00445499	0.000422831	1	0
WDR47	22911	broad.mit.edu	37	1	109554217	109554218	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109554217_109554218CG>AT	uc001dwj.2	-	5	826_827	c.450_451CG>AT	c.(448-453)GCCGAG>GCATAG	p.E151*	WDR47_uc001dwl.2_Nonsense_Mutation_p.E158*|WDR47_uc001dwi.2_Nonsense_Mutation_p.E151*|WDR47_uc001dwk.2_Nonsense_Mutation_p.E123*|WDR47_uc010ovf.1_Nonsense_Mutation_p.E78*	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	151										ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		TCCTTAAACTCGGCATGATTGG	0.441													15	435					0	0	6.4e-05	0	0
KIAA1324	57535	broad.mit.edu	37	1	109742824	109742824	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109742824C>G	uc001dwq.2	+	21	2908	c.2772C>G	c.(2770-2772)ACC>ACG	p.T924T	KIAA1324_uc009wex.1_Silent_p.T874T|KIAA1324_uc009wey.2_Silent_p.T837T|KIAA1324_uc010ovg.1_Silent_p.T822T|KIAA1324_uc001dwr.2_Silent_p.T574T|KIAA1324_uc001dws.1_RNA|KIAA1324_uc009wez.1_RNA	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	924	Helical; (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		TCCTGCTCACCGTCTTGACCT	0.473													5	280					0	0	3.59834e-05	0	0
SARS	6301	broad.mit.edu	37	1	109772101	109772101	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109772101C>A	uc001dwu.1	+	4	429	c.354C>A	c.(352-354)GAC>GAA	p.D118E	SARS_uc001dwt.1_Missense_Mutation_p.D118E|SARS_uc001dwv.1_Missense_Mutation_p.D118E|SARS_uc001dww.1_Missense_Mutation_p.D51E|SARS_uc001dwx.1_Missense_Mutation_p.D118E|SARS_uc009wfa.1_Missense_Mutation_p.D118E|SARS_uc001dwy.1_5'UTR|SARS_uc001dwz.1_5'UTR	NM_006513	NP_006504	P49591	SYSC_HUMAN	seryl-tRNA synthetase	118					seryl-tRNA aminoacylation|tRNA processing	cytosol	ATP binding|protein binding|RNA binding|serine-tRNA ligase activity			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0301)|Lung(183;0.0677)|COAD - Colon adenocarcinoma(174;0.116)|Epithelial(280;0.233)	L-Serine(DB00133)	TGAAGTGTGACGCGGAGCGGA	0.502													6	348					0.000157383	0.00173811	0.000157383	1	0
SARS	6301	broad.mit.edu	37	1	109772144	109772144	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109772144C>G	uc001dwu.1	+	4	472	c.397C>G	c.(397-399)CGA>GGA	p.R133G	SARS_uc001dwt.1_Missense_Mutation_p.R133G|SARS_uc001dwv.1_Missense_Mutation_p.R133G|SARS_uc001dww.1_Missense_Mutation_p.R66G|SARS_uc001dwx.1_Missense_Mutation_p.R133G|SARS_uc009wfa.1_Missense_Mutation_p.R133G|SARS_uc001dwy.1_5'UTR|SARS_uc001dwz.1_5'UTR	NM_006513	NP_006504	P49591	SYSC_HUMAN	seryl-tRNA synthetase	133					seryl-tRNA aminoacylation|tRNA processing	cytosol	ATP binding|protein binding|RNA binding|serine-tRNA ligase activity			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0301)|Lung(183;0.0677)|COAD - Colon adenocarcinoma(174;0.116)|Epithelial(280;0.233)	L-Serine(DB00133)	TGAGAACCTCCGAGAGATTGG	0.527													5	276					0	0	0.000602214	0	0
SARS	6301	broad.mit.edu	37	1	109777926	109777927	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109777926_109777927GG>TT	uc001dwu.1	+	7	917_918	c.842_843GG>TT	c.(841-843)CGG>CTT	p.R281L	SARS_uc001dwt.1_Missense_Mutation_p.R281L|SARS_uc001dwv.1_Missense_Mutation_p.R281L|SARS_uc001dww.1_Missense_Mutation_p.R214L|SARS_uc001dwx.1_Missense_Mutation_p.R233L|SARS_uc009wfa.1_Missense_Mutation_p.R281L|SARS_uc001dwy.1_Missense_Mutation_p.R106L|SARS_uc001dwz.1_Missense_Mutation_p.R106L	NM_006513	NP_006504	P49591	SYSC_HUMAN	seryl-tRNA synthetase	281					seryl-tRNA aminoacylation|tRNA processing	cytosol	ATP binding|protein binding|RNA binding|serine-tRNA ligase activity			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0301)|Lung(183;0.0677)|COAD - Colon adenocarcinoma(174;0.116)|Epithelial(280;0.233)	L-Serine(DB00133)	GCCCTGCACCGGGATGAGTGGC	0.589													13	301					0	0	6.4e-05	0	0
SARS	6301	broad.mit.edu	37	1	109779064	109779064	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109779064C>T	uc001dwu.1	+	9	1226	c.1151C>T	c.(1150-1152)CCG>CTG	p.P384L	SARS_uc001dwv.1_Missense_Mutation_p.P384L|SARS_uc001dww.1_Missense_Mutation_p.P317L|SARS_uc001dwx.1_Missense_Mutation_p.P336L|SARS_uc009wfa.1_Intron|SARS_uc001dwy.1_Missense_Mutation_p.P209L|SARS_uc001dwz.1_Missense_Mutation_p.P209L	NM_006513	NP_006504	P49591	SYSC_HUMAN	seryl-tRNA synthetase	384					seryl-tRNA aminoacylation|tRNA processing	cytosol	ATP binding|protein binding|RNA binding|serine-tRNA ligase activity			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0301)|Lung(183;0.0677)|COAD - Colon adenocarcinoma(174;0.116)|Epithelial(280;0.233)	L-Serine(DB00133)	GCCTGGTTTCCGGGCTCAGGA	0.498													7	292					0	0	0.000274275	0	0
CELSR2	1952	broad.mit.edu	37	1	109792765	109792765	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109792765C>T	uc001dxa.3	+	1	125	c.64C>T	c.(64-66)CTG>TTG	p.L22L		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	22					dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		gctgctgttgctgctgctgct	0.562													7	119					0	0	8.12818e-05	0	0
SORT1	6272	broad.mit.edu	37	1	109859562	109859562	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109859562C>A	uc001dxm.1	-	17	2209	c.2160G>T	c.(2158-2160)GGG>GGT	p.G720G	SORT1_uc010ovi.1_Silent_p.G583G	NM_002959	NP_002950	Q99523	SORT_HUMAN	sortilin 1 preproprotein	720	Interactions with LRPAP1 and NGFB.|Extracellular (Potential).				endocytosis|endosome to lysosome transport|endosome transport via multivesicular body sorting pathway|glucose import|Golgi to endosome transport|induction of apoptosis by extracellular signals|myotube differentiation|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|neuropeptide signaling pathway|ossification|plasma membrane to endosome transport|regulation of gene expression|response to insulin stimulus|vesicle organization	cell surface|coated pit|early endosome|endoplasmic reticulum membrane|endosome membrane|Golgi cisterna membrane|integral to membrane|lysosomal membrane|microsome|nuclear membrane|perinuclear region of cytoplasm|plasma membrane	enzyme binding|nerve growth factor binding|nerve growth factor receptor activity|neurotensin receptor activity, non-G-protein coupled			ovary(1)	1		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0529)|Colorectal(144;0.142)|Epithelial(280;0.145)|Kidney(133;0.169)|all cancers(265;0.184)		GGCATTTGTCCCCTGGAATTT	0.403													11	270					0.000422831	0.00445499	0.000422831	1	0
SORT1	6272	broad.mit.edu	37	1	109869665	109869665	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109869665C>G	uc001dxm.1	-	13	1641	c.1592G>C	c.(1591-1593)GGA>GCA	p.G531A	SORT1_uc010ovi.1_Missense_Mutation_p.G394A	NM_002959	NP_002950	Q99523	SORT_HUMAN	sortilin 1 preproprotein	531	Extracellular (Potential).				endocytosis|endosome to lysosome transport|endosome transport via multivesicular body sorting pathway|glucose import|Golgi to endosome transport|induction of apoptosis by extracellular signals|myotube differentiation|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|neuropeptide signaling pathway|ossification|plasma membrane to endosome transport|regulation of gene expression|response to insulin stimulus|vesicle organization	cell surface|coated pit|early endosome|endoplasmic reticulum membrane|endosome membrane|Golgi cisterna membrane|integral to membrane|lysosomal membrane|microsome|nuclear membrane|perinuclear region of cytoplasm|plasma membrane	enzyme binding|nerve growth factor binding|nerve growth factor receptor activity|neurotensin receptor activity, non-G-protein coupled			ovary(1)	1		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0529)|Colorectal(144;0.142)|Epithelial(280;0.145)|Kidney(133;0.169)|all cancers(265;0.184)		AATGATGCCTCCAGAATCCAG	0.483													4	247					0	0	3.59834e-05	0	0
SORT1	6272	broad.mit.edu	37	1	109869673	109869673	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:109869673C>G	uc001dxm.1	-	13	1633	c.1584G>C	c.(1582-1584)CTG>CTC	p.L528L	SORT1_uc010ovi.1_Silent_p.L391L	NM_002959	NP_002950	Q99523	SORT_HUMAN	sortilin 1 preproprotein	528	Extracellular (Potential).				endocytosis|endosome to lysosome transport|endosome transport via multivesicular body sorting pathway|glucose import|Golgi to endosome transport|induction of apoptosis by extracellular signals|myotube differentiation|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|neuropeptide signaling pathway|ossification|plasma membrane to endosome transport|regulation of gene expression|response to insulin stimulus|vesicle organization	cell surface|coated pit|early endosome|endoplasmic reticulum membrane|endosome membrane|Golgi cisterna membrane|integral to membrane|lysosomal membrane|microsome|nuclear membrane|perinuclear region of cytoplasm|plasma membrane	enzyme binding|nerve growth factor binding|nerve growth factor receptor activity|neurotensin receptor activity, non-G-protein coupled			ovary(1)	1		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0529)|Colorectal(144;0.142)|Epithelial(280;0.145)|Kidney(133;0.169)|all cancers(265;0.184)		CTCCAGAATCCAGGATGGTGT	0.488													5	249					0	0	3.59834e-05	0	0
GPR61	83873	broad.mit.edu	37	1	110086632	110086632	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:110086632G>C	uc001dxy.2	+	2	1671	c.988G>C	c.(988-990)GGC>CGC	p.G330R		NM_031936	NP_114142	Q9BZJ8	GPR61_HUMAN	G protein-coupled receptor 61	330	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(2)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0426)|Colorectal(144;0.11)|Epithelial(280;0.128)|all cancers(265;0.132)|LUSC - Lung squamous cell carcinoma(189;0.228)		CACCTGGATTGGCTACTTTTG	0.532													4	157					0	0	0.00024832	0	0
GSTM3	2947	broad.mit.edu	37	1	110280350	110280350	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:110280350C>A	uc001dyo.2	-	7	706	c.396G>T	c.(394-396)TTG>TTT	p.L132F	GSTM3_uc001dyp.2_Missense_Mutation_p.L129F|GSTM3_uc010ovv.1_Missense_Mutation_p.L132F	NM_000849	NP_000840	P21266	GSTM3_HUMAN	glutathione S-transferase mu 3	132	GST C-terminal.				establishment of blood-nerve barrier|glutathione metabolic process|response to estrogen stimulus	cytoplasm	glutathione transferase activity|identical protein binding				0		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Colorectal(144;0.0339)|Lung(183;0.0426)|all cancers(265;0.113)|Epithelial(280;0.125)|COAD - Colon adenocarcinoma(174;0.134)|LUSC - Lung squamous cell carcinoma(189;0.228)	Glutathione(DB00143)	GTAGCTCTTCCAAGTACTGAG	0.438													9	162					0.000274275	0.00290969	0.000274275	1	0
EPS8L3	79574	broad.mit.edu	37	1	110300621	110300621	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:110300621G>C	uc001dyr.1	-	9	922	c.777C>G	c.(775-777)GCC>GCG	p.A259A	EPS8L3_uc001dys.1_Silent_p.A259A|EPS8L3_uc001dyq.1_Silent_p.A260A|EPS8L3_uc009wfm.1_Silent_p.A226A|EPS8L3_uc009wfn.1_Silent_p.A234A|EPS8L3_uc009wfo.1_Silent_p.A206A	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	259						cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		TCTTTGCCTGGGCCTTCTCCA	0.542													4	119					0	0	3.59834e-05	0	0
DRAM2	128338	broad.mit.edu	37	1	111668909	111668909	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:111668909C>G	uc001ead.3	-	4	396	c.139G>C	c.(139-141)GGT>CGT	p.G47R	DRAM2_uc001eae.3_Missense_Mutation_p.G47R|DRAM2_uc009wfy.2_RNA|DRAM2_uc001eaf.3_5'UTR	NM_178454	NP_848549	Q6UX65	DRAM2_HUMAN	transmembrane protein 77	47					apoptosis|induction of apoptosis	Golgi apparatus|integral to membrane|lysosomal membrane					0						GCTACTGTACCAGTGTCACTG	0.318													4	100					0	0	3.59834e-05	0	0
CEPT1	10390	broad.mit.edu	37	1	111724911	111724911	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:111724911G>C	uc001eah.1	+	6	1025	c.817G>C	c.(817-819)GGT>CGT	p.G273R	CEPT1_uc001eai.1_Missense_Mutation_p.G273R|CEPT1_uc001eaj.1_Missense_Mutation_p.G273R|CEPT1_uc009wfz.1_Intron	NM_001007794	NP_001007795	Q9Y6K0	CEPT1_HUMAN	choline/ethanolaminephosphotransferase	273						endoplasmic reticulum membrane|integral to membrane|nuclear membrane	diacylglycerol cholinephosphotransferase activity|ethanolaminephosphotransferase activity|metal ion binding				0		all_cancers(81;2.27e-05)|all_epithelial(167;7.36e-06)|all_lung(203;0.00018)|Lung NSC(277;0.000359)		Lung(183;0.0173)|Colorectal(144;0.0375)|all cancers(265;0.0701)|LUSC - Lung squamous cell carcinoma(189;0.0888)|Epithelial(280;0.103)|COAD - Colon adenocarcinoma(174;0.141)	Choline(DB00122)	CTTCACAGGTGGTGTTGGCAA	0.343													4	80					0	0	0.00024832	0	0
OVGP1	5016	broad.mit.edu	37	1	111965597	111965597	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:111965597C>G	uc001eba.2	-	6	616	c.560G>C	c.(559-561)GGG>GCG	p.G187A	OVGP1_uc001eaz.2_Missense_Mutation_p.G149A|OVGP1_uc010owb.1_5'UTR	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	187					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		GTGTGGGACCCCAGAAACAGC	0.547													5	125					0	0	8.12818e-05	0	0
MAGI3	260425	broad.mit.edu	37	1	114216058	114216058	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:114216058G>C	uc001edk.2	+	19	3341	c.3160G>C	c.(3160-3162)GGT>CGT	p.G1054R	MAGI3_uc001edh.3_Missense_Mutation_p.G1079R|MAGI3_uc001edi.3_Missense_Mutation_p.G1054R|MAGI3_uc010owm.1_Missense_Mutation_p.G1079R|MAGI3_uc001edj.2_Missense_Mutation_p.G775R	NM_001142782	NP_001136254	Q5TCQ9	MAGI3_HUMAN	membrane-associated guanylate kinase-related  3	1079	PDZ 6.				apoptosis|interspecies interaction between organisms|intracellular signal transduction	nucleus|tight junction	ATP binding|guanylate kinase activity|protein binding			lung(3)|ovary(2)|central_nervous_system(1)	6	Lung SC(450;0.184)	all_cancers(81;2.34e-09)|all_epithelial(167;7.41e-09)|all_lung(203;7.13e-06)|Lung NSC(69;1.2e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGCTGAAGATGGTCCTGCCAT	0.488													4	173					0	0	3.59834e-05	0	0
MAGI3	260425	broad.mit.edu	37	1	114225528	114225528	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:114225528A>C	uc001edk.2	+	21	3519	c.3338A>C	c.(3337-3339)GAT>GCT	p.D1113A	MAGI3_uc001edi.3_3'UTR|MAGI3_uc010owm.1_3'UTR|MAGI3_uc001edj.2_3'UTR|MAGI3_uc009wgo.2_RNA	NM_001142782	NP_001136254	Q5TCQ9	MAGI3_HUMAN	membrane-associated guanylate kinase-related  3	1138					apoptosis|interspecies interaction between organisms|intracellular signal transduction	nucleus|tight junction	ATP binding|guanylate kinase activity|protein binding			lung(3)|ovary(2)|central_nervous_system(1)	6	Lung SC(450;0.184)	all_cancers(81;2.34e-09)|all_epithelial(167;7.41e-09)|all_lung(203;7.13e-06)|Lung NSC(69;1.2e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGTGATTGGGATATTAATAAT	0.328													6	62					0	0	3.59834e-05	0	0
PTPN22	26191	broad.mit.edu	37	1	114402026	114402026	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:114402026C>G	uc001eds.2	-	2	274	c.144G>C	c.(142-144)GTG>GTC	p.V48V	uc001edv.1_Intron|PTPN22_uc009wgq.2_Silent_p.V48V|PTPN22_uc010owo.1_5'UTR|PTPN22_uc001edt.2_Silent_p.V48V|PTPN22_uc009wgr.2_Silent_p.V48V|PTPN22_uc009wgs.2_Silent_p.V48V|PTPN22_uc001edu.2_Silent_p.V48V	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	48	Tyrosine-protein phosphatase.				negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCTTCTCAGCCACAGTTGTAG	0.348													4	190					0	0	0.000602214	0	0
AP4B1	10717	broad.mit.edu	37	1	114438931	114438931	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:114438931G>C	uc001eeb.2	-	8	1602	c.1459C>G	c.(1459-1461)CGA>GGA	p.R487G	uc001edv.1_Intron|AP4B1_uc001eec.2_Missense_Mutation_p.R319G|AP4B1_uc001eed.2_Missense_Mutation_p.R487G|AP4B1_uc010owp.1_Missense_Mutation_p.R388G|AP4B1_uc001eea.1_Missense_Mutation_p.R281G|AP4B1_uc001eee.1_Missense_Mutation_p.R14G	NM_006594	NP_006585	Q9Y6B7	AP4B1_HUMAN	adaptor-related protein complex 4, beta 1	487					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|soluble fraction|trans-Golgi network	protein binding|protein transporter activity			ovary(3)|central_nervous_system(1)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.1e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCAGCAGGTCGGGAGAGGAAA	0.443													4	137					0	0	0.00024832	0	0
TRIM33	51592	broad.mit.edu	37	1	114970453	114970453	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:114970453G>C	uc001eew.2	-	7	1303	c.1219C>G	c.(1219-1221)CGG>GGG	p.R407G	TRIM33_uc010owr.1_Missense_Mutation_p.R15G|TRIM33_uc010ows.1_Missense_Mutation_p.R15G|TRIM33_uc001eex.2_Missense_Mutation_p.R407G	NM_015906	NP_056990	Q9UPN9	TRI33_HUMAN	tripartite motif-containing 33 protein isoform	407					negative regulation of BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination|regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	nucleus	co-SMAD binding|DNA binding|ligase activity|R-SMAD binding|zinc ion binding			lung(4)|central_nervous_system(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	11	all_epithelial(7;0.000132)|all_lung(7;0.00106)|Lung SC(450;0.184)	all_cancers(81;3.03e-08)|all_epithelial(167;3.24e-08)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTCACCTGCCGGGAAAGGCCT	0.443			T	RET	papillary thyroid								4	120					0	0	0.000157383	0	0
NRAS	4893	broad.mit.edu	37	1	115256579	115256579	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:115256579C>A	uc009wgu.2	-	3	386	c.132G>T	c.(130-132)GTG>GTT	p.V44V		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	44					activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity			haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CATCTATAACCACTTGTTTTC	0.458		50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			9	177					3.45872e-05	0.000417197	0.000422831	1	0
TTF2	8458	broad.mit.edu	37	1	117644044	117644045	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:117644044_117644045CC>AA	uc001egy.2	+	23	3407_3408	c.3387_3388CC>AA	c.(3385-3390)CTCCAA>CTAAAA	p.Q1130K		NM_003594	NP_003585	Q9UNY4	TTF2_HUMAN	transcription termination factor, RNA polymerase	1130	Helicase C-terminal.				mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|termination of RNA polymerase II transcription	cytoplasm|spliceosomal complex|transcription elongation factor complex	ATP binding|ATP-dependent helicase activity|DNA binding|DNA-dependent ATPase activity|protein binding|zinc ion binding			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;4.23e-06)|all_epithelial(167;3.65e-07)|all_lung(203;2.81e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0553)|Colorectal(144;0.179)|LUSC - Lung squamous cell carcinoma(189;0.19)		TCTTACAGCTCCAAGAAAAAAA	0.376													8	248					0	0	6.4e-05	0	0
WDR3	10885	broad.mit.edu	37	1	118481173	118481173	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:118481173C>G	uc010oxe.1	+	5	637	c.571C>G	c.(571-573)CGG>GGG	p.R191G	WDR3_uc001ehi.2_Intron|WDR3_uc001ehh.2_Missense_Mutation_p.R20G	NM_006784	NP_006775	Q9UNX4	WDR3_HUMAN	WD repeat-containing protein 3	191	WD 5.					nuclear membrane|nucleolus				upper_aerodigestive_tract(1)	1	Esophageal squamous(2;0.162)	all_cancers(81;2.72e-05)|Acute lymphoblastic leukemia(138;1e-08)|all_epithelial(167;4.4e-07)|all_lung(203;1.7e-06)|Lung NSC(69;1.98e-05)|Prostate(1639;0.00955)|Breast(1374;0.244)		OV - Ovarian serous cystadenocarcinoma(397;1.39e-08)|Epithelial(280;1.82e-07)|all cancers(265;2.04e-05)|Lung(183;0.0525)|BRCA - Breast invasive adenocarcinoma(282;0.0695)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.185)		GGTTGGCCACCGGACTGAGGT	0.438													3	67					0	0	0.000602214	0	0
WDR3	10885	broad.mit.edu	37	1	118501574	118501574	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:118501574C>G	uc010oxe.1	+	26	2690	c.2624C>G	c.(2623-2625)CCA>CGA	p.P875R	WDR3_uc001ehi.2_Intron|SPAG17_uc001ehk.2_Intron	NM_006784	NP_006775	Q9UNX4	WDR3_HUMAN	WD repeat-containing protein 3	875						nuclear membrane|nucleolus				upper_aerodigestive_tract(1)	1	Esophageal squamous(2;0.162)	all_cancers(81;2.72e-05)|Acute lymphoblastic leukemia(138;1e-08)|all_epithelial(167;4.4e-07)|all_lung(203;1.7e-06)|Lung NSC(69;1.98e-05)|Prostate(1639;0.00955)|Breast(1374;0.244)		OV - Ovarian serous cystadenocarcinoma(397;1.39e-08)|Epithelial(280;1.82e-07)|all cancers(265;2.04e-05)|Lung(183;0.0525)|BRCA - Breast invasive adenocarcinoma(282;0.0695)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.185)		ATGCTTGTGCCAGTGATAGAA	0.383													7	101					0	0	0.000978159	0	0
SPAG17	200162	broad.mit.edu	37	1	118558601	118558601	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:118558601G>T	uc001ehk.2	-	29	4342	c.4274C>A	c.(4273-4275)CCT>CAT	p.P1425H		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1425						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TCCATTGACAGGATCTGTGGC	0.328													7	76					0.000978159	0.00917326	0.000978159	1	0
PHGDH	26227	broad.mit.edu	37	1	120277322	120277322	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:120277322C>G	uc001ehz.2	+	6	803	c.576C>G	c.(574-576)CCC>CCG	p.P192P	PHGDH_uc009whl.2_Silent_p.P94P|PHGDH_uc009whm.2_Silent_p.P90P|PHGDH_uc001eia.2_Silent_p.P192P|PHGDH_uc009whn.2_Silent_p.P192P|PHGDH_uc001eib.2_Silent_p.P158P	NM_006623	NP_006614	O43175	SERA_HUMAN	phosphoglycerate dehydrogenase	192					brain development|L-serine biosynthetic process		electron carrier activity|NAD binding|phosphoglycerate dehydrogenase activity			ovary(1)	1	all_cancers(5;1.18e-09)|all_epithelial(5;2.16e-10)|Melanoma(3;1.93e-05)|all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0347)		Lung(183;0.0111)|LUSC - Lung squamous cell carcinoma(189;0.0593)	NADH(DB00157)	AGCAGCTGCCCCTGGAGGAGA	0.537													4	269					0	0	0.000157383	0	0
NBPF7	343505	broad.mit.edu	37	1	120382883	120382883	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:120382883G>T	uc010oxk.1	-	4	1244	c.623C>A	c.(622-624)CCC>CAC	p.P208H		NM_001047980	NP_001041445	P0C2Y1	NBPF7_HUMAN	hypothetical protein LOC343505	208	NBPF 1.					cytoplasm				ovary(1)|skin(1)	2	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;3.66e-05)|Lung NSC(69;0.000192)|all_epithelial(167;0.0347)		Lung(183;0.0103)|LUSC - Lung squamous cell carcinoma(189;0.0544)		GTCTTACCTGGGAGCAGGTGA	0.403													8	233					0.000978159	0.00917326	0.000978159	1	0
ADAM30	11085	broad.mit.edu	37	1	120436621	120436621	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:120436621G>T	uc001eij.2	-	1	2493	c.2339C>A	c.(2338-2340)CCC>CAC	p.P780H		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	780	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		CTTTGCTTTGGGTCGTTTACT	0.363													16	507					0.000566183	0.0056887	0.000566183	1	0
ADAM30	11085	broad.mit.edu	37	1	120438160	120438160	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:120438160G>T	uc001eij.2	-	1	954	c.800C>A	c.(799-801)CCA>CAA	p.P267Q		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	267	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		AGCTAACTCTGGATATCCAAC	0.348													18	625					3.70037e-05	0.000440976	0.000279167	1	0
ADAM30	11085	broad.mit.edu	37	1	120438167	120438167	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:120438167C>A	uc001eij.2	-	1	947	c.793G>T	c.(793-795)GGA>TGA	p.G265*		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	265	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		TCTGGATATCCAACGCGTATT	0.353													11	638					0.000151284	0.00173001	0.000151284	1	0
NBPF9	400818	broad.mit.edu	37	1	144619403	144619403	+	Missense_Mutation	SNP	A	G	G	rs4067646		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:144619403A>G	uc009wig.1	+	7	626	c.550A>G	c.(550-552)AAA>GAA	p.K184E	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Missense_Mutation_p.K184E|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Missense_Mutation_p.K115E|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Missense_Mutation_p.K115E|NBPF9_uc010oyg.1_Missense_Mutation_p.K149E|NBPF9_uc009wii.1_Intron	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	184	NBPF 1.					cytoplasm					0						GAAAGTGCAGAAATCATCTGC	0.413													8	311					0	0	0.000274275	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144917822	144917822	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:144917822C>A	uc001elw.3	-	11	1755	c.1464G>T	c.(1462-1464)CTG>CTT	p.L488L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Silent_p.L554L|PDE4DIP_uc001emc.1_Silent_p.L488L|PDE4DIP_uc001emd.1_Silent_p.L488L|PDE4DIP_uc001emb.1_Silent_p.L651L|PDE4DIP_uc001eme.1_Silent_p.L17L|PDE4DIP_uc001emf.1_Silent_p.L275L	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	488	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TACATACCTCCAGAGCAACAG	0.373			T	PDGFRB	MPD								11	358					5.50884e-06	6.81381e-05	0.00010058	1	0
NBPF10	100132406	broad.mit.edu	37	1	145296373	145296373	+	Missense_Mutation	SNP	G	T	T	rs3969711		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:145296373G>T	uc001end.3	+	3	330	c.295G>T	c.(295-297)GTT>TTT	p.V99F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Missense_Mutation_p.V99F|NBPF10_uc001emq.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	99											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		TAAAGTCCTAGTTCACTCTCA	0.473													14	171					1.37285e-15	1.84094e-14	0.000422831	1	0
NBPF10	100132406	broad.mit.edu	37	1	145311916	145311916	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:145311916A>G	uc001end.3	+	14	2019	c.1984A>G	c.(1984-1986)ATA>GTA	p.I662V	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_5'UTR|NBPF10_uc010oyl.1_5'UTR|NBPF10_uc010oyj.1_5'UTR|NBPF10_uc010oym.1_5'Flank	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		TGCCTTTTACATATTGGAGCA	0.458													5	88					0	0	3.59834e-05	0	0
ANKRD34A	284615	broad.mit.edu	37	1	145474058	145474058	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:145474058A>G	uc001enq.1	+	4	2023	c.730A>G	c.(730-732)AGG>GGG	p.R244G	NBPF10_uc001emp.3_Intron	NM_001039888	NP_001034977	Q69YU3	AN34A_HUMAN	ankyrin repeat domain 34	244	Pro-rich.										0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					ACCACTCAAAAGGCTCAACTC	0.612													4	146					0	0	0.00024832	0	0
PIAS3	10401	broad.mit.edu	37	1	145579312	145579312	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:145579312G>T	uc001eoc.1	+	5	740	c.649G>T	c.(649-651)GGG>TGG	p.G217W	NBPF10_uc001emp.3_Intron|PIAS3_uc010oyy.1_Missense_Mutation_p.G208W|PIAS3_uc001eod.1_5'Flank	NM_006099	NP_006090	Q9Y6X2	PIAS3_HUMAN	protein inhibitor of activated STAT, 3	217	PINIT.				positive regulation of protein sumoylation|protein sumoylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	enzyme binding|nucleic acid binding|protein C-terminus binding|zinc ion binding			ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CAAGGTCAATGGGAAACTGTG	0.453													8	172					6.40141e-05	0.00075092	0.000978159	1	0
PDIA3P	171423	broad.mit.edu	37	1	146650720	146650720	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:146650720C>G	uc001epg.1	+	1	1291	c.1028C>G	c.(1027-1029)TCG>TGG	p.S343W		NR_002305				SubName: Full=cDNA FLJ53558, highly similar to Protein disulfide-isomerase A3 (EC 5.3.4.1);												0						GAGGATTTCTCGCGTGATGGG	0.468													7	214					0	0	0.000673444	0	0
NBPF14	25832	broad.mit.edu	37	1	148015662	148015662	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:148015662C>G	uc001eqq.2	-	8	986	c.969G>C	c.(967-969)TTG>TTC	p.L323F	LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqf.2_Intron|LOC200030_uc001eqg.2_Intron|FLJ39739_uc001eqo.1_Intron|NBPF14_uc010pab.1_Intron|NBPF14_uc010pac.1_Intron|NBPF14_uc001eqx.2_Intron|NBPF14_uc010pae.1_Intron|NBPF14_uc010paf.1_Intron|NBPF14_uc001eqs.1_Missense_Mutation_p.L202F	NM_015383	NP_056198	Q5TI25	NBPFE_HUMAN	hypothetical protein LOC25832	323	NBPF 3.					cytoplasm				ovary(1)	1	all_hematologic(923;0.032)					GCTGTTGCTCCAATACGTAAA	0.453													6	111					0	0	8.12818e-05	0	0
LOC200030	200030	broad.mit.edu	37	1	148342474	148342474	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:148342474G>C	uc001eqf.2	-	4	597	c.562C>G	c.(562-564)CCC>GCC	p.P188A	LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|NBPF14_uc009wkf.1_Intron|uc001erd.3_Missense_Mutation_p.P188A|uc001erc.3_RNA|uc010paj.1_Intron|uc010pau.1_5'Flank|uc010pav.1_Missense_Mutation_p.P188A|uc010paw.1_Missense_Mutation_p.P113A	NM_017940	NP_060410	Q86T75	NBPFB_HUMAN	hypothetical protein LOC55672	188	NBPF 1.					cytoplasm					0						TGTTACCTGGGGGCAGATGAT	0.428													5	361					0	0	0.000157383	0	0
LOC200030	200030	broad.mit.edu	37	1	148344692	148344692	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:148344692G>C	uc001eqf.2	-	2	261	c.226C>G	c.(226-228)CAG>GAG	p.Q76E	LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|NBPF14_uc009wkf.1_Intron|uc001erd.3_Missense_Mutation_p.Q76E|uc001erc.3_Intron|uc010paj.1_Intron|uc010pau.1_5'Flank|uc010pav.1_Missense_Mutation_p.Q76E|uc010paw.1_Intron	NM_017940	NP_060410	Q86T75	NBPFB_HUMAN	hypothetical protein LOC55672	76	Potential.					cytoplasm					0						TCCTTGAACTGTCGCTCATTC	0.532													4	314					0	0	0.00024832	0	0
FCGR1A	2209	broad.mit.edu	37	1	149759970	149759970	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:149759970C>T	uc001esp.3	+	4	406	c.356C>T	c.(355-357)CCT>CTT	p.P119L	HIST2H2BF_uc010pbj.1_Intron|FCGR1A_uc009wlg.2_RNA|FCGR1A_uc009wlh.1_RNA	NM_000566	NP_000557	P12314	FCGR1_HUMAN	Fc fragment of IgG, high affinity Ia, receptor	119	Ig-like C2-type 2.|Extracellular (Potential).				interferon-gamma-mediated signaling pathway|phagocytosis, engulfment	integral to membrane|plasma membrane	IgG binding|receptor activity|receptor signaling protein activity			ovary(1)	1	Breast(34;0.0124)|all_hematologic(923;0.127)				Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Methyl aminolevulinate(DB00992)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Porfimer(DB00707)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GAAGGAGAACCTCTGGCCTTG	0.453													9	101					0	0	0.000978159	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858584	149858584	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:149858584C>G	uc001etd.2	+	1	60	c.60C>G	c.(58-60)TCC>TCG	p.S20S	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	20					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CGCGCTCGTCCCGCGCTGGCC	0.647													4	116					0	0	0.000157383	0	0
SV2A	9900	broad.mit.edu	37	1	149884923	149884923	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:149884923C>T	uc001etg.2	-	2	961	c.470G>A	c.(469-471)CGG>CAG	p.R157Q	SV2A_uc001eth.2_Missense_Mutation_p.R157Q	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	157	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	GCCACACTCCCGTAGGATGGC	0.617													5	81					0	0	0.000602214	0	0
OTUD7B	56957	broad.mit.edu	37	1	149916792	149916792	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:149916792G>T	uc001etn.2	-	12	1852	c.1496C>A	c.(1495-1497)GCA>GAA	p.A499E		NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne	499					negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			CACAGAATCTGCTCTCTTCTT	0.552													8	217					3.86212e-05	0.000457303	0.000673444	1	0
C1orf51	148523	broad.mit.edu	37	1	150256877	150256877	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:150256877C>A	uc001euh.2	+	4	620	c.484C>A	c.(484-486)CAG>AAG	p.Q162K	C1orf51_uc001eui.2_Missense_Mutation_p.Q74K|C1orf51_uc001euj.2_Missense_Mutation_p.Q162K	NM_144697	NP_653298	Q8N365	CA051_HUMAN	hypothetical protein LOC148523	162											0	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGACAGGATCCAGCGTATTGT	0.463													8	177					2.27111e-07	2.94575e-06	0.00010058	1	0
CTSK	1513	broad.mit.edu	37	1	150772120	150772120	+	Silent	SNP	G	T	T	rs142097792	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:150772120G>T	uc001evp.1	-	6	808	c.684C>A	c.(682-684)CCC>CCA	p.P228P	CTSK_uc001evq.1_Silent_p.P139P	NM_000396	NP_000387	P43235	CATK_HUMAN	cathepsin K preproprotein	228					proteolysis	lysosome	cysteine-type endopeptidase activity|protein binding			skin(1)	1	all_cancers(9;2.32e-51)|all_epithelial(9;3.89e-42)|all_lung(15;4.59e-35)|Lung NSC(24;1.7e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Colorectal(459;0.171)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0485)|BRCA - Breast invasive adenocarcinoma(12;0.00606)|LUSC - Lung squamous cell carcinoma(543;0.211)			CATTCCCCTCGGGGATCTCTC	0.507													5	139					0.000157383	0.00173811	0.000157383	1	0
ARNT	405	broad.mit.edu	37	1	150784569	150784569	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:150784569C>G	uc001evr.1	-	22	2441	c.2298G>C	c.(2296-2298)CTG>CTC	p.L766L	ARNT_uc010pck.1_Silent_p.L254L|ARNT_uc001evs.1_Silent_p.L751L|ARNT_uc009wmb.1_Silent_p.L752L|ARNT_uc009wmc.1_Silent_p.L764L|ARNT_uc009wmd.1_Silent_p.L750L	NM_001668	NP_001659	P27540	ARNT_HUMAN	aryl hydrocarbon receptor nuclear translocator	766	Gln-rich.				positive regulation of hormone biosynthetic process|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|response to hypoxia		aryl hydrocarbon receptor binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity			skin(4)|lung(3)|central_nervous_system(1)|kidney(1)	9	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.02)|BRCA - Breast invasive adenocarcinoma(12;0.00606)|LUSC - Lung squamous cell carcinoma(543;0.211)			TCTGATCTCCCAGCATGGACA	0.443			T	ETV6	AML								4	97					0	0	0.000602214	0	0
SETDB1	9869	broad.mit.edu	37	1	150917520	150917520	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:150917520A>G	uc001evu.2	+	9	1266	c.1076A>G	c.(1075-1077)GAA>GGA	p.E359G	SETDB1_uc009wmf.2_Missense_Mutation_p.E359G|SETDB1_uc001evv.2_Missense_Mutation_p.E359G|SETDB1_uc001evw.3_Missense_Mutation_p.E359G|SETDB1_uc009wmg.1_Missense_Mutation_p.E359G	NM_001145415	NP_001138887	Q15047	SETB1_HUMAN	SET domain, bifurcated 1 isoform 1	359	Tudor 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|Golgi apparatus|nucleus|plasma membrane	DNA binding|histone-lysine N-methyltransferase activity|protein binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|BRCA - Breast invasive adenocarcinoma(12;0.0152)|LUSC - Lung squamous cell carcinoma(543;0.211)			ACTGAGTGGGAAGGCACGTGG	0.537													3	73					0	0	6.4e-05	0	0
SELENBP1	8991	broad.mit.edu	37	1	151340722	151340722	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:151340722C>G	uc001exx.2	-	5	481	c.434G>C	c.(433-435)GGG>GCG	p.G145A	SELENBP1_uc010pcy.1_Missense_Mutation_p.G187A|SELENBP1_uc001exy.2_Missense_Mutation_p.G42A|SELENBP1_uc001exz.2_Missense_Mutation_p.G42A|SELENBP1_uc010pcz.1_Missense_Mutation_p.G83A|SELENBP1_uc009wms.2_Missense_Mutation_p.G42A|SELENBP1_uc009wmt.2_Missense_Mutation_p.G42A|SELENBP1_uc001eya.2_Missense_Mutation_p.G81A|SELENBP1_uc009wmu.2_Missense_Mutation_p.G42A	NM_003944	NP_003935	Q13228	SBP1_HUMAN	selenium binding protein 1	145					protein transport	cytosol|membrane|nucleolus	protein binding|selenium binding				0	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			CATCACTTCCCCGCTGGCCAG	0.567													4	113					0	0	0.00024832	0	0
PSMB4	5692	broad.mit.edu	37	1	151373032	151373032	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:151373032C>G	uc001eyc.1	+	3	485	c.462C>G	c.(460-462)ACC>ACG	p.T154T	PSMB4_uc010pda.1_Silent_p.T154T|PSMB4_uc001eyb.1_3'UTR	NM_002796	NP_002787	P28070	PSB4_HUMAN	proteasome beta 4 subunit	154					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity			ovary(2)	2	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TGTGGAACACCATGGTCATCG	0.468													4	224					0	0	3.59834e-05	0	0
LINGO4	339398	broad.mit.edu	37	1	151773644	151773644	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:151773644C>A	uc001ezf.1	-	2	1727	c.1537G>T	c.(1537-1539)GAC>TAC	p.D513Y		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	513	Extracellular (Potential).					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			ATGTTGGGGTCAGAAAGTGTG	0.577													7	143					0.000274275	0.00290969	0.000274275	1	0
RORC	6097	broad.mit.edu	37	1	151801933	151801933	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:151801933C>A	uc001ezh.2	-	2	150	c.42G>T	c.(40-42)GAG>GAT	p.E14D	RORC_uc010pdo.1_Missense_Mutation_p.E68D|RORC_uc010pdp.1_Missense_Mutation_p.E14D	NM_005060	NP_005051	P51449	RORG_HUMAN	RAR-related orphan receptor C isoform a	14	Modulating (Potential).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CAGCCAGCAGCTCTGTAAAGA	0.532													6	122					1.06961e-07	1.39386e-06	0.000157383	1	0
TCHH	7062	broad.mit.edu	37	1	152084090	152084090	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:152084090C>G	uc001ezp.2	-	2	1603	c.1603G>C	c.(1603-1605)GAG>CAG	p.E535Q	TCHH_uc009wne.1_Missense_Mutation_p.E535Q	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	535	9 X 28 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGTTGTTGCTCGCTCCTCAAC	0.652													4	187					0	0	0.00024832	0	0
RPTN	126638	broad.mit.edu	37	1	152127897	152127897	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:152127897C>G	uc001ezs.1	-	3	1743	c.1678G>C	c.(1678-1680)GGT>CGT	p.G560R		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	560	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TCTGTCTGACCGTAGTGGGAA	0.502													4	220					0	0	0.000157383	0	0
HRNR	388697	broad.mit.edu	37	1	152187633	152187633	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:152187633G>C	uc001ezt.1	-	3	6548	c.6472C>G	c.(6472-6474)CGC>GGC	p.R2158G		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2158	24.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGACCATAGCGGGAAGACGAA	0.617													7	617					0	0	0.000274275	0	0
HRNR	388697	broad.mit.edu	37	1	152188491	152188491	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:152188491C>A	uc001ezt.1	-	3	5690	c.5614G>T	c.(5614-5616)GGT>TGT	p.G1872C		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1872	20.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCATGGTGACCAAATCCAGAA	0.572													10	404					4.36969e-10	5.82017e-09	0.000151284	1	0
FLG	2312	broad.mit.edu	37	1	152276144	152276144	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:152276144C>A	uc001ezu.1	-	3	11254	c.11218G>T	c.(11218-11220)GAG>TAG	p.E3740*		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3740	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CGTGCCTGCTCGTGGCGGGAT	0.597									Ichthyosis				7	177					7.48243e-07	9.56199e-06	0.000442599	1	0
FLG	2312	broad.mit.edu	37	1	152281912	152281912	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:152281912G>C	uc001ezu.1	-	3	5486	c.5450C>G	c.(5449-5451)CCA>CGA	p.P1817R		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1817	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCTTGACCCTGGGTGTCCACG	0.587									Ichthyosis				6	290					0	0	0.000442599	0	0
FLG	2312	broad.mit.edu	37	1	152283856	152283856	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:152283856G>C	uc001ezu.1	-	3	3542	c.3506C>G	c.(3505-3507)CCG>CGG	p.P1169R	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1169	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTTGACCCCGGGTGTGCACG	0.597									Ichthyosis				5	232					0	0	0.000978159	0	0
FLG	2312	broad.mit.edu	37	1	152284030	152284030	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:152284030G>T	uc001ezu.1	-	3	3368	c.3332C>A	c.(3331-3333)TCT>TAT	p.S1111Y	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1111	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGAACGTCCAGACCTTCCCCC	0.582									Ichthyosis				8	222					0.000219431	0.00241088	0.000219431	1	0
FLG2	388698	broad.mit.edu	37	1	152328686	152328686	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:152328686C>G	uc001ezw.3	-	3	1649	c.1576G>C	c.(1576-1578)GGA>CGA	p.G526R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	526	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGGATTGTCCTGAGACAGAC	0.502													4	225					0	0	0.00024832	0	0
NPR1	4881	broad.mit.edu	37	1	153661934	153661934	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:153661934G>T	uc001fcs.3	+	18	3115	c.2694G>T	c.(2692-2694)GTG>GTT	p.V898V	NPR1_uc010pdz.1_Silent_p.V644V|NPR1_uc010pea.1_Silent_p.V376V	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	898	Guanylate cyclase.|Cytoplasmic (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	TCCAGGTGGTGACCCTGCTCA	0.537													8	193					0.000978159	0.00917326	0.000978159	1	0
NPR1	4881	broad.mit.edu	37	1	153661952	153661952	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:153661952G>T	uc001fcs.3	+	18	3133	c.2712G>T	c.(2710-2712)CTG>CTT	p.L904L	NPR1_uc010pdz.1_Silent_p.L650L|NPR1_uc010pea.1_Silent_p.L382L	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	904	Guanylate cyclase.|Cytoplasmic (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	TCAATGACCTGTACACTTGCT	0.522													6	202					0.000978159	0.00917326	0.000978159	1	0
C1orf189	388701	broad.mit.edu	37	1	154173005	154173005	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:154173005G>T	uc001fee.1	-	3	160	c.134C>A	c.(133-135)CCG>CAG	p.P45Q		NM_001010979	NP_001010979	Q5VU69	CA189_HUMAN	hypothetical protein LOC388701	45											0	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)					GGTGGCATACGGGTTTCTTCT	0.517													6	169					0.000274275	0.00290969	0.000274275	1	0
ATP8B2	57198	broad.mit.edu	37	1	154314975	154314975	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:154314975G>C	uc001fex.2	+	14	1362	c.1362G>C	c.(1360-1362)CTG>CTC	p.L454L		NM_020452	NP_065185	P98198	AT8B2_HUMAN	ATPase, class I, type 8B, member 2 isoform a	440	Cytoplasmic (Potential).				ATP biosynthetic process	plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(1)|skin(1)	2	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			TTGACGTCCTGGGACACAAAG	0.478													5	94					0	0	3.59834e-05	0	0
IL6R	3570	broad.mit.edu	37	1	154420645	154420645	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:154420645C>G	uc001fez.1	+	7	1431	c.994C>G	c.(994-996)CAG>GAG	p.Q332E	IL6R_uc001ffa.1_Missense_Mutation_p.Q332E	NM_000565	NP_000556	P08887	IL6RA_HUMAN	interleukin 6 receptor isoform 1 precursor	332	Extracellular (Potential).				acute-phase response|ciliary neurotrophic factor-mediated signaling pathway|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|endocrine pancreas development|hepatic immune response|negative regulation of collagen biosynthetic process|negative regulation of interleukin-8 production|positive regulation of activation of Janus kinase activity|positive regulation of anti-apoptosis|positive regulation of chemokine production|positive regulation of chemokine production|positive regulation of interleukin-6 production|positive regulation of leukocyte chemotaxis|positive regulation of MAPKKK cascade|positive regulation of osteoblast differentiation|positive regulation of smooth muscle cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of apoptosis	apical plasma membrane|basolateral plasma membrane|extracellular space|interleukin-6 receptor complex	ciliary neurotrophic factor binding|enzyme binding|protein homodimerization activity			ovary(3)|breast(1)	4	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			CACCCCCATGCAGGTGAGCTC	0.408													4	147					0	0	0.00024832	0	0
CKS1B	1163	broad.mit.edu	37	1	154950478	154950478	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:154950478C>A	uc001fgb.2	+	2	179	c.75C>A	c.(73-75)CCC>CCA	p.P25P	CKS1B_uc001fga.2_RNA	NM_001826	NP_001817	P61024	CKS1_HUMAN	CDC28 protein kinase 1B	25					cell division|cell proliferation|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity|S phase of mitotic cell cycle	nucleoplasm	cyclin-dependent protein kinase regulator activity|protein binding				0	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TCATGCTGCCCAAGGACATAG	0.453													7	79					3.09899e-07	4.00456e-06	0.000274275	1	0
GON4L	54856	broad.mit.edu	37	1	155726789	155726789	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:155726789T>C	uc001flz.2	-	27	5574	c.5477A>G	c.(5476-5478)AAC>AGC	p.N1826S	GON4L_uc009wrg.1_RNA|GON4L_uc001fly.1_Missense_Mutation_p.N1826S|GON4L_uc009wrh.1_Missense_Mutation_p.N1826S|GON4L_uc001fma.1_Missense_Mutation_p.N1826S|GON4L_uc001fmb.3_Missense_Mutation_p.N1022S	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	1826					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					TTTCCTCTTGTTCTTTGAGGC	0.348													4	99					0	0	0.00024832	0	0
SYT11	23208	broad.mit.edu	37	1	155851143	155851143	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:155851143C>A	uc001fmg.2	+	4	1403	c.1140C>A	c.(1138-1140)CTC>CTA	p.L380L	SYT11_uc010pgq.1_Silent_p.L73L	NM_152280	NP_689493	Q9BT88	SYT11_HUMAN	synaptotagmin XI	380	C2 2.|Cytoplasmic (Potential).					cell junction|synaptic vesicle membrane	protein binding|transporter activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;0.000162)			TCGAGTTCCTCGTTATCGACT	0.522													7	293					8.12818e-05	0.000938396	8.12818e-05	1	0
NES	10763	broad.mit.edu	37	1	156642361	156642361	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:156642361G>A	uc001fpq.2	-	4	1752	c.1619C>T	c.(1618-1620)CCT>CTT	p.P540L		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	540	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TTTTTCCAAAGGAACCTGGGA	0.458													13	145					0	0	0.000151284	0	0
HDGF	3068	broad.mit.edu	37	1	156714117	156714117	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:156714117C>A	uc001fpy.3	-	4	649	c.327G>T	c.(325-327)GTG>GTT	p.V109V	HDGF_uc009wsd.2_Silent_p.V77V|HDGF_uc001fpz.3_Silent_p.V102V|HDGF_uc009wse.2_Silent_p.V125V|HDGF_uc010phr.1_Silent_p.V132V|HDGF_uc009wsf.2_Silent_p.V77V|HDGF_uc009wsg.2_Silent_p.V109V	NM_004494	NP_004485	P51858	HDGF_HUMAN	hepatoma-derived growth factor isoform a	109					cell proliferation|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus	DNA binding|growth factor activity|heparin binding|nucleotide binding			lung(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)	Breast(1374;0.198)		Colorectal(1306;0.018)		CAGGCTCTTCCACACAGCTCT	0.612													9	274					0.000442599	0.00445669	0.000442599	1	0
SH2D2A	9047	broad.mit.edu	37	1	156779522	156779522	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:156779522C>A	uc001fqd.2	-	6	785	c.645G>T	c.(643-645)CAG>CAT	p.Q215H	SH2D2A_uc001fqc.1_Missense_Mutation_p.Q187H|SH2D2A_uc009wsh.2_Missense_Mutation_p.Q225H|SH2D2A_uc001fqe.2_Missense_Mutation_p.Q197H|SH2D2A_uc010phs.1_Missense_Mutation_p.Q215H	NM_003975	NP_003966	Q9NP31	SH22A_HUMAN	SH2 domain protein 2A isoform 2	215	Pro-rich.				angiogenesis|cell differentiation|signal transduction	cytoplasm|soluble fraction	SH3 domain binding|SH3/SH2 adaptor activity				0	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TTGGGCTGTACTGGGGGTTTG	0.582													5	133					0.000274275	0.00290969	0.000274275	1	0
KIRREL	55243	broad.mit.edu	37	1	158057916	158057916	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:158057916C>A	uc001frn.3	+	7	1292	c.888C>A	c.(886-888)ACC>ACA	p.T296T	KIRREL_uc010pib.1_Silent_p.T196T|KIRREL_uc009wsq.2_Silent_p.T132T|KIRREL_uc001fro.3_Silent_p.T94T	NM_018240	NP_060710	Q96J84	KIRR1_HUMAN	kin of IRRE like precursor	296	Extracellular (Potential).|Ig-like C2-type 3.					integral to membrane				ovary(1)	1	all_hematologic(112;0.0378)					TGGGAAGCACCAATGTCAGCA	0.532											OREG0013906	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	181					0.000274275	0.00290969	0.000274275	1	0
KIRREL	55243	broad.mit.edu	37	1	158058125	158058125	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:158058125C>T	uc001frn.3	+	8	1329	c.925C>T	c.(925-927)CGG>TGG	p.R309W	KIRREL_uc010pib.1_Missense_Mutation_p.R209W|KIRREL_uc009wsq.2_Missense_Mutation_p.R145W|KIRREL_uc001fro.3_Missense_Mutation_p.R107W	NM_018240	NP_060710	Q96J84	KIRR1_HUMAN	kin of IRRE like precursor	309	Extracellular (Potential).|Ig-like C2-type 4.					integral to membrane				ovary(1)	1	all_hematologic(112;0.0378)					AGTTGCTCCCCGGATTGTAGT	0.542											OREG0013906	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	155					0	0	3.59834e-05	0	0
OR10K1	391109	broad.mit.edu	37	1	158435861	158435861	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:158435861C>T	uc010pij.1	+	1	510	c.510C>T	c.(508-510)TCC>TCT	p.S170S		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	170	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CCTTCCACTCCTCCAACCAGC	0.537													5	136					0	0	8.12818e-05	0	0
DARC	2532	broad.mit.edu	37	1	159175443	159175443	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:159175443G>C	uc001fto.2	+	2	454	c.214G>C	c.(214-216)GGT>CGT	p.G72R	DARC_uc001ftp.3_Missense_Mutation_p.G74R	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	72	Helical; Name=1; (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					CAGTGTCCTGGGTATCCTAGC	0.592													4	121					0	0	3.59834e-05	0	0
PIGM	93183	broad.mit.edu	37	1	160001019	160001019	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:160001019C>G	uc001fuv.1	-	1	765	c.511G>C	c.(511-513)GTA>CTA	p.V171L		NM_145167	NP_660150	Q9H3S5	PIGM_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	171	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CCATAGAATACAGCTGCACAC	0.493													4	172					0	0	3.59834e-05	0	0
NCSTN	23385	broad.mit.edu	37	1	160321505	160321505	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:160321505G>T	uc001fvx.2	+	7	877	c.753G>T	c.(751-753)CTG>CTT	p.L251L	NCSTN_uc001fvy.2_Silent_p.L231L|NCSTN_uc010pjf.1_Intron|NCSTN_uc001fvz.2_Silent_p.L31L|NCSTN_uc010pjg.1_5'UTR	NM_015331	NP_056146	Q92542	NICA_HUMAN	nicastrin precursor	251	Extracellular (Potential).				amyloid precursor protein catabolic process|apoptosis|induction of apoptosis by extracellular signals|membrane protein ectodomain proteolysis|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|positive regulation of catalytic activity|protein processing	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane|melanosome	protein binding			ovary(1)|lung(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GTGACCCCCTGTCTGATTACA	0.463													7	308					0.000978159	0.00917326	0.000978159	1	0
FCGR3A	2214	broad.mit.edu	37	1	161518234	161518234	+	Missense_Mutation	SNP	G	C	C	rs145557772		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:161518234G>C	uc001gat.3	-	4	433	c.296C>G	c.(295-297)CCG>CGG	p.P99R	FCGR3A_uc001gar.2_Missense_Mutation_p.P135R|FCGR3A_uc001gas.2_Missense_Mutation_p.P134R|FCGR3A_uc009wuh.2_Missense_Mutation_p.P98R|FCGR3A_uc009wui.2_Missense_Mutation_p.P99R	NM_001127595	NP_001121067	P08637	FCG3A_HUMAN	Fc fragment of IgG, low affinity IIIa, receptor	99	Ig-like C2-type 1.|Extracellular (Potential).				immune response|regulation of immune response	extracellular region|integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TAGCTGCACCGGGTCACTGAG	0.512													4	102					0	0	3.59834e-05	0	0
NUF2	83540	broad.mit.edu	37	1	163298659	163298659	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:163298659G>C	uc001gcq.1	+	5	599	c.299G>C	c.(298-300)CGG>CCG	p.R100P	NUF2_uc001gcp.2_Missense_Mutation_p.R100P|NUF2_uc001gcr.1_Missense_Mutation_p.R100P|NUF2_uc009wvc.1_Missense_Mutation_p.R100P	NM_145697	NP_663735	Q9BZD4	NUF2_HUMAN	NUF2, NDC80 kinetochore complex component	100	Interaction with the N-terminus of NDC80.				cell division|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			ovary(3)|skin(1)	4	all_hematologic(923;0.101)					CCTATCTGCCGGGTGAATGAC	0.348													4	85					0	0	0.000157383	0	0
RXRG	6258	broad.mit.edu	37	1	165377466	165377466	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:165377466G>T	uc001gda.2	-	8	1436	c.1136C>A	c.(1135-1137)CCA>CAA	p.P379Q		NM_006917	NP_008848	P48443	RXRG_HUMAN	retinoid X receptor, gamma isoform a	379	Ligand-binding (By similarity).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tretinoin(DB00755)	GCGGTTACCTGGGTTAAAGAG	0.517													7	79					2.0095e-06	2.53297e-05	8.12818e-05	1	0
MAEL	84944	broad.mit.edu	37	1	166987192	166987192	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:166987192A>G	uc001gdy.1	+	10	1108	c.1037A>G	c.(1036-1038)TAC>TGC	p.Y346C	MAEL_uc001gdz.1_Missense_Mutation_p.Y315C|MAEL_uc009wvf.1_RNA	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	346					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						GCAGGGCGTTACCAGGTAAGG	0.443													3	56					0	0	0.00024832	0	0
F5	2153	broad.mit.edu	37	1	169555508	169555508	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:169555508C>G	uc001ggg.1	-	1	262	c.117G>C	c.(115-117)CAG>CAC	p.Q39H	F5_uc010plr.1_RNA	NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	39	F5/8 type A 1.|Plastocyanin-like 1.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	AACTGATGCCCTGAGCAGCCA	0.572													4	46					0	0	0.00024832	0	0
GORAB	92344	broad.mit.edu	37	1	170501358	170501358	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:170501358C>A	uc001gha.2	+	1	96	c.69C>A	c.(67-69)CCC>CCA	p.P23P	GORAB_uc009wvw.2_Silent_p.P23P|GORAB_uc001ggz.3_Silent_p.P23P|GORAB_uc009wvx.2_5'UTR|GORAB_uc001ghb.2_5'UTR	NM_152281	NP_689494	Q5T7V8	GORAB_HUMAN	golgin, RAB6-interacting isoform a	23						Golgi apparatus|nucleus					0						GCCGGTGGCCCGGGCCGATGG	0.572													7	123					0.000274275	0.00290969	0.000274275	1	0
PIGC	5279	broad.mit.edu	37	1	172411585	172411585	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:172411585G>C	uc001gil.2	-	2	459	c.178C>G	c.(178-180)CAG>GAG	p.Q60E	PIGC_uc001gii.1_Intron|PIGC_uc001gij.1_Intron|C1orf105_uc001gik.2_Intron|PIGC_uc001gin.2_Missense_Mutation_p.Q60E|PIGC_uc001gio.2_Missense_Mutation_p.Q60E	NM_153747	NP_714969	Q92535	PIGC_HUMAN	phosphatidylinositol glycan, class C	60	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			lung(1)	1						CACAGCTGCTGGATCACCACA	0.493													5	179					0	0	0.000157383	0	0
C1orf9	51430	broad.mit.edu	37	1	172555063	172555063	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:172555063G>T	uc001giq.3	+	17	1949	c.1633G>T	c.(1633-1635)GTT>TTT	p.V545F	C1orf9_uc010pmm.1_Missense_Mutation_p.V545F|C1orf9_uc009wwd.2_Missense_Mutation_p.V501F|C1orf9_uc010pmn.1_Missense_Mutation_p.V508F|C1orf9_uc010pmo.1_Intron	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	545					multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		Atcaactcctgtttcaactcc	0.244													7	197					0.000442599	0.00445669	0.000442599	1	0
SLC9A11	284525	broad.mit.edu	37	1	173552678	173552678	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:173552678G>A	uc001giz.2	-	6	1030	c.607C>T	c.(607-609)CGG>TGG	p.R203W	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	203					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						CTGTTGCCCCGAAAATTTCCA	0.284													17	146					0	0	0.000175454	0	0
CENPL	91687	broad.mit.edu	37	1	173772407	173772407	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:173772407G>C	uc001gje.3	-	4	871	c.657C>G	c.(655-657)TCC>TCG	p.S219S	CENPL_uc009wwg.2_Silent_p.S93S|CENPL_uc001gjg.3_Silent_p.S265S|CENPL_uc001gjf.3_Silent_p.S219S	NM_033319	NP_201576	Q8N0S6	CENPL_HUMAN	centromere protein L isoform 2	219					mitotic prometaphase	chromosome, centromeric region|cytosol|nucleus					0						CAGCCATCCAGGAAAGATTAA	0.408													4	185					0	0	3.59834e-05	0	0
CENPL	91687	broad.mit.edu	37	1	173780288	173780288	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:173780288G>C	uc001gje.3	-	2	364	c.150C>G	c.(148-150)CCC>CCG	p.P50P	CENPL_uc009wwg.2_5'UTR|CENPL_uc001gjg.3_Silent_p.P50P|CENPL_uc001gjf.3_Silent_p.P50P	NM_033319	NP_201576	Q8N0S6	CENPL_HUMAN	centromere protein L isoform 2	50					mitotic prometaphase	chromosome, centromeric region|cytosol|nucleus					0						GCGAACACTGGGGAATTTTCC	0.388													4	160					0	0	0.000157383	0	0
SERPINC1	462	broad.mit.edu	37	1	173876605	173876605	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:173876605G>T	uc001gjt.2	-	6	1320	c.1201C>A	c.(1201-1203)CAT>AAT	p.H401N		NM_000488	NP_000479	P01008	ANT3_HUMAN	serpin peptidase inhibitor, clade C, member 1	401					blood coagulation|regulation of proteolysis	extracellular space|plasma membrane	heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(1)	1					Enoxaparin(DB01225)|Fondaparinux sodium(DB00569)|Heparin(DB01109)	AATGCCTTATGGAATGCATCT	0.483													13	212					0.000132079	0.00151915	0.000132079	1	0
GPR52	9293	broad.mit.edu	37	1	174418121	174418121	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:174418121G>C	uc001gka.1	+	1	910	c.872G>C	c.(871-873)CGG>CCG	p.R291P	RABGAP1L_uc001gjw.2_Intron|RABGAP1L_uc001gjx.2_Intron|RABGAP1L_uc001gjy.2_Intron|RABGAP1L_uc001gjz.2_Intron|uc010pmu.1_RNA	NM_005684	NP_005675	Q9Y2T5	GPR52_HUMAN	G protein-coupled receptor 52	291	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			skin(1)	1						GAAAGCTCCCGGGTCTTGGAC	0.418													5	220					0	0	0.000157383	0	0
TNR	7143	broad.mit.edu	37	1	175331854	175331854	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:175331854G>C	uc001gkp.1	-	12	2880	c.2799C>G	c.(2797-2799)CTC>CTG	p.L933L	TNR_uc009wwu.1_Silent_p.L933L	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	933	Fibronectin type-III 7.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GCACGCTGTTGAGGCTGATTT	0.552													3	96					0	0	3.59834e-05	0	0
TNR	7143	broad.mit.edu	37	1	175360543	175360543	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:175360543G>C	uc001gkp.1	-	5	1469	c.1388C>G	c.(1387-1389)CCC>CGC	p.P463R	TNR_uc009wwu.1_Missense_Mutation_p.P463R	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	463	Fibronectin type-III 2.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AACATCGCTGGGGACCTGAGC	0.512													4	50					0	0	0.000157383	0	0
TNR	7143	broad.mit.edu	37	1	175375605	175375605	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:175375605C>T	uc001gkp.1	-	1	327	c.246G>A	c.(244-246)GGG>GGA	p.G82G	TNR_uc009wwu.1_Silent_p.G82G|TNR_uc010pmz.1_Silent_p.G82G	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	82					axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AGGCCTCTAGCCCTGAGGAGC	0.552													14	116					0	0	0.000308642	0	0
ASTN1	460	broad.mit.edu	37	1	176913129	176913129	+	Missense_Mutation	SNP	C	G	G	rs12565542		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:176913129C>G	uc001glc.2	-	14	2487	c.2275G>C	c.(2275-2277)GAC>CAC	p.D759H	ASTN1_uc001glb.1_Missense_Mutation_p.D759H|ASTN1_uc001gld.1_Missense_Mutation_p.D759H|ASTN1_uc009wwx.1_Missense_Mutation_p.D759H	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	767					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						AGTTGCTGGTCTAAACCACGA	0.488													4	98					0	0	0.00024832	0	0
TDRD5	163589	broad.mit.edu	37	1	179600044	179600044	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:179600044C>T	uc001gnf.1	+	7	1365	c.1115C>T	c.(1114-1116)CCT>CTT	p.P372L	TDRD5_uc010pnp.1_Missense_Mutation_p.P372L|TDRD5_uc001gnh.1_5'UTR	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	372	Lotus/OST-HTH 3.				DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						GATAAGAAGCCTCTACCACCT	0.403													22	100					0	0	0.00047179	0	0
TOR1AIP1	26092	broad.mit.edu	37	1	179886868	179886868	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:179886868C>G	uc001gnq.2	+	10	1464	c.1246C>G	c.(1246-1248)CGA>GGA	p.R416G		NM_015602	NP_056417	Q5JTV8	TOIP1_HUMAN	lamina-associated polypeptide 1B	416	Lumenal (Potential).|Potential.					integral to membrane|nuclear inner membrane				breast(1)|central_nervous_system(1)	2						CACTGCTGCCCGAGATGCTGA	0.468													4	186					0	0	0.000157383	0	0
LHX4	89884	broad.mit.edu	37	1	180235663	180235663	+	Missense_Mutation	SNP	G	A	A	rs150875319	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:180235663G>A	uc001goe.1	+	3	608	c.385G>A	c.(385-387)GAA>AAA	p.E129K		NM_033343	NP_203129	Q969G2	LHX4_HUMAN	LIM homeobox protein 4	129	LIM zinc-binding 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						CACGGGGGACGAATTCTACCT	0.607													12	59					0	0	0.000151284	0	0
ACBD6	84320	broad.mit.edu	37	1	180382607	180382607	+	Splice_Site	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:180382607C>G	uc001gog.2	-	5	1089	c.468_splice	c.e5-1	p.R156_splice		NM_032360	NP_115736	Q9BR61	ACBD6_HUMAN	acyl-coenzyme A binding domain containing 6							cytoplasm|nucleus	fatty-acyl-CoA binding			ovary(1)	1						GTCTTCTTCCCTAGAATAAAA	0.308													4	116					0	0	0.00024832	0	0
DHX9	1660	broad.mit.edu	37	1	182836129	182836129	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:182836129G>C	uc001gpr.2	+	14	1671	c.1508G>C	c.(1507-1509)CGA>CCA	p.R503P	DHX9_uc001gps.2_Missense_Mutation_p.R289P	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	503	Helicase ATP-binding.				CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						GCAGGCATTCGAGGAATCAGT	0.308													4	374					0	0	3.59834e-05	0	0
SMG7	9887	broad.mit.edu	37	1	183511386	183511386	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:183511386C>G	uc001gqg.2	+	14	1713	c.1591C>G	c.(1591-1593)CGA>GGA	p.R531G	SMG7_uc010pob.1_Missense_Mutation_p.R560G|SMG7_uc001gqf.2_Missense_Mutation_p.R531G|SMG7_uc001gqh.2_Missense_Mutation_p.R531G|SMG7_uc001gqi.2_Missense_Mutation_p.R489G|SMG7_uc010poc.1_Missense_Mutation_p.R489G	NM_173156	NP_775179	Q92540	SMG7_HUMAN	SMG-7 homolog isoform 1	531					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|intermediate filament cytoskeleton|nucleus	protein phosphatase 2A binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						ATCTACAAGCCGAAATTTAAG	0.448													4	217					0	0	3.59834e-05	0	0
NCF2	4688	broad.mit.edu	37	1	183529292	183529292	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:183529292C>T	uc001gqj.3	-	14	1682	c.1407G>A	c.(1405-1407)GAG>GAA	p.E469E	NCF2_uc010pod.1_Silent_p.E424E|NCF2_uc010poe.1_Silent_p.E388E|NCF2_uc001gqk.3_Silent_p.E469E	NM_000433	NP_000424	P19878	NCF2_HUMAN	neutrophil cytosolic factor 2	469	SH3 2.				cellular defense response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex|nucleolus	electron carrier activity|protein C-terminus binding			ovary(3)	3						GTTGGGTAGCCTCATAACTGA	0.438													57	167					0	0	0.000781405	0	0
EDEM3	80267	broad.mit.edu	37	1	184701975	184701975	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:184701975G>T	uc010pok.1	-	6	869	c.608C>A	c.(607-609)CCA>CAA	p.P203Q	EDEM3_uc010pol.1_RNA|EDEM3_uc010pom.1_Missense_Mutation_p.P203Q|EDEM3_uc001gqy.2_Missense_Mutation_p.P126Q	NM_025191	NP_079467	Q9BZQ6	EDEM3_HUMAN	ER degradation enhancer, mannosidase alpha-like	203					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			skin(1)	1						ACTTACTCTTGGATAAGGAAG	0.368													7	82					7.48243e-07	9.56199e-06	0.000442599	1	0
RNF2	6045	broad.mit.edu	37	1	185069061	185069061	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:185069061C>A	uc001grc.1	+	6	1109	c.876C>A	c.(874-876)ACC>ACA	p.T292T	RNF2_uc001grd.1_Silent_p.T220T|RNF2_uc001gre.1_RNA	NM_007212	NP_009143	Q99496	RING2_HUMAN	ring finger protein 2	292					histone H2A monoubiquitination|transcription, DNA-dependent	MLL1 complex|PcG protein complex|ubiquitin ligase complex	RING-like zinc finger domain binding|zinc ion binding			breast(1)	1		Breast(1374;0.000496)		Colorectal(1306;6.9e-08)|KIRC - Kidney renal clear cell carcinoma(1967;8.12e-06)		AGCAGTATACCATTTATATAG	0.418													11	185					0.000673444	0.00655963	0.000673444	1	0
C1orf26	54823	broad.mit.edu	37	1	185144099	185144099	+	Missense_Mutation	SNP	C	A	A	rs146664882	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:185144099C>A	uc001grg.3	+	5	934	c.820C>A	c.(820-822)CAG>AAG	p.Q274K	C1orf26_uc001grh.3_Missense_Mutation_p.Q274K	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	274											0						GGAAAGCTCCCAGGTTTCATT	0.368													9	184					0.000274275	0.00290969	0.000274275	1	0
IVNS1ABP	10625	broad.mit.edu	37	1	185269201	185269201	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:185269201T>C	uc001grl.2	-	13	2054	c.1431A>G	c.(1429-1431)AAA>AAG	p.K477K	IVNS1ABP_uc001gri.2_Silent_p.K137K|IVNS1ABP_uc001grj.2_Silent_p.K137K|IVNS1ABP_uc009wyj.2_Silent_p.K259K|IVNS1ABP_uc009wyk.2_RNA|IVNS1ABP_uc001grm.2_Silent_p.K137K	NM_006469	NP_006460	Q9Y6Y0	NS1BP_HUMAN	influenza virus NS1A binding protein	477	Kelch 3.				interspecies interaction between organisms|response to virus|RNA splicing|transcription from RNA polymerase III promoter	cytoplasm|cytoskeleton|spliceosomal complex|transcription factor complex				ovary(4)|central_nervous_system(1)	5						TTTTCAGTCCTTTTTGACCAT	0.323													4	67					0	0	0.00024832	0	0
HMCN1	83872	broad.mit.edu	37	1	186158700	186158700	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:186158700C>T	uc001grq.1	+	107	16827	c.16598C>T	c.(16597-16599)GCC>GTC	p.A5533V	HMCN1_uc001grs.1_Missense_Mutation_p.A985V	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	5533					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AGCCCATATGCCTTGGAATAC	0.448													8	68					0	0	0.000442599	0	0
PRG4	10216	broad.mit.edu	37	1	186276564	186276565	+	Missense_Mutation	DNP	CA	TG	TG			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:186276564_186276565CA>TG	uc001gru.3	+	7	1764_1765	c.1713_1714CA>TG	c.(1711-1716)ACCACC>ACTGCC	p.T572A	PRG4_uc001grt.3_Missense_Mutation_p.T531A|PRG4_uc009wyl.2_Missense_Mutation_p.T479A|PRG4_uc009wym.2_Missense_Mutation_p.T438A|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	572	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|29.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CTGCACCCACCACCCCCAAGAA	0.644													9	117					0	0	6.4e-05	0	0
C1orf27	54953	broad.mit.edu	37	1	186368140	186368140	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:186368140G>C	uc001grw.2	+	11	1200	c.964G>C	c.(964-966)GAG>CAG	p.E322Q	C1orf27_uc010poq.1_Missense_Mutation_p.E299Q|C1orf27_uc010por.1_Missense_Mutation_p.E290Q|OCLM_uc001gry.2_5'Flank	NM_017847	NP_060317	Q5SWX8	ODR4_HUMAN	odorant response abnormal 4 isoform 1	322						integral to membrane	oxidoreductase activity|zinc ion binding			ovary(1)	1						AATGCTATTTGAGGATCTGCT	0.299													3	97					0	0	0.00024832	0	0
CDC73	79577	broad.mit.edu	37	1	193107257	193107257	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:193107257C>G	uc001gtb.2	+	6	709	c.466C>G	c.(466-468)CGT>GGT	p.R156G		NM_024529	NP_078805	Q6P1J9	CDC73_HUMAN	parafibromin	156					cell cycle|histone H2B ubiquitination|histone monoubiquitination|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			parathyroid(46)|ovary(1)|breast(1)|pancreas(1)	49						ATTGGCTGCCCGTTTGGAGGG	0.343									Hyperparathyroidism_Familial_Isolated|Hyperparathyroidism-Jaw_Tumor_Syndrome				6	177					0	0	0.000442599	0	0
CFH	3075	broad.mit.edu	37	1	196715007	196715007	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:196715007C>G	uc001gtj.3	+	21	3611	c.3371C>G	c.(3370-3372)CCG>CGG	p.P1124R		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	1124	Sushi 19.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						ACTTCATTCCCGTTGTCAGTA	0.413													4	173					0	0	0.00024832	0	0
CRB1	23418	broad.mit.edu	37	1	197404013	197404013	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:197404013G>A	uc001gtz.2	+	9	3155	c.3020G>A	c.(3019-3021)AGA>AAA	p.R1007K	CRB1_uc010poz.1_Missense_Mutation_p.R983K|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.R895K|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.R488K|CRB1_uc001gub.1_Missense_Mutation_p.R656K	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1007	Extracellular (Potential).|Laminin G-like 3.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CAAGATTCCAGATTATTCTTT	0.368													8	94					0	0	0.000157383	0	0
KIF21B	23046	broad.mit.edu	37	1	200943844	200943844	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:200943844G>T	uc001gvs.1	-	34	5129	c.4812C>A	c.(4810-4812)TCC>TCA	p.S1604S	KIF21B_uc001gvr.1_Silent_p.S1591S|KIF21B_uc009wzl.1_Silent_p.S1604S|KIF21B_uc010ppn.1_Silent_p.S1591S	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1604	WD 7.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GCACCCACCTGGAGGCTGTGA	0.602													7	98					0.000274275	0.00290969	0.000274275	1	0
KIF21B	23046	broad.mit.edu	37	1	200960210	200960210	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:200960210G>A	uc001gvs.1	-	18	2839	c.2522C>T	c.(2521-2523)CCA>CTA	p.P841L	KIF21B_uc001gvr.1_Missense_Mutation_p.P841L|KIF21B_uc009wzl.1_Missense_Mutation_p.P841L|KIF21B_uc010ppn.1_Missense_Mutation_p.P841L	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	841					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CAGCATGGGTGGCTTTAGTCC	0.642													6	71					0	0	0.000442599	0	0
KIF21B	23046	broad.mit.edu	37	1	200969622	200969622	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:200969622C>A	uc001gvs.1	-	11	1898	c.1581G>T	c.(1579-1581)GGG>GGT	p.G527G	KIF21B_uc001gvr.1_Silent_p.G527G|KIF21B_uc009wzl.1_Silent_p.G527G|KIF21B_uc010ppn.1_Silent_p.G527G	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	527	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CAGGGCTGCCCCCGAAGGCCG	0.672													7	86					8.12818e-05	0.000938396	8.12818e-05	1	0
CACNA1S	779	broad.mit.edu	37	1	201028386	201028386	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:201028386G>A	uc001gvv.2	-	27	3683	c.3456C>T	c.(3454-3456)ATC>ATT	p.I1152I		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1152	IV.|Extracellular (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CCACATTGAGGATGTCTGAGA	0.582													6	57					0	0	0.000157383	0	0
LMOD1	25802	broad.mit.edu	37	1	201869777	201869777	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:201869777C>T	uc001gxb.2	-	2	612	c.364G>A	c.(364-366)GGG>AGG	p.G122R	LMOD1_uc010ppu.1_Intron	NM_012134	NP_036266	P29536	LMOD1_HUMAN	leiomodin 1 (smooth muscle)	122					muscle contraction	cytoskeleton|cytosol|membrane fraction	tropomyosin binding			ovary(1)|pancreas(1)|skin(1)	3						GGCTCCTTCCCCAGATCTGAG	0.527													29	182					0	0	0.000279167	0	0
LGR6	59352	broad.mit.edu	37	1	202276531	202276531	+	Splice_Site	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:202276531T>C	uc001gxu.2	+	14	1280	c.1280_splice	c.e14+2	p.L427_splice	LGR6_uc001gxv.2_Splice_Site_p.L375_splice|LGR6_uc009xab.2_Splice_Site|LGR6_uc001gxw.2_Splice_Site_p.L288_splice	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled							integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						GGTCAAGCTGTAAGTGCCTGC	0.617													3	54					0	0	0.00024832	0	0
PPP1R12B	4660	broad.mit.edu	37	1	202531986	202531986	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:202531986G>C	uc001gya.1	+	20	2732	c.2588G>C	c.(2587-2589)CGG>CCG	p.R863P	PPP1R12B_uc001gxz.1_Missense_Mutation_p.R863P|PPP1R12B_uc001gyb.1_Missense_Mutation_p.R89P|PPP1R12B_uc001gyc.1_Missense_Mutation_p.R89P	NM_002481	NP_002472	O60237	MYPT2_HUMAN	protein phosphatase 1, regulatory (inhibitor)	863					regulation of muscle contraction|signal transduction	cytoplasm	enzyme activator activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(75;0.166)			CGGGAGGCCCGGGAGGCCCGC	0.498													4	117					0	0	0.00024832	0	0
KDM5B	10765	broad.mit.edu	37	1	202698864	202698864	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:202698864C>A	uc001gyf.2	-	26	4584	c.4468G>T	c.(4468-4470)GTG>TTG	p.V1490L	KDM5B_uc009xag.2_Missense_Mutation_p.V1526L|KDM5B_uc001gyg.1_Missense_Mutation_p.V1332L	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	1490	PHD-type 3.				negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						AGGCAGCTCACAGCTGGGCAG	0.502													6	91					0.000274275	0.00290969	0.000274275	1	0
KDM5B	10765	broad.mit.edu	37	1	202702639	202702639	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:202702639G>T	uc001gyf.2	-	23	3915	c.3799C>A	c.(3799-3801)CAG>AAG	p.Q1267K	KDM5B_uc009xag.2_Missense_Mutation_p.Q1303K|KDM5B_uc001gyg.1_Missense_Mutation_p.Q1109K	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	1267					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						AGCAGTTGCTGGGCTCTGTGC	0.522													7	146					0.000274275	0.00290969	0.000274275	1	0
KDM5B	10765	broad.mit.edu	37	1	202746165	202746165	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:202746165G>C	uc001gyf.2	-	2	378	c.262C>G	c.(262-264)CAG>GAG	p.Q88E	KDM5B_uc009xag.2_Missense_Mutation_p.Q88E|KDM5B_uc001gyg.1_5'UTR	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	88					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						TTCAGTCTCTGGATACGTGGC	0.368													5	211					0	0	0.000157383	0	0
KLHL12	59349	broad.mit.edu	37	1	202862510	202862510	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:202862510C>A	uc001gyo.1	-	11	1637	c.1437G>T	c.(1435-1437)GGG>GGT	p.G479G	KLHL12_uc001gym.1_Intron|KLHL12_uc001gyn.1_Intron|KLHL12_uc010pqc.1_Silent_p.G517G|KLHL12_uc009xah.1_Silent_p.G378G	NM_021633	NP_067646	Q53G59	KLH12_HUMAN	kelch-like 12	479	Interaction with DVL3.|Kelch 5.				Wnt receptor signaling pathway		protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.166)			CATCAAATCCCCCCACCACAT	0.453													9	135					3.86212e-05	0.000457303	0.000673444	1	0
TMEM183A	92703	broad.mit.edu	37	1	202992003	202992003	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:202992003G>C	uc001gyu.1	+	8	1024	c.966G>C	c.(964-966)ACG>ACC	p.T322T	TMEM183A_uc001gyv.1_RNA|TMEM183A_uc001gyw.1_Silent_p.T321T|TMEM183A_uc001gyx.1_Missense_Mutation_p.G319R|TMEM183A_uc001gyy.2_5'Flank	NM_001079809	NP_001073277	Q8IXX5	T183A_HUMAN	transmembrane protein 183B	322						integral to membrane					0			BRCA - Breast invasive adenocarcinoma(75;0.18)			ATGTGAGCACGGACATGCGGC	0.473													4	208					0	0	0.000978159	0	0
ADORA1	134	broad.mit.edu	37	1	203098183	203098183	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:203098183G>T	uc001gze.1	+	3	647	c.214G>T	c.(214-216)GGG>TGG	p.G72W	ADORA1_uc001gzf.1_Missense_Mutation_p.G72W|ADORA1_uc010pqg.1_5'UTR|ADORA1_uc009xak.1_5'UTR|ADORA1_uc010pqh.1_Missense_Mutation_p.G105W	NM_000674	NP_000665	P30542	AA1R_HUMAN	adenosine A1 receptor	72	Extracellular (Potential).				induction of apoptosis by extracellular signals|inflammatory response|nervous system development|phagocytosis	integral to plasma membrane				large_intestine(1)	1					Aminophylline(DB01223)|Caffeine(DB00201)|Defibrotide(DB04932)|Gabapentin(DB00996)|Imipramine(DB00458)|Pegademase bovine(DB00061)|Theophylline(DB00277)	CATCAACATTGGGCCACAGAC	0.632													9	166					0.000442599	0.00445669	0.000442599	1	0
CHIT1	1118	broad.mit.edu	37	1	203191393	203191393	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:203191393C>A	uc001gzn.2	-	7	762	c.666G>T	c.(664-666)ACG>ACT	p.T222T	FMOD_uc010pqi.1_Intron|CHIT1_uc001gzm.1_RNA|CHIT1_uc009xal.1_Silent_p.T13T|CHIT1_uc009xam.1_RNA|CHIT1_uc009xan.1_RNA|CHIT1_uc001gzo.2_Silent_p.T213T	NM_003465	NP_003456	Q13231	CHIT1_HUMAN	chitotriosidase precursor	222					chitin catabolic process|immune response|response to bacterium	extracellular space|lysosome	cation binding|chitin binding|endochitinase activity				0						TGTTATGTCCCGTGACCTTCT	0.562													6	58					3.59834e-05	0.000429	3.59834e-05	1	0
LAX1	54900	broad.mit.edu	37	1	203740494	203740494	+	Splice_Site	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:203740494G>C	uc001haa.2	+	3	610	c.200_splice	c.e3-1	p.R67_splice	LAX1_uc010pql.1_Splice_Site_p.R51_splice|LAX1_uc001hab.2_Splice_Site	NM_017773	NP_060243	Q8IWV1	LAX1_HUMAN	lymphocyte transmembrane adaptor 1 isoform a						B cell activation|immune response|inactivation of MAPK activity|intracellular signal transduction|negative regulation of T cell activation	Golgi apparatus|integral to membrane|plasma membrane	protein kinase binding|SH2 domain binding			central_nervous_system(2)	2	all_cancers(21;0.0915)		BRCA - Breast invasive adenocarcinoma(75;0.109)			TTGCCTTGCAGGACAAGTTCC	0.507													5	288					0	0	8.12818e-05	0	0
ZC3H11A	9877	broad.mit.edu	37	1	203786249	203786249	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:203786249C>A	uc001hac.2	+	5	667	c.51C>A	c.(49-51)ACC>ACA	p.T17T	ZC3H11A_uc001had.2_Silent_p.T17T|ZC3H11A_uc001hae.2_Silent_p.T17T|ZC3H11A_uc001haf.2_Silent_p.T17T|ZC3H11A_uc010pqm.1_Intron|ZC3H11A_uc001hag.1_Silent_p.T17T	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	17	C3H1-type 1.						nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			CCACATGTACCAAAGTAAGAA	0.313													7	175					0.000274275	0.00290969	0.000274275	1	0
ZC3H11A	9877	broad.mit.edu	37	1	203809456	203809457	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:203809456_203809457GG>TT	uc001hac.2	+	14	1612_1613	c.996_997GG>TT	c.(994-999)AAGGAG>AATTAG	p.332_333KE>N*	ZC3H11A_uc001had.2_Nonsense_Mutation_p.332_333KE>N*|ZC3H11A_uc001hae.2_Nonsense_Mutation_p.332_333KE>N*|ZC3H11A_uc001haf.2_Nonsense_Mutation_p.332_333KE>N*|ZC3H11A_uc010pqm.1_Nonsense_Mutation_p.278_279KE>N*|ZC3H11A_uc001hag.1_Nonsense_Mutation_p.332_333KE>N*	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	332_333							nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			AGTCTCTTAAGGAGCGATTAGG	0.332													10	323					0	0	6.4e-05	0	0
SNRPE	6635	broad.mit.edu	37	1	203834233	203834233	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:203834233C>A	uc001hai.2	+	4	257	c.209C>A	c.(208-210)TCA>TAA	p.S70*	SNRPE_uc010pqn.1_RNA	NM_003094	NP_003085	P62304	RUXE_HUMAN	small nuclear ribonucleoprotein polypeptide E	70					histone mRNA metabolic process|ncRNA metabolic process|spliceosomal snRNP assembly|spliceosome assembly|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nucleoplasm|U12-type spliceosomal complex|U7 snRNP	protein binding|RNA binding				0	all_cancers(21;0.103)		BRCA - Breast invasive adenocarcinoma(75;0.109)			AAAACAAAGTCAAGAAAACAA	0.318													8	243					0.000442599	0.00445669	0.000442599	1	0
ELK4	2005	broad.mit.edu	37	1	205589490	205589490	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:205589490C>G	uc001hcy.1	-	3	1934	c.684G>C	c.(682-684)TTG>TTC	p.L228F	ELK4_uc001hcz.2_Missense_Mutation_p.L228F	NM_001973	NP_001964	P28324	ELK4_HUMAN	ELK4 protein isoform a	228						cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity				0	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			TTGGGGAAACCAATGTCTCCA	0.493			T	SLC45A3	prostate								4	198					0	0	3.59834e-05	0	0
NUCKS1	64710	broad.mit.edu	37	1	205687595	205687595	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:205687595G>A	uc001hdb.2	-	7	805	c.545C>T	c.(544-546)CCA>CTA	p.P182L		NM_022731	NP_073568	Q9H1E3	NUCKS_HUMAN	nuclear casein kinase and cyclin-dependent	182	Lys-rich.					nucleus					0	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			GCCTTTCACTGGACTTGGCGT	0.413													38	149					0	0	0.00111076	0	0
IKBKE	9641	broad.mit.edu	37	1	206649608	206649608	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:206649608A>G	uc001hdz.1	+	6	811	c.443A>G	c.(442-444)GAG>GGG	p.E148G	IKBKE_uc009xbu.1_Missense_Mutation_p.E148G|IKBKE_uc009xbv.1_Missense_Mutation_p.E148G|IKBKE_uc001hea.1_Missense_Mutation_p.E63G	NM_014002	NP_054721	Q14164	IKKE_HUMAN	IKK-related kinase epsilon	148	Protein kinase.				DNA damage response, signal transduction resulting in induction of apoptosis|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane|PML body	ATP binding|IkappaB kinase activity|NF-kappaB-inducing kinase activity|protein binding			ovary(3)|lung(3)|central_nervous_system(1)|skin(1)	8	Breast(84;0.137)					GTAGGGGAGGAGGGGCAGAGC	0.612													3	82					0	0	6.4e-05	0	0
DYRK3	8444	broad.mit.edu	37	1	206822262	206822262	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:206822262C>A	uc001hej.2	+	3	1887	c.1719C>A	c.(1717-1719)ACC>ACA	p.T573T	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Silent_p.T553T	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	573					erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			TGTCAGAAACCAATGGTAGTA	0.403													7	127					5.4927e-09	7.26362e-08	0.000274275	1	0
MAPKAPK2	9261	broad.mit.edu	37	1	206905958	206905958	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:206905958C>G	uc001hem.1	+	10	1384	c.1098C>G	c.(1096-1098)GAC>GAG	p.D366E	MAPKAPK2_uc001hel.1_3'UTR	NM_032960	NP_116584	P49137	MAPK2_HUMAN	mitogen-activated protein kinase-activated	366					activation of MAPK activity|hormone biosynthetic process|innate immune response|leukotriene biosynthetic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|prostanoid metabolic process|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.211)			TGCGCGTTGACTACGAGCAGA	0.577													3	137					0	0	0.000602214	0	0
CD55	1604	broad.mit.edu	37	1	207495859	207495859	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:207495859C>A	uc001hfq.3	+	2	527	c.233C>A	c.(232-234)TCA>TAA	p.S78*	CD55_uc001hfp.3_Nonsense_Mutation_p.S78*|CD55_uc001hfr.3_Nonsense_Mutation_p.S78*|CD55_uc010psf.1_RNA|CD55_uc009xcf.2_Nonsense_Mutation_p.S78*|CD55_uc009xce.2_Nonsense_Mutation_p.S78*	NM_000574	NP_000565	P08174	DAF_HUMAN	decay accelerating factor for complement isoform	78	Sushi 1.				complement activation, classical pathway|elevation of cytosolic calcium ion concentration|innate immune response|respiratory burst	anchored to membrane|extracellular region|integral to plasma membrane|membrane raft|soluble fraction	receptor activity			ovary(1)	1					Chloramphenicol(DB00446)	GAGAAGGACTCAGTGATCTGC	0.423													9	110					0.000151284	0.00173001	0.000151284	1	0
CR2	1380	broad.mit.edu	37	1	207640102	207640102	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:207640102C>T	uc001hfw.2	+	2	384	c.290C>T	c.(289-291)CCA>CTA	p.P97L	CR2_uc001hfv.2_Missense_Mutation_p.P97L|CR2_uc009xch.2_Missense_Mutation_p.P97L	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	97	Sushi 2.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						CCCATAGTACCAGGAGGATAC	0.398													9	70					0	0	0.000442599	0	0
CR1L	1379	broad.mit.edu	37	1	207818628	207818628	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:207818628C>G	uc001hga.3	+	1	171	c.50C>G	c.(49-51)CCT>CGT	p.P17R	CR1L_uc001hfz.2_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	17						cytoplasm|extracellular region|membrane					0						CGGCGCTTTCCTGGGTTGCTT	0.662													4	119					0	0	3.59834e-05	0	0
C1orf107	27042	broad.mit.edu	37	1	210006683	210006683	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:210006683C>A	uc001hhr.1	+	4	618	c.542C>A	c.(541-543)TCT>TAT	p.S181Y	C1orf107_uc009xcu.1_5'UTR	NM_014388	NP_055203	Q68CQ4	DIEXF_HUMAN	digestive-organ expansion factor homolog	181					multicellular organismal development	nucleus					0				OV - Ovarian serous cystadenocarcinoma(81;0.0367)		GGAGACAACTCTTCTTTGAAA	0.413													7	108					0.000978159	0.00917326	0.000978159	1	0
RD3	343035	broad.mit.edu	37	1	211652404	211652404	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:211652404C>T	uc001him.2	-	3	1726	c.562G>A	c.(562-564)GAA>AAA	p.E188K	RD3_uc001hin.2_RNA|RD3_uc009xda.2_RNA	NM_183059	NP_898882	Q7Z3Z2	RD3_HUMAN	retinal degeneration 3	188					response to stimulus|visual perception					ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.00284)|all cancers(67;0.0279)|Epithelial(68;0.0689)		GCCCGGAATTCGGGCATGCTC	0.706													5	18					0	0	3.59834e-05	0	0
NEK2	4751	broad.mit.edu	37	1	211846961	211846961	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:211846961C>A	uc001hir.1	-	3	565	c.419G>T	c.(418-420)CGG>CTG	p.R140L	NEK2_uc001hiq.1_Missense_Mutation_p.R140L|NEK2_uc001his.3_Missense_Mutation_p.R140L|NEK2_uc001hit.1_RNA	NM_002497	NP_002488	P51955	NEK2_HUMAN	NIMA-related kinase 2	140	Protein kinase.				cell division|centrosome separation|G2/M transition of mitotic cell cycle|meiosis|protein autophosphorylation|regulation of mitosis	centrosome|condensed chromosome kinetochore|cytosol|nucleolus	ATP binding|metal ion binding|protein binding|protein phosphatase binding|protein serine/threonine kinase activity			breast(2)|stomach(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.00203)|all cancers(67;0.0339)|Epithelial(68;0.0546)		TTTCAGATCCCGATGCAATAC	0.453													5	142					0.000157383	0.00173811	0.000157383	1	0
KCNK2	3776	broad.mit.edu	37	1	215368405	215368406	+	Silent	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:215368405_215368406CC>AA	uc001hkq.2	+	6	1102_1103	c.933_934CC>AA	c.(931-936)CTCCGA>CTAAGA	p.311_312LR>LR	KCNK2_uc001hko.2_Silent_p.307_308LR>LR|KCNK2_uc009xdm.2_RNA|KCNK2_uc001hkp.2_RNA|KCNK2_uc010pua.1_RNA|KCNK2_uc001hkr.3_Silent_p.296_297LR>LR	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	311_312	Cytoplasmic (Potential).						outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	GAGATTGGCTCCGAGTGATATC	0.347													8	240					0	0	6.4e-05	0	0
GPATCH2	55105	broad.mit.edu	37	1	217793656	217793656	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:217793656G>C	uc001hlf.1	-	2	338	c.242C>G	c.(241-243)CCG>CGG	p.P81R	GPATCH2_uc001hlg.3_Missense_Mutation_p.P81R	NM_018040	NP_060510	Q9NW75	GPTC2_HUMAN	G patch domain containing 2	81						intracellular	nucleic acid binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0397)|all cancers(67;0.0744)|GBM - Glioblastoma multiforme(131;0.0872)		AGTCTCCCACGGGTGATGCAC	0.438													4	113					0	0	3.59834e-05	0	0
HHIPL2	79802	broad.mit.edu	37	1	222696997	222696997	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:222696997G>C	uc001hnh.1	-	8	1903	c.1845C>G	c.(1843-1845)CCC>CCG	p.P615P		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	615					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		TGGTTCTCACGGGCACTGGCT	0.527													4	328					0	0	3.59834e-05	0	0
MIA3	375056	broad.mit.edu	37	1	222803135	222803135	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:222803135C>G	uc001hnl.2	+	4	2582	c.2573C>G	c.(2572-2574)CCT>CGT	p.P858R	MIA3_uc009xea.1_Missense_Mutation_p.P694R	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	858	Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		AACGACAACCCTGAGGAACAT	0.438													7	399					0	0	8.12818e-05	0	0
MIA3	375056	broad.mit.edu	37	1	222803493	222803493	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:222803493G>T	uc001hnl.2	+	4	2940	c.2931G>T	c.(2929-2931)AAG>AAT	p.K977N	MIA3_uc009xea.1_Missense_Mutation_p.K813N	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	977	Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		TCCTAGATAAGGTCTTCCGTG	0.423													11	471					9.31168e-06	0.000114714	0.000151284	1	0
MIA3	375056	broad.mit.edu	37	1	222818929	222818930	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:222818929_222818930GG>TT	uc001hnl.2	+	7	3520_3521	c.3511_3512GG>TT	c.(3511-3513)GGG>TTG	p.G1171L	MIA3_uc009xea.1_Missense_Mutation_p.G1007L|MIA3_uc001hnm.2_Missense_Mutation_p.G49L	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	1171	Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		TGTTCAGCCTGGGCCTGATTTT	0.366													13	673					0	0	6.4e-05	0	0
C1orf58	148362	broad.mit.edu	37	1	222898812	222898812	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:222898812C>G	uc001hnq.1	+	7	890	c.495C>G	c.(493-495)CTC>CTG	p.L165L	C1orf58_uc010put.1_Silent_p.L133L|C1orf58_uc010puu.1_Silent_p.L165L|C1orf58_uc010puv.1_Silent_p.L133L	NM_144695	NP_653296	Q5VW32	BROX_HUMAN	Bro1-domain-containing protein	165	BRO1.					membrane					0				GBM - Glioblastoma multiforme(131;0.0667)		TCCCAAAACTCATTACACCTG	0.353													4	504					0	0	3.59834e-05	0	0
C1orf58	148362	broad.mit.edu	37	1	222900545	222900546	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:222900545_222900546CC>AA	uc001hnq.1	+	8	1011_1012	c.616_617CC>AA	c.(616-618)CCT>AAT	p.P206N	C1orf58_uc010put.1_Missense_Mutation_p.P174N|C1orf58_uc010puu.1_Missense_Mutation_p.P206N|C1orf58_uc010puv.1_Missense_Mutation_p.P174N|uc001hnr.1_RNA	NM_144695	NP_653296	Q5VW32	BROX_HUMAN	Bro1-domain-containing protein	206	BRO1.					membrane					0				GBM - Glioblastoma multiforme(131;0.0667)		AAAACATGCTCCTGGACTAATT	0.332													11	501					0	0	6.4e-05	0	0
DISP1	84976	broad.mit.edu	37	1	223168257	223168257	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:223168257C>A	uc001hnu.1	+	7	1067	c.920C>A	c.(919-921)TCA>TAA	p.S307*		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	307					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		GTATTTACTTCATCTGGAGGG	0.318													14	427					1.85244e-09	2.4579e-08	0.00047179	1	0
DISP1	84976	broad.mit.edu	37	1	223168266	223168266	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:223168266G>C	uc001hnu.1	+	7	1076	c.929G>C	c.(928-930)GGG>GCG	p.G310A		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	310					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		TCATCTGGAGGGGAGACATTA	0.308													8	386					0	0	0.000151284	0	0
DISP1	84976	broad.mit.edu	37	1	223176655	223176655	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:223176655C>A	uc001hnu.1	+	8	2063	c.1916C>A	c.(1915-1917)ACA>AAA	p.T639K		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	639	Helical; (Potential).|SSD.				diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		TATGCGGGGACAGCTATATTG	0.428													10	484					1.08611e-07	1.41337e-06	0.000978159	1	0
DISP1	84976	broad.mit.edu	37	1	223176758	223176759	+	Missense_Mutation	DNP	CC	AA	AA	rs150357097		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:223176758_223176759CC>AA	uc001hnu.1	+	8	2166_2167	c.2019_2020CC>AA	c.(2017-2022)CCCCAG>CCAAAG	p.Q674K		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	674					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		TCAAAAAGCCCCAGCAGCAAAT	0.411													9	383					0	0	6.4e-05	0	0
TMEM63A	9725	broad.mit.edu	37	1	226062007	226062007	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:226062007G>C	uc001hpm.1	-	4	497	c.247C>G	c.(247-249)CTG>GTG	p.L83V	TMEM63A_uc010pvi.1_Missense_Mutation_p.L83V	NM_014698	NP_055513	O94886	TM63A_HUMAN	transmembrane protein 63A	83						integral to membrane|lysosomal membrane	nucleotide binding			ovary(1)|breast(1)	2	Breast(184;0.197)					TCTGACACCAGGGCAATGCGG	0.299													4	118					0	0	0.00024832	0	0
LIN9	286826	broad.mit.edu	37	1	226420839	226420839	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:226420839G>T	uc001hqa.2	-	14	1839	c.1529C>A	c.(1528-1530)TCA>TAA	p.S510*	LIN9_uc001hqb.2_Nonsense_Mutation_p.S475*|LIN9_uc001hqc.2_Nonsense_Mutation_p.S442*|LIN9_uc009xel.1_Nonsense_Mutation_p.S475*	NM_173083	NP_775106	Q5TKA1	LIN9_HUMAN	lin-9 homolog	494					cell cycle|DNA replication	nucleoplasm					0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.131)		ATCATTTAATGAGTCTGTAAG	0.303													9	254					0.000219431	0.00241088	0.000219431	1	0
PRSS38	339501	broad.mit.edu	37	1	228033728	228033728	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:228033728G>A	uc001hrh.2	+	5	800	c.800G>A	c.(799-801)CGA>CAA	p.R267Q		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	267	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						AGCTGGGGCCGAGGCTGCTCC	0.512													14	65					0	0	0.000151284	0	0
OBSCN	84033	broad.mit.edu	37	1	228563785	228563785	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:228563785C>A	uc009xez.1	+	99	22907	c.22863C>A	c.(22861-22863)ACC>ACA	p.T7621T	OBSCN_uc001hsr.1_Silent_p.T2250T	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	7621	Fibronectin type-III 4.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GGGGTGGCACCTACACCTTCC	0.652													6	97					2.17888e-05	0.000264662	0.000442599	1	0
RHOU	58480	broad.mit.edu	37	1	228879182	228879182	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:228879182C>T	uc001htf.2	+	3	1093	c.472C>T	c.(472-474)CTA>TTA	p.L158L		NM_021205	NP_067028	Q7L0Q8	RHOU_HUMAN	ras homolog gene family, member U	158					regulation of small GTPase mediated signal transduction	cell projection|cytosol|focal adhesion|Golgi membrane|podosome	GTP binding|metal ion binding|protein binding				0	Breast(184;0.162)	Prostate(94;0.183)				CCCCATCATCCTAGTTGGAAC	0.527													28	170					0	0	0.000720815	0	0
C1orf131	128061	broad.mit.edu	37	1	231362487	231362487	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:231362487G>C	uc001hun.1	-	5	728	c.691C>G	c.(691-693)CTG>GTG	p.L231V	C1orf131_uc001hul.2_Missense_Mutation_p.L231V|C1orf131_uc001hum.2_Missense_Mutation_p.L230V|C1orf131_uc010pwd.1_Missense_Mutation_p.L230V	NM_152379	NP_689592	Q8NDD1	CA131_HUMAN	hypothetical protein LOC128061	231	Lys-rich.									central_nervous_system(1)|skin(1)	2	Breast(184;0.0871)	all_cancers(173;0.2)|Prostate(94;0.183)				ACACCTACCAGTCTCTTTTCT	0.413													4	229					0	0	3.59834e-05	0	0
PCNXL2	80003	broad.mit.edu	37	1	233152749	233152749	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:233152749G>C	uc001hvl.2	-	27	4992	c.4757C>G	c.(4756-4758)CCG>CGG	p.P1586R	PCNXL2_uc001hvk.1_Missense_Mutation_p.P238R|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1586						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				CTGGAGACACGGGACGTAGTC	0.473													4	169					0	0	8.12818e-05	0	0
PCNXL2	80003	broad.mit.edu	37	1	233353800	233353800	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:233353800T>C	uc001hvl.2	-	11	2870	c.2635A>G	c.(2635-2637)AGC>GGC	p.S879G	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA|PCNXL2_uc001hvq.1_Missense_Mutation_p.S178G	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	879	Helical; (Potential).					integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				TACTGGCAGCTGGCCATGACG	0.473													3	25					0	0	6.4e-05	0	0
TARBP1	6894	broad.mit.edu	37	1	234546208	234546208	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:234546208G>T	uc001hwd.2	-	23	3775	c.3775C>A	c.(3775-3777)CAA>AAA	p.Q1259K		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	1259					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			GGAATATTTTGAGTAATAATG	0.244													12	308					1.49906e-05	0.00018321	0.000219431	1	0
GNG4	2786	broad.mit.edu	37	1	235747058	235747058	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:235747058G>A	uc001hxe.3	-	3	535	c.81C>T	c.(79-81)GCC>GCT	p.A27A	GNG4_uc009xfz.2_Silent_p.A27A|GNG4_uc001hxh.3_Silent_p.A27A	NM_001098722	NP_001092192	P50150	GBG4_HUMAN	guanine nucleotide binding protein (G protein),	27					cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|negative regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	heterotrimeric G-protein complex	signal transducer activity				0	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00168)|Prostate(94;0.0776)|Acute lymphoblastic leukemia(190;0.23)	OV - Ovarian serous cystadenocarcinoma(106;0.000882)			TGTCCATACAGGCTTCCATCT	0.517													12	113					0	0	0.00010058	0	0
LYST	1130	broad.mit.edu	37	1	235929509	235929509	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:235929509T>C	uc001hxj.2	-	21	6166	c.5991A>G	c.(5989-5991)GCA>GCG	p.A1997A	LYST_uc009xgb.1_Intron|LYST_uc010pxs.1_RNA	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	1997					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			CAAGGACTTCTGCTATAATTT	0.363									Chediak-Higashi_syndrome				25	242					0	0	0.000586117	0	0
LYST	1130	broad.mit.edu	37	1	235972806	235972806	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:235972806G>C	uc001hxj.2	-	5	1487	c.1312C>G	c.(1312-1314)CAG>GAG	p.Q438E	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.Q438E	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	438					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			CCATGATGCTGAATGAATTCT	0.403									Chediak-Higashi_syndrome				4	132					0	0	3.59834e-05	0	0
LYST	1130	broad.mit.edu	37	1	235973814	235973814	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:235973814C>G	uc001hxj.2	-	5	479	c.304G>C	c.(304-306)GCA>CCA	p.A102P	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.A102P	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	102					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			ATTATATCTGCTGAGAGCGGT	0.358									Chediak-Higashi_syndrome				4	113					0	0	0.00024832	0	0
NID1	4811	broad.mit.edu	37	1	236176842	236176842	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:236176842G>A	uc001hxo.2	-	11	2375	c.2273C>T	c.(2272-2274)CCC>CTC	p.P758L	NID1_uc009xgd.2_Intron|NID1_uc009xgc.2_5'Flank	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	758	EGF-like 4.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	GTAGTTGATGGGGCGCTGGTC	0.542													4	58					0	0	3.59834e-05	0	0
HEATR1	55127	broad.mit.edu	37	1	236737997	236737997	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:236737997C>G	uc001hyd.1	-	23	3416	c.3291G>C	c.(3289-3291)GCG>GCC	p.A1097A	HEATR1_uc009xgh.1_Intron	NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	1097					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			TTGGCATTCCCGCGTAAAGTT	0.378													4	157					0	0	8.12818e-05	0	0
MTR	4548	broad.mit.edu	37	1	236966928	236966928	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:236966928T>C	uc001hyi.3	+	2	658	c.235T>C	c.(235-237)TAC>CAC	p.Y79H	MTR_uc010pxv.1_Intron|MTR_uc010pxw.1_5'UTR|MTR_uc010pxx.1_Missense_Mutation_p.Y79H|MTR_uc010pxy.1_Missense_Mutation_p.Y79H	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	79	Hcy-binding.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	TGATGTCATTTACCAAATCCA	0.428													4	65					0	0	0.00024832	0	0
RYR2	6262	broad.mit.edu	37	1	237955612	237955612	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:237955612T>C	uc001hyl.1	+	94	13891	c.13771T>C	c.(13771-13773)TAC>CAC	p.Y4591H	RYR2_uc010pyb.1_Missense_Mutation_p.Y24H	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4591	Helical; Name=M6; (Potential).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CATTGGATACTACTGCTTGAA	0.313													3	53					0	0	0.000602214	0	0
ADSS	159	broad.mit.edu	37	1	244601071	244601071	+	Splice_Site	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:244601071C>A	uc001iaj.2	-	2	478	c.184_splice	c.e2-1	p.G62_splice	ADSS_uc009xgr.1_Splice_Site	NM_001126	NP_001117	P30520	PURA2_HUMAN	adenylosuccinate synthase						AMP biosynthetic process|immune system process|purine base metabolic process	cytosol|plasma membrane	adenylosuccinate synthase activity|GTP binding|magnesium ion binding|phosphate binding			ovary(2)|kidney(1)	3	all_cancers(71;2.17e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)	all_cancers(173;0.0896)|all_epithelial(177;0.172)	all cancers(7;9.71e-08)|GBM - Glioblastoma multiforme(7;1.28e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.0014)		L-Aspartic Acid(DB00128)	TATTTCCTCCCTAAAATGTAA	0.373													11	211					0.000422831	0.00445499	0.000422831	1	0
C1orf101	257044	broad.mit.edu	37	1	244798794	244798794	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:244798794C>T	uc001iam.2	+	21	2711	c.2652C>T	c.(2650-2652)TTC>TTT	p.F884F	C1orf101_uc001ial.2_Silent_p.L832L|C1orf101_uc010pym.1_Silent_p.F733F|C1orf101_uc010pyn.1_Silent_p.F817F	NM_001130957	NP_001124429	Q5SY80	CA101_HUMAN	hypothetical protein LOC257044 isoform 1	884	Extracellular (Potential).					integral to membrane				ovary(1)|breast(1)	2	all_cancers(71;2.99e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)		all cancers(7;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.001)|GBM - Glioblastoma multiforme(7;0.0154)			TTTGCAGTTTCTGTAACCTAA	0.348													8	79					0	0	0.000442599	0	0
KIF26B	55083	broad.mit.edu	37	1	245583023	245583023	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:245583023C>G	uc001ibf.1	+	4	1582	c.1142C>G	c.(1141-1143)TCG>TGG	p.S381W	KIF26B_uc010pyq.1_Missense_Mutation_p.S381W	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	381					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			ACAGGCACATCGGTGGCCGCC	0.597													4	99					0	0	0.000157383	0	0
KIF26B	55083	broad.mit.edu	37	1	245704090	245704090	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:245704090G>T	uc001ibf.1	+	5	1628	c.1188G>T	c.(1186-1188)CTG>CTT	p.L396L	KIF26B_uc010pyq.1_Silent_p.L396L|KIF26B_uc001ibg.1_Silent_p.L14L	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	396					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			AGTTAAATCTGTCTTCTAAAA	0.473													6	261					3.86212e-05	0.000457303	0.000673444	1	0
AHCTF1	25909	broad.mit.edu	37	1	247063445	247063445	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:247063445C>A	uc001ibu.1	-	9	1361	c.1354G>T	c.(1354-1356)GAG>TAG	p.E452*	AHCTF1_uc001ibv.1_Nonsense_Mutation_p.E461*|AHCTF1_uc009xgs.1_5'Flank	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	452	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			AAACTTCTCTCATGTACTAAT	0.368													12	196					0.000566183	0.0056887	0.000566183	1	0
OR2W5	441932	broad.mit.edu	37	1	247654918	247654918	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:247654918G>A	uc001icz.1	+	1	489	c.489G>A	c.(487-489)ACG>ACA	p.T163T		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	163					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			GTCCTCAGACGATGCAGCTCT	0.557													23	82					0	0	0.000229342	0	0
OR2T4	127074	broad.mit.edu	37	1	248525214	248525214	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:248525214C>G	uc001ieh.1	+	1	332	c.332C>G	c.(331-333)CCC>CGC	p.P111R		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	111	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GTCACTGTGCCCAAGATGCTC	0.488													4	167					0	0	0.000157383	0	0
OR2T3	343173	broad.mit.edu	37	1	248637423	248637423	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:248637423G>C	uc001iel.1	+	1	772	c.772G>C	c.(772-774)GGT>CGT	p.G258R		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	258	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GCTGCTCTTCGGTGCTTCCTT	0.547													6	235					0	0	0.000274275	0	0
LARP4B	23185	broad.mit.edu	37	10	866766	866766	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:866766G>C	uc001ifs.1	-	13	1545	c.1504C>G	c.(1504-1506)CGG>GGG	p.R502G		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	502							nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						CTTTTCTTCCGGTAGCCAAAG	0.343													4	111					0	0	0.000602214	0	0
IL15RA	3601	broad.mit.edu	37	10	6002336	6002336	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:6002336G>A	uc001iiv.2	-	4	659	c.577C>T	c.(577-579)CCG>TCG	p.P193S	IL15RA_uc001iiu.2_Missense_Mutation_p.P41S|IL15RA_uc010qau.1_Missense_Mutation_p.P160S|IL15RA_uc001iiw.2_Missense_Mutation_p.P157S|IL15RA_uc001iix.2_Missense_Mutation_p.P124S|IL15RA_uc001iiy.2_Missense_Mutation_p.P41S	NM_002189	NP_002180	Q13261	I15RA_HUMAN	interleukin 15 receptor, alpha isoform 1	193	Extracellular (Potential).				cell proliferation	cytoplasmic vesicle membrane|endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane|nuclear membrane	cytokine receptor activity				0						TAACCTGGCGGCTGGTGGGAG	0.577													20	92					0	0	0.000586117	0	0
SFMBT2	57713	broad.mit.edu	37	10	7230621	7230621	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:7230621G>C	uc009xio.1	-	16	1864	c.1773C>G	c.(1771-1773)CCC>CCG	p.P591P	SFMBT2_uc001ijn.1_Silent_p.P591P|SFMBT2_uc010qay.1_Silent_p.P426P	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	591					regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						AATTCCAGTGGGGATCTTCTA	0.418													4	84					0	0	3.59834e-05	0	0
ITIH2	3698	broad.mit.edu	37	10	7769728	7769728	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:7769728G>T	uc001ijs.2	+	11	1378	c.1216G>T	c.(1216-1218)GGA>TGA	p.G406*		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	406	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						CAATAACTTGGGACTGTTAGA	0.448													7	50					0.000442599	0.00445669	0.000442599	1	0
UPF2	26019	broad.mit.edu	37	10	12009395	12009396	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:12009395_12009396CC>AA	uc001ila.2	-	9	2485_2486	c.2011_2012GG>TT	c.(2011-2013)GGA>TTA	p.G671L	UPF2_uc001ilb.2_Missense_Mutation_p.G671L|UPF2_uc001ilc.2_Missense_Mutation_p.G671L|UPF2_uc009xiz.1_Missense_Mutation_p.G671L	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	671	MIF4G 2.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				AGTTAGTTCTCCTATAAAACGA	0.282													11	562					0	0	6.4e-05	0	0
UPF2	26019	broad.mit.edu	37	10	12077096	12077096	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:12077096G>T	uc001ila.2	-	1	801	c.327C>A	c.(325-327)GCC>GCA	p.A109A	UPF2_uc001ilb.2_Silent_p.A109A|UPF2_uc001ilc.2_Silent_p.A109A|UPF2_uc009xiz.1_Silent_p.A109A	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	109	Potential.|Glu/Lys-rich.|Sufficient for interaction with UPF1.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				GCTGACGTTTGGCCTGCTCTT	0.294													12	554					0.000978159	0.00917326	0.000978159	1	0
DHTKD1	55526	broad.mit.edu	37	10	12142185	12142186	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:12142185_12142186GG>TT	uc001ild.3	+	9	1779_1780	c.1680_1681GG>TT	c.(1678-1683)ATGGAG>ATTTAG	p.560_561ME>I*		NM_018706	NP_061176	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain	560_561					glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			ovary(1)|central_nervous_system(1)	2		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			AGTCCAGAATGGAGAAGATGAT	0.351													19	651					0	0	6.4e-05	0	0
DHTKD1	55526	broad.mit.edu	37	10	12142224	12142224	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:12142224C>G	uc001ild.3	+	9	1818	c.1719C>G	c.(1717-1719)ACC>ACG	p.T573T		NM_018706	NP_061176	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain	573					glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			ovary(1)|central_nervous_system(1)	2		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			ACTGGGCCACCGCGGAAGCTC	0.318													10	735					0	0	0.000151284	0	0
SEC61A2	55176	broad.mit.edu	37	10	12200045	12200045	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:12200045C>G	uc001ile.2	+	9	1063	c.916C>G	c.(916-918)CAG>GAG	p.Q306E	SEC61A2_uc010qbq.1_Missense_Mutation_p.Q284E|SEC61A2_uc001ilf.3_RNA|SEC61A2_uc001ilh.3_RNA|SEC61A2_uc001ilg.3_Missense_Mutation_p.Q306E	NM_018144	NP_060614	Q9H9S3	S61A2_HUMAN	Sec61 alpha form 2 isoform a	306	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1		Renal(717;0.228)				TGTTATTTCCCAGATGCTGTC	0.418													6	406					0	0	3.59834e-05	0	0
SEC61A2	55176	broad.mit.edu	37	10	12200104	12200104	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:12200104C>G	uc001ile.2	+	9	1122	c.975C>G	c.(973-975)GCC>GCG	p.A325A	SEC61A2_uc010qbq.1_Silent_p.A303A|SEC61A2_uc001ilf.3_RNA|SEC61A2_uc001ilh.3_RNA|SEC61A2_uc001ilg.3_Silent_p.A325A	NM_018144	NP_060614	Q9H9S3	S61A2_HUMAN	Sec61 alpha form 2 isoform a	325	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1		Renal(717;0.228)				GACAGTGGGCCGTGAGTATTA	0.368													4	271					0	0	0.00024832	0	0
SEC61A2	55176	broad.mit.edu	37	10	12204267	12204267	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:12204267C>A	uc001ile.2	+	11	1370	c.1223C>A	c.(1222-1224)TCT>TAT	p.S408Y	SEC61A2_uc010qbq.1_Missense_Mutation_p.S386Y|SEC61A2_uc001ilf.3_RNA|SEC61A2_uc001ilh.3_RNA|SEC61A2_uc001ilg.3_Missense_Mutation_p.S408Y	NM_018144	NP_060614	Q9H9S3	S61A2_HUMAN	Sec61 alpha form 2 isoform a	408	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1		Renal(717;0.228)				CGAGATACCTCTATGGTTCAT	0.423													9	274					0.000978159	0.00917326	0.000978159	1	0
SEC61A2	55176	broad.mit.edu	37	10	12206420	12206421	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:12206420_12206421CG>AT	uc001ile.2	+	12	1545_1546	c.1398_1399CG>AT	c.(1396-1401)GCCGAA>GCATAA	p.E467*	SEC61A2_uc010qbq.1_Nonsense_Mutation_p.E445*|SEC61A2_uc001ilf.3_Intron|SEC61A2_uc001ilh.3_Intron|SEC61A2_uc001ilg.3_Intron	NM_018144	NP_060614	Q9H9S3	S61A2_HUMAN	Sec61 alpha form 2 isoform a	467	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1		Renal(717;0.228)				AAGAACAGGCCGAAGTTGGTGG	0.406													10	442					0	0	6.4e-05	0	0
CDC123	8872	broad.mit.edu	37	10	12240769	12240769	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:12240769C>A	uc001ill.2	+	2	424	c.140C>A	c.(139-141)TCA>TAA	p.S47*	NUDT5_uc001ilj.2_5'Flank|NUDT5_uc001ilk.2_5'Flank|CDC123_uc009xja.2_Nonsense_Mutation_p.S47*|CDC123_uc001ilm.2_Nonsense_Mutation_p.S47*	NM_006023	NP_006014	O75794	CD123_HUMAN	cell division cycle 123	47					cell cycle arrest|cell division|positive regulation of cell proliferation|regulation of mitotic cell cycle	cytoplasm				central_nervous_system(1)	1						CTGGTGGTTTCAGGAAGGTAA	0.308													13	454					0.000151284	0.00173001	0.000151284	1	0
CDC123	8872	broad.mit.edu	37	10	12259450	12259450	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:12259450C>G	uc001ill.2	+	6	708	c.424C>G	c.(424-426)CGT>GGT	p.R142G	CDC123_uc001ilm.2_Missense_Mutation_p.R142G	NM_006023	NP_006014	O75794	CD123_HUMAN	cell division cycle 123	142					cell cycle arrest|cell division|positive regulation of cell proliferation|regulation of mitotic cell cycle	cytoplasm				central_nervous_system(1)	1						TTTCATCACTCGTGACTTCAC	0.358													5	417					0	0	8.12818e-05	0	0
CDC123	8872	broad.mit.edu	37	10	12279142	12279142	+	Splice_Site	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:12279142G>T	uc001ill.2	+	9	850	c.566_splice	c.e9-1	p.G189_splice	CDC123_uc001ilm.2_Splice_Site_p.G201_splice	NM_006023	NP_006014	O75794	CD123_HUMAN	cell division cycle 123						cell cycle arrest|cell division|positive regulation of cell proliferation|regulation of mitotic cell cycle	cytoplasm				central_nervous_system(1)	1						TTTCTTGTCAGGTATTTCTCA	0.279													13	465					0.000566183	0.0056887	0.000566183	1	0
HSPA14	51182	broad.mit.edu	37	10	14893268	14893268	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:14893268C>G	uc001inf.2	+	7	659	c.518C>G	c.(517-519)CCG>CGG	p.P173R		NM_016299	NP_057383	Q0VDF9	HSP7E_HUMAN	heat shock 70kDa protein 14 isoform 1	173					'de novo' cotranslational protein folding	cytosol	ATP binding|protein binding			ovary(2)|breast(2)|lung(1)	5						ATTCACGAACCGTCTGCAGCT	0.363													4	180					0	0	0.00024832	0	0
DCLRE1C	64421	broad.mit.edu	37	10	14976709	14976709	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:14976709G>T	uc001inn.2	-	7	615	c.530C>A	c.(529-531)CCA>CAA	p.P177Q	DCLRE1C_uc010qbx.1_Missense_Mutation_p.P177Q|DCLRE1C_uc001inl.2_Missense_Mutation_p.P57Q|DCLRE1C_uc009xji.2_Missense_Mutation_p.P62Q|DCLRE1C_uc001inm.2_Missense_Mutation_p.P57Q|DCLRE1C_uc001ino.2_Missense_Mutation_p.P62Q|DCLRE1C_uc009xjh.2_RNA|DCLRE1C_uc001inp.2_Missense_Mutation_p.P57Q|DCLRE1C_uc001inq.2_Missense_Mutation_p.P57Q|DCLRE1C_uc001inr.2_Missense_Mutation_p.P62Q|DCLRE1C_uc009xjj.1_RNA	NM_001033855	NP_001029027	Q96SD1	DCR1C_HUMAN	artemis protein isoform a	177					DNA recombination	nucleus	5'-3' exonuclease activity|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)	1						TACCCGACTTGGAATTTGGTA	0.408								Involved_in_tolerance_or_repair_of_DNA_crosslinks|NHEJ					8	177					0.000673444	0.00655963	0.000673444	1	0
DCLRE1C	64421	broad.mit.edu	37	10	14977471	14977471	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:14977471G>T	uc001inn.2	-	6	540	c.455C>A	c.(454-456)TCC>TAC	p.S152Y	DCLRE1C_uc010qbx.1_Missense_Mutation_p.S152Y|DCLRE1C_uc001inl.2_Missense_Mutation_p.S32Y|DCLRE1C_uc009xji.2_Missense_Mutation_p.S37Y|DCLRE1C_uc001inm.2_Missense_Mutation_p.S32Y|DCLRE1C_uc001ino.2_Missense_Mutation_p.S37Y|DCLRE1C_uc009xjh.2_RNA|DCLRE1C_uc001inp.2_Missense_Mutation_p.S32Y|DCLRE1C_uc001inq.2_Missense_Mutation_p.S32Y|DCLRE1C_uc001inr.2_Missense_Mutation_p.S37Y|DCLRE1C_uc009xjj.1_5'Flank	NM_001033855	NP_001029027	Q96SD1	DCR1C_HUMAN	artemis protein isoform a	152					DNA recombination	nucleus	5'-3' exonuclease activity|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)	1						CCTGCCCCCGGAGTGCAGAAG	0.383								Involved_in_tolerance_or_repair_of_DNA_crosslinks|NHEJ					7	182					0.000673444	0.00655963	0.000673444	1	0
NMT2	9397	broad.mit.edu	37	10	15154795	15154795	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:15154795C>G	uc001inz.1	-	10	1422	c.1338G>C	c.(1336-1338)TCG>TCC	p.S446S	NMT2_uc001ioa.1_Silent_p.S433S|NMT2_uc009xjo.1_Silent_p.S446S|NMT2_uc010qbz.1_Silent_p.S258S	NM_004808	NP_004799	O60551	NMT2_HUMAN	N-myristoyltransferase 2	446					N-terminal protein myristoylation|protein lipoylation	Golgi apparatus|plasma membrane	glycylpeptide N-tetradecanoyltransferase activity			ovary(1)	1						AGTGGCTTACCGATTTAGCCA	0.502													5	75					0	0	0.000157383	0	0
ITGA8	8516	broad.mit.edu	37	10	15561362	15561362	+	Missense_Mutation	SNP	G	T	T	rs141983422		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:15561362G>T	uc001ioc.1	-	29	3032	c.3032C>A	c.(3031-3033)CCA>CAA	p.P1011Q	ITGA8_uc010qcb.1_Missense_Mutation_p.P996Q	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	1011	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						TACCCATAATGGGATTGAGAA	0.348													10	214					0.000442599	0.00445669	0.000442599	1	0
CUBN	8029	broad.mit.edu	37	10	16916380	16916380	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:16916380C>G	uc001ioo.2	-	58	9281	c.9229G>C	c.(9229-9231)GAG>CAG	p.E3077Q	CUBN_uc009xjq.1_RNA|CUBN_uc009xjr.1_Missense_Mutation_p.E433Q	NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	3077	CUB 23.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TACTTGAGCTCGATCACCTTG	0.408													4	104					0	0	0.00024832	0	0
CUBN	8029	broad.mit.edu	37	10	16994337	16994337	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:16994337C>G	uc001ioo.2	-	33	4959	c.4907G>C	c.(4906-4908)CGG>CCG	p.R1636P		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1636	CUB 11.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GGCAGGGAACCGTGGAGAGGA	0.448													4	116					0	0	0.00024832	0	0
CUBN	8029	broad.mit.edu	37	10	17126317	17126317	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:17126317G>C	uc001ioo.2	-	17	2306	c.2254C>G	c.(2254-2256)CAC>GAC	p.H752D		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	752	CUB 3.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	AGCTCCACGTGGGTGAAGTTG	0.438													5	69					0	0	0.000157383	0	0
STAM	8027	broad.mit.edu	37	10	17735273	17735273	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:17735273C>G	uc001ipj.1	+	6	713	c.497C>G	c.(496-498)ACT>AGT	p.T166S	STAM_uc010qcf.1_Missense_Mutation_p.T55S|STAM_uc009xjw.1_5'Flank	NM_003473	NP_003464	Q92783	STAM1_HUMAN	signal transducing adaptor molecule 1	166					cellular membrane organization|endosome transport|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|early endosome membrane	SH3/SH2 adaptor activity			large_intestine(1)|ovary(1)	2						GATCCTGGTACTGTGGCTAAC	0.388													4	104					0	0	0.00024832	0	0
PLXDC2	84898	broad.mit.edu	37	10	20290736	20290736	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:20290736C>T	uc001iqg.1	+	2	782	c.145C>T	c.(145-147)CAC>TAC	p.H49Y	PLXDC2_uc001iqh.1_Missense_Mutation_p.H49Y	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	49	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						GGCCTTCCCTCACACAGAGGA	0.473													9	43					0	0	0.000442599	0	0
MASTL	84930	broad.mit.edu	37	10	27470490	27470490	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:27470490C>A	uc001itm.2	+	11	3101	c.2462C>A	c.(2461-2463)ACA>AAA	p.T821K	MASTL_uc001itl.2_Missense_Mutation_p.T820K|MASTL_uc009xkw.1_Missense_Mutation_p.T782K|MASTL_uc009xkx.1_RNA	NM_032844	NP_116233	Q96GX5	GWL_HUMAN	microtubule associated serine/threonine	821	Protein kinase.				cell division|G2/M transition of mitotic cell cycle|mitosis|negative regulation of protein phosphatase type 2A activity|regulation of cell cycle|response to DNA damage stimulus	centrosome|cleavage furrow|nucleus	ATP binding|protein phosphatase 2A binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						ATTGATGATACAAAGAGAGCT	0.299													8	152					0.000274275	0.00290969	0.000274275	1	0
LYZL1	84569	broad.mit.edu	37	10	29578079	29578079	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:29578079G>A	uc001iul.2	+	1	90	c.33G>A	c.(31-33)CCG>CCA	p.P11P		NM_032517	NP_115906	Q6UWQ5	LYZL1_HUMAN	lysozyme-like 1	Error:Variant_position_missing_in_Q6UWQ5_after_alignment					cell wall macromolecule catabolic process	extracellular region	lysozyme activity				0		Breast(68;0.203)				GCCTGTCACCGACTAAGTGGA	0.502													5	31					0	0	8.12818e-05	0	0
KIF5B	3799	broad.mit.edu	37	10	32310028	32310028	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:32310028C>A	uc001iwe.3	-	19	2596	c.2126G>T	c.(2125-2127)AGA>ATA	p.R709I		NM_004521	NP_004512	P33176	KINH_HUMAN	kinesin family member 5B	709					stress granule disassembly|vesicle transport along microtubule	kinesin complex|microtubule|perinuclear region of cytoplasm|vesicle	ATP binding|microtubule binding|microtubule motor activity		KIF5B/ALK(4)	lung(4)|ovary(1)	5		Prostate(175;0.0137)				ATGAGTTTCTCTATGGCTCTG	0.333													13	237					1.5739e-10	2.09936e-09	0.000422831	1	0
C10orf68	79741	broad.mit.edu	37	10	33017835	33017835	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:33017835G>A	uc001iwn.3	+	9	1083	c.610G>A	c.(610-612)GAA>AAA	p.E204K	C10orf68_uc001iwl.1_Missense_Mutation_p.E212K|C10orf68_uc001iwm.1_Missense_Mutation_p.E180K|C10orf68_uc010qei.1_Intron|C10orf68_uc001iwo.3_RNA	NM_024688	NP_078964	Q9H943	CJ068_HUMAN	chromosome 10 open reading frame 68	204										skin(2)|ovary(1)	3						AGTACCAAATGAAAATGTGAT	0.294													9	74					0	0	0.000274275	0	0
NRP1	8829	broad.mit.edu	37	10	33552579	33552579	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:33552579G>C	uc001iwx.3	-	4	1176	c.653C>G	c.(652-654)CCT>CGT	p.P218R	NRP1_uc001iwv.3_Missense_Mutation_p.P218R|NRP1_uc009xlz.2_Missense_Mutation_p.P218R|NRP1_uc001iww.3_Missense_Mutation_p.P37R|NRP1_uc001iwy.3_Missense_Mutation_p.P218R|NRP1_uc001iwz.2_Missense_Mutation_p.P218R|NRP1_uc001ixa.2_Missense_Mutation_p.P218R|NRP1_uc001ixb.1_Missense_Mutation_p.P218R|NRP1_uc001ixc.1_Missense_Mutation_p.P218R	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	218	Extracellular (Potential).|CUB 2.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	CTTACCATCAGGGAATCCATC	0.453													4	41					0	0	0.000157383	0	0
CUL2	8453	broad.mit.edu	37	10	35343418	35343419	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:35343418_35343419GG>AA	uc001ixv.2	-	5	576_577	c.366_367CC>TT	c.(364-369)GACCTT>GATTTT	p.L123F	CUL2_uc009xma.2_5'UTR|CUL2_uc010qer.1_Missense_Mutation_p.L142F|CUL2_uc001ixw.2_Missense_Mutation_p.L123F|CUL2_uc010qes.1_Intron	NM_003591	NP_003582	Q13617	CUL2_HUMAN	cullin 2	123					cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex	ubiquitin protein ligase binding			ovary(3)	3						CCATACTGAAGGTCCGCTTCTG	0.327													22	104					0	0	6.4e-05	0	0
ZNF248	57209	broad.mit.edu	37	10	38121758	38121758	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:38121758G>C	uc001izd.1	-	6	1024	c.525C>G	c.(523-525)CTC>CTG	p.L175L	ZNF248_uc009xmc.2_Intron|ZNF248_uc001izb.2_Intron|ZNF248_uc001izc.2_Intron|ZNF248_uc010qeu.1_Silent_p.L175L	NM_021045	NP_066383	Q8NDW4	ZN248_HUMAN	zinc finger protein 248	175					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TAATATCAAGGAGCAATTTCT	0.328													4	119					0	0	0.00024832	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	G	G	rs2257765		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453													4	84					0	0	0.000602214	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43659338	43659338	+	Silent	SNP	C	T	T	rs78146682	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:43659338C>T	uc001jan.2	+	5	1340	c.1005C>T	c.(1003-1005)ACC>ACT	p.T335T		NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	335	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						ACAATTACACCTTGGTCTCAT	0.403													6	53					0	0	0.000274275	0	0
LRRC18	474354	broad.mit.edu	37	10	50121549	50121549	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:50121549G>C	uc001jhd.2	-	1	732	c.652C>G	c.(652-654)CGG>GGG	p.R218G	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Missense_Mutation_p.R218G	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	218						cytoplasm				ovary(1)|pancreas(1)	2						AGGTTGTCCCGGGCGTTTTGG	0.498													4	151					0	0	0.000157383	0	0
C10orf53	282966	broad.mit.edu	37	10	50916545	50916545	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:50916545T>C	uc001jid.1	+	3	416	c.356T>C	c.(355-357)GTA>GCA	p.V119A		NM_182554	NP_872360	Q8N6V4	CJ053_HUMAN	chromosome 10 open reading frame 53 isoform a	Error:Variant_position_missing_in_Q8N6V4_after_alignment											0		all_neural(218;0.107)				acttgtactgtattggcccag	0													4	177					0	0	0.00024832	0	0
AGAP6	414189	broad.mit.edu	37	10	51768608	51768608	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:51768608G>C	uc001jix.3	+	8	1121	c.723G>C	c.(721-723)ACG>ACC	p.T241T		NM_001077665	NP_001071133	Q5VW22	AGAP6_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	241					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			skin(1)	1						ACACACCCACGCCCGTTTGCA	0.542													3	101					0	0	0.000602214	0	0
FAM21A	387680	broad.mit.edu	37	10	51863866	51863866	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:51863866C>G	uc001jjb.2	+	18	1782	c.1700C>G	c.(1699-1701)CCC>CGC	p.P567R	FAM21A_uc001jja.1_Missense_Mutation_p.P319R|FAM21A_uc010qhi.1_Missense_Mutation_p.P567R|FAM21A_uc010qhj.1_Missense_Mutation_p.P567R|FAM21B_uc009xoq.2_Missense_Mutation_p.P479R	NM_001005751	NP_001005751	Q641Q2	FA21A_HUMAN	hypothetical protein LOC387680	567					retrograde transport, endosome to Golgi	early endosome membrane|WASH complex				ovary(1)	1						GGCAAGCTCCCCACGTTGGTT	0.393													4	122					0	0	0.00024832	0	0
FAM21A	387680	broad.mit.edu	37	10	51863872	51863872	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:51863872T>C	uc001jjb.2	+	18	1788	c.1706T>C	c.(1705-1707)TTG>TCG	p.L569S	FAM21A_uc001jja.1_Missense_Mutation_p.L321S|FAM21A_uc010qhi.1_Missense_Mutation_p.L569S|FAM21A_uc010qhj.1_Missense_Mutation_p.L569S|FAM21B_uc009xoq.2_Missense_Mutation_p.L481S	NM_001005751	NP_001005751	Q641Q2	FA21A_HUMAN	hypothetical protein LOC387680	569					retrograde transport, endosome to Golgi	early endosome membrane|WASH complex				ovary(1)	1						CTCCCCACGTTGGTTTCCCTG	0.388													5	124					0	0	0.000602214	0	0
Unknown	0	broad.mit.edu	37	10	52390485	52390485	+	RNA	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:52390485G>A	uc001jjf.1	+	2		c.1178G>A								Homo sapiens cDNA FLJ12320 fis, clone MAMMA1002082.																		CTGCAGGGATGAAATCTGGAT	0.443													19	86					0	0	0.000132079	0	0
PRKG1	5592	broad.mit.edu	37	10	53667292	53667292	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:53667292G>T	uc001jjm.2	+	5	873	c.679G>T	c.(679-681)GAA>TAA	p.E227*	PRKG1_uc001jjn.2_Nonsense_Mutation_p.E242*|PRKG1_uc001jjo.2_Nonsense_Mutation_p.E242*	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	227	cGMP 2.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		GAGCCTTCCTGAAGAGATCCT	0.403													7	145					0.000978159	0.00917326	0.000978159	1	0
ANK3	288	broad.mit.edu	37	10	61829314	61829314	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:61829314G>C	uc001jky.2	-	37	11517	c.11325C>G	c.(11323-11325)CCC>CCG	p.P3775P	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3775					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GTTTTTCATGGGGCCTAACGC	0.338													5	155					0	0	0.000602214	0	0
RHOBTB1	9886	broad.mit.edu	37	10	62631254	62631254	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:62631254G>T	uc001jli.2	-	12	2515	c.2077C>A	c.(2077-2079)CCA>ACA	p.P693T	RHOBTB1_uc001jlh.2_Missense_Mutation_p.P693T|RHOBTB1_uc001jlj.2_Missense_Mutation_p.P693T|RHOBTB1_uc001jlk.2_Missense_Mutation_p.P693T|RHOBTB1_uc009xpe.1_Missense_Mutation_p.P631T|RHOBTB1_uc009xpd.2_3'UTR|RHOBTB1_uc001jll.2_Missense_Mutation_p.P443T	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	693					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					GCCACTGCTGGAGATGAATTC	0.408													7	113					0.000978159	0.00917326	0.000978159	1	0
RHOBTB1	9886	broad.mit.edu	37	10	62648310	62648310	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:62648310G>C	uc001jli.2	-	7	1554	c.1116C>G	c.(1114-1116)ACC>ACG	p.T372T	RHOBTB1_uc001jlh.2_Silent_p.T372T|RHOBTB1_uc001jlj.2_Silent_p.T372T|RHOBTB1_uc001jlk.2_Silent_p.T372T|RHOBTB1_uc009xpe.1_Silent_p.T310T|RHOBTB1_uc001jll.2_Silent_p.T122T	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	372	BTB 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					TACTCCATCCGGTCAAAGTCT	0.562													4	126					0	0	3.59834e-05	0	0
ZNF365	22891	broad.mit.edu	37	10	64136504	64136504	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:64136504C>G	uc001jmc.2	+	2	867	c.552C>G	c.(550-552)ACC>ACG	p.T184T	ZNF365_uc001jly.3_Silent_p.T199T|ZNF365_uc001jmb.3_Silent_p.T184T|ZNF365_uc001jlz.3_Silent_p.T184T|ZNF365_uc001jma.3_Intron	NM_199451	NP_955523	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform C	Error:Variant_position_missing_in_Q70YC4_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					ATAAACTCACCAAAGAGTTGG	0.473													4	164					0	0	3.59834e-05	0	0
JMJD1C	221037	broad.mit.edu	37	10	64968100	64968100	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:64968100G>C	uc001jmn.2	-	10	3629	c.3329C>G	c.(3328-3330)CCA>CGA	p.P1110R	JMJD1C_uc001jml.2_Missense_Mutation_p.P891R|JMJD1C_uc001jmm.2_Missense_Mutation_p.P822R|JMJD1C_uc010qiq.1_Missense_Mutation_p.P928R|JMJD1C_uc009xpi.2_Missense_Mutation_p.P928R|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc009xpk.1_Missense_Mutation_p.P147R	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	1110					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					TTCTTTGGATGGGTATGATCT	0.383													4	133					0	0	0.00024832	0	0
CTNNA3	29119	broad.mit.edu	37	10	69281626	69281626	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:69281626C>T	uc009xpn.1	-	5	676	c.553G>A	c.(553-555)GAT>AAT	p.D185N	CTNNA3_uc001jmw.2_Missense_Mutation_p.D185N|CTNNA3_uc001jmx.3_Missense_Mutation_p.D185N|CTNNA3_uc009xpo.1_Missense_Mutation_p.D45N|CTNNA3_uc001jna.2_Missense_Mutation_p.D197N	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	185					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						GCTAAATAATCCAAATTTTCC	0.458													17	62					0	0	0.00074312	0	0
DNAJC12	56521	broad.mit.edu	37	10	69565372	69565372	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:69565372C>A	uc001jnb.2	-	4	639	c.471G>T	c.(469-471)AAG>AAT	p.K157N		NM_021800	NP_068572	Q9UKB3	DJC12_HUMAN	J domain containing protein 1 isoform a	157					protein folding		heat shock protein binding|unfolded protein binding			breast(1)	1						GGGAGACTGACTTCTCTAGGG	0.403													10	230					2.27111e-07	2.94575e-06	0.00010058	1	0
TET1	80312	broad.mit.edu	37	10	70441237	70441237	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:70441237C>A	uc001jok.3	+	9	5411	c.4906C>A	c.(4906-4908)CAA>AAA	p.Q1636K		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1636					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						AGTAGCTTACCAAAATCAGGT	0.229													7	46					0.000274275	0.00290969	0.000274275	1	0
CCAR1	55749	broad.mit.edu	37	10	70547683	70547683	+	Splice_Site	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:70547683G>C	uc001joo.2	+	22	3000	c.2881_splice	c.e22-1	p.V961_splice	CCAR1_uc010qiz.1_Splice_Site_p.V946_splice|CCAR1_uc010qjb.1_Splice_Site	NM_018237	NP_060707	Q8IX12	CCAR1_HUMAN	cell-cycle and apoptosis regulatory protein 1						apoptosis|cell cycle|nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm|perinuclear region of cytoplasm	calcium ion binding|nucleic acid binding|protein binding			ovary(6)|large_intestine(1)	7						ATGCATAACAGGTAAAGAAGC	0.299													4	95					0	0	0.00024832	0	0
SUPV3L1	6832	broad.mit.edu	37	10	70958170	70958170	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:70958170C>A	uc001jpe.1	+	9	1121	c.1066C>A	c.(1066-1068)CAT>AAT	p.H356N	SUPV3L1_uc010qjd.1_Missense_Mutation_p.H225N	NM_003171	NP_003162	Q8IYB8	SUV3_HUMAN	suppressor of var1, 3-like 1 precursor	356	Helicase C-terminal.				DNA duplex unwinding	mitochondrial nucleoid|nucleus	ATP binding|DNA binding|DNA helicase activity|RNA binding			urinary_tract(1)|ovary(1)	2						TGTGCTGGACCATGCACTAGA	0.428													7	186					0.000442599	0.00445669	0.000442599	1	0
DNAJB12	54788	broad.mit.edu	37	10	74114694	74114694	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:74114694G>A	uc010qjv.1	-	1	214	c.64C>T	c.(64-66)CCG>TCG	p.P22S	DNAJB12_uc001jsz.2_Missense_Mutation_p.P22S|DNAJB12_uc001jta.2_Missense_Mutation_p.P22S	NM_017626	NP_060096	Q9NXW2	DJB12_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 12	Error:Variant_position_missing_in_Q9NXW2_after_alignment					protein folding	endoplasmic reticulum|integral to membrane	heat shock protein binding|unfolded protein binding				0						GGGGAGGCCGGGCGAGCGAAG	0.672													4	50					0	0	3.59834e-05	0	0
CCDC109A	90550	broad.mit.edu	37	10	74645554	74645554	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:74645554C>T	uc001jtc.2	+	8	1051	c.1030C>T	c.(1030-1032)CTC>TTC	p.L344F	CCDC109A_uc009xqr.2_Missense_Mutation_p.L323F|CCDC109A_uc001jtd.2_Missense_Mutation_p.L295F	NM_138357	NP_612366	Q8NE86	MCU_HUMAN	coiled-coil domain containing 109A	344	Mitochondrial matrix (Potential).				elevation of mitochondrial calcium ion concentration|mitochondrial calcium ion transport|protein complex oligomerization	integral to membrane|mitochondrial inner membrane	protein binding				0	Prostate(51;0.0198)					ACATCTGCCTCTCCGACAAAT	0.408													5	80					0	0	8.12818e-05	0	0
OIT3	170392	broad.mit.edu	37	10	74690314	74690314	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:74690314G>C	uc001jte.1	+	8	1604	c.1386G>C	c.(1384-1386)TCG>TCC	p.S462S	OIT3_uc009xqs.1_RNA	NM_152635	NP_689848	Q8WWZ8	OIT3_HUMAN	oncoprotein-induced transcript 3 precursor	462	ZP.					nuclear envelope	calcium ion binding			ovary(2)	2	Prostate(51;0.0198)					CAGATGACTCGGTAAAGCAGT	0.443													6	183					0	0	3.59834e-05	0	0
P4HA1	5033	broad.mit.edu	37	10	74804785	74804785	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:74804785G>C	uc010qka.1	-	10	1436	c.1102C>G	c.(1102-1104)CCA>GCA	p.P368A	P4HA1_uc001jtg.2_Missense_Mutation_p.P368A|P4HA1_uc001jth.2_Intron|P4HA1_uc010qkb.1_Intron|P4HA1_uc001jti.2_Intron	NM_001142595	NP_001136067	P13674	P4HA1_HUMAN	prolyl 4-hydroxylase, alpha I subunit isoform 2	368						endoplasmic reticulum lumen|mitochondrion	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			ovary(1)	1	Prostate(51;0.0198)				Hydralazine(DB01275)|L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CCTGTTATTGGGTTTGAAATG	0.388													4	95					0	0	0.00024832	0	0
PPP3CB	5532	broad.mit.edu	37	10	75231291	75231291	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:75231291G>T	uc001jue.2	-	5	739	c.604C>A	c.(604-606)CAA>AAA	p.Q202K	PPP3CB_uc001juf.2_Missense_Mutation_p.Q202K|PPP3CB_uc001jug.2_Missense_Mutation_p.Q202K|PPP3CB_uc001jui.2_Missense_Mutation_p.Q220K|PPP3CB_uc001juh.2_Missense_Mutation_p.Q116K	NM_021132	NP_066955	P16298	PP2BB_HUMAN	protein phosphatase 3, catalytic subunit, beta	202	Catalytic.									skin(1)	1	Prostate(51;0.0119)					AGAAACTGTTGGTTTAAAAGT	0.333													7	190					0.000442599	0.00445669	0.000442599	1	0
MYOZ1	58529	broad.mit.edu	37	10	75397672	75397672	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:75397672C>G	uc001jur.2	-	3	447	c.82G>C	c.(82-84)GAG>CAG	p.E28Q		NM_021245	NP_067068	Q9NP98	MYOZ1_HUMAN	myozenin 1	28					myofibril assembly	nucleus|pseudopodium	FATZ binding			ovary(2)	2	Prostate(51;0.0112)					CCTGAGCTCTCCTGTCCACCT	0.498													4	123					0	0	3.59834e-05	0	0
AP3M1	26985	broad.mit.edu	37	10	75897981	75897981	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:75897981G>C	uc001jwf.2	-	2	587	c.157C>G	c.(157-159)CAC>GAC	p.H53D	AP3M1_uc001jwg.2_Missense_Mutation_p.H53D|AP3M1_uc001jwh.2_Missense_Mutation_p.H53D|AP3M1_uc010qla.1_Missense_Mutation_p.H53D	NM_207012	NP_996895	Q9Y2T2	AP3M1_HUMAN	adaptor-related protein complex 3, mu 1 subunit	53					protein targeting to lysosome|vesicle-mediated transport	clathrin adaptor complex|Golgi apparatus|lysosome	protein binding				0	Prostate(51;0.0112)					AGGTAGTGGTGAGGTGTTGAA	0.438													6	96					0	0	3.59834e-05	0	0
MYST4	23522	broad.mit.edu	37	10	76602733	76602733	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:76602733C>A	uc001jwn.1	+	3	611	c.118C>A	c.(118-120)CAT>AAT	p.H40N	MYST4_uc001jwm.1_Missense_Mutation_p.H40N|MYST4_uc001jwo.1_Missense_Mutation_p.H40N|MYST4_uc001jwp.1_Missense_Mutation_p.H40N	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	40					histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					CAGTACTTCCCATGGGTTGGA	0.448			T	CREBBP	AML								7	166					0.000274275	0.00290969	0.000274275	1	0
FAM35A	54537	broad.mit.edu	37	10	88939836	88939836	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:88939836G>C	uc001kei.3	+	7	2082	c.1968G>C	c.(1966-1968)GTG>GTC	p.V656V	FAM35A_uc001kej.3_Silent_p.V102V	NM_019054	NP_061927	Q86V20	FA35A_HUMAN	hypothetical protein LOC54537	656										ovary(2)|skin(2)	4						TTGTAGGAGTGGTTCTGATTA	0.323													4	154					0	0	3.59834e-05	0	0
ATAD1	84896	broad.mit.edu	37	10	89550073	89550073	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:89550073G>A	uc001key.1	-	3	659	c.376C>T	c.(376-378)CCA>TCA	p.P126S	ATAD1_uc010qmr.1_Missense_Mutation_p.P68S|ATAD1_uc009xth.1_RNA|ATAD1_uc001kez.1_Missense_Mutation_p.P126S	NM_032810	NP_116199	Q8NBU5	ATAD1_HUMAN	ATPase family, AAA domain containing 1	126						peroxisome	ATP binding|nucleoside-triphosphatase activity			large_intestine(1)|ovary(1)	2		all_cancers(4;6.78e-12)|Prostate(4;3.56e-12)|all_epithelial(4;5.58e-09)|Melanoma(5;0.0273)|Breast(4;0.0424)|all_hematologic(4;0.0846)|Colorectal(252;0.207)|Glioma(4;0.217)|all_neural(4;0.224)		UCEC - Uterine corpus endometrioid carcinoma (6;0.00131)|GBM - Glioblastoma multiforme(1;1.1e-32)|Lung(2;1.4e-05)|LUSC - Lung squamous cell carcinoma(2;2.69e-05)|Colorectal(12;7.09e-05)|COAD - Colon adenocarcinoma(12;0.000261)|STAD - Stomach adenocarcinoma(243;0.235)		ATACCTTTTGGAGGCTGCAGA	0.348													5	72					0	0	0.000602214	0	0
IFIT1B	439996	broad.mit.edu	37	10	91143089	91143089	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:91143089G>T	uc001kgh.2	+	2	99	c.19G>T	c.(19-21)GGA>TGA	p.G7*	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron	NM_001010987	NP_001010987	Q5T764	IFT1B_HUMAN	interferon-induced protein with	7							binding				0						AGAATCTGATGGAAAGCTTAT	0.358													7	111					0.000274275	0.00290969	0.000274275	1	0
KIF20B	9585	broad.mit.edu	37	10	91469102	91469102	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:91469102G>C	uc001kgs.1	+	4	307	c.235G>C	c.(235-237)GGC>CGC	p.G79R	KIF20B_uc001kgr.1_Missense_Mutation_p.G79R	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	79	Kinesin-motor.				cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						TGTTTTCTAGGGCTGTGTGCA	0.363													4	222					0	0	3.59834e-05	0	0
HECTD2	143279	broad.mit.edu	37	10	93244936	93244936	+	Splice_Site	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:93244936G>T	uc001khl.2	+	10	1071	c.971_splice	c.e10-1	p.N324_splice	LOC100188947_uc010qnl.1_Intron|HECTD2_uc010qnm.1_Splice_Site_p.N328_splice|HECTD2_uc001khm.2_Splice_Site|HECTD2_uc009xty.1_Splice_Site|HECTD2_uc001khn.1_Splice_Site	NM_182765	NP_877497	Q5U5R9	HECD2_HUMAN	HECT domain containing 2 isoform a						protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			skin(1)	1						TATCTTTACAGATACTGCAAA	0.303													8	153					0.000673444	0.00655963	0.000673444	1	0
IDE	3416	broad.mit.edu	37	10	94268530	94268530	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:94268530C>G	uc001kia.2	-	7	1091	c.1015G>C	c.(1015-1017)GGG>CGG	p.G339R		NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	339	Substrate binding exosite.				beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCTTCATGCCCAATGAGATGA	0.418													6	367					0	0	0.000274275	0	0
IDE	3416	broad.mit.edu	37	10	94294495	94294495	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:94294495C>A	uc001kia.2	-	3	407	c.331G>T	c.(331-333)GAA>TAA	p.E111*		NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	111		Proton acceptor (By similarity).		E->Q: Loss of catalytic activity.	beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	AGCATATGTTCACAAAAATGA	0.358													11	448					6.40141e-05	0.00075092	0.000978159	1	0
KIF11	3832	broad.mit.edu	37	10	94366403	94366403	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:94366403G>T	uc001kic.2	+	3	546	c.238G>T	c.(238-240)GAT>TAT	p.D80Y	KIF11_uc010qnq.1_Intron	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	80	Kinesin-motor.				blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						TAAACAGATTGATGTTTACCG	0.284													11	596					3.45872e-05	0.000417197	0.000422831	1	0
KIF11	3832	broad.mit.edu	37	10	94368822	94368822	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:94368822G>T	uc001kic.2	+	5	741	c.433G>T	c.(433-435)GAG>TAG	p.E145*	KIF11_uc010qnq.1_Intron	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	145	Kinesin-motor.				blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						TCAAATTTTTGAGAAACTTAC	0.343													15	487					5.35267e-07	6.89753e-06	0.000958276	1	0
KIF11	3832	broad.mit.edu	37	10	94393495	94393495	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:94393495G>T	uc001kic.2	+	14	2126	c.1818G>T	c.(1816-1818)ATG>ATT	p.M606I	KIF11_uc010qnq.1_Intron	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	606					blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						TTTTTAATATGATACTAAAAG	0.328													15	563					3.52763e-06	4.40851e-05	0.000566183	1	0
EXOC6	54536	broad.mit.edu	37	10	94688095	94688095	+	Splice_Site	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:94688095G>T	uc001kig.2	+	9	955	c.889_splice	c.e9-1	p.G297_splice	EXOC6_uc010qnr.1_Splice_Site_p.G313_splice|EXOC6_uc001kie.2_Splice_Site_p.G292_splice|EXOC6_uc009xub.2_Splice_Site_p.G297_splice|EXOC6_uc009xuc.2_Splice_Site_p.G274_splice|EXOC6_uc001kih.2_5'Flank	NM_019053	NP_061926	Q8TAG9	EXOC6_HUMAN	SEC15-like 1 isoform a						protein transport|vesicle docking involved in exocytosis	exocyst				skin(1)	1		Colorectal(252;0.123)				TTTTATTTTAGGGTGACGAGG	0.333													11	215					7.93312e-07	1.01146e-05	0.000219431	1	0
EXOC6	54536	broad.mit.edu	37	10	94712080	94712080	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:94712080C>A	uc001kig.2	+	15	1533	c.1467C>A	c.(1465-1467)TAC>TAA	p.Y489*	EXOC6_uc010qnr.1_Nonsense_Mutation_p.Y505*|EXOC6_uc001kie.2_Nonsense_Mutation_p.Y484*|EXOC6_uc009xub.2_Nonsense_Mutation_p.Y488*|EXOC6_uc009xuc.2_Nonsense_Mutation_p.Y386*|EXOC6_uc001kih.2_RNA|EXOC6_uc001kii.2_Nonsense_Mutation_p.Y63*	NM_019053	NP_061926	Q8TAG9	EXOC6_HUMAN	SEC15-like 1 isoform a	489					protein transport|vesicle docking involved in exocytosis	exocyst				skin(1)	1		Colorectal(252;0.123)				CTCATATTTACATTCAAGTTA	0.313													9	501					3.86212e-05	0.000457303	0.000673444	1	0
CEP55	55165	broad.mit.edu	37	10	95259849	95259850	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:95259849_95259850GG>TT	uc009xug.2	+	2	223_224	c.41_42GG>TT	c.(40-42)TGG>TTT	p.W14F	CEP55_uc001kiq.3_Missense_Mutation_p.W14F	NM_001127182	NP_001120654	Q53EZ4	CEP55_HUMAN	centrosomal protein 55kDa	14					cell division|mitosis	centriole|cleavage furrow|midbody					0		Colorectal(252;0.207)				AAAAGTAAGTGGGGATCGAAGC	0.317													9	276					0	0	6.4e-05	0	0
CEP55	55165	broad.mit.edu	37	10	95259877	95259877	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:95259877C>A	uc009xug.2	+	2	251	c.69C>A	c.(67-69)TCC>TCA	p.S23S	CEP55_uc001kiq.3_Silent_p.S23S	NM_001127182	NP_001120654	Q53EZ4	CEP55_HUMAN	centrosomal protein 55kDa	23	Potential.				cell division|mitosis	centriole|cleavage furrow|midbody					0		Colorectal(252;0.207)				ACTCCAAATCCGAAACTACAT	0.353													8	301					0.000442599	0.00445669	0.000442599	1	0
TCTN3	26123	broad.mit.edu	37	10	97442448	97442448	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:97442448C>A	uc001klb.3	-	12	1656	c.1412G>T	c.(1411-1413)GGA>GTA	p.G471V	TCTN3_uc001kla.3_Missense_Mutation_p.G315V|TCTN3_uc010qoi.1_Missense_Mutation_p.G323V	NM_015631	NP_056446	Q6NUS6	TECT3_HUMAN	tectonic 3 isoform a precursor	471	Extracellular (Potential).				apoptosis	integral to membrane					0		Colorectal(252;0.0815)		Epithelial(162;1.69e-07)|all cancers(201;5.63e-06)		GGTCCACCCTCCTTTCTGGGC	0.468													8	146					0.000442599	0.00445669	0.000442599	1	0
ZNF518A	9849	broad.mit.edu	37	10	97917568	97917568	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:97917568G>C	uc001klp.2	+	6	2346	c.1489G>C	c.(1489-1491)GGA>CGA	p.G497R	ZNF518A_uc001klo.1_Intron|ZNF518A_uc001klq.2_Missense_Mutation_p.G497R|ZNF518A_uc001klr.2_Missense_Mutation_p.G497R	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	497					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		ATTTTTAACAGGAGTAACAAC	0.393													6	194					0	0	3.59834e-05	0	0
ZNF518A	9849	broad.mit.edu	37	10	97919603	97919603	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:97919603C>A	uc001klp.2	+	6	4381	c.3524C>A	c.(3523-3525)CCA>CAA	p.P1175Q	ZNF518A_uc001klo.1_Missense_Mutation_p.P645Q|ZNF518A_uc001klq.2_Missense_Mutation_p.P1175Q|ZNF518A_uc001klr.2_Missense_Mutation_p.P1175Q	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	1175					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		GACAACGTACCATCTAATCAG	0.368													11	111					5.50884e-06	6.81381e-05	0.00010058	1	0
TLL2	7093	broad.mit.edu	37	10	98170203	98170203	+	Silent	SNP	C	G	G	rs139552531		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:98170203C>G	uc001kml.1	-	9	1303	c.1077G>C	c.(1075-1077)ACG>ACC	p.T359T	TLL2_uc009xvf.1_Silent_p.T337T	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	359	CUB 1.				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		AAAAGTTTCCCGTTGTGTCCT	0.582													3	50					0	0	6.4e-05	0	0
HPS1	3257	broad.mit.edu	37	10	100189578	100189578	+	Silent	SNP	C	G	G	rs139937548		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:100189578C>G	uc010qpf.1	-	9	1083	c.837G>C	c.(835-837)ACG>ACC	p.T279T	HPS1_uc001kpi.1_Silent_p.T279T|HPS1_uc001kpj.1_Intron|HPS1_uc001kpk.1_Intron|HPS1_uc009xwb.2_Intron|HPS1_uc010qph.1_Silent_p.T279T|HPS1_uc001kpl.2_Silent_p.T279T	NM_000195	NP_000186	Q92902	HPS1_HUMAN	Hermansky-Pudlak syndrome 1 protein isoform a	279					lysosome organization|response to stimulus|visual perception	cytoplasmic membrane-bounded vesicle|integral to plasma membrane|lysosome|membrane fraction|soluble fraction	protein dimerization activity			skin(1)	1		Colorectal(252;0.234)		Epithelial(162;3.87e-12)|all cancers(201;5.63e-10)		CAGTTGGGCCCGTGGAGTGAG	0.687									Hermansky-Pudlak_syndrome				4	108					0	0	3.59834e-05	0	0
COX15	1355	broad.mit.edu	37	10	101476172	101476172	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:101476172C>A	uc001kqb.3	-	8	1651	c.1034G>T	c.(1033-1035)CGG>CTG	p.R345L	COX15_uc001kqc.3_Missense_Mutation_p.R345L|COX15_uc010qpj.1_Missense_Mutation_p.R166L	NM_078470	NP_510870	Q7KZN9	COX15_HUMAN	COX15 homolog isoform 1	345					heme a biosynthetic process|respiratory chain complex IV assembly|respiratory gaseous exchange	integral to membrane|mitochondrial respiratory chain	cytochrome-c oxidase activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;3.08e-10)|all cancers(201;2.43e-08)		GGGAATTCTCCGAGAGAGGAA	0.458													5	102					1.23904e-05	0.000151632	0.000602214	1	0
BLOC1S2	282991	broad.mit.edu	37	10	102039909	102039909	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:102039909G>T	uc001kqw.1	-	4	392	c.369C>A	c.(367-369)TAC>TAA	p.Y123*	BLOC1S2_uc001kqv.1_Nonsense_Mutation_p.Y80*	NM_173809	NP_776170	Q6QNY1	BL1S2_HUMAN	biogenesis of lysosome-related organelles	123	Potential.				melanosome organization|microtubule nucleation|platelet dense granule organization|positive regulation of cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of apoptosis	BLOC-1 complex|centrosome|gamma-tubulin complex|nucleus	gamma-tubulin binding|identical protein binding|protein C-terminus binding			ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.44e-10)|all cancers(201;1.97e-08)		CATCCAACTTGTAAGCTGCCT	0.368													6	140					0.000274275	0.00290969	0.000274275	1	0
SCD	6319	broad.mit.edu	37	10	102108059	102108059	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:102108059G>T	uc001kqy.2	+	2	756	c.266G>T	c.(265-267)GGG>GTG	p.G89V		NM_005063	NP_005054	O00767	ACOD_HUMAN	stearoyl-CoA desaturase 1	89	Helical; (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity				0		Colorectal(252;0.0323)		Epithelial(162;1.97e-10)|all cancers(201;1.73e-08)		GCCCTGTATGGGATCACTTTG	0.507													8	122					0.000274275	0.00290969	0.000274275	1	0
HIF1AN	55662	broad.mit.edu	37	10	102306297	102306297	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:102306297C>A	uc001krj.3	+	6	928	c.853C>A	c.(853-855)CTA>ATA	p.L285I		NM_017902	NP_060372	Q9NWT6	HIF1N_HUMAN	hypoxia-inducible factor 1, alpha subunit	285	JmjC.|Interaction with HIF1A.|Interaction with VHL.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity|protein binding				0		Colorectal(252;0.234)		Epithelial(162;6.75e-10)|all cancers(201;4.88e-08)		AGAGTCATTACTAAATGGGGG	0.483													5	157					0.000442599	0.00445669	0.000442599	1	0
GBF1	8729	broad.mit.edu	37	10	104139072	104139072	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:104139072G>C	uc001kux.1	+	34	4763	c.4523G>C	c.(4522-4524)CGG>CCG	p.R1508P	GBF1_uc001kuy.1_Missense_Mutation_p.R1504P|GBF1_uc001kuz.1_Missense_Mutation_p.R1505P	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	1508					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		CTGCACACGCGGGCAGCCTCT	0.607													4	76					0	0	0.00024832	0	0
ITPRIP	85450	broad.mit.edu	37	10	106074346	106074346	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:106074346C>G	uc001kye.2	-	2	1537	c.1464G>C	c.(1462-1464)ATG>ATC	p.M488I	ITPRIP_uc001kyf.2_Missense_Mutation_p.M488I|ITPRIP_uc001kyg.2_Missense_Mutation_p.M488I	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	488						plasma membrane					0						CAGGGAGTCCCATGGCCTCAG	0.597													4	85					0	0	0.00024832	0	0
TCF7L2	6934	broad.mit.edu	37	10	114920413	114920413	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:114920413G>T	uc001lae.3	+	13	1861	c.1354G>T	c.(1354-1356)GGG>TGG	p.G452W	TCF7L2_uc001lac.3_Intron|TCF7L2_uc010qrk.1_Intron|TCF7L2_uc010qrl.1_Missense_Mutation_p.G429W|TCF7L2_uc010qrm.1_Intron|TCF7L2_uc010qrn.1_Intron|TCF7L2_uc001lad.3_Intron|TCF7L2_uc001lag.3_Intron|TCF7L2_uc001laf.3_Intron|TCF7L2_uc010qro.1_Intron|TCF7L2_uc001lah.2_Missense_Mutation_p.R475L|TCF7L2_uc010qrp.1_Intron|TCF7L2_uc010qrq.1_Intron|TCF7L2_uc010qrr.1_Missense_Mutation_p.G384W|TCF7L2_uc010qrs.1_Intron|TCF7L2_uc010qrt.1_Missense_Mutation_p.G340W|TCF7L2_uc010qru.1_Intron|TCF7L2_uc010qrv.1_Intron|TCF7L2_uc010qrw.1_Intron|TCF7L2_uc010qrx.1_Intron	NM_001146274	NP_001139746	Q9NQB0	TF7L2_HUMAN	transcription factor 7-like 2 isoform 1	469	Promoter-specific activation domain.				anti-apoptosis|blood vessel development|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell cycle arrest|cell proliferation|fat cell differentiation|glucose homeostasis|maintenance of DNA repeat elements|myoblast cell fate commitment|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|pancreas development|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of insulin secretion|positive regulation of protein binding|positive regulation of protein export from nucleus|positive regulation of protein kinase B signaling cascade|positive regulation of transcription from RNA polymerase II promoter|regulation of hormone metabolic process|regulation of smooth muscle cell proliferation|response to glucose stimulus	beta-catenin-TCF7L2 complex|PML body|protein-DNA complex	armadillo repeat domain binding|beta-catenin binding|gamma-catenin binding|nuclear hormone receptor binding|protein kinase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			large_intestine(3)|ovary(1)	4		Breast(234;0.058)|Colorectal(252;0.0615)		Epithelial(162;0.00554)|all cancers(201;0.02)		GGCACTGTTCGGGCTTGACCG	0.463													7	270					0.000673444	0.00655963	0.000673444	1	0
C10orf81	79949	broad.mit.edu	37	10	115527231	115527231	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:115527231C>A	uc001lat.1	+	4	896	c.334C>A	c.(334-336)CAC>AAC	p.H112N	C10orf81_uc001lar.1_Missense_Mutation_p.H118N|C10orf81_uc009xyc.1_Missense_Mutation_p.H30N|C10orf81_uc001las.1_Missense_Mutation_p.H30N	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	112	PH.									central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		CCTCATTGGCCACGACAGGTG	0.383													6	44					0.000157383	0.00173811	0.000157383	1	0
DCLRE1A	9937	broad.mit.edu	37	10	115603995	115603995	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:115603995C>T	uc001law.2	-	5	3305	c.2387G>A	c.(2386-2388)GGT>GAT	p.G796D		NM_014881	NP_055696	Q6PJP8	DCR1A_HUMAN	DNA cross-link repair 1A	796					cell division|mitosis	nucleus	hydrolase activity			skin(2)	2				Epithelial(162;0.0157)|all cancers(201;0.0171)		CATGACAGCACCTGGACAGCT	0.423								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					15	49					0	0	0.000422831	0	0
C10orf118	55088	broad.mit.edu	37	10	115885777	115885777	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:115885777C>G	uc001lbb.1	-	15	3133	c.2481G>C	c.(2479-2481)CGG>CGC	p.R827R	C10orf118_uc009xyd.1_Intron|C10orf118_uc001lbc.1_Silent_p.R827R|C10orf118_uc009xye.1_RNA	NM_018017	NP_060487	Q7Z3E2	CJ118_HUMAN	CTCL tumor antigen L14-2	827										ovary(2)	2		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0161)|all cancers(201;0.0397)		TGATGCCACCCCGTCTACTTA	0.368													4	90					0	0	3.59834e-05	0	0
FAM160B1	57700	broad.mit.edu	37	10	116593056	116593056	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:116593056G>C	uc001lcb.2	+	3	524	c.189G>C	c.(187-189)CTG>CTC	p.L63L	FAM160B1_uc001lcc.2_Silent_p.L63L	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	63										lung(1)	1						TAGATATACTGGTTCAAGAAG	0.358													4	100					0	0	0.00024832	0	0
ATRNL1	26033	broad.mit.edu	37	10	117308989	117308989	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:117308989G>C	uc001lcg.2	+	26	4124	c.3738G>C	c.(3736-3738)CTG>CTC	p.L1246L	ATRNL1_uc010qsm.1_Silent_p.L375L|ATRNL1_uc010qsn.1_RNA	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1246	Helical; (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		CCTTATTGCTGGTGGCTGCTG	0.323													4	76					0	0	3.59834e-05	0	0
PNLIPRP3	119548	broad.mit.edu	37	10	118203952	118203952	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:118203952G>C	uc001lcl.3	+	4	484	c.383G>C	c.(382-384)CGG>CCG	p.R128P		NM_001011709	NP_001011709	Q17RR3	LIPR3_HUMAN	pancreatic lipase-related protein 3 precursor	128					lipid catabolic process	extracellular region	triglyceride lipase activity			ovary(1)	1				all cancers(201;0.0131)		AACGGTTCACGGGAATACATC	0.328													4	94					0	0	0.00024832	0	0
INPP5F	22876	broad.mit.edu	37	10	121556256	121556256	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:121556256C>G	uc001leo.2	+	7	865	c.699C>G	c.(697-699)CCC>CCG	p.P233P		NM_014937	NP_055752	Q9Y2H2	SAC2_HUMAN	inositol polyphosphate-5-phosphatase F	233	SAC.						phosphoric ester hydrolase activity			ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00205)|BRCA - Breast invasive adenocarcinoma(275;0.158)		GGATTATCCCCATGATCCAAG	0.413													4	161					0	0	3.59834e-05	0	0
BTBD16	118663	broad.mit.edu	37	10	124034614	124034614	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:124034614G>C	uc001lgc.1	+	2	269	c.18G>C	c.(16-18)ACG>ACC	p.T6T	BTBD16_uc001lgd.1_Silent_p.T4T	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	6										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				TGTCGAACACGGTGAGTAGAT	0.413													4	114					0	0	8.12818e-05	0	0
DMBT1	1755	broad.mit.edu	37	10	124380664	124380664	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:124380664C>G	uc001lgk.1	+	41	5095	c.4989C>G	c.(4987-4989)ACC>ACG	p.T1663T	DMBT1_uc001lgl.1_Silent_p.T1653T|DMBT1_uc001lgm.1_Silent_p.T1035T|DMBT1_uc009xzz.1_Silent_p.T1663T|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Silent_p.T366T|DMBT1_uc009yac.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1663	SRCR 13.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CCTGGGGAACCGTGTGTGATG	0.607													4	175					0	0	3.59834e-05	0	0
PSTK	118672	broad.mit.edu	37	10	124746441	124746442	+	Silent	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:124746441_124746442CC>AA	uc001lgy.1	+	5	1280_1281	c.840_841CC>AA	c.(838-843)CTCCGA>CTAAGA	p.280_281LR>LR		NM_153336	NP_699167	Q8IV42	PSTK_HUMAN	phosphoseryl-tRNA kinase	280_281							ATP binding|kinase activity			liver(1)	1		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.0686)|COAD - Colon adenocarcinoma(40;0.0725)		ATCAGACACTCCGAAGGATTGT	0.342													5	64					0	0	6.4e-05	0	0
ACADSB	36	broad.mit.edu	37	10	124813240	124813240	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:124813240C>G	uc001lhb.2	+	11	1375	c.1258C>G	c.(1258-1260)CAG>GAG	p.Q420E	ACADSB_uc010qub.1_Missense_Mutation_p.Q318E	NM_001609	NP_001600	P45954	ACDSB_HUMAN	acyl-Coenzyme A dehydrogenase, short/branched	420					branched chain family amino acid catabolic process|fatty acid metabolic process	mitochondrial matrix	flavin adenine dinucleotide binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3		all_neural(114;0.0765)|Colorectal(57;0.102)|all_lung(145;0.11)|Lung NSC(174;0.163)		Colorectal(40;0.0811)|COAD - Colon adenocarcinoma(40;0.0835)	L-Isoleucine(DB00167)	TTCCAACATCCAGTTGAACAC	0.388													4	99					0	0	3.59834e-05	0	0
CPXM2	119587	broad.mit.edu	37	10	125528043	125528043	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:125528043C>G	uc001lhk.1	-	9	1623	c.1298G>C	c.(1297-1299)GGG>GCG	p.G433A	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	433					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		GGCCATTACCCCTTCGTAGGC	0.612													4	41					0	0	8.12818e-05	0	0
CTBP2	1488	broad.mit.edu	37	10	126678261	126678261	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:126678261C>T	uc009yak.2	-	11	1451	c.1164G>A	c.(1162-1164)CCG>CCA	p.P388P	CTBP2_uc009yal.2_Silent_p.P388P|CTBP2_uc001lif.3_Silent_p.P388P|CTBP2_uc001lih.3_Silent_p.P388P|CTBP2_uc001lid.3_Silent_p.P456P|CTBP2_uc001lie.3_Silent_p.P928P	NM_001329	NP_001320	P56545	CTBP2_HUMAN	C-terminal binding protein 2 isoform 1	388					negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent|viral genome replication|white fat cell differentiation	cell junction|synapse|transcriptional repressor complex	NAD binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|protein binding				0		all_lung(145;0.0132)|Lung NSC(174;0.0193)|all_neural(114;0.116)|Colorectal(57;0.173)		Colorectal(40;0.00572)|COAD - Colon adenocarcinoma(40;0.0127)|GBM - Glioblastoma multiforme(135;0.147)		CGATGCCTGGCGGATATCTAA	0.522													8	46					0	0	0.000442599	0	0
DOCK1	1793	broad.mit.edu	37	10	129179590	129179590	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:129179590C>G	uc001ljt.2	+	37	3766	c.3702C>G	c.(3700-3702)ACC>ACG	p.T1234T	DOCK1_uc010qun.1_Silent_p.T1255T|DOCK1_uc009yaq.2_Silent_p.T229T	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1234	DHR-2.				apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		ATAACTACACCGAAGCGGCTT	0.363													4	114					0	0	0.00024832	0	0
MKI67	4288	broad.mit.edu	37	10	129903076	129903076	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:129903076T>C	uc001lke.2	-	13	7223	c.7028A>G	c.(7027-7029)AAA>AGA	p.K2343R	MKI67_uc001lkf.2_Missense_Mutation_p.K1983R|MKI67_uc009yav.1_Missense_Mutation_p.K1918R|MKI67_uc009yaw.1_Missense_Mutation_p.K1493R	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2343	16 X 122 AA approximate repeats.|12.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TTGTGGAGATTTGCAGGCTAT	0.517													5	259					0	0	0.000978159	0	0
MKI67	4288	broad.mit.edu	37	10	129904336	129904336	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:129904336G>T	uc001lke.2	-	13	5963	c.5768C>A	c.(5767-5769)ACT>AAT	p.T1923N	MKI67_uc001lkf.2_Missense_Mutation_p.T1563N|MKI67_uc009yav.1_Missense_Mutation_p.T1498N|MKI67_uc009yaw.1_Missense_Mutation_p.T1073N	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1923	16 X 122 AA approximate repeats.|8.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				CTCCACTGGAGTCCCCACAAA	0.483													7	193					1.12685e-05	0.000138146	0.000274275	1	0
MKI67	4288	broad.mit.edu	37	10	129911758	129911758	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:129911758C>A	uc001lke.2	-	8	1784	c.1589G>T	c.(1588-1590)GGA>GTA	p.G530V	MKI67_uc001lkf.2_Missense_Mutation_p.G170V|MKI67_uc009yav.1_Missense_Mutation_p.G105V|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	530					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TGGGGCTTCTCCCCTTTTGAG	0.473													7	123					0.000978159	0.00917326	0.000978159	1	0
STK32C	282974	broad.mit.edu	37	10	134144973	134144973	+	Translation_Start_Site	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:134144973G>T	uc009ybc.1	-	1	384	c.-183C>A	c.(-185--181)CTCTG>CTATG		STK32C_uc010quu.1_Missense_Mutation_p.L90M|STK32C_uc009ybd.1_Intron|LRRC27_uc001llf.2_5'Flank|LRRC27_uc010quv.1_5'Flank|LRRC27_uc010quw.1_5'Flank|LRRC27_uc001llg.2_5'Flank|LRRC27_uc001lli.2_5'Flank			Q86UX6	ST32C_HUMAN	RecName: Full=Serine/threonine-protein kinase 32C;          Short=PKE;          EC=2.7.11.1; AltName: Full=YANK3;								ATP binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|breast(1)	5		all_cancers(35;2.72e-11)|all_epithelial(44;2.33e-08)|Lung NSC(174;0.000855)|all_lung(145;0.00146)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.112)|Melanoma(40;0.124)|Glioma(114;0.203)		Epithelial(32;3.99e-05)|all cancers(32;5.58e-05)|OV - Ovarian serous cystadenocarcinoma(35;9.96e-05)|BRCA - Breast invasive adenocarcinoma(275;0.222)		CCTCCGTCCAGAGGCAGCCTT	0.368													6	49					0.000274275	0.00290969	0.000274275	1	0
Unknown	0	broad.mit.edu	37	10	134647603	134647603	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:134647603G>C	uc010qux.1	-	41	6069	c.6069C>G	c.(6067-6069)GCC>GCG	p.A2023A		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		TCCCTGAATCGGCAACAACCG	0.522													4	128					0	0	0.00024832	0	0
LOC653544	653544	broad.mit.edu	37	10	135491123	135491123	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:135491123G>A	uc010qvi.1	+	1	845	c.734G>A	c.(733-735)GGC>GAC	p.G245D		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	245						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCCCACACCGGCGCGTGGGGA	0.786													6	90					0	0	0.000442599	0	0
B4GALNT4	338707	broad.mit.edu	37	11	373814	373814	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:373814C>G	uc001lpb.2	+	8	778	c.769C>G	c.(769-771)CAC>GAC	p.H257D		NM_178537	NP_848632	Q76KP1	B4GN4_HUMAN	beta	257	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			pancreas(1)	1		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CGGCTCGGACCACGTGGAAGT	0.652													4	48					0	0	0.00024832	0	0
SIGIRR	59307	broad.mit.edu	37	11	407845	407845	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:407845C>A	uc001lpd.2	-	5	783	c.453G>T	c.(451-453)CAG>CAT	p.Q151H	SIGIRR_uc001lpf.2_Missense_Mutation_p.Q151H|SIGIRR_uc001lpe.1_Missense_Mutation_p.Q151H|SIGIRR_uc001lpg.2_Missense_Mutation_p.Q151H	NM_001135054	NP_001128526	Q6IA17	SIGIR_HUMAN	single Ig IL-1R-related molecule	151	Cytoplasmic (Potential).				acute-phase response|innate immune response|negative regulation of chemokine biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of lipopolysaccharide-mediated signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity	integral to membrane	protein binding|transmembrane receptor activity				0		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CATACGCGTCCTGGTACCAGA	0.687													6	81					0.000442599	0.00445669	0.000442599	1	0
C11orf35	256329	broad.mit.edu	37	11	554988	554988	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:554988C>G	uc001lpx.2	-	14	1960	c.1897G>C	c.(1897-1899)GGC>CGC	p.G633R	uc001lpy.2_5'Flank	NM_173573	NP_775844	Q8IXW0	CK035_HUMAN	hypothetical protein LOC256329	633								p.G633R(1)		pancreas(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.18e-28)|Epithelial(43;6.93e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.97e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CCCTAGGCGCCGCGGCAGGTG	0.567													2	3					0	0	0.00024832	0	0
AP2A2	161	broad.mit.edu	37	11	1006548	1006548	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:1006548G>T	uc001lss.2	+	17	2408	c.2227G>T	c.(2227-2229)GGT>TGT	p.G743C	AP2A2_uc001lst.1_Missense_Mutation_p.G744C|AP2A2_uc009yco.1_RNA	NM_012305	NP_036437	O94973	AP2A2_HUMAN	adaptor-related protein complex 2, alpha 2	743					axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|cytosol	lipid binding|protein transporter activity				0		all_cancers(49;9.46e-06)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.75e-24)|BRCA - Breast invasive adenocarcinoma(625;5.73e-05)|Lung(200;0.0696)|LUSC - Lung squamous cell carcinoma(625;0.082)		TATCTTTTATGGTAATAAGAC	0.423													7	122					0.000442599	0.00445669	0.000442599	1	0
MUC6	4588	broad.mit.edu	37	11	1025193	1025193	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:1025193G>C	uc001lsw.2	-	23	3025	c.2974C>G	c.(2974-2976)CGT>GGT	p.R992G		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	992	VWFD 3.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TGGGAGGCACGGGCGATCCTG	0.667													4	113					0	0	0.000157383	0	0
MUC2	4583	broad.mit.edu	37	11	1093681	1093681	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:1093681G>C	uc001lsx.1	+	32	12601	c.12574G>C	c.(12574-12576)GGC>CGC	p.G4192R		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4192				GTQ -> TGS (in Ref. 4).		inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	TGGAAGCACGGGGCCCCCCAC	0.617													4	107					0	0	0.00024832	0	0
MUC5B	727897	broad.mit.edu	37	11	1256418	1256418	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:1256418A>G	uc009ycr.1	+	38	4837	c.4711A>G	c.(4711-4713)AGC>GGC	p.S1571G	MUC5B_uc009yct.1_Missense_Mutation_p.S912G|MUC5B_uc001ltb.2_Missense_Mutation_p.S915G|MUC5B_uc001lta.2_Missense_Mutation_p.S580G	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	912	VWFC 1.|VWFD 3.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CGATCGCTACAGCTTTGAAGG	0.667													3	49					0	0	0.000602214	0	0
MUC5B	727897	broad.mit.edu	37	11	1270354	1270354	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:1270354C>G	uc009ycr.1	+	51	13789	c.13663C>G	c.(13663-13665)CCA>GCA	p.P4555A	MUC5B_uc001ltb.2_Missense_Mutation_p.P4085A	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4082	7 X Cys-rich subdomain repeats.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ACCCCCTTCCCCAGGGACGAC	0.701													4	104					0	0	0.000157383	0	0
SLC22A18	5002	broad.mit.edu	37	11	2924647	2924647	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:2924647G>T	uc001lwx.2	+	2	290	c.72G>T	c.(70-72)TCG>TCT	p.S24S	SLC22A18AS_uc001lwv.3_Intron|SLC22A18AS_uc001lww.3_Intron|SLC22A18_uc001lwy.2_Silent_p.S24S|SLC22A18_uc001lwz.2_Silent_p.S24S	NM_183233	NP_899056	Q96BI1	S22AI_HUMAN	tumor suppressing subtransferable candidate 5	24					excretion|organic cation transport	apical plasma membrane|cytoplasmic part|integral to membrane|nuclear envelope	drug:hydrogen antiporter activity|symporter activity|ubiquitin protein ligase binding			central_nervous_system(2)|ovary(1)	3		all_epithelial(84;0.000124)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)|all_lung(207;0.198)		BRCA - Breast invasive adenocarcinoma(625;0.00256)|LUSC - Lung squamous cell carcinoma(625;0.192)		GCCGGTCCTCGGTCATCTTGC	0.652													7	223					0.000978159	0.00917326	0.000978159	1	0
NAP1L4	4676	broad.mit.edu	37	11	2981037	2981037	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:2981037A>G	uc001lxc.2	-	9	850	c.709T>C	c.(709-711)TTT>CTT	p.F237L	NAP1L4_uc009ydt.2_RNA|NAP1L4_uc010qxm.1_Missense_Mutation_p.F237L|NAP1L4_uc010qxn.1_Missense_Mutation_p.F237L	NM_005969	NP_005960	Q99733	NP1L4_HUMAN	nucleosome assembly protein 1-like 4	237					nucleosome assembly	chromatin assembly complex|cytoplasm	unfolded protein binding			ovary(1)	1		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00301)|LUSC - Lung squamous cell carcinoma(625;0.211)		TCAAAGGAAAAGGGATCAGCC	0.373													4	342					0	0	0.00024832	0	0
NAP1L4	4676	broad.mit.edu	37	11	2985923	2985924	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:2985923_2985924GG>TT	uc001lxc.2	-	8	733_734	c.592_593CC>AA	c.(592-594)CCT>AAT	p.P198N	NAP1L4_uc010qxm.1_Missense_Mutation_p.P198N|NAP1L4_uc010qxn.1_Missense_Mutation_p.P198N|SNORA54_uc001lxd.1_5'Flank	NM_005969	NP_005960	Q99733	NP1L4_HUMAN	nucleosome assembly protein 1-like 4	198					nucleosome assembly	chromatin assembly complex|cytoplasm	unfolded protein binding			ovary(1)	1		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00301)|LUSC - Lung squamous cell carcinoma(625;0.211)		AGGCTGTCCAGGGTCAGAAAAT	0.411													15	318					0	0	6.4e-05	0	0
NAP1L4	4676	broad.mit.edu	37	11	2985982	2985982	+	Splice_Site	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:2985982C>A	uc001lxc.2	-	8	676	c.535_splice	c.e8-1	p.E179_splice	NAP1L4_uc010qxm.1_Splice_Site_p.E179_splice|NAP1L4_uc010qxn.1_Splice_Site_p.E179_splice|SNORA54_uc001lxd.1_5'Flank	NM_005969	NP_005960	Q99733	NP1L4_HUMAN	nucleosome assembly protein 1-like 4						nucleosome assembly	chromatin assembly complex|cytoplasm	unfolded protein binding			ovary(1)	1		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00301)|LUSC - Lung squamous cell carcinoma(625;0.211)		CATCATATTCCTAATCAAAAA	0.398													9	314					0.000673444	0.00655963	0.000673444	1	0
NAP1L4	4676	broad.mit.edu	37	11	2993377	2993377	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:2993377G>C	uc001lxc.2	-	5	411	c.270C>G	c.(268-270)GAC>GAG	p.D90E	NAP1L4_uc010qxm.1_Missense_Mutation_p.D90E|NAP1L4_uc010qxn.1_Missense_Mutation_p.D90E	NM_005969	NP_005960	Q99733	NP1L4_HUMAN	nucleosome assembly protein 1-like 4	90					nucleosome assembly	chromatin assembly complex|cytoplasm	unfolded protein binding			ovary(1)	1		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00301)|LUSC - Lung squamous cell carcinoma(625;0.211)		TTCTTTCCAAGTCATGTACCT	0.318													4	428					0	0	3.59834e-05	0	0
CARS	833	broad.mit.edu	37	11	3039116	3039116	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:3039116C>G	uc001lxh.2	-	14	1523	c.1449G>C	c.(1447-1449)TGG>TGC	p.W483C	CARS_uc001lxe.2_Missense_Mutation_p.W473C|CARS_uc001lxf.2_Missense_Mutation_p.W566C|CARS_uc001lxg.2_Missense_Mutation_p.W483C|CARS_uc010qxo.1_Missense_Mutation_p.W566C|CARS_uc010qxp.1_Missense_Mutation_p.W496C	NM_001751	NP_001742	P49589	SYCC_HUMAN	cysteinyl-tRNA synthetase isoform b	483					cysteinyl-tRNA aminoacylation	cytoplasm|cytosol	ATP binding|cysteine-tRNA ligase activity|metal ion binding|protein homodimerization activity|protein homodimerization activity|tRNA binding|tRNA binding		CARS/ALK(5)	soft_tissue(5)|ovary(2)	7		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00317)|LUSC - Lung squamous cell carcinoma(625;0.218)	L-Cysteine(DB00151)	CTTCTTCTCCCCACTTCTCAA	0.423			T	ALK	ALCL								4	93					0	0	8.12818e-05	0	0
RRM1	6240	broad.mit.edu	37	11	4139665	4139665	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:4139665C>A	uc001lyw.3	+	8	1085	c.766C>A	c.(766-768)CGG>AGG	p.R256R	RRM1_uc009yej.2_RNA|RRM1_uc009yeh.1_Silent_p.R159R|RRM1_uc009yei.2_Silent_p.R216R|RRM1_uc010qyc.1_Silent_p.R159R|RRM1_uc010qyd.1_5'UTR	NM_001033	NP_001024	P23921	RIR1_HUMAN	ribonucleoside-diphosphate reductase M1 chain	256		Allosteric effector binding, determines substrate specificity.			deoxyribonucleotide biosynthetic process|DNA replication|nucleobase, nucleoside and nucleotide interconversion	cytosol|nucleoplasm|ribonucleoside-diphosphate reductase complex	ATP binding|ribonucleoside-diphosphate reductase activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00502)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0848)|LUSC - Lung squamous cell carcinoma(625;0.205)	Clofarabine(DB00631)|Fludarabine(DB01073)|Gemcitabine(DB00441)|Hydroxyurea(DB01005)	GAGTTGTATTCGGGCTACTGG	0.393													6	142					3.59834e-05	0.000429	3.59834e-05	1	0
OR52K1	390036	broad.mit.edu	37	11	4511013	4511013	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:4511013G>C	uc001lza.1	+	1	883	c.883G>C	c.(883-885)GGA>CGA	p.G295R		NM_001005171	NP_001005171	Q8NGK4	O52K1_HUMAN	olfactory receptor, family 52, subfamily K,	295	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.76e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0836)|LUSC - Lung squamous cell carcinoma(625;0.192)		TATCATATATGGAGTCAAGAC	0.448													4	116					0	0	8.12818e-05	0	0
OR51B4	79339	broad.mit.edu	37	11	5322903	5322903	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:5322903G>C	uc010qza.1	-	1	274	c.274C>G	c.(274-276)CAT>GAT	p.H92D	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGGCAGCATGGGCAATCTCC	0.507													4	78					0	0	0.00024832	0	0
OR51B6	390058	broad.mit.edu	37	11	5373043	5373043	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:5373043C>T	uc010qzb.1	+	1	306	c.306C>T	c.(304-306)ATC>ATT	p.I102I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCTATTTTATCCATACTCTTT	0.483													14	82					0	0	0.000566183	0	0
OR51M1	390059	broad.mit.edu	37	11	5410947	5410947	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:5410947G>T	uc010qzc.1	+	1	319	c.319G>T	c.(319-321)GGA>TGA	p.G107*	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	107						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TATCTACTTTGGAGCGTGTCA	0.512													7	148					3.86212e-05	0.000457303	0.000673444	1	0
UBQLNL	143630	broad.mit.edu	37	11	5536305	5536305	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:5536305C>G	uc001maz.3	-	1	1652	c.1367G>C	c.(1366-1368)TGG>TCG	p.W456S	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	456										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		CTGCTGCCTCCACTGTTCACT	0.493													4	116					0	0	3.59834e-05	0	0
TRIM5	85363	broad.mit.edu	37	11	5699587	5699587	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:5699587G>T	uc001mbm.1	-	4	848	c.591C>A	c.(589-591)AGC>AGA	p.S197R	TRIM5_uc001mbq.1_Missense_Mutation_p.S197R|TRIM5_uc001mbl.1_RNA|TRIM5_uc001mbn.2_Missense_Mutation_p.S197R|TRIM5_uc001mbo.2_Missense_Mutation_p.S197R|TRIM5_uc001mbp.2_Missense_Mutation_p.S197R	NM_033034	NP_149023	Q9C035	TRIM5_HUMAN	tripartite motif protein TRIM5 isoform alpha	197	Potential.				interspecies interaction between organisms|protein trimerization|response to virus	cytoplasm|cytoplasmic mRNA processing body	ligase activity|protein binding|protein homodimerization activity|zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)|Lung NSC(207;0.138)|all_lung(207;0.221)		Epithelial(150;7.21e-09)|BRCA - Breast invasive adenocarcinoma(625;0.139)		GCAGCTCATTGCTCTCCTCCC	0.468													9	165					3.86212e-05	0.000457303	0.000673444	1	0
TRIM22	10346	broad.mit.edu	37	11	5719768	5719768	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:5719768T>C	uc001mbr.2	+	4	1020	c.743T>C	c.(742-744)ATG>ACG	p.M248T	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Missense_Mutation_p.M216T|TRIM22_uc009yes.2_Missense_Mutation_p.M244T|TRIM22_uc010qzm.1_Missense_Mutation_p.M76T|TRIM22_uc009yeu.2_Missense_Mutation_p.M59T	NM_006074	NP_006065	Q8IYM9	TRI22_HUMAN	tripartite motif-containing 22	248	Potential.				immune response|interspecies interaction between organisms|protein trimerization|response to virus	Cajal body|Golgi apparatus|nuclear speck	ligase activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;7.54e-09)|BRCA - Breast invasive adenocarcinoma(625;0.14)		TCAGTAGAGATGCTGCAGGTA	0.542													6	34					0	0	3.59834e-05	0	0
OR56A3	390083	broad.mit.edu	37	11	5969438	5969438	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:5969438C>T	uc010qzt.1	+	1	862	c.862C>T	c.(862-864)CCT>TCT	p.P288S		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCATGTCATTCCTGCAGCCCT	0.483													11	89					0	0	0.000673444	0	0
FAM160A2	84067	broad.mit.edu	37	11	6239229	6239229	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:6239229G>A	uc001mcl.3	-	9	1946	c.1587C>T	c.(1585-1587)TCC>TCT	p.S529S	FAM160A2_uc001mck.3_Silent_p.S543S|FAM160A2_uc001mcm.2_Silent_p.S529S	NM_001098794	NP_001092264	Q8N612	F16A2_HUMAN	hypothetical protein LOC84067 isoform 2	529					early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|protein transport	FHF complex	protein binding			skin(2)	2						TGGAGGCGGGGGATGCAGAAA	0.647													4	36					0	0	0.00024832	0	0
SMPD1	6609	broad.mit.edu	37	11	6413117	6413117	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:6413117G>T	uc001mcw.2	+	2	996	c.822G>T	c.(820-822)ATG>ATT	p.M274I	SMPD1_uc001mcv.1_Intron|SMPD1_uc009yex.2_RNA|SMPD1_uc001mcx.2_Missense_Mutation_p.M274I|SMPD1_uc009yew.2_Missense_Mutation_p.M273I	NM_000543	NP_000534	P17405	ASM_HUMAN	sphingomyelin phosphodiesterase 1, acid	272					cell death|ceramide biosynthetic process|negative regulation of MAP kinase activity|nervous system development|positive regulation of protein dephosphorylation|signal transduction|sphingomyelin catabolic process|termination of signal transduction	lysosome	hydrolase activity, acting on glycosyl bonds|sphingomyelin phosphodiesterase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;4.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)	Desipramine(DB01151)	CTTTTGATATGGTGTACTGGA	0.607													7	108					0.000978159	0.00917326	0.000978159	1	0
SMPD1	6609	broad.mit.edu	37	11	6414574	6414574	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:6414574G>A	uc001mcw.2	+	3	1394	c.1220G>A	c.(1219-1221)TGG>TAG	p.W407*	SMPD1_uc001mcv.1_RNA|SMPD1_uc009yex.2_Intron|SMPD1_uc001mcx.2_Intron|SMPD1_uc009yew.2_Nonsense_Mutation_p.W406*	NM_000543	NP_000534	P17405	ASM_HUMAN	sphingomyelin phosphodiesterase 1, acid	405					cell death|ceramide biosynthetic process|negative regulation of MAP kinase activity|nervous system development|positive regulation of protein dephosphorylation|signal transduction|sphingomyelin catabolic process|termination of signal transduction	lysosome	hydrolase activity, acting on glycosyl bonds|sphingomyelin phosphodiesterase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;4.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)	Desipramine(DB01151)	CAGCTCCAGTGGCTGGTGGGG	0.572													4	49					0	0	3.59834e-05	0	0
HPX	3263	broad.mit.edu	37	11	6458755	6458755	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:6458755G>A	uc001mdg.2	-	6	679	c.618C>T	c.(616-618)TTC>TTT	p.F206F	HPX_uc001mdf.2_5'UTR|HPX_uc009yfc.2_RNA	NM_000613	NP_000604	P02790	HEMO_HUMAN	hemopexin precursor	206	Hemopexin-like 3.				cellular iron ion homeostasis|interspecies interaction between organisms	extracellular space	heme transporter activity|metal ion binding|protein binding				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;5.46e-08)|BRCA - Breast invasive adenocarcinoma(625;0.19)		CGAAGCGCAGGAATTGGTTAC	0.612													7	48					0	0	8.12818e-05	0	0
SYT9	143425	broad.mit.edu	37	11	7334931	7334931	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:7334931G>T	uc001mfe.2	+	3	1040	c.803G>T	c.(802-804)CGG>CTG	p.R268L	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_Intron	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	268	Cytoplasmic (Potential).|C2 1.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		CTTCCTGATCGGAAAACAAAA	0.433													7	165					0.000274275	0.00290969	0.000274275	1	0
PPFIBP2	8495	broad.mit.edu	37	11	7661006	7661006	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:7661006G>C	uc001mfj.3	+	15	1668	c.1280G>C	c.(1279-1281)GGG>GCG	p.G427A	PPFIBP2_uc010rbb.1_Missense_Mutation_p.G350A|PPFIBP2_uc001mfk.1_Intron|PPFIBP2_uc010rbc.1_Missense_Mutation_p.G350A|PPFIBP2_uc010rbd.1_Missense_Mutation_p.G269A|PPFIBP2_uc010rbe.1_Missense_Mutation_p.G315A|PPFIBP2_uc001mfl.3_Missense_Mutation_p.G284A|PPFIBP2_uc009yfj.1_Missense_Mutation_p.G71A	NM_003621	NP_003612	Q8ND30	LIPB2_HUMAN	PTPRF interacting protein, binding protein 2	427					cell communication|DNA integration	intracellular	DNA binding|integrase activity|protein binding			ovary(2)|breast(2)	4				Epithelial(150;2.01e-07)|BRCA - Breast invasive adenocarcinoma(625;0.236)		ACTTTACCTGGGAAGCTTTCA	0.557													4	131					0	0	0.000157383	0	0
OR5P3	120066	broad.mit.edu	37	11	7847334	7847334	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:7847334G>A	uc010rbg.1	-	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AATGGCAGAGGAAAATGTACA	0.408													11	90					0	0	0.000978159	0	0
DENND5A	23258	broad.mit.edu	37	11	9167297	9167297	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:9167297G>T	uc001mhl.2	-	17	3178	c.2923C>A	c.(2923-2925)CCA>ACA	p.P975T	DENND5A_uc001mhk.2_Missense_Mutation_p.P318T|DENND5A_uc010rbw.1_Missense_Mutation_p.P975T|DENND5A_uc010rbx.1_RNA	NM_015213	NP_056028	Q6IQ26	DEN5A_HUMAN	RAB6 interacting protein 1	975	PLAT.									liver(1)	1						CAGATCCATGGGTTGGCAGTG	0.483													7	148					0.000274275	0.00290969	0.000274275	1	0
DENND5A	23258	broad.mit.edu	37	11	9187442	9187442	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:9187442C>A	uc001mhl.2	-	11	2479	c.2224G>T	c.(2224-2226)GTG>TTG	p.V742L	DENND5A_uc001mhk.2_Missense_Mutation_p.V85L|DENND5A_uc010rbw.1_Missense_Mutation_p.V742L|DENND5A_uc010rbx.1_RNA	NM_015213	NP_056028	Q6IQ26	DEN5A_HUMAN	RAB6 interacting protein 1	742										liver(1)	1						TGGGCAATCACTGATGGAGAG	0.468													6	88					0.000157383	0.00173811	0.000157383	1	0
COPB1	1315	broad.mit.edu	37	11	14490887	14490887	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:14490887G>T	uc001mli.2	-	15	2267	c.1960C>A	c.(1960-1962)CAA>AAA	p.Q654K	COPB1_uc001mlg.2_Missense_Mutation_p.Q654K|COPB1_uc001mlh.2_Missense_Mutation_p.Q654K	NM_016451	NP_057535	P53618	COPB_HUMAN	coatomer protein complex, subunit beta 1	654					COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|ER-Golgi intermediate compartment|plasma membrane	protein binding|structural molecule activity			ovary(1)|central_nervous_system(1)	2						CTTACCTTTTGGGATAATTTC	0.264													8	195					0.000673444	0.00655963	0.000673444	1	0
NUCB2	4925	broad.mit.edu	37	11	17333593	17333594	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:17333593_17333594CC>AA	uc001mmw.2	+	10	1083_1084	c.838_839CC>AA	c.(838-840)CCT>AAT	p.P280N	NUCB2_uc001mmv.1_Missense_Mutation_p.P280N|NUCB2_uc009ygz.2_Missense_Mutation_p.P280N	NM_005013	NP_005004	P80303	NUCB2_HUMAN	nucleobindin 2 precursor	280	Binds to necdin (By similarity).					cytosol|ER-Golgi intermediate compartment|extracellular space|Golgi apparatus|plasma membrane	calcium ion binding|DNA binding				0						AGTATATGACCCTAAAAATGAA	0.297													9	275					0	0	6.4e-05	0	0
ABCC8	6833	broad.mit.edu	37	11	17432084	17432084	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:17432084C>A	uc001mnc.2	-	22	2799	c.2673G>T	c.(2671-2673)CAG>CAT	p.Q891H		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	891	ABC transporter 1.|Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GGGGCAGGTACTGTAGCTTGT	0.587													7	175					0.000978159	0.00917326	0.000978159	1	0
ABCC8	6833	broad.mit.edu	37	11	17474817	17474818	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:17474817_17474818CC>AA	uc001mnc.2	-	7	1150_1151	c.1024_1025GG>TT	c.(1024-1026)GGG>TTG	p.G342L	ABCC8_uc010rcy.1_Missense_Mutation_p.G341L	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	342	Extracellular (By similarity).|ABC transmembrane type-1 1.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	AAAGTAAACCCCGAGAAATTGT	0.48													10	182					0	0	6.4e-05	0	0
USH1C	10083	broad.mit.edu	37	11	17519757	17519757	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:17519757G>C	uc001mnf.2	-	19	1651	c.1542C>G	c.(1540-1542)ACC>ACG	p.T514T	USH1C_uc001mne.2_Silent_p.T814T|USH1C_uc009yhb.2_Silent_p.T495T|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Silent_p.T478T	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	514	PDZ 3.				equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						CCTCAGCCAGGGTGTAGTCTG	0.577													4	117					0	0	0.00024832	0	0
LOC494141	494141	broad.mit.edu	37	11	18231828	18231828	+	RNA	SNP	T	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:18231828T>A	uc009yhh.2	+	2		c.852T>A			LOC494141_uc001mnx.3_RNA|LOC494141_uc009yhi.1_RNA	NR_026541				Homo sapiens cDNA FLJ29025 fis, clone PRS03236.												0						AAGGAGCATCTGCCTACCGCG	0.428													14	105					0	0	0.000151284	0	0
LDHC	3948	broad.mit.edu	37	11	18456337	18456337	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:18456337C>G	uc001mon.3	+	5	581	c.469C>G	c.(469-471)CGT>GGT	p.R157G	LDHC_uc001mom.3_Missense_Mutation_p.R157G|LDHC_uc009yhp.2_Missense_Mutation_p.R157G|LDHC_uc001moo.3_Missense_Mutation_p.R41G|LDHC_uc009yhq.2_RNA|LDHC_uc009yhr.2_Missense_Mutation_p.R41G	NM_017448	NP_059144	P07864	LDHC_HUMAN	L-lactate dehydrogenase C	157					glycolysis	cytoplasm	binding|L-lactate dehydrogenase activity				0					NADH(DB00157)	ACCTGTAACTCGTGTAATTGG	0.368													4	197					0	0	3.59834e-05	0	0
LDHAL6A	160287	broad.mit.edu	37	11	18500303	18500303	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:18500303G>T	uc001mop.1	+	8	1146	c.885G>T	c.(883-885)CTG>CTT	p.L295L	LDHAL6A_uc001moq.2_Silent_p.L295L	NM_001144071	NP_001137543	Q6ZMR3	LDH6A_HUMAN	lactate dehydrogenase A-like 6A	295					glycolysis	cytoplasm	binding|L-lactate dehydrogenase activity				0					NADH(DB00157)	CATGTATCCTGGGAGAGAATG	0.378													9	217					1.58986e-06	2.00859e-05	0.000673444	1	0
LDHAL6A	160287	broad.mit.edu	37	11	18500397	18500397	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:18500397C>A	uc001mop.1	+	8	1240	c.979C>A	c.(979-981)CAG>AAG	p.Q327K	LDHAL6A_uc001moq.2_Missense_Mutation_p.Q327K	NM_001144071	NP_001137543	Q6ZMR3	LDH6A_HUMAN	lactate dehydrogenase A-like 6A	327					glycolysis	cytoplasm	binding|L-lactate dehydrogenase activity				0					NADH(DB00157)	TTGGGAAATTCAGAAGGAGCT	0.353													9	304					0.000978159	0.00917326	0.000978159	1	0
ANO5	203859	broad.mit.edu	37	11	22277042	22277042	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:22277042C>A	uc001mqi.2	+	13	1623	c.1306C>A	c.(1306-1308)CAC>AAC	p.H436N	ANO5_uc001mqj.2_Missense_Mutation_p.H435N	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	436	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						TATGTGTAAACACAGGAAATT	0.423													5	149					0.000157383	0.00173811	0.000157383	1	0
CCDC34	91057	broad.mit.edu	37	11	27360394	27360394	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:27360394C>A	uc001mrh.1	-	6	1150	c.1096G>T	c.(1096-1098)GGA>TGA	p.G366*		NM_030771	NP_110398	Q96HJ3	CCD34_HUMAN	coiled-coil domain containing 34 isoform 1	366											0						CACAGAGTTCCAAGGCAAAGA	0.363													7	148					2.17888e-05	0.000264662	0.000442599	1	0
RAG2	5897	broad.mit.edu	37	11	36614457	36614457	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:36614457G>C	uc001mwv.3	-	2	1450	c.1262C>G	c.(1261-1263)CCT>CGT	p.P421R	RAG1_uc001mwt.2_Intron|C11orf74_uc010rfd.1_5'Flank|C11orf74_uc001mww.1_5'Flank|C11orf74_uc001mwx.1_5'Flank|C11orf74_uc001mwy.1_5'Flank|C11orf74_uc001mwz.1_5'Flank|C11orf74_uc010rfe.1_5'Flank	NM_000536	NP_000527	P55895	RAG2_HUMAN	recombination activating gene 2	421	PHD-type; atypical.				chromatin modification|pre-B cell allelic exclusion|somatic diversification of immunoglobulins|T cell differentiation in thymus|V(D)J recombination	nucleus	chromatin binding|DNA binding|endonuclease activity|methylated histone residue binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|zinc ion binding			skin(3)|ovary(1)|pancreas(1)	5	all_lung(20;0.226)	all_hematologic(20;0.00756)				ATCACAAGTAGGGCAGCATGT	0.443									Familial_Hemophagocytic_Lymphohistiocytosis				4	153					0	0	0.00024832	0	0
EXT2	2132	broad.mit.edu	37	11	44148448	44148448	+	Missense_Mutation	SNP	C	G	G	rs141035971	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:44148448C>G	uc001mxz.2	+	6	1356	c.1022C>G	c.(1021-1023)CCG>CGG	p.P341R	EXT2_uc010rfo.1_Missense_Mutation_p.P369R|EXT2_uc001mxy.2_Missense_Mutation_p.P354R|EXT2_uc009ykt.2_Missense_Mutation_p.P341R|EXT2_uc001mya.2_Missense_Mutation_p.P374R	NM_207122	NP_997005	Q93063	EXT2_HUMAN	exostosin 2 isoform 2	341	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity			lung(2)|breast(2)|skin(1)	5						GGCTGTGTCCCGGTTGTCATT	0.498			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses				5	161					0	0	8.12818e-05	0	0
AMBRA1	55626	broad.mit.edu	37	11	46563784	46563784	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:46563784C>G	uc010rgu.1	-	7	2143	c.1783G>C	c.(1783-1785)GAG>CAG	p.E595Q	AMBRA1_uc010rgt.1_Missense_Mutation_p.E161Q|AMBRA1_uc009ylc.1_Missense_Mutation_p.E595Q|AMBRA1_uc001ncu.1_Missense_Mutation_p.E505Q|AMBRA1_uc001ncv.2_Missense_Mutation_p.E505Q|AMBRA1_uc001ncw.2_Missense_Mutation_p.E505Q|AMBRA1_uc001ncx.2_Missense_Mutation_p.E595Q	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	595	Ser-rich.				autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		GAACTAGCCTCGCCAGAGGAG	0.587													4	48					0	0	0.00024832	0	0
DDB2	1643	broad.mit.edu	37	11	47236768	47236768	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:47236768C>G	uc001neb.2	+	1	276	c.81C>G	c.(79-81)CCC>CCG	p.P27P	DDB2_uc001nec.2_RNA|DDB2_uc009yli.1_Silent_p.P27P|DDB2_uc001ned.2_RNA|DDB2_uc001nee.2_Silent_p.P27P|DDB2_uc001nef.2_5'UTR|DDB2_uc001neg.2_5'Flank|DDB2_uc001neh.2_5'Flank	NM_000107	NP_000098	Q92466	DDB2_HUMAN	damage-specific DNA binding protein 2	27					nucleotide-excision repair, DNA damage removal|protein autoubiquitination|protein polyubiquitination|response to UV	nucleoplasm|protein complex	damaged DNA binding|protein binding			kidney(2)|ovary(1)	3						GCAGGAGTCCCCTGGAGCTGG	0.597			Mis|N			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				4	181					0	0	0.000157383	0	0
DDB2	1643	broad.mit.edu	37	11	47256142	47256142	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:47256142G>C	uc001neb.2	+	5	816	c.621G>C	c.(619-621)CTG>CTC	p.L207L	DDB2_uc001nec.2_RNA|DDB2_uc009yli.1_Silent_p.L143L|DDB2_uc001ned.2_RNA|DDB2_uc001nee.2_Intron|DDB2_uc001nef.2_Intron|DDB2_uc001neg.2_Silent_p.L66L|DDB2_uc001neh.2_RNA	NM_000107	NP_000098	Q92466	DDB2_HUMAN	damage-specific DNA binding protein 2	207					nucleotide-excision repair, DNA damage removal|protein autoubiquitination|protein polyubiquitination|response to UV	nucleoplasm|protein complex	damaged DNA binding|protein binding			kidney(2)|ovary(1)	3						TTTGTAGCCTGGATGTGTCTG	0.363			Mis|N			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				4	135					0	0	3.59834e-05	0	0
NR1H3	10062	broad.mit.edu	37	11	47283237	47283237	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:47283237G>C	uc009ylm.2	+	6	1069	c.848G>C	c.(847-849)CGG>CCG	p.R283P	NR1H3_uc009yll.1_Missense_Mutation_p.R289P|NR1H3_uc010rhk.1_Missense_Mutation_p.R289P|NR1H3_uc001nek.2_Missense_Mutation_p.R238P|NR1H3_uc001nej.2_Intron|NR1H3_uc001nel.2_Missense_Mutation_p.R238P|NR1H3_uc001nen.3_Intron|NR1H3_uc001nem.2_Missense_Mutation_p.R283P|NR1H3_uc001nep.2_Intron	NM_005693	NP_005684	Q13133	NR1H3_HUMAN	nuclear receptor subfamily 1, group H, member 3	283	Ligand-binding (Potential).				apoptotic cell clearance|cellular response to lipopolysaccharide|cholesterol homeostasis|negative regulation of cholesterol storage|negative regulation of inflammatory response|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of lipid transport|negative regulation of macrophage activation|negative regulation of pancreatic juice secretion|negative regulation of pinocytosis|negative regulation of secretion of lysosomal enzymes|negative regulation of transcription from RNA polymerase II promoter|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of cholesterol homeostasis|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor biosynthetic process|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of triglyceride biosynthetic process|regulation of circadian rhythm|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to progesterone stimulus|triglyceride homeostasis	nuclear chromatin|nucleoplasm	cholesterol binding|steroid hormone receptor activity|sterol response element binding|transcription coactivator activity|zinc ion binding			ovary(2)|lung(1)	3						CAGCTCAGCCGGGAGGACCAG	0.582													4	81					0	0	3.59834e-05	0	0
MADD	8567	broad.mit.edu	37	11	47308052	47308052	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:47308052C>G	uc001ner.1	+	15	2811	c.2620C>G	c.(2620-2622)CGA>GGA	p.R874G	MADD_uc001neq.2_Missense_Mutation_p.R874G|MADD_uc001nev.1_Missense_Mutation_p.R831G|MADD_uc001nes.1_Missense_Mutation_p.R831G|MADD_uc001net.1_Missense_Mutation_p.R874G|MADD_uc009yln.1_Missense_Mutation_p.R831G|MADD_uc001neu.1_Missense_Mutation_p.R831G|MADD_uc001nex.2_Missense_Mutation_p.R874G|MADD_uc001nez.2_Missense_Mutation_p.R831G|MADD_uc001new.2_Missense_Mutation_p.R874G	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	874					activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		CAAAGGTGCCCGAGAGAAGGC	0.547													5	107					0	0	3.59834e-05	0	0
PSMC3	5702	broad.mit.edu	37	11	47446202	47446202	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:47446202G>C	uc001nfh.2	-	4	540	c.346C>G	c.(346-348)CAG>GAG	p.Q116E	PSMC3_uc009ylr.1_Missense_Mutation_p.Q74E	NM_002804	NP_002795	P17980	PRS6A_HUMAN	proteasome 26S ATPase subunit 3	116					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|nucleoside-triphosphatase activity|protein binding|transcription coactivator activity|transcription corepressor activity			ovary(4)	4				Lung(87;0.0932)|BRCA - Breast invasive adenocarcinoma(625;0.13)		CCCTTCCTCTGGGAGTCCAGG	0.527													4	114					0	0	0.000157383	0	0
CELF1	10658	broad.mit.edu	37	11	47504246	47504246	+	Splice_Site	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:47504246C>A	uc001nfl.2	-	6	697	c.687_splice	c.e6+1	p.A229_splice	CELF1_uc001nfm.2_Splice_Site_p.A229_splice|CELF1_uc001nfn.2_Splice_Site_p.A229_splice|CELF1_uc001nfo.1_Splice_Site_p.A255_splice|CELF1_uc010rhm.1_Splice_Site_p.A228_splice|CELF1_uc001nfp.2_Splice_Site_p.A256_splice|CELF1_uc001nfq.1_Splice_Site_p.A229_splice|CELF1_uc001nfr.1_Splice_Site_p.A229_splice	NM_001025596	NP_001020767	Q92879	CELF1_HUMAN	CUG triplet repeat, RNA-binding protein 1						embryo development|mRNA splice site selection|regulation of RNA splicing|RNA interference	cytoplasm|nucleus|ribonucleoprotein complex	BRE binding|mRNA binding|nucleotide binding|translation repressor activity, nucleic acid binding			central_nervous_system(2)|ovary(1)	3						CAAAGACTCACTGCTAAATAC	0.498													5	97					0.000274275	0.00290969	0.000274275	1	0
OR4C11	219429	broad.mit.edu	37	11	55371689	55371689	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:55371689C>T	uc010rii.1	-	1	161	c.161G>A	c.(160-162)GGA>GAA	p.G54E		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	54	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CATGGGGCTTCCTAGTGTCCG	0.398													17	71					0	0	0.000566183	0	0
OR5L1	219437	broad.mit.edu	37	11	55579114	55579114	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:55579114C>G	uc001nhw.1	+	1	172	c.172C>G	c.(172-174)CCC>GCC	p.P58A		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				GCTCCACACCCCCATGTACTT	0.463													4	198					0	0	0.00024832	0	0
OR8J3	81168	broad.mit.edu	37	11	55904408	55904408	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:55904408G>T	uc010riz.1	-	1	787	c.787C>A	c.(787-789)CAA>AAA	p.Q263K		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					TGGTTGGTTTGGGGCTGCAAA	0.428													6	128					0.000157383	0.00173811	0.000157383	1	0
OR5T3	390154	broad.mit.edu	37	11	56020415	56020415	+	Missense_Mutation	SNP	C	T	T	rs149435695		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:56020415C>T	uc010rjd.1	+	1	740	c.740C>T	c.(739-741)TCC>TTC	p.S247F		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	247	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					GTCCTCATTTCCTGTGATTTC	0.423													18	148					0	0	0.000132079	0	0
OR5M1	390168	broad.mit.edu	37	11	56380402	56380402	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:56380402G>C	uc001nja.1	-	1	577	c.577C>G	c.(577-579)CGT>GGT	p.R193G		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	193	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TTTTTGACACGGGTGTCAGAG	0.433													4	76					0	0	0.000157383	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57080298	57080298	+	Missense_Mutation	SNP	C	G	G	rs145463965		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:57080298C>G	uc001njr.2	-	4	2176	c.1864G>C	c.(1864-1866)GAG>CAG	p.E622Q	TNKS1BP1_uc001njs.2_Missense_Mutation_p.E622Q|TNKS1BP1_uc009ymd.1_Missense_Mutation_p.E73Q	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	622	Pro-rich.|Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				GCTGGCTGCTCCTGCCCCAGG	0.662													3	57					0	0	6.4e-05	0	0
PRG3	10394	broad.mit.edu	37	11	57146186	57146186	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:57146186G>T	uc001njv.1	-	4	585	c.475C>A	c.(475-477)CAG>AAG	p.Q159K		NM_006093	NP_006084	Q9Y2Y8	PRG3_HUMAN	proteoglycan 3 precursor	159	C-type lectin.				basophil activation|histamine biosynthetic process|immune response|leukotriene biosynthetic process|negative regulation of translation|neutrophil activation|positive regulation of interleukin-8 biosynthetic process|superoxide anion generation		sugar binding				0						ATCCAGACCTGGGCTTGGTTG	0.493													11	207					0.000422831	0.00445499	0.000422831	1	0
PRG2	5553	broad.mit.edu	37	11	57157408	57157408	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:57157408G>C	uc001njz.2	-	1	37	c.10C>G	c.(10-12)CCC>GCC	p.P4A	PRG2_uc001njw.1_RNA|PRG2_uc001njx.1_RNA|PRG2_uc001njy.1_RNA|PRG2_uc001nka.2_Missense_Mutation_p.P4A|PRG2_uc001nkb.2_Missense_Mutation_p.P4A|PRG2_uc001nkd.2_Missense_Mutation_p.P4A|PRG2_uc001nkc.2_Missense_Mutation_p.P4A|PRG2_uc001nke.2_Missense_Mutation_p.P284A	NM_002728	NP_002719	P13727	PRG2_HUMAN	proteoglycan 2 preproprotein	4					defense response to bacterium|immune response	extracellular region|transport vesicle	heparin binding|sugar binding			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	Sargramostim(DB00020)	AGAAGTAAGGGGAGTTTCATC	0.338													4	126					0	0	0.00024832	0	0
UBE2L6	9246	broad.mit.edu	37	11	57321973	57321973	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:57321973C>A	uc001nkn.1	-	3	343	c.247G>T	c.(247-249)GGA>TGA	p.G83*	UBE2L6_uc001nko.1_Nonsense_Mutation_p.G17*	NM_004223	NP_004214	O14933	UB2L6_HUMAN	ubiquitin-conjugating enzyme E2L 6 isoform 1	83					negative regulation of type I interferon production	cytosol	protein binding|ubiquitin-protein ligase activity			ovary(1)	1						CAAATCTGTCCGTTCTCGTCC	0.542													5	129					5.18039e-06	6.44204e-05	0.000157383	1	0
OR9Q2	219957	broad.mit.edu	37	11	57958326	57958326	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:57958326C>G	uc010rka.1	+	1	364	c.364C>G	c.(364-366)CGC>GGC	p.R122G		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				GGCCTATGACCGCTACACGGC	0.572													4	126					0	0	3.59834e-05	0	0
OR5B3	441608	broad.mit.edu	37	11	58170461	58170461	+	Missense_Mutation	SNP	C	G	G	rs115594096	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:58170461C>G	uc010rkf.1	-	1	422	c.422G>C	c.(421-423)CGT>CCT	p.R141P		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	141	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TATGGCCAGACGAGCACACAC	0.493													3	64					0	0	0.00024832	0	0
PATL1	219988	broad.mit.edu	37	11	59420043	59420043	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:59420043C>G	uc001noe.3	-	11	1463	c.1320G>C	c.(1318-1320)CTG>CTC	p.L440L	PATL1_uc009yms.1_Silent_p.L410L|PATL1_uc010rkw.1_Silent_p.L145L	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	440	Region H.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						ACAGTTTCTCCAGTTTTTCAA	0.438													4	142					0	0	0.000157383	0	0
STX3	6809	broad.mit.edu	37	11	59540739	59540739	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:59540739C>A	uc001nog.2	+	2	276	c.86C>A	c.(85-87)ACG>AAG	p.T29K	STX3_uc010rkx.1_Missense_Mutation_p.T29K|STX3_uc010rky.1_5'UTR	NM_004177	NP_004168	Q13277	STX3_HUMAN	syntaxin 3	29	Cytoplasmic (Potential).				cellular response to oxidative stress|intracellular protein transport|neuron projection development|neurotransmitter transport	apical plasma membrane|azurophil granule|cell-cell junction|growth cone|integral to membrane|plasma membrane enriched fraction|SNARE complex|specific granule	arachidonic acid binding|SNAP receptor activity			ovary(2)	2						ATCGACAACACGGCTTTTATG	0.378													7	217					0.000442599	0.00445669	0.000442599	1	0
MS4A7	58475	broad.mit.edu	37	11	60160255	60160255	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:60160255C>G	uc001npe.2	+	6	789	c.644C>G	c.(643-645)CCT>CGT	p.P215R	MS4A7_uc001npf.2_Missense_Mutation_p.P215R|MS4A7_uc001npg.2_Missense_Mutation_p.P170R|MS4A7_uc001nph.2_Missense_Mutation_p.P170R|MS4A14_uc001npi.2_Intron	NM_206939	NP_996822	Q9GZW8	MS4A7_HUMAN	membrane-spanning 4-domains, subfamily A, member	215	Cytoplasmic (Potential).					integral to membrane	receptor activity	p.N213_G216del(1)		ovary(1)|central_nervous_system(1)	2						TCCAACAACCCTGGGGTGAGT	0.463													4	88					0	0	3.59834e-05	0	0
ZP1	22917	broad.mit.edu	37	11	60637857	60637857	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:60637857C>A	uc001nqd.2	+	4	755	c.735C>A	c.(733-735)TGC>TGA	p.C245*	ZP1_uc001nqe.2_5'Flank	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	245	Extracellular (Potential).|P-type.				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						ACCTCCCCTGCATCGTGAGAA	0.493													4	45					0.000157383	0.00173811	0.000157383	1	0
SLC15A3	51296	broad.mit.edu	37	11	60714272	60714272	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:60714272C>A	uc001nqn.2	-	2	814	c.580G>T	c.(580-582)GCC>TCC	p.A194S	SLC15A3_uc001nqo.2_Missense_Mutation_p.A194S	NM_016582	NP_057666	Q8IY34	S15A3_HUMAN	solute carrier family 15, member 3	194					oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0						CGGCGGGTGGCGTCGCGGCCG	0.592													6	118					3.59834e-05	0.000429	3.59834e-05	1	0
CD5	921	broad.mit.edu	37	11	60886854	60886854	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:60886854C>G	uc009ynk.2	+	5	715	c.612C>G	c.(610-612)CTC>CTG	p.L204L		NM_014207	NP_055022	P06127	CD5_HUMAN	CD5 molecule precursor	204	Extracellular (Potential).|SRCR 2.				cell proliferation|cell recognition	integral to plasma membrane	scavenger receptor activity			ovary(1)	1		all_lung(304;5.94e-05)|Lung NSC(402;7.26e-05)		BRCA - Breast invasive adenocarcinoma(625;0.000946)|Lung(977;0.0086)|LUSC - Lung squamous cell carcinoma(625;0.0528)		GCAACAACCTCCAGTGTGGCT	0.607													3	75					0	0	0.000602214	0	0
C11orf66	220004	broad.mit.edu	37	11	61254657	61254657	+	Missense_Mutation	SNP	C	T	T	rs139486662		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:61254657C>T	uc001nru.1	+	11	1113	c.988C>T	c.(988-990)CGG>TGG	p.R330W	C11orf66_uc009ynq.1_Missense_Mutation_p.R310W	NM_145017	NP_659454	Q7Z5V6	CK066_HUMAN	IIIG9 protein	330										ovary(1)	1						CATGTATGTCCGGAGCCCCTG	0.557													5	159					0	0	8.12818e-05	0	0
FADS2	9415	broad.mit.edu	37	11	61630830	61630830	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:61630830C>A	uc001nsl.1	+	9	1207	c.1057C>A	c.(1057-1059)CGT>AGT	p.R353S	FADS2_uc001nsj.2_Missense_Mutation_p.R331S|FADS2_uc010rlo.1_Missense_Mutation_p.R322S|FADS2_uc001nsk.2_Missense_Mutation_p.R353S	NM_004265	NP_004256	O95864	FADS2_HUMAN	fatty acid desaturase 2	353	Cytoplasmic (Potential).				electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	heme binding			ovary(1)|pancreas(1)	2					Alpha-Linolenic Acid(DB00132)	GGAGGCCTACCGTGACTGGTT	0.567													6	58					0.000274275	0.00290969	0.000274275	1	0
FADS3	3995	broad.mit.edu	37	11	61644404	61644404	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:61644404C>A	uc001nsm.2	-	8	1070	c.917G>T	c.(916-918)CGC>CTC	p.R306L	FADS3_uc001nsn.2_Missense_Mutation_p.R182L	NM_021727	NP_068373	Q9Y5Q0	FADS3_HUMAN	fatty acid desaturase 3	306	Lumenal (Potential).				electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|membrane fraction	heme binding|oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water			ovary(1)|pancreas(1)	2						TAAGAAGAAGCGGGCATAGAA	0.622													4	11					3.59834e-05	0.000429	3.59834e-05	1	0
SCGB1D1	10648	broad.mit.edu	37	11	61959682	61959682	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:61959682C>G	uc001nsz.1	+	2	257	c.210C>G	c.(208-210)GCC>GCG	p.A70A		NM_006552	NP_006543	O95968	SG1D1_HUMAN	lipophilin A precursor	70						extracellular space	binding			skin(1)	1						ATACGATGGCCTATGAGAAAA	0.448													4	100					0	0	3.59834e-05	0	0
AHNAK	79026	broad.mit.edu	37	11	62295116	62295116	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:62295116C>G	uc001ntl.2	-	5	7073	c.6773G>C	c.(6772-6774)GGA>GCA	p.G2258A	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	2258					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TGGGCCCTCTCCTTTGAAGCC	0.527													4	277					0	0	3.59834e-05	0	0
AHNAK	79026	broad.mit.edu	37	11	62295157	62295157	+	Silent	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:62295157A>G	uc001ntl.2	-	5	7032	c.6732T>C	c.(6730-6732)CCT>CCC	p.P2244P	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	2244					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TTTTCATCTTAGGCATCTTCA	0.517													6	253					0	0	0.000274275	0	0
AHNAK	79026	broad.mit.edu	37	11	62295271	62295271	+	Silent	SNP	A	C	C	rs149402141	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:62295271A>C	uc001ntl.2	-	5	6918	c.6618T>G	c.(6616-6618)GTT>GTG	p.V2206V	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	2206					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CTACCTTGGGAACAGACACAT	0.493													6	275					0	0	0.000442599	0	0
AHNAK	79026	broad.mit.edu	37	11	62298005	62298005	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:62298005G>T	uc001ntl.2	-	5	4184	c.3884C>A	c.(3883-3885)CCA>CAA	p.P1295Q	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1295					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GCTCACATCTGGGACTTCAAC	0.542													8	258					0.000673444	0.00655963	0.000673444	1	0
BSCL2	26580	broad.mit.edu	37	11	62462156	62462156	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:62462156C>A	uc001nuo.1	-	4	746	c.322G>T	c.(322-324)GTT>TTT	p.V108F	BSCL2_uc009yoc.1_Missense_Mutation_p.V108F|BSCL2_uc001nup.2_Missense_Mutation_p.V108F|BSCL2_uc001nuq.1_Missense_Mutation_p.V108F|BSCL2_uc001nur.3_Missense_Mutation_p.V172F|BSCL2_uc009yod.2_Missense_Mutation_p.V172F|BSCL2_uc001nut.3_Missense_Mutation_p.V172F|HNRNPUL2_uc001nuu.1_RNA	NM_032667	NP_116056	Q96G97	BSCL2_HUMAN	seipin isoform 2	108	Lumenal (Potential).				cell death	integral to endoplasmic reticulum membrane					0						TCTAAGGTAACACGATACGGC	0.458											OREG0021029	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	254					0.000978159	0.00917326	0.000978159	1	0
TTC9C	283237	broad.mit.edu	37	11	62496379	62496379	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:62496379G>C	uc001nuy.2	+	1	428	c.59G>C	c.(58-60)CGG>CCG	p.R20P	HNRNPUL2_uc001nuu.1_5'Flank|HNRNPUL2_uc001nuw.2_5'Flank|TTC9C_uc001nux.2_Missense_Mutation_p.R153P	NM_173810	NP_776171	Q8N5M4	TTC9C_HUMAN	tetratricopeptide repeat domain 9C	20	TPR 1.						binding			ovary(1)|pancreas(1)	2						CAGCGCTACCGGGAAGGGAAG	0.577													4	73					0	0	0.00024832	0	0
SLC22A25	387601	broad.mit.edu	37	11	62948217	62948217	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:62948217C>T	uc001nwr.1	-	6	985	c.985G>A	c.(985-987)GAG>AAG	p.E329K	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Missense_Mutation_p.E329K	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	329	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						TGTGCTGCCTCCAGTTCTTGC	0.403													8	54					0	0	0.000274275	0	0
HRASLS5	117245	broad.mit.edu	37	11	63231055	63231055	+	Missense_Mutation	SNP	G	C	C	rs149377771		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:63231055G>C	uc001nwy.2	-	6	934	c.760C>G	c.(760-762)CTG>GTG	p.L254V	HRASLS5_uc001nwz.2_Missense_Mutation_p.L244V|HRASLS5_uc010rmq.1_Missense_Mutation_p.P237R|HRASLS5_uc009yos.2_RNA	NM_054108	NP_473449	Q96KN8	HRSL5_HUMAN	HRAS-like suppressor family, member 5 isoform 1	254										ovary(1)	1						CCTTCCATCAGGGCGTGCTCT	0.512													4	83					0	0	3.59834e-05	0	0
HRASLS2	54979	broad.mit.edu	37	11	63327632	63327632	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:63327632C>A	uc001nxg.1	-	2	102	c.43G>T	c.(43-45)GAG>TAG	p.E15*		NM_017878	NP_060348	Q9NWW9	HRSL2_HUMAN	HRAS-like suppressor 2	15					lipid catabolic process	cytoplasm	acyltransferase activity|hydrolase activity				0						CGAGAAATCTCAATCAGGTCT	0.517													8	135					0.000442599	0.00445669	0.000442599	1	0
RTN3	10313	broad.mit.edu	37	11	63486865	63486865	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:63486865G>T	uc001nxq.2	+	3	1078	c.891G>T	c.(889-891)CTG>CTT	p.L297L	RTN3_uc001nxo.2_Intron|RTN3_uc001nxm.2_Intron|RTN3_uc001nxn.2_Silent_p.L278L|RTN3_uc001nxp.2_Intron|RTN3_uc009yov.2_Silent_p.L185L|RTN3_uc010rmt.1_Intron|RTN3_uc010rmu.1_Intron	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	297					apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						TTTTTCCACTGAGAAATAAAG	0.438													7	106					0.000442599	0.00445669	0.000442599	1	0
MACROD1	28992	broad.mit.edu	37	11	63919787	63919787	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:63919787G>T	uc001nyh.2	-	2	496	c.377C>A	c.(376-378)CCG>CAG	p.P126Q		NM_014067	NP_054786	Q9BQ69	MACD1_HUMAN	MACRO domain containing 1	126											0						CTTCCATGTCGGGATCTTCTT	0.577													8	113					0.000978159	0.00917326	0.000978159	1	0
PLCB3	5331	broad.mit.edu	37	11	64031552	64031552	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:64031552C>G	uc001nzb.2	+	22	2620	c.2620C>G	c.(2620-2622)CGG>GGG	p.R874G	PLCB3_uc009ypg.1_Missense_Mutation_p.R874G|PLCB3_uc009yph.1_Missense_Mutation_p.R807G|PLCB3_uc009ypi.2_Missense_Mutation_p.R874G	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	874					intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						CCAGAGGGCCCGGCAGCTGGC	0.662													3	77					0	0	0.000602214	0	0
RPS6KA4	8986	broad.mit.edu	37	11	64128706	64128706	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:64128706C>A	uc001oae.2	+	5	646	c.563C>A	c.(562-564)ACG>AAG	p.T188K	RPS6KA4_uc001oad.2_Missense_Mutation_p.T188K|RPS6KA4_uc010rnl.1_Missense_Mutation_p.T125K|RPS6KA4_uc001oaf.2_Missense_Mutation_p.T188K|RPS6KA4_uc009ypp.2_Missense_Mutation_p.T188K	NM_003942	NP_003933	O75676	KS6A4_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	188	Protein kinase 1.				axon guidance|histone phosphorylation|interleukin-1-mediated signaling pathway|intracellular protein kinase cascade|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|magnesium ion binding|mitogen-activated protein kinase p38 binding|ribosomal protein S6 kinase activity			lung(3)|ovary(1)|breast(1)	5						GAGTTCCTGACGGAGGAGGTG	0.587													4	53					0.000442599	0.00445669	0.000442599	1	0
OVOL1	5017	broad.mit.edu	37	11	65561575	65561575	+	Silent	SNP	G	A	A	rs139751259	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:65561575G>A	uc001ofp.2	+	2	490	c.174G>A	c.(172-174)CCG>CCA	p.P58P	OVOL1_uc001ofq.2_5'UTR	NM_004561	NP_004552	O14753	OVOL1_HUMAN	OVO-like 1 binding protein	58					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				READ - Rectum adenocarcinoma(159;0.17)		CTTCCTGCCCGCTGGCTTTGA	0.642													6	90					0	0	3.59834e-05	0	0
OVOL1	5017	broad.mit.edu	37	11	65562583	65562583	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:65562583A>T	uc001ofp.2	+	4	891	c.575A>T	c.(574-576)CAC>CTC	p.H192L	OVOL1_uc001ofq.2_Missense_Mutation_p.H130L	NM_004561	NP_004552	O14753	OVOL1_HUMAN	OVO-like 1 binding protein	192	C2H2-type 3.				transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				READ - Rectum adenocarcinoma(159;0.17)		CTGGAGTCTCACCTCAAGAAG	0.612													4	42					0	0	0.00024832	0	0
SNX32	254122	broad.mit.edu	37	11	65618233	65618233	+	Silent	SNP	G	C	C	rs139718551	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:65618233G>C	uc001ofr.2	+	6	637	c.510G>C	c.(508-510)CGG>CGC	p.R170R		NM_152760	NP_689973	Q86XE0	SNX32_HUMAN	sorting nexin 6B	170					cell communication|protein transport		phosphatidylinositol binding				0				READ - Rectum adenocarcinoma(159;0.171)		TGAGTGTCCGGGGGAAGAACA	0.592													4	43					0	0	3.59834e-05	0	0
GSTP1	2950	broad.mit.edu	37	11	67352198	67352198	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:67352198C>A	uc001omf.2	+	4	436	c.187C>A	c.(187-189)CTG>ATG	p.L63M	GSTP1_uc001omg.1_Missense_Mutation_p.L44M	NM_000852	NP_000843	P09211	GSTP1_HUMAN	glutathione transferase	63	GST N-terminal.				anti-apoptosis|cellular response to lipopolysaccharide|central nervous system development|common myeloid progenitor cell proliferation|glutathione metabolic process|negative regulation of acute inflammatory response|negative regulation of ERK1 and ERK2 cascade|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 beta production|negative regulation of JUN kinase activity|negative regulation of leukocyte proliferation|negative regulation of monocyte chemotactic protein-1 production|negative regulation of necrotic cell death|negative regulation of nitric-oxide synthase 2 biosynthetic process|negative regulation of stress-activated MAPK cascade|negative regulation of tumor necrosis factor production|nitric oxide storage|positive regulation of superoxide anion generation|response to reactive oxygen species|xenobiotic metabolic process	cytosol|protein complex	dinitrosyl-iron complex binding|glutathione transferase activity|JUN kinase binding|kinase regulator activity|nitric oxide binding|S-nitrosoglutathione binding			ovary(1)	1					Ethacrynic acid(DB00903)|Glutathione(DB00143)	AGACCTCACCCTGTACCAGTC	0.637													6	80					0.000157383	0.00173811	0.000157383	1	0
UNC93B1	81622	broad.mit.edu	37	11	67765893	67765893	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:67765893C>A	uc001omw.1	-	6	797	c.717G>T	c.(715-717)ATG>ATT	p.M239I		NM_030930	NP_112192	Q9H1C4	UN93B_HUMAN	unc-93 homolog B1	239	Helical; (Potential).				innate immune response|intracellular protein transport|response to virus|toll-like receptor 3 signaling pathway|toll-like receptor 7 signaling pathway|toll-like receptor 9 signaling pathway	early phagosome|endoplasmic reticulum membrane|endosome|integral to membrane|lysosome					0						GGAAATAAATCATGGGCAGCT	0.567													9	170					0.000978159	0.00917326	0.000978159	1	0
SUV420H1	51111	broad.mit.edu	37	11	67957402	67957402	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:67957402C>G	uc001onm.1	-	2	398	c.142G>C	c.(142-144)GAG>CAG	p.E48Q	SUV420H1_uc009yse.1_5'UTR|SUV420H1_uc001onn.1_5'UTR|SUV420H1_uc009ysf.2_5'UTR|SUV420H1_uc001ono.1_Missense_Mutation_p.E48Q|SUV420H1_uc001onp.2_Missense_Mutation_p.E48Q|SUV420H1_uc010rqa.1_Missense_Mutation_p.E48Q|SUV420H1_uc001onq.2_Missense_Mutation_p.E48Q	NM_017635	NP_060105	Q4FZB7	SV421_HUMAN	suppressor of variegation 4-20 homolog 1 isoform	48					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			ovary(2)|kidney(1)	3						GACCTCCTCTCGACTGCATTT	0.418													4	247					0	0	3.59834e-05	0	0
CPT1A	1374	broad.mit.edu	37	11	68527091	68527091	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:68527091C>G	uc001oog.3	-	18	2351	c.2181G>C	c.(2179-2181)GTG>GTC	p.V727V	CPT1A_uc001oof.3_Silent_p.V727V|CPT1A_uc009ysj.2_Intron	NM_001876	NP_001867	P50416	CPT1A_HUMAN	carnitine palmitoyltransferase 1A liver isoform	727	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			skin(2)	2	Esophageal squamous(3;3.28e-14)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.142)		L-Carnitine(DB00583)|Perhexiline(DB01074)	GGTTCTCTCCCACAAGGATGT	0.428													4	106					0	0	3.59834e-05	0	0
IGHMBP2	3508	broad.mit.edu	37	11	68704052	68704052	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:68704052C>T	uc001ook.1	+	13	2206	c.2104C>T	c.(2104-2106)CTG>TTG	p.L702L	IGHMBP2_uc001ool.1_Silent_p.L326L|IGHMBP2_uc001oom.1_Silent_p.L280L	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	702	SS DNA-binding (By similarity).				cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			TGGGAAGTCTCTGGCCTCTGA	0.652													6	42					0	0	0.000157383	0	0
PPFIA1	8500	broad.mit.edu	37	11	70171012	70171012	+	Silent	SNP	C	G	G	rs144282210	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:70171012C>G	uc001opo.2	+	4	624	c.426C>G	c.(424-426)ACC>ACG	p.T142T	PPFIA1_uc001opn.1_Silent_p.T142T|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opq.1_5'Flank	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	142					cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			TTAGGATGACCGTGGTGAAGA	0.473													4	162					0	0	0.00024832	0	0
NUMA1	4926	broad.mit.edu	37	11	71735361	71735361	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:71735361G>C	uc001orl.1	-	5	339	c.167C>G	c.(166-168)CCG>CGG	p.P56R	NUMA1_uc001ork.1_Missense_Mutation_p.P56R|NUMA1_uc001orm.1_Missense_Mutation_p.P56R|NUMA1_uc009ysx.1_Missense_Mutation_p.P56R|NUMA1_uc001oro.1_Missense_Mutation_p.P56R|NUMA1_uc009ysy.1_Missense_Mutation_p.P56R|NUMA1_uc001orp.2_Missense_Mutation_p.P56R|NUMA1_uc001orq.2_Missense_Mutation_p.P56R	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	56					G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						CTCTGACACCGGCTGCTTCAA	0.483			T	RARA	APL								5	145					0	0	0.000157383	0	0
INPPL1	3636	broad.mit.edu	37	11	71948619	71948619	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:71948619G>C	uc001osf.2	+	26	3478	c.3331G>C	c.(3331-3333)GGG>CGG	p.G1111R	INPPL1_uc001osg.2_Missense_Mutation_p.G869R	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	1111					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						CACTTTCCTGGGGGAAGTGGC	0.701													3	48					0	0	6.4e-05	0	0
CLPB	81570	broad.mit.edu	37	11	72005736	72005737	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:72005736_72005737CC>AG	uc001osj.2	-	14	1627_1628	c.1577_1578GG>CT	c.(1576-1578)GGG>GCT	p.G526A	CLPB_uc010rqx.1_Missense_Mutation_p.G481A|CLPB_uc010rqy.1_Missense_Mutation_p.G467A|CLPB_uc001osk.2_Missense_Mutation_p.G496A|CLPB_uc009ytg.2_Intron|CLPB_uc010rqz.1_Missense_Mutation_p.G325A|CLPB_uc001osi.2_Missense_Mutation_p.G134A	NM_030813	NP_110440	Q9H078	CLPB_HUMAN	caseinolytic peptidase B	526					cellular response to heat		ATP binding|nucleoside-triphosphatase activity|protein binding			pancreas(1)	1						TCTGGACATCCCCTGTGGAGAA	0.5													9	312					0	0	6.4e-05	0	0
ARAP1	116985	broad.mit.edu	37	11	72397193	72397193	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:72397193C>G	uc001osu.2	-	34	4418	c.4229G>C	c.(4228-4230)CGG>CCG	p.R1410P	ARAP1_uc001osv.2_Missense_Mutation_p.R1399P|ARAP1_uc001osr.2_Missense_Mutation_p.R1170P|ARAP1_uc001oss.2_Missense_Mutation_p.R1165P|ARAP1_uc009yth.2_Missense_Mutation_p.R1093P|ARAP1_uc010rre.1_Missense_Mutation_p.R1154P	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1410					actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						AGGCACTGCCCGGGACACGCG	0.637													4	239					0	0	0.000157383	0	0
ARAP1	116985	broad.mit.edu	37	11	72421546	72421546	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:72421546C>A	uc001osu.2	-	10	1489	c.1300G>T	c.(1300-1302)GGA>TGA	p.G434*	ARAP1_uc001osv.2_Nonsense_Mutation_p.G434*|ARAP1_uc001osr.2_Nonsense_Mutation_p.G194*|ARAP1_uc001oss.2_Nonsense_Mutation_p.G189*|ARAP1_uc009yth.2_Nonsense_Mutation_p.G189*|ARAP1_uc010rre.1_Nonsense_Mutation_p.G189*	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	434					actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						CCTGGAACTCCCAGCAGATAA	0.642													8	229					0.000978159	0.00917326	0.000978159	1	0
STARD10	10809	broad.mit.edu	37	11	72470316	72470316	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:72470316G>C	uc001osy.2	-	3	609	c.318C>G	c.(316-318)GCC>GCG	p.A106A	ARAP1_uc001osv.2_Intron|STARD10_uc001osz.3_Silent_p.A106A|STARD10_uc001ota.2_Silent_p.A60A|STARD10_uc001otb.2_Silent_p.A106A	NM_006645	NP_006636	Q9Y365	PCTL_HUMAN	START domain containing 10	106	START.										0			BRCA - Breast invasive adenocarcinoma(5;7.08e-07)			CTGTCAAGCGGGCGATGTCAA	0.567													4	261					0	0	0.00024832	0	0
FCHSD2	9873	broad.mit.edu	37	11	72560920	72560920	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:72560920G>T	uc009ytl.2	-	14	1544	c.1323C>A	c.(1321-1323)ACC>ACA	p.T441T	FCHSD2_uc010rrg.1_Silent_p.T305T|FCHSD2_uc001oth.3_Silent_p.T385T|FCHSD2_uc001oti.2_Silent_p.T400T	NM_014824	NP_055639	O94868	FCSD2_HUMAN	FCH and double SH3 domains 2	441							protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(5;3.3e-05)			CTTCTCTTTCGGTATCTGCAT	0.388													13	293					3.45872e-05	0.000417197	0.000422831	1	0
POLD3	10714	broad.mit.edu	37	11	74340304	74340304	+	Silent	SNP	T	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:74340304T>G	uc001ovf.1	+	9	1017	c.942T>G	c.(940-942)ACT>ACG	p.T314T	POLD3_uc009yua.1_Silent_p.T208T	NM_006591	NP_006582	Q15054	DPOD3_HUMAN	DNA-directed DNA polymerase delta 3	314					base-excision repair|DNA strand elongation involved in DNA replication|DNA synthesis involved in DNA repair|mismatch repair|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm	DNA-directed DNA polymerase activity|protein binding			kidney(2)|ovary(1)	3	Breast(11;3.21e-06)					CAAAGGAAACTGAAAACATGA	0.393													4	149					0	0	0.000602214	0	0
ARRB1	408	broad.mit.edu	37	11	74988418	74988418	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:74988418G>T	uc001owe.1	-	9	915	c.693C>A	c.(691-693)ATC>ATA	p.I231I	ARRB1_uc001owf.1_Silent_p.I231I	NM_004041	NP_004032	P49407	ARRB1_HUMAN	arrestin beta 1 isoform A	231					G-protein coupled receptor internalization|histone H4 acetylation|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|platelet activation|positive regulation of ERK1 and ERK2 cascade|positive regulation of histone acetylation|positive regulation of Rho protein signal transduction|positive regulation of transcription from RNA polymerase II promoter|post-Golgi vesicle-mediated transport|proteasomal ubiquitin-dependent protein catabolic process|protein transport|protein ubiquitination|signal transduction|stress fiber assembly|transcription from RNA polymerase II promoter	chromatin|coated pit|cytoplasmic vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|membrane fraction|nucleus|plasma membrane|pseudopodium|soluble fraction	angiotensin receptor binding|enzyme inhibitor activity|GTPase activator activity|insulin-like growth factor receptor binding|transcription factor binding|transcription regulatory region DNA binding|ubiquitin protein ligase binding			breast(2)	2						CTGAGATCTTGATCTTCTTCA	0.537													7	156					3.07112e-06	3.84493e-05	0.000978159	1	0
LRRC32	2615	broad.mit.edu	37	11	76376961	76376961	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:76376961G>A	uc001oxq.3	-	2	281	c.38C>T	c.(37-39)ACC>ATC	p.T13I	LRRC32_uc001oxr.3_Missense_Mutation_p.T13I|LRRC32_uc010rsf.1_Missense_Mutation_p.T13I	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	13						integral to plasma membrane					0						CAGGCCTAGGGTCAGCAGGGC	0.607													6	106					0	0	0.000978159	0	0
ALG8	79053	broad.mit.edu	37	11	77823718	77823718	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:77823718C>A	uc001oza.1	-	8	941	c.876G>T	c.(874-876)TTG>TTT	p.L292F	ALG8_uc001oyz.1_Missense_Mutation_p.L292F|ALG8_uc009yux.1_Missense_Mutation_p.L190F	NM_024079	NP_076984	Q9BVK2	ALG8_HUMAN	dolichyl pyrophosphate Glc1Man9GlcNAc2	292					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	alpha-1,3-mannosyltransferase activity|dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			ovary(2)|pancreas(1)	3	all_cancers(14;3.62e-19)|all_epithelial(13;1.27e-21)|Breast(9;8.51e-17)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;9.66e-25)			GCACTTTGTCCAAAGCATTGT	0.443													6	61					1.06961e-07	1.39386e-06	0.000157383	1	0
ODZ4	26011	broad.mit.edu	37	11	78369177	78369177	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:78369177C>A	uc001ozl.3	-	34	8699	c.8236G>T	c.(8236-8238)GAG>TAG	p.E2746*	ODZ4_uc001ozk.3_Nonsense_Mutation_p.E971*|ODZ4_uc009yvb.1_Intron	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2746	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GGGTACTGCTCGACAGAGATC	0.597													6	153					2.0095e-06	2.53297e-05	8.12818e-05	1	0
C11orf82	220042	broad.mit.edu	37	11	82643509	82643509	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:82643509G>C	uc001ozt.2	+	6	1373	c.1129G>C	c.(1129-1131)GGT>CGT	p.G377R	C11orf82_uc010rsr.1_Missense_Mutation_p.G76R|C11orf82_uc010rss.1_Missense_Mutation_p.G76R|C11orf82_uc009yvd.2_Intron	NM_145018	NP_659455	Q8IXT1	NOXIN_HUMAN	nitric oxide-inducible gene protein	377					apoptosis|cell cycle arrest	cytoplasm|nucleus				ovary(2)	2						TCAGCATCATGGTATAGATAC	0.463													4	274					0	0	3.59834e-05	0	0
ANKRD42	338699	broad.mit.edu	37	11	82938834	82938834	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:82938834G>A	uc001ozz.1	+	7	1171	c.749G>A	c.(748-750)GGG>GAG	p.G250E	ANKRD42_uc010rsv.1_Missense_Mutation_p.G278E|ANKRD42_uc001paa.2_Missense_Mutation_p.G278E|ANKRD42_uc001pab.1_Missense_Mutation_p.G277E	NM_182603	NP_872409	Q8N9B4	ANR42_HUMAN	ankyrin repeat domain 42	250	ANK 7.									skin(1)	1						GGTGATTTGGGGATGCTTAAG	0.353													7	135					0	0	0.000978159	0	0
DLG2	1740	broad.mit.edu	37	11	84245717	84245717	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:84245717G>C	uc001paj.2	-	2	403	c.100C>G	c.(100-102)CAC>GAC	p.H34D	DLG2_uc010rsz.1_Missense_Mutation_p.H34D|DLG2_uc010rta.1_Missense_Mutation_p.H34D|DLG2_uc001pak.2_Missense_Mutation_p.H139D|DLG2_uc001pal.1_Missense_Mutation_p.H34D	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	34						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				CTTACTTCGTGGGTTAGTCGA	0.403													4	139					0	0	0.00024832	0	0
CCDC81	60494	broad.mit.edu	37	11	86126232	86126232	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:86126232A>G	uc001pbx.1	+	13	1996	c.1568A>G	c.(1567-1569)AAG>AGG	p.K523R	CCDC81_uc001pbw.1_Missense_Mutation_p.K433R|CCDC81_uc010rtq.1_Missense_Mutation_p.K306R|CCDC81_uc001pby.1_Missense_Mutation_p.K258R	NM_001156474	NP_001149946	Q6ZN84	CCD81_HUMAN	coiled-coil domain containing 81 isoform 1	523										skin(1)	1		Acute lymphoblastic leukemia(157;5.51e-06)|all_hematologic(158;0.00535)				GAAAAGCAAAAGCGAGAACAA	0.493													3	101					0	0	3.59834e-05	0	0
GRM5	2915	broad.mit.edu	37	11	88258513	88258513	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:88258513C>G	uc001pcq.2	-	8	2890	c.2690G>C	c.(2689-2691)GGG>GCG	p.G897A	GRM5_uc009yvm.2_Intron	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	897	Cytoplasmic (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	CCCCATACTCCCTTTGGGGGT	0.483													4	189					0	0	0.000157383	0	0
FOLH1B	219595	broad.mit.edu	37	11	89420530	89420530	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:89420530G>A	uc001pda.2	+	9	1058	c.532G>A	c.(532-534)GAA>AAA	p.E178K		NM_153696	NP_710163	Q9HBA9	FOH1B_HUMAN	folate hydrolase 1B	178					proteolysis	cytoplasm	dipeptidase activity|metal ion binding|metallopeptidase activity			ovary(3)|skin(2)|central_nervous_system(1)	6						AAGCCCTGATGAAGGCTTTGA	0.343													7	54					0	0	0.000157383	0	0
UBTFL1	642623	broad.mit.edu	37	11	89819453	89819453	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:89819453G>A	uc010rub.1	+	1	336	c.336G>A	c.(334-336)AAG>AAA	p.K112K		NM_001143975	NP_001137447	P0CB47	UBFL1_HUMAN	upstream binding transcription factor, RNA	112	HMG box 1.				multicellular organismal development	cytoplasm|nucleus	DNA binding				0						GCTTCTTCAAGGAGAGTTGGC	0.448													6	17					0	0	3.59834e-05	0	0
FAT3	120114	broad.mit.edu	37	11	92085756	92085756	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:92085756C>G	uc001pdj.3	+	1	495	c.478C>G	c.(478-480)CCC>GCC	p.P160A		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	160	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTTGTTTTCACCCACAACATA	0.413										TCGA Ovarian(4;0.039)			4	209					0	0	0.00024832	0	0
FAT3	120114	broad.mit.edu	37	11	92085776	92085776	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:92085776C>G	uc001pdj.3	+	1	515	c.498C>G	c.(496-498)ACC>ACG	p.T166T		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	166	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ACTCTGTTACCATAGCAGAAA	0.403										TCGA Ovarian(4;0.039)			4	219					0	0	3.59834e-05	0	0
FAT3	120114	broad.mit.edu	37	11	92533086	92533086	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:92533086G>T	uc001pdj.3	+	9	6924	c.6907G>T	c.(6907-6909)GGG>TGG	p.G2303W		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2303	Cadherin 21.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATCTCTTATTGGGACACCTGT	0.368										TCGA Ovarian(4;0.039)			16	421					0.000958276	0.00917326	0.000958276	1	0
FAT3	120114	broad.mit.edu	37	11	92577213	92577213	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:92577213C>A	uc001pdj.3	+	18	10697	c.10680C>A	c.(10678-10680)ACC>ACA	p.T3560T	FAT3_uc001pdi.3_5'UTR	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3560	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCATTGTCACCATGGAGGATG	0.488										TCGA Ovarian(4;0.039)			10	262					5.50884e-06	6.81381e-05	0.00010058	1	0
FAT3	120114	broad.mit.edu	37	11	92577357	92577357	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:92577357G>T	uc001pdj.3	+	18	10841	c.10824G>T	c.(10822-10824)CTG>CTT	p.L3608L	FAT3_uc001pdi.3_Silent_p.L48L	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3608	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCATCGCCCTGGGAGGCCTGG	0.498										TCGA Ovarian(4;0.039)			9	301					0.000151284	0.00173001	0.000151284	1	0
SLC36A4	120103	broad.mit.edu	37	11	92895883	92895883	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:92895883G>C	uc001pdn.2	-	9	1123	c.1026C>G	c.(1024-1026)CCC>CCG	p.P342P	SLC36A4_uc001pdm.2_Silent_p.P207P	NM_152313	NP_689526	Q6YBV0	S36A4_HUMAN	solute carrier family 36 (proton/amino acid	342					L-alanine transport|proline transport|tryptophan transport	integral to membrane	symporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				ATACATCTTGGGGAAGATTTA	0.313													7	208					0	0	0.000157383	0	0
MRE11A	4361	broad.mit.edu	37	11	94201008	94201008	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:94201008G>T	uc001peu.2	-	10	1258	c.1069C>A	c.(1069-1071)CAG>AAG	p.Q357K	MRE11A_uc001pev.2_Missense_Mutation_p.Q357K|MRE11A_uc009ywj.2_Missense_Mutation_p.Q360K|MIR548L_hsa-mir-548l|MI0006361_5'Flank	NM_005591	NP_005582	P49959	MRE11_HUMAN	meiotic recombination 11 homolog A isoform 1	357					DNA duplex unwinding|double-strand break repair via homologous recombination|double-strand break repair via nonhomologous end joining|negative regulation of DNA endoreduplication|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|sister chromatid cohesion|telomere maintenance via telomerase	Mre11 complex|nucleoplasm	3'-5' exonuclease activity|double-stranded DNA binding|manganese ion binding|protein C-terminus binding|single-stranded DNA specific endodeoxyribonuclease activity			breast(4)|lung(1)	5		Acute lymphoblastic leukemia(157;2.37e-05)|all_hematologic(158;0.00824)				TTCTCTGGCTGGTGAGAATTA	0.323								Homologous_recombination	Ataxia-Telangiectasia-Like_Disorder				9	134					0.000442599	0.00445669	0.000442599	1	0
CCDC82	79780	broad.mit.edu	37	11	96117676	96117676	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:96117676G>C	uc009ywp.2	-	1	479	c.236C>G	c.(235-237)CCA>CGA	p.P79R	CCDC82_uc009ywq.2_Missense_Mutation_p.P79R|CCDC82_uc001pfx.3_Missense_Mutation_p.P79R|CCDC82_uc009ywr.2_Missense_Mutation_p.P79R|CCDC82_uc009yws.2_Missense_Mutation_p.P79R	NM_024725	NP_079001	Q8N4S0	CCD82_HUMAN	coiled-coil domain containing 82	79							protein binding			ovary(1)	1		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)		BRCA - Breast invasive adenocarcinoma(274;0.154)		TTCACTTCCTGGTGTTTTATT	0.348													7	128					0	0	8.12818e-05	0	0
CNTN5	53942	broad.mit.edu	37	11	99827608	99827608	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:99827608C>T	uc001pga.2	+	8	1083	c.744C>T	c.(742-744)TCC>TCT	p.S248S	CNTN5_uc009ywv.1_Silent_p.S248S|CNTN5_uc001pfz.2_Silent_p.S248S|CNTN5_uc001pgb.2_Silent_p.S174S	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	248	Ig-like C2-type 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		GGTTCATCTCCCAGGAGACAG	0.418													9	85					0	0	0.000274275	0	0
TRPC6	7225	broad.mit.edu	37	11	101344405	101344405	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:101344405G>C	uc001pgk.3	-	7	2269	c.1844C>G	c.(1843-1845)CCA>CGA	p.P615R	TRPC6_uc009ywy.2_Missense_Mutation_p.P499R|TRPC6_uc009ywz.1_Missense_Mutation_p.P560R	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	615	Cytoplasmic (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		TTCATTTGCTGGTAAAATATA	0.383													4	93					0	0	0.000602214	0	0
MMP27	64066	broad.mit.edu	37	11	102573542	102573542	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:102573542C>G	uc001phd.1	-	4	584	c.561G>C	c.(559-561)CCG>CCC	p.P187P		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	187					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		CACCCAGACCCGGACCAGGAG	0.443													6	110					0	0	3.59834e-05	0	0
MMP8	4317	broad.mit.edu	37	11	102593239	102593239	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:102593239G>T	uc001phe.2	-	2	367	c.268C>A	c.(268-270)CGC>AGC	p.R90S	MMP8_uc010rut.1_Missense_Mutation_p.R25S|MMP8_uc010ruu.1_Missense_Mutation_p.R67S	NM_002424	NP_002415	P22894	MMP8_HUMAN	matrix metalloproteinase 8 preproprotein	90	Cysteine switch (By similarity).				collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4	all_cancers(8;0.00092)|all_epithelial(12;0.00389)|Lung NSC(15;0.227)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0555)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.189)	BRCA - Breast invasive adenocarcinoma(274;0.0141)		ACTCCACAGCGAGGCTTTTTC	0.453													5	83					0.000157383	0.00173811	0.000157383	1	0
MMP3	4314	broad.mit.edu	37	11	102710972	102710972	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:102710972C>A	uc001phj.1	-	6	867	c.802G>T	c.(802-804)GAC>TAC	p.D268Y		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	268					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	TCAGGGGAGTCAGGGGGAGGT	0.507													5	36					8.12818e-05	0.000938396	8.12818e-05	1	0
MMP12	4321	broad.mit.edu	37	11	102733867	102733867	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:102733867G>T	uc001phk.2	-	11	1422	c.1377C>A	c.(1375-1377)ACC>ACA	p.T459T		NM_002426	NP_002417	P39900	MMP12_HUMAN	matrix metalloproteinase 12 preproprotein	459	Hemopexin-like 4.				positive regulation of epithelial cell proliferation involved in wound healing|proteolysis|wound healing, spreading of epidermal cells	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.014)	Acetohydroxamic Acid(DB00551)	TCAGTGTTTTGGTGATACGTT	0.299													8	155					2.80697e-09	3.71907e-08	0.000978159	1	0
DYNC2H1	79659	broad.mit.edu	37	11	102988372	102988372	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:102988372G>C	uc001pho.2	+	6	923	c.779G>C	c.(778-780)GGA>GCA	p.G260A	DYNC2H1_uc001phn.1_Missense_Mutation_p.G260A|DYNC2H1_uc009yxe.1_Missense_Mutation_p.G260A	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	260	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		GGTTCATTTGGAAGGTTTGTT	0.279													8	78					0	0	0.000157383	0	0
CUL5	8065	broad.mit.edu	37	11	107966389	107966389	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:107966389C>G	uc001pjv.2	+	16	2543	c.1876C>G	c.(1876-1878)CCT>GCT	p.P626A	CUL5_uc001pju.2_RNA	NM_003478	NP_003469	Q93034	CUL5_HUMAN	Vasopressin-activated calcium-mobilizing	626					cell cycle arrest|cell proliferation|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process|viral reproduction	cullin-RING ubiquitin ligase complex|cytosol	calcium channel activity|receptor activity|ubiquitin protein ligase binding			ovary(1)	1		all_cancers(61;7.09e-10)|all_epithelial(67;2.97e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|Melanoma(852;4.48e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;3.58e-05)|Epithelial(105;4.68e-05)|all cancers(92;0.00122)|OV - Ovarian serous cystadenocarcinoma(223;0.217)		AACTGAACTCCCTGATGCTGA	0.388													6	144					0	0	0.000442599	0	0
ATM	472	broad.mit.edu	37	11	108115601	108115601	+	Missense_Mutation	SNP	G	C	C	rs56123940		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:108115601G>C	uc001pkb.1	+	7	1134	c.749G>C	c.(748-750)CGA>CCA	p.R250P	ATM_uc009yxr.1_Missense_Mutation_p.R250P	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	250			R -> Q.		cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		TTTCGAATTCGAGTGTGTGAA	0.338			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			4	151					0	0	0.00024832	0	0
KDELC2	143888	broad.mit.edu	37	11	108352018	108352018	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:108352018G>T	uc001pkj.2	-	5	1053	c.987C>A	c.(985-987)TCC>TCA	p.S329S	KDELC2_uc001pki.2_Silent_p.S273S	NM_153705	NP_714916	Q7Z4H8	KDEL2_HUMAN	KDEL (Lys-Asp-Glu-Leu) containing 2 precursor	329						endoplasmic reticulum lumen				ovary(1)	1		all_cancers(61;1.38e-11)|all_epithelial(67;3.16e-07)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;6.93e-06)|BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|all cancers(92;0.00016)|OV - Ovarian serous cystadenocarcinoma(223;0.132)|Colorectal(284;0.14)		GATTTTCTTTGGACAGCTGTA	0.438													13	157					0.000151284	0.00173001	0.000151284	1	0
EXPH5	23086	broad.mit.edu	37	11	108381919	108381919	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:108381919G>T	uc001pkk.2	-	6	4426	c.4315C>A	c.(4315-4317)CAA>AAA	p.Q1439K	EXPH5_uc010rvy.1_Missense_Mutation_p.Q1251K|EXPH5_uc010rvz.1_Missense_Mutation_p.Q1283K|EXPH5_uc010rwa.1_Missense_Mutation_p.Q1363K	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1439					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		CTTCTAGTTTGGGAATTTCCA	0.413													6	110					5.18039e-06	6.44204e-05	0.000157383	1	0
DDX10	1662	broad.mit.edu	37	11	108564282	108564282	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:108564282C>G	uc001pkm.2	+	9	1243	c.1178C>G	c.(1177-1179)CCT>CGT	p.P393R	DDX10_uc001pkl.1_Missense_Mutation_p.P393R	NM_004398	NP_004389	Q13206	DDX10_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	393	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity			breast(2)|lung(1)|prostate(1)	4		all_cancers(61;1.29e-11)|all_epithelial(67;2.96e-07)|Melanoma(852;1.54e-05)|Acute lymphoblastic leukemia(157;4.24e-05)|all_hematologic(158;0.000141)|Breast(348;0.026)|all_neural(223;0.0729)		BRCA - Breast invasive adenocarcinoma(274;2.48e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.000609)|OV - Ovarian serous cystadenocarcinoma(223;0.133)		TTTGATTGTCCTGAGGATGCC	0.418			T	NUP98	AML*								4	201					0	0	0.000157383	0	0
ARHGAP20	57569	broad.mit.edu	37	11	110477412	110477412	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:110477412C>G	uc001pkz.1	-	10	1122	c.837G>C	c.(835-837)CCG>CCC	p.P279P	ARHGAP20_uc001pky.1_Silent_p.P256P|ARHGAP20_uc009yyb.1_Silent_p.P243P|ARHGAP20_uc001pla.1_Silent_p.P243P	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	279	Ras-associating.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		CCTTTGATCCCGGTGTCAGGA	0.502													4	168					0	0	3.59834e-05	0	0
LAYN	143903	broad.mit.edu	37	11	111428347	111428347	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:111428347G>T	uc001plr.1	+	7	1100	c.764G>T	c.(763-765)TGG>TTG	p.W255L	LAYN_uc001plp.1_Missense_Mutation_p.W247L|LAYN_uc001plq.1_Missense_Mutation_p.W255L|LAYN_uc001pls.1_Missense_Mutation_p.W247L|LAYN_uc010rwg.1_Missense_Mutation_p.W102L|LAYN_uc010rwh.1_Missense_Mutation_p.W103L	NM_178834	NP_849156	Q6UX15	LAYN_HUMAN	layilin	255	Helical; (Potential).					cell surface|integral to membrane|ruffle	hyaluronic acid binding|sugar binding				0		all_cancers(61;9.06e-10)|all_epithelial(67;1.34e-05)|Melanoma(852;1.74e-05)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Breast(348;0.086)		Epithelial(105;1.5e-06)|BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|all cancers(92;2.45e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0476)		GTTGTATGTTGGGTTTGGATC	0.423													8	334					0.000978159	0.00917326	0.000978159	1	0
PPP2R1B	5519	broad.mit.edu	37	11	111636045	111636045	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:111636045G>C	uc001plx.1	-	2	262	c.178C>G	c.(178-180)CGA>GGA	p.R60G	PPP2R1B_uc001plw.1_Missense_Mutation_p.R60G|PPP2R1B_uc010rwi.1_Intron|PPP2R1B_uc010rwj.1_5'UTR|PPP2R1B_uc010rwk.1_Missense_Mutation_p.R60G|PPP2R1B_uc010rwl.1_Missense_Mutation_p.R60G	NM_002716	NP_002707	P30154	2AAB_HUMAN	beta isoform of regulatory subunit A, protein	60	HEAT 2.						protein binding				0		all_cancers(61;2.34e-15)|all_epithelial(67;1.72e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|Epithelial(105;2.36e-06)|all cancers(92;3.78e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0761)		AATTCACTTCGGGTCCTTTCT	0.368													6	207					0	0	0.000978159	0	0
ZW10	9183	broad.mit.edu	37	11	113610022	113610022	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:113610022C>G	uc001poe.2	-	12	1703	c.1666G>C	c.(1666-1668)GGG>CGG	p.G556R	ZW10_uc009yyv.2_RNA	NM_004724	NP_004715	O43264	ZW10_HUMAN	centromere/kinetochore protein zw10	556					cell division|ER to Golgi vesicle-mediated transport|establishment of mitotic spindle orientation|meiosis|mitotic cell cycle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|protein complex assembly|protein localization to kinetochore|protein transport|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|endoplasmic reticulum membrane|kinetochore microtubule|nucleus|spindle pole	centromeric DNA binding|protein binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.84e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000237)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.94e-06)|Epithelial(105;0.000103)|all cancers(92;0.000786)		AACTGATGCCCGAGGGTCAGC	0.488													4	83					0	0	3.59834e-05	0	0
HTR3B	9177	broad.mit.edu	37	11	113802502	113802502	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:113802502C>T	uc001pok.2	+	4	348	c.281C>T	c.(280-282)TCC>TTC	p.S94F	HTR3B_uc001pol.2_Missense_Mutation_p.S83F	NM_006028	NP_006019	O95264	5HT3B_HUMAN	5-hydroxytryptamine (serotonin) receptor 3B	94	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|postsynaptic membrane	serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;6.81e-18)|all_epithelial(67;6.67e-11)|all_hematologic(158;4.67e-05)|Melanoma(852;0.000316)|Acute lymphoblastic leukemia(157;0.000976)|Breast(348;0.0101)|Prostate(24;0.0154)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.04e-06)|Epithelial(105;1.98e-05)|all cancers(92;0.000201)|OV - Ovarian serous cystadenocarcinoma(223;0.151)		GAATTTTTATCCTGGAACTCC	0.413													15	74					0	0	0.000566183	0	0
FAM55D	54827	broad.mit.edu	37	11	114453572	114453572	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:114453572G>C	uc001ppc.2	-	3	449	c.268C>G	c.(268-270)CAC>GAC	p.H90D	FAM55D_uc001ppd.2_5'UTR	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	90						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		GTGTTCACGTGGGTGAAAGGT	0.502													7	102					0	0	8.12818e-05	0	0
ZNF259	8882	broad.mit.edu	37	11	116652937	116652937	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:116652937C>A	uc001ppp.2	-	12	1149	c.1116G>T	c.(1114-1116)CTG>CTT	p.L372L	ZNF259_uc009yzd.2_Intron|ZNF259_uc001ppq.2_Silent_p.L302L	NM_003904	NP_003895	O75312	ZPR1_HUMAN	zinc finger protein 259	372					cell proliferation|signal transduction	cytoplasm|nucleolus					0	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.61e-06)|all cancers(92;0.000139)|OV - Ovarian serous cystadenocarcinoma(223;0.153)		AACTGTCGCCCAGTGTGAAAG	0.458													10	385					0.000308642	0.00326428	0.000308642	1	0
APOA5	116519	broad.mit.edu	37	11	116661710	116661710	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:116661710C>A	uc001ppr.2	-	3	243	c.235G>T	c.(235-237)GGG>TGG	p.G79W	ZNF259_uc001ppp.2_5'Flank|ZNF259_uc009yzd.2_5'Flank|ZNF259_uc001ppq.2_5'Flank|APOA5_uc009yze.2_Missense_Mutation_p.G79W|APOA5_uc009yzf.2_Missense_Mutation_p.G79W|APOA5_uc009yzg.2_Missense_Mutation_p.G105W	NM_052968	NP_443200	Q6Q788	APOA5_HUMAN	apolipoprotein AV precursor	79	Potential.				acylglycerol homeostasis|cholesterol homeostasis|lipid transport|lipoprotein metabolic process|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor-mediated endocytosis|positive regulation of triglyceride catabolic process|positive regulation of very-low-density lipoprotein particle remodeling|tissue regeneration|triglyceride catabolic process|triglyceride homeostasis	chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	enzyme binding|heparin binding|lipoprotein lipase activator activity|low-density lipoprotein particle receptor binding|phosphatidylcholine binding				0	all_hematologic(175;0.0487)	all_cancers(61;3.31e-09)|all_epithelial(67;8.03e-06)|Breast(348;0.0126)|Melanoma(852;0.0153)|Acute lymphoblastic leukemia(157;0.0257)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0433)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;4.93e-06)|all cancers(92;0.000123)|OV - Ovarian serous cystadenocarcinoma(223;0.149)		GCCTCGCTCCCACTCAGAGGC	0.607													8	269					0.000978159	0.00917326	0.000978159	1	0
SIK3	23387	broad.mit.edu	37	11	116732036	116732036	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:116732036G>C	uc001ppy.2	-	18	2097	c.2061C>G	c.(2059-2061)CCC>CCG	p.P687P	SIK3_uc001ppz.2_Silent_p.P586P|SIK3_uc001pqa.2_Silent_p.P687P|SIK3_uc001ppw.2_Silent_p.P104P|SIK3_uc001ppx.2_Intron|SIK3_uc001pqb.2_5'UTR	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	687	Gln-rich.					cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						GACTATTACTGGGCTGCCTGA	0.478											OREG0003492	type=REGULATORY REGION|Gene=BC035583|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	6	355					0	0	0.000673444	0	0
SIK3	23387	broad.mit.edu	37	11	116798079	116798079	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:116798079C>G	uc001ppy.2	-	4	334	c.298G>C	c.(298-300)GGT>CGT	p.G100R	SIK3_uc001ppz.2_5'UTR|SIK3_uc001pqa.2_Missense_Mutation_p.G100R	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	100	Protein kinase.					cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						GCCATTCTACCATGGGCCACC	0.433													5	290					0	0	0.000442599	0	0
SIDT2	51092	broad.mit.edu	37	11	117062620	117062620	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:117062620G>C	uc001pqh.1	+	19	1803	c.1762G>C	c.(1762-1764)GGA>CGA	p.G588R	SIDT2_uc010rxe.1_Missense_Mutation_p.G588R|SIDT2_uc001pqg.2_Missense_Mutation_p.G609R|SIDT2_uc001pqi.1_Missense_Mutation_p.G585R|SIDT2_uc001pqj.1_5'Flank	NM_001040455	NP_001035545	Q8NBJ9	SIDT2_HUMAN	SID1 transmembrane family, member 2 precursor	588	Extracellular (Potential).					integral to membrane|lysosomal membrane					0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.69e-05)|Epithelial(105;0.000219)|all cancers(92;0.00144)		CATGATCGCCGGACTCTGCAT	0.572													5	138					0	0	8.12818e-05	0	0
CEP164	22897	broad.mit.edu	37	11	117267847	117267847	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:117267847G>C	uc001prc.2	+	27	3466	c.3319G>C	c.(3319-3321)GGG>CGG	p.G1107R	CEP164_uc001prb.2_Missense_Mutation_p.G1110R|CEP164_uc001prf.2_Intron|CEP164_uc009yzp.1_RNA|CEP164_uc001prg.1_Missense_Mutation_p.G540R	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	1107					cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		CTCTGCTGAGGGGGTAGCCCT	0.587													4	54					0	0	3.59834e-05	0	0
CEP164	22897	broad.mit.edu	37	11	117280347	117280347	+	Silent	SNP	G	T	T	rs142802684		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:117280347G>T	uc001prc.2	+	30	3909	c.3762G>T	c.(3760-3762)CCG>CCT	p.P1254P	CEP164_uc001prb.2_Silent_p.P1249P|CEP164_uc001prf.2_Intron|CEP164_uc009yzp.1_RNA|CEP164_uc001prg.1_Silent_p.P679P	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	1254					cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		ACTCAACCCCGAGTCTCACCT	0.592													6	146					9.70103e-10	1.29088e-08	0.000673444	1	0
HINFP	25988	broad.mit.edu	37	11	119001505	119001505	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:119001505C>T	uc001pvp.2	+	4	441	c.252C>T	c.(250-252)CGC>CGT	p.R84R	HINFP_uc010rzb.1_Silent_p.R84R|HINFP_uc001pvq.2_Silent_p.R84R|HINFP_uc001pvr.2_5'Flank	NM_015517	NP_056332	Q9BQA5	HINFP_HUMAN	MBD2 (methyl-CpG-binding protein)-interacting	84					DNA damage checkpoint|DNA repair|establishment of protein localization|in utero embryonic development|myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription involved in G1/S phase of mitotic cell cycle	Cajal body	enzyme binding|histone binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						ACCTCATCCGCCATGTCTACT	0.527													15	148					0	0	0.00074312	0	0
ARHGEF12	23365	broad.mit.edu	37	11	120310837	120310837	+	Splice_Site	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:120310837G>C	uc001pxl.1	+	13	1007	c.1000_splice	c.e13-1	p.D334_splice	ARHGEF12_uc009zat.2_Splice_Site_p.D315_splice|ARHGEF12_uc010rzn.1_Splice_Site_p.D231_splice|ARHGEF12_uc009zau.1_Splice_Site_p.D231_splice	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12						apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		AATGTTGCCAGGACACTCAAT	0.393			T	MLL	AML								4	90					0	0	0.000602214	0	0
UBASH3B	84959	broad.mit.edu	37	11	122650322	122650322	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:122650322G>T	uc001pyi.3	+	4	880	c.520G>T	c.(520-522)GGC>TGC	p.G174C		NM_032873	NP_116262	Q8TF42	UBS3B_HUMAN	ubiquitin associated and SH3 domain containing,	174						cytoplasm|nucleus	protein tyrosine phosphatase activity			central_nervous_system(1)	1		Breast(109;0.00254)|Medulloblastoma(222;0.00877)|Lung NSC(97;0.0183)|all_lung(97;0.0186)|all_neural(223;0.0381)|all_hematologic(192;0.104)		BRCA - Breast invasive adenocarcinoma(274;1.37e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0463)		CAACTTCATCGGCCTCTTTGT	0.572													5	144					0.000157383	0.00173811	0.000157383	1	0
ASAM	79827	broad.mit.edu	37	11	122955376	122955376	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:122955376C>T	uc001pyt.2	-	3	591	c.232G>A	c.(232-234)GAA>AAA	p.E78K		NM_024769	NP_079045	Q9H6B4	CLMP_HUMAN	adipocyte-specific adhesion molecule precursor	78	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane|tight junction					0		Breast(109;0.0025)|Lung NSC(97;0.0179)|all_lung(97;0.0182)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.73e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0446)		CCCTTCTGTTCCTCAGTCAAG	0.532													14	68					0	0	0.000219431	0	0
SCN3B	55800	broad.mit.edu	37	11	123524456	123524456	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:123524456C>A	uc001pza.1	-	2	461	c.54G>T	c.(52-54)TGG>TGT	p.W18C	SCN3B_uc001pzb.1_Missense_Mutation_p.W18C	NM_001040151	NP_001035241	Q9NY72	SCN3B_HUMAN	voltage-gated sodium channel beta-3 subunit	18					axon guidance	integral to membrane|plasma membrane	voltage-gated sodium channel activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0227)		GGTACTTACCCCAGTAGATAA	0.502													10	194					5.01169e-05	0.000591401	0.000566183	1	0
TBRG1	84897	broad.mit.edu	37	11	124501992	124501992	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:124501992C>T	uc001qak.3	+	9	1332	c.1094C>T	c.(1093-1095)TCC>TTC	p.S365F	TBRG1_uc001qaj.3_Missense_Mutation_p.S214F|TBRG1_uc001qal.3_Missense_Mutation_p.S141F|TBRG1_uc001qam.3_RNA|TBRG1_uc009zbf.2_RNA|TBRG1_uc009zbg.2_Silent_p.I166I|TBRG1_uc009zbh.2_Missense_Mutation_p.S141F	NM_032811	NP_116200	Q3YBR2	TBRG1_HUMAN	transforming growth factor beta regulator 1	365					cell cycle arrest|DNA replication|negative regulation of cell proliferation|nucleolus to nucleoplasm transport|protein stabilization	nucleus	DNA binding|protein binding				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0218)		TCTCCAGGATCCTTGGACCTC	0.483													28	110					0	0	0.00106085	0	0
SPA17	53340	broad.mit.edu	37	11	124564263	124564263	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:124564263G>C	uc001qap.2	+	5	513	c.377G>C	c.(376-378)CGG>CCG	p.R126P		NM_017425	NP_059121	Q15506	SP17_HUMAN	sperm autoantigenic protein 17	126	IQ.				binding of sperm to zona pellucida|ciliary or flagellar motility|signal transduction|spermatogenesis	cytoplasm|flagellum|membrane|motile cilium|primary cilium	cAMP-dependent protein kinase regulator activity				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0223)		GCTGCCTTCCGGGGACACATA	0.413													4	175					0	0	3.59834e-05	0	0
CCDC15	80071	broad.mit.edu	37	11	124857952	124857952	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:124857952C>G	uc001qbm.3	+	8	2089	c.1830C>G	c.(1828-1830)CCC>CCG	p.P610P		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	610						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		ATTTTCTACCCAGAGACCTGC	0.418													4	163					0	0	0.00024832	0	0
SLC37A2	219855	broad.mit.edu	37	11	124953734	124953734	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:124953734G>C	uc001qbn.2	+	11	1251	c.1000G>C	c.(1000-1002)GGG>CGG	p.G334R	SLC37A2_uc010sau.1_Missense_Mutation_p.G334R|SLC37A2_uc010sav.1_5'UTR|SLC37A2_uc001qbp.2_5'UTR	NM_001145290	NP_001138762	Q8TED4	SPX2_HUMAN	solute carrier family 37 (glycerol-3-phosphate	334	Helical; (Potential).				carbohydrate transport|transmembrane transport	integral to membrane				ovary(2)	2	all_hematologic(175;0.215)	Breast(109;0.012)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.152)|all_lung(97;0.159)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.61e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0384)		CAAGGAGGCTGGGGACCTGTC	0.562													4	67					0	0	0.00024832	0	0
FAM118B	79607	broad.mit.edu	37	11	126110771	126110771	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:126110771C>G	uc001qdf.2	+	4	354	c.171C>G	c.(169-171)CCC>CCG	p.P57P	FAM118B_uc009zca.2_Silent_p.P61P|FAM118B_uc001qdg.2_Silent_p.P57P	NM_024556	NP_078832	Q9BPY3	F118B_HUMAN	hypothetical protein LOC79607	57											0	all_hematologic(175;0.145)	Breast(109;0.00156)|Lung NSC(97;0.00948)|all_lung(97;0.0101)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.15e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0784)		CAGTTGCGCCCCAAGTTCCAG	0.438													5	265					0	0	8.12818e-05	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128851800	128851800	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:128851800G>C	uc009zcp.2	-	15	1516	c.1516C>G	c.(1516-1518)CTT>GTT	p.L506V	ARHGAP32_uc009zcq.1_Missense_Mutation_p.L466V|ARHGAP32_uc009zco.2_5'UTR|ARHGAP32_uc001qez.2_Missense_Mutation_p.L157V	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	506	Rho-GAP.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						TCAGCTAGAAGAGACAAGTGT	0.348													3	75					0	0	3.59834e-05	0	0
BARX2	8538	broad.mit.edu	37	11	129246079	129246079	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:129246079C>A	uc001qfc.3	+	1	199	c.149C>A	c.(148-150)TCG>TAG	p.S50*		NM_003658	NP_003649	Q9UMQ3	BARX2_HUMAN	BarH-like homeobox 2	50											0	all_hematologic(175;0.0749)	Lung NSC(97;0.000383)|all_lung(97;0.000824)|Breast(109;0.000962)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.00929)|Lung(977;0.0245)|LUSC - Lung squamous cell carcinoma(976;0.0253)		GTGTGCCCGTCGCTGGTCGTG	0.577											OREG0021508	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	164					0.000274275	0.00290969	0.000274275	1	0
APLP2	334	broad.mit.edu	37	11	129999969	129999969	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:129999969C>G	uc010sby.1	+	11	1649	c.1492C>G	c.(1492-1494)CGT>GGT	p.R498G	APLP2_uc001qfp.2_Missense_Mutation_p.R498G|APLP2_uc001qfq.2_Missense_Mutation_p.R442G|APLP2_uc010sbz.1_Missense_Mutation_p.R286G|APLP2_uc001qfr.2_Missense_Mutation_p.R264G|APLP2_uc001qfs.2_Missense_Mutation_p.R269G|APLP2_uc001qfv.2_Missense_Mutation_p.R389G	NM_001642	NP_001633	Q06481	APLP2_HUMAN	amyloid beta (A4) precursor-like protein 2	498	Extracellular (Potential).				G-protein coupled receptor protein signaling pathway	integral to membrane|nucleus|plasma membrane	DNA binding|identical protein binding|serine-type endopeptidase inhibitor activity			ovary(3)	3	all_hematologic(175;0.0429)	Breast(109;0.00586)|Lung NSC(97;0.00785)|all_lung(97;0.0154)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0197)|Lung(977;0.24)		GCGTTATGTCCGTGCTGAGAA	0.463													4	137					0	0	0.00024832	0	0
ST14	6768	broad.mit.edu	37	11	130068214	130068214	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:130068214G>C	uc001qfw.2	+	13	1664	c.1471G>C	c.(1471-1473)GGC>CGC	p.G491R		NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	491	Extracellular (Potential).|LDL-receptor class A 2.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	TTGCGACGCCGGCCACCAGTT	0.627													4	121					0	0	3.59834e-05	0	0
ZBTB44	29068	broad.mit.edu	37	11	130131641	130131641	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:130131641C>G	uc001qga.2	-	2	522	c.128G>C	c.(127-129)CGG>CCG	p.R43P	ZBTB44_uc001qgb.3_Missense_Mutation_p.R43P|ZBTB44_uc001qfx.2_RNA|ZBTB44_uc001qgc.1_Missense_Mutation_p.R43P|ZBTB44_uc001qfz.2_Missense_Mutation_p.R43P	NM_014155	NP_054874	Q8NCP5	ZBT44_HUMAN	zinc finger and BTB domain containing 44	43	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0192)|Lung(977;0.235)		CTTATGTGCCCGGAAGATTTT	0.448													4	140					0	0	0.000157383	0	0
NCAPD3	23310	broad.mit.edu	37	11	134073791	134073791	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:134073791C>G	uc001qhd.1	-	11	1832	c.1226G>C	c.(1225-1227)CGG>CCG	p.R409P	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	409					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		AGTAAAAACCCGGTGTGGGAT	0.423													4	123					0	0	3.59834e-05	0	0
GLB1L2	89944	broad.mit.edu	37	11	134241376	134241376	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:134241376C>G	uc001qhp.2	+	14	1606	c.1418C>G	c.(1417-1419)CCC>CGC	p.P473R	GLB1L2_uc009zdg.1_RNA	NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	473					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		ATTGCTGTCCCCCTGATCCAG	0.537													4	123					0	0	0.00024832	0	0
KDM5A	5927	broad.mit.edu	37	12	472157	472157	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:472157G>C	uc001qif.1	-	5	1007	c.644C>G	c.(643-645)CCG>CGG	p.P215R	KDM5A_uc001qie.1_Missense_Mutation_p.P215R|KDM5A_uc010sdn.1_Missense_Mutation_p.P174R|KDM5A_uc010sdo.1_Intron	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	215					chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						TGTTCTCTTCGGCAGAATGTT	0.338			T 	NUP98	AML								4	185					0	0	0.00024832	0	0
NINJ2	4815	broad.mit.edu	37	12	772558	772558	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:772558G>C	uc001qil.2	-	1	198	c.107C>G	c.(106-108)CCG>CGG	p.P36R	NINJ2_uc010sds.1_Missense_Mutation_p.P36R	NM_016533	NP_057617	Q9NZG7	NINJ2_HUMAN	ninjurin 2	Error:Variant_position_missing_in_Q9NZG7_after_alignment					nervous system development|neuron cell-cell adhesion|tissue regeneration	integral to plasma membrane				ovary(2)	2	all_cancers(10;0.0101)|all_epithelial(11;0.0174)|Ovarian(42;0.0512)|all_lung(10;0.103)|Lung NSC(10;0.185)		OV - Ovarian serous cystadenocarcinoma(31;3.26e-05)|BRCA - Breast invasive adenocarcinoma(9;0.0508)			CACACGCACCGGGTGCCGGGA	0.597													5	161					0	0	0.000157383	0	0
HSN2	378465	broad.mit.edu	37	12	978124	978124	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:978124G>T	uc001qiq.2	+	1	1255	c.1129G>T	c.(1129-1131)GGC>TGC	p.G377C	WNK1_uc001qio.3_Intron|WNK1_uc001qip.3_Intron|WNK1_uc001qir.3_Intron	NM_213655	NP_998820			hereditary sensory neuropathy, type II												0	all_cancers(10;0.0107)|all_epithelial(11;0.0151)|Ovarian(42;0.0512)|all_lung(10;0.0521)|Lung NSC(10;0.0987)		OV - Ovarian serous cystadenocarcinoma(31;0.000967)|BRCA - Breast invasive adenocarcinoma(9;0.0178)			TGCACCTTTTGGCTCTGACGT	0.498													10	270					1.05317e-09	1.40074e-08	0.000219431	1	0
WNK1	65125	broad.mit.edu	37	12	989977	989977	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:989977G>T	uc001qio.3	+	12	3430	c.2923G>T	c.(2923-2925)GTC>TTC	p.V975F	WNK1_uc001qip.3_Intron|WNK1_uc001qir.3_Intron	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	975					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CCATTCTACAGTCCTATCCCC	0.507													6	281					0.000978159	0.00917326	0.000978159	1	0
RAD52	5893	broad.mit.edu	37	12	1036405	1036405	+	Missense_Mutation	SNP	C	A	A	rs77010242		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:1036405C>A	uc001qis.1	-	6	487	c.373G>T	c.(373-375)GGT>TGT	p.G125C	RAD52_uc001qit.1_RNA|RAD52_uc010sdt.1_Missense_Mutation_p.G48C|RAD52_uc001qiu.1_Missense_Mutation_p.G125C|RAD52_uc001qiv.1_RNA|RAD52_uc001qiw.1_Intron|RAD52_uc010sdu.1_Missense_Mutation_p.G125C|RAD52_uc001qix.1_Missense_Mutation_p.G125C	NM_134424	NP_602296	P43351	RAD52_HUMAN	RAD52 homolog	125					DNA recombinase assembly|mitotic recombination|reciprocal meiotic recombination	nucleoplasm	DNA binding|protein binding			central_nervous_system(1)	1	all_cancers(10;0.0119)|all_epithelial(11;0.0171)|all_lung(10;0.0521)|Ovarian(42;0.0816)|Lung NSC(10;0.0987)		OV - Ovarian serous cystadenocarcinoma(31;0.00123)|BRCA - Breast invasive adenocarcinoma(9;0.0323)			ACACCATAACCAACATCTTCA	0.542								Homologous_recombination					10	226					2.31682e-05	0.000280436	0.000308642	1	0
WNT5B	81029	broad.mit.edu	37	12	1742018	1742018	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:1742018G>A	uc009zdq.2	+	3	517	c.275G>A	c.(274-276)TGG>TAG	p.W92*	WNT5B_uc001qjj.2_Nonsense_Mutation_p.W92*|WNT5B_uc001qjk.2_Nonsense_Mutation_p.W92*|WNT5B_uc001qjl.2_Nonsense_Mutation_p.W92*	NM_032642	NP_116031	Q9H1J7	WNT5B_HUMAN	wingless-type MMTV integration site family,	92					angiogenesis|anterior/posterior pattern formation|cell migration involved in gastrulation|cellular response to retinoic acid|chondrocyte differentiation|convergent extension involved in axis elongation|convergent extension involved in gastrulation|dorsal/ventral axis specification|endocrine pancreas development|fat cell differentiation|lens fiber cell development|negative regulation of canonical Wnt receptor signaling pathway|neuron differentiation|positive regulation of cell migration|positive regulation of fat cell differentiation|respiratory system development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled-2 binding			skin(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00109)			CAGCGGCGGTGGAATTGCAGC	0.562													6	137					0	0	0.000442599	0	0
FKBP4	2288	broad.mit.edu	37	12	2906442	2906442	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:2906442G>C	uc001qkz.2	+	2	442	c.244G>C	c.(244-246)GGA>CGA	p.G82R		NM_002014	NP_002005	Q02790	FKBP4_HUMAN	FK506 binding protein 52	82	PPIase FKBP-type 1.				negative regulation of microtubule polymerization or depolymerization|negative regulation of neuron projection development|protein folding	axonal growth cone|cytosol|membrane|microtubule|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity|protein binding, bridging				0			OV - Ovarian serous cystadenocarcinoma(31;0.00105)		Dimethyl sulfoxide(DB01093)	CTTTGACCTGGGAAAAGGTAG	0.512													6	178					0	0	0.000442599	0	0
ITFG2	55846	broad.mit.edu	37	12	2933352	2933352	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:2933352C>G	uc001qlb.1	+	12	1401	c.1337C>G	c.(1336-1338)CCC>CGC	p.P446R	ITFG2_uc010seb.1_Missense_Mutation_p.P269R|ITFG2_uc010sec.1_RNA	NM_018463	NP_060933	Q969R8	ITFG2_HUMAN	integrin alpha FG-GAP repeat containing 2	446											0			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			CTCCAGGATCCCACCTAGCTG	0.547													4	78					0	0	3.59834e-05	0	0
C12orf32	83695	broad.mit.edu	37	12	2994699	2994700	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:2994699_2994700GG>TT	uc001qlh.2	+	2	335_336	c.167_168GG>TT	c.(166-168)TGG>TTT	p.W56F	TULP3_uc010sef.1_Intron|C12orf32_uc010see.1_Intron|C12orf32_uc001qli.2_Intron	NR_027363				RecName: Full=Uncharacterized protein C12orf32;												0			OV - Ovarian serous cystadenocarcinoma(31;0.000622)			ATCACTTCCTGGGTAGGCCCAT	0.351													6	87					0	0	6.4e-05	0	0
VWF	7450	broad.mit.edu	37	12	6090951	6090952	+	Splice_Site	DNP	CC	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:6090951_6090952CC>TT	uc001qnn.1	-	42	7537	c.7287_splice	c.e42+1	p.K2429_splice	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein						blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GCAGTCCTTACCTTGTCGGGAA	0.381													9	82					0	0	6.4e-05	0	0
VAMP1	6843	broad.mit.edu	37	12	6574092	6574093	+	Nonsense_Mutation	DNP	CC	AG	AG			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:6574092_6574093CC>AG	uc001qok.2	-	4	449_450	c.303_304GG>CT	c.(301-306)CTGGGA>CTCTGA	p.G102*	TAPBPL_uc001qoi.1_Intron|VAMP1_uc001qoj.2_Nonsense_Mutation_p.G102*|VAMP1_uc001qol.2_Nonsense_Mutation_p.G102*	NM_014231	NP_055046	P23763	VAMP1_HUMAN	vesicle-associated membrane protein 1 isoform 1	102	Helical; Anchor for type IV membrane protein; (Potential).				neurotransmitter secretion|vesicle-mediated transport	cell junction|endocytic vesicle membrane|integral to plasma membrane|mitochondrial outer membrane|synaptic vesicle membrane|synaptosome	protein binding				0					Botulinum Toxin Type B(DB00042)	CAGATGGCTCCCAGCATGATCA	0.455													7	183					0	0	6.4e-05	0	0
NOP2	4839	broad.mit.edu	37	12	6666414	6666414	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:6666414C>G	uc001qph.1	-	16	2352	c.2172G>C	c.(2170-2172)CCG>CCC	p.P724P	IFFO1_uc001qpe.1_5'Flank|IFFO1_uc010sfe.1_5'Flank|IFFO1_uc001qpf.1_5'Flank|IFFO1_uc001qpc.1_5'Flank|IFFO1_uc001qpd.1_5'Flank|NOP2_uc009zeq.1_3'UTR|NOP2_uc001qpi.1_Silent_p.P724P|NOP2_uc001qpj.1_Silent_p.P153P	NM_001033714	NP_001028886	P46087	NOP2_HUMAN	nucleolar protein 1, 120kDa	728					positive regulation of cell proliferation|rRNA processing	nucleolus	protein binding|RNA binding|S-adenosylmethionine-dependent methyltransferase activity			ovary(2)	2						ATAACACAGCCGGTGTTTGTG	0.537													5	245					0	0	0.000157383	0	0
CHD4	1108	broad.mit.edu	37	12	6710657	6710657	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:6710657G>T	uc001qpo.2	-	6	761	c.597C>A	c.(595-597)TCC>TCA	p.S199S	CHD4_uc001qpn.2_Silent_p.S192S|CHD4_uc001qpp.2_Silent_p.S196S	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	199					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TCATCATCTTGGAGACAGCAA	0.478													10	366					1.52009e-12	2.03543e-11	0.000308642	1	0
LAG3	3902	broad.mit.edu	37	12	6884443	6884443	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:6884443G>T	uc001qqt.3	+	5	1135	c.786G>T	c.(784-786)CTG>CTT	p.L262L	LAG3_uc001qqs.2_Silent_p.L262L|LAG3_uc001qqu.2_Silent_p.L92L	NM_002286	NP_002277	P18627	LAG3_HUMAN	lymphocyte-activation protein 3 precursor	262	Extracellular (Potential).					integral to membrane	antigen binding|MHC class II protein binding				0						CTTCAGGTCTGGAGCCCCCAA	0.597													7	146					1.58986e-06	2.00859e-05	0.000673444	1	0
CLSTN3	9746	broad.mit.edu	37	12	7289700	7289700	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:7289700C>G	uc001qsr.2	+	7	1482	c.1204C>G	c.(1204-1206)CAG>GAG	p.Q402E	CLSTN3_uc001qss.2_Missense_Mutation_p.Q414E	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	402	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						TAACACTGTCCAGAATGGTGA	0.328													4	50					0	0	3.59834e-05	0	0
NECAP1	25977	broad.mit.edu	37	12	8242812	8242812	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:8242812C>G	uc001qtx.2	+	3	296	c.218C>G	c.(217-219)CCA>CGA	p.P73R	NECAP1_uc001qty.2_5'UTR	NM_015509	NP_056324	Q8NC96	NECP1_HUMAN	NECAP endocytosis associated 1	73					endocytosis|protein transport	clathrin coated vesicle membrane|plasma membrane				ovary(1)	1				Kidney(36;0.0915)		GCTCAGGCACCAGTAGAACAA	0.438													4	148					0	0	3.59834e-05	0	0
A2ML1	144568	broad.mit.edu	37	12	9004591	9004591	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:9004591C>G	uc001quz.3	+	19	2544	c.2446C>G	c.(2446-2448)CTA>GTA	p.L816V	A2ML1_uc001qva.1_Missense_Mutation_p.L396V|A2ML1_uc010sgm.1_Missense_Mutation_p.L316V	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	660						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						CTTCAATTACCTAAAGGATTG	0.483													4	161					0	0	0.000602214	0	0
A2ML1	144568	broad.mit.edu	37	12	9013834	9013834	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:9013834G>C	uc001quz.3	+	28	3541	c.3443G>C	c.(3442-3444)GGG>GCG	p.G1148A	A2ML1_uc001qva.1_Missense_Mutation_p.G728A|A2ML1_uc010sgm.1_Missense_Mutation_p.G648A	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	992						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						TCCCTGGCTGGGGAAATGGAC	0.468													4	200					0	0	0.000157383	0	0
KLRC3	3823	broad.mit.edu	37	12	10588543	10588543	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:10588543G>T	uc001qyh.2	-	1	50	c.43C>A	c.(43-45)CAG>AAG	p.Q15K	KLRC2_uc010she.1_Missense_Mutation_p.Q15K|KLRC2_uc001qyk.2_Missense_Mutation_p.Q15K	NM_002261	NP_002252	Q07444	NKG2E_HUMAN	killer cell lectin-like receptor subfamily C,	15	Cytoplasmic (Potential).				cellular defense response	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|skin(1)	3						TTTGGGTCCTGGGCCAGACTC	0.428													9	237					0.00010058	0.00115734	0.00010058	1	0
LRP6	4040	broad.mit.edu	37	12	12291307	12291307	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:12291307G>T	uc001rah.3	-	16	3701	c.3559C>A	c.(3559-3561)CAG>AAG	p.Q1187K	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.Q1187K	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	1187	Extracellular (Potential).|LDL-receptor class B 20.|Beta-propeller 4.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				TCACTAAGCTGGGCAATTCGA	0.378													10	353					1.3612e-06	1.73233e-05	0.000308642	1	0
LRP6	4040	broad.mit.edu	37	12	12318043	12318044	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:12318043_12318044GG>TT	uc001rah.3	-	8	1873_1874	c.1731_1732CC>AA	c.(1729-1734)GGCCTA>GGAATA	p.L578I	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.L578I	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	578	Extracellular (Potential).|LDL-receptor class B 10.|Beta-propeller 2.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				GTAGCCTTTAGGCCCATGAGGT	0.441													11	414					0	0	6.4e-05	0	0
LRP6	4040	broad.mit.edu	37	12	12332861	12332861	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:12332861C>A	uc001rah.3	-	7	1570	c.1428G>T	c.(1426-1428)CTG>CTT	p.L476L	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Silent_p.L476L	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	476	Beta-propeller 2.|Extracellular (Potential).|LDL-receptor class B 8.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				CAGAACCATCCAGAGCTGCTC	0.393													10	310					7.48243e-07	9.56199e-06	0.000442599	1	0
KIAA1467	57613	broad.mit.edu	37	12	13208834	13208834	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:13208834C>G	uc001rbi.2	+	2	410	c.387C>G	c.(385-387)CCC>CCG	p.P129P	KIAA1467_uc009zhx.1_RNA	NM_020853	NP_065904	A2RU67	K1467_HUMAN	hypothetical protein LOC57613	129						integral to membrane				central_nervous_system(2)|skin(1)	3		Prostate(47;0.184)		BRCA - Breast invasive adenocarcinoma(232;0.157)		CCTGTCCTCCCAGAGATCTGC	0.557													3	49					0	0	6.4e-05	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716160	13716160	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:13716160G>T	uc001rbt.2	-	13	4191	c.4012C>A	c.(4012-4014)CAC>AAC	p.H1338N		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1338	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TCAAACATGTGGGCGTAGGGG	0.612													7	82					0.000274275	0.00290969	0.000274275	1	0
WBP11	51729	broad.mit.edu	37	12	14952596	14952596	+	Silent	SNP	G	T	T	rs75889856		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:14952596G>T	uc001rci.2	-	4	324	c.163C>A	c.(163-165)CGA>AGA	p.R55R		NM_016312	NP_057396	Q9Y2W2	WBP11_HUMAN	WW domain binding protein 11	55					mRNA processing|RNA splicing|rRNA processing	cytoplasm	single-stranded DNA binding|WW domain binding			ovary(1)|lung(1)	2						TCCATGTCTCGGATTATCTGT	0.413													8	39					2.17888e-05	0.000264662	0.000442599	1	0
EPS8	2059	broad.mit.edu	37	12	15811501	15811501	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:15811501C>G	uc009zif.2	-	11	1050	c.956G>C	c.(955-957)CGG>CCG	p.R319P	EPS8_uc001rdb.2_Missense_Mutation_p.R319P|EPS8_uc009zig.2_Missense_Mutation_p.R59P|EPS8_uc010shv.1_Missense_Mutation_p.R59P	NM_004447	NP_004438	Q12929	EPS8_HUMAN	epidermal growth factor receptor pathway	319					cell proliferation|epidermal growth factor receptor signaling pathway		SH3/SH2 adaptor activity			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		all_epithelial(100;1.87e-05)|Breast(259;0.000286)|Hepatocellular(102;0.244)		BRCA - Breast invasive adenocarcinoma(232;4.29e-05)|GBM - Glioblastoma multiforme(207;0.0264)		AGGTTTTGCCCGCAGCGTTAA	0.348													6	146					0	0	0.000442599	0	0
LMO3	55885	broad.mit.edu	37	12	16704168	16704168	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:16704168G>C	uc001rdk.1	-	4	866	c.426C>G	c.(424-426)CCC>CCG	p.P142P	LMO3_uc001rdj.1_Silent_p.P153P|LMO3_uc010shy.1_Silent_p.P160P|LMO3_uc001rdl.1_Silent_p.P142P|LMO3_uc009zii.1_RNA|LMO3_uc010shz.1_Silent_p.P164P|LMO3_uc001rdm.1_Silent_p.P142P|LMO3_uc001rdo.1_RNA|LMO3_uc001rdp.1_RNA|LMO3_uc001rdn.1_Silent_p.P142P|LMO3_uc009zij.1_RNA|LMO3_uc009zik.1_RNA	NM_018640	NP_061110	Q8TAP4	LMO3_HUMAN	LIM domain only 3	142					regulation of transcription, DNA-dependent|transcription, DNA-dependent		zinc ion binding				0		Hepatocellular(102;0.244)				AGCGAACCTGGGGTGCATAAC	0.373													4	93					0	0	3.59834e-05	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18491419	18491419	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:18491419G>T	uc001rdt.2	+	9	1448	c.1332G>T	c.(1330-1332)GTG>GTT	p.V444V	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Silent_p.V444V|PIK3C2G_uc010sic.1_Silent_p.V222V	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	444					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TAGGGTGTGTGGAAACCAAAC	0.299													8	135					0.000274275	0.00290969	0.000274275	1	0
SLCO1C1	53919	broad.mit.edu	37	12	20870065	20870065	+	Splice_Site	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:20870065G>T	uc001rej.3	+	8	1032	c.677_splice	c.e8-1	p.G226_splice	SLCO1C1_uc010sii.1_Splice_Site_p.G226_splice|SLCO1C1_uc010sij.1_Splice_Site_p.G177_splice|SLCO1C1_uc009zip.2_Splice_Site_p.G60_splice|SLCO1C1_uc001rei.2_Splice_Site_p.G226_splice|SLCO1C1_uc010sik.1_Splice_Site_p.G108_splice	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,						sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					TCTTGGTGCAGGGTGTGTGCA	0.353													8	96					0.000157383	0.00173811	0.000157383	1	0
SLCO1B3	28234	broad.mit.edu	37	12	21032535	21032535	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:21032535C>T	uc001rek.2	+	10	1427	c.1301C>T	c.(1300-1302)TCA>TTA	p.S434L	SLCO1B3_uc001rel.2_Missense_Mutation_p.S434L|SLCO1B3_uc010sil.1_Missense_Mutation_p.S434L|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.S259L	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	434	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					GAAAGCAAATCAGTTGCCGGC	0.313													13	130					0	0	0.000219431	0	0
ABCC9	10060	broad.mit.edu	37	12	21962879	21962879	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:21962879C>T	uc001rfi.1	-	35	4242	c.4222G>A	c.(4222-4224)GAT>AAT	p.D1408N	ABCC9_uc001rfh.2_Missense_Mutation_p.D1408N|ABCC9_uc001rfj.1_Missense_Mutation_p.D1372N|ABCC9_uc001rfg.2_5'Flank	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1408	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CACTCTGGATCTAAATTAAAT	0.279													11	70					0	0	0.000673444	0	0
ABCC9	10060	broad.mit.edu	37	12	21965074	21965074	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:21965074C>G	uc001rfi.1	-	34	4140	c.4120G>C	c.(4120-4122)GGG>CGG	p.G1374R	ABCC9_uc001rfh.2_Missense_Mutation_p.G1374R|ABCC9_uc001rfj.1_Missense_Mutation_p.G1338R	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1374	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	ATGTCTATCCCATCAATGACA	0.328													4	63					0	0	3.59834e-05	0	0
ABCC9	10060	broad.mit.edu	37	12	21970158	21970158	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:21970158G>C	uc001rfi.1	-	31	3875	c.3855C>G	c.(3853-3855)TTC>TTG	p.F1285L	ABCC9_uc001rfh.2_Missense_Mutation_p.F1285L|ABCC9_uc001rfj.1_Missense_Mutation_p.F1249L	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1285	Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CCATAGTCAGGAAACTGTTCA	0.373													5	162					0	0	0.000602214	0	0
ABCC9	10060	broad.mit.edu	37	12	22059062	22059062	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:22059062G>C	uc001rfi.1	-	10	1636	c.1616C>G	c.(1615-1617)TCC>TGC	p.S539C	ABCC9_uc001rfh.2_Missense_Mutation_p.S539C|ABCC9_uc001rfj.1_Missense_Mutation_p.S539C	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	539	Helical; Name=10; (Potential).|ABC transmembrane type-1 1.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CAACTTACTGGAGAGTGATGT	0.373													4	64					0	0	3.59834e-05	0	0
ETNK1	55500	broad.mit.edu	37	12	22814072	22814072	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:22814072G>C	uc001rft.2	+	4	922	c.900G>C	c.(898-900)CTG>CTC	p.L300L	ETNK1_uc009ziz.2_Silent_p.L300L	NM_018638	NP_061108	Q9HBU6	EKI1_HUMAN	ethanolamine kinase 1 isoform A	300					phosphatidylethanolamine biosynthetic process	cytoplasm	ATP binding|ethanolamine kinase activity				0						TTTCCAACCTGGGCTCACCTG	0.373													7	99					0	0	8.12818e-05	0	0
LYRM5	144363	broad.mit.edu	37	12	25357147	25357147	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:25357147G>C	uc001rgo.2	+	3	337	c.168G>C	c.(166-168)CAG>CAC	p.Q56H	LYRM5_uc001rgn.2_Missense_Mutation_p.Q58H	NM_001001660	NP_001001660	Q6IPR1	LYRM5_HUMAN	LYR motif containing 5	56											0	all_cancers(2;4.75e-35)|all_epithelial(2;1.91e-37)|all_lung(3;1.07e-23)|Lung NSC(3;5.49e-23)|Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.0016)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;2.21e-21)|Epithelial(3;8.04e-19)|all cancers(3;2.26e-16)|STAD - Stomach adenocarcinoma(2;0.00138)			TTATTGCACAGGGCGAATTTG	0.333													4	141					0	0	0.00024832	0	0
STK38L	23012	broad.mit.edu	37	12	27462051	27462051	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:27462051G>C	uc001rhr.2	+	5	513	c.314G>C	c.(313-315)CGG>CCG	p.R105P	STK38L_uc001rhs.2_RNA|STK38L_uc010sjm.1_Missense_Mutation_p.R12P	NM_015000	NP_055815	Q9Y2H1	ST38L_HUMAN	serine/threonine kinase 38 like	105	Protein kinase.				intracellular protein kinase cascade|regulation of cellular component organization	actin cytoskeleton|cytoplasm	actin binding|ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|kidney(1)	5	Colorectal(261;0.0847)					TTTTAGGTGCGGTTGGTCCAG	0.343													4	155					0	0	3.59834e-05	0	0
KLHDC5	57542	broad.mit.edu	37	12	27950650	27950650	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:27950650C>G	uc001rij.2	+	3	1146	c.1069C>G	c.(1069-1071)CGG>GGG	p.R357G	KLHDC5_uc009zjj.2_RNA	NM_020782	NP_065833	Q9P2K6	KLDC5_HUMAN	kelch domain containing 5	357	Kelch 4.									ovary(1)|central_nervous_system(1)	2	Lung SC(9;0.0873)					TCTTTCAGACCGGAACATGAA	0.473													4	239					0	0	0.000157383	0	0
FAR2	55711	broad.mit.edu	37	12	29464850	29464850	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:29464850G>C	uc001ris.3	+	8	1069	c.922G>C	c.(922-924)GGT>CGT	p.G308R	FAR2_uc001rit.2_Missense_Mutation_p.G308R|FAR2_uc009zjm.2_Missense_Mutation_p.G211R|uc001riu.1_Intron	NM_018099	NP_060569	Q96K12	FACR2_HUMAN	fatty acyl CoA reductase 2	308					ether lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	binding|oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor				0						CATTACATCTGGTAACATGAA	0.323													4	42					0	0	0.000157383	0	0
OVCH1	341350	broad.mit.edu	37	12	29644125	29644125	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:29644125C>T	uc001rix.1	-	5	455	c.455G>A	c.(454-456)GGA>GAA	p.G152E		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	152	Peptidase S1 1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					AACAGCATTTCCTGAGAAAAC	0.388													8	68					0	0	0.000274275	0	0
TMTC1	83857	broad.mit.edu	37	12	29904600	29904600	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:29904600T>C	uc001rjb.2	-	5	1087	c.613A>G	c.(613-615)AGA>GGA	p.R205G	TMTC1_uc001rjc.1_Missense_Mutation_p.R205G	NM_175861	NP_787057	Q8IUR5	TMTC1_HUMAN	transmembrane and tetratricopeptide repeat	313						integral to membrane	binding				0	Lung NSC(12;7.61e-10)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.032)					gcccagtacctcatcatggac	0.368													3	55					0	0	6.4e-05	0	0
IPO8	10526	broad.mit.edu	37	12	30790069	30790069	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:30790069G>C	uc001rjd.2	-	22	2712	c.2542C>G	c.(2542-2544)CAA>GAA	p.Q848E	IPO8_uc001rje.1_Missense_Mutation_p.Q337E|IPO8_uc010sjt.1_Missense_Mutation_p.Q643E	NM_006390	NP_006381	O15397	IPO8_HUMAN	importin 8	848					intracellular protein transport|signal transduction	cytoplasm|nucleus	protein transporter activity|Ran GTPase binding			skin(2)|central_nervous_system(1)	3	all_lung(12;6.66e-10)|Lung NSC(12;4.84e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					GGTCGATTTTGCAATTCCAAA	0.403													4	99					0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	12	31311882	31311882	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:31311882C>A	uc010sjy.1	-	5	548	c.548G>T	c.(547-549)TGG>TTG	p.W183L						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		CACAACAATCCAGTAATCTCC	0.368													12	241					0.000219431	0.00241088	0.000219431	1	0
FAM60A	58516	broad.mit.edu	37	12	31448247	31448247	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:31448247C>G	uc010sjz.1	-	3	388	c.149G>C	c.(148-150)GGA>GCA	p.G50A	FAM60A_uc001rkd.2_Missense_Mutation_p.G50A|FAM60A_uc010ska.1_Missense_Mutation_p.G50A|FAM60A_uc001rke.2_Missense_Mutation_p.G50A|FAM60A_uc010skb.1_Intron|FAM60A_uc001rkc.2_Missense_Mutation_p.G75A	NM_021238	NP_067061	Q9NP50	FA60A_HUMAN	family with sequence similarity 60, member A	50											0	all_cancers(9;5.22e-13)|all_epithelial(9;4e-13)|all_lung(12;1.2e-11)|Lung NSC(12;2.17e-09)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0207)|Lung SC(12;0.0592)|Esophageal squamous(101;0.162)					GCAGATGTCTCCTGAACGAGT	0.378													5	96					0	0	0.000602214	0	0
BICD1	636	broad.mit.edu	37	12	32481205	32481205	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:32481205G>T	uc001rku.2	+	5	1897	c.1816G>T	c.(1816-1818)GCC>TCC	p.A606S	BICD1_uc001rkv.2_Missense_Mutation_p.A606S|BICD1_uc010skd.1_RNA	NM_001714	NP_001705	Q96G01	BICD1_HUMAN	bicaudal D homolog 1 isoform 1	606					anatomical structure morphogenesis|intracellular mRNA localization|microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule|positive regulation of receptor-mediated endocytosis|protein localization to organelle|RNA processing|stress granule assembly|viral reproduction	cytoplasmic vesicle|cytoskeleton|cytosol|host cell viral assembly compartment|membrane|perinuclear region of cytoplasm|trans-Golgi network	cytoskeletal adaptor activity|dynactin binding|dynein binding|proteinase activated receptor binding|Rab GTPase binding|structural constituent of cytoskeleton			large_intestine(1)|central_nervous_system(1)	2	all_cancers(9;5.13e-11)|all_epithelial(9;2.71e-11)|all_lung(12;6.66e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0213)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0201)			TGTTATTACTGCCCCACCGTC	0.453													6	200					0.000442599	0.00445669	0.000442599	1	0
DNM1L	10059	broad.mit.edu	37	12	32886698	32886698	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:32886698C>G	uc001rld.2	+	13	1657	c.1496C>G	c.(1495-1497)CCA>CGA	p.P499R	DNM1L_uc001rle.2_Missense_Mutation_p.P499R|DNM1L_uc001rlf.2_Missense_Mutation_p.P499R|DNM1L_uc010skh.1_Missense_Mutation_p.P565R|DNM1L_uc001rlg.2_Missense_Mutation_p.P565R|DNM1L_uc001rlh.2_Missense_Mutation_p.P552R|DNM1L_uc010ski.1_Missense_Mutation_p.P296R	NM_012062	NP_036192	O00429	DNM1L_HUMAN	dynamin 1-like isoform 1	499	Interaction with GSK3B.				cellular component disassembly involved in apoptosis|mitochondrial fragmentation involved in apoptosis|mitochondrial membrane organization|positive regulation of mitochondrial fission	cis-Golgi network|cytosol|endomembrane system|endoplasmic reticulum|mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2	Lung NSC(5;2.15e-06)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					ACAAAACATCCAGACTTTGCT	0.313													5	398					0	0	8.12818e-05	0	0
PKP2	5318	broad.mit.edu	37	12	32949100	32949100	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:32949100C>T	uc001rlj.3	-	12	2547	c.2432G>A	c.(2431-2433)CGC>CAC	p.R811H	PKP2_uc001rlk.3_Missense_Mutation_p.R767H|PKP2_uc010skj.1_Missense_Mutation_p.R764H	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	811	ARM 8.				cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TAGAAGGTCGCGTGCATTCTG	0.493													15	90					0	0	0.000566183	0	0
C12orf40	283461	broad.mit.edu	37	12	40076498	40076498	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:40076498G>A	uc001rmc.2	+	8	939	c.772G>A	c.(772-774)GAC>AAC	p.D258N	C12orf40_uc009zjv.1_RNA	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	258										ovary(6)	6						AAGACAGTCAGACTACATTAC	0.353													14	80					0	0	0.000422831	0	0
LRRK2	120892	broad.mit.edu	37	12	40697809	40697809	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:40697809G>T	uc001rmg.3	+	27	3771	c.3650G>T	c.(3649-3651)TGG>TTG	p.W1217L	LRRK2_uc001rmh.1_Missense_Mutation_p.W839L|LRRK2_uc009zjw.2_Missense_Mutation_p.W55L|LRRK2_uc001rmi.2_Missense_Mutation_p.W50L	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1217	LRR 9.				activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				CCCGCACACTGGAAATCTTTG	0.373													6	73					0.000157383	0.00173811	0.000157383	1	0
CNTN1	1272	broad.mit.edu	37	12	41312446	41312446	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:41312446G>C	uc001rmm.1	+	4	213	c.100G>C	c.(100-102)GAG>CAG	p.E34Q	CNTN1_uc009zjy.1_Missense_Mutation_p.E34Q|CNTN1_uc001rmn.1_Missense_Mutation_p.E23Q|CNTN1_uc001rmo.2_Missense_Mutation_p.E34Q	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	34					axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				TGTAGTTTCTGAGGAAGACAA	0.323													4	83					0	0	3.59834e-05	0	0
CNTN1	1272	broad.mit.edu	37	12	41419054	41419054	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:41419054C>G	uc001rmm.1	+	21	2739	c.2626C>G	c.(2626-2628)CAG>GAG	p.Q876E	CNTN1_uc001rmn.1_Missense_Mutation_p.Q865E	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	876	Fibronectin type-III 3.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				GCCAGACACCCAGTATTTTAT	0.507													4	190					0	0	3.59834e-05	0	0
ANO6	196527	broad.mit.edu	37	12	45784232	45784232	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:45784232G>T	uc001roo.2	+	12	1672	c.1337G>T	c.(1336-1338)TGG>TTG	p.W446L	ANO6_uc010sld.1_Missense_Mutation_p.W446L|ANO6_uc010sle.1_Missense_Mutation_p.W446L|ANO6_uc010slf.1_Missense_Mutation_p.W467L|ANO6_uc010slg.1_Missense_Mutation_p.W428L	NM_001025356	NP_001020527	Q4KMQ2	ANO6_HUMAN	anoctamin 6 isoform a	446	Cytoplasmic (Potential).				activation of blood coagulation via clotting cascade|phosphatidylserine exposure on blood platelet	chloride channel complex|plasma membrane	chloride channel activity			ovary(1)|kidney(1)	2						TTTACTGCCTGGGGAAAATGT	0.328													8	252					0.000442599	0.00445669	0.000442599	1	0
RAPGEF3	10411	broad.mit.edu	37	12	48145283	48145283	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:48145283T>C	uc009zkp.2	-	4	715	c.275A>G	c.(274-276)GAG>GGG	p.E92G	RAPGEF3_uc009zkq.2_Missense_Mutation_p.E92G|RAPGEF3_uc001rpz.3_Missense_Mutation_p.E134G|RAPGEF3_uc009zkr.2_Intron|RAPGEF3_uc009zks.2_Missense_Mutation_p.E146G|RAPGEF3_uc001rqb.3_Missense_Mutation_p.E134G	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	92					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		ATCCACCAGCTCCCGGCCAGA	0.602													3	46					0	0	0.000602214	0	0
LMBR1L	55716	broad.mit.edu	37	12	49500748	49500748	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:49500748G>T	uc001rth.3	-	2	495	c.153C>A	c.(151-153)ACC>ACA	p.T51T	LMBR1L_uc001rtg.3_5'UTR|LMBR1L_uc001rti.3_Silent_p.T51T|LMBR1L_uc001rtj.1_5'Flank|LMBR1L_uc009zld.1_5'UTR|LMBR1L_uc010smf.1_RNA|LMBR1L_uc009zle.1_3'UTR	NM_018113	NP_060583	Q6UX01	LMBRL_HUMAN	lipocalin-interacting membrane receptor	51	LCN1-binding.|Cytoplasmic (Potential).				endocytosis	integral to membrane|plasma membrane	receptor activity			pancreas(1)	1						AAGTACCTGTGGTGAACTCAG	0.522													7	139					3.09899e-07	4.00456e-06	0.000274275	1	0
SPATS2	65244	broad.mit.edu	37	12	49916587	49916587	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:49916587C>A	uc001rud.2	+	12	2051	c.1062C>A	c.(1060-1062)TTC>TTA	p.F354L	SPATS2_uc001rue.2_RNA|SPATS2_uc009zli.1_Missense_Mutation_p.F354L|SPATS2_uc001ruf.2_Missense_Mutation_p.F354L|SPATS2_uc001rug.2_Missense_Mutation_p.F354L	NM_023071	NP_075559	Q86XZ4	SPAS2_HUMAN	spermatogenesis associated, serine-rich 2	354						cytoplasm				breast(1)	1						TAGCCCGGTTCACCTGTGATG	0.453													6	77					0.000274275	0.00290969	0.000274275	1	0
LIMA1	51474	broad.mit.edu	37	12	50615931	50615931	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:50615931G>A	uc001rwj.3	-	4	677	c.503C>T	c.(502-504)TCC>TTC	p.S168F	LIMA1_uc001rwh.3_Missense_Mutation_p.S8F|LIMA1_uc001rwi.3_Missense_Mutation_p.S8F|LIMA1_uc001rwk.3_Missense_Mutation_p.S168F|LIMA1_uc010smr.1_RNA|LIMA1_uc010sms.1_RNA	NM_016357	NP_057441	Q9UHB6	LIMA1_HUMAN	LIM domain and actin binding 1 isoform b	168					actin filament bundle assembly|negative regulation of actin filament depolymerization|ruffle organization	cytoplasm|focal adhesion|stress fiber	actin filament binding|actin monomer binding|zinc ion binding			ovary(1)	1						TTCATGCCTGGATTCTCCTAG	0.403													10	166					0	0	0.000978159	0	0
NR4A1	3164	broad.mit.edu	37	12	52448449	52448449	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:52448449C>T	uc001rzs.2	+	3	651	c.337C>T	c.(337-339)CCC>TCC	p.P113S	NR4A1_uc010sno.1_Missense_Mutation_p.P126S|NR4A1_uc001rzr.2_Missense_Mutation_p.P113S|NR4A1_uc009zmb.1_Missense_Mutation_p.P113S|NR4A1_uc001rzt.2_Missense_Mutation_p.P113S|NR4A1_uc009zmc.2_5'Flank	NM_002135	NP_002126	P22736	NR4A1_HUMAN	nuclear receptor subfamily 4, group A, member 1	113					nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		steroid hormone receptor activity|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(357;0.0967)		CGGCTGCTACCCCGGCCCCCT	0.448													6	85					0	0	3.59834e-05	0	0
KRT82	3888	broad.mit.edu	37	12	52799708	52799708	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:52799708C>G	uc001sai.1	-	1	469	c.354G>C	c.(352-354)AGG>AGC	p.R118S		NM_033033	NP_149022	Q9NSB4	KRT82_HUMAN	keratin 82	118	Head.					keratin filament	protein binding|structural constituent of epidermis			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.193)		CCTTCTCATCCCTCTTTACCC	0.577													4	154					0	0	0.000157383	0	0
KRT5	3852	broad.mit.edu	37	12	52911948	52911948	+	Splice_Site	SNP	C	G	G	rs112753883		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:52911948C>G	uc001san.2	-	3	934	c.771_splice	c.e3-1	p.K257_splice	KRT5_uc009zmh.2_Splice_Site_p.K257_splice	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5						epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		ATCCTCATACCTGGTGGTGAA	0.488													4	169					0	0	0.00024832	0	0
KRT2	3849	broad.mit.edu	37	12	53044242	53044242	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:53044242G>T	uc001sat.2	-	2	714	c.681C>A	c.(679-681)CCC>CCA	p.P227P		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	227	Linker 1.|Rod.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		CCTGGAAGATGGGCTCCAGGT	0.507													10	133					0.000673444	0.00655963	0.000673444	1	0
KRT1	3848	broad.mit.edu	37	12	53072376	53072376	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:53072376C>A	uc001sau.1	-	2	815	c.756G>T	c.(754-756)TTG>TTT	p.L252F	KRT1_uc001sav.1_Missense_Mutation_p.L252F	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	252	Coil 1B.|Rod.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						GTTCCGAATCCAACCGAGATT	0.453													7	164					3.86212e-05	0.000457303	0.000673444	1	0
SP1	6667	broad.mit.edu	37	12	53803278	53803278	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:53803278C>G	uc001scw.2	+	5	2074	c.1977C>G	c.(1975-1977)ACC>ACG	p.T659T	SP1_uc010sog.1_Silent_p.T652T	NM_138473	NP_612482	P08047	SP1_HUMAN	Sp1 transcription factor isoform a	659	VZV IE62-binding.|C2H2-type 2.				positive regulation by host of viral transcription|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	double-stranded DNA binding|histone deacetylase binding|HMG box domain binding|protein C-terminus binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(357;0.00527)		TTATGTGTACCTGGTCATACT	0.507													4	93					0	0	3.59834e-05	0	0
OR6C6	283365	broad.mit.edu	37	12	55688833	55688833	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:55688833G>A	uc010sph.1	-	1	184	c.184C>T	c.(184-186)CGT>TGT	p.R62C		NM_001005493	NP_001005493	A6NF89	OR6C6_HUMAN	olfactory receptor, family 6, subfamily C,	62	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|skin(1)	2						GAGAAATTACGGAGAAAGAAA	0.388													4	32					0	0	0.00024832	0	0
OR6C3	254786	broad.mit.edu	37	12	55725634	55725634	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:55725634C>G	uc010spj.1	+	1	150	c.150C>G	c.(148-150)TCC>TCG	p.S50S		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	50	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTGTGGACTCCCATCTGCAGA	0.388													4	188					0	0	0.000157383	0	0
PA2G4	5036	broad.mit.edu	37	12	56503697	56503697	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:56503697C>G	uc001sjm.2	+	7	1026	c.607C>G	c.(607-609)CAG>GAG	p.Q203E	PA2G4_uc009zol.2_Missense_Mutation_p.Q203E|PA2G4_uc009zom.2_Missense_Mutation_p.Q203E	NM_006191	NP_006182	Q9UQ80	PA2G4_HUMAN	ErbB3-binding protein 1	203					cell cycle arrest|cell proliferation|negative regulation of transcription, DNA-dependent|regulation of translation|rRNA processing	cytoplasm|nucleolus|ribonucleoprotein complex	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|ubiquitin protein ligase binding				0			OV - Ovarian serous cystadenocarcinoma(18;0.0739)			AACCATTATCCAGAATCCCAC	0.433													5	80					0	0	8.12818e-05	0	0
STAT2	6773	broad.mit.edu	37	12	56748282	56748282	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:56748282G>C	uc001slc.2	-	8	828	c.750C>G	c.(748-750)CCC>CCG	p.P250P	STAT2_uc001sld.2_Silent_p.P246P|STAT2_uc010sqn.1_Silent_p.P246P	NM_005419	NP_005410	P52630	STAT2_HUMAN	signal transducer and activator of transcription	250					interspecies interaction between organisms|JAK-STAT cascade|regulation of transcription from RNA polymerase II promoter|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	cytosol|nucleoplasm|plasma membrane	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|lung(1)|kidney(1)	3						CGTGGTCAATGGGAGCTCTGA	0.552													4	108					0	0	3.59834e-05	0	0
MIP	4284	broad.mit.edu	37	12	56845094	56845094	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:56845094T>C	uc001slh.2	-	4	794	c.762A>G	c.(760-762)GAA>GAG	p.E254E	TIMELESS_uc001slf.2_5'Flank|TIMELESS_uc001slg.2_5'Flank	NM_012064	NP_036196	P30301	MIP_HUMAN	major intrinsic protein of lens fiber	254	Cytoplasmic (By similarity).				response to stimulus|visual perception	gap junction|integral to plasma membrane	structural constituent of eye lens			skin(1)	1						GTTCAACAGGTTCCCCTGTGA	0.522													3	104					0	0	6.4e-05	0	0
RBMS2	5939	broad.mit.edu	37	12	56915841	56915841	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:56915841T>C	uc001sln.2	+	1	233	c.34T>C	c.(34-36)TCG>CCG	p.S12P	RBMS2_uc010sqp.1_5'UTR|RBMS2_uc010sqq.1_5'UTR|RBMS2_uc009zou.2_5'UTR	NM_002898	NP_002889	Q15434	RBMS2_HUMAN	RNA binding motif, single stranded interacting	12					RNA processing	nucleus	nucleotide binding|RNA binding				0						GCCCGGGATTTCGACTTTTGG	0.313													4	120					0	0	0.00024832	0	0
BAZ2A	11176	broad.mit.edu	37	12	56993617	56993617	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:56993617G>C	uc001slq.1	-	26	5241	c.5047C>G	c.(5047-5049)CGG>GGG	p.R1683G	BAZ2A_uc001slp.1_Missense_Mutation_p.R1681G|BAZ2A_uc001slo.1_Missense_Mutation_p.R489G|BAZ2A_uc009zov.1_Missense_Mutation_p.R649G|BAZ2A_uc009zow.1_Missense_Mutation_p.R1651G	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	1683	PHD-type.				chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						TCACCCTTCCGGCAGACTAGA	0.582													4	59					0	0	0.000602214	0	0
BAZ2A	11176	broad.mit.edu	37	12	57003918	57003918	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:57003918C>A	uc001slq.1	-	9	2061	c.1867G>T	c.(1867-1869)GAA>TAA	p.E623*	BAZ2A_uc001slp.1_Nonsense_Mutation_p.E621*|BAZ2A_uc009zow.1_Nonsense_Mutation_p.E591*	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	623					chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						TCTCTTTCTTCAAAGAAATCT	0.512													7	112					0.000274275	0.00290969	0.000274275	1	0
PRIM1	5557	broad.mit.edu	37	12	57127958	57127958	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:57127958G>C	uc001smd.2	-	12	1280	c.1216C>G	c.(1216-1218)CGA>GGA	p.R406G		NM_000946	NP_000937	P49642	PRI1_HUMAN	DNA primase polypeptide 1	406					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	DNA primase activity|metal ion binding				0						TCTCCTTTTCGGGATTTATCC	0.308													4	117					0	0	3.59834e-05	0	0
ZBTB39	9880	broad.mit.edu	37	12	57398515	57398515	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:57398515C>G	uc001sml.1	-	2	273	c.187G>C	c.(187-189)GGG>CGG	p.G63R	RDH16_uc010sqx.1_5'Flank	NM_014830	NP_055645	O15060	ZBT39_HUMAN	zinc finger and BTB domain containing 39	63	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						GCATCAAGCCCAGTATTCAGG	0.557													5	179					0	0	0.000274275	0	0
LRP1	4035	broad.mit.edu	37	12	57569780	57569780	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:57569780C>A	uc001snd.2	+	24	4348	c.3882C>A	c.(3880-3882)CCC>CCA	p.P1294P		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1294	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	TCCTGGTGCCCGGCCTGCGCA	0.602											OREG0021937	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	103					0.000157383	0.00173811	0.000157383	1	0
LRP1	4035	broad.mit.edu	37	12	57600428	57600428	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:57600428G>C	uc001snd.2	+	76	12229	c.11763G>C	c.(11761-11763)ACG>ACC	p.T3921T		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	3921	Extracellular (Potential).|LDL-receptor class B 31.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	ACTGGCACACGGGCACCATCT	0.607													3	64					0	0	3.59834e-05	0	0
PIP4K2C	79837	broad.mit.edu	37	12	57988939	57988940	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:57988939_57988940GG>TT	uc001sou.2	+	3	434_435	c.303_304GG>TT	c.(301-306)AAGGAG>AATTAG	p.101_102KE>N*	PIP4K2C_uc001sot.2_Nonsense_Mutation_p.101_102KE>N*|PIP4K2C_uc010srs.1_Splice_Site_p.E84_splice|PIP4K2C_uc010srt.1_Nonsense_Mutation_p.101_102KE>N*	NM_001146258	NP_001139730	Q8TBX8	PI42C_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	101_102	PIPK.					cytoplasm|membrane	1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding|identical protein binding			central_nervous_system(2)|lung(1)	3	Melanoma(17;0.122)					TCAAGTTCAAGGAGTATTGTCC	0.356													10	270					0	0	6.4e-05	0	0
PIP4K2C	79837	broad.mit.edu	37	12	57988951	57988951	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:57988951C>G	uc001sou.2	+	3	446	c.315C>G	c.(313-315)CCC>CCG	p.P105P	PIP4K2C_uc001sot.2_Silent_p.P105P|PIP4K2C_uc010srs.1_Silent_p.P87P|PIP4K2C_uc010srt.1_Silent_p.P105P	NM_001146258	NP_001139730	Q8TBX8	PI42C_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	105	PIPK.					cytoplasm|membrane	1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding|identical protein binding			central_nervous_system(2)|lung(1)	3	Melanoma(17;0.122)					AGTATTGTCCCCAGGTCTTCA	0.393													5	285					0	0	0.000673444	0	0
PIP4K2C	79837	broad.mit.edu	37	12	57993198	57993198	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:57993198C>G	uc001sou.2	+	6	807	c.676C>G	c.(676-678)CGG>GGG	p.R226G	PIP4K2C_uc001sot.2_Missense_Mutation_p.R226G|PIP4K2C_uc010srs.1_Missense_Mutation_p.R208G|PIP4K2C_uc010srt.1_Missense_Mutation_p.R178G	NM_001146258	NP_001139730	Q8TBX8	PI42C_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	226	PIPK.					cytoplasm|membrane	1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding|identical protein binding			central_nervous_system(2)|lung(1)	3	Melanoma(17;0.122)					CCTAGTGTCCCGGGAAGCCAG	0.498													4	78					0	0	0.000157383	0	0
AVIL	10677	broad.mit.edu	37	12	58201165	58201165	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:58201165C>A	uc001sqj.1	-	12	1469	c.1440G>T	c.(1438-1440)ACG>ACT	p.T480T	AVIL_uc009zqe.1_Silent_p.T473T|AVIL_uc001sqk.1_Silent_p.T58T|AVIL_uc001sql.3_Silent_p.T457T	NM_006576	NP_006567	O75366	AVIL_HUMAN	advillin	480	Core (By similarity).				actin filament capping|cilium morphogenesis|cytoskeleton organization|positive regulation of neuron projection development	actin cytoskeleton|axon|cytoplasm	actin binding			central_nervous_system(1)	1	Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					GGCGTGGCTCCGTTCCCATCC	0.532													6	130					0.000157383	0.00173811	0.000157383	1	0
XRCC6BP1	91419	broad.mit.edu	37	12	58350480	58350480	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:58350480G>T	uc001sqp.2	+	6	588	c.548G>T	c.(547-549)CGA>CTA	p.R183L		NM_033276	NP_150592	Q9Y6H3	ATP23_HUMAN	XRCC6 binding protein 1	183					double-strand break repair via nonhomologous end joining	DNA-dependent protein kinase-DNA ligase 4 complex	DNA-dependent protein kinase activity|metal ion binding|metalloendopeptidase activity			ovary(1)	1						ACTTGTGTGCGAGACAGAGCC	0.313													8	151					0.000274275	0.00290969	0.000274275	1	0
LRIG3	121227	broad.mit.edu	37	12	59274658	59274658	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:59274658C>G	uc001sqr.2	-	13	1752	c.1506G>C	c.(1504-1506)ACG>ACC	p.T502T	LRIG3_uc009zqh.2_Silent_p.T442T|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	502	Ig-like C2-type 1.					integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			CTGGCTGAACCGTGATCTGGG	0.423													4	169					0	0	3.59834e-05	0	0
DPY19L2	283417	broad.mit.edu	37	12	63974482	63974482	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:63974482C>T	uc001srp.1	-	19	2041	c.1860G>A	c.(1858-1860)CAG>CAA	p.Q620Q	DPY19L2_uc010sso.1_Silent_p.Q67Q	NM_173812	NP_776173	Q6NUT2	D19L2_HUMAN	dpy-19-like 2	620					multicellular organismal development|spermatid development	integral to membrane				central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;2.77e-05)	GBM - Glioblastoma multiforme(28;0.044)		AAAGTTCTTCCTGAGGCAAAT	0.338													10	89					0	0	0.000151284	0	0
TBK1	29110	broad.mit.edu	37	12	64879716	64879716	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:64879716G>C	uc001ssc.1	+	11	1321	c.1259G>C	c.(1258-1260)GGG>GCG	p.G420A		NM_013254	NP_037386	Q9UHD2	TBK1_HUMAN	TANK-binding kinase 1	420					I-kappaB kinase/NF-kappaB cascade|innate immune response|interspecies interaction between organisms|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of transcription from RNA polymerase II promoter|response to virus|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|large_intestine(1)|breast(1)	5				GBM - Glioblastoma multiforme(28;0.0386)		GCAATAACAGGGGTTGTGTGT	0.338													4	200					0	0	0.00024832	0	0
GNS	2799	broad.mit.edu	37	12	65139483	65139483	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:65139483C>G	uc001ssg.3	-	4	651	c.481G>C	c.(481-483)GGA>CGA	p.G161R	GNS_uc001ssf.2_Missense_Mutation_p.G105R|GNS_uc010ssq.1_Missense_Mutation_p.G193R|GNS_uc010ssr.1_Missense_Mutation_p.G141R	NM_002076	NP_002067	P15586	GNS_HUMAN	glucosamine (N-acetyl)-6-sulfatase precursor	161						lysosome	metal ion binding|N-acetylglucosamine-6-sulfatase activity|protein binding			central_nervous_system(1)	1	Lung NSC(1;7.25e-14)|all_lung(1;1.25e-12)		LUAD - Lung adenocarcinoma(6;0.115)	GBM - Glioblastoma multiforme(28;0.0435)		TGTTCTAGTCCACCTGCATCT	0.423													4	66					0	0	3.59834e-05	0	0
MDM2	4193	broad.mit.edu	37	12	69203017	69203017	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:69203017C>G	uc001sui.2	+	2	331	c.44C>G	c.(43-45)CCT>CGT	p.P15R	MDM2_uc009zri.2_Missense_Mutation_p.P15R|MDM2_uc009zqx.2_Missense_Mutation_p.P15R|MDM2_uc009zqw.2_Missense_Mutation_p.P15R|MDM2_uc001suk.2_Missense_Mutation_p.P15R|MDM2_uc009zqy.1_Missense_Mutation_p.P4R|MDM2_uc001sun.3_Missense_Mutation_p.P4R|MDM2_uc009zqz.2_Missense_Mutation_p.P9R|MDM2_uc009zra.2_Missense_Mutation_p.P9R|MDM2_uc009zrb.1_RNA|MDM2_uc001sum.1_Missense_Mutation_p.P4R|MDM2_uc009zrd.2_5'UTR|MDM2_uc009zrc.2_5'UTR|MDM2_uc009zre.2_Missense_Mutation_p.P4R|MDM2_uc009zrf.2_5'UTR|MDM2_uc001suo.2_Missense_Mutation_p.P4R|MDM2_uc009zrg.2_Missense_Mutation_p.P4R|MDM2_uc009zrh.2_Missense_Mutation_p.P4R	NM_002392	NP_002383	Q00987	MDM2_HUMAN	mouse double minute 2 homolog isoform MDM2	9	Necessary for interaction with USP2.				cellular response to hypoxia|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|establishment of protein localization|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell cycle arrest|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell proliferation|positive regulation of mitotic cell cycle|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein complex assembly|protein destabilization|protein localization to nucleus|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to antibiotic|synaptic transmission	cytosol|endocytic vesicle membrane|insoluble fraction|nucleolus|nucleoplasm|plasma membrane|protein complex	enzyme binding|identical protein binding|p53 binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)|central_nervous_system(1)	3	all_cancers(1;8.46e-121)|all_epithelial(5;3.21e-36)|Lung NSC(4;2.16e-33)|all_lung(4;3.03e-31)|Glioma(1;1.9e-09)|Breast(13;1.59e-06)|all_neural(1;1.03e-05)|Melanoma(1;0.0171)|Renal(347;0.0684)		all cancers(2;8.67e-65)|GBM - Glioblastoma multiforme(2;8.89e-62)|BRCA - Breast invasive adenocarcinoma(5;2.43e-08)|Lung(24;1.5e-05)|LUAD - Lung adenocarcinoma(15;8.5e-05)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			ATGTCTGTACCTACTGATGGT	0.353			A		sarcoma|glioma|colorectal|other								6	409					0	0	0.000274275	0	0
YEATS4	8089	broad.mit.edu	37	12	69756640	69756640	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:69756640G>C	uc001sux.2	+	2	345	c.124G>C	c.(124-126)GGG>CGG	p.G42R		NM_006530	NP_006521	O95619	YETS4_HUMAN	glioma-amplified sequence-41	42	YEATS.				histone H2A acetylation|histone H4 acetylation|mitosis|positive regulation of transcription, DNA-dependent|regulation of growth	NuA4 histone acetyltransferase complex|nuclear matrix	DNA binding|protein C-terminus binding|sequence-specific DNA binding transcription factor activity|structural constituent of cytoskeleton				0	all_epithelial(5;9.25e-35)|Breast(13;9.83e-07)|Esophageal squamous(21;0.187)		Epithelial(6;6.89e-18)|BRCA - Breast invasive adenocarcinoma(5;3.14e-09)|Lung(24;9.68e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|OV - Ovarian serous cystadenocarcinoma(12;0.00691)|STAD - Stomach adenocarcinoma(21;0.0151)|LUSC - Lung squamous cell carcinoma(43;0.24)|Kidney(9;0.241)			AGAAGAAGATGGGCACACTCA	0.318													5	180					0	0	0.000602214	0	0
YEATS4	8089	broad.mit.edu	37	12	69764527	69764527	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:69764527C>A	uc001sux.2	+	5	596	c.375C>A	c.(373-375)ACC>ACA	p.T125T		NM_006530	NP_006521	O95619	YETS4_HUMAN	glioma-amplified sequence-41	125	YEATS.				histone H2A acetylation|histone H4 acetylation|mitosis|positive regulation of transcription, DNA-dependent|regulation of growth	NuA4 histone acetyltransferase complex|nuclear matrix	DNA binding|protein C-terminus binding|sequence-specific DNA binding transcription factor activity|structural constituent of cytoskeleton				0	all_epithelial(5;9.25e-35)|Breast(13;9.83e-07)|Esophageal squamous(21;0.187)		Epithelial(6;6.89e-18)|BRCA - Breast invasive adenocarcinoma(5;3.14e-09)|Lung(24;9.68e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|OV - Ovarian serous cystadenocarcinoma(12;0.00691)|STAD - Stomach adenocarcinoma(21;0.0151)|LUSC - Lung squamous cell carcinoma(43;0.24)|Kidney(9;0.241)			AATCAGACACCAATGCAATGC	0.338													7	82					0.000673444	0.00655963	0.000673444	1	0
CCT2	10576	broad.mit.edu	37	12	69985849	69985849	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:69985849G>T	uc001svb.1	+	8	754	c.660G>T	c.(658-660)TTG>TTT	p.L220F	CCT2_uc009zrm.1_RNA|CCT2_uc009zrn.1_Missense_Mutation_p.L220F|CCT2_uc010stl.1_Missense_Mutation_p.L173F	NM_006431	NP_006422	P78371	TCPB_HUMAN	chaperonin containing TCP1, subunit 2	220					'de novo' posttranslational protein folding	nucleus	ATP binding|unfolded protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(2;7.7e-106)|Breast(13;2.15e-06)|Esophageal squamous(21;0.187)		Epithelial(6;2.72e-18)|GBM - Glioblastoma multiforme(2;2.58e-10)|Lung(24;0.000185)|OV - Ovarian serous cystadenocarcinoma(12;0.00126)|STAD - Stomach adenocarcinoma(21;0.00501)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			GCTTCCTGTTGGATAAAAAAA	0.284													9	225					7.93312e-07	1.01146e-05	0.000219431	1	0
RAB3IP	117177	broad.mit.edu	37	12	70188294	70188294	+	Silent	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:70188294A>G	uc001svp.2	+	5	1179	c.732A>G	c.(730-732)AAA>AAG	p.K244K	RAB3IP_uc001svl.1_Silent_p.K228K|RAB3IP_uc001svm.2_Silent_p.K228K|RAB3IP_uc001svn.2_Silent_p.K228K|RAB3IP_uc001svo.2_RNA|RAB3IP_uc001svq.2_Silent_p.K244K|RAB3IP_uc001svr.2_RNA|RAB3IP_uc001svs.2_RNA|RAB3IP_uc001svt.2_Silent_p.K22K	NM_175623	NP_783322	Q96QF0	RAB3I_HUMAN	RAB3A interacting protein isoform alpha 2	244	Potential.				cilium assembly|Golgi to plasma membrane transport|protein localization to organelle|protein transport	actin cortical patch|centrosome|cytosol|lamellipodium|microtubule basal body|nucleus	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1	Esophageal squamous(21;0.187)		Lung(24;0.000381)|OV - Ovarian serous cystadenocarcinoma(12;0.00168)|STAD - Stomach adenocarcinoma(21;0.00694)			CACAAGGAAAAGTGAGTTTTT	0.323													4	62					0	0	0.00024832	0	0
KCNMB4	27345	broad.mit.edu	37	12	70794062	70794062	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:70794062G>T	uc001svx.2	+	2	863	c.410G>T	c.(409-411)TGG>TTG	p.W137L		NM_014505	NP_055320	Q86W47	KCMB4_HUMAN	calcium-activated potassium channel beta 4	137	Extracellular (Potential).				detection of calcium ion|platelet activation|regulation of action potential in neuron|regulation of neurotransmitter secretion|regulation of vasoconstriction|synaptic transmission	voltage-gated potassium channel complex	calcium-activated potassium channel activity|protein binding				0	Renal(347;0.236)		Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00243)|STAD - Stomach adenocarcinoma(21;0.0118)			CAACAGTACTGGAAAGATGAG	0.348													8	145					2.17888e-05	0.000264662	0.000442599	1	0
LGR5	8549	broad.mit.edu	37	12	71947022	71947022	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:71947022C>G	uc001swl.2	+	5	646	c.598C>G	c.(598-600)CAC>GAC	p.H200D	LGR5_uc001swm.2_Missense_Mutation_p.H200D|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	200	Extracellular (Potential).|LRR 6.					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						CAAAATACACCACATACCAGA	0.433													5	264					0	0	0.000157383	0	0
LGR5	8549	broad.mit.edu	37	12	71950429	71950430	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:71950429_71950430GG>TT	uc001swl.2	+	6	723_724	c.675_676GG>TT	c.(673-678)CTGGGA>CTTTGA	p.G226*	LGR5_uc001swm.2_Nonsense_Mutation_p.G226*|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	226	LRR 7.|Extracellular (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TCCACTCCCTGGGAAAGAAATG	0.381													13	318					0	0	6.4e-05	0	0
LGR5	8549	broad.mit.edu	37	12	71953398	71953398	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:71953398C>G	uc001swl.2	+	7	797	c.749C>G	c.(748-750)CCC>CGC	p.P250R	LGR5_uc001swm.2_Missense_Mutation_p.P250R|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	250	Extracellular (Potential).|LRR 8.					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						GATGAATTCCCCACTGCAATT	0.269													6	333					0	0	0.000157383	0	0
LGR5	8549	broad.mit.edu	37	12	71960472	71960473	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:71960472_71960473GG>TT	uc001swl.2	+	10	1038_1039	c.990_991GG>TT	c.(988-993)CTGGAG>CTTTAG	p.E331*	LGR5_uc001swm.2_Nonsense_Mutation_p.E307*|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	331	Extracellular (Potential).|LRR 12.					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						CTGCAAACCTGGAGAGTCTGTA	0.391													8	246					0	0	6.4e-05	0	0
LGR5	8549	broad.mit.edu	37	12	71972624	71972624	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:71972624G>T	uc001swl.2	+	15	1369	c.1321G>T	c.(1321-1323)GGG>TGG	p.G441W	LGR5_uc001swm.2_Missense_Mutation_p.G417W|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	441	LRR 16.|Extracellular (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TCCTATAACTGGGTTACATGG	0.358													12	334					5.01169e-05	0.000591401	0.000566183	1	0
LGR5	8549	broad.mit.edu	37	12	71978082	71978082	+	Missense_Mutation	SNP	G	C	C	rs149859128		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:71978082G>C	uc001swl.2	+	18	2340	c.2292G>C	c.(2290-2292)ATG>ATC	p.M764I	LGR5_uc001swm.2_Missense_Mutation_p.M740I|LGR5_uc001swn.1_Intron	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	764	Cytoplasmic (Potential).					integral to plasma membrane	protein-hormone receptor activity	p.M764I(1)		lung(4)|skin(3)|ovary(1)|pancreas(1)	9						ACTGCTCTATGGTAAAACACA	0.443													6	402					0	0	3.59834e-05	0	0
TRHDE	29953	broad.mit.edu	37	12	72771817	72771817	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:72771817G>C	uc001sxa.2	+	3	1126	c.1096G>C	c.(1096-1098)GGG>CGG	p.G366R		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	366	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						AAGAGGATCCGGGGACTATGC	0.328													4	97					0	0	0.00024832	0	0
TRHDE	29953	broad.mit.edu	37	12	72863549	72863549	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:72863549G>T	uc001sxa.2	+	4	1222	c.1192G>T	c.(1192-1194)GTG>TTG	p.V398L		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	398	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TCTTTTAGCTGTGCCTAAGCA	0.348													5	101					1.06961e-07	1.39386e-06	0.000157383	1	0
GLIPR1L2	144321	broad.mit.edu	37	12	75807385	75807385	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:75807385G>T	uc001sxr.1	+	3	496	c.488G>T	c.(487-489)TGG>TTG	p.W163L	GLIPR1L2_uc001sxp.1_Missense_Mutation_p.W163L|GLIPR1L2_uc001sxq.1_Missense_Mutation_p.W56L	NM_152436	NP_689649	Q4G1C9	GRPL2_HUMAN	GLI pathogenesis-related 1 like 2	163						integral to membrane				ovary(1)	1						TAGCTTGTTTGGGACCACTCT	0.294													9	140					0.000442599	0.00445669	0.000442599	1	0
KRR1	11103	broad.mit.edu	37	12	75897745	75897745	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:75897745G>A	uc001sxt.2	-	7	811	c.770C>T	c.(769-771)CCA>CTA	p.P257L	KRR1_uc009zsc.2_Intron	NM_007043	NP_008974	Q13601	KRR1_HUMAN	HIV-1 rev binding protein 2	257	Lys-rich.				rRNA processing	nucleolus|ribonucleoprotein complex	RNA binding			ovary(1)|pancreas(1)	2						TTTTTTCTTTGGTTCCTTGCG	0.358													6	94					0	0	3.59834e-05	0	0
OSBPL8	114882	broad.mit.edu	37	12	76791602	76791602	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:76791602G>T	uc001sye.1	-	8	1024	c.544C>A	c.(544-546)CAA>AAA	p.Q182K	OSBPL8_uc001syf.1_Missense_Mutation_p.Q140K|OSBPL8_uc001syg.1_Missense_Mutation_p.Q140K|OSBPL8_uc001syh.1_Missense_Mutation_p.Q157K	NM_020841	NP_065892	Q9BZF1	OSBL8_HUMAN	oxysterol-binding protein-like protein 8 isoform	182	PH.				lipid transport		lipid binding			ovary(1)	1						CCATTTTTTTGGGTTTTATAG	0.378													6	55					3.59834e-05	0.000429	3.59834e-05	1	0
NAV3	89795	broad.mit.edu	37	12	78592398	78592398	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:78592398G>C	uc001syp.2	+	36	6633	c.6460G>C	c.(6460-6462)GGA>CGA	p.G2154R	NAV3_uc001syo.2_Missense_Mutation_p.G2132R|NAV3_uc010sub.1_Missense_Mutation_p.G1611R|NAV3_uc009zsf.2_Missense_Mutation_p.G963R	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	2154						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						ATATATTATTGGAACAATGAA	0.264										HNSCC(70;0.22)			5	81					0	0	0.000274275	0	0
PPP1R12A	4659	broad.mit.edu	37	12	80266607	80266607	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:80266607C>A	uc001syz.2	-	2	616	c.349G>T	c.(349-351)GGA>TGA	p.G117*	PPP1R12A_uc010suc.1_Nonsense_Mutation_p.G30*|PPP1R12A_uc001sza.2_Nonsense_Mutation_p.G117*|PPP1R12A_uc010sud.1_Nonsense_Mutation_p.G117*|PPP1R12A_uc001szb.2_Nonsense_Mutation_p.G117*|PPP1R12A_uc001szc.2_Nonsense_Mutation_p.G117*	NM_002480	NP_002471	O14974	MYPT1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	117	ANK 3.					contractile fiber	protein binding|signal transducer activity			ovary(2)|breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	7						TCAAGATATCCACAGGAAGCT	0.348													7	98					6.40141e-05	0.00075092	0.000978159	1	0
MYF5	4617	broad.mit.edu	37	12	81110921	81110921	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:81110921G>A	uc001szg.2	+	1	214	c.79G>A	c.(79-81)GAA>AAA	p.E27K		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	27					muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						CCCCGAGGGTGAATTTGGGGA	0.622													11	52					0	0	0.000978159	0	0
LIN7A	8825	broad.mit.edu	37	12	81205358	81205358	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:81205358C>T	uc001szj.1	-	5	781	c.588G>A	c.(586-588)ATG>ATA	p.M196I	LIN7A_uc001szk.1_RNA	NM_004664	NP_004655	O14910	LIN7A_HUMAN	lin-7 homolog A	196					exocytosis|protein complex assembly|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	L27 domain binding			ovary(1)|skin(1)	2						AGCGAGCCTCCATTTCTTCCA	0.418													8	45					0	0	0.000157383	0	0
C12orf50	160419	broad.mit.edu	37	12	88391938	88391938	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:88391938C>T	uc001tam.1	-	4	331	c.163G>A	c.(163-165)GGA>AGA	p.G55R	C12orf50_uc001tan.2_Missense_Mutation_p.G109R	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	55										skin(2)|ovary(1)	3						AGTGGAATTCCTTCCTGAATT	0.363													4	41					0	0	0.00024832	0	0
POC1B	282809	broad.mit.edu	37	12	89853418	89853418	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:89853418G>C	uc001tbc.2	-	10	1215	c.1110C>G	c.(1108-1110)ACC>ACG	p.T370T	POC1B_uc001tba.2_Silent_p.T328T|POC1B_uc001tbb.2_Silent_p.T240T|POC1B_uc010sun.1_RNA|POC1B_uc009zsp.2_RNA|POC1B_uc009zsq.2_RNA	NM_172240	NP_758440	Q8TC44	POC1B_HUMAN	WD repeat domain 51B	370	Poly-Thr.				cell projection organization	centriole|microtubule basal body				ovary(1)	1						GACTTACTGTGGTAGAATCAA	0.323													4	29					0	0	0.00024832	0	0
CCDC38	120935	broad.mit.edu	37	12	96273484	96273484	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:96273484G>T	uc001tek.1	-	12	1314	c.1080C>A	c.(1078-1080)TCC>TCA	p.S360S		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	360										skin(1)	1						CTACATCTTGGGAATATTGAA	0.338													9	154					0.000274275	0.00290969	0.000274275	1	0
ACTR6	64431	broad.mit.edu	37	12	100598741	100598741	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:100598741G>C	uc001thb.1	+	2	148	c.92G>C	c.(91-93)CGG>CCG	p.R31P	ACTR6_uc010svh.1_Missense_Mutation_p.R31P|ACTR6_uc001thc.1_5'UTR|ACTR6_uc001thd.1_Missense_Mutation_p.R31P|ACTR6_uc009ztu.1_5'UTR|ACTR6_uc001the.1_5'UTR|ACTR6_uc001thf.1_5'UTR|uc001thg.1_Intron	NM_022496	NP_071941	Q9GZN1	ARP6_HUMAN	ARP6 actin-related protein 6 homolog	31						cytoplasm|cytoskeleton				ovary(1)	1						TGTCAGTTCCGGTCAAAAACA	0.348													4	142					0	0	3.59834e-05	0	0
ANO4	121601	broad.mit.edu	37	12	101433806	101433806	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:101433806G>C	uc010svm.1	+	11	1543	c.971G>C	c.(970-972)TGG>TCG	p.W324S	ANO4_uc001thw.2_Missense_Mutation_p.W289S|ANO4_uc001thx.2_Missense_Mutation_p.W324S	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	324	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TATGAGTGCTGGGCCTCCTGG	0.438										HNSCC(74;0.22)			4	148					0	0	0.00024832	0	0
IGF1	3479	broad.mit.edu	37	12	102811690	102811690	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:102811690G>T	uc001tjp.3	-	4	713	c.494C>A	c.(493-495)ACA>AAA	p.T165K	IGF1_uc001tjn.2_Intron|IGF1_uc001tjm.2_Intron|IGF1_uc001tjo.2_Intron	NM_001111285	NP_001104755	P05019	IGF1_HUMAN	insulin-like growth factor 1 isoform 3	165					anti-apoptosis|bone mineralization involved in bone maturation|cellular component movement|DNA replication|glycolate metabolic process|muscle hypertrophy|myoblast differentiation|myoblast proliferation|myotube cell development|negative regulation of smooth muscle cell apoptosis|phosphatidylinositol-mediated signaling|platelet activation|platelet degranulation|positive regulation of activated T cell proliferation|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis|positive regulation of osteoblast differentiation|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of Ras protein signal transduction|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat5 protein|Ras protein signal transduction|regulation of multicellular organism growth|satellite cell maintenance involved in skeletal muscle regeneration	platelet alpha granule lumen	growth factor activity|hormone activity|insulin receptor binding|insulin-like growth factor receptor binding|integrin binding			central_nervous_system(1)|pancreas(1)	2						ACTTGCTTCTGTCCCCTCCTT	0.468													7	342					0.000274275	0.00290969	0.000274275	1	0
NT5DC3	51559	broad.mit.edu	37	12	104190697	104190697	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:104190697G>C	uc010swe.1	-	6	769	c.728C>G	c.(727-729)CCT>CGT	p.P243R		NM_001031701	NP_001026871	Q86UY8	NT5D3_HUMAN	5'-nucleotidase domain containing 3	243							hydrolase activity|metal ion binding			ovary(2)|skin(1)	3						CAGATGCACAGGCTCATAGTC	0.473													4	133					0	0	3.59834e-05	0	0
NFYB	4801	broad.mit.edu	37	12	104514240	104514240	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:104514240C>A	uc001tkl.1	-	7	730	c.529G>T	c.(529-531)GGC>TGC	p.G177C	NFYB_uc001tkk.1_Missense_Mutation_p.G175C	NM_006166	NP_006157	P25208	NFYB_HUMAN	nuclear transcription factor Y, beta	177	C domain.					CCAAT-binding factor complex	repressing transcription factor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)	1						GTTATTAAGCCAGCTGGTAAC	0.313													10	263					0.000978159	0.00917326	0.000978159	1	0
ALDH1L2	160428	broad.mit.edu	37	12	105434393	105434393	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:105434393G>C	uc001tlc.2	-	16	2070	c.1943C>G	c.(1942-1944)CCA>CGA	p.P648R	ALDH1L2_uc009zuo.2_Missense_Mutation_p.P103R|ALDH1L2_uc009zup.2_RNA	NM_001034173	NP_001029345	Q3SY69	AL1L2_HUMAN	aldehyde dehydrogenase 1 family, member L2	648	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process	mitochondrion	acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity|phosphopantetheine binding			skin(1)	1						ACCTGAGCCTGGAATGATGTT	0.468													5	273					0	0	0.000602214	0	0
APPL2	55198	broad.mit.edu	37	12	105600969	105600969	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:105600969C>G	uc001tlf.1	-	8	709	c.491G>C	c.(490-492)GGA>GCA	p.G164A	APPL2_uc010swt.1_Missense_Mutation_p.G121A|APPL2_uc001tlg.1_5'UTR|APPL2_uc010swu.1_Missense_Mutation_p.G170A|APPL2_uc009zuq.2_Missense_Mutation_p.G121A	NM_018171	NP_060641	Q8NEU8	DP13B_HUMAN	adaptor protein, phosphotyrosine interaction, PH	164	Required for RAB5A binding (By similarity).				cell cycle|cell proliferation|signal transduction	early endosome membrane|nucleus	protein binding			upper_aerodigestive_tract(1)	1						CACCTCTTTTCCGACTTCGGT	0.498													3	59					0	0	3.59834e-05	0	0
CKAP4	10970	broad.mit.edu	37	12	106633770	106633770	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:106633770C>G	uc001tlk.2	-	2	925	c.841G>C	c.(841-843)GGG>CGG	p.G281R		NM_006825	NP_006816	Q07065	CKAP4_HUMAN	cytoskeleton-associated protein 4	281	Potential.					ER-Golgi intermediate compartment membrane|integral to membrane|membrane fraction					0						TGCTTGTTCCCCTCAGATTCT	0.502													4	212					0	0	0.00024832	0	0
POLR3B	55703	broad.mit.edu	37	12	106763072	106763072	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:106763072G>T	uc001tlp.2	+	5	469	c.247G>T	c.(247-249)GGG>TGG	p.G83W	POLR3B_uc001tlq.2_Missense_Mutation_p.G25W	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	83					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						TATCTATGTTGGGCTTCCTGA	0.343													14	251					1.15088e-07	1.49695e-06	0.000422831	1	0
RFX4	5992	broad.mit.edu	37	12	107114555	107114555	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:107114555G>A	uc001tlr.2	+	13	1318	c.1252G>A	c.(1252-1254)GGG>AGG	p.G418R	RFX4_uc001tls.2_Missense_Mutation_p.G427R|RFX4_uc001tlt.2_Missense_Mutation_p.G427R|RFX4_uc001tlv.2_Missense_Mutation_p.G324R	NM_213594	NP_998759	Q33E94	RFX4_HUMAN	regulatory factor X4 isoform c	418	Necessary for dimerization.				transcription, DNA-dependent	nucleus	DNA binding			upper_aerodigestive_tract(1)	1						CAAGAGACAAGGGTCCTTGAA	0.463													14	61					0	0	0.000219431	0	0
MTERFD3	80298	broad.mit.edu	37	12	107371474	107371474	+	Nonsense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:107371474G>C	uc001tme.1	-	2	2838	c.1019C>G	c.(1018-1020)TCA>TGA	p.S340*	MTERFD3_uc001tmf.1_Nonsense_Mutation_p.S340*|MTERFD3_uc001tmg.1_Nonsense_Mutation_p.S340*|MTERFD3_uc001tmh.1_Nonsense_Mutation_p.S340*	NM_025198	NP_079474	Q49AM1	MTER3_HUMAN	transcription termination factor-like protein	340					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial nucleoid	transcription regulatory region DNA binding				0						TCTGTAGCCTGAGGAATTCAG	0.373													4	216					0	0	0.00024832	0	0
CRY1	1407	broad.mit.edu	37	12	107398999	107398999	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:107398999C>A	uc001tmi.3	-	3	1154	c.295G>T	c.(295-297)GAG>TAG	p.E99*		NM_004075	NP_004066	Q16526	CRY1_HUMAN	cryptochrome 1 (photolyase-like)	99	DNA photolyase.				DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	blue light photoreceptor activity|DNA photolyase activity|double-stranded DNA binding|nucleotide binding|protein binding			ovary(3)	3						GAATCATACTCAATTGAAAGT	0.323													7	139					6.40141e-05	0.00075092	0.000978159	1	0
ALKBH2	121642	broad.mit.edu	37	12	109530566	109530566	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:109530566G>T	uc001tnx.2	-	2	419	c.26C>A	c.(25-27)GCT>GAT	p.A9D	ALKBH2_uc001tny.2_Missense_Mutation_p.A9D|ALKBH2_uc010sxj.1_Missense_Mutation_p.A9D|ALKBH2_uc009zvd.2_Missense_Mutation_p.A9D|ALKBH2_uc010sxk.1_Missense_Mutation_p.A9D	NM_001145374	NP_001138846	Q6NS38	ALKB2_HUMAN	AlkB homolog 2	9					DNA dealkylation involved in DNA repair|oxidative DNA demethylation	nucleoplasm	cytosine C-5 DNA demethylase activity|damaged DNA binding|DNA-N1-methyladenine dioxygenase activity|ferrous iron binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0					Vitamin C(DB00126)	GCCCCCTTGAGCCCCTTTCAC	0.552								Direct_reversal_of_damage					7	162					0.000673444	0.00655963	0.000673444	1	0
ATP2A2	488	broad.mit.edu	37	12	110780039	110780039	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:110780039G>T	uc001tqk.3	+	15	2667	c.2104G>T	c.(2104-2106)GAT>TAT	p.D702Y	ATP2A2_uc001tql.3_Missense_Mutation_p.D702Y|ATP2A2_uc010sxy.1_Missense_Mutation_p.D675Y	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	702	Cytoplasmic (By similarity).	Magnesium (By similarity).	D -> N (in DD; moderate form).		ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						TCAGACTGGCGATGGCGTGAA	0.547													6	94					7.48243e-07	9.56199e-06	0.000442599	1	0
ATP2A2	488	broad.mit.edu	37	12	110780051	110780051	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:110780051G>T	uc001tqk.3	+	15	2679	c.2116G>T	c.(2116-2118)GAT>TAT	p.D706Y	ATP2A2_uc001tql.3_Missense_Mutation_p.D706Y|ATP2A2_uc010sxy.1_Missense_Mutation_p.D679Y	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	706	Cytoplasmic (By similarity).	Magnesium (By similarity).			ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						TGGCGTGAACGATGCTCCTGC	0.547													6	97					0.000442599	0.00445669	0.000442599	1	0
PTPN11	5781	broad.mit.edu	37	12	112888162	112888162	+	Missense_Mutation	SNP	G	C	C	rs121918471		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:112888162G>C	uc001ttx.2	+	3	558	c.178G>C	c.(178-180)GGT>CGT	p.G60R	PTPN11_uc001ttw.1_Missense_Mutation_p.G60R	NM_002834	NP_002825	Q06124	PTN11_HUMAN	protein tyrosine phosphatase, non-receptor type	60	SH2 1.		G -> A (in NS1).|G -> V (in myelodysplastic syndrome).		axon guidance|cell junction assembly|ephrin receptor signaling pathway|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|platelet activation|regulation of cell adhesion mediated by integrin|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol	non-membrane spanning protein tyrosine phosphatase activity|protein binding	p.G60V(22)|p.G60R(4)|p.G60A(1)		haematopoietic_and_lymphoid_tissue(375)|lung(6)|autonomic_ganglia(2)|soft_tissue(2)|central_nervous_system(2)|large_intestine(1)|skin(1)|ovary(1)|NS(1)|kidney(1)	392						TCAGAACACTGGTGATTACTA	0.418			Mis		JMML|AML|MDS		Noonan Syndrome		Noonan_syndrome				4	140					0	0	0.000602214	0	0
PTPN11	5781	broad.mit.edu	37	12	112893802	112893802	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:112893802C>A	uc001ttx.2	+	6	1071	c.691C>A	c.(691-693)CGA>AGA	p.R231R	PTPN11_uc001ttw.1_Silent_p.R231R	NM_002834	NP_002825	Q06124	PTN11_HUMAN	protein tyrosine phosphatase, non-receptor type	231					axon guidance|cell junction assembly|ephrin receptor signaling pathway|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|platelet activation|regulation of cell adhesion mediated by integrin|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol	non-membrane spanning protein tyrosine phosphatase activity|protein binding			haematopoietic_and_lymphoid_tissue(375)|lung(6)|autonomic_ganglia(2)|soft_tissue(2)|central_nervous_system(2)|large_intestine(1)|skin(1)|ovary(1)|NS(1)|kidney(1)	392						AAGCAGAGTTCGAGAACTAAG	0.358			Mis		JMML|AML|MDS		Noonan Syndrome		Noonan_syndrome				5	83					3.59834e-05	0.000429	3.59834e-05	1	0
RPH3A	22895	broad.mit.edu	37	12	113327859	113327860	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:113327859_113327860CG>AT	uc010syl.1	+	18	1956_1957	c.1594_1595CG>AT	c.(1594-1596)CGA>ATA	p.R532I	RPH3A_uc001ttz.2_Missense_Mutation_p.R532I|RPH3A_uc001tty.2_Missense_Mutation_p.R528I|RPH3A_uc009zwe.1_Missense_Mutation_p.R528I|RPH3A_uc010sym.1_Missense_Mutation_p.R483I|RPH3A_uc001tua.2_Missense_Mutation_p.R292I	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	532					intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		CGGGTCAGCCCGAGGCATGGCC	0.5													10	171					0	0	6.4e-05	0	0
OAS2	4939	broad.mit.edu	37	12	113424884	113424884	+	Silent	SNP	C	T	T	rs145718121	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:113424884C>T	uc001tuj.2	+	2	359	c.219C>T	c.(217-219)TCC>TCT	p.S73S	OAS2_uc001tuh.2_Silent_p.S73S|OAS2_uc001tui.1_Silent_p.S73S	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	73	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						GAGGCAACTCCGATGGTACCC	0.463													16	108					0	0	0.000566183	0	0
PLBD2	196463	broad.mit.edu	37	12	113825582	113825582	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:113825582G>C	uc001tve.2	+	11	1508	c.1473G>C	c.(1471-1473)CTG>CTC	p.L491L	PLBD2_uc001tvf.2_Silent_p.L459L	NM_173542	NP_775813	Q8NHP8	PLBL2_HUMAN	phospholipase B domain containing 2 isoform 1	491					lipid catabolic process	lysosomal lumen	hydrolase activity				0						CTCTGTCACTGTGCAAAGCCT	0.592													4	247					0	0	3.59834e-05	0	0
RBM19	9904	broad.mit.edu	37	12	114377953	114377953	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:114377953G>A	uc009zwi.2	-	15	1894	c.1750C>T	c.(1750-1752)CGA>TGA	p.R584*	RBM19_uc001tvn.3_Nonsense_Mutation_p.R584*|RBM19_uc001tvm.2_Nonsense_Mutation_p.R584*	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	584					multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					GTCTTGCTTCGCTCTGCTGCA	0.632													6	96					0	0	3.59834e-05	0	0
MED13L	23389	broad.mit.edu	37	12	116444179	116444179	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:116444179G>C	uc001tvw.2	-	12	2331	c.2276C>G	c.(2275-2277)CCA>CGA	p.P759R		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	759					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		GGAATGACCTGGTGTAGTGAC	0.418													4	56					0	0	8.12818e-05	0	0
HSPB8	26353	broad.mit.edu	37	12	119631576	119631576	+	Silent	SNP	T	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:119631576T>G	uc001txb.2	+	3	1027	c.504T>G	c.(502-504)GCT>GCG	p.A168A	HSPB8_uc001txc.2_3'UTR	NM_014365	NP_055180	Q9UJY1	HSPB8_HUMAN	heat shock 22kDa protein 8	168					cell death|response to heat	cytoplasm|nucleus	identical protein binding|protein serine/threonine kinase activity			central_nervous_system(1)|skin(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TCATCGAAGCTCCCCAGGTCC	0.507													5	98					0	0	0.000602214	0	0
CIT	11113	broad.mit.edu	37	12	120198832	120198832	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:120198832G>T	uc001txi.1	-	19	2259	c.2206C>A	c.(2206-2208)CTG>ATG	p.L736M	CIT_uc001txh.1_Missense_Mutation_p.L270M|CIT_uc001txj.1_Missense_Mutation_p.L778M	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	736	Potential.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		TTGTCAGCCAGGTCTTTCTTT	0.493													7	124					2.17888e-05	0.000264662	0.000442599	1	0
CIT	11113	broad.mit.edu	37	12	120221811	120221811	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:120221811C>T	uc001txi.1	-	12	1499	c.1446G>A	c.(1444-1446)GTG>GTA	p.V482V	CIT_uc001txh.1_Silent_p.V16V|CIT_uc001txj.1_Silent_p.V482V	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	482	Potential.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		GCACAGCCTCCACCTCTGACA	0.512													6	187					0	0	3.59834e-05	0	0
MSI1	4440	broad.mit.edu	37	12	120789176	120789176	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:120789176G>T	uc001tye.1	-	11	825	c.761C>A	c.(760-762)CCG>CAG	p.P254Q		NM_002442	NP_002433	O43347	MSI1H_HUMAN	musashi 1	254					nervous system development	cytoplasm|nucleus	nucleotide binding			central_nervous_system(2)|breast(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGGGGCGCTCGGGAGAGGGGT	0.562													4	15					3.59834e-05	0.000429	3.59834e-05	1	0
RNF10	9921	broad.mit.edu	37	12	121003298	121003298	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:121003298G>C	uc001typ.3	+	12	2334	c.1851G>C	c.(1849-1851)AGG>AGC	p.R617S	RNF10_uc010szk.1_RNA|RNF10_uc001tyq.3_Missense_Mutation_p.R528S	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	617					negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GAGAGCGCAGGATTGAGATAG	0.463													3	85					0	0	6.4e-05	0	0
HNF1A	6927	broad.mit.edu	37	12	121416718	121416718	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:121416718C>T	uc001tzg.2	+	1	170	c.147C>T	c.(145-147)TCC>TCT	p.S49S	HNF1A_uc001tze.1_Silent_p.S49S|HNF1A_uc001tzf.2_Silent_p.S49S|HNF1A_uc010szn.1_Silent_p.S49S	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	49					glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding	p.?(1)		liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					AGGGGGAGTCCTGCGGCGGCG	0.682									Hepatic_Adenoma_Familial_Clustering_of				12	198					0	0	0.000219431	0	0
HNF1A	6927	broad.mit.edu	37	12	121437183	121437183	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:121437183C>G	uc001tzg.2	+	8	1637	c.1614C>G	c.(1612-1614)CCC>CCG	p.P538P	HNF1A_uc010szn.1_Silent_p.P538P	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	538					glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GCCTCACGCCCACCAAGCAGG	0.682									Hepatic_Adenoma_Familial_Clustering_of				4	152					0	0	0.00024832	0	0
OASL	8638	broad.mit.edu	37	12	121471346	121471346	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:121471346G>T	uc001tzj.1	-	2	405	c.399C>A	c.(397-399)CCC>CCA	p.P133P	OASL_uc001tzk.1_Silent_p.P133P	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	133					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CGAGAGCATCGGGGACTCTCT	0.587													6	225					3.59834e-05	0.000429	3.59834e-05	1	0
ZCCHC8	55596	broad.mit.edu	37	12	122966629	122966630	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:122966629_122966630CC>AA	uc001ucn.2	-	9	868_869	c.737_738GG>TT	c.(736-738)CGG>CTT	p.R246L	ZCCHC8_uc001ucm.2_Missense_Mutation_p.R8L|ZCCHC8_uc009zxp.2_Missense_Mutation_p.R8L|ZCCHC8_uc009zxq.2_Missense_Mutation_p.R8L	NM_017612	NP_060082	Q6NZY4	ZCHC8_HUMAN	zinc finger, CCHC domain containing 8	246						catalytic step 2 spliceosome	nucleic acid binding|protein binding|zinc ion binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.25e-05)|Epithelial(86;0.000113)|BRCA - Breast invasive adenocarcinoma(302;0.202)		GAGCAGCATTCCGAGGCTACAT	0.351													6	138					0	0	6.4e-05	0	0
KNTC1	9735	broad.mit.edu	37	12	123022896	123022896	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:123022896G>T	uc001ucv.2	+	4	424	c.261G>T	c.(259-261)GTG>GTT	p.V87V	KNTC1_uc010taf.1_Silent_p.V87V	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	87					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		ATACTGAAGTGGATGTAGTTG	0.318													5	38					8.12818e-05	0.000938396	8.12818e-05	1	0
KNTC1	9735	broad.mit.edu	37	12	123028803	123028803	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:123028803C>G	uc001ucv.2	+	8	819	c.656C>G	c.(655-657)CCT>CGT	p.P219R	KNTC1_uc010taf.1_Intron	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	219					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		AGTGAAGTTCCTGTGATAATT	0.308													5	210					0	0	3.59834e-05	0	0
GPR109A	338442	broad.mit.edu	37	12	123187411	123187411	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:123187411G>A	uc001ucx.1	-	1	494	c.420C>T	c.(418-420)TCC>TCT	p.S140S	GPR81_uc001ucw.1_Intron	NM_177551	NP_808219	Q8TDS4	HCAR2_HUMAN	G protein-coupled receptor 109A	140	Cytoplasmic (Potential).				negative regulation of lipid catabolic process|neutrophil apoptosis|positive regulation of adiponectin secretion|positive regulation of neutrophil apoptosis	integral to membrane|plasma membrane	nicotinic acid receptor activity|purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	CTGTCCGATTGGAGATCTTGT	0.567													27	83					0	0	0.00106085	0	0
MPHOSPH9	10198	broad.mit.edu	37	12	123687342	123687342	+	Missense_Mutation	SNP	G	T	T	rs141638342	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:123687342G>T	uc001uel.2	-	6	1261	c.1154C>A	c.(1153-1155)CCG>CAG	p.P385Q	MPHOSPH9_uc010tal.1_Intron|MPHOSPH9_uc010tam.1_RNA|MPHOSPH9_uc001uem.2_Intron	NM_022782	NP_073619	Q99550	MPP9_HUMAN	M-phase phosphoprotein 9	385					M phase of mitotic cell cycle	centriole|Golgi membrane					0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000182)|Epithelial(86;0.00046)|BRCA - Breast invasive adenocarcinoma(302;0.169)		ATATACTGACGGAAACGTGGA	0.438													6	180					3.59834e-05	0.000429	3.59834e-05	1	0
DDX55	57696	broad.mit.edu	37	12	124101059	124101059	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:124101059G>C	uc001ufi.2	+	10	982	c.958G>C	c.(958-960)GGG>CGG	p.G320R	DDX55_uc001ufh.2_Missense_Mutation_p.G173R|DDX55_uc001ufj.1_Missense_Mutation_p.G173R|DDX55_uc001ufk.2_Missense_Mutation_p.G173R|DDX55_uc001ufl.2_5'Flank	NM_020936	NP_065987	Q8NHQ9	DDX55_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	320	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000142)|Epithelial(86;0.000637)|all cancers(50;0.00772)		ATTTCCTAGTGGGATTTTAGT	0.473													4	125					0	0	0.00024832	0	0
TCTN2	79867	broad.mit.edu	37	12	124158317	124158318	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:124158317_124158318GG>TT	uc001ufp.2	+	4	551_552	c.423_424GG>TT	c.(421-426)GTGGAA>GTTTAA	p.E142*	TCTN2_uc009zya.2_Nonsense_Mutation_p.E141*	NM_024809	NP_079085	Q96GX1	TECT2_HUMAN	tectonic family member 2 isoform 1	142	Extracellular (Potential).				cilium assembly|smoothened signaling pathway	integral to membrane				ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000163)|Epithelial(86;0.000502)|all cancers(50;0.00451)		TCATTCAAGTGGAAATTTATGC	0.381													10	244					0	0	6.4e-05	0	0
DNAH10	196385	broad.mit.edu	37	12	124256171	124256171	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:124256171G>T	uc001uft.3	+	3	164	c.139G>T	c.(139-141)GAA>TAA	p.E47*		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	47	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		ACTGAGAACCGAATCTCTAGG	0.408													5	52					0.000442599	0.00445669	0.000442599	1	0
DNAH10	196385	broad.mit.edu	37	12	124350501	124350502	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:124350501_124350502GG>TT	uc001uft.3	+	40	6719_6720	c.6694_6695GG>TT	c.(6694-6696)GGA>TTA	p.G2232L		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2232	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TATCCAGGTTGGAGATTTACAG	0.361													7	154					0	0	6.4e-05	0	0
DNAH10	196385	broad.mit.edu	37	12	124382382	124382382	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:124382382C>A	uc001uft.3	+	54	9017	c.8992C>A	c.(8992-8994)CAA>AAA	p.Q2998K		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2998	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CTTGGTTCACCAATCCGTGGA	0.378													8	95					0.000274275	0.00290969	0.000274275	1	0
BRI3BP	140707	broad.mit.edu	37	12	125497131	125497131	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:125497131G>C	uc001uha.1	+	2	408	c.265G>C	c.(265-267)GAG>CAG	p.E89Q		NM_080626	NP_542193	Q8WY22	BRI3B_HUMAN	BRI3-binding protein	89						integral to membrane|mitochondrial outer membrane				ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.35e-05)|Epithelial(86;0.000426)|all cancers(50;0.00576)		TATGTTCGTGGAGACACTGTG	0.488													4	250					0	0	3.59834e-05	0	0
AACS	65985	broad.mit.edu	37	12	125591750	125591750	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:125591750C>A	uc001uhc.2	+	8	1057	c.851C>A	c.(850-852)CCA>CAA	p.P284Q	AACS_uc009zyg.2_RNA|AACS_uc001uhd.2_Missense_Mutation_p.P284Q|AACS_uc009zyh.2_RNA|AACS_uc009zyi.2_5'UTR	NM_023928	NP_076417	Q86V21	AACS_HUMAN	acetoacetyl-CoA synthetase	284					fatty acid metabolic process	cytosol	acetoacetate-CoA ligase activity|ATP binding			ovary(1)|liver(1)|central_nervous_system(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;9.82e-05)|Epithelial(86;0.000642)|all cancers(50;0.00843)		TTCAGCCACCCACTGTTCATC	0.617													6	62					5.18039e-06	6.44204e-05	0.000157383	1	0
TMEM132D	121256	broad.mit.edu	37	12	129558471	129558471	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:129558471C>G	uc009zyl.1	-	9	3577	c.3249G>C	c.(3247-3249)GGG>GGC	p.G1083G	TMEM132D_uc001uia.2_Silent_p.G621G	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	1083	Cytoplasmic (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		CTTTGCAGTCCCCAGGGTCCA	0.507													4	131					0	0	0.000157383	0	0
ULK1	8408	broad.mit.edu	37	12	132393304	132393304	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:132393304C>T	uc001uje.2	+	6	700	c.432C>T	c.(430-432)ATC>ATT	p.I144I		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	144	Protein kinase.				autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		CGCAGAACATCCTGCTGTCCA	0.522													6	14					0	0	3.59834e-05	0	0
EP400	57634	broad.mit.edu	37	12	132474566	132474566	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:132474566A>G	uc001ujn.2	+	7	2502	c.2467A>G	c.(2467-2469)AAG>GAG	p.K823E	EP400_uc001ujl.2_Missense_Mutation_p.K822E|EP400_uc001ujm.2_Missense_Mutation_p.K823E|EP400_uc001ujj.1_Missense_Mutation_p.K786E|EP400_uc001ujk.2_Missense_Mutation_p.K859E	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	859	HSA.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		AGAAAGGGGGAAGAAGGAAGA	0.522													3	94					0	0	6.4e-05	0	0
EP400	57634	broad.mit.edu	37	12	132490681	132490681	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:132490681G>C	uc001ujn.2	+	13	2995	c.2960G>C	c.(2959-2961)AGG>ACG	p.R987T	EP400_uc001ujl.2_Missense_Mutation_p.R986T|EP400_uc001ujm.2_Missense_Mutation_p.R987T	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	1023	Interactions with RUVBL1 and RUVBL2.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		CCAGGCGACAGGGAGAGTCGC	0.458													5	46					0	0	3.59834e-05	0	0
POLE	5426	broad.mit.edu	37	12	133220476	133220476	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:133220476C>T	uc001uks.1	-	33	4281	c.4237G>A	c.(4237-4239)GAG>AAG	p.E1413K	POLE_uc001ukq.1_5'Flank|POLE_uc001ukr.1_Missense_Mutation_p.E217K|POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Missense_Mutation_p.E1386K	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	1413					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GCGTTGATCTCGTTGATGTGT	0.547								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					7	100					0	0	8.12818e-05	0	0
POLE	5426	broad.mit.edu	37	12	133253988	133253988	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:133253988C>G	uc001uks.1	-	8	806	c.762G>C	c.(760-762)CCG>CCC	p.P254P	POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Silent_p.P227P	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	254					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		TGATTTCTACCGGAAAAGCAT	0.413								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					4	97					0	0	0.00024832	0	0
GOLGA3	2802	broad.mit.edu	37	12	133378402	133378402	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:133378402A>G	uc001ukz.1	-	8	2310	c.1751T>C	c.(1750-1752)CTG>CCG	p.L584P	GOLGA3_uc001ula.1_Missense_Mutation_p.L584P|GOLGA3_uc001ulb.2_Missense_Mutation_p.L584P	NM_005895	NP_005886	Q08378	GOGA3_HUMAN	Golgi autoantigen, golgin subfamily a, 3	584	Gln-rich.|Potential.				intra-Golgi vesicle-mediated transport	Golgi cisterna membrane|Golgi transport complex	protein binding|transporter activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.27e-08)|Epithelial(86;3.34e-07)|all cancers(50;9.4e-06)		CTCCTGTGCCAGGGCGAGCTG	0.642													4	87					0	0	0.00024832	0	0
CHFR	55743	broad.mit.edu	37	12	133433143	133433143	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:133433143G>T	uc001ulf.2	-	10	1260	c.1176C>A	c.(1174-1176)CCC>CCA	p.P392P	CHFR_uc001ulc.1_RNA|CHFR_uc001ule.2_Silent_p.P380P|CHFR_uc010tbs.1_Silent_p.P392P|CHFR_uc001uld.2_Silent_p.P351P|CHFR_uc010tbt.1_Silent_p.P300P	NM_001161344	NP_001154816	Q96EP1	CHFR_HUMAN	checkpoint with forkhead and ring finger domains	392					cell division|mitosis|mitotic cell cycle checkpoint|modification-dependent protein catabolic process|protein polyubiquitination	PML body	nucleotide binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.00552)|all_epithelial(31;0.226)		OV - Ovarian serous cystadenocarcinoma(86;2.59e-08)|Epithelial(86;6.38e-07)|all cancers(50;1.56e-05)		GCCTGACTTTGGGCTGCAGCA	0.463													9	294					5.50884e-06	6.81381e-05	0.00010058	1	0
LOC284232	284232	broad.mit.edu	37	13	19413003	19413003	+	RNA	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:19413003C>G	uc010tcj.1	-	1		c.33107G>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ATGATTACCTCTGAAGTTAAA	0.303													4	113					0	0	0.00024832	0	0
LOC284232	284232	broad.mit.edu	37	13	19428957	19428957	+	RNA	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:19428957G>C	uc010tcj.1	-	1		c.17153C>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						CCTTTTCCATGGGAAGGTCCA	0.318													5	197					0	0	0.000442599	0	0
TPTE2	93492	broad.mit.edu	37	13	20056679	20056679	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:20056679T>G	uc001umd.2	-	5	339	c.128A>C	c.(127-129)GAA>GCA	p.E43A	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Missense_Mutation_p.E43A|TPTE2_uc001ume.2_Intron|TPTE2_uc009zzm.2_Intron|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	43						endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		GGAAAGTCGTTCTAACATACT	0.313													7	156					0	0	8.12818e-05	0	0
TPTE2	93492	broad.mit.edu	37	13	20056686	20056686	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:20056686T>C	uc001umd.2	-	5	332	c.121A>G	c.(121-123)ATG>GTG	p.M41V	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Missense_Mutation_p.M41V|TPTE2_uc001ume.2_Intron|TPTE2_uc009zzm.2_Intron|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	41						endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		CGTTCTAACATACTTTAGCCA	0.313													7	147					0	0	0.000274275	0	0
PSPC1	55269	broad.mit.edu	37	13	20283704	20283704	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:20283704G>C	uc001uml.2	-	7	1380	c.1194C>G	c.(1192-1194)CCC>CCG	p.P398P	PSPC1_uc001umj.1_Intron|PSPC1_uc001umk.1_Intron	NM_001042414	NP_001035879	Q8WXF1	PSPC1_HUMAN	paraspeckle protein 1	398	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleolus	nucleotide binding|protein binding|RNA binding			breast(1)	1		all_cancers(29;1.25e-22)|all_lung(29;1.97e-20)|all_epithelial(30;2.29e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;4.63e-06)|Epithelial(112;2.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00256)|Lung(94;0.00975)|LUSC - Lung squamous cell carcinoma(192;0.0483)		TTGCTCCACGGGGACCCATAT	0.388													4	131					0	0	0.00024832	0	0
ZMYM5	9205	broad.mit.edu	37	13	20425854	20425854	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:20425854G>C	uc010tcn.1	-	3	732	c.467C>G	c.(466-468)TCC>TGC	p.S156C	ZMYM5_uc001umm.1_5'UTR|ZMYM5_uc001umn.2_Missense_Mutation_p.S156C|ZMYM5_uc001umo.2_Missense_Mutation_p.S156C	NM_001142684	NP_001136156	Q9UJ78	ZMYM5_HUMAN	zinc finger protein 237 isoform 3	156						nucleus	zinc ion binding				0		all_cancers(29;2.96e-22)|all_epithelial(30;3.76e-20)|all_lung(29;4.38e-20)|Lung NSC(5;5.8e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.61e-05)|Epithelial(112;4.89e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00171)|Lung(94;0.00942)|LUSC - Lung squamous cell carcinoma(192;0.0431)		ACTGGAAGTGGAGAAATCCAA	0.373													4	170					0	0	3.59834e-05	0	0
SGCG	6445	broad.mit.edu	37	13	23808844	23808844	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:23808844C>G	uc001uom.2	+	3	445	c.290C>G	c.(289-291)TCC>TGC	p.S97C	SGCG_uc009zzv.2_Missense_Mutation_p.S97C|SGCG_uc009zzw.2_Missense_Mutation_p.S97C	NM_000231	NP_000222	Q13326	SGCG_HUMAN	gamma sarcoglycan	97	Extracellular (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma					0		all_cancers(29;4.34e-23)|all_epithelial(30;4.4e-19)|all_lung(29;2.45e-18)|Lung SC(185;0.0228)|Breast(139;0.188)		all cancers(112;0.00255)|Epithelial(112;0.0129)|OV - Ovarian serous cystadenocarcinoma(117;0.0365)|Lung(94;0.205)		GAAATACACTCCAGAGTGGTA	0.338													4	201					0	0	3.59834e-05	0	0
SACS	26278	broad.mit.edu	37	13	23909956	23909956	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:23909956C>G	uc001uon.2	-	10	8648	c.8059G>C	c.(8059-8061)GGA>CGA	p.G2687R	SACS_uc001uoo.2_Missense_Mutation_p.G2540R|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	2687					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		AAATGGGTTCCCAGATAAAGA	0.418													3	57					0	0	6.4e-05	0	0
RNF17	56163	broad.mit.edu	37	13	25356080	25356080	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:25356080C>A	uc001upr.2	+	6	650	c.609C>A	c.(607-609)TCC>TCA	p.S203S	RNF17_uc010tdd.1_Silent_p.S62S|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Silent_p.S203S|RNF17_uc001ups.2_Silent_p.S142S|RNF17_uc001upq.1_Silent_p.S203S	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	203					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TTTTTGATTCCAGGTTAGTAA	0.338													5	48					8.12818e-05	0.000938396	8.12818e-05	1	0
CENPJ	55835	broad.mit.edu	37	13	25458340	25458340	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:25458340G>C	uc001upt.3	-	15	3915	c.3662C>G	c.(3661-3663)CCG>CGG	p.P1221R	CENPJ_uc010tdf.1_RNA|CENPJ_uc010aae.2_RNA|CENPJ_uc010aaf.2_RNA	NM_018451	NP_060921	Q9HC77	CENPJ_HUMAN	centromere protein J	1221					cell division|centriole replication|G2/M transition of mitotic cell cycle|microtubule nucleation|microtubule polymerization	centriole|cytosol|gamma-tubulin small complex|microtubule	protein domain specific binding|tubulin binding			ovary(2)	2		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.00793)|Epithelial(112;0.0411)|OV - Ovarian serous cystadenocarcinoma(117;0.139)		CAGTCCCTCCGGGTATGTCGT	0.433													3	81					0	0	0.00024832	0	0
CENPJ	55835	broad.mit.edu	37	13	25480915	25480915	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:25480915G>T	uc001upt.3	-	7	1514	c.1261C>A	c.(1261-1263)CAG>AAG	p.Q421K	CENPJ_uc010tdf.1_RNA|CENPJ_uc010aae.2_RNA|CENPJ_uc010aaf.2_RNA|CENPJ_uc001upu.2_5'Flank	NM_018451	NP_060921	Q9HC77	CENPJ_HUMAN	centromere protein J	421					cell division|centriole replication|G2/M transition of mitotic cell cycle|microtubule nucleation|microtubule polymerization	centriole|cytosol|gamma-tubulin small complex|microtubule	protein domain specific binding|tubulin binding			ovary(2)	2		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.00793)|Epithelial(112;0.0411)|OV - Ovarian serous cystadenocarcinoma(117;0.139)		GTTTTCCGCTGGAGTTGCTGT	0.433													7	128					7.48243e-07	9.56199e-06	0.000442599	1	0
NUPL1	9818	broad.mit.edu	37	13	25882070	25882070	+	Silent	SNP	A	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:25882070A>C	uc001uqi.2	+	2	480	c.234A>C	c.(232-234)CTA>CTC	p.L78L	NUPL1_uc001uqg.1_Silent_p.L78L|NUPL1_uc001uqj.2_Silent_p.L78L	NM_014089	NP_054808	Q9BVL2	NUPL1_HUMAN	nucleoporin like 1 isoform a	78	14 X 2 AA repeats of F-G.				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore					0		Lung SC(185;0.0225)|Breast(139;0.0351)		all cancers(112;0.0092)|Epithelial(112;0.0477)|OV - Ovarian serous cystadenocarcinoma(117;0.165)|GBM - Glioblastoma multiforme(144;0.244)		GGTTCACTCTAGGAGGAACAA	0.443													4	114					0	0	0.00024832	0	0
RNF6	6049	broad.mit.edu	37	13	26792677	26792677	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:26792677G>T	uc001uqo.2	-	4	551	c.260C>A	c.(259-261)CCT>CAT	p.P87H	RNF6_uc001uqn.1_Missense_Mutation_p.P87H|RNF6_uc010aak.2_Missense_Mutation_p.P87H|RNF6_uc001uqp.2_Missense_Mutation_p.P87H|RNF6_uc001uqq.2_Missense_Mutation_p.P87H|RNF6_uc010tdk.1_Translation_Start_Site	NM_183044	NP_898865	Q9Y252	RNF6_HUMAN	ring finger protein 6	87					negative regulation of axon extension|positive regulation of transcription, DNA-dependent|protein K27-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|regulation of androgen receptor signaling pathway|ubiquitin-dependent protein catabolic process	axon|cytoplasm|PML body	androgen receptor binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.00893)|Epithelial(112;0.0481)|OV - Ovarian serous cystadenocarcinoma(117;0.148)|GBM - Glioblastoma multiforme(144;0.23)|Lung(94;0.245)		TCTCAAGTCAGGCTGAGATGC	0.403													9	177					0.000978159	0.00917326	0.000978159	1	0
USPL1	10208	broad.mit.edu	37	13	31195958	31195958	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:31195958G>C	uc001utc.2	+	3	589	c.157G>C	c.(157-159)GGA>CGA	p.G53R	USPL1_uc001utb.2_5'UTR|USPL1_uc001utd.2_5'UTR	NM_005800	NP_005791	Q5W0Q7	USPL1_HUMAN	ubiquitin specific peptidase like 1	53					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			pancreas(2)|skin(1)	3		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0306)|Epithelial(112;0.131)|OV - Ovarian serous cystadenocarcinoma(117;0.134)		TAGAGAGAAGGGAAAGTTAAA	0.303													6	279					0	0	0.000157383	0	0
USPL1	10208	broad.mit.edu	37	13	31233132	31233132	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:31233132C>G	uc001utc.2	+	9	3350	c.2918C>G	c.(2917-2919)GCG>GGG	p.A973G	USPL1_uc001utd.2_Missense_Mutation_p.A644G|USPL1_uc001ute.1_Missense_Mutation_p.A644G	NM_005800	NP_005791	Q5W0Q7	USPL1_HUMAN	ubiquitin specific peptidase like 1	973					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			pancreas(2)|skin(1)	3		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0306)|Epithelial(112;0.131)|OV - Ovarian serous cystadenocarcinoma(117;0.134)		GAAATTTTAGCGGAATTATTG	0.428													25	166					0	0	0.000586117	0	0
RXFP2	122042	broad.mit.edu	37	13	32376490	32376490	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:32376490G>C	uc001utt.2	+	18	2284	c.2213G>C	c.(2212-2214)GGG>GCG	p.G738A	RXFP2_uc010aba.2_Missense_Mutation_p.G697A	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	738	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		CTGAAACTTGGGGTTTTGAAC	0.373													5	316					0	0	0.000157383	0	0
EEF1DP3	196549	broad.mit.edu	37	13	32527522	32527522	+	RNA	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:32527522C>G	uc001utu.2	+	4		c.1280C>G			EEF1DP3_uc010tdv.1_Intron|uc001utv.2_RNA					Homo sapiens similar to hypothetical protein FLJ20897, mRNA (cDNA clone IMAGE:5267252).												0						TGTGTGTGCCCGCGTGCATGA	0.443													5	53					0	0	0.000602214	0	0
BRCA2	675	broad.mit.edu	37	13	32914451	32914451	+	Missense_Mutation	SNP	C	G	G	rs80358828		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:32914451C>G	uc001uub.1	+	11	6186	c.5959C>G	c.(5959-5961)CAG>GAG	p.Q1987E		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	1987	BRCA2 7.				cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		AAAATCTGTCCAGGTATCAGA	0.348			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			7	172					0	0	0.000274275	0	0
NBEA	26960	broad.mit.edu	37	13	35716493	35716493	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:35716493C>G	uc001uvb.2	+	19	2630	c.2424C>G	c.(2422-2424)ACC>ACG	p.T808T		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	808						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TGACTGTCACCACATACAACA	0.289													7	164					0	0	0.00010058	0	0
CCNA1	8900	broad.mit.edu	37	13	37016407	37016407	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:37016407C>A	uc001uvr.3	+	8	1662	c.1312C>A	c.(1312-1314)CAG>AAG	p.Q438K	CCNA1_uc010teo.1_Missense_Mutation_p.Q394K|CCNA1_uc010abq.2_Missense_Mutation_p.Q394K|CCNA1_uc010abp.2_Missense_Mutation_p.Q394K|CCNA1_uc001uvs.3_Missense_Mutation_p.Q437K|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	438					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		CCATCGACCTCAGCAAGCAAT	0.398													7	110					0.000157383	0.00173811	0.000157383	1	0
C13orf23	80209	broad.mit.edu	37	13	39588167	39588167	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:39588167A>G	uc001uwy.2	-	11	2095	c.1222T>C	c.(1222-1224)TTT>CTT	p.F408L	C13orf23_uc001uwz.2_Missense_Mutation_p.F386L	NM_025138	NP_079414	Q86XN7	CM023_HUMAN	hypothetical protein LOC80209 isoform 1	408	Ser-rich.									ovary(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)	5		Lung NSC(96;6.01e-07)|Breast(139;0.00394)|Prostate(109;0.00676)|Lung SC(185;0.0548)|Hepatocellular(188;0.114)		all cancers(112;3.7e-08)|Epithelial(112;4.28e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00114)|BRCA - Breast invasive adenocarcinoma(63;0.00366)|GBM - Glioblastoma multiforme(144;0.0146)		CTGGTGGAAAAGGGGAGGCTA	0.522													3	92					0	0	0.000602214	0	0
NHLRC3	387921	broad.mit.edu	37	13	39612790	39612790	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:39612790G>T	uc001uxc.2	+	1	336	c.14G>T	c.(13-15)TGG>TTG	p.W5L	C13orf23_uc001uwy.2_5'Flank|C13orf23_uc001uwz.2_5'Flank|NHLRC3_uc001uxa.1_Missense_Mutation_p.W5L|NHLRC3_uc001uxb.1_Missense_Mutation_p.W5L|NHLRC3_uc001uxd.2_Missense_Mutation_p.W5L|NHLRC3_uc001uxe.2_Intron	NM_001012754	NP_001012772	Q5JS37	NHLC3_HUMAN	NHL repeat containing 3 isoform a	5						extracellular region				skin(1)	1		Lung NSC(96;6.01e-07)|Breast(139;0.00394)|Prostate(109;0.00676)|Lung SC(185;0.0548)|Hepatocellular(188;0.114)		all cancers(112;2.37e-08)|Epithelial(112;3.14e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00101)|BRCA - Breast invasive adenocarcinoma(63;0.00335)|GBM - Glioblastoma multiforme(144;0.0128)		GCGAGATTCTGGGTCTGCGTA	0.572													7	152					0.000442599	0.00445669	0.000442599	1	0
COG6	57511	broad.mit.edu	37	13	40293484	40293484	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:40293484C>G	uc001uxh.2	+	14	1496	c.1396C>G	c.(1396-1398)CGT>GGT	p.R466G	COG6_uc001uxi.2_Missense_Mutation_p.R414G|COG6_uc010acb.2_Missense_Mutation_p.R466G	NM_020751	NP_065802	Q9Y2V7	COG6_HUMAN	component of oligomeric golgi complex 6 isoform	466					protein transport	Golgi membrane|Golgi transport complex				kidney(1)|skin(1)	2		Lung NSC(96;0.000124)|Breast(139;0.0199)|Prostate(109;0.0233)|Lung SC(185;0.0367)		all cancers(112;6.03e-09)|Epithelial(112;7e-07)|OV - Ovarian serous cystadenocarcinoma(117;0.00015)|BRCA - Breast invasive adenocarcinoma(63;0.00438)|GBM - Glioblastoma multiforme(144;0.0168)		ATTAGATGCTCGTCAAGCTGA	0.358													4	40					0	0	0.00024832	0	0
FOXO1	2308	broad.mit.edu	37	13	41134563	41134563	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:41134563C>G	uc001uxl.3	-	2	1450	c.1065G>C	c.(1063-1065)ATG>ATC	p.M355I	FOXO1_uc010acc.1_Missense_Mutation_p.M170I	NM_002015	NP_002006	Q12778	FOXO1_HUMAN	forkhead box O1	355					anti-apoptosis|blood vessel development|embryo development|endocrine pancreas development|insulin receptor signaling pathway|negative regulation of stress-activated MAPK cascade|nerve growth factor receptor signaling pathway|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|response to DNA damage stimulus|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding		PAX3/FOXO1(749)|PAX7/FOXO1(197)	soft_tissue(946)|lung(1)|central_nervous_system(1)	948		Lung NSC(96;1.18e-05)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;7.32e-09)|Epithelial(112;2.87e-06)|OV - Ovarian serous cystadenocarcinoma(117;6.98e-05)|GBM - Glioblastoma multiforme(144;0.00394)|BRCA - Breast invasive adenocarcinoma(63;0.0815)		AAGTAGAGGCCATCTTTGCGG	0.448													4	184					0	0	0.00024832	0	0
WBP4	11193	broad.mit.edu	37	13	41646982	41646982	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:41646982C>A	uc001uxt.2	+	7	664	c.551C>A	c.(550-552)ACA>AAA	p.T184K	WBP4_uc010tfd.1_Missense_Mutation_p.T163K	NM_007187	NP_009118	O75554	WBP4_HUMAN	WW domain-containing binding protein 4	184	WW 2.				nuclear mRNA cis splicing, via spliceosome	nuclear speck|spliceosomal complex	nucleic acid binding|proline-rich region binding|zinc ion binding			breast(2)|kidney(1)	3		Lung NSC(96;3.55e-06)|Breast(139;0.00123)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		all cancers(112;3.11e-09)|Epithelial(112;3.37e-06)|OV - Ovarian serous cystadenocarcinoma(117;8.3e-05)|GBM - Glioblastoma multiforme(144;0.00102)|BRCA - Breast invasive adenocarcinoma(63;0.07)		TACTATAATACAGAAACAGGA	0.353													5	109					0.000157383	0.00173811	0.000157383	1	0
ZC3H13	23091	broad.mit.edu	37	13	46594628	46594628	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:46594628G>C	uc010tfw.1	-	4	410	c.404C>G	c.(403-405)CCA>CGA	p.P135R	ZC3H13_uc001vas.1_Missense_Mutation_p.P135R|ZC3H13_uc001vat.1_Missense_Mutation_p.P135R	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	135							nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		TTCACTTTCTGGAGTTCTTTC	0.318													4	98					0	0	3.59834e-05	0	0
LRCH1	23143	broad.mit.edu	37	13	47269133	47269134	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:47269133_47269134CG>AT	uc001vbj.2	+	9	1462_1463	c.1226_1227CG>AT	c.(1225-1227)TCG>TAT	p.S409Y	LRCH1_uc010acp.2_Missense_Mutation_p.S409Y|LRCH1_uc001vbk.2_Missense_Mutation_p.S409Y|LRCH1_uc001vbl.3_Missense_Mutation_p.S409Y	NM_015116	NP_055931	Q9Y2L9	LRCH1_HUMAN	leucine-rich repeats and calponin homology (CH)	409										ovary(1)|central_nervous_system(1)	2		all_lung(13;5.61e-07)|Lung NSC(96;0.000117)|Breast(56;0.000141)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000123)		GGTCTCCATTCGGAATTTATGA	0.401													6	122					0	0	6.4e-05	0	0
LRCH1	23143	broad.mit.edu	37	13	47279226	47279226	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:47279226G>C	uc001vbj.2	+	12	1660	c.1424G>C	c.(1423-1425)AGA>ACA	p.R475T	LRCH1_uc010acp.2_Missense_Mutation_p.R475T|LRCH1_uc001vbk.2_Missense_Mutation_p.R475T|LRCH1_uc001vbl.3_Missense_Mutation_p.R475T	NM_015116	NP_055931	Q9Y2L9	LRCH1_HUMAN	leucine-rich repeats and calponin homology (CH)	475										ovary(1)|central_nervous_system(1)	2		all_lung(13;5.61e-07)|Lung NSC(96;0.000117)|Breast(56;0.000141)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000123)		ATTACAGAGAGAAGTGTTTTA	0.284													4	146					0	0	0.00024832	0	0
RB1	5925	broad.mit.edu	37	13	48934244	48934244	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:48934244G>C	uc001vcb.2	+	7	865	c.699G>C	c.(697-699)ATG>ATC	p.M233I	RB1_uc010acs.1_RNA|RB1_uc010act.1_5'UTR	NM_000321	NP_000312	P06400	RB_HUMAN	retinoblastoma 1	233					androgen receptor signaling pathway|cell cycle arrest|chromatin remodeling|G1 phase of mitotic cell cycle|interspecies interaction between organisms|maintenance of mitotic sister chromatid cohesion|mitotic cell cycle G1/S transition checkpoint|myoblast differentiation|negative regulation of cell growth|negative regulation of protein kinase activity|negative regulation of S phase of mitotic cell cycle|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of mitotic metaphase/anaphase transition|protein localization to chromosome, centromeric region|Ras protein signal transduction|regulation of centromere complex assembly|regulation of cohesin localization to chromatin|regulation of lipid kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|sister chromatid biorientation	chromatin|PML body|Rb-E2F complex|SWI/SNF complex	androgen receptor binding|DNA binding|kinase binding|phosphoprotein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding|ubiquitin protein ligase binding	p.?(5)		lung(94)|eye(89)|central_nervous_system(47)|bone(22)|breast(21)|urinary_tract(17)|haematopoietic_and_lymphoid_tissue(14)|ovary(10)|prostate(9)|soft_tissue(8)|skin(7)|endometrium(5)|cervix(3)|liver(3)|salivary_gland(2)|stomach(2)|oesophagus(1)|adrenal_gland(1)|kidney(1)|gastrointestinal_tract_(site_indeterminate)(1)|pituitary(1)	358		all_cancers(8;6.9e-71)|all_epithelial(8;4.61e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;1.51e-09)|Lung NSC(96;7.03e-07)|Breast(56;1.53e-05)|Prostate(109;0.000493)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(2;9.98e-18)|LUSC - Lung squamous cell carcinoma(3;0.013)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CACCTCCCATGTTGCTCAAAG	0.249		6	D|Mis|N|F|S		retinoblastoma|sarcoma|breast|small cell lung	retinoblastoma|sarcoma|breast|small cell lung			Hereditary_Retinoblastoma	TCGA GBM(7;6.82e-08)|TSP Lung(12;0.097)|TCGA Ovarian(6;0.080)			3	86					0	0	0.00024832	0	0
NEK5	341676	broad.mit.edu	37	13	52639571	52639571	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:52639571G>C	uc001vge.2	-	22	2239	c.2099C>G	c.(2098-2100)CCG>CGG	p.P700R		NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5	700							ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		TGGGCTGTACGGGTCCTTGGT	0.502													5	108					0	0	0.000274275	0	0
OLFM4	10562	broad.mit.edu	37	13	53624143	53624143	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:53624143C>G	uc001vhl.2	+	5	770	c.770C>G	c.(769-771)CCG>CGG	p.P257R	OLFM4_uc001vhk.1_Intron	NM_006418	NP_006409	Q6UX06	OLFM4_HUMAN	olfactomedin 4 precursor	257	Olfactomedin-like.				cell adhesion	extracellular space				skin(1)	1		Breast(56;0.000776)|Lung NSC(96;0.000814)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.13e-08)		ATCAGCAAACCGTCTGTGGTT	0.433													6	116					0	0	0.000157383	0	0
PCDH17	27253	broad.mit.edu	37	13	58207007	58207007	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:58207007C>T	uc001vhq.1	+	1	1219	c.327C>T	c.(325-327)TTC>TTT	p.F109F	PCDH17_uc010aec.1_Silent_p.F109F	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	109	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		TCGAGGTGTTCGCCAACGACA	0.592													7	54					0	0	8.12818e-05	0	0
DIAPH3	81624	broad.mit.edu	37	13	60582691	60582691	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:60582691G>T	uc001vht.2	-	9	1220	c.1001C>A	c.(1000-1002)TCA>TAA	p.S334*	DIAPH3_uc001vhu.2_Nonsense_Mutation_p.S71*|DIAPH3_uc001vhw.1_Nonsense_Mutation_p.S323*|DIAPH3_uc010aed.1_Nonsense_Mutation_p.S288*|DIAPH3_uc010aee.1_Nonsense_Mutation_p.S264*	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	334	GBD/FH3.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		CAGTTGAACTGAATTGTGCCG	0.308													9	167					0.000274275	0.00290969	0.000274275	1	0
PCDH20	64881	broad.mit.edu	37	13	61985742	61985742	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:61985742G>C	uc001vid.3	-	2	2854	c.2490C>G	c.(2488-2490)CCC>CCG	p.P830P	PCDH20_uc010thj.1_Silent_p.P830P	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	803	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		GGAGAGGCTCGGGATAACCAT	0.428													4	110					0	0	0.00024832	0	0
PCDH9	5101	broad.mit.edu	37	13	67800011	67800011	+	Silent	SNP	G	T	T	rs145370598	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:67800011G>T	uc001vik.2	-	2	3254	c.2562C>A	c.(2560-2562)GCC>GCA	p.A854A	PCDH9_uc001vil.2_Silent_p.A854A|PCDH9_uc010thl.1_Silent_p.A854A|PCDH9_uc001vin.3_Silent_p.A854A	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	854	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		ACATCCATTCGGCACCTTGCT	0.473													7	144					0.000673444	0.00655963	0.000673444	1	0
MYCBP2	23077	broad.mit.edu	37	13	77742671	77742671	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:77742671G>T	uc001vkf.2	-	41	5983	c.5892C>A	c.(5890-5892)ACC>ACA	p.T1964T	MYCBP2_uc010aev.2_Silent_p.T1368T	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	1964					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GGTTTCCTGTGGTGCTATCTG	0.498													8	104					1.06961e-07	1.39386e-06	0.000157383	1	0
MYCBP2	23077	broad.mit.edu	37	13	77835375	77835375	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:77835375G>A	uc001vkf.2	-	13	1760	c.1669C>T	c.(1669-1671)CTT>TTT	p.L557F	MYCBP2_uc010aev.2_5'UTR	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	557					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GCAACTAAAAGGGCGTGAGAG	0.408													12	86					0	0	0.00010058	0	0
RNF219	79596	broad.mit.edu	37	13	79213015	79213015	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:79213015G>T	uc001vkw.1	-	4	551	c.492C>A	c.(490-492)CTC>CTA	p.L164L	RNF219_uc010afb.1_5'UTR|RNF219_uc010afc.2_Silent_p.L164L	NM_024546	NP_078822	Q5W0B1	RN219_HUMAN	ring finger protein 219	164	Potential.						zinc ion binding			large_intestine(2)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.0414)		TAGCTGTTCTGAGTTTTTTCT	0.333													8	192					4.68919e-08	6.14536e-07	0.000673444	1	0
UGGT2	55757	broad.mit.edu	37	13	96579527	96579527	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:96579527G>C	uc001vmt.2	-	18	2211	c.2041C>G	c.(2041-2043)CGT>GGT	p.R681G		NM_020121	NP_064506	Q9NYU1	UGGG2_HUMAN	UDP-glucose ceramide glucosyltransferase-like 2	681					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity			ovary(2)|central_nervous_system(1)	3						GTATTTATACGGGGTACAACA	0.303													5	167					0	0	0.000602214	0	0
UGGT2	55757	broad.mit.edu	37	13	96622510	96622510	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:96622510C>A	uc001vmt.2	-	12	1361	c.1191G>T	c.(1189-1191)TTG>TTT	p.L397F		NM_020121	NP_064506	Q9NYU1	UGGG2_HUMAN	UDP-glucose ceramide glucosyltransferase-like 2	397					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity			ovary(2)|central_nervous_system(1)	3						TCAGCATATCCAAAATACTAT	0.259													14	351					0.000422831	0.00445499	0.000422831	1	0
STK24	8428	broad.mit.edu	37	13	99171521	99171521	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:99171521G>T	uc001vnm.1	-	2	520	c.285C>A	c.(283-285)ACC>ACA	p.T95T	STK24_uc001vnn.1_Silent_p.T83T|STK24_uc010tim.1_Silent_p.T83T	NM_003576	NP_003567	Q9Y6E0	STK24_HUMAN	serine/threonine kinase 24 isoform a	95	Protein kinase.				cellular component disassembly involved in apoptosis|signal transduction	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)|lung(1)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			CATAATATTTGGTTACATATG	0.438													8	196					0.000274275	0.00290969	0.000274275	1	0
SLC15A1	6564	broad.mit.edu	37	13	99340520	99340520	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:99340520G>C	uc001vno.2	-	20	1742	c.1665C>G	c.(1663-1665)ACC>ACG	p.T555T		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	555	Extracellular (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	GGACTATATAGGTATAAGCAC	0.348													4	109					0	0	0.00024832	0	0
SLC15A1	6564	broad.mit.edu	37	13	99373814	99373814	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:99373814G>A	uc001vno.2	-	7	568	c.491C>T	c.(490-492)TCC>TTC	p.S164F	SLC15A1_uc001vnp.1_Missense_Mutation_p.S132F	NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	164	Helical; (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	GTAAAAGATGGAAAAAAATCT	0.393													11	39					0	0	0.000978159	0	0
GPR18	2841	broad.mit.edu	37	13	99907513	99907513	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:99907513C>G	uc001voe.3	-	3	1115	c.614G>C	c.(613-615)GGG>GCG	p.G205A	UBAC2_uc001voa.3_Intron|UBAC2_uc010tiu.1_Intron|UBAC2_uc001vob.3_Intron|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Intron|UBAC2_uc001voc.2_Intron|UBAC2_uc010tiw.1_Intron|GPR18_uc010afv.2_Missense_Mutation_p.G205A	NM_005292	NP_005283	Q14330	GPR18_HUMAN	G protein-coupled receptor 18	205	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Glycine(DB00145)	CAAGTAGCACCCAATCATGAT	0.423													4	108					0	0	0.00024832	0	0
TM9SF2	9375	broad.mit.edu	37	13	100193024	100193024	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:100193024T>C	uc001voj.1	+	8	1018	c.885T>C	c.(883-885)CCT>CCC	p.P295P	TM9SF2_uc010afz.1_Silent_p.P130P	NM_004800	NP_004791	Q99805	TM9S2_HUMAN	transmembrane 9 superfamily member 2 precursor	295	Lumenal (Potential).				transport	endosome membrane|integral to plasma membrane				ovary(1)	1	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.218)					AGTCTATGCCTCATACCCACA	0.398													3	108					0	0	6.4e-05	0	0
TMTC4	84899	broad.mit.edu	37	13	101315391	101315391	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:101315391G>A	uc001vou.2	-	4	482	c.322C>T	c.(322-324)CAC>TAC	p.H108Y	TMTC4_uc001vot.2_Missense_Mutation_p.H127Y|TMTC4_uc010tja.1_Intron	NM_001079669	NP_001073137	Q5T4D3	TMTC4_HUMAN	transmembrane and tetratricopeptide repeat	108						integral to membrane	binding			ovary(2)|breast(1)	3	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TTGACCACGTGAAAGCCCACG	0.577													15	55					0	0	0.000566183	0	0
NALCN	259232	broad.mit.edu	37	13	101890219	101890219	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:101890219C>T	uc001vox.1	-	12	1510	c.1321G>A	c.(1321-1323)GGA>AGA	p.G441R	NALCN_uc001voy.2_Missense_Mutation_p.G156R|NALCN_uc001voz.2_Missense_Mutation_p.G441R|NALCN_uc001vpa.2_Missense_Mutation_p.G441R	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	441	Helical; Name=S2 of repeat II; (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CCAGTAAATCCCAAACACCAT	0.328													5	134					0	0	0.000602214	0	0
LIG4	3981	broad.mit.edu	37	13	108862203	108862203	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:108862203C>T	uc001vqn.2	-	2	1687	c.1414G>A	c.(1414-1416)GGT>AGT	p.G472S	LIG4_uc001vqo.2_Missense_Mutation_p.G472S|LIG4_uc010agg.1_Missense_Mutation_p.G405S|LIG4_uc010agf.2_Missense_Mutation_p.G472S|LIG4_uc001vqp.2_Missense_Mutation_p.G472S	NM_002312	NP_002303	P49917	DNLI4_HUMAN	DNA ligase IV	472					cell cycle|cell division|cell proliferation|central nervous system development|chromosome organization|DNA ligation involved in DNA recombination|DNA ligation involved in DNA repair|DNA replication|double-strand break repair via nonhomologous end joining|in utero embryonic development|initiation of viral infection|isotype switching|negative regulation of neuron apoptosis|neuron apoptosis|nucleotide-excision repair, DNA gap filling|positive regulation of fibroblast proliferation|positive regulation of neurogenesis|pro-B cell differentiation|provirus integration|response to gamma radiation|response to X-ray|single strand break repair|somatic stem cell maintenance|T cell differentiation in thymus|T cell receptor V(D)J recombination	condensed chromosome|cytoplasm|DNA ligase IV complex|DNA-dependent protein kinase-DNA ligase 4 complex|focal adhesion|nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding|protein C-terminus binding				0	all_lung(23;0.000238)|all_neural(89;0.00256)|Lung NSC(43;0.0056)|Medulloblastoma(90;0.00596)|Lung SC(71;0.104)					GATCCTTTACCCCAATATCCT	0.443								NHEJ					6	281					0	0	0.000442599	0	0
C13orf16	121793	broad.mit.edu	37	13	111996452	111996452	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:111996452C>G	uc001vsa.2	+	6	567	c.438C>G	c.(436-438)GCC>GCG	p.A146A		NM_152324	NP_689537	Q8N6K0	CM016_HUMAN	hypothetical protein LOC121793	146	Cytoplasmic (Potential).					integral to membrane					0	all_lung(23;3.96e-05)|Lung NSC(43;0.00156)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)		all cancers(43;0.113)|GBM - Glioblastoma multiforme(44;0.174)|BRCA - Breast invasive adenocarcinoma(86;0.188)			TAACAGAAGCCGAAGAAACTG	0.383													4	115					0	0	0.00024832	0	0
TUBGCP3	10426	broad.mit.edu	37	13	113158471	113158471	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr13:113158471C>A	uc001vse.1	-	19	2369	c.2182G>T	c.(2182-2184)GAA>TAA	p.E728*	TUBGCP3_uc010tjq.1_Nonsense_Mutation_p.E718*|TUBGCP3_uc001vsf.2_Nonsense_Mutation_p.E728*	NM_006322	NP_006313	Q96CW5	GCP3_HUMAN	tubulin, gamma complex associated protein 3	728					G2/M transition of mitotic cell cycle|microtubule nucleation|single fertilization	centriole|cytosol|polar microtubule	gamma-tubulin binding|structural constituent of cytoskeleton			central_nervous_system(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)					CAAGAACATTCAAGCACCTGG	0.413													7	115					0.000442599	0.00445669	0.000442599	1	0
P704P	641455	broad.mit.edu	37	14	20020012	20020012	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:20020012G>C	uc001vwc.3	-	1	261	c.209C>G	c.(208-210)CCC>CGC	p.P70R	P704P_uc001vwb.3_RNA	NM_001145442	NP_001138914	A6NI47	POTEM_HUMAN	prostate-specific P704P	70											0						CCTGCACCAGGGGAAGCAGTG	0.592													5	397					0	0	8.12818e-05	0	0
OR4N2	390429	broad.mit.edu	37	14	20296074	20296074	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:20296074C>T	uc010tkv.1	+	1	467	c.467C>T	c.(466-468)TCC>TTC	p.S156F		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTTGTCCACTCCATTATCCAG	0.532													11	152					0	0	0.00010058	0	0
OR4K5	79317	broad.mit.edu	37	14	20389635	20389635	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:20389635G>A	uc010tkw.1	+	1	870	c.870G>A	c.(868-870)AGG>AGA	p.R290R		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	290	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATACACTAAGGAATAGGGATA	0.398													14	154					0	0	0.000958276	0	0
PARP2	10038	broad.mit.edu	37	14	20823075	20823075	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:20823075G>T	uc001vxc.2	+	9	938	c.910G>T	c.(910-912)GAA>TAA	p.E304*	PARP2_uc001vxd.2_Nonsense_Mutation_p.E291*|PARP2_uc001vxb.1_Nonsense_Mutation_p.E304*|PARP2_uc010tle.1_Nonsense_Mutation_p.E54*	NM_005484	NP_005475	Q9UGN5	PARP2_HUMAN	poly (ADP-ribose) polymerase family, member 2	304	PARP alpha-helical.				protein ADP-ribosylation	nucleolus|nucleoplasm	DNA binding|NAD+ ADP-ribosyltransferase activity			ovary(1)|pancreas(1)	2	all_cancers(95;0.00092)	all_lung(585;0.235)	Epithelial(56;5.34e-07)|all cancers(55;3.7e-06)	GBM - Glioblastoma multiforme(265;0.00888)|READ - Rectum adenocarcinoma(17;0.0649)		AGCATGCAATGAATTCTACAC	0.473								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					8	143					0.000274275	0.00290969	0.000274275	1	0
PARP2	10038	broad.mit.edu	37	14	20825913	20825913	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:20825913G>C	uc001vxc.2	+	16	1737	c.1709G>C	c.(1708-1710)CGG>CCG	p.R570P	PARP2_uc001vxd.2_Missense_Mutation_p.R557P|PARP2_uc001vxb.1_3'UTR	NM_005484	NP_005475	Q9UGN5	PARP2_HUMAN	poly (ADP-ribose) polymerase family, member 2	570	PARP catalytic.				protein ADP-ribosylation	nucleolus|nucleoplasm	DNA binding|NAD+ ADP-ribosyltransferase activity			ovary(1)|pancreas(1)	2	all_cancers(95;0.00092)	all_lung(585;0.235)	Epithelial(56;5.34e-07)|all cancers(55;3.7e-06)	GBM - Glioblastoma multiforme(265;0.00888)|READ - Rectum adenocarcinoma(17;0.0649)		GTCCGTATGCGGTACCTTTTA	0.378								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					4	102					0	0	3.59834e-05	0	0
RNASE11	122651	broad.mit.edu	37	14	21052515	21052515	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:21052515G>T	uc010ahv.2	-	2	304	c.119C>A	c.(118-120)GCA>GAA	p.A40E	RNASE11_uc010ahx.2_Missense_Mutation_p.A40E|RNASE11_uc010ahw.2_Missense_Mutation_p.A40E|RNASE11_uc001vxs.2_Missense_Mutation_p.A40E	NM_145250	NP_660293	Q8TAA1	RNS11_HUMAN	ribonuclease, RNase A family, 11 (non-active)	40						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(3)	3	all_cancers(95;0.00238)	all_lung(585;0.235)	Epithelial(56;1.85e-06)|all cancers(55;1.46e-05)	GBM - Glioblastoma multiforme(265;0.0139)		GCCACTTTTTGCCATGTCATA	0.413													7	266					0.000978159	0.00917326	0.000978159	1	0
OXA1L	5018	broad.mit.edu	37	14	23237349	23237349	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:23237349G>C	uc001wgn.2	+	3	588	c.588G>C	c.(586-588)CTG>CTC	p.L196L	OXA1L_uc010tnc.1_Silent_p.L196L|OXA1L_uc001wgo.2_RNA|OXA1L_uc010akc.2_Silent_p.L196L|OXA1L_uc001wgp.2_Silent_p.L120L|OXA1L_uc001wgq.2_5'UTR	NM_005015	NP_005006	Q15070	OXA1L_HUMAN	oxidase (cytochrome c) assembly 1-like	136	Mitochondrial matrix (Potential).				aerobic respiration|mitochondrial proton-transporting ATP synthase complex assembly|mitochondrial respiratory chain complex I assembly|negative regulation of ATPase activity|negative regulation of oxidoreductase activity|protein insertion into membrane|protein tetramerization	integral to mitochondrial membrane|mitochondrial respiratory chain|protein complex	protein homodimerization activity|ribosome binding			central_nervous_system(1)	1	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.0096)		ATGTTGATCTGGGCCTACCTT	0.493													3	58					0	0	6.4e-05	0	0
REM2	161253	broad.mit.edu	37	14	23355255	23355255	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:23355255G>C	uc001whf.1	+	4	607	c.542G>C	c.(541-543)CGG>CCG	p.R181P	REM2_uc010tnd.1_Silent_p.A148A	NM_173527	NP_775798	Q8IYK8	REM2_HUMAN	rad and gem related GTP binding protein 2	181					regulation of transcription, DNA-dependent|small GTPase mediated signal transduction	intracellular|plasma membrane	ATP binding|GTP binding|transcription factor binding			large_intestine(1)|central_nervous_system(1)	2	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.012)		GGGTGGCTGCGGGACCACTGC	0.428													3	59					0	0	0.000602214	0	0
MYH6	4624	broad.mit.edu	37	14	23871732	23871732	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:23871732C>A	uc001wjv.2	-	12	1149	c.1082G>T	c.(1081-1083)GGG>GTG	p.G361V	MYH6_uc010akp.1_Missense_Mutation_p.G361V	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	361	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CTTCATGTTCCCGTAGTGCAT	0.612													7	145					3.86212e-05	0.000457303	0.000673444	1	0
LRRC16B	90668	broad.mit.edu	37	14	24523675	24523675	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:24523675C>A	uc001wlj.2	+	5	474	c.317C>A	c.(316-318)ACA>AAA	p.T106K		NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	106										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		GACCAGGTGACACGACATGTG	0.577													6	69					3.59834e-05	0.000429	3.59834e-05	1	0
TM9SF1	10548	broad.mit.edu	37	14	24663940	24663940	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:24663940G>C	uc001wnb.1	-	2	634	c.286C>G	c.(286-288)CGC>GGC	p.R96G	TM9SF1_uc010toa.1_Missense_Mutation_p.R9G|TM9SF1_uc001wna.1_RNA|TM9SF1_uc010tob.1_Missense_Mutation_p.R331G|TM9SF1_uc001wnc.2_Missense_Mutation_p.R96G|TM9SF1_uc001wnd.2_5'Flank	NM_006405	NP_006396	O15321	TM9S1_HUMAN	transmembrane 9 superfamily member 1 isoform a	96					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)	1				GBM - Glioblastoma multiforme(265;0.0183)		TCCCGAAAGCGGATCTCATAC	0.532													4	239					0	0	0.000602214	0	0
TSSK4	283629	broad.mit.edu	37	14	24676586	24676586	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:24676586G>C	uc001wng.2	+	3	843	c.675G>C	c.(673-675)ATG>ATC	p.M225I	TM9SF1_uc010tob.1_Intron|TSSK4_uc001wne.2_Missense_Mutation_p.M149I|TSSK4_uc001wnf.2_Missense_Mutation_p.M155I|TSSK4_uc001wnh.2_Missense_Mutation_p.M235I	NM_174944	NP_777604	Q6SA08	TSSK4_HUMAN	testis-specific serine kinase 4	225	Protein kinase.				cell differentiation|multicellular organismal development|positive regulation of CREB transcription factor activity|spermatogenesis		ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity				0				GBM - Glioblastoma multiforme(265;0.018)		CCTGGAGCATGGGCGTCATCC	0.527													4	102					0	0	0.000602214	0	0
LTB4R2	56413	broad.mit.edu	37	14	24780780	24780780	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:24780780C>T	uc001woq.1	+	1	2620	c.1003C>T	c.(1003-1005)CTC>TTC	p.L335F	CIDEB_uc001woo.2_5'Flank|CIDEB_uc001wop.2_5'Flank|LTB4R2_uc010alo.2_Missense_Mutation_p.L304F|LTB4R2_uc001wor.2_Missense_Mutation_p.L304F|LTB4R_uc001wos.2_5'UTR|LTB4R_uc010alp.2_5'Flank	NM_019839	NP_062813	Q9NPC1	LT4R2_HUMAN	leukotriene B4 receptor 2	335	Cytoplasmic (Potential).				chemotaxis|negative regulation of adenylate cyclase activity	integral to plasma membrane					0				GBM - Glioblastoma multiforme(265;0.018)		TCCCCGTTTCCTCACGCGGCT	0.647													4	53					0	0	3.59834e-05	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884894	24884894	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:24884894G>C	uc001wpf.3	+	9	4257	c.3939G>C	c.(3937-3939)TCG>TCC	p.S1313S		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1313					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						TCCACATGTCGGGCTACTGCT	0.607													4	218					0	0	0.000157383	0	0
PRKD1	5587	broad.mit.edu	37	14	30098286	30098286	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:30098286C>A	uc001wqh.2	-	11	1867	c.1686G>T	c.(1684-1686)GTG>GTT	p.V562V		NM_002742	NP_002733	Q15139	KPCD1_HUMAN	protein kinase D1	562					cell proliferation|intracellular signal transduction|sphingolipid metabolic process	cytosol|integral to plasma membrane	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(3)|large_intestine(2)|ovary(2)|skin(1)	8	Hepatocellular(127;0.0604)		LUAD - Lung adenocarcinoma(48;0.00527)|Lung(238;0.0252)	GBM - Glioblastoma multiforme(265;0.00888)		CTGAAATACTCACAGAGATAT	0.313													7	138					0.000274275	0.00290969	0.000274275	1	0
G2E3	55632	broad.mit.edu	37	14	31066625	31066625	+	Splice_Site	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:31066625G>T	uc001wqk.2	+	7	683	c.529_splice	c.e7-1	p.V177_splice	G2E3_uc010tpe.1_Splice_Site_p.V131_splice|G2E3_uc010tpf.1_Splice_Site_p.V131_splice	NM_017769	NP_060239	Q7L622	G2E3_HUMAN	G2/M-phase specific E3 ubiquitin ligase						apoptosis|multicellular organismal development|protein modification process	Golgi apparatus|nucleolus	acid-amino acid ligase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						TTCCACTGTAGGTTCAAGCAA	0.294													10	240					3.07112e-06	3.84493e-05	0.000978159	1	0
STRN3	29966	broad.mit.edu	37	14	31420082	31420082	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:31420082G>C	uc001wqu.2	-	4	745	c.529C>G	c.(529-531)CAG>GAG	p.Q177E	STRN3_uc001wqv.2_Missense_Mutation_p.Q177E|STRN3_uc010tpj.1_RNA	NM_001083893	NP_001077362	Q13033	STRN3_HUMAN	nuclear autoantigen isoform 1	177	Calmodulin-binding (Potential).				negative regulation of estrogen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|response to estradiol stimulus	cytoplasm|dendrite|Golgi apparatus|neuronal cell body|nucleoplasm|nucleus|plasma membrane|protein complex	armadillo repeat domain binding|calmodulin binding|protein complex binding|protein phosphatase 2A binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(127;0.0877)|Breast(36;0.148)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)|BRCA - Breast invasive adenocarcinoma(188;0.0805)	GBM - Glioblastoma multiforme(265;0.0124)		CTTAAAAGCTGTCTGCCTTGC	0.338													6	158					0	0	3.59834e-05	0	0
HECTD1	25831	broad.mit.edu	37	14	31638563	31638563	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:31638563G>A	uc001wrc.1	-	9	1933	c.1444C>T	c.(1444-1446)CCA>TCA	p.P482S	HECTD1_uc001wrd.1_5'Flank	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	482	ANK 3.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		CTCTCACCTGGAGACTGAAGA	0.393													15	98					0	0	0.00074312	0	0
BAZ1A	11177	broad.mit.edu	37	14	35231347	35231347	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:35231347G>C	uc001wsk.2	-	24	4427	c.3859C>G	c.(3859-3861)CAA>GAA	p.Q1287E	BAZ1A_uc001wsl.2_Missense_Mutation_p.Q1255E	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	1287					chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		TCTTGTTGTTGGCCACGACTT	0.408													4	139					0	0	0.000157383	0	0
BAZ1A	11177	broad.mit.edu	37	14	35270308	35270308	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:35270308T>C	uc001wsk.2	-	8	1521	c.953A>G	c.(952-954)AAG>AGG	p.K318R	BAZ1A_uc001wsl.2_Missense_Mutation_p.K318R|BAZ1A_uc001wsm.1_Missense_Mutation_p.K318R	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	318	Potential.				chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		ACCCAGTGACTTCATTTCTTC	0.353													11	88					0	0	0.000978159	0	0
SSTR1	6751	broad.mit.edu	37	14	38679025	38679025	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:38679025G>A	uc001wul.1	+	3	1048	c.431G>A	c.(430-432)AGC>AAC	p.S144N	SSTR1_uc010amu.1_Intron	NM_001049	NP_001040	P30872	SSR1_HUMAN	somatostatin receptor 1	144	Helical; Name=3; (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	somatostatin receptor activity			central_nervous_system(3)|ovary(1)|lung(1)	5	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00444)	Octreotide(DB00104)	ATGTTCACCAGCATCTACTGT	0.647													30	114					0	0	0.000184323	0	0
SEC23A	10484	broad.mit.edu	37	14	39532568	39532568	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:39532568G>C	uc001wup.1	-	12	1581	c.1358C>G	c.(1357-1359)CCC>CGC	p.P453R	SEC23A_uc010tqa.1_Missense_Mutation_p.P315R|SEC23A_uc010tqb.1_Missense_Mutation_p.P424R|SEC23A_uc010tqc.1_Missense_Mutation_p.P315R	NM_006364	NP_006355	Q15436	SC23A_HUMAN	SEC23-related protein A	453					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|Golgi membrane|smooth endoplasmic reticulum membrane	protein binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5	Hepatocellular(127;0.213)		Lung(238;0.00047)|LUAD - Lung adenocarcinoma(48;0.000565)	GBM - Glioblastoma multiforme(112;0.0151)		GGTTGTAGTGGGACTAAGTCC	0.343													4	74					0	0	3.59834e-05	0	0
SEC23A	10484	broad.mit.edu	37	14	39543631	39543631	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:39543631G>C	uc001wup.1	-	9	1314	c.1091C>G	c.(1090-1092)CCC>CGC	p.P364R	SEC23A_uc010tqa.1_Missense_Mutation_p.P226R|SEC23A_uc010tqb.1_Missense_Mutation_p.P335R|SEC23A_uc010tqc.1_Missense_Mutation_p.P226R	NM_006364	NP_006355	Q15436	SC23A_HUMAN	SEC23-related protein A	364					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|Golgi membrane|smooth endoplasmic reticulum membrane	protein binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5	Hepatocellular(127;0.213)		Lung(238;0.00047)|LUAD - Lung adenocarcinoma(48;0.000565)	GBM - Glioblastoma multiforme(112;0.0151)		AGTAAGGTTGGGACAGCATTT	0.353													4	203					0	0	8.12818e-05	0	0
LRFN5	145581	broad.mit.edu	37	14	42360868	42360868	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:42360868C>G	uc001wvm.2	+	4	2999	c.1801C>G	c.(1801-1803)CAG>GAG	p.Q601E	LRFN5_uc010ana.2_Intron	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	601	Cytoplasmic (Potential).					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		AGAGAATGCCCAGTGTTGTAA	0.483										HNSCC(30;0.082)			4	79					0	0	0.000157383	0	0
RPL36AL	6166	broad.mit.edu	37	14	50085510	50085510	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:50085510G>T	uc001wwq.1	-	2	419	c.313C>A	c.(313-315)CAG>AAG	p.Q105K	SDCCAG1_uc010anj.1_Intron|MGAT2_uc001wwr.2_5'Flank	NM_001001	NP_000992	Q969Q0	RL36L_HUMAN	ribosomal protein L36a-like protein	105					translation	ribosome	structural constituent of ribosome				0	all_epithelial(31;0.0021)|Breast(41;0.0124)					GTTTAGAACTGGATCACTTGG	0.393													8	182					0.00010058	0.00115734	0.00010058	1	0
POLE2	5427	broad.mit.edu	37	14	50122428	50122429	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:50122428_50122429GG>TT	uc001wwu.2	-	11	902_903	c.888_889CC>AA	c.(886-891)GACCAG>GAAAAG	p.296_297DQ>EK	SDCCAG1_uc010anj.1_Intron|POLE2_uc010ann.2_Missense_Mutation_p.11_12DQ>EK|POLE2_uc001wwv.2_RNA|POLE2_uc010ano.2_Missense_Mutation_p.11_12DQ>EK	NM_002692	NP_002683	P56282	DPOE2_HUMAN	DNA-directed DNA polymerase epsilon 2	296_297					DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	DNA binding|DNA-directed DNA polymerase activity			ovary(1)|skin(1)	2	all_epithelial(31;0.0021)|Breast(41;0.0124)					ACTTCCACCTGGTCCAACCAAA	0.337													13	420					0	0	6.4e-05	0	0
SOS2	6655	broad.mit.edu	37	14	50625319	50625319	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:50625319C>A	uc001wxs.3	-	11	1996	c.1898G>T	c.(1897-1899)TGT>TTT	p.C633F	SOS2_uc010tql.1_Missense_Mutation_p.C600F|SOS2_uc010tqm.1_RNA|SOS2_uc001wxt.2_Missense_Mutation_p.C321F	NM_006939	NP_008870	Q07890	SOS2_HUMAN	son of sevenless homolog 2	633	N-terminal Ras-GEF.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	DNA binding|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2	all_epithelial(31;0.000822)|Breast(41;0.0065)					CTGTGGTTTACAAAATGAACG	0.289													6	187					7.48243e-07	9.56199e-06	0.000442599	1	0
ATL1	51062	broad.mit.edu	37	14	51058270	51058270	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:51058270G>C	uc001wyf.3	+	4	676	c.435G>C	c.(433-435)ATG>ATC	p.M145I	ATL1_uc001wyd.3_Missense_Mutation_p.M145I|ATL1_uc001wye.3_Missense_Mutation_p.M145I	NM_015915	NP_056999	Q8WXF7	ATLA1_HUMAN	atlastin GTPase 1 isoform a	145	Cytoplasmic.				axonogenesis|cell death|endoplasmic reticulum organization|protein homooligomerization	axon|endoplasmic reticulum membrane|Golgi cis cisterna|Golgi membrane|integral to membrane|microsome	GTP binding|GTPase activity|identical protein binding			skin(3)|central_nervous_system(1)	4						TGTTATTGATGGATACTCAGG	0.353													4	80					0	0	3.59834e-05	0	0
NIN	51199	broad.mit.edu	37	14	51243741	51243741	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:51243741G>C	uc001wym.2	-	7	783	c.592C>G	c.(592-594)CGT>GGT	p.R198G	NIN_uc001wyi.2_Missense_Mutation_p.R198G|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Missense_Mutation_p.R198G|NIN_uc010tqp.1_Missense_Mutation_p.R204G|NIN_uc001wyo.2_Missense_Mutation_p.R198G|NIN_uc001wyp.1_Missense_Mutation_p.R160G	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	198	EF-hand 3.				centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					TGACCATCACGGGTGATCCCC	0.478			T	PDGFRB	MPD								5	85					0	0	8.12818e-05	0	0
C14orf166	51637	broad.mit.edu	37	14	52460481	52460481	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:52460481G>C	uc010aod.2	+	3	357	c.227G>C	c.(226-228)CGA>CCA	p.R76P		NM_016039	NP_057123	Q9Y224	CN166_HUMAN	homeobox prox 1	76						microtubule organizing center|nucleus|perinuclear region of cytoplasm|tRNA-splicing ligase complex	identical protein binding				0	Breast(41;0.0639)|all_epithelial(31;0.101)					ATTCAAGATCGACAAGAAGCT	0.368													4	115					0	0	0.000157383	0	0
TXNDC16	57544	broad.mit.edu	37	14	52906028	52906028	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:52906028C>A	uc001wzs.2	-	20	2537	c.2088G>T	c.(2086-2088)CTG>CTT	p.L696L	TXNDC16_uc010tqu.1_Silent_p.L691L|TXNDC16_uc010aoe.2_RNA	NM_020784	NP_065835	Q9P2K2	TXD16_HUMAN	thioredoxin domain containing 16 isoform 1	696					cell redox homeostasis	extracellular region					0	Breast(41;0.0716)					CACCTGAATGCAGATTCACCA	0.423													5	46					3.59834e-05	0.000429	3.59834e-05	1	0
TXNDC16	57544	broad.mit.edu	37	14	52985899	52985899	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:52985899C>A	uc001wzs.2	-	7	954	c.505G>T	c.(505-507)GGA>TGA	p.G169*	TXNDC16_uc010tqu.1_Nonsense_Mutation_p.G164*|TXNDC16_uc010aoe.2_RNA	NM_020784	NP_065835	Q9P2K2	TXD16_HUMAN	thioredoxin domain containing 16 isoform 1	169					cell redox homeostasis	extracellular region					0	Breast(41;0.0716)					CCTGGTATTCCAATGGCTCTT	0.318													7	179					0.000274275	0.00290969	0.000274275	1	0
PSMC6	5706	broad.mit.edu	37	14	53184854	53184854	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:53184854C>T	uc010tqx.1	+	8	627	c.627C>T	c.(625-627)TTC>TTT	p.F209F	PSMC6_uc010tqw.1_Silent_p.F175F	NM_002806	NP_002797	P62333	PRS10_HUMAN	proteasome 26S ATPase subunit 6	195					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding, bridging			lung(1)	1	Breast(41;0.176)					ACTGCAATTTCTTAAAGGTAA	0.328													21	150					0	0	0.00047179	0	0
SAMD4A	23034	broad.mit.edu	37	14	55243204	55243204	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:55243204C>A	uc001xbb.2	+	10	1988	c.1987C>A	c.(1987-1989)CGC>AGC	p.R663S	SAMD4A_uc001xbc.2_Missense_Mutation_p.R575S|SAMD4A_uc001xbg.2_Missense_Mutation_p.R255S	NM_015589	NP_056404	Q9UPU9	SMAG1_HUMAN	sterile alpha motif domain containing 4 isoform	664					positive regulation of translation	cell junction|cytoplasm|dendrite|synapse|synaptosome	translation repressor activity				0						CCAGAGGACCCGCTCGCTGCC	0.607													5	118					4.096e-09	5.42436e-08	3.59834e-05	1	0
C14orf37	145407	broad.mit.edu	37	14	58605693	58605693	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:58605693G>C	uc001xdc.2	-	2	495	c.384C>G	c.(382-384)TCC>TCG	p.S128S	C14orf37_uc010tro.1_Silent_p.S166S|C14orf37_uc001xdd.2_Silent_p.S128S|C14orf37_uc001xde.2_Silent_p.S128S	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	128	Extracellular (Potential).					integral to membrane	binding				0						CTGGCTGGCTGGAACCAAATA	0.507													4	88					0	0	0.00024832	0	0
TOMM20L	387990	broad.mit.edu	37	14	58869452	58869452	+	Silent	SNP	C	A	A	rs115598131	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:58869452C>A	uc001xdr.1	+	3	267	c.235C>A	c.(235-237)CGG>AGG	p.R79R	TOMM20L_uc010trq.1_Intron	NM_207377	NP_997260	Q6UXN7	TO20L_HUMAN	translocase of outer mitochondrial membrane 20	79	Cytoplasmic (Potential).				protein targeting	integral to membrane|mitochondrial outer membrane translocase complex					0						GCAAGAGGTACGGATGGGAGA	0.308													7	363					0.000673444	0.00655963	0.000673444	1	0
TIMM9	26520	broad.mit.edu	37	14	58878647	58878647	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:58878647G>T	uc010aph.2	-	2	232	c.17C>A	c.(16-18)CCA>CAA	p.P6Q	TIMM9_uc001xds.2_Missense_Mutation_p.P6Q|TIMM9_uc010api.2_Missense_Mutation_p.P6Q	NM_012460	NP_036592	Q9Y5J7	TIM9_HUMAN	translocase of inner mitochondrial membrane 9	6					protein import into mitochondrial inner membrane|sensory perception of sound|transmembrane transport	mitochondrial inner membrane presequence translocase complex|mitochondrial intermembrane space protein transporter complex	zinc ion binding				0						ATCAGATTCTGGTATTTGTGC	0.299													8	139					0.000442599	0.00445669	0.000442599	1	0
C14orf149	112849	broad.mit.edu	37	14	59939746	59939746	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:59939746C>G	uc001xee.1	-	5	1041	c.1002G>C	c.(1000-1002)ACG>ACC	p.T334T		NM_144581	NP_653182	Q96EM0	PRCM_HUMAN	proline racemase-like	334							proline racemase activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.14)	L-Proline(DB00172)	TTGCTGTACCCGTGTAATGGG	0.368													4	101					0	0	0.00024832	0	0
JKAMP	51528	broad.mit.edu	37	14	59954414	59954414	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:59954414C>A	uc001xei.3	+	3	663	c.161C>A	c.(160-162)ACG>AAG	p.T54K	JKAMP_uc001xef.3_Missense_Mutation_p.T40K|JKAMP_uc001xeh.3_Missense_Mutation_p.T34K|JKAMP_uc001xeg.3_Missense_Mutation_p.T48K|JKAMP_uc010try.1_5'UTR|JKAMP_uc001xej.3_5'UTR	NM_001098625	NP_001092095	Q9P055	JKAMP_HUMAN	JNK1-associated membrane protein isoform 2	55	Lumenal (Potential).				ER-associated protein catabolic process|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ubiquitin protein ligase binding			breast(1)	1						GGACAGAGAACGAATGCACAG	0.358													7	265					0.000442599	0.00445669	0.000442599	1	0
PRKCH	5583	broad.mit.edu	37	14	62014512	62014512	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:62014512G>C	uc001xfn.2	+	13	2118	c.1813G>C	c.(1813-1815)GAG>CAG	p.E605Q	PRKCH_uc010tsa.1_Missense_Mutation_p.E444Q|PRKCH_uc010tsb.1_Missense_Mutation_p.E173Q|PRKCH_uc001xfo.2_RNA	NM_006255	NP_006246	P24723	KPCL_HUMAN	protein kinase C, eta	605	Protein kinase.				intracellular signal transduction|platelet activation	cytosol|plasma membrane	ATP binding|enzyme binding|metal ion binding|protein kinase C activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|large_intestine(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(108;0.045)|BRCA - Breast invasive adenocarcinoma(234;0.0906)|KIRC - Kidney renal clear cell carcinoma(182;0.182)		TCAGGGAGGCGAGCACGCCAT	0.498													4	273					0	0	0.00024832	0	0
HIF1A	3091	broad.mit.edu	37	14	62199183	62199183	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:62199183C>A	uc001xfq.2	+	7	1225	c.821C>A	c.(820-822)TCA>TAA	p.S274*	HIF1A_uc001xfr.2_Nonsense_Mutation_p.S274*|HIF1A_uc001xfs.2_Nonsense_Mutation_p.S275*	NM_001530	NP_001521	Q16665	HIF1A_HUMAN	hypoxia-inducible factor 1, alpha subunit	274	PAS 2.|Interaction with TSGA10 (By similarity).				cellular response to hypoxia|collagen metabolic process|connective tissue replacement involved in inflammatory response wound healing|elastin metabolic process|epithelial to mesenchymal transition|oxygen homeostasis|positive regulation of chemokine production|positive regulation of epithelial cell migration|positive regulation of hormone biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|regulation of transforming growth factor-beta2 production	cytoplasm|nucleolus|transcription factor complex	histone acetyltransferase binding|Hsp90 protein binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			kidney(3)|lung(1)	4				OV - Ovarian serous cystadenocarcinoma(108;1.62e-09)|BRCA - Breast invasive adenocarcinoma(234;0.189)		TTAGGCCGCTCAATTTATGAA	0.323													10	253					7.07596e-05	0.000828646	0.00074312	1	0
HIF1A	3091	broad.mit.edu	37	14	62207343	62207343	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:62207343C>A	uc001xfq.2	+	11	2061	c.1657C>A	c.(1657-1659)CAG>AAG	p.Q553K	HIF1A_uc001xfr.2_Missense_Mutation_p.Q553K|HIF1A_uc001xfs.2_Missense_Mutation_p.Q554K	NM_001530	NP_001521	Q16665	HIF1A_HUMAN	hypoxia-inducible factor 1, alpha subunit	553	ODD.|NTAD.				cellular response to hypoxia|collagen metabolic process|connective tissue replacement involved in inflammatory response wound healing|elastin metabolic process|epithelial to mesenchymal transition|oxygen homeostasis|positive regulation of chemokine production|positive regulation of epithelial cell migration|positive regulation of hormone biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|regulation of transforming growth factor-beta2 production	cytoplasm|nucleolus|transcription factor complex	histone acetyltransferase binding|Hsp90 protein binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			kidney(3)|lung(1)	4				OV - Ovarian serous cystadenocarcinoma(108;1.62e-09)|BRCA - Breast invasive adenocarcinoma(234;0.189)		ATTTTCTACTCAGGTATATGA	0.294													10	176					0.000442599	0.00445669	0.000442599	1	0
KCNH5	27133	broad.mit.edu	37	14	63269219	63269219	+	Silent	SNP	A	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:63269219A>C	uc001xfx.2	-	9	1701	c.1650T>G	c.(1648-1650)GCT>GCG	p.A550A	KCNH5_uc001xfy.2_Silent_p.A550A|KCNH5_uc001xfz.1_Silent_p.A492A	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	550	cNMP.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CCAATCGAAAAGCAGGATGTT	0.498													7	59					0	0	8.12818e-05	0	0
SYNE2	23224	broad.mit.edu	37	14	64416606	64416606	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:64416606G>T	uc001xgm.2	+	7	702	c.472G>T	c.(472-474)GTG>TTG	p.V158L	SYNE2_uc001xgk.2_Missense_Mutation_p.V158L|SYNE2_uc001xgl.2_Missense_Mutation_p.V158L	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	158	Cytoplasmic (Potential).|Actin-binding.				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TGATGTGAGTGTGGTTGACTC	0.448													7	271					3.07112e-06	3.84493e-05	0.000978159	1	0
SPTB	6710	broad.mit.edu	37	14	65239540	65239540	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:65239540A>C	uc001xht.2	-	25	5365	c.5311T>G	c.(5311-5313)TGG>GGG	p.W1771G	SPTB_uc001xhr.2_Missense_Mutation_p.W1771G|SPTB_uc001xhs.2_Missense_Mutation_p.W1771G|SPTB_uc001xhu.2_Missense_Mutation_p.W1771G|SPTB_uc010aqi.2_Missense_Mutation_p.W432G	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1771	Spectrin 15.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CCGTCCTTCCACTCGGCGATG	0.637													3	53					0	0	6.4e-05	0	0
GPHN	10243	broad.mit.edu	37	14	67389509	67389509	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:67389509C>A	uc001xiy.2	+	7	1704	c.583C>A	c.(583-585)CCT>ACT	p.P195T	GPHN_uc001xiw.2_Missense_Mutation_p.P177T|GPHN_uc001xix.2_Missense_Mutation_p.P195T|GPHN_uc010tss.1_Missense_Mutation_p.P208T|GPHN_uc010tst.1_Missense_Mutation_p.P164T|GPHN_uc010tsu.1_Missense_Mutation_p.P85T	NM_001024218	NP_001019389	Q9NQX3	GEPH_HUMAN	gephyrin isoform 2	195	Interaction with GABARAP (By similarity).				Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cell junction|cytoplasm|cytoskeleton|postsynaptic membrane	ATP binding|metal ion binding|nucleotidyltransferase activity			ovary(2)	2		all_cancers(7;0.0476)|all_hematologic(31;0.0116)		Epithelial(1;1.73e-08)|all cancers(60;3.15e-07)|OV - Ovarian serous cystadenocarcinoma(108;0.000275)|BRCA - Breast invasive adenocarcinoma(234;0.00323)|Colorectal(3;0.0938)|KIRC - Kidney renal clear cell carcinoma(182;0.184)		CCCTCTTTCCCCTCCTCCTAC	0.463			T	MLL	AL								8	160					0.000978159	0.00917326	0.000978159	1	0
GPHN	10243	broad.mit.edu	37	14	67555707	67555707	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:67555707G>C	uc001xiy.2	+	11	2174	c.1053G>C	c.(1051-1053)ATG>ATC	p.M351I	GPHN_uc001xix.2_Missense_Mutation_p.M384I|GPHN_uc010tss.1_Missense_Mutation_p.M397I|GPHN_uc010tst.1_Missense_Mutation_p.M320I|GPHN_uc010tsu.1_Missense_Mutation_p.M274I	NM_001024218	NP_001019389	Q9NQX3	GEPH_HUMAN	gephyrin isoform 2	351	MPT adenylyltransferase.				Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cell junction|cytoplasm|cytoskeleton|postsynaptic membrane	ATP binding|metal ion binding|nucleotidyltransferase activity			ovary(2)	2		all_cancers(7;0.0476)|all_hematologic(31;0.0116)		Epithelial(1;1.73e-08)|all cancers(60;3.15e-07)|OV - Ovarian serous cystadenocarcinoma(108;0.000275)|BRCA - Breast invasive adenocarcinoma(234;0.00323)|Colorectal(3;0.0938)|KIRC - Kidney renal clear cell carcinoma(182;0.184)		CAGATGGAATGGGGCGAGTCC	0.428			T	MLL	AL								4	95					0	0	0.00024832	0	0
RDH11	51109	broad.mit.edu	37	14	68157910	68157910	+	Missense_Mutation	SNP	G	C	C	rs115917815	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:68157910G>C	uc001xjv.3	-	4	491	c.401C>G	c.(400-402)CCG>CGG	p.P134R	RDH11_uc001xjw.3_Missense_Mutation_p.P121R|RDH11_uc001xjx.3_Missense_Mutation_p.P134R	NM_016026	NP_057110	Q8TC12	RDH11_HUMAN	retinol dehydrogenase 11	134	Cytoplasmic (Potential).				retinol metabolic process|steroid metabolic process	endoplasmic reticulum membrane|integral to membrane	binding|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.00047)|OV - Ovarian serous cystadenocarcinoma(108;0.00206)|BRCA - Breast invasive adenocarcinoma(234;0.00924)	Vitamin A(DB00162)	CTTCGAGTACGGACACATCAT	0.478													4	217					0	0	0.000157383	0	0
SLC8A3	6547	broad.mit.edu	37	14	70517735	70517735	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:70517735G>C	uc001xly.2	-	6	2875	c.2121C>G	c.(2119-2121)ACC>ACG	p.T707T	SLC8A3_uc001xlu.2_Silent_p.T64T|SLC8A3_uc001xlv.2_Silent_p.T78T|SLC8A3_uc001xlw.2_Silent_p.T704T|SLC8A3_uc001xlx.2_Silent_p.T705T|SLC8A3_uc001xlz.2_Silent_p.T701T|SLC8A3_uc010ara.2_RNA|SLC8A3_uc001xma.2_Silent_p.T64T	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	707	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		CTGCACTGACGGTGATGGCCT	0.547													5	44					0	0	8.12818e-05	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713576	70713577	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:70713576_70713577GG>AA	uc010ttg.1	-	1	942_943	c.291_292CC>TT	c.(289-294)TTCCCA>TTTTCA	p.P98S		NR_003951				SubName: Full=ADAM21-like protein;												0						CTTGTCATTGGGAAAACATTTC	0.351													8	71					0	0	6.4e-05	0	0
ZFYVE1	53349	broad.mit.edu	37	14	73445645	73445645	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:73445645T>C	uc001xnm.2	-	6	1983	c.1343A>G	c.(1342-1344)AAG>AGG	p.K448R	ZFYVE1_uc001xnl.2_Missense_Mutation_p.K33R|ZFYVE1_uc010arj.2_Missense_Mutation_p.K448R	NM_021260	NP_067083	Q9HBF4	ZFYV1_HUMAN	zinc finger, FYVE domain containing 1 isoform 1	448						endoplasmic reticulum|Golgi stack|perinuclear region of cytoplasm	1-phosphatidylinositol binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|zinc ion binding			skin(1)	1		all_lung(585;1.33e-09)		OV - Ovarian serous cystadenocarcinoma(108;1.6e-46)|BRCA - Breast invasive adenocarcinoma(234;0.00349)		CACTCCTTCCTTCCCATGATT	0.517													4	177					0	0	3.59834e-05	0	0
ZFYVE1	53349	broad.mit.edu	37	14	73490797	73490797	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:73490797C>G	uc001xnm.2	-	2	1060	c.420G>C	c.(418-420)AAG>AAC	p.K140N	ZFYVE1_uc010arj.2_Missense_Mutation_p.K140N	NM_021260	NP_067083	Q9HBF4	ZFYV1_HUMAN	zinc finger, FYVE domain containing 1 isoform 1	140						endoplasmic reticulum|Golgi stack|perinuclear region of cytoplasm	1-phosphatidylinositol binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|zinc ion binding			skin(1)	1		all_lung(585;1.33e-09)		OV - Ovarian serous cystadenocarcinoma(108;1.6e-46)|BRCA - Breast invasive adenocarcinoma(234;0.00349)		TCTTCTTCCTCTTGGTCTCCT	0.458													4	223					0	0	3.59834e-05	0	0
PAPLN	89932	broad.mit.edu	37	14	73721248	73721248	+	Silent	SNP	C	A	A	rs143213374		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:73721248C>A	uc010ttx.1	+	12	1493	c.1330C>A	c.(1330-1332)CGG>AGG	p.R444R	PAPLN_uc001xnw.3_Silent_p.R417R|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Silent_p.R444R	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	444	TSP type-1 4.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		CGTTGGCGTCCGGAAGCGGAG	0.622													5	137					0.000274275	0.00290969	0.000274275	1	0
PTGR2	145482	broad.mit.edu	37	14	74345991	74345991	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:74345991G>C	uc001xow.2	+	6	872	c.712G>C	c.(712-714)GAT>CAT	p.D238H	PTGR2_uc010tue.1_Missense_Mutation_p.D238H|PTGR2_uc001xox.2_Missense_Mutation_p.D238H|ZNF410_uc001xoy.1_Intron	NM_001146154	NP_001139626	Q8N8N7	PTGR2_HUMAN	prostaglandin reductase 2	238					prostaglandin metabolic process		15-oxoprostaglandin 13-oxidase activity|zinc ion binding				0						TAACATCAGTGATACAGTGAT	0.333													4	206					0	0	0.000157383	0	0
ZNF410	57862	broad.mit.edu	37	14	74364869	74364869	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:74364869A>G	uc001xoz.1	+	5	666	c.484A>G	c.(484-486)ATT>GTT	p.I162V	ZNF410_uc001xoy.1_RNA|ZNF410_uc010ary.1_RNA|ZNF410_uc010tuf.1_RNA|ZNF410_uc010tug.1_5'UTR|ZNF410_uc010tuh.1_Missense_Mutation_p.I89V|ZNF410_uc010tui.1_RNA|ZNF410_uc010arz.1_Missense_Mutation_p.I179V|ZNF410_uc001xpa.1_5'UTR|ZNF410_uc001xpb.1_Missense_Mutation_p.I162V|ZNF410_uc001xpc.1_Missense_Mutation_p.I109V|ZNF410_uc010tuj.1_5'UTR	NM_021188	NP_067011	Q86VK4	ZN410_HUMAN	zinc finger protein 410	162					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00369)		AGACAGTAGCATTCCATGGTT	0.498													9	102					0	0	0.000274275	0	0
DLST	1743	broad.mit.edu	37	14	75357821	75357821	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:75357821G>C	uc001xqv.2	+	7	456	c.393G>C	c.(391-393)GGG>GGC	p.G131G	DLST_uc001xqu.2_Silent_p.G43G|DLST_uc001xqt.2_Silent_p.G47G|DLST_uc010tuw.1_Silent_p.G45G|DLST_uc010tuu.1_Silent_p.G131G|DLST_uc001xqs.2_RNA|DLST_uc010tuv.1_Silent_p.G131G	NM_001933	NP_001924	P36957	ODO2_HUMAN	dihydrolipoamide S-succinyltransferase (E2	131	Lipoyl-binding.				lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus	dihydrolipoyllysine-residue succinyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00698)		TACCTGATGGGGGAAAAGTCG	0.483													4	116					0	0	3.59834e-05	0	0
TGFB3	7043	broad.mit.edu	37	14	76429804	76429804	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:76429804G>T	uc001xsc.2	-	5	1637	c.781C>A	c.(781-783)CGT>AGT	p.R261S	TGFB3_uc001xsd.2_Missense_Mutation_p.R259S	NM_003239	NP_003230	P10600	TGFB3_HUMAN	transforming growth factor, beta 3 precursor	261	Cell attachment site (Potential).				cell growth|cell-cell junction organization|detection of hypoxia|face morphogenesis|in utero embryonic development|induction of apoptosis|lung alveolus development|mammary gland development|menstrual cycle phase|negative regulation of cell proliferation|negative regulation of DNA replication|negative regulation of macrophage cytokine production|negative regulation of neuron apoptosis|odontogenesis|ossification involved in bone remodeling|palate development|platelet activation|platelet degranulation|positive regulation of bone mineralization|positive regulation of cell division|positive regulation of collagen biosynthetic process|positive regulation of DNA replication|positive regulation of epithelial to mesenchymal transition|positive regulation of filopodium assembly|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of protein secretion|positive regulation of SMAD protein import into nucleus|positive regulation of transcription from RNA polymerase II promoter|response to progesterone stimulus|salivary gland morphogenesis|transforming growth factor beta receptor signaling pathway	extracellular matrix|platelet alpha granule lumen	growth factor activity|identical protein binding|transforming growth factor beta binding|type I transforming growth factor beta receptor binding|type II transforming growth factor beta receptor binding			breast(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0169)		AGATCTCCACGGCCATGGTCA	0.577													5	111					0.000157383	0.00173811	0.000157383	1	0
C14orf148	122945	broad.mit.edu	37	14	77873143	77873143	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:77873143C>G	uc001xtr.2	-	4	753	c.606G>C	c.(604-606)TGG>TGC	p.W202C	C14orf148_uc010tvi.1_Missense_Mutation_p.W202C	NM_001113475	NP_001106946	Q6NXP6	CN148_HUMAN	hypothetical protein LOC122945 isoform 1	202					proline biosynthetic process		binding|pyrroline-5-carboxylate reductase activity				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0277)		TATTGGCCCCCCAGACGCTGA	0.498													5	27					0	0	0.000602214	0	0
C14orf148	122945	broad.mit.edu	37	14	77873192	77873192	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:77873192T>A	uc001xtr.2	-	4	704	c.557A>T	c.(556-558)AAT>ATT	p.N186I	C14orf148_uc010tvi.1_Missense_Mutation_p.N186I	NM_001113475	NP_001106946	Q6NXP6	CN148_HUMAN	hypothetical protein LOC122945 isoform 1	186					proline biosynthetic process		binding|pyrroline-5-carboxylate reductase activity				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0277)		CCGCAAGATATTGGTGTGGTT	0.468													5	24					0	0	0.000602214	0	0
SEL1L	6400	broad.mit.edu	37	14	81993128	81993128	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:81993128G>C	uc010tvv.1	-	3	406	c.289C>G	c.(289-291)CCA>GCA	p.P97A	SEL1L_uc001xvo.3_Missense_Mutation_p.P97A	NM_005065	NP_005056	Q9UBV2	SE1L1_HUMAN	sel-1 suppressor of lin-12-like precursor	97	Lumenal (Potential).|Interaction with ERLEC1, OS9 and SYVN1.				Notch signaling pathway	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0299)		TCTGGATTTGGAGACTCTAGA	0.408													4	163					0	0	0.00024832	0	0
FLRT2	23768	broad.mit.edu	37	14	86089475	86089475	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:86089475C>A	uc001xvr.2	+	2	2384	c.1617C>A	c.(1615-1617)TCC>TCA	p.S539S	FLRT2_uc010atd.2_Silent_p.S539S	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	539	Extracellular (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		GCATGGGCTCCCCCTTTCTGC	0.577													6	116					0.000157383	0.00173811	0.000157383	1	0
EML5	161436	broad.mit.edu	37	14	89093316	89093316	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:89093316G>C	uc001xxg.2	-	35	4792	c.4606C>G	c.(4606-4608)CAG>GAG	p.Q1536E	EML5_uc001xxf.2_Missense_Mutation_p.Q323E|EML5_uc001xxh.1_Missense_Mutation_p.Q667E	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	1528	WD 22.					cytoplasm|microtubule				ovary(3)	3						GAGACAAACTGGGTATCTGAA	0.453													6	147					0	0	8.12818e-05	0	0
EML5	161436	broad.mit.edu	37	14	89124642	89124642	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:89124642G>C	uc001xxg.2	-	27	3952	c.3766C>G	c.(3766-3768)CTA>GTA	p.L1256V	EML5_uc001xxf.2_Missense_Mutation_p.L51V|EML5_uc001xxh.1_Missense_Mutation_p.L395V	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	1256	WD 19.					cytoplasm|microtubule				ovary(3)	3						GTACCGCCTAGGGTAACCAAC	0.418													5	146					0	0	0.000602214	0	0
TDP1	55775	broad.mit.edu	37	14	90450897	90450897	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:90450897G>T	uc001xxy.2	+	9	1221	c.922G>T	c.(922-924)GGA>TGA	p.G308*	TDP1_uc010atm.2_RNA|TDP1_uc001xxz.2_Nonsense_Mutation_p.G308*|TDP1_uc010atn.2_Nonsense_Mutation_p.G308*|TDP1_uc001xya.2_Nonsense_Mutation_p.G69*|TDP1_uc001xyb.2_RNA|TDP1_uc010ato.2_Nonsense_Mutation_p.G308*|TDP1_uc001xyd.1_5'Flank	NM_018319	NP_060789	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	308					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)		AATTGCTGATGGAACCCACAA	0.403								Repair_of_DNA-protein_crosslinks					8	148					3.07112e-06	3.84493e-05	0.000978159	1	0
TC2N	123036	broad.mit.edu	37	14	92249550	92249550	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:92249550C>A	uc001xzu.3	-	12	1558	c.1367G>T	c.(1366-1368)TGG>TTG	p.W456L	TC2N_uc001xzt.3_Missense_Mutation_p.W456L|TC2N_uc010auc.2_Missense_Mutation_p.W392L|TC2N_uc001xzv.3_Missense_Mutation_p.W456L	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	456	C2.					nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		TTCACTTATCCAAATCTGTAA	0.323													9	103					9.31168e-06	0.000114714	0.000151284	1	0
TRIP11	9321	broad.mit.edu	37	14	92466328	92466328	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:92466328G>C	uc001xzy.2	-	12	5470	c.4682C>G	c.(4681-4683)ACT>AGT	p.T1561S	TRIP11_uc010auf.1_Missense_Mutation_p.T1297S	NM_004239	NP_004230	Q15643	TRIPB_HUMAN	thyroid hormone receptor interactor 11	1561	Potential.				transcription from RNA polymerase II promoter	cytoskeleton|Golgi apparatus|membrane|nucleus	protein binding|transcription coactivator activity			ovary(6)|skin(2)|kidney(2)|central_nervous_system(1)|lung(1)|breast(1)	13				COAD - Colon adenocarcinoma(157;0.223)		CTGTAGGGCAGTATTTTCCAT	0.333			T	PDGFRB	AML								3	139					0	0	3.59834e-05	0	0
ATXN3	4287	broad.mit.edu	37	14	92555130	92555131	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:92555130_92555131GG>TT	uc001yac.3	-	6	487_488	c.418_419CC>AA	c.(418-420)CCA>AAA	p.P140K	ATXN3_uc010aug.2_Missense_Mutation_p.P125K|ATXN3_uc001yad.3_Missense_Mutation_p.P85K|ATXN3_uc010auh.2_Missense_Mutation_p.P74K|ATXN3_uc001yae.3_Missense_Mutation_p.P42K|ATXN3_uc010twl.1_RNA	NM_004993	NP_004984	P54252	ATX3_HUMAN	ataxin 3 reference isoform	140	Josephin.				cell death|nervous system development|nucleotide-excision repair|regulation of transcription, DNA-dependent|synaptic transmission|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleoplasm	cysteine-type peptidase activity|protein binding				0		all_cancers(154;0.0768)		COAD - Colon adenocarcinoma(157;0.224)		TATTAATTCTGGACCCGTCAAG	0.322													10	462					0	0	6.4e-05	0	0
RIN3	79890	broad.mit.edu	37	14	93151387	93151387	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:93151387C>A	uc001yap.2	+	9	2675	c.2523C>A	c.(2521-2523)GAC>GAA	p.D841E	RIN3_uc010auk.2_Missense_Mutation_p.D503E|RIN3_uc001yaq.2_Missense_Mutation_p.D766E|RIN3_uc001yas.1_Missense_Mutation_p.D503E	NM_024832	NP_079108	Q8TB24	RIN3_HUMAN	Ras and Rab interactor 3	841	VPS9.				endocytosis|signal transduction	cytoplasmic membrane-bounded vesicle|early endosome	GTPase activator activity|Ras GTPase binding			lung(2)|ovary(1)	3		all_cancers(154;0.0701)				AGAGCTACGACAAGATCACGG	0.642													5	66					8.12818e-05	0.000938396	8.12818e-05	1	0
UBR7	55148	broad.mit.edu	37	14	93685665	93685665	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:93685665C>G	uc001ybm.3	+	8	1154	c.918C>G	c.(916-918)CCC>CCG	p.P306P	UBR7_uc001ybn.3_Silent_p.P230P|UBR7_uc010auq.2_Silent_p.P155P	NM_175748	NP_786924	Q8N806	UBR7_HUMAN	ubiquitin protein ligase E3 component n-recognin	306							ubiquitin-protein ligase activity|zinc ion binding				0						CCTATTGGCCCCTGAACTGGC	0.433													3	51					0	0	6.4e-05	0	0
KIAA1409	57578	broad.mit.edu	37	14	94084554	94084554	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:94084554G>C	uc001ybv.1	+	27	3859	c.3776G>C	c.(3775-3777)TGT>TCT	p.C1259S	KIAA1409_uc001ybs.1_Missense_Mutation_p.C1237S	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1414						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TACCGAGACTGTGATATCAGC	0.438													3	87					0	0	0.000602214	0	0
SERPINA13	388007	broad.mit.edu	37	14	95109995	95109995	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:95109995C>G	uc001ydt.2	+	3	1032	c.944C>G	c.(943-945)CCC>CGC	p.P315R		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						TTCATCTTCCCCAACAGGGGC	0.582													3	37					0	0	0.00024832	0	0
SNORD113-7	767567	broad.mit.edu	37	14	101407486	101407486	+	RNA	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:101407486G>C	uc001yio.2	+	1		c.24G>C				NR_003235				Homo sapiens small nucleolar RNA, C/D box 113-7 (SNORD113-7), non-coding RNA.												0						AGTATGCGTGGGGCATCTGAA	0.358													3	50					0	0	0.000602214	0	0
MIR1197	100302250	broad.mit.edu	37	14	101491905	101491905	+	RNA	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:101491905C>T	hsa-mir-1197|MI0006656	+			c.5C>T			uc001yjy.1_5'Flank|MIR323_hsa-mir-323|MI0000807_5'Flank|MIR758_hsa-mir-758|MI0003757_5'Flank|MIR329-1_hsa-mir-329-1|MI0001725_5'Flank|MIR329-2_hsa-mir-329-2|MI0001726_5'Flank																	0						AGCGTCACTTCCTGGTATTTG	0.493													7	57					0	0	0.000442599	0	0
MIR154	406946	broad.mit.edu	37	14	101526141	101526141	+	RNA	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:101526141G>C	hsa-mir-154|MI0000480	+			c.50G>C			uc010awg.2_RNA|MIR496_hsa-mir-496|MI0003136_5'Flank|uc010awh.1_5'Flank|MIR377_hsa-mir-377|MI0000785_5'Flank																	0						TATTTGTGACGAATCATACAC	0.502													4	149					0	0	3.59834e-05	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102461081	102461081	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:102461081C>A	uc001yks.2	+	13	3392	c.3228C>A	c.(3226-3228)CTC>CTA	p.L1076L		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	1076	Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						GAGAAGATCTCAACAAATGGC	0.393													9	91					0.000673444	0.00655963	0.000673444	1	0
ZNF839	55778	broad.mit.edu	37	14	102802146	102802146	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:102802146C>G	uc001ylo.2	+	5	1632	c.1282C>G	c.(1282-1284)CAG>GAG	p.Q428E	ZNF839_uc010awk.1_Missense_Mutation_p.Q544E|ZNF839_uc001ylp.2_RNA|ZNF839_uc001ylq.1_Missense_Mutation_p.Q428E|ZNF839_uc001ylr.2_Missense_Mutation_p.Q353E|ZNF839_uc001yls.2_Missense_Mutation_p.Q43E|ZNF839_uc001ylt.2_Missense_Mutation_p.Q18E	NM_018335	NP_060805	A8K0R7	ZN839_HUMAN	zinc finger protein 839	428						intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)	2						TCTGTGTTCCCAGGAGACCCT	0.358													4	99					0	0	0.00024832	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103434927	103434927	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:103434927G>C	uc001ymi.1	-	15	2354	c.2122C>G	c.(2122-2124)CAT>GAT	p.H708D		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	708	Potential.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		TCTAGCACATGGGAGGCCTCA	0.428													6	187					0	0	0.000274275	0	0
TDRD9	122402	broad.mit.edu	37	14	104481125	104481125	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:104481125C>G	uc001yom.3	+	21	2200	c.2170C>G	c.(2170-2172)CGG>GGG	p.R724G	TDRD9_uc001yon.3_Missense_Mutation_p.R462G	NM_153046	NP_694591	Q8NDG6	TDRD9_HUMAN	tudor domain containing 9	724					cell differentiation|DNA methylation involved in gamete generation|fertilization|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	nucleus|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0768)				TGTTGATTCTCGGCGACCTGT	0.373													5	121					0	0	8.12818e-05	0	0
ADSSL1	122622	broad.mit.edu	37	14	105208254	105208254	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:105208254C>G	uc001ypd.2	+	9	937	c.863C>G	c.(862-864)CCG>CGG	p.P288R	INF2_uc010tyi.1_Intron|ADSSL1_uc001ype.2_Missense_Mutation_p.P331R|ADSSL1_uc001ypf.2_RNA	NM_152328	NP_689541	Q8N142	PURA1_HUMAN	adenylosuccinate synthase like 1 isoform 2	288					AMP biosynthetic process|immune system process|purine base metabolic process	cytosol	adenylosuccinate synthase activity|GTP binding|magnesium ion binding|phosphate binding			ovary(1)|central_nervous_system(1)	2		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00153)|OV - Ovarian serous cystadenocarcinoma(23;0.0148)|Epithelial(46;0.0396)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.18)	L-Aspartic Acid(DB00128)	GGCATCCCCCCGCAGAACATA	0.617													4	62					0	0	3.59834e-05	0	0
AHNAK2	113146	broad.mit.edu	37	14	105412377	105412377	+	Silent	SNP	A	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:105412377A>C	uc010axc.1	-	7	9531	c.9411T>G	c.(9409-9411)ACT>ACG	p.T3137T	AHNAK2_uc001ypx.2_Silent_p.T3037T	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3137						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TGTCTTTGGCAGTCACATCCT	0.597													6	63					0	0	0.000157383	0	0
AHNAK2	113146	broad.mit.edu	37	14	105412383	105412383	+	Silent	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:105412383A>G	uc010axc.1	-	7	9525	c.9405T>C	c.(9403-9405)GAT>GAC	p.D3135D	AHNAK2_uc001ypx.2_Silent_p.D3035D	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3135						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TGGCAGTCACATCCTTGTCGG	0.592													5	80					0	0	0.000157383	0	0
AHNAK2	113146	broad.mit.edu	37	14	105412878	105412878	+	Silent	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:105412878A>G	uc010axc.1	-	7	9030	c.8910T>C	c.(8908-8910)GAT>GAC	p.D2970D	AHNAK2_uc001ypx.2_Silent_p.D2870D	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2970						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TGGCAGTCACATCCTTGTCGG	0.597													6	259					0	0	0.000442599	0	0
AHNAK2	113146	broad.mit.edu	37	14	105414639	105414639	+	Silent	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:105414639A>G	uc010axc.1	-	7	7269	c.7149T>C	c.(7147-7149)GAT>GAC	p.D2383D	AHNAK2_uc001ypx.2_Silent_p.D2283D	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2383						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGAGTTTCACATCCACTTGGC	0.632													6	222					0	0	0.000274275	0	0
AHNAK2	113146	broad.mit.edu	37	14	105416895	105416895	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:105416895C>G	uc010axc.1	-	7	5013	c.4893G>C	c.(4891-4893)CCG>CCC	p.P1631P	AHNAK2_uc001ypx.2_Silent_p.P1531P	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1631						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCTTTGCTCTCGGGGCCTGGA	0.592													4	228					0	0	0.000157383	0	0
AHNAK2	113146	broad.mit.edu	37	14	105419701	105419701	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:105419701G>T	uc010axc.1	-	7	2207	c.2087C>A	c.(2086-2088)GCC>GAC	p.A696D	AHNAK2_uc001ypx.2_Missense_Mutation_p.A596D	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	696						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			ATCCACCGAGGCCTCCATGGA	0.592													6	227					2.31682e-05	0.000280436	0.000308642	1	0
ADAM6	8755	broad.mit.edu	37	14	106091268	106091269	+	RNA	DNP	GG	CT	CT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:106091268_106091269GG>CT	uc010tyt.1	-	3647		c.62239_62240CC>AG			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						GATGGAGGACGGGAGGCCTTTG	0.614													4	278					0	0	6.4e-05	0	0
ADAM6	8755	broad.mit.edu	37	14	106237454	106237454	+	RNA	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:106237454C>G	uc010tyt.1	-	3611		c.57429G>C			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						CTCACCAACTCTCTTGTCCAC	0.647													4	128					0	0	3.59834e-05	0	0
ADAM6	8755	broad.mit.edu	37	14	106518851	106518851	+	RNA	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:106518851C>T	uc010tyt.1	-	1629		c.32687G>A								Parts of antibodies, mostly variable regions.												0						GCCCCAATTCCATGGTGAGTC	0.498													24	178					0	0	0.000720815	0	0
ADAM6	8755	broad.mit.edu	37	14	106641665	106641665	+	RNA	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:106641665G>A	uc010tyt.1	-	1021		c.24336C>T								Parts of antibodies, mostly variable regions.												0						CTCTGCCCTGGAGCTTCTGTG	0.552													17	124					0	0	0.000422831	0	0
ADAM6	8755	broad.mit.edu	37	14	106757668	106757668	+	RNA	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:106757668T>C	uc010tyt.1	-	472		c.16397A>G								Parts of antibodies, mostly variable regions.												0						CACAGTAATATGTGGCTGTGT	0.542													5	92					0	0	8.12818e-05	0	0
ADAM6	8755	broad.mit.edu	37	14	107099579	107099579	+	RNA	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:107099579C>A	uc010tyt.1	-	95		c.4285G>T								Parts of antibodies, mostly variable regions.												0						CAGCTCAGCCCAAACTCCATG	0.498													9	224					4.7546e-09	6.29355e-08	0.000422831	1	0
Unknown	0	broad.mit.edu	37	15	20588627	20588627	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:20588627G>T	uc001ytg.2	-	27	4143	c.3434C>A	c.(3433-3435)TCA>TAA	p.S1145*	uc010tyx.1_RNA					RecName: Full=Putative HERC2-like protein 3;																		CTCACACACTGAGTTCATTCT	0.398													10	161					0.000978159	0.00917326	0.000978159	1	0
LOC646214	646214	broad.mit.edu	37	15	21937916	21937916	+	RNA	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:21937916G>T	uc010tzj.1	-	1		c.2824C>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						ATTTCTGGCCGTTCCTTTTCT	0.443													8	683					2.17888e-05	0.000264662	0.000442599	1	0
OR4M2	390538	broad.mit.edu	37	15	22368774	22368774	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:22368774G>T	uc010tzu.1	+	1	199	c.199G>T	c.(199-201)GCC>TCC	p.A67S	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		GGCTAATCTGGCCTTCCTTGA	0.408													7	364					2.17888e-05	0.000264662	0.000442599	1	0
OR4N4	283694	broad.mit.edu	37	15	22383003	22383003	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:22383003C>T	uc001yuc.1	+	7	1512	c.531C>T	c.(529-531)TTC>TTT	p.F177F	LOC727924_uc001yub.1_Intron|OR4N4_uc010tzv.1_Silent_p.F177F	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TGGACAACTTCTTCTGTGATG	0.522													17	250					0	0	0.000132079	0	0
WHAMML1	339005	broad.mit.edu	37	15	23205183	23205183	+	RNA	SNP	G	C	C	rs143369458	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:23205183G>C	uc001yvg.2	-	2		c.612C>G			WHAMML1_uc010ayc.2_RNA|WHAMML1_uc010ayd.2_RNA|WHAMML1_uc010aye.1_RNA	NR_003521				Homo sapiens mRNA; cDNA DKFZp313L2232 (from clone DKFZp313L2232).												0						TTGGCTTTTCGGTGTCCTTGA	0.403													4	20					0	0	0.00024832	0	0
WHAMML1	339005	broad.mit.edu	37	15	23205193	23205193	+	RNA	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:23205193A>G	uc001yvg.2	-	2		c.602T>C			WHAMML1_uc010ayc.2_RNA|WHAMML1_uc010ayd.2_RNA|WHAMML1_uc010aye.1_RNA	NR_003521				Homo sapiens mRNA; cDNA DKFZp313L2232 (from clone DKFZp313L2232).												0						GGTGTCCTTGAATAACCTAGA	0.398													4	20					0	0	0.00024832	0	0
ATP10A	57194	broad.mit.edu	37	15	25936880	25936880	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:25936880G>T	uc010ayu.2	-	15	3253	c.3147C>A	c.(3145-3147)TCC>TCA	p.S1049S		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	1049	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		CCTCCTGGCCGGAGATTCCCA	0.512													7	229					2.0095e-06	2.53297e-05	8.12818e-05	1	0
Unknown	0	broad.mit.edu	37	15	28599954	28599954	+	Silent	SNP	A	G	G	rs144345425	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:28599954A>G	uc010uaf.1	-	4	306	c.288T>C	c.(286-288)CTT>CTC	p.L96L						SubName: Full=Putative uncharacterized protein ENSP00000383535; Flags: Fragment;																		GGCTGTAGTAAAGTGCCATCT	0.478													6	211					0	0	0.000157383	0	0
TJP1	7082	broad.mit.edu	37	15	30010269	30010269	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:30010269G>A	uc001zcr.2	-	22	4405	c.3930C>T	c.(3928-3930)CCC>CCT	p.P1310P	TJP1_uc010azl.2_Silent_p.P1298P|TJP1_uc001zcq.2_Silent_p.P1234P|TJP1_uc001zcs.2_Silent_p.P1230P	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	1310					cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		TCTGAGAAGTGGGTTTGGGAC	0.388													6	323					0	0	0.000157383	0	0
TJP1	7082	broad.mit.edu	37	15	30053447	30053447	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:30053447C>G	uc001zcr.2	-	8	1380	c.905G>C	c.(904-906)CGA>CCA	p.R302P	TJP1_uc010azl.2_Missense_Mutation_p.R290P|TJP1_uc001zcq.2_Missense_Mutation_p.R306P|TJP1_uc001zcs.2_Missense_Mutation_p.R302P	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	302					cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		ATCGTGTGATCGACCAGAATG	0.483													4	102					0	0	0.00024832	0	0
TRPM1	4308	broad.mit.edu	37	15	31319142	31319142	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:31319142G>T	uc001zfm.2	-	25	3534	c.3406C>A	c.(3406-3408)CAA>AAA	p.Q1136K	TRPM1_uc010azy.2_Missense_Mutation_p.Q1043K|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	1136	Cytoplasmic (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		CGTTCCTCTTGGTCCCCTTCT	0.478													7	122					3.86212e-05	0.000457303	0.000673444	1	0
GREM1	26585	broad.mit.edu	37	15	33023301	33023301	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:33023301C>T	uc001zhe.1	+	2	569	c.410C>T	c.(409-411)TCC>TTC	p.S137F	GREM1_uc001zhd.1_Missense_Mutation_p.S67F|GREM1_uc010uby.1_Missense_Mutation_p.S96F	NM_013372	NP_037504	O60565	GREM1_HUMAN	gremlin-1 precursor	137	CTCK.				negative regulation of BMP signaling pathway|nervous system development|regulation of epithelial to mesenchymal transition	extracellular space	cytokine activity				0		all_lung(180;1.49e-09)		all cancers(64;2.97e-18)|Epithelial(43;3.15e-12)|GBM - Glioblastoma multiforme(186;2.32e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0107)		GAGGAAGGTTCCTTTCAGTCC	0.522													14	63					0	0	0.000308642	0	0
AVEN	57099	broad.mit.edu	37	15	34158856	34158856	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:34158856G>C	uc001zhj.2	-	6	1103	c.1047C>G	c.(1045-1047)ACC>ACG	p.T349T		NM_020371	NP_065104	Q9NQS1	AVEN_HUMAN	cell death regulator aven	349					anti-apoptosis|apoptosis	endomembrane system|intracellular|membrane|membrane fraction	protein binding			kidney(1)	1		all_lung(180;1.78e-08)		all cancers(64;1.66e-15)|GBM - Glioblastoma multiforme(113;1.42e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0359)		GCTCTTCCTCGGTAACATTTT	0.433													5	137					0	0	8.12818e-05	0	0
C15orf55	256646	broad.mit.edu	37	15	34646877	34646877	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:34646877C>T	uc001zif.2	+	5	1377	c.1222C>T	c.(1222-1224)CCA>TCA	p.P408S	C15orf55_uc010ucc.1_Missense_Mutation_p.P436S|C15orf55_uc010ucd.1_Missense_Mutation_p.P426S	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	408						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		GTATCCAGATCCAGGTCTCCT	0.532			T	BRD3|BRD4	lethal midline carcinoma								15	166					0	0	0.000566183	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40265838	40265838	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:40265838G>C	uc001zkm.1	+	11	1756	c.1706G>C	c.(1705-1707)CGG>CCG	p.R569P	EIF2AK4_uc001zkl.2_Missense_Mutation_p.R569P|EIF2AK4_uc010bbj.1_Missense_Mutation_p.R298P	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	569					translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		CCTAGCAACCGGCTACCCAGT	0.418													4	180					0	0	0.000157383	0	0
C15orf23	90417	broad.mit.edu	37	15	40684200	40684200	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:40684200C>A	uc001zll.2	+	8	913	c.798C>A	c.(796-798)GCC>GCA	p.A266A	C15orf23_uc010ucp.1_Silent_p.A266A|C15orf23_uc001zlo.2_3'UTR|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	266	Potential.					nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		ACGAAACAGCCAAAAAGCAGA	0.393													8	202					0.000673444	0.00655963	0.000673444	1	0
CHP	11261	broad.mit.edu	37	15	41562799	41562799	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:41562799C>G	uc001znl.2	+	5	538	c.394C>G	c.(394-396)CGT>GGT	p.R132G		NM_007236	NP_009167	Q99653	CHP1_HUMAN	calcium binding protein P22	132	EF-hand 3.|1.				potassium ion transport|small GTPase mediated signal transduction		potassium channel regulator activity			ovary(1)	1		all_cancers(109;1.19e-18)|all_epithelial(112;5.87e-16)|Lung NSC(122;8.86e-12)|all_lung(180;2.47e-10)|Melanoma(134;0.0574)|Colorectal(260;0.0946)|Ovarian(310;0.143)		GBM - Glioblastoma multiforme(113;1.68e-06)|LUSC - Lung squamous cell carcinoma(244;0.008)|Lung(196;0.00802)|BRCA - Breast invasive adenocarcinoma(123;0.169)		AAAGATCTCCCGTGATGAGCT	0.393													4	145					0	0	8.12818e-05	0	0
RPAP1	26015	broad.mit.edu	37	15	41821679	41821679	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:41821679C>G	uc001zod.2	-	9	1271	c.1147G>C	c.(1147-1149)GAG>CAG	p.E383Q		NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	383						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		TCTGCCTCCTCTCCATGGTGG	0.562													4	14					0	0	0.00024832	0	0
MGA	23269	broad.mit.edu	37	15	42058824	42058824	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:42058824C>G	uc010ucy.1	+	24	8725	c.8544C>G	c.(8542-8544)CCC>CCG	p.P2848P	MGA_uc010ucz.1_Silent_p.P2639P	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	2809						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		CTGAACTACCCAGCTCTATGG	0.463													6	186					0	0	8.12818e-05	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42106802	42106802	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:42106802C>G	uc001zok.3	+	11	1339	c.1053C>G	c.(1051-1053)ACC>ACG	p.T351T	MAPKBP1_uc001zoj.3_Silent_p.T345T|MAPKBP1_uc010bcj.2_Intron|MAPKBP1_uc010bci.2_Silent_p.T345T|MAPKBP1_uc010udb.1_Silent_p.T233T|MAPKBP1_uc010bck.2_5'UTR|MAPKBP1_uc010bcl.2_Intron	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	351	WD 5.									central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		TTGCCTTGACCTTTGATCCTA	0.507													4	216					0	0	0.00024832	0	0
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42138998	42138998	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:42138998C>G	uc010bco.2	+	18	2013	c.1912C>G	c.(1912-1914)CTG>GTG	p.L638V	JMJD7-PLA2G4B_uc001zoo.3_Missense_Mutation_p.L869V|JMJD7-PLA2G4B_uc010bcn.2_Missense_Mutation_p.L869V|JMJD7-PLA2G4B_uc001zoq.3_Missense_Mutation_p.L339V	NM_001114633	NP_001108105	P0C869	PA24B_HUMAN	phospholipase A2, group IVB	638	PLA2c.				arachidonic acid metabolic process|calcium-mediated signaling|glycerophospholipid catabolic process|inflammatory response|parturition	cytosol|early endosome membrane|extracellular region|mitochondrial membrane	calcium ion binding|calcium-dependent phospholipase A2 activity|calcium-dependent phospholipid binding|lysophospholipase activity			large_intestine(1)	1						GGACCTCATCCTGTCATTGGA	0.652													4	118					0	0	3.59834e-05	0	0
SPTBN5	51332	broad.mit.edu	37	15	42167107	42167107	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:42167107C>A	uc001zos.2	-	23	4663	c.4330G>T	c.(4330-4332)GCC>TCC	p.A1444S		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	1479	Spectrin 11.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		GCCATGGAGGCGAGGGCAGCC	0.662													4	33					3.59834e-05	0.000429	3.59834e-05	1	0
GANC	2595	broad.mit.edu	37	15	42643620	42643620	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:42643620C>G	uc001zpi.2	+	23	2939	c.2625C>G	c.(2623-2625)ACC>ACG	p.T875T	CAPN3_uc001zpk.1_5'UTR|CAPN3_uc001zpl.1_5'UTR|CAPN3_uc010udf.1_5'Flank|CAPN3_uc010udg.1_5'Flank	NM_198141	NP_937784	Q8TET4	GANC_HUMAN	glucosidase, alpha; neutral C	875					carbohydrate metabolic process		carbohydrate binding|maltose alpha-glucosidase activity			central_nervous_system(2)	2		all_cancers(109;3.08e-16)|all_epithelial(112;7.48e-15)|Lung NSC(122;3.08e-09)|all_lung(180;1.48e-08)|Melanoma(134;0.0574)|Colorectal(260;0.153)		GBM - Glioblastoma multiforme(94;1.06e-06)		CTGTGACTACCCACTCATCTG	0.443													4	68					0	0	3.59834e-05	0	0
CAPN3	825	broad.mit.edu	37	15	42652311	42652311	+	Missense_Mutation	SNP	C	G	G	rs148538711		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:42652311C>G	uc001zpn.1	+	1	614	c.308C>G	c.(307-309)CCG>CGG	p.P103R	CAPN3_uc001zpk.1_Intron|CAPN3_uc001zpl.1_Intron|CAPN3_uc010udf.1_Intron|CAPN3_uc010udg.1_Intron|CAPN3_uc001zpo.1_Missense_Mutation_p.P103R|CAPN3_uc001zpp.1_Missense_Mutation_p.P103R	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a	103	Calpain catalytic.				muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		AAGAGACCTCCGGTGAGTAGC	0.562													5	199					0	0	0.000157383	0	0
UBR1	197131	broad.mit.edu	37	15	43313514	43313514	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:43313514G>C	uc001zqq.2	-	27	2965	c.2899C>G	c.(2899-2901)CAG>GAG	p.Q967E	UBR1_uc010udk.1_Missense_Mutation_p.Q967E	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	967					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		CCTTCTAACTGGGGAATTCCT	0.313													4	227					0	0	0.00024832	0	0
CATSPER2	117155	broad.mit.edu	37	15	43940247	43940247	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:43940247G>T	uc001zsh.2	-	2	228	c.13C>A	c.(13-15)CAA>AAA	p.Q5K	CATSPER2_uc010bdm.2_RNA|CATSPER2_uc001zsi.2_Missense_Mutation_p.Q5K|CATSPER2_uc001zsj.2_Missense_Mutation_p.Q5K|CATSPER2_uc001zsk.2_Missense_Mutation_p.Q5K|CATSPER2_uc001zsl.1_Intron	NM_172095	NP_742093	Q96P56	CTSR2_HUMAN	sperm-associated cation channel 2 isoform 2	5	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			ovary(1)	1		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		TCTTCTTGTTGGTAAGCGGCC	0.488													9	338					3.45872e-05	0.000417197	0.000422831	1	0
PDIA3	2923	broad.mit.edu	37	15	44053650	44053650	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:44053650G>A	uc001zsu.2	+	4	541	c.393G>A	c.(391-393)CAG>CAA	p.Q131Q	PDIA3_uc010bdp.2_Silent_p.Q111Q|PDIA3_uc010ued.1_5'UTR	NM_005313	NP_005304	P30101	PDIA3_HUMAN	protein disulfide-isomerase A3 precursor	131	Thioredoxin 1.				cell redox homeostasis|glycerol ether metabolic process|post-translational protein modification|protein folding|protein import into nucleus|protein N-linked glycosylation via asparagine|protein retention in ER lumen|signal transduction	endoplasmic reticulum lumen|melanosome	cysteine-type endopeptidase activity|electron carrier activity|phospholipase C activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			ovary(1)|skin(1)	2		all_cancers(109;2.61e-15)|all_epithelial(112;1.12e-12)|Lung NSC(122;2.17e-08)|all_lung(180;2.45e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.48e-07)		TGAAGAAGCAGGCAGGACCAG	0.343													44	185					0	0	0.000781405	0	0
WDR76	79968	broad.mit.edu	37	15	44127344	44127344	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:44127344C>A	uc001zti.1	+	3	571	c.548C>A	c.(547-549)TCT>TAT	p.S183Y		NM_024908	NP_079184	Q9H967	WDR76_HUMAN	WD repeat domain 76	183											0		all_cancers(109;3.26e-11)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.61e-06)|all_lung(180;1.5e-05)|Melanoma(134;0.0417)		all cancers(107;3.78e-21)|GBM - Glioblastoma multiforme(94;5.04e-07)		CTTCAGTTGTCTGAGGTTTGT	0.269													6	68					0.000157383	0.00173811	0.000157383	1	0
SPG11	80208	broad.mit.edu	37	15	44867146	44867146	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:44867146C>G	uc001ztx.2	-	31	5991	c.5960G>C	c.(5959-5961)GGG>GCG	p.G1987A	SPG11_uc010bdw.2_Intron|SPG11_uc010ueh.1_Intron|SPG11_uc010uei.1_Missense_Mutation_p.G1987A|SPG11_uc001zty.1_Missense_Mutation_p.G716A	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	1987	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		GTAGTTCTTCCCATGGAGGCA	0.493													4	113					0	0	3.59834e-05	0	0
SPG11	80208	broad.mit.edu	37	15	44892673	44892673	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:44892673G>T	uc001ztx.2	-	21	3709	c.3678C>A	c.(3676-3678)CCC>CCA	p.P1226P	SPG11_uc010ueh.1_Silent_p.P1226P|SPG11_uc010uei.1_Silent_p.P1226P|SPG11_uc001zty.1_5'UTR	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	1226	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		ACAGCTGCTTGGGAGTCTTGC	0.239													14	202					7.07596e-05	0.000828646	0.00074312	1	0
DUOX1	53905	broad.mit.edu	37	15	45426393	45426393	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:45426393C>T	uc001zus.1	+	5	539	c.193C>T	c.(193-195)CAG>TAG	p.Q65*	DUOX1_uc001zut.1_Nonsense_Mutation_p.Q65*|DUOX1_uc010bee.1_5'UTR	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	65	Peroxidase-like; mediates peroxidase activity.|Extracellular (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		TGGCGTGTACCAGCCCTTGGG	0.617													7	44					0	0	8.12818e-05	0	0
DUOX1	53905	broad.mit.edu	37	15	45454533	45454533	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:45454533G>C	uc001zus.1	+	32	4552	c.4206G>C	c.(4204-4206)CTG>CTC	p.L1402L	DUOX1_uc001zut.1_Silent_p.L1402L|DUOX1_uc010bee.1_Silent_p.L782L	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	1402	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		TCAAAGACCTGGTCTTCAAGT	0.547													4	92					0	0	3.59834e-05	0	0
SLC30A4	7782	broad.mit.edu	37	15	45803367	45803367	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:45803367G>T	uc001zvj.2	-	3	819	c.507C>A	c.(505-507)ACC>ACA	p.T169T	C15orf21_uc001zvk.2_RNA|C15orf21_uc010beg.1_RNA|C15orf21_uc010beh.1_RNA|C15orf21_uc010bei.1_RNA|C15orf21_uc010bej.1_RNA|C15orf21_uc001zvm.1_RNA|C15orf21_uc001zvn.1_RNA	NM_013309	NP_037441	O14863	ZNT4_HUMAN	solute carrier family 30 (zinc transporter),	169	Cytoplasmic (Potential).				regulation of sequestering of zinc ion|response to toxin	endosome membrane|integral to membrane|late endosome	zinc ion transmembrane transporter activity				0		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.58e-16)|GBM - Glioblastoma multiforme(94;2.15e-06)		TGAATCTTTTGGTTGGTGATT	0.373													11	319					0.00010058	0.00115734	0.00010058	1	0
SLC12A1	6557	broad.mit.edu	37	15	48524941	48524941	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:48524941G>T	uc001zwn.3	+	8	1209	c.993G>T	c.(991-993)CTG>CTT	p.L331L	SLC12A1_uc010uew.1_Silent_p.L137L|SLC12A1_uc010bem.2_Silent_p.L331L|SLC12A1_uc010uex.1_Silent_p.L331L|SLC12A1_uc001zwq.3_Silent_p.L102L|SLC12A1_uc001zwr.3_Silent_p.L58L	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	331	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	TCATTCTTCTGGTCATTCTTC	0.338													10	151					0.000151284	0.00173001	0.000151284	1	0
FBN1	2200	broad.mit.edu	37	15	48718018	48718018	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:48718018C>T	uc001zwx.1	-	59	7576	c.7248G>A	c.(7246-7248)GGG>GGA	p.G2416G	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2416	EGF-like 41; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TGACACATTCCCCATTTCGGC	0.323													6	145					0	0	3.59834e-05	0	0
FBN1	2200	broad.mit.edu	37	15	48818348	48818348	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:48818348G>C	uc001zwx.1	-	9	1295	c.967C>G	c.(967-969)CCA>GCA	p.P323A		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	323	EGF-like 5; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GTACCATCTGGAGAGGTGTAA	0.413													3	67					0	0	6.4e-05	0	0
FBN1	2200	broad.mit.edu	37	15	48826340	48826340	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:48826340C>G	uc001zwx.1	-	8	1127	c.799G>C	c.(799-801)GGG>CGG	p.G267R		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	267	EGF-like 4; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TCAAAAGACCCAACAGTATTA	0.428													4	270					0	0	3.59834e-05	0	0
CEP152	22995	broad.mit.edu	37	15	49048114	49048114	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:49048114G>C	uc001zwy.2	-	20	3365	c.3331C>G	c.(3331-3333)CCA>GCA	p.P1111A	CEP152_uc001zwz.2_Missense_Mutation_p.P1111A|CEP152_uc001zxa.1_Missense_Mutation_p.P1018A	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	1111					centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		TTCCATTCTGGGTCAGCGTTT	0.348													5	114					0	0	0.000274275	0	0
CEP152	22995	broad.mit.edu	37	15	49088270	49088270	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:49088270G>C	uc001zwy.2	-	6	662	c.628C>G	c.(628-630)CAG>GAG	p.Q210E	CEP152_uc001zwz.2_Missense_Mutation_p.Q210E|CEP152_uc001zxa.1_Missense_Mutation_p.Q117E	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	210					centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		GTTATCTCCTGGGCTGGTGAG	0.378													4	93					0	0	0.00024832	0	0
COPS2	9318	broad.mit.edu	37	15	49420924	49420924	+	Silent	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:49420924A>G	uc001zxf.2	-	12	1241	c.1162T>C	c.(1162-1164)TTG>CTG	p.L388L	COPS2_uc001zxh.2_Silent_p.L395L|COPS2_uc010ufa.1_Silent_p.L324L	NM_004236	NP_004227	P61201	CSN2_HUMAN	COP9 constitutive photomorphogenic homolog	388	PCI.				cullin deneddylation|transcription from RNA polymerase II promoter	cytoplasm|signalosome	protein binding|signal transducer activity			lung(1)	1		all_lung(180;0.0428)		all cancers(107;1.34e-07)|GBM - Glioblastoma multiforme(94;3.02e-05)		TGCACCAGCAAGCTCTCCACA	0.299													35	223					0	0	0.000374591	0	0
C15orf33	196951	broad.mit.edu	37	15	49860534	49860534	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:49860534C>T	uc001zxl.2	-	9	949	c.655G>A	c.(655-657)GAA>AAA	p.E219K	C15orf33_uc001zxm.2_Intron	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	219										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		TCTTGGTTTTCTCTGTCAGGC	0.308													6	38					0	0	0.000157383	0	0
USP8	9101	broad.mit.edu	37	15	50786460	50786460	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:50786460C>G	uc001zym.3	+	17	3141	c.2641C>G	c.(2641-2643)CAT>GAT	p.H881D	USP8_uc001zyl.3_Missense_Mutation_p.H881D|USP8_uc001zyn.3_Missense_Mutation_p.H881D|USP8_uc010ufh.1_Missense_Mutation_p.H775D|uc001zyo.1_RNA|USP8_uc001zyp.3_Missense_Mutation_p.H48D	NM_001128611	NP_001122083	P40818	UBP8_HUMAN	ubiquitin specific peptidase 8	881					cell cycle|cell proliferation|endosome organization|protein K48-linked deubiquitination|protein K63-linked deubiquitination|ubiquitin-dependent protein catabolic process	cytosol|early endosome|extrinsic to plasma membrane|nucleus	cysteine-type endopeptidase activity|SH3 domain binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(1)|central_nervous_system(1)	2				all cancers(107;0.000225)|GBM - Glioblastoma multiforme(94;0.000771)		GGATGGTCTCCATGAAGATCT	0.348													4	116					0	0	0.000157383	0	0
USP50	373509	broad.mit.edu	37	15	50833406	50833406	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:50833406C>G	uc001zyq.3	-	4	695	c.515G>C	c.(514-516)AGG>ACG	p.R172T		NM_203494	NP_987090	E9PP86	E9PP86_HUMAN	ubiquitin specific protease 50	167					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			lung(1)|breast(1)	2				all cancers(107;0.000519)|GBM - Glioblastoma multiforme(94;0.00288)		AATCCACTTCCTGCAGCATCT	0.403													4	95					0	0	0.000157383	0	0
TRPM7	54822	broad.mit.edu	37	15	50868095	50868095	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:50868095G>C	uc001zyt.3	-	32	4904	c.4640C>G	c.(4639-4641)CCA>CGA	p.P1547R	TRPM7_uc001zyr.2_5'UTR	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	1547	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		ATCCATAGCTGGCTTAAATGG	0.289													5	154					0	0	0.000274275	0	0
LEO1	123169	broad.mit.edu	37	15	52239498	52239498	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:52239498G>C	uc002abo.2	-	11	1903	c.1887C>G	c.(1885-1887)ACC>ACG	p.T629T	LEO1_uc010bfd.2_Silent_p.T569T	NM_138792	NP_620147	Q8WVC0	LEO1_HUMAN	Leo1, Paf1/RNA polymerase II complex component,	629					histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding				0				all cancers(107;0.00264)		CCTCATCACTGGTAAGTTTCT	0.408													4	137					0	0	3.59834e-05	0	0
MYO5C	55930	broad.mit.edu	37	15	52487585	52487585	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:52487585G>C	uc010bff.2	-	40	5202	c.5065C>G	c.(5065-5067)CGC>GGC	p.R1689G	MYO5C_uc010uga.1_RNA|uc002abv.2_Intron	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	1689	Dilute.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TGTACTTTGCGAACAAAGGAT	0.348													4	95					0	0	3.59834e-05	0	0
KIAA1370	56204	broad.mit.edu	37	15	52901041	52901041	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:52901041C>A	uc002acg.3	-	6	2223	c.2070G>T	c.(2068-2070)TTG>TTT	p.L690F	KIAA1370_uc002ach.3_RNA|KIAA1370_uc010bfg.1_Missense_Mutation_p.L602F|KIAA1370_uc010ugf.1_Missense_Mutation_p.L697F	NM_019600	NP_062546	Q32MH5	K1370_HUMAN	hypothetical protein LOC56204	690											0				all cancers(107;0.0803)		CAGACATTTCCAACACAGTAA	0.294													11	214					0.000673444	0.00655963	0.000673444	1	0
WDR72	256764	broad.mit.edu	37	15	53998248	53998248	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:53998248C>T	uc002acj.2	-	10	1020	c.978G>A	c.(976-978)ATG>ATA	p.M326I	WDR72_uc010bfi.1_Missense_Mutation_p.M326I	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	326	WD 4.									lung(1)|skin(1)	2				all cancers(107;0.0511)		TCATGTAGCCCATAACAAAGG	0.388													7	71					0	0	0.000442599	0	0
WDR72	256764	broad.mit.edu	37	15	54003535	54003535	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:54003535G>T	uc002acj.2	-	8	897	c.855C>A	c.(853-855)AAC>AAA	p.N285K	WDR72_uc010bfi.1_Missense_Mutation_p.N285K	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	285										lung(1)|skin(1)	2				all cancers(107;0.0511)		GAGCCCACCTGTTCAGCAGCT	0.453													6	112					0.000978159	0.00917326	0.000978159	1	0
UNC13C	440279	broad.mit.edu	37	15	54306001	54306001	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:54306001G>A	uc002ack.2	+	1	901	c.901G>A	c.(901-903)GAA>AAA	p.E301K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	301					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GTCTCGGAGGGAAACTAGAGA	0.428													21	103					0	0	0.000375601	0	0
PIGB	9488	broad.mit.edu	37	15	55613524	55613524	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:55613524C>A	uc002act.2	+	3	669	c.353C>A	c.(352-354)CCC>CAC	p.P118H	uc002acs.2_5'Flank|PIGB_uc010ugg.1_Intron	NM_004855	NP_004846	Q92521	PIGB_HUMAN	phosphatidylinositol glycan, class B	118					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	integral to membrane|intrinsic to endoplasmic reticulum membrane	glycolipid mannosyltransferase activity				0				all cancers(107;0.0255)		TACACTTATCCCTTAATCTTT	0.323													7	71					0.000442599	0.00445669	0.000442599	1	0
CCPG1	9236	broad.mit.edu	37	15	55657424	55657425	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:55657424_55657425GG>TT	uc002acv.1	-	7	954_955	c.789_790CC>AA	c.(787-792)TCCCAG>TCAAAG	p.Q264K	CCPG1_uc002acy.2_Missense_Mutation_p.Q264K|CCPG1_uc002acu.1_Missense_Mutation_p.Q120K|CCPG1_uc002acw.1_Intron|CCPG1_uc002acx.2_Missense_Mutation_p.Q264K|CCPG1_uc010bfk.1_Missense_Mutation_p.Q264K|CCPG1_uc002acz.1_Missense_Mutation_p.Q264K	NM_020739	NP_065790	Q9ULG6	CCPG1_HUMAN	cell cycle progression 1 isoform 2	264	Lumenal (Potential).|Potential.|Interaction with MCF2L and SRC (By similarity).				cell cycle	integral to membrane				ovary(1)	1				all cancers(107;0.0354)		TGTTGACACTGGGAAAGATAAT	0.282													11	342					0	0	6.4e-05	0	0
PYGO1	26108	broad.mit.edu	37	15	55838465	55838466	+	Missense_Mutation	DNP	GG	TC	TC			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:55838465_55838466GG>TC	uc010bfl.1	-	3	1071_1072	c.1015_1016CC>GA	c.(1015-1017)CCA>GAA	p.P339E	PYGO1_uc002adf.1_Missense_Mutation_p.P339E	NM_015617	NP_056432	Q9Y3Y4	PYGO1_HUMAN	pygopus homolog 1	339					Wnt receptor signaling pathway	nucleus	zinc ion binding			ovary(1)|skin(1)	2				all cancers(107;0.0131)|GBM - Glioblastoma multiforme(80;0.18)		AGGATACACTGGGTCAGAAGAC	0.465													9	170					0	0	6.4e-05	0	0
NEDD4	4734	broad.mit.edu	37	15	56142741	56142741	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:56142741C>G	uc002adj.2	-	10	2903	c.2603G>C	c.(2602-2604)TGG>TCG	p.W868S	NEDD4_uc002adl.2_Missense_Mutation_p.W449S|NEDD4_uc002adi.2_Missense_Mutation_p.W796S|NEDD4_uc010ugj.1_Missense_Mutation_p.W852S|NEDD4_uc010bfm.2_Missense_Mutation_p.W851S|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	868	Mediates interaction with TNIK (By similarity).|WW 3.				development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		CAAAGTTACCCAGGTGGTGGT	0.353													5	326					0	0	0.000157383	0	0
RFX7	64864	broad.mit.edu	37	15	56386412	56386412	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:56386412G>C	uc010bfn.2	-	9	3514	c.3514C>G	c.(3514-3516)CAT>GAT	p.H1172D	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Missense_Mutation_p.H986D	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	1075					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						CGTTGGCGATGAACAGCAGGG	0.483													3	105					0	0	6.4e-05	0	0
ADAM10	102	broad.mit.edu	37	15	58974480	58974480	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:58974480G>C	uc002afd.1	-	3	684	c.240C>G	c.(238-240)TCC>TCG	p.S80S	ADAM10_uc010bgc.1_RNA|ADAM10_uc010ugz.1_Intron|ADAM10_uc002afe.1_Intron|ADAM10_uc002afg.2_Silent_p.S80S	NM_001110	NP_001101	O14672	ADA10_HUMAN	ADAM metallopeptidase domain 10 precursor	80	Extracellular (Potential).				cell-cell signaling|constitutive protein ectodomain proteolysis|epidermal growth factor receptor signaling pathway|in utero embryonic development|integrin-mediated signaling pathway|monocyte activation|negative regulation of cell adhesion|Notch receptor processing|Notch signaling pathway|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of T cell chemotaxis|protein phosphorylation|response to tumor necrosis factor	cell surface|endomembrane system|Golgi-associated vesicle|integral to membrane|nucleus|plasma membrane	integrin binding|metalloendopeptidase activity|protein homodimerization activity|protein kinase binding|SH3 domain binding|zinc ion binding			skin(2)	2				GBM - Glioblastoma multiforme(80;0.202)		CACTGAAAAGGGAAGTGTCCC	0.313													4	142					0	0	3.59834e-05	0	0
CCNB2	9133	broad.mit.edu	37	15	59407060	59407060	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:59407060G>T	uc002afz.2	+	5	730	c.582G>T	c.(580-582)ATG>ATT	p.M194I	CCNB2_uc010bge.2_Missense_Mutation_p.M113I	NM_004701	NP_004692	O95067	CCNB2_HUMAN	cyclin B2	194					cell cycle checkpoint|cell division|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	centrosome|cytosol|nucleus	protein kinase binding				0						TTGGCATTATGGATCGATTTT	0.473													13	287					0.000958276	0.00917326	0.000958276	1	0
NARG2	79664	broad.mit.edu	37	15	60745926	60745926	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:60745926G>T	uc002agp.2	-	9	1236	c.1001C>A	c.(1000-1002)ACT>AAT	p.T334N	NARG2_uc002ago.2_Missense_Mutation_p.T197N|NARG2_uc002agq.3_Missense_Mutation_p.T2N|NARG2_uc010bgk.2_Missense_Mutation_p.T334N|NARG2_uc002agr.1_Missense_Mutation_p.T334N	NM_024611	NP_078887	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2 isoform a	334						nucleus				ovary(1)|lung(1)	2						CTCTCTCATAGTCATTTTCTT	0.313													6	156					0.000274275	0.00290969	0.000274275	1	0
VPS13C	54832	broad.mit.edu	37	15	62214814	62214814	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:62214814C>G	uc002agz.2	-	54	6831	c.6757G>C	c.(6757-6759)GGT>CGT	p.G2253R	VPS13C_uc002aha.2_Missense_Mutation_p.G2210R|VPS13C_uc002ahb.1_Missense_Mutation_p.G2253R|VPS13C_uc002ahc.1_Missense_Mutation_p.G2210R	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	2253					protein localization					ovary(2)	2						GTGTCAACACCAAGAAACCAA	0.363													4	206					0	0	0.00024832	0	0
MTFMT	123263	broad.mit.edu	37	15	65319171	65319171	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:65319171G>T	uc002aof.3	-	2	443	c.417C>A	c.(415-417)CCC>CCA	p.P139P		NM_139242	NP_640335	Q96DP5	FMT_HUMAN	mitochondrial methionyl-tRNA formyltransferase	139						mitochondrion	methionyl-tRNA formyltransferase activity|methyltransferase activity			ovary(2)	2					Tetrahydrofolic acid(DB00116)	AAACTTACTAGGGAAATTTAA	0.363													7	131					0.000274275	0.00290969	0.000274275	1	0
CLPX	10845	broad.mit.edu	37	15	65471350	65471350	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:65471350C>A	uc002aom.2	-	3	352	c.280G>T	c.(280-282)GGG>TGG	p.G94W	CLPX_uc010uiu.1_RNA|CLPX_uc010bhg.1_Missense_Mutation_p.G94W	NM_006660	NP_006651	O76031	CLPX_HUMAN	ClpX caseinolytic protease X homolog precursor	94					protein folding|proteolysis involved in cellular protein catabolic process	mitochondrial endopeptidase Clp complex|mitochondrial inner membrane|mitochondrial nucleoid	ATP binding|ATPase activity|metal ion binding|peptidase activator activity|unfolded protein binding				0						CCAGAATTCCCAGAGCCTGAT	0.413													10	129					0.000442599	0.00445669	0.000442599	1	0
IGDCC4	57722	broad.mit.edu	37	15	65703658	65703658	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:65703658C>G	uc002aou.1	-	2	331	c.121G>C	c.(121-123)GGG>CGG	p.G41R		NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	41	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						TGCAGTGGCCCCACTCCACAG	0.652													3	33					0	0	0.00024832	0	0
DPP8	54878	broad.mit.edu	37	15	65748614	65748614	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:65748614C>G	uc002aov.2	-	16	3693	c.2115G>C	c.(2113-2115)AGG>AGC	p.R705S	DPP8_uc002aow.2_Missense_Mutation_p.R705S|DPP8_uc010uiv.1_RNA|DPP8_uc002aox.2_Missense_Mutation_p.R689S|DPP8_uc002aoy.2_Missense_Mutation_p.R705S|DPP8_uc002aoz.2_Intron|DPP8_uc010bhj.2_Missense_Mutation_p.R705S|DPP8_uc002apa.2_Intron|DPP8_uc010bhi.2_Intron|DPP8_uc010bhk.1_Missense_Mutation_p.R274S	NM_130434	NP_569118	Q6V1X1	DPP8_HUMAN	dipeptidyl peptidase 8 isoform 1	705					immune response|proteolysis	cytoplasm|membrane|nucleus	aminopeptidase activity|dipeptidyl-peptidase activity|serine-type peptidase activity			ovary(1)	1						GACAGGATCCCCTGTTGTCTA	0.403													4	145					0	0	0.00024832	0	0
IQCH	64799	broad.mit.edu	37	15	67636434	67636434	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:67636434C>A	uc002aqo.1	+	6	589	c.542C>A	c.(541-543)CCA>CAA	p.P181Q	IQCH_uc010ujv.1_Missense_Mutation_p.P13Q|IQCH_uc002aqn.1_Missense_Mutation_p.P8Q|IQCH_uc002aqq.1_Intron|IQCH_uc002aqp.1_5'UTR	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	181										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		GGGCTGATTCCACCAACAGCA	0.388													6	90					0.000157383	0.00173811	0.000157383	1	0
MAP2K5	5607	broad.mit.edu	37	15	67985858	67985858	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:67985858G>T	uc002aqu.2	+	15	1577	c.924G>T	c.(922-924)CTG>CTT	p.L308L	MAP2K5_uc002aqv.2_Silent_p.L308L|MAP2K5_uc002aqw.2_Silent_p.L148L|MAP2K5_uc002aqx.2_Silent_p.L118L	NM_145160	NP_660143	Q13163	MP2K5_HUMAN	mitogen-activated protein kinase kinase 5	308	Protein kinase.				nerve growth factor receptor signaling pathway		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)	2						TCTCATAGCTGGTGAATTCTA	0.294													7	165					0.000442599	0.00445669	0.000442599	1	0
NOX5	79400	broad.mit.edu	37	15	69329425	69329427	+	Missense_Mutation	TNP	GGG	TTT	TTT	rs139472034		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:69329425_69329427GGG>TTT	uc002ars.1	+	8	1266_1268	c.1246_1248GGG>TTT	c.(1246-1248)GGG>TTT	p.G416F	NOX5_uc002arp.1_Missense_Mutation_p.G398F|NOX5_uc002arq.1_Missense_Mutation_p.G370F|NOX5_uc010bid.1_Missense_Mutation_p.G381F|NOX5_uc002arr.1_Missense_Mutation_p.G388F|NOX5_uc010bie.1_Missense_Mutation_p.G216F|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	416	Helical; (Potential).|Ferric oxidoreductase.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						CATCTTTCATGGGCCCAACTTCT	0.571													9	181					0	0	6.4e-05	0	0
MYO9A	4649	broad.mit.edu	37	15	72190887	72190887	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:72190887C>G	uc002atl.3	-	25	4430	c.3957G>C	c.(3955-3957)CGG>CGC	p.R1319R	MYO9A_uc010biq.2_Silent_p.R939R|MYO9A_uc002atn.1_Silent_p.R1300R|MYO9A_uc002atk.2_Silent_p.R43R|MYO9A_uc002atm.1_Silent_p.R43R	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1319	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						CAGGTGTACCCCGTGGAGACT	0.468													4	154					0	0	8.12818e-05	0	0
MYO9A	4649	broad.mit.edu	37	15	72313284	72313284	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:72313284G>C	uc002atl.3	-	5	1546	c.1073C>G	c.(1072-1074)CCA>CGA	p.P358R	MYO9A_uc010biq.2_5'UTR|MYO9A_uc002ato.2_Missense_Mutation_p.P358R|MYO9A_uc002atn.1_Missense_Mutation_p.P358R	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	358	Myosin head-like 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						ATATTCCTCTGGTTGCTTAAG	0.353													4	88					0	0	3.59834e-05	0	0
SENP8	123228	broad.mit.edu	37	15	72432142	72432142	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:72432142C>T	uc002atp.2	+	2	277	c.178C>T	c.(178-180)CAG>TAG	p.Q60*		NM_145204	NP_660205	Q96LD8	SENP8_HUMAN	SUMO/sentrin specific peptidase family member 8	60	Protease.				proteolysis		cysteine-type peptidase activity|protein binding			ovary(1)|skin(1)	2						TGAAGTCACCCAGTTCATCAA	0.448													6	194					0	0	3.59834e-05	0	0
PARP6	56965	broad.mit.edu	37	15	72543579	72543579	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:72543579C>G	uc002auc.2	-	16	1736	c.1277G>C	c.(1276-1278)AGG>ACG	p.R426T	PARP6_uc002aua.2_Missense_Mutation_p.R271T|PARP6_uc002aub.2_RNA|PARP6_uc002aud.3_RNA|PARP6_uc002auf.1_Missense_Mutation_p.R426T	NM_020214	NP_064599	Q2NL67	PARP6_HUMAN	poly (ADP-ribose) polymerase family, member 6	426	PARP catalytic.						NAD+ ADP-ribosyltransferase activity				0						AATGTGTGACCTGTTGCTAGA	0.428													4	168					0	0	3.59834e-05	0	0
PARP6	56965	broad.mit.edu	37	15	72554019	72554019	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:72554019C>A	uc002auc.2	-	8	884	c.425G>T	c.(424-426)TGG>TTG	p.W142L	PARP6_uc002aua.2_Missense_Mutation_p.W7L|PARP6_uc002aub.2_RNA|PARP6_uc002aud.3_RNA|PARP6_uc002auf.1_Missense_Mutation_p.W142L	NM_020214	NP_064599	Q2NL67	PARP6_HUMAN	poly (ADP-ribose) polymerase family, member 6	142							NAD+ ADP-ribosyltransferase activity				0						CAGATGTTTCCATTGTTGGGA	0.463													12	245					0.000422831	0.00445499	0.000422831	1	0
NEO1	4756	broad.mit.edu	37	15	73409065	73409065	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:73409065G>A	uc002avm.3	+	2	457	c.315G>A	c.(313-315)CCG>CCA	p.P105P	NEO1_uc010ukx.1_Silent_p.P105P|NEO1_uc010uky.1_Silent_p.P105P|NEO1_uc010ukz.1_5'UTR	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	105	Extracellular (Potential).|Ig-like C2-type 1.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						AGCTTCTCCCGGATGGATCTT	0.383													14	167					0	0	0.000219431	0	0
NEO1	4756	broad.mit.edu	37	15	73575396	73575396	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:73575396G>C	uc002avm.3	+	23	3496	c.3354G>C	c.(3352-3354)GTG>GTC	p.V1118V	NEO1_uc010ukx.1_Silent_p.V1107V|NEO1_uc010uky.1_Silent_p.V1118V|NEO1_uc010ukz.1_Silent_p.V531V|NEO1_uc002avn.3_Silent_p.V756V	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	1118	Helical; (Potential).|Poly-Val.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						TCACCATCGTGGTGGTTGTGA	0.493													6	263					0	0	3.59834e-05	0	0
HCN4	10021	broad.mit.edu	37	15	73617339	73617339	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:73617339C>G	uc002avp.2	-	6	2929	c.1935G>C	c.(1933-1935)AAG>AAC	p.K645N		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	645	Cytoplasmic (Potential).|cAMP.				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		CCTTGTTGCCCTTGGTGAGCA	0.617													4	81					0	0	0.000602214	0	0
CYP1A2	1544	broad.mit.edu	37	15	75044579	75044579	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:75044579T>C	uc002ayr.1	+	5	1221	c.1157T>C	c.(1156-1158)ATC>ACC	p.I386T		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	386			I -> F (in allele CYP1A2*4; increases catalytic efficiency of N-hydroxylation towards some heterocyclic amines and reduces towards others; reduces catalytic efficiency of phenacetin O-deethylation due to a high decrease in the affinity for phenacetin).		alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	CCCTTCACCATCCCCCACAGG	0.622													5	257					0	0	0.000308642	0	0
MAN2C1	4123	broad.mit.edu	37	15	75652945	75652945	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:75652945G>A	uc002baf.2	-	13	1562	c.1545C>T	c.(1543-1545)TTC>TTT	p.F515F	MAN2C1_uc002bag.2_Silent_p.F515F|MAN2C1_uc002bah.2_Silent_p.F515F|MAN2C1_uc010bkk.2_Silent_p.F416F|MAN2C1_uc010umi.1_Silent_p.F297F	NM_006715	NP_006706	Q9NTJ4	MA2C1_HUMAN	mannosidase, alpha, class 2C, member 1	515					mannose metabolic process		alpha-mannosidase activity|carbohydrate binding|protein binding|zinc ion binding				0						GCAGCTCCAAGAAGAGCTCCC	0.587													15	68					0	0	0.000566183	0	0
TBC1D2B	23102	broad.mit.edu	37	15	78317735	78317735	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:78317735C>A	uc002bcy.3	-	5	952	c.952G>T	c.(952-954)GGT>TGT	p.G318C	TBC1D2B_uc010bla.2_Missense_Mutation_p.G318C	NM_144572	NP_653173	Q9UPU7	TBD2B_HUMAN	TBC1 domain family, member 2B isoform a	318						intracellular	protein binding|Rab GTPase activator activity			ovary(1)|large_intestine(1)|breast(1)	3						GAAGGGTCACCACTGCTGTGA	0.522													6	86					0.000442599	0.00445669	0.000442599	1	0
IREB2	3658	broad.mit.edu	37	15	78732179	78732179	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:78732179C>A	uc002bdr.2	+	2	224	c.62C>A	c.(61-63)TCA>TAA	p.S21*	IREB2_uc010unb.1_5'UTR|IREB2_uc002bdq.2_Nonsense_Mutation_p.S21*	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	21							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		AATGACAGTTCACATAAGAAG	0.299													7	119					0.000978159	0.00917326	0.000978159	1	0
IREB2	3658	broad.mit.edu	37	15	78768633	78768633	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:78768633C>G	uc002bdr.2	+	9	1289	c.1127C>G	c.(1126-1128)CCG>CGG	p.P376R	IREB2_uc010unb.1_Missense_Mutation_p.P126R	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	376							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		AACATGTGTCCGGAATATGGT	0.363													4	108					0	0	0.000602214	0	0
KIAA1024	23251	broad.mit.edu	37	15	79748810	79748810	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:79748810G>A	uc002bew.1	+	2	396	c.321G>A	c.(319-321)ACG>ACA	p.T107T	KIAA1024_uc010unk.1_Silent_p.T107T	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	107						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						AGCTGCCCACGGGCCGCCAGA	0.512													5	92					0	0	0.000602214	0	0
KIAA1199	57214	broad.mit.edu	37	15	81171147	81171147	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:81171147G>C	uc002bfw.1	+	3	440	c.180G>C	c.(178-180)CAG>CAC	p.Q60H	KIAA1199_uc010unn.1_Missense_Mutation_p.Q60H	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	60	G8.									upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						ATATCGGCCAGGGCAAGACAC	0.587													4	100					0	0	0.00024832	0	0
C15orf26	161502	broad.mit.edu	37	15	81440239	81440239	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:81440239G>C	uc002bgb.2	+	6	704	c.677G>C	c.(676-678)CGG>CCG	p.R226P		NM_173528	NP_775799	Q6P656	CO026_HUMAN	hypothetical protein LOC161502	226											0						CACACAAATCGGGGACTGGCA	0.378													4	74					0	0	0.000157383	0	0
IL16	3603	broad.mit.edu	37	15	81598278	81598278	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:81598278C>A	uc002bgh.3	+	17	3826	c.3450C>A	c.(3448-3450)GCC>GCA	p.A1150A	IL16_uc010blq.1_Silent_p.A1104A|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Silent_p.A1192A|IL16_uc002bgg.2_Silent_p.A1150A|IL16_uc002bgi.1_Silent_p.A540A|IL16_uc002bgj.2_Silent_p.A644A|IL16_uc002bgk.2_Silent_p.A449A|IL16_uc002bgl.1_Silent_p.A449A|IL16_uc010unq.1_Silent_p.A449A	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	1150	PDZ 3.|Interaction with PPP1R12A, PPP1R12B and PPP1R12C.				immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						ATGGGCTGGCCTCCCAGGAAG	0.527													8	235					0.000442599	0.00445669	0.000442599	1	0
AP3B2	8120	broad.mit.edu	37	15	83349718	83349718	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:83349718G>T	uc010uoh.1	-	7	819	c.642C>A	c.(640-642)ATC>ATA	p.I214I	AP3B2_uc010uoi.1_Silent_p.I214I|AP3B2_uc010uoj.1_Silent_p.I182I|AP3B2_uc010uog.1_5'Flank	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	214					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			GAATCAGGTCGATGCGCTCCG	0.592													4	47					3.59834e-05	0.000429	3.59834e-05	1	0
FSD2	123722	broad.mit.edu	37	15	83451711	83451711	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:83451711G>T	uc002bjd.2	-	4	969	c.802C>A	c.(802-804)CAA>AAA	p.Q268K	FSD2_uc010uol.1_Missense_Mutation_p.Q268K|FSD2_uc010uom.1_Missense_Mutation_p.Q268K	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	268	Potential.									central_nervous_system(1)	1						TCATATTTTTGAGCAAGTGTT	0.388													11	444					3.45872e-05	0.000417197	0.000422831	1	0
TM6SF1	53346	broad.mit.edu	37	15	83805391	83805391	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:83805391C>A	uc002bjp.2	+	10	1189	c.1080C>A	c.(1078-1080)TTC>TTA	p.F360L	TM6SF1_uc010bmq.2_Missense_Mutation_p.F329L|TM6SF1_uc002bjq.2_3'UTR|TM6SF1_uc010bmr.2_RNA|TM6SF1_uc002bjr.2_Missense_Mutation_p.F212L	NM_023003	NP_075379	Q9BZW5	TM6S1_HUMAN	transmembrane 6 superfamily member 1 isoform 1	360						integral to membrane				ovary(1)	1						CAGAGTTCTTCATAAAAACAA	0.328													8	212					0.000978159	0.00917326	0.000978159	1	0
Unknown	0	broad.mit.edu	37	15	84945337	84945337	+	RNA	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:84945337C>T	uc002bke.1	-	1		c.1881G>A								Homo sapiens cDNA FLJ34196 fis, clone FCBBF3019437.																		CACACACCCCCACCAGCCCTA	0.607													4	37					0	0	0.00024832	0	0
AKAP13	11214	broad.mit.edu	37	15	86189164	86189164	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:86189164G>C	uc002blv.1	+	10	4523	c.4353G>C	c.(4351-4353)ATG>ATC	p.M1451I	AKAP13_uc002blt.1_Missense_Mutation_p.M1451I|AKAP13_uc002blu.1_Missense_Mutation_p.M1451I|AKAP13_uc010bnf.1_Missense_Mutation_p.M91I|AKAP13_uc010bne.1_Missense_Mutation_p.M104I	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	1451					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						GTGATGACATGGACAGCATCA	0.448													5	158					0	0	3.59834e-05	0	0
FANCI	55215	broad.mit.edu	37	15	89804908	89804908	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:89804908G>T	uc010bnp.1	+	5	471	c.381G>T	c.(379-381)TTG>TTT	p.L127F	FANCI_uc002bnm.1_Missense_Mutation_p.L127F|FANCI_uc002bnn.1_RNA|FANCI_uc002bno.2_Missense_Mutation_p.L127F|FANCI_uc002bnp.1_5'Flank	NM_001113378	NP_001106849	Q9NVI1	FANCI_HUMAN	Fanconi anemia, complementation group I isoform	127					cell cycle|DNA repair	nucleoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					GAAAATCTTTGGAGTTACTAC	0.393								Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				8	204					2.17888e-05	0.000264662	0.000442599	1	0
ZNF710	374655	broad.mit.edu	37	15	90617430	90617430	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:90617430C>G	uc002bov.1	+	4	1856	c.1733C>G	c.(1732-1734)CCC>CGC	p.P578R		NM_198526	NP_940928	Q8N1W2	ZN710_HUMAN	zinc finger protein 710	578	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	Melanoma(11;0.00551)|Lung NSC(78;0.0196)|all_lung(78;0.04)		BRCA - Breast invasive adenocarcinoma(143;0.00769)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.129)			TTCAAGTGCCCCTACTGCTCC	0.587													5	81					0	0	0.000157383	0	0
IDH2	3418	broad.mit.edu	37	15	90630742	90630742	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:90630742C>G	uc002box.2	-	6	830	c.744G>C	c.(742-744)ATG>ATC	p.M248I	IDH2_uc010uqb.1_Missense_Mutation_p.M196I|IDH2_uc010uqc.1_Missense_Mutation_p.M118I|IDH2_uc010bnu.2_Missense_Mutation_p.M139I	NM_002168	NP_002159	P48735	IDHP_HUMAN	isocitrate dehydrogenase 2 (NADP+),	248					2-oxoglutarate metabolic process|glyoxylate cycle|isocitrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding			haematopoietic_and_lymphoid_tissue(621)|central_nervous_system(80)|bone(7)|skin(3)	711	Melanoma(11;0.00551)|Lung NSC(78;0.0196)|all_lung(78;0.04)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.106)			TCTTGGTGCTCATGTACAGCG	0.537			M		GBM						OREG0023466	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	144					0	0	3.59834e-05	0	0
CRTC3	64784	broad.mit.edu	37	15	91169054	91169054	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:91169054G>T	uc002bpp.2	+	10	902	c.796G>T	c.(796-798)GGG>TGG	p.G266W	CRTC3_uc002bpo.2_Missense_Mutation_p.G266W	NM_022769	NP_073606	Q6UUV7	CRTC3_HUMAN	transducer of regulated CREB protein 3 isoform	266					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus			CRTC3/MAML2(26)	salivary_gland(26)|ovary(1)	27	Melanoma(11;0.00551)|Lung NSC(78;0.0931)|all_lung(78;0.163)		BRCA - Breast invasive adenocarcinoma(143;0.0745)			ACCCTTCTTGGGGACCTTGAA	0.488			T	MAML2	salivary gland mucoepidermoid								9	307					0.000151284	0.00173001	0.000151284	1	0
BLM	641	broad.mit.edu	37	15	91293220	91293220	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:91293220G>T	uc002bpr.2	+	3	819	c.722G>T	c.(721-723)GGC>GTC	p.G241V	BLM_uc010uqh.1_Missense_Mutation_p.G241V|BLM_uc010uqi.1_5'UTR|BLM_uc010bnx.2_Missense_Mutation_p.G241V	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	241					double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			ATCGATGATGGCCCCATTGCT	0.408			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				8	459					6.40141e-05	0.00075092	0.000978159	1	0
BLM	641	broad.mit.edu	37	15	91306383	91306383	+	Silent	SNP	G	C	C	rs148078150		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:91306383G>C	uc002bpr.2	+	8	2167	c.2070G>C	c.(2068-2070)CCG>CCC	p.P690P	BLM_uc010uqh.1_Silent_p.P690P|BLM_uc010uqi.1_Silent_p.P315P|BLM_uc010bnx.2_Silent_p.P690P|BLM_uc002bps.1_Silent_p.P252P	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	690	ATP (By similarity).|Helicase ATP-binding.				double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			TCCTGATGCCGACTGGTATGT	0.358			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				4	352					0	0	3.59834e-05	0	0
BLM	641	broad.mit.edu	37	15	91326156	91326156	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:91326156C>G	uc002bpr.2	+	13	2757	c.2660C>G	c.(2659-2661)CCA>CGA	p.P887R	BLM_uc010uqh.1_Missense_Mutation_p.P887R|BLM_uc010uqi.1_Missense_Mutation_p.P512R|BLM_uc010bnx.2_Missense_Mutation_p.P887R|BLM_uc002bps.1_Missense_Mutation_p.P449R	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	887	Helicase C-terminal.				double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			AAGCACCACCCATGTGAGTAC	0.343			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				5	343					0	0	0.000442599	0	0
UNC45A	55898	broad.mit.edu	37	15	91491413	91491413	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:91491413G>C	uc002bqg.2	+	12	1977	c.1637G>C	c.(1636-1638)TGG>TCG	p.W546S	UNC45A_uc002bqd.2_Missense_Mutation_p.W531S|UNC45A_uc010uqr.1_5'UTR|UNC45A_uc002bqi.2_5'Flank	NM_018671	NP_061141	Q9H3U1	UN45A_HUMAN	smooth muscle cell associated protein-1 isoform	546					cell differentiation|muscle organ development	nucleus|perinuclear region of cytoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			ACTCGGCGCTGGGCAGTGGAG	0.607													6	383					0	0	0.000442599	0	0
UNC45A	55898	broad.mit.edu	37	15	91492571	91492571	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:91492571G>A	uc002bqg.2	+	14	2244	c.1904G>A	c.(1903-1905)CGG>CAG	p.R635Q	UNC45A_uc002bqd.2_Missense_Mutation_p.R620Q|UNC45A_uc010uqr.1_Missense_Mutation_p.R27Q|UNC45A_uc002bqi.2_5'UTR	NM_018671	NP_061141	Q9H3U1	UN45A_HUMAN	smooth muscle cell associated protein-1 isoform	635					cell differentiation|muscle organ development	nucleus|perinuclear region of cytoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			GTGCGGGCTCGGGTGAAGAAG	0.617													6	220					0	0	0.000157383	0	0
PRC1	9055	broad.mit.edu	37	15	91517390	91517390	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:91517390G>T	uc002bqm.2	-	11	1594	c.1437C>A	c.(1435-1437)CCC>CCA	p.P479P	PRC1_uc002bqn.2_Silent_p.P479P|PRC1_uc002bqo.2_Silent_p.P479P|PRC1_uc010uqs.1_Silent_p.P438P	NM_003981	NP_003972	O43663	PRC1_HUMAN	protein regulator of cytokinesis 1 isoform 1	479	Unstructured, Arg/Lys rich.				cytokinesis|mitotic spindle elongation	cytoplasm|nucleus|spindle microtubule|spindle pole	protein binding			ovary(1)|skin(1)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					CCGGTGTATTGGGAGCCAGTC	0.493													9	327					3.07112e-06	3.84493e-05	0.000978159	1	0
LRRC28	123355	broad.mit.edu	37	15	99828050	99828050	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:99828050G>T	uc002bva.1	+	5	434	c.279G>T	c.(277-279)CTG>CTT	p.L93L	LRRC28_uc010urs.1_RNA|LRRC28_uc002bvb.1_5'UTR|LRRC28_uc010urt.1_5'UTR|LRRC28_uc002bvc.1_Silent_p.L93L|LRRC28_uc010uru.1_Silent_p.L93L|LRRC28_uc002bvd.1_Intron	NM_144598	NP_653199	Q86X40	LRC28_HUMAN	leucine rich repeat containing 28	93	LRR 4.										0	Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00106)			TCCAATGTCTGGATCTTAGTG	0.373													9	193					0.000219431	0.00241088	0.000219431	1	0
LRRC28	123355	broad.mit.edu	37	15	99892666	99892666	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:99892666G>A	uc002bva.1	+	7	840	c.685G>A	c.(685-687)GGG>AGG	p.G229R	LRRC28_uc010urs.1_RNA|LRRC28_uc002bvb.1_Missense_Mutation_p.G75R|LRRC28_uc010urt.1_Missense_Mutation_p.G43R|LRRC28_uc002bvc.1_Missense_Mutation_p.G229R|LRRC28_uc010uru.1_Missense_Mutation_p.G160R|LRRC28_uc002bvd.1_Intron	NM_144598	NP_653199	Q86X40	LRC28_HUMAN	leucine rich repeat containing 28	229											0	Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00106)			TAAAGTCATCGGGTGCAGTGG	0.373													5	120					0	0	0.000602214	0	0
LASS3	204219	broad.mit.edu	37	15	101031074	101031074	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:101031074G>T	uc002bvz.2	-	5	738	c.236C>A	c.(235-237)CCA>CAA	p.P79Q	LASS3_uc002bwa.2_Missense_Mutation_p.P90Q|LASS3_uc002bwb.2_Missense_Mutation_p.P79Q	NM_178842	NP_849164	Q8IU89	CERS3_HUMAN	LAG1 longevity assurance homolog 3	79	Homeobox.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4	Lung NSC(78;0.0018)|all_lung(78;0.00278)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000867)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)			GACAGTATTTGGTGTAACCTT	0.299													10	95					0.000978159	0.00917326	0.000978159	1	0
WASH3P	374666	broad.mit.edu	37	15	102515299	102515299	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:102515299G>A	uc002cdi.2	+	9	1943	c.523G>A	c.(523-525)GGC>AGC	p.G175S	WASH3P_uc002cdl.2_Missense_Mutation_p.G175S|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.G175S|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						TGGGGGCATCGGCAAGGCCAA	0.652													4	23					0	0	0.00024832	0	0
IFT140	9742	broad.mit.edu	37	16	1570774	1570774	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:1570774G>T	uc002cmb.2	-	27	3851	c.3489C>A	c.(3487-3489)AAC>AAA	p.N1163K	IFT140_uc002clz.2_Missense_Mutation_p.N776K	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	1163										ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				TGATGCTCATGTTCTGCCCCA	0.632													4	34					0.000157383	0.00173811	0.000157383	1	0
EME2	197342	broad.mit.edu	37	16	1823473	1823473	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:1823473C>T	uc002cmq.1	+	1	245	c.245C>T	c.(244-246)ACA>ATA	p.T82I	NME3_uc002cmm.2_5'Flank|NME3_uc010brv.2_5'Flank|MRPS34_uc002cmn.2_5'Flank|MRPS34_uc002cmo.2_5'Flank|MRPS34_uc002cmp.1_5'Flank|EME2_uc010brw.1_Missense_Mutation_p.T82I	NM_001010865	NP_001010865	A4GXA9	EME2_HUMAN	essential meiotic endonuclease 1 homolog 2	82					DNA recombination|DNA repair	nucleus	DNA binding|endonuclease activity			lung(1)|central_nervous_system(1)|pancreas(1)	3						TGCGTGGACACAGGTGCGGCG	0.642								Direct_reversal_of_damage|Homologous_recombination					4	15					0	0	0.000157383	0	0
TRAF7	84231	broad.mit.edu	37	16	2222336	2222336	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:2222336C>T	uc002cow.2	+	8	719	c.620C>T	c.(619-621)CCC>CTC	p.P207L		NM_032271	NP_115647	Q6Q0C0	TRAF7_HUMAN	TNF receptor-associated factor 7	207					activation of MAPKKK activity|apoptosis|regulation of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic membrane-bounded vesicle|ubiquitin ligase complex	identical protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						GAGGTGGACCCCCGAGGGTGC	0.682													4	25					0	0	3.59834e-05	0	0
CASKIN1	57524	broad.mit.edu	37	16	2230323	2230323	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:2230323C>T	uc010bsg.1	-	18	3078	c.3046G>A	c.(3046-3048)GGG>AGG	p.G1016R		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	1016	Pro-rich.				signal transduction	cytoplasm				skin(2)	2						GCCCGGCCCCCACCCCCAATG	0.731													3	5					0	0	0.00024832	0	0
PDPK1	5170	broad.mit.edu	37	16	2636891	2636891	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:2636891C>G	uc002cqs.2	+	11	1484	c.1340C>G	c.(1339-1341)CCT>CGT	p.P447R	PDPK1_uc002cqt.2_Missense_Mutation_p.P320R|PDPK1_uc010bsn.2_Missense_Mutation_p.P447R|PDPK1_uc002cqu.2_Missense_Mutation_p.P420R	NM_002613	NP_002604	O15530	PDPK1_HUMAN	3-phosphoinositide dependent protein kinase-1	447					actin cytoskeleton organization|activation of protein kinase B activity|insulin receptor signaling pathway|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|peptidyl-threonine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|synaptic transmission|T cell costimulation|T cell receptor signaling pathway	cytosol|nucleoplasm|plasma membrane	3-phosphoinositide-dependent protein kinase activity|ATP binding			central_nervous_system(2)|ovary(1)	3		Ovarian(90;0.17)			Celecoxib(DB00482)	GGCGGAAACCCTTGGTAAGAA	0.488													4	117					0	0	3.59834e-05	0	0
SRRM2	23524	broad.mit.edu	37	16	2811824	2811824	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:2811824G>C	uc002crk.2	+	11	1844	c.1295G>C	c.(1294-1296)CGG>CCG	p.R432P	SRRM2_uc002crj.1_Missense_Mutation_p.R336P|SRRM2_uc002crl.1_Missense_Mutation_p.R432P|SRRM2_uc010bsu.1_Missense_Mutation_p.R336P	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	432	Pro-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						AAAGTTTCTCGGCATGCCAGC	0.547													5	223					0	0	0.000442599	0	0
CREBBP	1387	broad.mit.edu	37	16	3843402	3843402	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:3843402C>A	uc002cvv.2	-	4	1405	c.1201G>T	c.(1201-1203)GGG>TGG	p.G401W	CREBBP_uc002cvw.2_Missense_Mutation_p.G401W	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	401	TAZ-type 1.|Interaction with SRCAP.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		CAGGCTTTCCCAGCCTGACAA	0.483			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				8	157					3.86212e-05	0.000457303	0.000673444	1	0
PPL	5493	broad.mit.edu	37	16	4933624	4933624	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:4933624C>G	uc002cyd.1	-	22	5122	c.5032G>C	c.(5032-5034)GGG>CGG	p.G1678R		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	1678	Plectin 1.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						TCAATGAGCCCGGCACGGTGG	0.612													4	103					0	0	8.12818e-05	0	0
ABAT	18	broad.mit.edu	37	16	8862816	8862816	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:8862816C>G	uc002czc.3	+	11	968	c.802C>G	c.(802-804)CGC>GGC	p.R268G	ABAT_uc002czd.3_Missense_Mutation_p.R268G|ABAT_uc010buh.2_Missense_Mutation_p.R210G|ABAT_uc010bui.2_Missense_Mutation_p.R268G	NM_020686	NP_065737	P80404	GABT_HUMAN	4-aminobutyrate aminotransferase precursor	268				R -> G (in Ref. 1; AAA74449).	behavioral response to cocaine|gamma-aminobutyric acid catabolic process|neurotransmitter catabolic process|neurotransmitter secretion	4-aminobutyrate transaminase complex|mitochondrial matrix	(S)-3-amino-2-methylpropionate transaminase activity|4-aminobutyrate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|succinate-semialdehyde dehydrogenase binding			upper_aerodigestive_tract(1)	1					Divalproex sodium(DB00510)|Isoniazid(DB00951)|L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)|Tiagabine(DB00906)|Valproic Acid(DB00313)|Vigabatrin(DB01080)	GGAGGAGGCCCGCTGTCTGGA	0.552													4	153					0	0	3.59834e-05	0	0
GRIN2A	2903	broad.mit.edu	37	16	9916226	9916226	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:9916226C>T	uc002czo.3	-	10	2611	c.2063G>A	c.(2062-2064)GGA>GAA	p.G688E	GRIN2A_uc010uym.1_Missense_Mutation_p.G688E|GRIN2A_uc010uyn.1_Missense_Mutation_p.G531E|GRIN2A_uc002czr.3_Missense_Mutation_p.G688E	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	688	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTCCGTGCTTCCATTAGGCAC	0.353													6	68					0	0	3.59834e-05	0	0
ATF7IP2	80063	broad.mit.edu	37	16	10524874	10524874	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:10524874G>T	uc002czu.2	+	3	624	c.397G>T	c.(397-399)GAG>TAG	p.E133*	ATF7IP2_uc002czv.2_Nonsense_Mutation_p.E133*|ATF7IP2_uc010uyo.1_RNA|ATF7IP2_uc010uyp.1_Intron|ATF7IP2_uc002czw.2_Nonsense_Mutation_p.E133*|ATF7IP2_uc010uyq.1_RNA	NM_024997	NP_079273	Q5U623	MCAF2_HUMAN	activating transcription factor 7 interacting	133					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						CTTCACAGAAGAGGCAAAAGA	0.398													8	109					0.000274275	0.00290969	0.000274275	1	0
TXNDC11	51061	broad.mit.edu	37	16	11830038	11830038	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:11830038G>A	uc010buu.1	-	2	368	c.306C>T	c.(304-306)TCC>TCT	p.S102S	TXNDC11_uc002dbg.1_Silent_p.S102S	NM_015914	NP_056998	Q6PKC3	TXD11_HUMAN	thioredoxin domain containing 11	102	Thioredoxin 1.				cell redox homeostasis	endoplasmic reticulum membrane|integral to membrane					0						GAGACCTCAAGGAGAAAAAGC	0.448													6	45					0	0	3.59834e-05	0	0
ZC3H7A	29066	broad.mit.edu	37	16	11855303	11855303	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:11855303G>C	uc002dbk.2	-	18	2476	c.2278C>G	c.(2278-2280)CGT>GGT	p.R760G	ZC3H7A_uc002dbi.2_5'Flank|ZC3H7A_uc002dbj.2_Intron|ZC3H7A_uc002dbl.2_Missense_Mutation_p.R760G|ZC3H7A_uc002dbm.1_Missense_Mutation_p.R670G	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	760						nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						GGGAGAGGACGGATGTTCATC	0.368													5	326					0	0	8.12818e-05	0	0
ZC3H7A	29066	broad.mit.edu	37	16	11855314	11855314	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:11855314C>A	uc002dbk.2	-	18	2465	c.2267G>T	c.(2266-2268)TGG>TTG	p.W756L	ZC3H7A_uc002dbi.2_5'Flank|ZC3H7A_uc002dbj.2_Intron|ZC3H7A_uc002dbl.2_Missense_Mutation_p.W756L|ZC3H7A_uc002dbm.1_Missense_Mutation_p.W666L	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	756						nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						GATGTTCATCCACTTCTTACG	0.383													9	296					3.07112e-06	3.84493e-05	0.000978159	1	0
ZC3H7A	29066	broad.mit.edu	37	16	11858938	11858939	+	Missense_Mutation	DNP	CG	AC	AC			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:11858938_11858939CG>AC	uc002dbk.2	-	14	1988_1989	c.1790_1791CG>GT	c.(1789-1791)CCG>CGT	p.P597R	ZC3H7A_uc002dbj.2_RNA|ZC3H7A_uc002dbl.2_Missense_Mutation_p.P597R|ZC3H7A_uc002dbm.1_Missense_Mutation_p.P507R	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	597						nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						GCTTTGTAACCGGGTGAGAACA	0.282													6	195					0	0	6.4e-05	0	0
ZC3H7A	29066	broad.mit.edu	37	16	11873077	11873078	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:11873077_11873078GG>TT	uc002dbk.2	-	3	448_449	c.250_251CC>AA	c.(250-252)CCC>AAC	p.P84N	ZC3H7A_uc002dbl.2_Missense_Mutation_p.P84N|ZC3H7A_uc002dbm.1_Missense_Mutation_p.P84N	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	84						nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						TATTTCTTTGGGGATTAAAATT	0.307													9	292					0	0	6.4e-05	0	0
ZC3H7A	29066	broad.mit.edu	37	16	11873127	11873127	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:11873127C>G	uc002dbk.2	-	3	399	c.201G>C	c.(199-201)ACG>ACC	p.T67T	ZC3H7A_uc002dbl.2_Silent_p.T67T|ZC3H7A_uc002dbm.1_Silent_p.T67T	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	67	TPR 1.					nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						TCAAGGCTTCCGTGTACTGGC	0.328													5	318					0	0	8.12818e-05	0	0
RSL1D1	26156	broad.mit.edu	37	16	11931834	11931834	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:11931834G>T	uc002dbp.1	-	9	1356	c.1283C>A	c.(1282-1284)CCA>CAA	p.P428Q	RSL1D1_uc010buv.1_Missense_Mutation_p.P427Q|RSL1D1_uc010uyw.1_Missense_Mutation_p.P208Q	NM_015659	NP_056474	O76021	RL1D1_HUMAN	ribosomal L1 domain containing 1	428					regulation of protein localization|translation	large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome				0						cttcttctctgggcttttccc	0.104													11	299					0.000978159	0.00917326	0.000978159	1	0
MPV17L	255027	broad.mit.edu	37	16	15501864	15501864	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:15501864C>T	uc002ddn.2	+	4	630	c.486C>T	c.(484-486)ACC>ACT	p.T162T	MPV17L_uc002ddm.2_Missense_Mutation_p.L139F	NM_001128423	NP_001121895	Q2QL34	MP17L_HUMAN	MPV17 mitochondrial membrane protein-like	162	Helical; (Potential).					integral to membrane|peroxisomal membrane					0						TCTGGGCCACCTTCATCTGTT	0.498													9	72					0	0	0.000673444	0	0
KIAA0430	9665	broad.mit.edu	37	16	15702171	15702171	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:15702171G>T	uc002ddr.2	-	21	4352	c.4159C>A	c.(4159-4161)CAG>AAG	p.Q1387K	KIAA0430_uc002ddq.2_Missense_Mutation_p.Q1221K|KIAA0430_uc010uzv.1_Missense_Mutation_p.Q1383K|KIAA0430_uc010uzw.1_Missense_Mutation_p.Q1386K	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	1386						peroxisome	nucleotide binding|RNA binding				0						CAGAGTTTCTGAGTTAAAGCC	0.353													8	131					3.09899e-07	4.00456e-06	0.000274275	1	0
KIAA0430	9665	broad.mit.edu	37	16	15716963	15716963	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:15716963A>G	uc002ddr.2	-	11	2481	c.2288T>C	c.(2287-2289)CTT>CCT	p.L763P	KIAA0430_uc002ddq.2_Intron|KIAA0430_uc010uzv.1_Missense_Mutation_p.L759P|KIAA0430_uc010uzw.1_Missense_Mutation_p.L762P	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	762						peroxisome	nucleotide binding|RNA binding				0						TCTGTTTAAAAGGTTTGGAGA	0.388													4	114					0	0	0.00024832	0	0
XYLT1	64131	broad.mit.edu	37	16	17211812	17211812	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:17211812C>T	uc002dfa.2	-	11	2333	c.2248G>A	c.(2248-2250)GAG>AAG	p.E750K		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	750	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						AATAGCCTCTCCTTGGCATCC	0.572													7	50					0	0	0.000274275	0	0
ARL6IP1	23204	broad.mit.edu	37	16	18810081	18810081	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:18810081G>T	uc002dfl.1	-	2	181	c.112C>A	c.(112-114)CGA>AGA	p.R38R	ARL6IP1_uc010van.1_Silent_p.R9R|ARL6IP1_uc010bvz.1_RNA	NM_015161	NP_055976	Q15041	AR6P1_HUMAN	ADP-ribosylation factor-like 6 interacting	38						integral to membrane	protein binding				0						CTTTCCCATCGGAGGACTTTA	0.458													6	144					0.000274275	0.00290969	0.000274275	1	0
SMG1	23049	broad.mit.edu	37	16	18823170	18823171	+	Nonsense_Mutation	DNP	GG	TC	TC			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:18823170_18823171GG>TC	uc002dfm.2	-	62	11183_11184	c.10820_10821CC>GA	c.(10819-10821)TCC>TGA	p.S3607*	SMG1_uc010bwb.2_Nonsense_Mutation_p.S3467*|SMG1_uc010bwa.2_Nonsense_Mutation_p.S2338*	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	3607					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						TCACTGCATAGGAGTTTCTCTC	0.401													10	301					0	0	6.4e-05	0	0
TMC5	79838	broad.mit.edu	37	16	19460949	19460949	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:19460949C>A	uc002dgc.3	+	5	1793	c.1044C>A	c.(1042-1044)CCC>CCA	p.P348P	TMC5_uc010vaq.1_Silent_p.P348P|TMC5_uc002dgb.3_Silent_p.P348P|TMC5_uc010var.1_Silent_p.P348P	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	348	Extracellular (Potential).					integral to membrane				skin(1)	1						ACAAGTCACCCCAAGGTAAGt	0.269													7	113					2.0095e-06	2.53297e-05	8.12818e-05	1	0
GP2	2813	broad.mit.edu	37	16	20330986	20330986	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:20330986C>G	uc002dgv.2	-	7	1055	c.972G>C	c.(970-972)CTG>CTC	p.L324L	GP2_uc002dgw.2_Silent_p.L321L|GP2_uc002dgx.2_Silent_p.L177L|GP2_uc002dgy.2_Silent_p.L174L	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	324	ZP.					anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						CTTTCATGTCCAGTGGGTAGG	0.478													5	143					0	0	0.000602214	0	0
UMOD	7369	broad.mit.edu	37	16	20359606	20359606	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:20359606C>A	uc002dgz.2	-	4	1041	c.912G>T	c.(910-912)GAG>GAT	p.E304D	UMOD_uc002dha.2_Missense_Mutation_p.E304D|UMOD_uc002dhb.2_Missense_Mutation_p.E337D	NM_003361	NP_003352	P07911	UROM_HUMAN	uromodulin precursor	304					cellular defense response|negative regulation of cell proliferation	anchored to membrane|apical plasma membrane|basolateral plasma membrane|cilium membrane|extrinsic to membrane|primary cilium|spindle pole	calcium ion binding			ovary(1)|skin(1)	2						ATTTGCAGTCCTCGTCTATAC	0.557													9	189					9.31168e-06	0.000114714	0.000151284	1	0
ACSM2B	348158	broad.mit.edu	37	16	20563466	20563466	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:20563466C>T	uc002dhj.3	-	7	1104	c.894G>A	c.(892-894)AAG>AAA	p.K298K	ACSM2B_uc002dhk.3_Silent_p.K298K|ACSM2B_uc010bwf.1_Silent_p.K298K	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	298					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						CCTCTCTTACCTTTAGAATAA	0.373													13	76					0	0	0.000308642	0	0
ACSM2B	348158	broad.mit.edu	37	16	20570715	20570715	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:20570715C>T	uc002dhj.3	-	4	442	c.232G>A	c.(232-234)GAA>AAA	p.E78K	ACSM2B_uc002dhk.3_Missense_Mutation_p.E78K|ACSM2B_uc010bwf.1_Missense_Mutation_p.E78K	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	78					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						CACATTAATTCCTTCCCCTTC	0.557													4	17					0	0	0.000602214	0	0
THUMPD1	55623	broad.mit.edu	37	16	20748283	20748283	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:20748283C>G	uc002dho.2	-	4	1119	c.981G>C	c.(979-981)GTG>GTC	p.V327V	THUMPD1_uc010vaz.1_Silent_p.V180V|THUMPD1_uc002dhp.2_Silent_p.V327V	NM_017736	NP_060206	Q9NXG2	THUM1_HUMAN	THUMP domain containing 1	327											0						CCTCATTTACCACCTGTGGAT	0.443													4	122					0	0	0.00024832	0	0
DNAH3	55567	broad.mit.edu	37	16	20986566	20986566	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:20986566G>T	uc010vbe.1	-	51	8248	c.8248C>A	c.(8248-8250)CAA>AAA	p.Q2750K	DNAH3_uc010vbd.1_Missense_Mutation_p.Q185K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2750	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TTGATTCCTTGGGCAATGGCA	0.343													8	241					0.000978159	0.00917326	0.000978159	1	0
Unknown	0	broad.mit.edu	37	16	21854839	21854839	+	Missense_Mutation	SNP	A	C	C	rs150414472	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:21854839A>C	uc002djr.3	-	6	595	c.413T>G	c.(412-414)GTC>GGC	p.V138G	uc002djs.3_RNA|uc002djq.3_Missense_Mutation_p.V119G|uc010vbn.1_Missense_Mutation_p.V138G	NM_130464	NP_569731			nuclear pore complex interacting protein-like 3																		GTCTTTCAGGACAATTTTATT	0.408													5	652					0	0	0.000602214	0	0
POLR3E	55718	broad.mit.edu	37	16	22343420	22343420	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:22343420C>G	uc002dkk.2	+	20	2140	c.1984C>G	c.(1984-1986)CGG>GGG	p.R662G	POLR3E_uc002dkm.2_Missense_Mutation_p.R626G|POLR3E_uc010vbr.1_Intron|POLR3E_uc002dkl.2_Intron|POLR3E_uc010vbs.1_Missense_Mutation_p.R626G|POLR3E_uc010vbt.1_Missense_Mutation_p.R606G	NM_018119	NP_060589	Q9NVU0	RPC5_HUMAN	RNA polymerase III polypeptide E	662					innate immune response|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA-directed RNA polymerase activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(48;0.012)		CAAAAATTACCGGGTACGCCG	0.398													4	126					0	0	0.00024832	0	0
COG7	91949	broad.mit.edu	37	16	23445990	23445990	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:23445990G>C	uc002dlo.2	-	5	842	c.654C>G	c.(652-654)CCC>CCG	p.P218P		NM_153603	NP_705831	P83436	COG7_HUMAN	component of oligomeric golgi complex 7	218					intracellular protein transport|protein glycosylation|protein localization in Golgi apparatus|protein stabilization|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0				GBM - Glioblastoma multiforme(48;0.0401)		CCAGGAGCTGGGGCATCCGGT	0.448											OREG0023684	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	71					0	0	0.000157383	0	0
PRKCB	5579	broad.mit.edu	37	16	24192138	24192138	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:24192138C>T	uc002dmd.2	+	13	1619	c.1422C>T	c.(1420-1422)CTC>CTT	p.L474L	PRKCB_uc002dme.2_Silent_p.L474L	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	474	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	ACGTGATGCTCGATTCTGAGG	0.413													17	143					0	0	0.00047179	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25266607	25266607	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:25266607C>G	uc002dod.3	-	2	913	c.506G>C	c.(505-507)CGG>CCG	p.R169P	ZKSCAN2_uc010vcl.1_5'UTR|ZKSCAN2_uc002doe.2_Missense_Mutation_p.R169P	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	169					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		AGGTTCCTCCCGAGACACCGC	0.617													3	37					0	0	6.4e-05	0	0
IL4R	3566	broad.mit.edu	37	16	27373701	27373701	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:27373701C>G	uc002don.2	+	11	1270	c.1028C>G	c.(1027-1029)CCA>CGA	p.P343R	IL4R_uc002dop.3_Missense_Mutation_p.P328R|IL4R_uc010bxy.2_Missense_Mutation_p.P343R|IL4R_uc002doo.2_Missense_Mutation_p.P183R	NM_000418	NP_000409	P24394	IL4RA_HUMAN	interleukin 4 receptor alpha chain isoform a	343	Cytoplasmic (Potential).				immune response|production of molecular mediator involved in inflammatory response	integral to plasma membrane	identical protein binding|interleukin-4 receptor activity|receptor signaling protein activity			ovary(1)|skin(1)	2						GCATGGTGCCCAGTGGAGATC	0.547													5	117					0	0	8.12818e-05	0	0
SBK1	388228	broad.mit.edu	37	16	28330377	28330377	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:28330377G>A	uc002dpd.2	+	3	1077	c.288G>A	c.(286-288)CGG>CGA	p.R96R		NM_001024401	NP_001019572	Q52WX2	SBK1_HUMAN	SH3-binding kinase 1	96	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|kidney(1)	2						ACTTCCTACGGGAGGTGAGCA	0.517													29	143					0	0	0.00058488	0	0
SULT1A1	6817	broad.mit.edu	37	16	28620093	28620093	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:28620093C>G	uc002dqi.2	-	1	557	c.84G>C	c.(82-84)CTG>CTC	p.L28L	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Silent_p.L28L|SULT1A1_uc002dqk.2_Silent_p.L28L|SULT1A1_uc002dql.2_Silent_p.L28L|SULT1A1_uc002dqm.2_Intron|SULT1A1_uc002dqn.2_Silent_p.L119L|SULT1A1_uc002dqo.2_Silent_p.L28L|SULT1A1_uc002dqp.2_Silent_p.L28L	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	28					3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						GCAGGGGCCCCAGTGCCTCTG	0.647													4	42					0	0	0.00024832	0	0
PPP4C	5531	broad.mit.edu	37	16	30095042	30095042	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:30095042C>A	uc002dwe.2	+	7	688	c.544C>A	c.(544-546)CGA>AGA	p.R182R	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|PPP4C_uc002dwf.2_Silent_p.R182R|PPP4C_uc002dwg.2_RNA|PPP4C_uc002dwh.2_Silent_p.R103R	NM_002720	NP_002711	P60510	PP4C_HUMAN	protein phosphatase 4, catalytic subunit	182					microtubule cytoskeleton organization|regulation of double-strand break repair via homologous recombination	centrosome|nucleus	metal ion binding|NF-kappaB-inducing kinase activity|protein binding|protein serine/threonine phosphatase activity			skin(1)	1						GACAATCGACCGAAAGCAAGA	0.622													6	102					1.06961e-07	1.39386e-06	0.000157383	1	0
CD2BP2	10421	broad.mit.edu	37	16	30364596	30364596	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:30364596C>G	uc002dxr.2	-	5	1074	c.821G>C	c.(820-822)CGG>CCG	p.R274P	CD2BP2_uc002dxs.2_Missense_Mutation_p.R274P	NM_006110	NP_006101	O95400	CD2B2_HUMAN	CD2 antigen (cytoplasmic tail) binding protein	274					assembly of spliceosomal tri-snRNP	cytoplasm|nucleoplasm|U5 snRNP	protein binding|ribonucleoprotein binding			ovary(1)	1						ACCATCTCCCCGCGACTCTGC	0.572													5	147					0	0	0.000442599	0	0
ZNF48	197407	broad.mit.edu	37	16	30409776	30409776	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:30409776C>T	uc002dya.1	+	2	1264	c.1205C>T	c.(1204-1206)CCC>CTC	p.P402L	ZNF48_uc002dxz.1_Missense_Mutation_p.P279L	NM_152652	NP_689865	Q96MX3	ZNF48_HUMAN	zinc finger protein 48	402	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCCAGCCCACCCCCACCTCCT	0.667													4	60					0	0	0.00024832	0	0
SETD1A	9739	broad.mit.edu	37	16	30977287	30977287	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:30977287G>C	uc002ead.1	+	8	2771	c.2085G>C	c.(2083-2085)CAG>CAC	p.Q695H		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	695					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						AGCTGCGGCAGGGCAAGGGAT	0.652													5	80					0	0	8.12818e-05	0	0
MYST1	84148	broad.mit.edu	37	16	31138568	31138568	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:31138568G>C	uc002eay.2	+	5	593	c.575G>C	c.(574-576)TGG>TCG	p.W192S	MYST1_uc002eax.2_Missense_Mutation_p.W192S|MYST1_uc002eaz.2_Missense_Mutation_p.W34S|MYST1_uc002eba.2_5'UTR|MYST1_uc002ebb.2_5'Flank	NM_032188	NP_115564	Q9H7Z6	MYST1_HUMAN	MYST histone acetyltransferase 1 isoform 1	192					histone H4-K16 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex|MSL complex	histone acetyltransferase activity|metal ion binding|methylated histone residue binding|transcription factor binding			ovary(1)	1						ATTGATGCCTGGTATTTCTCA	0.517													4	103					0	0	0.00024832	0	0
PRSS36	146547	broad.mit.edu	37	16	31154714	31154714	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:31154714C>G	uc002ebd.2	-	8	1108	c.1049G>C	c.(1048-1050)GGG>GCG	p.G350A	PRSS36_uc010vff.1_Missense_Mutation_p.G125A|PRSS36_uc010vfg.1_Missense_Mutation_p.G350A|PRSS36_uc010vfh.1_Missense_Mutation_p.G350A	NM_173502	NP_775773	Q5K4E3	POLS2_HUMAN	protease, serine, 36 precursor	350	Peptidase S1 2.				proteolysis	cytoplasm|proteinaceous extracellular matrix	serine-type endopeptidase activity			ovary(1)	1						CACCAGCGCCCCATGGCAGGG	0.647													4	82					0	0	0.00024832	0	0
ITGAX	3687	broad.mit.edu	37	16	31374667	31374667	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:31374667G>A	uc002ebu.1	+	14	1749	c.1682G>A	c.(1681-1683)GGA>GAA	p.G561E	ITGAX_uc002ebt.2_Missense_Mutation_p.G561E|ITGAX_uc010vfk.1_Missense_Mutation_p.G211E	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	561	Extracellular (Potential).|FG-GAP 6.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GGAGTCTTGGGACCCAGCATC	0.592													8	77					0	0	0.000274275	0	0
SLC5A2	6524	broad.mit.edu	37	16	31500246	31500246	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:31500246C>G	uc002ecf.3	+	11	1345	c.1326C>G	c.(1324-1326)CCC>CCG	p.P442P	SLC5A2_uc010car.2_Intron|C16orf58_uc002ecg.2_RNA	NM_003041	NP_003032	P31639	SC5A2_HUMAN	solute carrier family 5 (sodium/glucose	442	Helical; (Potential).				carbohydrate metabolic process	integral to membrane	low-affinity glucose:sodium symporter activity			ovary(1)	1						CCTGGCTTCCCGTGGTGCAGG	0.682													3	51					0	0	3.59834e-05	0	0
VPS35	55737	broad.mit.edu	37	16	46710538	46710538	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:46710538G>C	uc002eef.3	-	8	970	c.871C>G	c.(871-873)CAG>GAG	p.Q291E	VPS35_uc002eed.2_Missense_Mutation_p.Q112E|VPS35_uc002eee.2_Missense_Mutation_p.Q252E	NM_018206	NP_060676	Q96QK1	VPS35_HUMAN	vacuolar protein sorting 35	291					protein transport|retrograde transport, endosome to Golgi	cytosol|endosome|membrane	protein binding				0		all_cancers(37;7.65e-05)|all_epithelial(9;0.000154)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				TTTACATTCTGGTGTAACTCA	0.353													6	68					0	0	8.12818e-05	0	0
LONP2	83752	broad.mit.edu	37	16	48330035	48330035	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:48330035C>A	uc002efi.1	+	9	1582	c.1493C>A	c.(1492-1494)CCA>CAA	p.P498Q	LONP2_uc010vgm.1_RNA|LONP2_uc002efj.1_Missense_Mutation_p.P454Q	NM_031490	NP_113678	Q86WA8	LONP2_HUMAN	peroxisomal LON protease-like	498					misfolded or incompletely synthesized protein catabolic process|protein targeting to peroxisome|signal peptide processing	nucleoid|peroxisomal matrix	ATP binding|ATP-dependent peptidase activity|enzyme binding|sequence-specific DNA binding|serine-type endopeptidase activity				0						GCTACCATTCCAGCTGCCTTG	0.388													8	164					0.000442599	0.00445669	0.000442599	1	0
N4BP1	9683	broad.mit.edu	37	16	48582007	48582007	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:48582007C>A	uc002efp.2	-	5	2373	c.2136G>T	c.(2134-2136)GCG>GCT	p.A712A		NM_153029	NP_694574	O75113	N4BP1_HUMAN	Nedd4 binding protein 1	712					negative regulation of proteasomal ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination	nucleolus|PML body					0		all_cancers(37;0.179)|all_lung(18;0.11)				CAGTTTTGTCCGCTAAGTGTA	0.343													11	312					0.000978159	0.00917326	0.000978159	1	0
CBLN1	869	broad.mit.edu	37	16	49314898	49314898	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:49314898G>C	uc002efq.2	-	2	659	c.320C>G	c.(319-321)CCG>CGG	p.P107R		NM_004352	NP_004343	P23435	CBLN1_HUMAN	cerebellin 1 precursor	107	C1q.|Necessary for interaction with CBLN3, and homotrimerization (By similarity).				nervous system development|synaptic transmission	cell junction|extracellular region|synapse					0		all_cancers(37;0.0766)|all_lung(18;0.24)				CCCTTTGCGCGGGGCGATGAA	0.537													4	102					0	0	3.59834e-05	0	0
HEATR3	55027	broad.mit.edu	37	16	50136244	50136244	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:50136244C>A	uc002efw.2	+	14	1980	c.1818C>A	c.(1816-1818)GCC>GCA	p.A606A	HEATR3_uc002efx.2_Silent_p.A520A	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	606							binding			ovary(1)|skin(1)	2						CTTTGGATGCCCTCTTTGATG	0.398													8	168					0.000442599	0.00445669	0.000442599	1	0
HEATR3	55027	broad.mit.edu	37	16	50136331	50136331	+	Silent	SNP	G	C	C	rs150830240	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:50136331G>C	uc002efw.2	+	14	2067	c.1905G>C	c.(1903-1905)CCG>CCC	p.P635P	HEATR3_uc002efx.2_Silent_p.P549P	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	635							binding			ovary(1)|skin(1)	2						AATTCCAGCCGGTCTTTAAAA	0.393													4	165					0	0	0.000157383	0	0
PAPD5	64282	broad.mit.edu	37	16	50258694	50258694	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:50258694G>T	uc010vgo.1	+	9	1498	c.1463G>T	c.(1462-1464)AGC>ATC	p.S488I	PAPD5_uc010cbi.2_RNA|PAPD5_uc002efz.2_Missense_Mutation_p.S279I|PAPD5_uc002ega.2_Missense_Mutation_p.S279I	NM_001040284	NP_001035374	Q8NDF8	PAPD5_HUMAN	PAP associated domain containing 5 isoform a	409					cell division|DNA replication|histone mRNA catabolic process|mitosis	cytoplasm|nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding				0		all_cancers(37;0.0452)		BRCA - Breast invasive adenocarcinoma(181;0.0843)|GBM - Glioblastoma multiforme(240;0.231)		GAAACAGAAAGGTAAAAGTTC	0.388													8	200					0.000673444	0.00655963	0.000673444	1	0
CHD9	80205	broad.mit.edu	37	16	53243605	53243605	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:53243605C>A	uc002ehb.2	+	2	1828	c.1664C>A	c.(1663-1665)CCT>CAT	p.P555H	CHD9_uc002egy.2_Missense_Mutation_p.P555H|CHD9_uc002egz.1_Missense_Mutation_p.P555H|CHD9_uc002eha.1_Missense_Mutation_p.P555H|CHD9_uc002ehc.2_Missense_Mutation_p.P555H|CHD9_uc002ehd.2_Missense_Mutation_p.P81H	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	555					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				GAAAACTTTCCTACTGCTTCA	0.393													8	87					0.000157383	0.00173811	0.000157383	1	0
CHD9	80205	broad.mit.edu	37	16	53337938	53337938	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:53337938C>A	uc002ehb.2	+	30	6184	c.6020C>A	c.(6019-6021)GCT>GAT	p.A2007D	CHD9_uc002egy.2_Missense_Mutation_p.A2007D|CHD9_uc002ehc.2_Missense_Mutation_p.A2007D|CHD9_uc002ehf.2_Missense_Mutation_p.A1121D|CHD9_uc010cbw.2_Intron|CHD9_uc002ehg.1_Missense_Mutation_p.A13D	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	2007					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				AGTAAGATGGCTCATTCAAGG	0.458													7	133					0.000274275	0.00290969	0.000274275	1	0
AKTIP	64400	broad.mit.edu	37	16	53526643	53526643	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:53526643C>A	uc002ehk.2	-	9	944	c.733G>T	c.(733-735)GTA>TTA	p.V245L	AKTIP_uc002ehl.2_Missense_Mutation_p.V245L|AKTIP_uc002ehm.2_Missense_Mutation_p.V245L	NM_001012398	NP_001012398	Q9H8T0	AKTIP_HUMAN	AKT interacting protein	245					apoptosis|early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|positive regulation of protein binding|positive regulation of protein phosphorylation|protein transport	FHF complex|plasma membrane	acid-amino acid ligase activity|protein binding				0		all_cancers(37;0.14)				TCATCATGTACAGAAGGATTC	0.318													15	514					7.07596e-05	0.000828646	0.00074312	1	0
RPGRIP1L	23322	broad.mit.edu	37	16	53652993	53652993	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:53652993G>C	uc002ehp.2	-	24	3624	c.3560C>G	c.(3559-3561)CCC>CGC	p.P1187R	RPGRIP1L_uc002eho.3_Missense_Mutation_p.P1107R|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.P1141R|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.P1153R|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.P1141R	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	1187					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				AAGTGACACGGGTGTCTCTTC	0.398													4	267					0	0	3.59834e-05	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53672265	53672265	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:53672265G>T	uc002ehp.2	-	20	3081	c.3017C>A	c.(3016-3018)CCA>CAA	p.P1006Q	RPGRIP1L_uc002eho.3_Intron|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.P1006Q|RPGRIP1L_uc010cbx.2_Intron|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.P1006Q	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	1006					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				TTCTATTTCTGGTATATGCTC	0.328													14	311					0.000175454	0.00193691	0.000175454	1	0
RPGRIP1L	23322	broad.mit.edu	37	16	53672324	53672324	+	Splice_Site	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:53672324C>A	uc002ehp.2	-	20	3023	c.2959_splice	c.e20-1	p.E987_splice	RPGRIP1L_uc002eho.3_Intron|RPGRIP1L_uc010vgy.1_Splice_Site_p.E987_splice|RPGRIP1L_uc010cbx.2_Intron|RPGRIP1L_uc010vgz.1_Splice_Site_p.E987_splice	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a						negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				GAGAAGTCTCCTTATATTAAT	0.333													11	273					0.000219431	0.00241088	0.000219431	1	0
RPGRIP1L	23322	broad.mit.edu	37	16	53674958	53674958	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:53674958G>C	uc002ehp.2	-	19	3009	c.2945C>G	c.(2944-2946)CCA>CGA	p.P982R	RPGRIP1L_uc002eho.3_Missense_Mutation_p.P982R|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.P982R|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.P982R|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.P982R	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	982					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				ACTCTGATGTGGCATGATATC	0.343													5	400					0	0	0.000274275	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53683028	53683028	+	Splice_Site	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:53683028C>A	uc002ehp.2	-	16	2217	c.2153_splice	c.e16-1	p.G718_splice	RPGRIP1L_uc002eho.3_Splice_Site_p.G718_splice|RPGRIP1L_uc010vgy.1_Splice_Site_p.G718_splice|RPGRIP1L_uc010cbx.2_Splice_Site_p.G718_splice|RPGRIP1L_uc010vgz.1_Splice_Site_p.G718_splice	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a						negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				CCTTTTGTTCCTACAAATCAG	0.338													13	342					9.31168e-06	0.000114714	0.000151284	1	0
RPGRIP1L	23322	broad.mit.edu	37	16	53706813	53706813	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:53706813G>T	uc002ehp.2	-	8	1062	c.998C>A	c.(997-999)TCT>TAT	p.S333Y	RPGRIP1L_uc002eho.3_Missense_Mutation_p.S333Y|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.S333Y|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.S333Y|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.S333Y|RPGRIP1L_uc002ehq.1_Missense_Mutation_p.S333Y	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	333	Potential.				negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				AAACTTCATAGAATGTAATTG	0.358													11	308					0.000673444	0.00655963	0.000673444	1	0
RPGRIP1L	23322	broad.mit.edu	37	16	53725985	53725986	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:53725985_53725986GG>TT	uc002ehp.2	-	4	585_586	c.521_522CC>AA	c.(520-522)CCC>CAA	p.P174Q	RPGRIP1L_uc002eho.3_Missense_Mutation_p.P174Q|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.P174Q|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.P174Q|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.P174Q|RPGRIP1L_uc002ehq.1_Missense_Mutation_p.P174Q	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	174					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				TACCTTTCCTGGGGCATTCCTG	0.356													12	344					0	0	6.4e-05	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53730178	53730178	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:53730178G>C	uc002ehp.2	-	3	179	c.115C>G	c.(115-117)CGC>GGC	p.R39G	RPGRIP1L_uc002eho.3_Missense_Mutation_p.R39G|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.R39G|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.R39G|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.R39G|RPGRIP1L_uc002ehq.1_Missense_Mutation_p.R39G|RPGRIP1L_uc010cby.1_Missense_Mutation_p.R39G	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	39					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				ACTGCCTGGCGAGACTTCATT	0.393													8	568					0	0	0.000442599	0	0
FTO	79068	broad.mit.edu	37	16	53860322	53860322	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:53860322G>A	uc002ehr.2	+	3	892	c.670G>A	c.(670-672)GGG>AGG	p.G224R	FTO_uc010vha.1_Intron	NM_001080432	NP_001073901	Q9C0B1	FTO_HUMAN	fat mass and obesity associated	224	Loop L1; predicted to block binding of double-stranded DNA or RNA.|Fe2OG dioxygenase domain.				DNA dealkylation involved in DNA repair|oxidative single-stranded DNA demethylation|oxidative single-stranded RNA demethylation|RNA repair	nucleus	DNA-N1-methyladenine dioxygenase activity|ferrous iron binding|oxidative DNA demethylase activity|oxidative RNA demethylase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						TTTTGGCATGGGGAAAATGGC	0.453													5	104					0	0	8.12818e-05	0	0
BBS2	583	broad.mit.edu	37	16	56535265	56535265	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:56535265C>G	uc002ejd.2	-	10	1459	c.1225G>C	c.(1225-1227)GAC>CAC	p.D409H	BBS2_uc010ccg.2_3'UTR	NM_031885	NP_114091	Q9BXC9	BBS2_HUMAN	Bardet-Biedl syndrome 2 protein	409					adult behavior|brain morphogenesis|cerebral cortex development|cilium morphogenesis|fat cell differentiation|hippocampus development|melanosome transport|negative regulation of multicellular organism growth|photoreceptor cell maintenance|protein localization to organelle|regulation of cilium beat frequency involved in ciliary motility|sperm axoneme assembly|striatum development	BBSome|cilium membrane|microtubule basal body|motile cilium	protein binding			ovary(1)	1						ACTGTCTTACCATTAGAAGTG	0.378									Bardet-Biedl_syndrome				6	259					0	0	3.59834e-05	0	0
SLC12A3	6559	broad.mit.edu	37	16	56921879	56921879	+	Missense_Mutation	SNP	G	C	C	rs138977195	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:56921879G>C	uc010ccm.2	+	18	2250	c.2221G>C	c.(2221-2223)GGG>CGG	p.G741R	SLC12A3_uc002ekd.3_Missense_Mutation_p.G741R|SLC12A3_uc010ccn.2_Missense_Mutation_p.G740R	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	741	Cytoplasmic (Potential).		G -> R (in GS).		sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	TCTGGTGGTTGGGTTCAAGAA	0.592													4	73					0	0	3.59834e-05	0	0
NLRC5	84166	broad.mit.edu	37	16	57088731	57088731	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:57088731G>T	uc002ekk.1	+	25	3800	c.3575G>T	c.(3574-3576)CGG>CTG	p.R1192L	NLRC5_uc002ekn.2_Missense_Mutation_p.R911L|NLRC5_uc002ekl.2_Missense_Mutation_p.R997L|NLRC5_uc002ekm.2_Missense_Mutation_p.R967L|NLRC5_uc010ccr.1_RNA|NLRC5_uc010ccs.1_RNA|NLRC5_uc002eko.1_RNA|NLRC5_uc002ekp.1_Missense_Mutation_p.R108L|NLRC5_uc002ekq.1_5'UTR|NLRC5_uc002ekr.1_Missense_Mutation_p.R108L	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	1192					defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				CTGTGTCCACGGGTTAAAAAG	0.582													11	146					0.000978159	0.00917326	0.000978159	1	0
CPNE2	221184	broad.mit.edu	37	16	57181538	57181538	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:57181538A>G	uc002eks.1	+	16	1844	c.1615A>G	c.(1615-1617)AAC>GAC	p.N539D	CPNE2_uc010cct.1_Missense_Mutation_p.N565D|CPNE2_uc010ccu.1_Missense_Mutation_p.N539D|CPNE2_uc002ekt.1_3'UTR	NM_152727	NP_689940	Q96FN4	CPNE2_HUMAN	copine II	539										central_nervous_system(1)|skin(1)	2		all_neural(199;0.224)				CAAGCATAAAAACCTGCCCCC	0.612													6	59					0	0	8.12818e-05	0	0
CNGB1	1258	broad.mit.edu	37	16	57921871	57921871	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:57921871C>T	uc002emt.2	-	32	3415	c.3350G>A	c.(3349-3351)GGA>GAA	p.G1117E	CNGB1_uc010cdh.2_Missense_Mutation_p.G1111E	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	1117	Cytoplasmic (Potential).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						ACCCATCTTTCCTGTCATAGC	0.612													20	126					0	0	0.000229342	0	0
CNOT1	23019	broad.mit.edu	37	16	58573856	58573856	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:58573856C>G	uc002env.2	-	35	5101	c.4808G>C	c.(4807-4809)TGG>TCG	p.W1603S	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.W1598S|CNOT1_uc010vik.1_Missense_Mutation_p.W560S	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	1603					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		ATCTGTTGCCCAAGCTTGCTG	0.383													4	70					0	0	3.59834e-05	0	0
DYNC1LI2	1783	broad.mit.edu	37	16	66783166	66783166	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:66783166C>A	uc002eqb.1	-	3	263	c.232G>T	c.(232-234)GAG>TAG	p.E78*	DYNC1LI2_uc010vis.1_Nonsense_Mutation_p.E78*|DYNC1LI2_uc010vit.1_Nonsense_Mutation_p.E78*|DYNC1LI2_uc010viu.1_Intron	NM_006141	NP_006132	O43237	DC1L2_HUMAN	dynein, cytoplasmic, light intermediate	78					transport	centrosome|cytoplasmic dynein complex|microtubule	ATP binding|motor activity			central_nervous_system(3)|skin(1)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0907)|Epithelial(162;0.212)		TTGCCATGCTCAGCTCCTTGT	0.468													7	109					0.000673444	0.00655963	0.000673444	1	0
NAE1	8883	broad.mit.edu	37	16	66858781	66858781	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:66858781G>C	uc002eqf.2	-	4	303	c.226C>G	c.(226-228)CTT>GTT	p.L76V	NAE1_uc002eqe.2_Missense_Mutation_p.L70V|NAE1_uc002eqg.2_5'UTR|NAE1_uc010cdv.2_Missense_Mutation_p.L79V|NAE1_uc010cdw.1_5'UTR	NM_003905	NP_003896	Q13564	ULA1_HUMAN	NEDD8 activating enzyme E1 subunit 1 isoform a	76					apoptosis|cell cycle|DNA replication|mitotic cell cycle DNA replication checkpoint|protein neddylation|signal transduction	cytoplasm|insoluble fraction|plasma membrane	catalytic activity|protein heterodimerization activity			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0914)|Epithelial(162;0.214)	Adenosine triphosphate(DB00171)	CTTCTTTGAAGGAAGAAACTA	0.333													4	123					0	0	0.000602214	0	0
CBFB	865	broad.mit.edu	37	16	67116242	67116242	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:67116242G>T	uc002era.2	+	5	787	c.526G>T	c.(526-528)GGC>TGC	p.G176C	CBFB_uc002erb.2_Intron|CBFB_uc010vja.1_Intron	NM_001755	NP_001746	Q13951	PEBB_HUMAN	core-binding factor, beta subunit isoform 2	176					transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			breast(2)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00189)|Epithelial(162;0.00755)|all cancers(182;0.066)		GGCAGTAACTGGTTAGTACTT	0.408			T	MYH11	AML								8	194					0.000978159	0.00917326	0.000978159	1	0
C16orf70	80262	broad.mit.edu	37	16	67154077	67154077	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:67154077C>G	uc002erc.2	+	3	211	c.127C>G	c.(127-129)CAG>GAG	p.Q43E	C16orf70_uc002erd.2_Missense_Mutation_p.Q43E|C16orf70_uc002ere.1_Missense_Mutation_p.Q21E	NM_025187	NP_079463	Q9BSU1	CP070_HUMAN	lin-10	43										ovary(2)	2		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0017)|Epithelial(162;0.00655)|all cancers(182;0.0579)		CAAAAACGTCCAGGTTCTCTA	0.463													4	142					0	0	0.000602214	0	0
C16orf70	80262	broad.mit.edu	37	16	67180230	67180230	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:67180230G>T	uc002erc.2	+	16	1243	c.1159G>T	c.(1159-1161)GGT>TGT	p.G387C	C16orf70_uc002erd.2_Missense_Mutation_p.G387C|uc002erg.1_5'Flank	NM_025187	NP_079463	Q9BSU1	CP070_HUMAN	lin-10	387										ovary(2)	2		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0017)|Epithelial(162;0.00655)|all cancers(182;0.0579)		ATTCTGCTTTGGTCTTCAGCG	0.512													10	311					0.00010058	0.00115734	0.00010058	1	0
KCTD19	146212	broad.mit.edu	37	16	67354729	67354729	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:67354729G>T	uc002esu.2	-	2	114	c.63C>A	c.(61-63)GGC>GGA	p.G21G	KCTD19_uc002est.2_Translation_Start_Site|KCTD19_uc010vjj.1_Translation_Start_Site	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	21	BTB 1.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		AGAAATGCCAGCCCCCTACGT	0.453													7	119					0.000442599	0.00445669	0.000442599	1	0
GFOD2	81577	broad.mit.edu	37	16	67709429	67709429	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:67709429G>C	uc002eub.2	-	3	1082	c.787C>G	c.(787-789)CGG>GGG	p.R263G	GFOD2_uc002eua.1_RNA|GFOD2_uc002euc.2_Missense_Mutation_p.R158G	NM_030819	NP_110446	Q3B7J2	GFOD2_HUMAN	glucose-fructose oxidoreductase domain	263						proteinaceous extracellular matrix	binding|oxidoreductase activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0151)|Epithelial(162;0.0505)|all cancers(182;0.242)		TCGGCTCCCCGGGCGACGAGG	0.627													5	60					0	0	0.000602214	0	0
EDC4	23644	broad.mit.edu	37	16	67911274	67911274	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:67911274C>G	uc002eur.2	+	5	772	c.606C>G	c.(604-606)TTC>TTG	p.F202L	EDC4_uc010cer.2_5'UTR|EDC4_uc010vkg.1_Missense_Mutation_p.F134L|EDC4_uc010ces.1_Missense_Mutation_p.F45L|EDC4_uc002eus.2_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	202	WD 1.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		GCAACCTGTTCGTGTGGCGCT	0.587													3	73					0	0	0.000602214	0	0
ESRP2	80004	broad.mit.edu	37	16	68264150	68264150	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:68264150G>C	uc010cfa.1	-	15	2351	c.2163C>G	c.(2161-2163)CCC>CCG	p.P721P	ESRP2_uc002evp.1_RNA|ESRP2_uc002evq.1_Silent_p.P711P	NM_024939	NP_079215	Q9H6T0	ESRP2_HUMAN	RNA binding motif protein 35B	721					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding|nucleotide binding			ovary(1)	1						CCCATTCCTTGGGGGCTTGTA	0.542											OREG0023896	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	120					0	0	8.12818e-05	0	0
CDH3	1001	broad.mit.edu	37	16	68712430	68712430	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:68712430C>A	uc002ewf.2	+	5	1549	c.417C>A	c.(415-417)ACC>ACA	p.T139T	CDH3_uc010vli.1_Silent_p.T84T	NM_001793	NP_001784	P22223	CADH3_HUMAN	cadherin 3, type 1 preproprotein	139	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|response to stimulus|visual perception	integral to membrane	calcium ion binding	p.?(1)		ovary(3)|breast(1)|skin(1)	5		Ovarian(137;0.0564)		OV - Ovarian serous cystadenocarcinoma(108;0.000782)|Epithelial(162;0.0054)|all cancers(182;0.0384)		ATAGAGACACCAAGATTTTCT	0.488													10	165					3.86212e-05	0.000457303	0.000673444	1	0
TMCO7	79613	broad.mit.edu	37	16	68912115	68912115	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:68912115C>G	uc002ewi.3	+	6	1238	c.1226C>G	c.(1225-1227)CCA>CGA	p.P409R		NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	409						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		AGAGAACGCCCACATTTGGCA	0.433													4	100					0	0	0.00024832	0	0
TMCO7	79613	broad.mit.edu	37	16	69007972	69007972	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:69007972C>T	uc002ewi.3	+	15	2755	c.2743C>T	c.(2743-2745)CCG>TCG	p.P915S		NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	915						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		GAAAATCTTGCCGGACTTGTT	0.453													4	24					0	0	0.00024832	0	0
CIRH1A	84916	broad.mit.edu	37	16	69188305	69188305	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:69188305G>C	uc002ews.3	+	10	1205	c.1109G>C	c.(1108-1110)GGG>GCG	p.G370A	CIRH1A_uc002ewr.2_Missense_Mutation_p.G370A|CIRH1A_uc002ewt.3_Missense_Mutation_p.G287A|CIRH1A_uc010cfi.2_Intron	NM_032830	NP_116219	Q969X6	CIR1A_HUMAN	cirhin	370						nucleolus	protein binding				0				OV - Ovarian serous cystadenocarcinoma(108;0.125)		GGCAAGAATGGGGATACTCTT	0.348													4	76					0	0	0.000602214	0	0
NFAT5	10725	broad.mit.edu	37	16	69680966	69680966	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:69680966G>C	uc002exm.1	+	3	1443	c.235G>C	c.(235-237)GGT>CGT	p.G79R	NFAT5_uc002exh.1_Silent_p.A12A|NFAT5_uc002exi.2_Missense_Mutation_p.G3R|NFAT5_uc002exj.1_Missense_Mutation_p.G3R|NFAT5_uc002exk.1_Missense_Mutation_p.G3R|NFAT5_uc002exl.1_Missense_Mutation_p.G97R|NFAT5_uc002exn.1_Missense_Mutation_p.G97R	NM_006599	NP_006590	O94916	NFAT5_HUMAN	nuclear factor of activated T-cells 5 isoform c	79	Ser-rich.				excretion|signal transduction|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						CTCCATGGGCGGTGCTTGCAG	0.507													4	216					0	0	3.59834e-05	0	0
PMFBP1	83449	broad.mit.edu	37	16	72166783	72166783	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:72166783C>A	uc002fcc.3	-	10	1483	c.1311G>T	c.(1309-1311)ATG>ATT	p.M437I	PMFBP1_uc002fcd.2_Missense_Mutation_p.M437I|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.M292I	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	437	Potential.									ovary(2)	2		Ovarian(137;0.179)				GTTCTGTGGCCATGCACTGCT	0.517													7	183					0.000673444	0.00655963	0.000673444	1	0
WDR59	79726	broad.mit.edu	37	16	74951874	74951874	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:74951874G>C	uc002fdh.1	-	11	1021	c.919C>G	c.(919-921)CGG>GGG	p.R307G	WDR59_uc002fdi.2_Missense_Mutation_p.R307G|WDR59_uc002fdj.2_Missense_Mutation_p.R307G|WDR59_uc002fdg.1_5'Flank	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	307	WD 6.									ovary(1)|breast(1)	2						GTCTGATCCCGGGACCACGTC	0.453													4	143					0	0	0.000157383	0	0
WDR59	79726	broad.mit.edu	37	16	74972159	74972159	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:74972159G>C	uc002fdh.1	-	8	642	c.540C>G	c.(538-540)CCC>CCG	p.P180P	WDR59_uc002fdi.2_Silent_p.P180P|WDR59_uc002fdj.2_Silent_p.P180P	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	180	WD 3.									ovary(1)|breast(1)	2						CTGCTGTACTGGGTTTCTGCA	0.468													4	129					0	0	8.12818e-05	0	0
GABARAPL2	11345	broad.mit.edu	37	16	75601934	75601934	+	Splice_Site	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:75601934G>C	uc002fen.2	+	3	227	c.91_splice	c.e3-1	p.V31_splice	GABARAPL2_uc010cgy.2_Intron	NM_007285	NP_009216	P60520	GBRL2_HUMAN	GABA(A) receptor-associated protein-like 2						autophagy|intra-Golgi vesicle-mediated transport|positive regulation of ATPase activity|protein transport	autophagic vacuole membrane|cytosol|Golgi membrane|membrane fraction	ATPase binding|beta-tubulin binding|GABA receptor binding|microtubule binding|SNARE binding			ovary(1)	1						TACTTTCCCAGGTGATTGTGG	0.493													4	136					0	0	0.000157383	0	0
PKD1L2	114780	broad.mit.edu	37	16	81224292	81224292	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:81224292C>G	uc002fgh.1	-	9	1649	c.1649G>C	c.(1648-1650)GGG>GCG	p.G550A	PKD1L2_uc002fgj.2_Missense_Mutation_p.G550A	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	550	REJ.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGCATTCATCCCAGATGGTTC	0.413													4	164					0	0	0.000157383	0	0
PLCG2	5336	broad.mit.edu	37	16	81944267	81944267	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:81944267G>C	uc002fgt.2	+	18	2028	c.1876G>C	c.(1876-1878)GAG>CAG	p.E626Q	PLCG2_uc010chg.1_Missense_Mutation_p.E626Q	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	626	SH2 1.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						GCGCTGCGCCGAGTTCGAGCT	0.642													4	156					0	0	0.000157383	0	0
MBTPS1	8720	broad.mit.edu	37	16	84100180	84100180	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:84100180G>C	uc002fhi.2	-	17	2769	c.2267C>G	c.(2266-2268)CCA>CGA	p.P756R	MBTPS1_uc002fhh.2_Missense_Mutation_p.P260R	NM_003791	NP_003782	Q14703	MBTP1_HUMAN	membrane-bound transcription factor site-1	756	Lumenal (Potential).				cholesterol metabolic process|proteolysis	endoplasmic reticulum lumen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	serine-type endopeptidase activity			ovary(2)	2						ATTCAGAGCTGGGATGTTAGC	0.522													4	62					0	0	3.59834e-05	0	0
MBTPS1	8720	broad.mit.edu	37	16	84132690	84132690	+	Missense_Mutation	SNP	C	G	G	rs148577579	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:84132690C>G	uc002fhi.2	-	3	891	c.389G>C	c.(388-390)CGA>CCA	p.R130P		NM_003791	NP_003782	Q14703	MBTP1_HUMAN	membrane-bound transcription factor site-1	130					cholesterol metabolic process|proteolysis	endoplasmic reticulum lumen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	serine-type endopeptidase activity			ovary(2)	2						AAAGACTTTTCGTTGGGGCGT	0.353													4	134					0	0	3.59834e-05	0	0
MAP1LC3B	81631	broad.mit.edu	37	16	87432441	87432441	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:87432441C>G	uc002fjx.2	+	2	294	c.61C>G	c.(61-63)CGA>GGA	p.R21G	MAP1LC3B_uc010chs.2_RNA	NM_022818	NP_073729	Q9GZQ8	MLP3B_HUMAN	microtubule-associated proteins 1A/1B light	21					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|endomembrane system|microtubule	protein binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0249)		AGAAGATGTCCGACTTATTCG	0.493													4	150					0	0	8.12818e-05	0	0
ZCCHC14	23174	broad.mit.edu	37	16	87525461	87525461	+	Splice_Site	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:87525461C>G	uc002fjz.1	-	1	1	c.-26_splice	c.e1-1		ZCCHC14_uc002fka.1_Splice_Site|uc002fkc.1_5'Flank	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	zinc finger, CCHC domain containing 14						cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			upper_aerodigestive_tract(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0285)		ACTCATCGCCCGTGCGGCCCT	0.647													3	39					0	0	6.4e-05	0	0
APRT	353	broad.mit.edu	37	16	88876845	88876845	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:88876845G>T	uc002flv.2	-	3	342	c.307C>A	c.(307-309)CTG>ATG	p.L103M	APRT_uc002flw.2_Missense_Mutation_p.L103M	NM_000485	NP_000476	P07741	APT_HUMAN	adenine phosphoribosyltransferase isoform a	103					purine ribonucleoside salvage	cytosol|nucleus	adenine phosphoribosyltransferase activity|AMP binding|protein binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0477)	Adenine(DB00173)|Adenosine monophosphate(DB00131)	CCGTACTCCAGGGAATAGGAG	0.662													6	36					0.000274275	0.00290969	0.000274275	1	0
ANKRD11	29123	broad.mit.edu	37	16	89349764	89349764	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:89349764G>T	uc002fmx.1	-	9	3647	c.3186C>A	c.(3184-3186)ACC>ACA	p.T1062T	ANKRD11_uc002fmy.1_Silent_p.T1062T|ANKRD11_uc002fnc.1_Silent_p.T1062T|ANKRD11_uc002fnb.1_Silent_p.T1019T	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1062	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GTTTTTCCTTGGTATCTTTTT	0.378													10	303					0.000673444	0.00655963	0.000673444	1	0
SPG7	6687	broad.mit.edu	37	16	89597204	89597204	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:89597204G>A	uc002fnj.2	+	7	996	c.975G>A	c.(973-975)GTG>GTA	p.V325V	SPG7_uc002fni.2_Silent_p.V325V	NM_003119	NP_003110	Q9UQ90	SPG7_HUMAN	spastic paraplegia 7 isoform 1	325	Mitochondrial matrix (Potential).				cell death|nervous system development|protein catabolic process|proteolysis	integral to membrane|mitochondrial membrane	ATP binding|metalloendopeptidase activity|nucleoside-triphosphatase activity|unfolded protein binding|zinc ion binding				0		all_hematologic(23;0.00824)|Colorectal(91;0.102)		all cancers(4;1.39e-07)|OV - Ovarian serous cystadenocarcinoma(4;5.64e-06)|BRCA - Breast invasive adenocarcinoma(80;0.015)		GCGAGTTTGTGGATTATCTGA	0.582													5	85					0	0	3.59834e-05	0	0
TIMM22	29928	broad.mit.edu	37	17	904266	904266	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:904266G>C	uc002fsc.2	+	4	549	c.523G>C	c.(523-525)GGG>CGG	p.G175R		NM_013337	NP_037469	Q9Y584	TIM22_HUMAN	translocase of inner mitochondrial membrane 22	175	Helical; (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	protein transporter activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.022)		CTTAAAGGCTGGGGCCATTGG	0.532													5	235					0	0	3.59834e-05	0	0
C17orf91	84981	broad.mit.edu	37	17	1617064	1617064	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:1617064G>C	uc002ftf.2	-	3	409	c.77C>G	c.(76-78)CCA>CGA	p.P26R	C17orf91_uc002ftg.2_Missense_Mutation_p.P26R|WDR81_uc002fth.2_5'Flank|WDR81_uc010vqp.1_5'Flank	NM_032895	NP_116284			hypothetical protein LOC84981												0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		GCTCCTTGCTGGGCCAATCTG	0.512													4	91					0	0	0.00024832	0	0
WDR81	124997	broad.mit.edu	37	17	1637235	1637235	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:1637235A>T	uc002fti.2	+	7	1484	c.1223A>T	c.(1222-1224)CAC>CTC	p.H408L	WDR81_uc002fth.2_Missense_Mutation_p.H584L|WDR81_uc010vqp.1_Missense_Mutation_p.H432L|WDR81_uc002ftj.2_Missense_Mutation_p.H1635L|WDR81_uc010vqq.1_Missense_Mutation_p.H266L	NM_001163811	NP_001157283	Q562E7	WDR81_HUMAN	WD repeat domain 81 isoform 4	408										skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		GCCCACTTTCACTTCCACCAG	0.652													6	87					0	0	3.59834e-05	0	0
SMG6	23293	broad.mit.edu	37	17	2202583	2202583	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:2202583C>G	uc002fub.1	-	2	1519	c.1464G>C	c.(1462-1464)TGG>TGC	p.W488C	SMG6_uc002fud.1_Missense_Mutation_p.W457C	NM_017575	NP_060045	Q86US8	EST1A_HUMAN	Smg-6 homolog, nonsense mediated mRNA decay	488	Interaction with telomeric DNA.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation|telomere maintenance	chromosome, telomeric region|cytosol|nucleolus|telomerase holoenzyme complex	endoribonuclease activity|metal ion binding|protein binding|telomeric DNA binding			central_nervous_system(2)|lung(1)|kidney(1)	4						GTGAGTCACCCCAAGATGTAG	0.507													5	261					0	0	0.000157383	0	0
PAFAH1B1	5048	broad.mit.edu	37	17	2579866	2579866	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:2579866G>C	uc002fuw.3	+	9	1536	c.968G>C	c.(967-969)TGG>TCG	p.W323S	PAFAH1B1_uc010ckb.1_Intron|PAFAH1B1_uc010vqz.1_Intron	NM_000430	NP_000421	P43034	LIS1_HUMAN	platelet-activating factor acetylhydrolase,	323	WD 5.|Interaction with dynein and dynactin.				acrosome assembly|actin cytoskeleton organization|adult locomotory behavior|brain morphogenesis|corpus callosum morphogenesis|establishment of mitotic spindle orientation|G2/M transition of mitotic cell cycle|hippocampus development|layer formation in cerebral cortex|learning or memory|lipid catabolic process|microtubule organizing center organization|mitotic prometaphase|neuroblast proliferation|neuromuscular process controlling balance|neuron migration|platelet activating factor metabolic process|regulation of Rho GTPase activity|retrograde axon cargo transport|synaptic transmission|vesicle transport along microtubule	astral microtubule|cell cortex|centrosome|cytosol|kinetochore|motile primary cilium|nuclear membrane|perinuclear region of cytoplasm	dynactin binding|heparin binding|microtubule binding|phospholipase binding|phosphoprotein binding|protein homodimerization activity			skin(1)	1						ATTAAGATGTGGGATGTCAGT	0.368													4	110					0	0	3.59834e-05	0	0
OR3A1	4994	broad.mit.edu	37	17	3195183	3195183	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:3195183G>A	uc002fvh.1	-	1	694	c.694C>T	c.(694-696)CGC>TGC	p.R232C		NM_002550	NP_002541	P47881	OR3A1_HUMAN	olfactory receptor, family 3, subfamily A,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(2)|central_nervous_system(1)	3						TCTACAGAGCGAATTCGCAGG	0.493													12	50					0	0	0.00010058	0	0
TRPV3	162514	broad.mit.edu	37	17	3427559	3427559	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:3427559C>G	uc002fvt.1	-	13	1998	c.1676G>C	c.(1675-1677)TGG>TCG	p.W559S	TRPV3_uc002fvs.1_RNA|TRPV3_uc010vrh.1_Missense_Mutation_p.W543S|TRPV3_uc010vri.1_Missense_Mutation_p.W514S|TRPV3_uc010vrj.1_Missense_Mutation_p.W543S|TRPV3_uc010vrk.1_RNA|TRPV3_uc010vrl.1_Missense_Mutation_p.W543S|TRPV3_uc010vrm.1_RNA|TRPV3_uc002fvr.2_Missense_Mutation_p.W559S|TRPV3_uc002fvu.2_Missense_Mutation_p.W559S|TRPV3_uc010vrn.1_Silent_p.L121L	NM_145068	NP_659505	Q8NET8	TRPV3_HUMAN	transient receptor potential cation channel,	559	Helical; (Potential).					integral to membrane	calcium channel activity			ovary(4)	4					Menthol(DB00825)	CATGTTCGCCCAGCCCAGGGC	0.562													4	102					0	0	0.00024832	0	0
SHPK	23729	broad.mit.edu	37	17	3526734	3526734	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:3526734C>G	uc002fvz.1	-	4	649	c.546G>C	c.(544-546)GTG>GTC	p.V182V		NM_013276	NP_037408	Q9UHJ6	SHPK_HUMAN	carbohydrate kinase-like	182					carbohydrate metabolic process	cytoplasm	ATP binding|sedoheptulokinase activity			ovary(1)	1				COAD - Colon adenocarcinoma(5;0.0828)		GCATGGCAACCACATAGTCGT	0.512													4	135					0	0	3.59834e-05	0	0
ATP2A3	489	broad.mit.edu	37	17	3839694	3839694	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:3839694C>G	uc002fxb.1	-	16	2542	c.2391G>C	c.(2389-2391)CTG>CTC	p.L797L	ATP2A3_uc002fwx.1_Silent_p.L797L|ATP2A3_uc002fwy.1_Silent_p.L797L|ATP2A3_uc002fwz.1_Silent_p.L797L|ATP2A3_uc002fxa.1_Silent_p.L797L|ATP2A3_uc002fxc.1_Silent_p.L797L|ATP2A3_uc002fxd.1_Silent_p.L797L	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	797	Helical; Name=6; (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		CGTCTGTCACCAGGTTCACCC	0.627													4	99					0	0	0.000157383	0	0
ATP2A3	489	broad.mit.edu	37	17	3856676	3856676	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:3856676C>A	uc002fxb.1	-	3	335	c.184G>T	c.(184-186)GTG>TTG	p.V62L	ATP2A3_uc002fwx.1_Missense_Mutation_p.V62L|ATP2A3_uc002fwy.1_Missense_Mutation_p.V62L|ATP2A3_uc002fwz.1_Missense_Mutation_p.V62L|ATP2A3_uc002fxa.1_Missense_Mutation_p.V62L|ATP2A3_uc002fxc.1_Missense_Mutation_p.V62L|ATP2A3_uc002fxd.1_Missense_Mutation_p.V62L	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	62	Helical; Name=1; (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		AGGATGCGCACCAGGAGGTCC	0.647													5	66					6.5536e-12	8.75845e-11	0.000157383	1	0
ZZEF1	23140	broad.mit.edu	37	17	3999944	3999945	+	Nonsense_Mutation	DNP	CG	AC	AC			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:3999944_3999945CG>AC	uc002fxe.2	-	10	1786_1787	c.1722_1723CG>GT	c.(1720-1725)ACCGGA>ACGTGA	p.G575*	ZZEF1_uc002fxk.1_Nonsense_Mutation_p.G575*	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	575							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GATTCAGTTCCGGTAGAAAAAA	0.342													7	215					0	0	6.4e-05	0	0
ANKFY1	51479	broad.mit.edu	37	17	4098738	4098738	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:4098738C>G	uc002fxq.1	-	9	1170	c.1132G>C	c.(1132-1134)GGG>CGG	p.G378R	ANKFY1_uc002fxn.2_Missense_Mutation_p.G420R|ANKFY1_uc002fxo.2_Missense_Mutation_p.G378R|ANKFY1_uc002fxp.2_Missense_Mutation_p.G377R|ANKFY1_uc010ckp.2_Missense_Mutation_p.G319R|ANKFY1_uc002fxr.2_Missense_Mutation_p.G378R	NM_016376	NP_057460	Q9P2R3	ANFY1_HUMAN	ankyrin repeat and FYVE domain containing 1	378	ANK 5.					endosome membrane	metal ion binding|protein binding			ovary(2)|skin(1)	3						TATTCATTCCCGGCCATGATG	0.527													7	298					0	0	0.000978159	0	0
ANKFY1	51479	broad.mit.edu	37	17	4111378	4111378	+	Splice_Site	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:4111378C>A	uc002fxq.1	-	6	621	c.583_splice	c.e6-1	p.D195_splice	ANKFY1_uc002fxn.2_Splice_Site_p.D237_splice|ANKFY1_uc002fxo.2_Splice_Site_p.D195_splice|ANKFY1_uc002fxp.2_Splice_Site_p.D195_splice|ANKFY1_uc010ckp.2_Splice_Site_p.D136_splice|ANKFY1_uc002fxr.2_Splice_Site_p.D195_splice	NM_016376	NP_057460	Q9P2R3	ANFY1_HUMAN	ankyrin repeat and FYVE domain containing 1							endosome membrane	metal ion binding|protein binding			ovary(2)|skin(1)	3						TCAGGTCGTCCTGAGAATTCA	0.333													7	90					0.000274275	0.00290969	0.000274275	1	0
PELP1	27043	broad.mit.edu	37	17	4577907	4577907	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:4577907G>C	uc002fyi.3	-	13	1706	c.1480C>G	c.(1480-1482)CCC>GCC	p.P494A	PELP1_uc010vsf.1_Missense_Mutation_p.P347A	NM_014389	NP_055204	Q8IZL8	PELP1_HUMAN	proline, glutamic acid and leucine rich protein	494					transcription, DNA-dependent	cytoplasm|MLL1 complex	protein binding	p.P544T(1)		ovary(1)|central_nervous_system(1)	2						AGCTTCTTGGGGGCGCTAGGC	0.592													4	46					0	0	0.00024832	0	0
ARRB2	409	broad.mit.edu	37	17	4620555	4620555	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:4620555C>A	uc002fyj.2	+	6	629	c.401C>A	c.(400-402)CCA>CAA	p.P134Q	ARRB2_uc002fyk.2_Missense_Mutation_p.P119Q|ARRB2_uc002fyl.2_Missense_Mutation_p.P134Q|ARRB2_uc010vsg.1_Missense_Mutation_p.P155Q|ARRB2_uc002fym.2_Missense_Mutation_p.P119Q|ARRB2_uc002fyn.2_5'UTR|ARRB2_uc010ckq.2_5'UTR|ARRB2_uc002fyo.2_5'UTR	NM_004313	NP_004304	P32121	ARRB2_HUMAN	arrestin, beta 2 isoform 1	134					cell chemotaxis|desensitization of G-protein coupled receptor protein signaling pathway by arrestin|G-protein coupled receptor internalization|negative regulation of natural killer cell mediated cytotoxicity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|platelet activation|positive regulation of ERK1 and ERK2 cascade|proteasomal ubiquitin-dependent protein catabolic process|protein transport|protein ubiquitination|transcription from RNA polymerase II promoter|transforming growth factor beta receptor signaling pathway	coated pit|cytoplasmic membrane-bounded vesicle|cytosol|nucleus|plasma membrane	angiotensin receptor binding|ubiquitin protein ligase binding				0						CAGCCAGGCCCAGAGGATACA	0.587													6	82					0.000673444	0.00655963	0.000673444	1	0
PSMB6	5694	broad.mit.edu	37	17	4701596	4701596	+	Missense_Mutation	SNP	G	C	C	rs150542791		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:4701596G>C	uc002fzb.2	+	6	632	c.599G>C	c.(598-600)CGG>CCG	p.R200P		NM_002798	NP_002789	P28072	PSB6_HUMAN	proteasome beta 6 subunit precursor	200					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity			ovary(2)	2						GCCATGGAGCGGGATGGCTCC	0.547													4	184					0	0	0.000157383	0	0
C1QBP	708	broad.mit.edu	37	17	5341522	5341522	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:5341522G>C	uc002gby.1	-	2	382	c.304C>G	c.(304-306)CTC>GTC	p.L102V		NM_001212	NP_001203	Q07021	C1QBP_HUMAN	complement component 1, q subcomponent binding	102					blood coagulation, intrinsic pathway|immune response|interspecies interaction between organisms	mitochondrial matrix|nucleus|plasma membrane				ovary(1)	1						ATCTTAGGGAGGGTTTTATGC	0.418													4	175					0	0	3.59834e-05	0	0
CHRNB1	1140	broad.mit.edu	37	17	7352034	7352034	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:7352034G>T	uc002ghb.2	+	7	788	c.747G>T	c.(745-747)CTG>CTT	p.L249L	CHRNB1_uc010vty.1_Silent_p.L177L|CHRNB1_uc010vtz.1_Silent_p.L83L	NM_000747	NP_000738	P11230	ACHB_HUMAN	nicotinic acetylcholine receptor beta 1 subunit	249	Helical; (Potential).				behavioral response to nicotine|muscle contraction|muscle fiber development|neuromuscular synaptic transmission|postsynaptic membrane organization|regulation of membrane potential|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine binding|receptor activity			ovary(2)	2		Prostate(122;0.157)				TCTTCTACCTGGTCAACGTCA	0.567													7	92					0.000442599	0.00445669	0.000442599	1	0
WRAP53	55135	broad.mit.edu	37	17	7605023	7605023	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:7605023C>G	uc010vuh.1	+	7	1026	c.871C>G	c.(871-873)CAG>GAG	p.Q291E	WRAP53_uc010vui.1_Missense_Mutation_p.Q291E|WRAP53_uc002gip.2_Missense_Mutation_p.Q291E|WRAP53_uc002gir.2_Missense_Mutation_p.Q291E|WRAP53_uc002giq.2_RNA|WRAP53_uc010cnl.2_Missense_Mutation_p.Q258E|WRAP53_uc010vuj.1_Missense_Mutation_p.Q72E	NM_001143990	NP_001137462	Q9BUR4	WAP53_HUMAN	WD repeat domain 79 isoform 2	291	WD 3.				positive regulation of telomerase activity|telomere formation via telomerase	Cajal body|cytoplasm|telomerase holoenzyme complex	protein binding|RNA binding				0						GGATGGCTCCCAGCTCTTCTG	0.602													4	84					0	0	3.59834e-05	0	0
DNAH2	146754	broad.mit.edu	37	17	7644256	7644256	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:7644256C>A	uc002giu.1	+	10	1649	c.1635C>A	c.(1633-1635)TCC>TCA	p.S545S	DNAH2_uc002git.2_Silent_p.S627S|DNAH2_uc010vuk.1_Silent_p.S545S	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	545	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CCCAGTATTCCGGAAAGGCGC	0.582													6	109					0.000157383	0.00173811	0.000157383	1	0
DNAH2	146754	broad.mit.edu	37	17	7734483	7734483	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:7734483G>C	uc002giu.1	+	79	12324	c.12310G>C	c.(12310-12312)GGC>CGC	p.G4104R	DNAH2_uc010cnm.1_Missense_Mutation_p.G1042R	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	4104	TPR 4.				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CTTATTGCCTGGCATGGACCC	0.502													4	255					0	0	0.00024832	0	0
CHD3	1107	broad.mit.edu	37	17	7800596	7800596	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:7800596C>G	uc002gje.2	+	11	2053	c.1903C>G	c.(1903-1905)CGC>GGC	p.R635G	CHD3_uc002gjd.2_Missense_Mutation_p.R694G|CHD3_uc002gjf.2_Missense_Mutation_p.R635G|CHD3_uc002gjg.1_Missense_Mutation_p.R463G	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	635	Chromo 2.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				GACCGTCCACCGCATCATCAA	0.493													3	57					0	0	0.00024832	0	0
C17orf68	80169	broad.mit.edu	37	17	8135781	8135781	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:8135781C>A	uc002gkq.3	-	12	2017	c.1958G>T	c.(1957-1959)CGG>CTG	p.R653L	C17orf68_uc010cnv.2_RNA	NM_025099	NP_079375	Q2NKJ3	CTC1_HUMAN	alpha accessory factor 132	653					positive regulation of DNA replication|telomere maintenance	Stn1-Ten1 complex	protein binding|single-stranded DNA binding				0						CCTCTCTGCCCGCACCAGGCA	0.552													6	124					3.59834e-05	0.000429	3.59834e-05	1	0
ARHGEF15	22899	broad.mit.edu	37	17	8222167	8222167	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:8222167C>G	uc002glc.2	+	12	2093	c.1972C>G	c.(1972-1974)CGC>GGC	p.R658G	ARHGEF15_uc002gld.2_Missense_Mutation_p.R658G|ARHGEF15_uc010vuw.1_Missense_Mutation_p.R547G	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	658					negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CTCGCGCCCCCGCTTCACCCC	0.647													4	212					0	0	3.59834e-05	0	0
MYH10	4628	broad.mit.edu	37	17	8449900	8449900	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:8449900C>A	uc002gll.2	-	11	1306	c.1210G>T	c.(1210-1212)GGC>TGC	p.G404C	MYH10_uc002glm.2_Missense_Mutation_p.G414C|MYH10_uc010cnx.2_Missense_Mutation_p.G413C	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	404	Myosin head-like.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						TAGTCTCGGCCGACCTTGATC	0.468													5	64					8.12818e-05	0.000938396	8.12818e-05	1	0
MYH8	4626	broad.mit.edu	37	17	10317756	10317756	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:10317756C>T	uc002gmm.2	-	10	946	c.851G>A	c.(850-852)AGA>AAA	p.R284K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	284	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						ATGGTAGCTTCTTTCCGCCTT	0.318									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				13	80					0	0	0.000308642	0	0
MYH4	4622	broad.mit.edu	37	17	10346754	10346754	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:10346754G>C	uc002gmn.2	-	40	5869	c.5758C>G	c.(5758-5760)CAA>GAA	p.Q1920E	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1920	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TTGTTGACTTGGGACTCAGCA	0.468													4	132					0	0	0.00024832	0	0
MYH4	4622	broad.mit.edu	37	17	10358500	10358500	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:10358500C>G	uc002gmn.2	-	20	2398	c.2287G>C	c.(2287-2289)GGT>CGT	p.G763R	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	763	Myosin head-like.|Actin-binding (By similarity).				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TTGGTATGACCGAATTTGTAC	0.383													4	113					0	0	0.00024832	0	0
MYH1	4619	broad.mit.edu	37	17	10406562	10406562	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:10406562C>T	uc002gmo.2	-	23	2789	c.2695G>A	c.(2695-2697)GCT>ACT	p.A899T	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	899	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						AAGCTGTCAGCTTCCTGAGAA	0.353													10	162					0	0	0.000673444	0	0
MYH1	4619	broad.mit.edu	37	17	10415239	10415239	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:10415239G>C	uc002gmo.2	-	14	1427	c.1333C>G	c.(1333-1335)CGC>GGC	p.R445G	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	445	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TGGTTGATGCGGGTGACCATC	0.463													5	135					0	0	3.59834e-05	0	0
MYH2	4620	broad.mit.edu	37	17	10447416	10447416	+	Splice_Site	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:10447416C>G	uc010coi.2	-	6	661	c.533_splice	c.e6+1	p.T178_splice	uc002gml.1_Intron|MYH2_uc002gmp.3_Splice_Site_p.T178_splice|MYH2_uc010coj.2_Splice_Site_p.T178_splice	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa						muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						AATCTACTTACGTGATCAGGA	0.343													3	88					0	0	0.00024832	0	0
MYH3	4621	broad.mit.edu	37	17	10535807	10535807	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:10535807G>C	uc002gmq.1	-	33	5019	c.4942C>G	c.(4942-4944)CAG>GAG	p.Q1648E		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1648	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						AGCTGTCCCTGGACACTCCTG	0.468													5	106					0	0	0.000602214	0	0
ELAC2	60528	broad.mit.edu	37	17	12917776	12917776	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:12917776G>T	uc002gnz.3	-	5	565	c.470C>A	c.(469-471)CCA>CAA	p.P157Q	ELAC2_uc010vvo.1_5'Flank|ELAC2_uc010vvp.1_Missense_Mutation_p.P138Q|ELAC2_uc010vvq.1_Missense_Mutation_p.P157Q|ELAC2_uc010vvr.1_Missense_Mutation_p.P157Q	NM_018127	NP_060597	Q9BQ52	RNZ2_HUMAN	elaC homolog 2 isoform 1	157					tRNA processing	nucleus	endonuclease activity|metal ion binding|protein binding				0						TCCTTTCAATGGACCAGAAAA	0.343									Hereditary_Prostate_Cancer				8	204					0.000442599	0.00445669	0.000442599	1	0
CDRT15	146822	broad.mit.edu	37	17	14140102	14140102	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:14140102C>T	uc010vvu.1	-	1	49	c.49G>A	c.(49-51)GGA>AGA	p.G17R	CDRT15_uc010coq.2_RNA	NM_001007530	NP_001007531	Q96T59	CDRTF_HUMAN	CMT1A duplicated region transcript 15	17											0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)		TCACTCCCTCCATTCCTGAAG	0.562													7	54					0	0	0.000274275	0	0
TTC19	54902	broad.mit.edu	37	17	15906112	15906112	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:15906112C>A	uc002gph.1	+	4	810	c.792C>A	c.(790-792)GCC>GCA	p.A264A	TTC19_uc010cox.1_RNA	NM_017775	NP_060245	Q6DKK2	TTC19_HUMAN	tetratricopeptide repeat domain 19	143	TPR 1.				cell cycle|cytokinesis|mitochondrial respiratory chain complex III assembly	centrosome|midbody|mitochondrial inner membrane	protein binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		TTCAGATGGCCAACTTAGCAT	0.303													10	229					1.99824e-07	2.59546e-06	0.000566183	1	0
NCOR1	9611	broad.mit.edu	37	17	15974876	15974877	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:15974876_15974877GG>TT	uc002gpo.2	-	30	4238_4239	c.3998_3999CC>AA	c.(3997-3999)ACC>AAA	p.T1333K	NCOR1_uc002gpn.2_Missense_Mutation_p.T1349K|NCOR1_uc002gpp.1_Missense_Mutation_p.T1240K|NCOR1_uc010vwb.1_Intron|NCOR1_uc010coy.2_Missense_Mutation_p.T241K|NCOR1_uc010vwc.1_Missense_Mutation_p.T144K	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	1333	Interaction with ETO.				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GTTTTCCTTTGGTAATGGCACC	0.406													8	180					0	0	6.4e-05	0	0
UBB	7314	broad.mit.edu	37	17	16285497	16285497	+	Silent	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:16285497A>G	uc002gpx.2	+	2	414	c.276A>G	c.(274-276)GAA>GAG	p.E92E	UBB_uc010vwe.1_Intron	NM_018955	NP_061828	P0CG47	UBB_HUMAN	ubiquitin B precursor	92	Ubiquitin-like 2.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)		TCACCCTGGAAGTGGAGCCCA	0.557													4	130					0	0	0.000602214	0	0
ATPAF2	91647	broad.mit.edu	37	17	17929669	17929669	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:17929669C>G	uc002gse.1	-	4	539	c.386G>C	c.(385-387)CGG>CCG	p.R129P	ATPAF2_uc002gsd.1_RNA|ATPAF2_uc002gsf.1_RNA|ATPAF2_uc010cps.1_RNA	NM_145691	NP_663729	Q8N5M1	ATPF2_HUMAN	ATP synthase mitochondrial F1 complex assembly	129					proton-transporting ATP synthase complex assembly	mitochondrion|nuclear speck	protein binding				0	all_neural(463;0.228)					CACGGCTGCCCGGATCAGCTG	0.498													6	153					0	0	0.000978159	0	0
C17orf39	79018	broad.mit.edu	37	17	17965254	17965254	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:17965254C>A	uc002gsg.1	+	5	972	c.804C>A	c.(802-804)TCC>TCA	p.S268S		NM_024052	NP_076957	Q8IVV7	CQ039_HUMAN	hypothetical protein LOC79018	268										skin(1)	1	all_neural(463;0.228)					CAGCAGCCTCCATAGAGGGCT	0.542													8	141					5.50884e-06	6.81381e-05	0.00010058	1	0
SHMT1	6470	broad.mit.edu	37	17	18257108	18257108	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:18257108C>A	uc002gta.2	-	3	310	c.120G>T	c.(118-120)GAG>GAT	p.E40D	SHMT1_uc002gtb.2_Missense_Mutation_p.E40D|SHMT1_uc010cqb.2_Missense_Mutation_p.E40D|SHMT1_uc010vxt.1_5'UTR|SHMT1_uc002gtd.1_Missense_Mutation_p.E40D|SHMT1_uc010vxu.1_Missense_Mutation_p.E40D	NM_004169	NP_004160	P34896	GLYC_HUMAN	serine hydroxymethyltransferase 1 (soluble)	40					carnitine biosynthetic process|folic acid metabolic process|L-serine catabolic process|one-carbon metabolic process|purine base biosynthetic process	cytosol|nucleus	glycine hydroxymethyltransferase activity|protein homodimerization activity|pyridoxal phosphate binding			ovary(1)	1					Glycine(DB00145)|Mimosine(DB01055)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	GCCGGTTACTCTCCTTCTTAA	0.403													8	211					0.000978159	0.00917326	0.000978159	1	0
PRPSAP2	5636	broad.mit.edu	37	17	18785899	18785899	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:18785899C>G	uc002gup.1	+	7	642	c.431C>G	c.(430-432)ACT>AGT	p.T144S	PRPSAP2_uc002guo.1_Missense_Mutation_p.T58S|PRPSAP2_uc010vyi.1_Missense_Mutation_p.T92S|PRPSAP2_uc010vyj.1_Missense_Mutation_p.T58S|PRPSAP2_uc010vyk.1_Missense_Mutation_p.T132S	NM_002767	NP_002758	O60256	KPRB_HUMAN	phosphoribosyl pyrophosphate	144					nucleotide biosynthetic process		enzyme inhibitor activity|magnesium ion binding|ribose phosphate diphosphokinase activity			skin(1)	1						CATCTTATTACTATGGATTTA	0.259													6	401					0	0	0.000274275	0	0
SLC47A1	55244	broad.mit.edu	37	17	19458988	19458988	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:19458988C>A	uc002gvy.1	+	8	810	c.724C>A	c.(724-726)CAA>AAA	p.Q242K	SLC47A1_uc010vyy.1_RNA|SLC47A1_uc002gvx.2_Missense_Mutation_p.Q242K|SLC47A1_uc010vyz.1_Missense_Mutation_p.Q219K|SLC47A1_uc010cqp.1_Intron|SLC47A1_uc010cqq.1_Intron|SLC47A1_uc010vza.1_5'UTR|SLC47A1_uc010vzb.1_5'UTR|SLC47A1_uc010vzc.1_5'Flank|SNORA59B_uc002gvz.1_5'Flank	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	242	Cytoplasmic (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					AAAACTGCATCAAGCTACATG	0.502													7	90					8.12818e-05	0.000938396	8.12818e-05	1	0
AKAP10	11216	broad.mit.edu	37	17	19827758	19827758	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:19827758G>C	uc002gwo.2	-	11	1851	c.1714C>G	c.(1714-1716)CTG>GTG	p.L572V	AKAP10_uc002gwp.1_Missense_Mutation_p.L572V|AKAP10_uc010cqw.1_Missense_Mutation_p.L514V	NM_007202	NP_009133	O43572	AKA10_HUMAN	A-kinase anchor protein 10 precursor	572					blood coagulation|protein localization	cytosol|mitochondrion|plasma membrane	signal transducer activity			skin(1)	1	all_cancers(12;2.08e-05)|all_epithelial(12;0.00158)|Breast(13;0.165)					TCTGGATCCAGACTTGCCGCA	0.323													3	88					0	0	0.000602214	0	0
Unknown	0	broad.mit.edu	37	17	20332055	20332055	+	RNA	SNP	T	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:20332055T>G	uc010cqz.2	+	3		c.575T>G								Homo sapiens cDNA, FLJ17707.																		GCATATGCGGTGGGGGCAGCC	0.537													3	65					0	0	6.4e-05	0	0
SLC13A2	9058	broad.mit.edu	37	17	26821471	26821471	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:26821471A>T	uc002hbh.2	+	9	1316	c.1249A>T	c.(1249-1251)ATG>TTG	p.M417L	SLC13A2_uc010wam.1_Missense_Mutation_p.M373L|SLC13A2_uc010wan.1_Missense_Mutation_p.M466L|SLC13A2_uc010wao.1_Missense_Mutation_p.M374L|SLC13A2_uc002hbi.2_Missense_Mutation_p.M346L	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	417						integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	GAACCAGAAGATGCCGTGGAA	0.587											OREG0024276	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	92					0	0	0.000978159	0	0
KIAA0100	9703	broad.mit.edu	37	17	26962453	26962453	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:26962453G>A	uc002hbu.2	-	16	2251	c.2152C>T	c.(2152-2154)CGT>TGT	p.R718C		NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	718						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					TCAGGGGCACGGCCTTCTAGC	0.522													10	92					0	0	0.000442599	0	0
SDF2	6388	broad.mit.edu	37	17	26976102	26976102	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:26976102G>C	uc002hbw.2	-	3	580	c.541C>G	c.(541-543)CAG>GAG	p.Q181E	SDF2_uc002hbx.2_RNA	NM_006923	NP_008854	Q99470	SDF2_HUMAN	stromal cell-derived factor 2 precursor	181	MIR 3.				protein glycosylation	extracellular space|membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity				0	Lung NSC(42;0.00431)					TGACTTGGCTGGGCCATGCCA	0.507													4	124					0	0	8.12818e-05	0	0
RAB34	83871	broad.mit.edu	37	17	27042228	27042228	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:27042228G>T	uc002hce.2	-	7	1122	c.498C>A	c.(496-498)TCC>TCA	p.S166S	RAB34_uc002hcg.2_Intron|RAB34_uc002hcf.2_Silent_p.S167S|RAB34_uc010was.1_Silent_p.S223S|RAB34_uc010wat.1_Intron|RAB34_uc002hch.2_Silent_p.S166S|RAB34_uc010wau.1_Silent_p.S144S|RAB34_uc010wav.1_Silent_p.S224S	NM_031934	NP_114140	Q9BZG1	RAB34_HUMAN	Ras-related protein RAB34 isoform 1	166	GTP (By similarity).				protein transport|small GTPase mediated signal transduction	Golgi apparatus	GTP binding				0	Lung NSC(42;0.00431)					GATCCTTCTTGGAACCTACAA	0.577													5	51					0.000157383	0.00173811	0.000157383	1	0
TAOK1	57551	broad.mit.edu	37	17	27805327	27805327	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:27805327G>C	uc002hdz.1	+	6	605	c.411G>C	c.(409-411)CAG>CAC	p.Q137H	TAOK1_uc010wbe.1_Missense_Mutation_p.Q137H|TAOK1_uc010wbf.1_Missense_Mutation_p.Q137H|TAOK1_uc002heb.1_5'Flank	NM_020791	NP_065842	Q7L7X3	TAOK1_HUMAN	TAO kinase 1	137	Protein kinase.				mitotic prometaphase	cytosol|intracellular membrane-bounded organelle	ATP binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)|skin(1)	4			Colorectal(6;0.198)			GTGCTCTTCAGGGATTAGCCT	0.299													4	202					0	0	0.000602214	0	0
LRRC37B2	147172	broad.mit.edu	37	17	28961033	28961033	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:28961033T>G	uc002hfl.3	+	5	727	c.496T>G	c.(496-498)TAT>GAT	p.Y166D	LRRC37B2_uc010csj.1_Intron|LRRC37B2_uc010wbq.1_RNA|LRRC37B2_uc010csi.2_RNA					RecName: Full=Putative LRRC37B-like protein 2;												0						AGTTCCAGGATATGACTATAA	0.249													6	206					0	0	0.000274275	0	0
NF1	4763	broad.mit.edu	37	17	29679308	29679308	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:29679308C>A	uc002hgg.2	+	51	7824	c.7491C>A	c.(7489-7491)CCC>CCA	p.P2497P	NF1_uc002hgh.2_Silent_p.P2476P|NF1_uc010cso.2_Silent_p.P685P|NF1_uc010wbt.1_Intron|NF1_uc010wbu.1_RNA	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2497					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		GGTCCTCTCCCAAAGGTTCTG	0.478			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			7	71					1.58986e-06	2.00859e-05	0.000673444	1	0
UTP6	55813	broad.mit.edu	37	17	30216403	30216403	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:30216403G>T	uc002hgr.2	-	7	527	c.444C>A	c.(442-444)GCC>GCA	p.A148A	UTP6_uc002hgq.2_5'Flank|UTP6_uc010cst.2_Intron|UTP6_uc010wbw.1_Silent_p.A148A	NM_018428	NP_060898	Q9NYH9	UTP6_HUMAN	hepatocellular carcinoma-associated antigen 66	148	HAT 1.				rRNA processing	nucleolus	binding			ovary(1)	1		all_hematologic(16;0.0149)|Ovarian(249;0.021)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0257)|Breast(31;0.231)				TTTCCCATTTGGCTGCCATAA	0.373													9	300					2.17888e-05	0.000264662	0.000442599	1	0
UTP6	55813	broad.mit.edu	37	17	30219767	30219767	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:30219767C>A	uc002hgr.2	-	5	442	c.359G>T	c.(358-360)TGG>TTG	p.W120L	UTP6_uc010cst.2_Intron|UTP6_uc010wbw.1_Missense_Mutation_p.W120L	NM_018428	NP_060898	Q9NYH9	UTP6_HUMAN	hepatocellular carcinoma-associated antigen 66	120					rRNA processing	nucleolus	binding			ovary(1)	1		all_hematologic(16;0.0149)|Ovarian(249;0.021)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0257)|Breast(31;0.231)				TTTACTCACCCACTTCTTACA	0.408													6	71					0.000673444	0.00655963	0.000673444	1	0
LRRC37B	114659	broad.mit.edu	37	17	30362590	30362591	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:30362590_30362591GG>TT	uc002hgu.2	+	7	2066_2067	c.2055_2056GG>TT	c.(2053-2058)ATGGGA>ATTTGA	p.685_686MG>I*	LRRC37B_uc010wbx.1_Nonsense_Mutation_p.603_604MG>I*|LRRC37B_uc010csu.2_Nonsense_Mutation_p.634_635MG>I*	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	685_686	LRR 6.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				TCAGAGACATGGGAACAACACA	0.312													9	279					0	0	6.4e-05	0	0
CCL11	6356	broad.mit.edu	37	17	32612839	32612839	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:32612839C>T	uc002hia.1	+	1	153	c.12C>T	c.(10-12)TCC>TCT	p.S4S		NM_002986	NP_002977	P51671	CCL11_HUMAN	small inducible cytokine A11 precursor	4					cell adhesion|cellular calcium ion homeostasis|immune response|positive regulation of actin filament polymerization|positive regulation of cell migration|positive regulation of endothelial cell proliferation|positive regulation of Rac GTPase activity|protein phosphorylation|response to radiation|response to virus|signal transduction	extracellular space	chemokine activity				0	Breast(3;0.00224)	Breast(31;0.151)|Ovarian(249;0.17)		BRCA - Breast invasive adenocarcinoma(366;0.155)		TGAAGGTCTCCGCAGCACTTC	0.597													5	117					0	0	0.000274275	0	0
UNC45B	146862	broad.mit.edu	37	17	33491143	33491144	+	Missense_Mutation	DNP	CG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:33491143_33491144CG>TT	uc002hja.2	+	9	1206_1207	c.1109_1110CG>TT	c.(1108-1110)CCG>CTT	p.P370L	UNC45B_uc002hjb.2_Missense_Mutation_p.P370L|UNC45B_uc002hjc.2_Missense_Mutation_p.P370L|UNC45B_uc010cto.2_Missense_Mutation_p.P370L	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	370					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				CGCTGTGACCCGGAGCGCGATC	0.49													6	212					0	0	6.4e-05	0	0
SLFN5	162394	broad.mit.edu	37	17	33586577	33586577	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:33586577C>T	uc002hjf.3	+	2	985	c.868C>T	c.(868-870)CGT>TGT	p.R290C	SLFN5_uc002hje.2_Missense_Mutation_p.R290C|SLFN5_uc010wcg.1_Missense_Mutation_p.R290C	NM_144975	NP_659412	Q08AF3	SLFN5_HUMAN	schlafen family member 5	290					cell differentiation		ATP binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0191)		GGGGGCCCTCCGTGGATATGT	0.473													26	176					0	0	0.000227799	0	0
GAS2L2	246176	broad.mit.edu	37	17	34074128	34074128	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:34074128C>T	uc002hjv.1	-	5	1020	c.992G>A	c.(991-993)CGA>CAA	p.R331Q		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	331					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CCTCAGCCTTCGGTCTGAAGA	0.632													15	90					0	0	0.000308642	0	0
C17orf66	256957	broad.mit.edu	37	17	34192283	34192283	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:34192283G>C	uc002hke.1	-	3	405	c.256C>G	c.(256-258)CTG>GTG	p.L86V	C17orf66_uc010wck.1_RNA|C17orf66_uc010wcl.1_Missense_Mutation_p.L86V|C17orf66_uc010wcm.1_Missense_Mutation_p.L52V	NM_152781	NP_689994	A2RTY3	CQ066_HUMAN	hypothetical protein LOC256957	86							binding			breast(2)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		TGATCATACAGGTCGTGCCAG	0.517													4	90					0	0	8.12818e-05	0	0
GGNBP2	79893	broad.mit.edu	37	17	34937857	34937857	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:34937857C>A	uc002hnb.2	+	9	1353	c.1104C>A	c.(1102-1104)CTC>CTA	p.L368L	GGNBP2_uc002hna.2_Silent_p.L368L|GGNBP2_uc002hnc.1_Silent_p.L197L	NM_024835	NP_079111	Q9H3C7	GGNB2_HUMAN	zinc finger protein 403	368					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasmic membrane-bounded vesicle				ovary(2)	2		Breast(25;0.00957)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0193)		TAAGAGAACTCAAGCAAGAAA	0.363													9	143					0.000673444	0.00655963	0.000673444	1	0
ACACA	31	broad.mit.edu	37	17	35536331	35536331	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:35536331C>A	uc002hnm.2	-	41	5029	c.4838G>T	c.(4837-4839)TGG>TTG	p.W1613L	ACACA_uc002hnk.2_Missense_Mutation_p.W1535L|ACACA_uc002hnl.2_Missense_Mutation_p.W1555L|ACACA_uc002hnn.2_Missense_Mutation_p.W1613L|ACACA_uc002hno.2_Missense_Mutation_p.W1650L|ACACA_uc010cuy.2_Intron	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	1613					acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	CATAGACTCCCAGAGTTTGAT	0.403													7	64					0.000673444	0.00655963	0.000673444	1	0
Unknown	0	broad.mit.edu	37	17	37187725	37187725	+	RNA	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:37187725G>C	uc002hrd.1	+	1		c.1567G>C								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		CTTTGGACCTGGGACTTACCA	0.507													4	185					0	0	3.59834e-05	0	0
WIPF2	147179	broad.mit.edu	37	17	38433420	38433420	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:38433420C>A	uc002hug.1	+	7	1506	c.1266C>A	c.(1264-1266)CCC>CCA	p.P422P	WIPF2_uc002huh.1_Silent_p.P272P|WIPF2_uc010cww.1_Silent_p.P272P|WIPF2_uc002hui.1_Silent_p.P422P|WIPF2_uc010cwx.1_Silent_p.P164P|WIPF2_uc010cwy.1_Silent_p.P422P	NM_133264	NP_573571	Q8TF74	WIPF2_HUMAN	WIRE protein	422						cytoplasm|cytoskeleton	actin binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						GGATATATCCCAGCAAAACAA	0.343										HNSCC(43;0.11)			11	143					7.93312e-07	1.01146e-05	0.000219431	1	0
TOP2A	7153	broad.mit.edu	37	17	38555077	38555077	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:38555077C>A	uc002huq.2	-	26	3527	c.3401G>T	c.(3400-3402)TGG>TTG	p.W1134L		NM_001067	NP_001058	P11388	TOP2A_HUMAN	DNA topoisomerase II, alpha isozyme	1134					apoptotic chromosome condensation|DNA ligation|DNA repair|DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|phosphatidylinositol-mediated signaling|positive regulation of apoptosis|positive regulation of retroviral genome replication|resolution of meiotic recombination intermediates|sister chromatid segregation	cytoplasm|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|drug binding|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity|ubiquitin binding			ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7		Breast(137;0.00328)	STAD - Stomach adenocarcinoma(5;0.00183)		Amsacrine(DB00276)|Ciprofloxacin(DB00537)|Dexrazoxane(DB00380)|Doxorubicin(DB00997)|Enoxacin(DB00467)|Epirubicin(DB00445)|Etoposide(DB00773)|Fleroxacin(DB04576)|Gatifloxacin(DB01044)|Idarubicin(DB01177)|Levofloxacin(DB01137)|Lomefloxacin(DB00978)|Lucanthone(DB04967)|Mitoxantrone(DB01204)|Moxifloxacin(DB00218)|Norfloxacin(DB01059)|Ofloxacin(DB01165)|Pefloxacin(DB00487)|Podofilox(DB01179)|Sparfloxacin(DB01208)|Teniposide(DB00444)|Trovafloxacin(DB00685)|Valrubicin(DB00385)	GGTTAAATACCAAAGGGGCAT	0.378													9	151					0.000442599	0.00445669	0.000442599	1	0
KRT25	147183	broad.mit.edu	37	17	38910645	38910645	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:38910645T>C	uc002hve.2	-	2	566	c.505A>G	c.(505-507)AGA>GGA	p.R169G		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	169	Rod.|Coil 1B.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				TACTTGAGTCTGAAATCATCA	0.378													4	150					0	0	0.000157383	0	0
KRT12	3859	broad.mit.edu	37	17	39021187	39021187	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:39021187C>G	uc002hvk.2	-	3	702	c.678G>C	c.(676-678)CAG>CAC	p.Q226H		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	226	Rod.|Coil 1B.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				CCTCTACGCCCTGGCGCAGGG	0.567													4	71					0	0	3.59834e-05	0	0
KRT39	390792	broad.mit.edu	37	17	39119953	39119953	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:39119953C>G	uc002hvo.1	-	3	670	c.634G>C	c.(634-636)GGC>CGC	p.G212R	KRT39_uc010wfm.1_5'UTR	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	212	Rod.|Coil 1B.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				TCGGCCTTGCCCAGGGTCAGC	0.502													5	120					0	0	0.000602214	0	0
KRT31	3881	broad.mit.edu	37	17	39551199	39551199	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:39551199T>C	uc002hwn.2	-	6	1051	c.998A>G	c.(997-999)GAG>GGG	p.E333G	KRT31_uc010cxn.2_Missense_Mutation_p.E333G	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	333	Coil 2.|Rod.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				GTTCTGCCGCTCCAGGTCACT	0.627													3	102					0	0	6.4e-05	0	0
KRT38	8687	broad.mit.edu	37	17	39595066	39595066	+	Silent	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:39595066A>G	uc002hwq.1	-	4	1200	c.777T>C	c.(775-777)ATT>ATC	p.I259I		NM_006771	NP_006762	O76015	KRT38_HUMAN	keratin 38	259	Linker 12.|Rod.					intermediate filament	structural molecule activity			skin(2)	2		Breast(137;0.000496)				TGTCCAGCTCAATCCGGAGCT	0.567													5	120					0	0	0.000274275	0	0
KRT9	3857	broad.mit.edu	37	17	39724873	39724873	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:39724873C>G	uc002hxe.3	-	5	1123	c.1057G>C	c.(1057-1059)GAG>CAG	p.E353Q	JUP_uc010wfs.1_Intron	NM_000226	NP_000217	P35527	K1C9_HUMAN	keratin 9	353	Rod.|Coil 2.				intermediate filament organization|skin development		protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Breast(137;0.000307)				ACCTCATGCTCGATCTGGGTT	0.552													4	255					0	0	0.000157383	0	0
HAP1	9001	broad.mit.edu	37	17	39880997	39880997	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:39880997G>A	uc002hxm.1	-	12	1984	c.1972C>T	c.(1972-1974)CTC>TTC	p.L658F	JUP_uc010wfs.1_Intron|HAP1_uc002hxn.1_Missense_Mutation_p.L606F|HAP1_uc002hxo.1_Missense_Mutation_p.L589F|HAP1_uc002hxp.1_Missense_Mutation_p.L581F	NM_177977	NP_817084	P54257	HAP1_HUMAN	huntingtin-associated protein 1 isoform 2	658					brain development|protein localization|synaptic transmission	actin cytoskeleton	protein binding			ovary(2)	2		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.0677)			GCGGCAGGGAGGGCCCCGTGG	0.617													5	159					0	0	8.12818e-05	0	0
ACLY	47	broad.mit.edu	37	17	40070057	40070057	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:40070057C>A	uc002hyg.2	-	2	233	c.70G>T	c.(70-72)GCC>TCC	p.A24S	ACLY_uc002hyh.2_Missense_Mutation_p.A24S|ACLY_uc002hyi.2_Missense_Mutation_p.A78S|ACLY_uc010wfx.1_Missense_Mutation_p.A78S|ACLY_uc010wfy.1_Missense_Mutation_p.A24S	NM_001096	NP_001087	P53396	ACLY_HUMAN	ATP citrate lyase isoform 1	24					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			ovary(2)|central_nervous_system(1)	3		Breast(137;0.000143)				TTCTGGATGGCTGAGGTGGTA	0.577													6	136					8.12818e-05	0.000938396	8.12818e-05	1	0
STAT3	6774	broad.mit.edu	37	17	40474513	40474513	+	Splice_Site	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:40474513C>G	uc002hzl.1	-	21	2129	c.1889_splice	c.e21-1	p.G630_splice	STAT3_uc002hzk.1_Splice_Site_p.G630_splice|STAT3_uc002hzm.1_Splice_Site_p.G630_splice|STAT3_uc010wgh.1_Splice_Site_p.G532_splice|STAT3_uc002hzn.1_Splice_Site_p.G630_splice	NM_139276	NP_644805	P40763	STAT3_HUMAN	signal transducer and activator of transcription						cellular component movement|eating behavior|eye photoreceptor cell differentiation|glucose homeostasis|interleukin-6-mediated signaling pathway|interspecies interaction between organisms|JAK-STAT cascade involved in growth hormone signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein import into nucleus|response to estradiol stimulus|sexual reproduction|temperature homeostasis	cytosol|nucleus|plasma membrane	calcium ion binding|ligand-regulated transcription factor activity|protein dimerization activity|protein kinase binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)|lung(1)|breast(1)|central_nervous_system(1)	4		all_cancers(22;1.39e-06)|all_epithelial(22;2.95e-05)|Breast(137;0.000135)		BRCA - Breast invasive adenocarcinoma(366;0.139)		TGGGTCTTACCTGTCACAGGA	0.448									Hyperimmunoglobulin_E_Recurrent_Infection_Syndrome				4	149					0	0	0.00024832	0	0
STAT3	6774	broad.mit.edu	37	17	40481467	40481467	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:40481467C>A	uc002hzl.1	-	14	1482	c.1242G>T	c.(1240-1242)AGG>AGT	p.R414S	STAT3_uc002hzk.1_Missense_Mutation_p.R414S|STAT3_uc002hzm.1_Missense_Mutation_p.R414S|STAT3_uc010wgh.1_Missense_Mutation_p.R316S|STAT3_uc002hzn.1_Missense_Mutation_p.R414S	NM_139276	NP_644805	P40763	STAT3_HUMAN	signal transducer and activator of transcription	414					cellular component movement|eating behavior|eye photoreceptor cell differentiation|glucose homeostasis|interleukin-6-mediated signaling pathway|interspecies interaction between organisms|JAK-STAT cascade involved in growth hormone signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein import into nucleus|response to estradiol stimulus|sexual reproduction|temperature homeostasis	cytosol|nucleus|plasma membrane	calcium ion binding|ligand-regulated transcription factor activity|protein dimerization activity|protein kinase binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)|lung(1)|breast(1)|central_nervous_system(1)	4		all_cancers(22;1.39e-06)|all_epithelial(22;2.95e-05)|Breast(137;0.000135)		BRCA - Breast invasive adenocarcinoma(366;0.139)		ATCTCTGCTCCCTCAGGGTCT	0.547									Hyperimmunoglobulin_E_Recurrent_Infection_Syndrome				8	215					2.80697e-09	3.71907e-08	0.000978159	1	0
AOC2	314	broad.mit.edu	37	17	40996859	40996859	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:40996859C>G	uc002ibu.2	+	1	251	c.216C>G	c.(214-216)ACC>ACG	p.T72T	AOC2_uc002ibt.2_Silent_p.T72T	NM_009590	NP_033720	O75106	AOC2_HUMAN	amine oxidase, copper containing 2 isoform b	72					catecholamine metabolic process|visual perception	cytoplasm|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|electron carrier activity|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			ovary(2)	2		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)		GCTTTCTGACCCAGCGGCTGG	0.657													4	219					0	0	3.59834e-05	0	0
AOC2	314	broad.mit.edu	37	17	41001306	41001306	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:41001306G>C	uc002ibu.2	+	2	1827	c.1792G>C	c.(1792-1794)GGG>CGG	p.G598R	AOC2_uc002ibt.2_Missense_Mutation_p.G598R|AOC3_uc002ibv.2_5'Flank	NM_009590	NP_033720	O75106	AOC2_HUMAN	amine oxidase, copper containing 2 isoform b	598					catecholamine metabolic process|visual perception	cytoplasm|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|electron carrier activity|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			ovary(2)	2		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)		TCACCAGCGCGGGTACCGAAT	0.622													4	104					0	0	3.59834e-05	0	0
TMEM106A	113277	broad.mit.edu	37	17	41365169	41365169	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:41365169G>C	uc002idn.1	+	3	346	c.109G>C	c.(109-111)GGT>CGT	p.G37R	TMEM106A_uc010why.1_Intron|TMEM106A_uc010cze.1_Missense_Mutation_p.G37R|TMEM106A_uc010whz.1_Missense_Mutation_p.G37R	NM_145041	NP_659478	Q96A25	T106A_HUMAN	transmembrane protein 106A	37						integral to membrane					0		Breast(137;0.0164)		BRCA - Breast invasive adenocarcinoma(366;0.0917)		CTCCAGCACCGGTAGCAGCAA	0.552													5	130					0	0	8.12818e-05	0	0
DHX8	1659	broad.mit.edu	37	17	41585853	41585853	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:41585853C>G	uc002idu.1	+	16	2540	c.2467C>G	c.(2467-2469)CGA>GGA	p.R823G	DHX8_uc010wif.1_Missense_Mutation_p.R732G|DHX8_uc010wig.1_Missense_Mutation_p.R823G	NM_004941	NP_004932	Q14562	DHX8_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 8	823	Helicase C-terminal.					catalytic step 2 spliceosome	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|pancreas(1)	4		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.08)		GATGCAGACCCGAATCTTTGA	0.488													4	81					0	0	3.59834e-05	0	0
DHX8	1659	broad.mit.edu	37	17	41590868	41590868	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:41590868C>A	uc002idu.1	+	17	2714	c.2641C>A	c.(2641-2643)CAG>AAG	p.Q881K	DHX8_uc010wif.1_Missense_Mutation_p.Q790K|DHX8_uc010wig.1_Missense_Mutation_p.Q881K	NM_004941	NP_004932	Q14562	DHX8_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 8	881	Helicase C-terminal.					catalytic step 2 spliceosome	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|pancreas(1)	4		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.08)		GCCTATTTCTCAGGTATGACG	0.388													6	99					0.000442599	0.00445669	0.000442599	1	0
EFTUD2	9343	broad.mit.edu	37	17	42953387	42953387	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:42953387G>C	uc002ihn.2	-	10	1045	c.784C>G	c.(784-786)CGG>GGG	p.R262G	EFTUD2_uc010wje.1_Missense_Mutation_p.R227G|EFTUD2_uc010wjf.1_Missense_Mutation_p.R252G	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	262						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				AGGATCAGCCGGTCAATCTTG	0.507													4	155					0	0	3.59834e-05	0	0
WNT9B	7484	broad.mit.edu	37	17	44953712	44953712	+	Silent	SNP	G	C	C	rs145939422	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:44953712G>C	uc002ikw.1	+	4	739	c.702G>C	c.(700-702)ACG>ACC	p.T234T	WNT9B_uc002ikx.1_Silent_p.T234T	NM_003396	NP_003387	O14905	WNT9B_HUMAN	wingless-type MMTV integration site family,	234					anterior/posterior pattern formation|axis specification|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|collecting duct development|cornea development in camera-type eye|endoderm development|establishment of planar polarity involved in nephron morphogenesis|kidney rudiment formation|male genitalia development|mesonephric duct formation|metanephric tubule development|neuron differentiation|palate development|regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|uterus morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway|Wnt receptor signaling pathway, planar cell polarity pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding			lung(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.0257)			TCCGTGAGACGGGCCAGGTGC	0.637													3	51					0	0	0.00024832	0	0
CDK5RAP3	80279	broad.mit.edu	37	17	46051328	46051328	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:46051328G>C	uc002imr.2	+	4	300	c.216G>C	c.(214-216)CTG>CTC	p.L72L	CDK5RAP3_uc010wlc.1_Silent_p.L92L|CDK5RAP3_uc002imq.1_5'UTR|CDK5RAP3_uc002imu.2_5'UTR|CDK5RAP3_uc002ims.2_5'UTR|CDK5RAP3_uc002imv.2_5'UTR|CDK5RAP3_uc002imw.2_5'UTR|CDK5RAP3_uc002imx.2_5'UTR	NM_176096	NP_788276	Q96JB5	CK5P3_HUMAN	CDK5 regulatory subunit associated protein 3	72					brain development|regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation		neuronal Cdc2-like kinase binding				0						TAAGAATCCTGGACCTTCTCA	0.493													4	181					0	0	0.000157383	0	0
HOXB5	3215	broad.mit.edu	37	17	46669648	46669648	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:46669648G>C	uc002inr.2	-	2	792	c.733C>G	c.(733-735)CGG>GGG	p.R245G	HOXB3_uc010wlm.1_5'Flank|HOXB3_uc010dbf.2_5'Flank|HOXB3_uc010dbg.2_5'Flank	NM_002147	NP_002138	P09067	HXB5_HUMAN	homeobox B5	245	Homeobox.					nucleus	sequence-specific DNA binding				0						TTCATGCGCCGGTTCTGGAAC	0.612													4	160					0	0	0.000157383	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47247027	47247027	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:47247027C>T	uc002ion.2	+	11	1697	c.1638C>T	c.(1636-1638)CTC>CTT	p.L546L	B4GALNT2_uc010wlt.1_Silent_p.L460L|B4GALNT2_uc010wlu.1_Silent_p.L486L	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	546	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			CCAACACCCTCACCCGGGTCC	0.542													10	47					0	0	0.000442599	0	0
NXPH3	11248	broad.mit.edu	37	17	47656118	47656118	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:47656118C>T	uc002ipa.2	+	2	499	c.215C>T	c.(214-216)CCT>CTT	p.P72L	NXPH3_uc010wlw.1_Missense_Mutation_p.P72L	NM_007225	NP_009156	O95157	NXPH3_HUMAN	neurexophilin 3 precursor	72	II.				neuropeptide signaling pathway	extracellular region				pancreas(1)|skin(1)	2	all_cancers(4;7.45e-14)|Breast(4;1.08e-27)|all_epithelial(4;2.27e-17)					CTGGCCCCGCCTGGGGAGGCT	0.682													6	73					0	0	3.59834e-05	0	0
SPATA20	64847	broad.mit.edu	37	17	48627929	48627929	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:48627929C>A	uc002irf.2	+	9	1224	c.1083C>A	c.(1081-1083)GCC>GCA	p.A361A	SPATA20_uc002irc.2_Silent_p.A28A|SPATA20_uc002ire.2_Silent_p.A317A|SPATA20_uc002ird.2_Silent_p.A377A|SPATA20_uc010wmv.1_Missense_Mutation_p.P418Q|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	361					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			CTGACGTGGCCAAAGGCATCC	0.602											OREG0024568	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	222					7.48243e-07	9.56199e-06	0.000442599	1	0
SPAG9	9043	broad.mit.edu	37	17	49098543	49098543	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:49098543G>C	uc002itc.2	-	7	1176	c.967C>G	c.(967-969)CAG>GAG	p.Q323E	SPAG9_uc002itb.2_Missense_Mutation_p.Q309E|SPAG9_uc002itd.2_Missense_Mutation_p.Q309E|SPAG9_uc002itf.2_Missense_Mutation_p.Q144E|SPAG9_uc002ita.2_Missense_Mutation_p.Q166E|SPAG9_uc002ite.2_Missense_Mutation_p.Q153E	NM_001130528	NP_001124000	O60271	JIP4_HUMAN	sperm associated antigen 9 isoform 1	323					positive regulation of cell migration|positive regulation of muscle cell differentiation|retrograde transport, endosome to Golgi|spermatogenesis	acrosomal vesicle|integral to membrane|perinuclear region of cytoplasm				lung(4)|breast(1)	5			BRCA - Breast invasive adenocarcinoma(22;4.24e-07)			CTAGTTTCCTGGGCTACCTGT	0.378													4	208					0	0	0.00024832	0	0
SCPEP1	59342	broad.mit.edu	37	17	55075781	55075781	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:55075781C>A	uc002iuv.3	+	10	969	c.916C>A	c.(916-918)CGA>AGA	p.R306R	SCPEP1_uc010dcl.2_RNA|SCPEP1_uc010wnk.1_Silent_p.R256R	NM_021626	NP_067639	Q9HB40	RISC_HUMAN	serine carboxypeptidase 1 precursor	306					proteolysis	extracellular region	serine-type carboxypeptidase activity			skin(1)	1	Breast(9;2.86e-08)					ACACCTACAACGAGATGCCTT	0.438													6	120					0.000157383	0.00173811	0.000157383	1	0
AKAP1	8165	broad.mit.edu	37	17	55194237	55194237	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:55194237C>A	uc002iux.2	+	8	2680	c.2449C>A	c.(2449-2451)CTG>ATG	p.L817M	AKAP1_uc010wnl.1_Missense_Mutation_p.L817M|AKAP1_uc010dcm.2_Missense_Mutation_p.L817M	NM_003488	NP_003479	Q92667	AKAP1_HUMAN	A-kinase anchor protein 1 precursor	817	Tudor.				blood coagulation	cytosol|integral to membrane|mitochondrial outer membrane	protein binding|RNA binding			ovary(1)	1	Breast(9;5.46e-08)					CTTTGTCACCCTGCCGTTTCA	0.507													8	189					0.000442599	0.00445669	0.000442599	1	0
VEZF1	7716	broad.mit.edu	37	17	56058015	56058015	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:56058015C>G	uc002ivf.1	-	4	1068	c.925G>C	c.(925-927)GGG>CGG	p.G309R	VEZF1_uc010dcn.1_Missense_Mutation_p.G159R	NM_007146	NP_009077	Q14119	VEZF1_HUMAN	zinc finger protein 161	309					cellular defense response|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						TGGCTCTGCCCATGAGTCTTT	0.433													4	102					0	0	3.59834e-05	0	0
LPO	4025	broad.mit.edu	37	17	56326425	56326425	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:56326425C>G	uc002ivt.2	+	5	646	c.330C>G	c.(328-330)CCC>CCG	p.P110P	LPO_uc010dco.2_Silent_p.P110P|LPO_uc010wnr.1_Silent_p.P27P|LPO_uc010wns.1_Silent_p.P51P|LPO_uc010dcp.2_Silent_p.P27P|LPO_uc010dcq.2_5'UTR	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	110					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						TTTCAGATCCCAGCCTGGACT	0.582													4	122					0	0	3.59834e-05	0	0
LPO	4025	broad.mit.edu	37	17	56342160	56342160	+	Nonsense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:56342160C>G	uc002ivt.2	+	10	1660	c.1344C>G	c.(1342-1344)TAC>TAG	p.Y448*	LPO_uc010wns.1_Nonsense_Mutation_p.Y389*|LPO_uc010dcp.2_Nonsense_Mutation_p.Y365*|LPO_uc010dcq.2_Nonsense_Mutation_p.Y119*|LPO_uc010dcr.2_Nonsense_Mutation_p.Y11*	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	448					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						ATCAAGGCTACAGTGAATCTG	0.473													4	75					0	0	0.00024832	0	0
BZRAP1	9256	broad.mit.edu	37	17	56388969	56388969	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:56388969C>G	uc002ivx.3	-	18	3915	c.3044G>C	c.(3043-3045)CGG>CCG	p.R1015P	BZRAP1_uc010dcs.2_Missense_Mutation_p.R955P|BZRAP1_uc010wnt.1_Missense_Mutation_p.R1015P	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1015	Fibronectin type-III 3.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GCCTGTGACCCGGACACCGTT	0.597													4	59					0	0	0.000157383	0	0
HSF5	124535	broad.mit.edu	37	17	56565248	56565248	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:56565248G>A	uc002iwi.1	-	1	512	c.388C>T	c.(388-390)CTC>TTC	p.L130F		NM_001080439	NP_001073908	Q4G112	HSF5_HUMAN	heat shock transcription factor family member 5	130	By similarity.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GCGCTGGTGAGGCGCTTGAGG	0.721													4	45					0	0	0.00024832	0	0
MTMR4	9110	broad.mit.edu	37	17	56573670	56573670	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:56573670C>G	uc002iwj.2	-	16	1943	c.1833G>C	c.(1831-1833)ATG>ATC	p.M611I		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	611						cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GAAGATCATCCATGGATCTGG	0.473													3	59					0	0	6.4e-05	0	0
TEX14	56155	broad.mit.edu	37	17	56650588	56650588	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:56650588G>T	uc010dcz.1	-	24	3721	c.3603C>A	c.(3601-3603)CCC>CCA	p.P1201P	TEX14_uc002iwr.1_Silent_p.P1195P|TEX14_uc002iws.1_Silent_p.P1155P|TEX14_uc010dda.1_Silent_p.P935P	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	1201						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GGTTTATTTTGGGTGTTTTGC	0.453													8	201					4.68919e-08	6.14536e-07	0.000673444	1	0
PPM1E	22843	broad.mit.edu	37	17	57058075	57058075	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:57058075G>C	uc002iwx.2	+	7	2078	c.1951G>C	c.(1951-1953)GGG>CGG	p.G651R	PPM1E_uc010ddd.2_Missense_Mutation_p.G414R	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	660					protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			TGTCTGTTCAGGGTTGGAAAA	0.458													4	174					0	0	3.59834e-05	0	0
PTRH2	51651	broad.mit.edu	37	17	57775025	57775025	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:57775025G>T	uc002ixt.2	-	2	440	c.315C>A	c.(313-315)CTC>CTA	p.L105L	PTRH2_uc002ixs.2_RNA	NM_016077	NP_057161	Q9Y3E5	PTH2_HUMAN	Bcl-2 inhibitor of transcription precursor	105					apoptosis|translation	mitochondrion	aminoacyl-tRNA hydrolase activity				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					CCCATTGTTTGAGCATTTCAG	0.463													8	164					0.000442599	0.00445669	0.000442599	1	0
RNFT1	51136	broad.mit.edu	37	17	58030417	58030417	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:58030417G>C	uc002iya.2	-	9	1322	c.1229C>G	c.(1228-1230)CCA>CGA	p.P410R	RNFT1_uc002iyb.2_RNA|RNFT1_uc002iyc.2_Missense_Mutation_p.P148R	NM_016125	NP_057209	Q5M7Z0	RNFT1_HUMAN	PTD016 protein	410	RING-type.					integral to membrane	zinc ion binding				0	all_cancers(5;1.58e-13)|Breast(5;2.91e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;7.95e-12)|all cancers(12;1.34e-10)			TCTGCAGAGTGGACATGTTTT	0.328													4	126					0	0	3.59834e-05	0	0
USP32	84669	broad.mit.edu	37	17	58348745	58348745	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:58348745C>A	uc002iyo.1	-	6	955	c.669G>T	c.(667-669)TTG>TTT	p.L223F	USP32_uc010wov.1_Missense_Mutation_p.L223F	NM_032582	NP_115971	Q8NFA0	UBP32_HUMAN	ubiquitin specific protease 32	223					protein deubiquitination|ubiquitin-dependent protein catabolic process	Golgi apparatus|membrane	calcium ion binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|breast(2)|large_intestine(1)	5	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;2.02e-11)|all cancers(12;5.23e-10)|Colorectal(3;0.198)			GTGGTGAAACCAATGGGCCAA	0.413													6	86					0.000442599	0.00445669	0.000442599	1	0
MARCH10	162333	broad.mit.edu	37	17	60802363	60802363	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:60802363C>G	uc010ddr.2	-	7	2278	c.2040G>C	c.(2038-2040)GTG>GTC	p.V680V	MARCH10_uc002jag.3_Silent_p.V680V|MARCH10_uc010dds.2_Silent_p.V718V|MARCH10_uc002jah.2_Silent_p.V679V|uc002jaj.1_Intron|uc002jak.2_Intron	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	680	RING-CH-type.						ligase activity|zinc ion binding				0						GCAGGCTTCCCACACAGCCGC	0.557													5	132					0	0	8.12818e-05	0	0
TANC2	26115	broad.mit.edu	37	17	61457105	61457105	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:61457105G>C	uc002jal.3	+	13	2410	c.2387G>C	c.(2386-2388)TGG>TCG	p.W796S	TANC2_uc010wpe.1_Missense_Mutation_p.W706S|TANC2_uc002jam.1_Missense_Mutation_p.W163S	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	796							binding			ovary(2)	2						CTTGCCTTCTGGTTTTCCCGC	0.308													4	98					0	0	0.000157383	0	0
ACE	1636	broad.mit.edu	37	17	61561238	61561238	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:61561238C>G	uc002jau.1	+	11	1637	c.1615C>G	c.(1615-1617)CAG>GAG	p.Q539E	ACE_uc010ddu.1_Missense_Mutation_p.Q356E|ACE_uc002jav.1_5'Flank|ACE_uc010ddv.1_5'Flank|ACE_uc010wpj.1_5'Flank|ACE_uc002jaw.1_5'Flank|ACE_uc010wpk.1_5'Flank	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	539	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	CCTGCAGTTCCAGTTCCATGA	0.592													4	90					0	0	0.00024832	0	0
GH1	2688	broad.mit.edu	37	17	61995408	61995408	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:61995408G>C	uc002jdj.2	-	3	322	c.260C>G	c.(259-261)CCC>CGC	p.P87R	GH1_uc002jdi.2_Missense_Mutation_p.P72R|GH1_uc002jdk.2_Intron|GH1_uc002jdl.2_Intron|GH1_uc002jdm.2_Intron|GH1_uc002jdn.2_Missense_Mutation_p.P87R	NM_000515	NP_000506	P01241	SOMA_HUMAN	growth hormone 1 isoform 1	87					glucose transport|growth hormone receptor signaling pathway|JAK-STAT cascade|positive regulation of activation of JAK2 kinase activity|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of MAP kinase activity|positive regulation of multicellular organism growth|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|response to estradiol stimulus	extracellular space	growth factor activity|growth hormone receptor binding|hormone activity|metal ion binding|prolactin receptor binding				0						CCTGTTGGAGGGTGTCGGAAT	0.552													4	154					0	0	0.00024832	0	0
BPTF	2186	broad.mit.edu	37	17	65871115	65871115	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:65871115C>G	uc002jgf.2	+	4	1904	c.1843C>G	c.(1843-1845)CCT>GCT	p.P615A	BPTF_uc002jge.2_Missense_Mutation_p.P615A|BPTF_uc010wqm.1_Missense_Mutation_p.P615A	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	730	Interaction with KEAP1.				brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			AGATGATGACCCTGAGCAAGG	0.333													4	175					0	0	0.00024832	0	0
BPTF	2186	broad.mit.edu	37	17	65978376	65978376	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:65978376A>G	uc002jgf.2	+	28	8796	c.8735A>G	c.(8734-8736)AAC>AGC	p.N2912S	BPTF_uc002jge.2_Missense_Mutation_p.N2895S|BPTF_uc002jgg.2_Missense_Mutation_p.N627S	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	3038					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			AGGTCTCATAACAACAAACTG	0.378													3	103					0	0	6.4e-05	0	0
ARSG	22901	broad.mit.edu	37	17	66381205	66381205	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:66381205G>C	uc002jhc.2	+	9	1779	c.983G>C	c.(982-984)GGG>GCG	p.G328A	ARSG_uc002jhb.1_Missense_Mutation_p.G164A	NM_014960	NP_055775	Q96EG1	ARSG_HUMAN	Arylsulfatase G precursor	328					sulfur compound metabolic process	endoplasmic reticulum|extracellular space|lysosome	arylsulfatase activity|metal ion binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;5.34e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			CCTCTCACAGGGGGAAGTCCA	0.572													4	69					0	0	0.00024832	0	0
ABCA8	10351	broad.mit.edu	37	17	66929361	66929361	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:66929361C>A	uc002jhp.2	-	5	697	c.518G>T	c.(517-519)TGG>TTG	p.W173L	ABCA8_uc002jhq.2_Missense_Mutation_p.W173L|ABCA8_uc010wqq.1_Missense_Mutation_p.W173L|ABCA8_uc010wqr.1_Missense_Mutation_p.W112L|ABCA8_uc002jhr.2_Missense_Mutation_p.W173L|ABCA8_uc002jhs.2_Missense_Mutation_p.W173L|ABCA8_uc002jht.2_Missense_Mutation_p.W173L	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	173						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					ACCTTCCTTCCAAAATACTGA	0.303													17	337					0.000958276	0.00917326	0.000958276	1	0
ABCA9	10350	broad.mit.edu	37	17	66981227	66981227	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:66981227G>C	uc002jhu.2	-	33	4394	c.4251C>G	c.(4249-4251)CCC>CCG	p.P1417P	ABCA9_uc010dez.2_Silent_p.P1379P	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	1417	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					AGGTCTTCACGGGAGCCTTCA	0.532													4	82					0	0	0.00024832	0	0
ABCA5	23461	broad.mit.edu	37	17	67266772	67266773	+	Missense_Mutation	DNP	CC	AA	AA	rs141491858		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:67266772_67266773CC>AA	uc002jif.2	-	21	4229_4230	c.3011_3012GG>TT	c.(3010-3012)TGG>TTT	p.W1004F	ABCA5_uc002jib.2_5'Flank|ABCA5_uc002jic.2_Missense_Mutation_p.W227F|ABCA5_uc002jid.2_5'UTR|ABCA5_uc002jie.2_RNA|ABCA5_uc002jig.2_Missense_Mutation_p.W1004F	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	1004					cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					ATGGGGTACTCCAGATCTGGAT	0.277													11	301					0	0	6.4e-05	0	0
MAP2K6	5608	broad.mit.edu	37	17	67537862	67537862	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:67537862G>C	uc002jij.2	+	12	1261	c.973G>C	c.(973-975)GCA>CCA	p.A325P		NM_002758	NP_002749	P52564	MP2K6_HUMAN	mitogen-activated protein kinase kinase 6	325					activation of MAPK activity|cell cycle arrest|DNA damage induced protein phosphorylation|innate immune response|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of muscle cell differentiation|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|pancreas(1)	5	Breast(10;6.05e-10)					AACAGATGTGGCATCTTTTGT	0.378													3	95					0	0	6.4e-05	0	0
SDK2	54549	broad.mit.edu	37	17	71387647	71387647	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:71387647G>C	uc010dfm.2	-	28	3929	c.3929C>G	c.(3928-3930)CCA>CGA	p.P1310R	SDK2_uc002jjt.3_Missense_Mutation_p.P469R|SDK2_uc010dfn.2_Missense_Mutation_p.P989R	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1310	Fibronectin type-III 8.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						CCGCACCTCTGGGAACAGGAT	0.672													4	21					0	0	3.59834e-05	0	0
CD300C	10871	broad.mit.edu	37	17	72541037	72541037	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:72541037T>C	uc002jky.1	-	2	472	c.111A>G	c.(109-111)GGA>GGG	p.G37G		NM_006678	NP_006669	Q08708	CLM6_HUMAN	CD300C antigen precursor	37	Extracellular (Potential).|Ig-like V-type.				cellular defense response	integral to plasma membrane	transmembrane receptor activity				0						CACTCAGGGATCCCCCCACGG	0.542													11	41					0	0	0.000692331	0	0
NUP85	79902	broad.mit.edu	37	17	73208138	73208138	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:73208138G>C	uc002jng.1	+	4	602	c.342G>C	c.(340-342)GAG>GAC	p.E114D	NUP85_uc010dgd.1_Missense_Mutation_p.E114D|NUP85_uc010wrv.1_Missense_Mutation_p.E68D	NM_024844	NP_079120	Q9BW27	NUP85_HUMAN	nucleoporin 85	114					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|nuclear membrane|Nup107-160 complex|spindle	protein binding			ovary(1)	1	all_lung(278;0.14)|Lung NSC(278;0.168)		all cancers(21;3.45e-06)			CATGTATGGAGGAAATGCACC	0.229													4	42					0	0	0.00024832	0	0
SLC25A19	60386	broad.mit.edu	37	17	73274308	73274308	+	Missense_Mutation	SNP	C	G	G	rs140556110		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:73274308C>G	uc002jns.3	-	4	1478	c.568G>C	c.(568-570)GGG>CGG	p.G190R	SLC25A19_uc010dge.2_Missense_Mutation_p.G133R|SLC25A19_uc002jnv.3_Missense_Mutation_p.G190R|SLC25A19_uc002jnu.3_Missense_Mutation_p.G190R|SLC25A19_uc002jnw.3_Missense_Mutation_p.G190R|SLC25A19_uc002jnt.3_Missense_Mutation_p.G190R	NM_021734	NP_068380	Q9HC21	TPC_HUMAN	solute carrier family 25, member 19	190	Solcar 2.|Helical; Name=4; (Potential).					integral to membrane|mitochondrial inner membrane	binding|deoxynucleotide transmembrane transporter activity			ovary(1)	1	all_cancers(13;5.98e-08)|all_epithelial(9;1.16e-08)|Breast(9;3.1e-08)		all cancers(21;6.82e-07)|Epithelial(20;6.86e-06)			AACTGCAGCCCGGCGTAGGGG	0.582													5	140					0	0	0.000442599	0	0
FBF1	85302	broad.mit.edu	37	17	73915951	73915951	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:73915951G>A	uc002jqc.2	-	19	2165	c.1891C>T	c.(1891-1893)CGC>TGC	p.R631C	FBF1_uc002jqa.1_RNA|FBF1_uc010wsp.1_Missense_Mutation_p.R622C|FBF1_uc002jqd.1_Missense_Mutation_p.R632C|FBF1_uc002jqb.2_RNA|FBF1_uc010dgr.1_5'UTR	NM_001080542	NP_001074011	Q8TES7	FBF1_HUMAN	Fas (TNFRSF6) binding factor 1	631											0						ACCTTGATGCGGCTTCTGCCA	0.612													4	63					0	0	0.000157383	0	0
ACOX1	51	broad.mit.edu	37	17	73951755	73951755	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:73951755G>C	uc002jqf.2	-	6	956	c.666C>G	c.(664-666)ACC>ACG	p.T222T	ACOX1_uc010wsq.1_Silent_p.T184T|ACOX1_uc002jqe.2_Silent_p.T222T|ACOX1_uc010wsr.1_Silent_p.T154T	NM_007292	NP_009223	Q15067	ACOX1_HUMAN	acyl-Coenzyme A oxidase 1 isoform b	222					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|prostaglandin metabolic process|very long-chain fatty acid metabolic process	peroxisomal matrix	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity|flavin adenine dinucleotide binding|protein N-terminus binding			ovary(1)	1						TGTCACCAACGGTAATTCCTA	0.443													4	72					0	0	3.59834e-05	0	0
EVPL	2125	broad.mit.edu	37	17	74003754	74003754	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:74003754G>C	uc002jqi.2	-	22	5760	c.5532C>G	c.(5530-5532)GCC>GCG	p.A1844A	EVPL_uc010wss.1_Silent_p.A1866A|EVPL_uc010wst.1_Silent_p.A1314A	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1844	Globular 2.|Plectin 3.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TCTTGGCCACGGCCGTCTTGA	0.602													4	139					0	0	0.00024832	0	0
EVPL	2125	broad.mit.edu	37	17	74013933	74013933	+	Missense_Mutation	SNP	G	C	C	rs142143003		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:74013933G>C	uc002jqi.2	-	14	1825	c.1597C>G	c.(1597-1599)CGG>GGG	p.R533G	EVPL_uc010wss.1_Missense_Mutation_p.R555G|EVPL_uc010wst.1_Missense_Mutation_p.R3G	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	533	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CCATCCAGCCGGGTCATCTGT	0.677													4	89					0	0	0.000157383	0	0
EXOC7	23265	broad.mit.edu	37	17	74090658	74090658	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:74090658G>A	uc002jqs.2	-	6	740	c.645C>T	c.(643-645)TTC>TTT	p.F215F	EXOC7_uc010dgv.1_Silent_p.F162F|EXOC7_uc002jqq.2_Silent_p.F215F|EXOC7_uc010wsw.1_Silent_p.F215F|EXOC7_uc010wsx.1_Silent_p.F215F|EXOC7_uc002jqr.2_Silent_p.F215F|EXOC7_uc010wsv.1_Silent_p.F174F|EXOC7_uc002jqu.2_Silent_p.F215F	NM_001145297	NP_001138769	Q9UPT5	EXOC7_HUMAN	exocyst complex component 7 isoform 4	215					exocytosis|protein transport	centriolar satellite|cytosol|exocyst|plasma membrane	protein binding				0			LUSC - Lung squamous cell carcinoma(166;0.187)			AGACGTTCATGAAATCTGAGG	0.532													9	84					0	0	0.000673444	0	0
MGAT5B	146664	broad.mit.edu	37	17	74928824	74928824	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:74928824C>A	uc002jti.2	+	10	1525	c.1422C>A	c.(1420-1422)GCC>GCA	p.A474A	MGAT5B_uc002jth.2_Silent_p.A463A	NM_198955	NP_945193	Q3V5L5	MGT5B_HUMAN	N-acetylglucosaminyltranferase VB isoform 2	463	Lumenal (Potential).					Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(2)|skin(1)	3						GCAACATGGCCGTGGTGTACG	0.667													5	65					0.000157383	0.00173811	0.000157383	1	0
SGSH	6448	broad.mit.edu	37	17	78184800	78184800	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:78184800G>A	uc002jxz.3	-	8	1047	c.960C>T	c.(958-960)CCC>CCT	p.P320P	SGSH_uc002jya.3_Silent_p.P117P|SGSH_uc002jxy.2_3'UTR	NM_000199	NP_000190	P51688	SPHM_HUMAN	N-sulfoglucosamine sulfohydrolase precursor	320					proteoglycan metabolic process	lysosome	metal ion binding|N-sulfoglucosamine sulfohydrolase activity|sulfuric ester hydrolase activity			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			CCAAGATGGTGGGCGTGAGGT	0.652													4	43					0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	17	78247137	78247137	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:78247137G>C	uc002jye.1	+	3	338	c.195G>C	c.(193-195)CCG>CCC	p.P65P	uc002jyf.2_Silent_p.P65P					Homo sapiens mRNA for KIAA1618 protein, partial cds.																		GCTTGTTCCCGGGCTCAGACA	0.612													3	52					0	0	6.4e-05	0	0
RPTOR	57521	broad.mit.edu	37	17	78704470	78704470	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:78704470C>A	uc002jyt.1	+	5	1423	c.618C>A	c.(616-618)TTC>TTA	p.F206L	RPTOR_uc002jys.2_Missense_Mutation_p.F206L|RPTOR_uc010wuf.1_Missense_Mutation_p.F21L|RPTOR_uc010wug.1_Missense_Mutation_p.F206L	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	206					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						TCAAGTCCTTCAAGCAGTTCG	0.567													8	102					6.40141e-05	0.00075092	0.000978159	1	0
C17orf70	80233	broad.mit.edu	37	17	79517359	79517359	+	Silent	SNP	C	G	G	rs112195664		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:79517359C>G	uc002kaq.2	-	3	1216	c.1161G>C	c.(1159-1161)CCG>CCC	p.P387P	C17orf70_uc002kao.1_5'Flank|C17orf70_uc010wuq.1_RNA|C17orf70_uc002kap.2_Silent_p.P236P	NM_001109760	NP_001103230	Q0VG06	FP100_HUMAN	Fanconi anemia core complex 100 kDa subunit	387					DNA repair	cytoplasm|intermediate filament cytoskeleton|nucleoplasm	DNA binding			ovary(1)|skin(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0371)			GCAGGCCTCCCGGGCCTTCTT	0.662													4	88					0	0	0.00024832	0	0
DUS1L	64118	broad.mit.edu	37	17	80022817	80022817	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:80022817C>G	uc002kdq.2	-	1	538	c.119G>C	c.(118-120)GGG>GCG	p.G40A	DUS1L_uc002kdp.2_5'Flank|DUS1L_uc002kdr.2_Missense_Mutation_p.G40A|DUS1L_uc002kds.2_RNA|DUS1L_uc002kdt.2_RNA|DUS1L_uc010wvi.1_Missense_Mutation_p.G40A	NM_022156	NP_071439	Q6P1R4	DUS1L_HUMAN	PP3111 protein	40					tRNA processing		flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity			skin(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0211)			GAGCTGTGCCCCGTGGCGCCG	0.682													4	44					0	0	0.000602214	0	0
FASN	2194	broad.mit.edu	37	17	80045273	80045273	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:80045273G>T	uc002kdu.2	-	20	3268	c.3151C>A	c.(3151-3153)CGT>AGT	p.R1051S	FASN_uc002kdw.1_Missense_Mutation_p.R267S	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	1051					energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	GCGGTGACACGGGTGGGCAGG	0.642													4	53					0.000157383	0.00173811	0.000157383	1	0
FOXK2	3607	broad.mit.edu	37	17	80541916	80541916	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr17:80541916G>C	uc002kfn.2	+	6	1302	c.1131G>C	c.(1129-1131)GCG>GCC	p.A377A	FOXK2_uc002kfm.1_Silent_p.A377A|FOXK2_uc010diu.2_Intron	NM_004514	NP_004505	Q01167	FOXK2_HUMAN	forkhead box K2	377					embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0	Breast(20;0.00106)|all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0371)|BRCA - Breast invasive adenocarcinoma(99;0.0415)			CCAATCACGCGGGAGTGCTGT	0.597													4	33					0	0	3.59834e-05	0	0
ENOSF1	55556	broad.mit.edu	37	18	685978	685978	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:685978C>G	uc002kku.3	-	10	759	c.684G>C	c.(682-684)CAG>CAC	p.Q228H	ENOSF1_uc002kkt.3_Missense_Mutation_p.Q146H|ENOSF1_uc010dke.2_RNA|ENOSF1_uc010dkf.2_Missense_Mutation_p.Q249H|ENOSF1_uc002kkv.3_Missense_Mutation_p.Q215H|ENOSF1_uc002kkw.3_Missense_Mutation_p.Q47H|ENOSF1_uc002kkx.3_Missense_Mutation_p.Q152H	NM_017512	NP_059982	Q7L5Y1	ENOF1_HUMAN	enolase superfamily 1 isoform rTS beta	228					cellular amino acid catabolic process	mitochondrion	isomerase activity|metal ion binding			ovary(1)	1						GCATGTCATCCTGGAGATCAG	0.453													4	100					0	0	3.59834e-05	0	0
YES1	7525	broad.mit.edu	37	18	756828	756828	+	Translation_Start_Site	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:756828T>C	uc002kky.2	-	2	221	c.0A>G	c.(-2-2)ATAAT>ATGAT		YES1_uc002kkz.2_Translation_Start_Site	NM_005433	NP_005424	P07947	YES_HUMAN	viral oncogene yes-1 homolog 1						blood coagulation|leukocyte migration|regulation of vascular permeability|T cell costimulation	cytosol|plasma membrane	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|ovary(1)	3					Dasatinib(DB01254)	TGCAGCCCATTATCAAATCTA	0.343													3	66					0	0	0.00024832	0	0
MYOM1	8736	broad.mit.edu	37	18	3067415	3067415	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:3067415C>T	uc002klp.2	-	38	5237	c.4903G>A	c.(4903-4905)GGC>AGC	p.G1635S	MYOM1_uc002klq.2_Missense_Mutation_p.G1539S	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	1635	Ig-like C2-type 5.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GTGCTCACGCCGTTGATGGTG	0.587													11	64					0	0	0.00010058	0	0
ARHGAP28	79822	broad.mit.edu	37	18	6887173	6887173	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:6887173G>T	uc010wzi.1	+	11	1178	c.940G>T	c.(940-942)GTA>TTA	p.V314L	ARHGAP28_uc002knc.2_Missense_Mutation_p.V439L|ARHGAP28_uc002knd.2_Missense_Mutation_p.V332L|ARHGAP28_uc002kne.2_Missense_Mutation_p.V332L|ARHGAP28_uc002knf.2_Missense_Mutation_p.V323L			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	314					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				TCACGTCAAAGTACAGTTTCA	0.498													4	56					0.000157383	0.00173811	0.000157383	1	0
LAMA1	284217	broad.mit.edu	37	18	6973127	6973127	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:6973127C>G	uc002knm.2	-	47	6797	c.6703G>C	c.(6703-6705)GGG>CGG	p.G2235R	LAMA1_uc010wzj.1_Missense_Mutation_p.G1711R	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2235	Laminin G-like 1.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTAGCTGTCCCAGGGGATTTA	0.383													5	84					0	0	0.000602214	0	0
LRRC30	339291	broad.mit.edu	37	18	7231443	7231443	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:7231443G>C	uc010wzk.1	+	1	307	c.307G>C	c.(307-309)GGG>CGG	p.G103R		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	103	LRR 2.									ovary(1)|liver(1)	2						GAACTTGTGCGGGAACCGCCT	0.587													3	66					0	0	0.00024832	0	0
PTPRM	5797	broad.mit.edu	37	18	8143763	8143763	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:8143763G>C	uc002knn.3	+	14	2789	c.2286G>C	c.(2284-2286)TTG>TTC	p.L762F	PTPRM_uc010dkv.2_Missense_Mutation_p.L762F|PTPRM_uc010wzl.1_Missense_Mutation_p.L549F	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	762	Helical; (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				GAGTTGTGTTGGTAATGAAGA	0.418													4	139					0	0	0.00024832	0	0
PTPRM	5797	broad.mit.edu	37	18	8387086	8387086	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:8387086G>C	uc002knn.3	+	29	4525	c.4022G>C	c.(4021-4023)CGG>CCG	p.R1341P	PTPRM_uc010dkv.2_Missense_Mutation_p.R1354P|PTPRM_uc010wzl.1_Missense_Mutation_p.R1128P	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	1341	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				GATGGATATCGGATGGTGCAG	0.502													4	127					0	0	3.59834e-05	0	0
PSMG2	56984	broad.mit.edu	37	18	12706715	12706715	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:12706715C>G	uc002krk.2	+	2	267	c.224C>G	c.(223-225)GCT>GGT	p.A75G	PSMG2_uc002krg.2_Missense_Mutation_p.A44G|PSMG2_uc002krj.1_Missense_Mutation_p.A75G	NM_020232	NP_064617	Q969U7	PSMG2_HUMAN	proteasome (prosome, macropain) assembly	75					proteasome assembly	nucleus	protein binding				0						AGCATAAATGCTGAAGGTATG	0.323													4	106					0	0	0.00024832	0	0
PTPN2	5771	broad.mit.edu	37	18	12802024	12802024	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:12802024G>C	uc002krp.2	-	8	1179	c.985C>G	c.(985-987)CGA>GGA	p.R329G	PTPN2_uc002krl.2_Missense_Mutation_p.R329G|PTPN2_uc002krn.2_Missense_Mutation_p.R352G|PTPN2_uc002kro.2_Missense_Mutation_p.R329G|PTPN2_uc002krm.2_Missense_Mutation_p.R329G	NM_002828	NP_002819	P17706	PTN2_HUMAN	protein tyrosine phosphatase, non-receptor type	329					interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway	endoplasmic reticulum|nucleoplasm	protein binding			skin(2)	2		Lung NSC(161;8.94e-06)				CCTGTACATCGGTCACCTGTC	0.373													4	180					0	0	8.12818e-05	0	0
Unknown	0	broad.mit.edu	37	18	14184039	14184039	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:14184039G>C	uc010xag.1	+	3	728	c.430G>C	c.(430-432)GAG>CAG	p.E144Q	uc002ksv.1_Silent_p.V22V					RecName: Full=Putative ankyrin repeat domain-containing protein 20A5;																		TGTGTATAGTGAGAGCACCTC	0.418													4	254					0	0	0.00024832	0	0
CXADRP3	440224	broad.mit.edu	37	18	14479225	14479225	+	RNA	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:14479225C>G	uc010xai.1	-	3		c.339G>C				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						TGGTGAAATCCGCGACTCCGC	0.572													4	21					0	0	0.00024832	0	0
ESCO1	114799	broad.mit.edu	37	18	19154446	19154446	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:19154446C>A	uc002kth.1	-	4	1293	c.359G>T	c.(358-360)CGG>CTG	p.R120L	ESCO1_uc002kti.1_RNA	NM_052911	NP_443143	Q5FWF5	ESCO1_HUMAN	establishment of cohesion 1 homolog 1	120					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding				0						TTGTGATCTCCGGTTAAGCTG	0.378													6	301					3.59834e-05	0.000429	3.59834e-05	1	0
RIOK3	8780	broad.mit.edu	37	18	21057228	21057228	+	Missense_Mutation	SNP	C	G	G	rs56282762	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:21057228C>G	uc002kui.3	+	11	1957	c.1340C>G	c.(1339-1341)TCG>TGG	p.S447W	RIOK3_uc010dls.2_Missense_Mutation_p.S447W|RIOK3_uc010xas.1_Missense_Mutation_p.S431W|RIOK3_uc010xat.1_Missense_Mutation_p.S191W	NM_003831	NP_003822	O14730	RIOK3_HUMAN	sudD suppressor of bimD6 homolog	447	Protein kinase.				chromosome segregation		ATP binding|protein binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(21;0.000106)|all_epithelial(16;6.74e-07)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0202)|Ovarian(20;0.127)					AGGAATGTCTCGCAGGTAGAC	0.443													3	73					0	0	6.4e-05	0	0
LAMA3	3909	broad.mit.edu	37	18	21441677	21441677	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:21441677C>G	uc002kuq.2	+	35	4576	c.4490C>G	c.(4489-4491)CCA>CGA	p.P1497R	LAMA3_uc002kur.2_Missense_Mutation_p.P1497R	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1497	Laminin IV type A.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCTTTCAACCCAGGCAGCAAC	0.582													3	32					0	0	0.000602214	0	0
TTC39C	125488	broad.mit.edu	37	18	21710287	21710287	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:21710287G>C	uc002kuw.2	+	12	1981	c.1529G>C	c.(1528-1530)CGA>CCA	p.R510P	TTC39C_uc002kuu.2_Missense_Mutation_p.R449P	NM_001135993	NP_001129465	Q8N584	TT39C_HUMAN	tetratricopeptide repeat domain 39C isoform 1	510	TPR 3.						binding			ovary(1)	1						TACTTCCAGCGAGCTGTTAAA	0.398													4	194					0	0	0.00024832	0	0
OSBPL1A	114876	broad.mit.edu	37	18	21894247	21894247	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:21894247C>A	uc002kve.2	-	12	1109	c.935G>T	c.(934-936)CGG>CTG	p.R312L	OSBPL1A_uc010xbc.1_5'Flank|OSBPL1A_uc002kvf.3_Missense_Mutation_p.R92L	NM_080597	NP_542164	Q9BXW6	OSBL1_HUMAN	oxysterol-binding protein-like 1A isoform B	312	PH.				cholesterol metabolic process|lipid transport|vesicle-mediated transport		phospholipid binding			ovary(4)	4	all_cancers(21;0.000396)|all_epithelial(16;4.36e-06)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0505)|Ovarian(20;0.17)					CTTAGGAACCCGGAAGCCATG	0.358													9	125					0.000673444	0.00655963	0.000673444	1	0
IMPACT	55364	broad.mit.edu	37	18	22023024	22023024	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:22023024G>T	uc002kvh.3	+	7	614	c.502G>T	c.(502-504)GAA>TAA	p.E168*	IMPACT_uc002kvg.3_Nonsense_Mutation_p.E150*	NM_018439	NP_060909	Q9P2X3	IMPCT_HUMAN	Impact homolog	168											0	all_cancers(21;0.00018)|all_epithelial(16;1.5e-06)|Lung NSC(20;0.0027)|all_lung(20;0.0085)|Colorectal(14;0.0361)|Ovarian(20;0.0991)					AGTAGAAGTAGAAGAATTACC	0.368													8	96					0.000978159	0.00917326	0.000978159	1	0
PSMA8	143471	broad.mit.edu	37	18	23738188	23738188	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:23738188G>T	uc002kvq.2	+	4	589	c.475G>T	c.(475-477)GGT>TGT	p.G159C	PSMA8_uc002kvo.2_Missense_Mutation_p.G115C|PSMA8_uc002kvp.2_Missense_Mutation_p.G153C|PSMA8_uc002kvr.2_Missense_Mutation_p.G127C	NM_144662	NP_653263	Q8TAA3	PSA7L_HUMAN	proteasome alpha 8 subunit isoform 1	159					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	threonine-type endopeptidase activity			skin(1)	1	all_cancers(21;0.000585)|Lung NSC(5;0.00148)|all_lung(6;0.0038)|Ovarian(20;0.124)		OV - Ovarian serous cystadenocarcinoma(3;0.000324)|all cancers(3;0.000954)|LUSC - Lung squamous cell carcinoma(2;0.181)			AGATCCTTCTGGTACTTATCA	0.328													9	309					3.27435e-08	4.29929e-07	0.000219431	1	0
DSC2	1824	broad.mit.edu	37	18	28662900	28662900	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:28662900G>A	uc002kwl.3	-	8	1523	c.1069C>T	c.(1069-1071)CGT>TGT	p.R357C	DSC2_uc002kwk.3_Missense_Mutation_p.R357C	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	357	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			ACAGAAGTACGAGTAAATGTT	0.269													6	51					0	0	3.59834e-05	0	0
DSG3	1830	broad.mit.edu	37	18	29049090	29049090	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:29049090C>T	uc002kws.2	+	12	1784	c.1675C>T	c.(1675-1677)CCT>TCT	p.P559S		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	559	Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ACAGATACCTCCTGGAGTATA	0.448													32	116					0	0	0.00058488	0	0
MCART2	147407	broad.mit.edu	37	18	29340133	29340133	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:29340133C>T	uc002kxa.2	-	1	711	c.492G>A	c.(490-492)CTG>CTA	p.L164L		NM_001034172	NP_001029344	Q3SY17	MCAR2_HUMAN	mitochondrial carrier triple repeat 2	164	Solcar 2.				transport	integral to membrane|mitochondrial inner membrane				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(10;0.0539)			CATGACATTTCAGTGCCTTGA	0.428													29	189					0	0	0.000491102	0	0
WBP11P1	441818	broad.mit.edu	37	18	30092595	30092595	+	RNA	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:30092595G>A	uc010dmc.2	+	1		c.970G>A				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						CTGAGGACGTGGATCAAGATA	0.463													5	70					0	0	0.000602214	0	0
KLHL14	57565	broad.mit.edu	37	18	30254711	30254711	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:30254711C>G	uc002kxm.1	-	9	2184	c.1796G>C	c.(1795-1797)TGG>TCG	p.W599S	KLHL14_uc010dmd.1_Missense_Mutation_p.W148S	NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	599	Kelch 6.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						GAGTTCTGTCCAGGTTCCTTT	0.473													4	135					0	0	0.00024832	0	0
ASXL3	80816	broad.mit.edu	37	18	31324745	31324745	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:31324745G>A	uc010dmg.1	+	12	4988	c.4933G>A	c.(4933-4935)GAA>AAA	p.E1645K	ASXL3_uc002kxq.2_Missense_Mutation_p.E1352K	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1645					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TATCAAAACTGAACATGCCAA	0.438											OREG0024911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	76					0	0	0.00010058	0	0
CELF4	56853	broad.mit.edu	37	18	34901808	34901808	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:34901808C>G	uc002lae.2	-	3	802	c.406G>C	c.(406-408)GAG>CAG	p.E136Q	CELF4_uc010dnd.1_Missense_Mutation_p.E136Q|CELF4_uc002lag.2_Missense_Mutation_p.E136Q|CELF4_uc002laf.2_Missense_Mutation_p.E132Q|CELF4_uc002lai.2_Missense_Mutation_p.E132Q	NM_020180	NP_064565	Q9BZC1	CELF4_HUMAN	bruno-like 4, RNA binding protein isoform 1	136	Sufficient for RNA-binding and MSE- dependent splicing activity.				embryo development|germ cell development|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	BRE binding|nucleotide binding|translation repressor activity, nucleic acid binding			ovary(2)	2						CCTCGGCTCTCGCTGTCCGCA	0.527											OREG0024927	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	39					0	0	0.000602214	0	0
PIK3C3	5289	broad.mit.edu	37	18	39575890	39575890	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:39575890C>G	uc002lap.2	+	8	881	c.823C>G	c.(823-825)CGG>GGG	p.R275G	PIK3C3_uc010xcl.1_Missense_Mutation_p.R212G	NM_002647	NP_002638	Q8NEB9	PK3C3_HUMAN	catalytic phosphatidylinositol 3-kinase 3	275					cell cycle|cytokinesis|fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	midbody|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|protein binding			lung(8)|ovary(1)|breast(1)	10						CAAGCTTGCCCGGAGTTTAAG	0.333										TSP Lung(28;0.18)			3	39					0	0	0.000602214	0	0
SLC14A1	6563	broad.mit.edu	37	18	43319224	43319224	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:43319224C>G	uc010xcn.1	+	8	1079	c.760C>G	c.(760-762)CCA>GCA	p.P254A	SLC14A1_uc010dnk.2_Missense_Mutation_p.P310A|SLC14A1_uc002lbf.3_Missense_Mutation_p.P254A|SLC14A1_uc002lbg.3_RNA|SLC14A1_uc010xco.1_Missense_Mutation_p.P149A|SLC14A1_uc002lbh.3_Missense_Mutation_p.P146A|SLC14A1_uc002lbi.3_Missense_Mutation_p.P122A|SLC14A1_uc002lbj.3_Missense_Mutation_p.P310A|SLC14A1_uc002lbk.3_Missense_Mutation_p.P254A	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	254	Helical; (Potential).					integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						ACTCTCCTCCCCACTCATGTG	0.522													5	88					0	0	3.59834e-05	0	0
KIAA1632	57724	broad.mit.edu	37	18	43519571	43519571	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:43519571G>T	uc002lbm.2	-	10	2194	c.2094C>A	c.(2092-2094)GCC>GCA	p.A698A	KIAA1632_uc002lbo.1_Silent_p.A698A	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	698					autophagy						0						CTTACCTTTTGGCCTTCAGCA	0.408													8	78					0.000978159	0.00917326	0.000978159	1	0
SMAD7	4092	broad.mit.edu	37	18	46474773	46474773	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:46474773C>A	uc002ldg.2	-	2	935	c.648G>T	c.(646-648)ATG>ATT	p.M216I	SMAD7_uc010xde.1_Missense_Mutation_p.M1I	NM_005904	NP_005895	O15105	SMAD7_HUMAN	SMAD family member 7	216	Important for interaction with SMURF2.				adherens junction assembly|artery morphogenesis|BMP signaling pathway|cellular protein complex localization|negative regulation of BMP signaling pathway|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of peptidyl-serine phosphorylation|negative regulation of peptidyl-threonine phosphorylation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription by competitive promoter binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of ubiquitin-protein ligase activity|pathway-restricted SMAD protein phosphorylation|positive regulation of anti-apoptosis|positive regulation of cell-cell adhesion|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein stabilization|regulation of activin receptor signaling pathway|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	centrosome|cytosol|nucleolus|plasma membrane|transcription factor complex	activin binding|beta-catenin binding|I-SMAD binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding				0	Colorectal(1;0.0518)					TGAGAAAATCCATCGGGTATC	0.393													8	145					9.31168e-06	0.000114714	0.000151284	1	0
ACAA2	10449	broad.mit.edu	37	18	47329069	47329069	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:47329069G>T	uc002ldw.3	-	2	568	c.171C>A	c.(169-171)GGC>GGA	p.G57G	ACAA2_uc002ldx.3_Silent_p.G54G	NM_006111	NP_006102	P42765	THIM_HUMAN	acetyl-coenzyme A acyltransferase 2	57					anti-apoptosis|cholesterol biosynthetic process		acetyl-CoA C-acyltransferase activity|protein binding			ovary(1)	1						GCAGGACATTGCCCATAATCA	0.403													7	186					0.000673444	0.00655963	0.000673444	1	0
SMAD4	4089	broad.mit.edu	37	18	48584778	48584778	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:48584778G>C	uc010xdp.1	+	7	1394	c.856G>C	c.(856-858)GGC>CGC	p.G286R	SMAD4_uc002lfb.3_Missense_Mutation_p.G131R	NM_005359	NP_005350	Q13485	SMAD4_HUMAN	mothers against decapentaplegic homolog 4	286	SAD.				BMP signaling pathway|negative regulation of cell growth|negative regulation of protein catabolic process|negative regulation of transcription, DNA-dependent|palate development|positive regulation of epithelial to mesenchymal transition|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of transforming growth factor-beta2 production|response to hypoxia|response to transforming growth factor beta stimulus|SMAD protein complex assembly|SMAD protein signal transduction|transforming growth factor beta receptor signaling pathway	activin responsive factor complex|centrosome|cytosol	I-SMAD binding|protein homodimerization activity|R-SMAD binding|transcription regulatory region DNA binding|transforming growth factor beta receptor, common-partner cytoplasmic mediator activity	p.0?(35)|p.?(2)		pancreas(170)|large_intestine(108)|thyroid(19)|lung(11)|small_intestine(9)|upper_aerodigestive_tract(8)|biliary_tract(8)|ovary(7)|breast(6)|stomach(5)|oesophagus(3)|testis(2)|central_nervous_system(2)|haematopoietic_and_lymphoid_tissue(2)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|kidney(1)|urinary_tract(1)|vulva(1)|skin(1)|NS(1)	369		all_cancers(7;0.203)|Colorectal(6;0.003)|all_epithelial(6;0.00336)		Colorectal(16;0.0032)|COAD - Colon adenocarcinoma(17;0.0708)|READ - Rectum adenocarcinoma(32;0.155)		CCACCAAAACGGCCATCTTCA	0.463									Juvenile_Polyposis|Hereditary_Hemorrhagic_Telangiectasia				4	139					0	0	0.00024832	0	0
MEX3C	51320	broad.mit.edu	37	18	48703557	48703557	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:48703557G>T	uc002lfc.3	-	2	1144	c.1144C>A	c.(1144-1146)CGA>AGA	p.R382R		NM_016626	NP_057710	Q5U5Q3	MEX3C_HUMAN	ring finger and KH domain containing 2	382	KH 2.					cytoplasm|nucleus	RNA binding|zinc ion binding			lung(2)|ovary(1)|skin(1)	4		Colorectal(6;0.003)|all_epithelial(6;0.0473)		Colorectal(16;0.0175)|READ - Rectum adenocarcinoma(32;0.15)		TCCCGTGCTCGGTCAACATTT	0.413													6	146					0.000442599	0.00445669	0.000442599	1	0
C18orf26	284254	broad.mit.edu	37	18	52258570	52258570	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:52258570G>C	uc002lfq.1	+	1	181	c.135G>C	c.(133-135)CCG>CCC	p.P45P	C18orf26_uc002lfp.1_Silent_p.P48P	NM_173629	NP_775900	Q8N1N2	CR026_HUMAN	hypothetical protein LOC284254	45						integral to membrane					0				Colorectal(16;0.0193)|READ - Rectum adenocarcinoma(59;0.178)		AAAACCAGCCGGTGAGTGTCC	0.368													4	101					0	0	3.59834e-05	0	0
TCF4	6925	broad.mit.edu	37	18	52928714	52928714	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:52928714C>A	uc002lfz.2	-	12	1585	c.973G>T	c.(973-975)GGG>TGG	p.G325W	TCF4_uc002lfw.3_Missense_Mutation_p.G165W|TCF4_uc010xdu.1_Missense_Mutation_p.G195W|TCF4_uc010xdv.1_Missense_Mutation_p.G195W|TCF4_uc002lfx.2_Missense_Mutation_p.G254W|TCF4_uc010xdw.1_Missense_Mutation_p.G195W|TCF4_uc002lfy.2_Missense_Mutation_p.G283W|TCF4_uc010xdx.1_Missense_Mutation_p.G301W|TCF4_uc010dph.1_Missense_Mutation_p.G325W|TCF4_uc010xdy.1_Missense_Mutation_p.G301W|TCF4_uc002lga.2_Missense_Mutation_p.G427W|TCF4_uc002lgb.1_Missense_Mutation_p.G165W|TCF4_uc010dpi.2_Missense_Mutation_p.G331W|TCF4_uc002lfv.2_Missense_Mutation_p.G109W	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	325					positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		AGTGCTTTCCCCAGAGCATCT	0.453													8	165					0.000442599	0.00445669	0.000442599	1	0
NEDD4L	23327	broad.mit.edu	37	18	55992363	55992364	+	Missense_Mutation	DNP	CG	GT	GT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:55992363_55992364CG>GT	uc002lgy.2	+	9	923_924	c.649_650CG>GT	c.(649-651)CGG>GTG	p.R217V	NEDD4L_uc002lgz.2_Missense_Mutation_p.R217V|NEDD4L_uc002lgx.2_Missense_Mutation_p.R217V|NEDD4L_uc010xee.1_Missense_Mutation_p.R96V|NEDD4L_uc002lhc.2_Missense_Mutation_p.R209V|NEDD4L_uc002lhd.2_Missense_Mutation_p.R96V|NEDD4L_uc002lhb.2_Missense_Mutation_p.R96V|NEDD4L_uc002lhe.2_Missense_Mutation_p.R209V|NEDD4L_uc002lhf.2_Missense_Mutation_p.R96V|NEDD4L_uc002lhg.2_Missense_Mutation_p.R96V|NEDD4L_uc002lhh.2_Missense_Mutation_p.R96V|NEDD4L_uc010dpm.1_Missense_Mutation_p.R68V	NM_001144967	NP_001138439	Q96PU5	NED4L_HUMAN	neural precursor cell expressed, developmentally	217	WW 1.				cellular sodium ion homeostasis|excretion|interspecies interaction between organisms|positive regulation of endocytosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of protein catabolic process|response to metal ion|sodium ion transport|water homeostasis	cytoplasm	protein binding|sodium channel regulator activity|ubiquitin-protein ligase activity			lung(4)	4						CCACAACAACCGGACCACTCAG	0.54													4	169					0	0	6.4e-05	0	0
ALPK2	115701	broad.mit.edu	37	18	56165303	56165303	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:56165303C>G	uc002lhj.3	-	12	6488	c.6274G>C	c.(6274-6276)GGC>CGC	p.G2092R		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	2092	Alpha-type protein kinase.			G -> D (in Ref. 1; BX647796).			ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						GTTGCTATGCCAACGTCAGTT	0.498													4	79					0	0	0.000157383	0	0
ALPK2	115701	broad.mit.edu	37	18	56204264	56204264	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:56204264G>A	uc002lhj.3	-	5	3369	c.3155C>T	c.(3154-3156)CCT>CTT	p.P1052L	ALPK2_uc002lhk.1_Missense_Mutation_p.P383L	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1052							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CACTTGGGAAGGAAATTGGGA	0.493													25	102					0	0	0.000720815	0	0
ZNF532	55205	broad.mit.edu	37	18	56606706	56606706	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:56606706A>G	uc002lho.2	+	6	3105	c.2558A>G	c.(2557-2559)GAT>GGT	p.D853G	ZNF532_uc002lhp.2_Missense_Mutation_p.D851G|ZNF532_uc010xeg.1_Missense_Mutation_p.D851G|ZNF532_uc002lhr.2_Missense_Mutation_p.D851G|ZNF532_uc002lhs.2_Missense_Mutation_p.D851G	NM_018181	NP_060651	Q9HCE3	ZN532_HUMAN	zinc finger protein 532	853	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						GTGTACTCTGATGTGGCTGCT	0.428													4	185					0	0	0.00024832	0	0
ZCCHC2	54877	broad.mit.edu	37	18	60237367	60237367	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:60237367C>A	uc002lip.3	+	12	1878	c.1878C>A	c.(1876-1878)GAC>GAA	p.D626E	ZCCHC2_uc002lio.2_RNA|ZCCHC2_uc002liq.2_Missense_Mutation_p.D96E	NM_017742	NP_060212	Q9C0B9	ZCHC2_HUMAN	zinc finger, CCHC domain containing 2	626					cell communication	cytoplasm	nucleic acid binding|phosphatidylinositol binding|zinc ion binding			lung(1)|prostate(1)	2						CTGGACATGACACATGTGGAG	0.333													4	66					0.000602214	0.00604416	0.000602214	1	0
SERPINB7	8710	broad.mit.edu	37	18	61459657	61459657	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:61459657G>T	uc002ljl.2	+	3	295	c.199G>T	c.(199-201)GGA>TGA	p.G67*	SERPINB7_uc002ljm.2_Nonsense_Mutation_p.G67*|SERPINB7_uc010xet.1_Intron|SERPINB7_uc010dqg.2_Nonsense_Mutation_p.G67*	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	67					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				CTCAGGATATGGAAACTCTTC	0.294													7	144					0.000673444	0.00655963	0.000673444	1	0
TMX3	54495	broad.mit.edu	37	18	66351431	66351431	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:66351431G>T	uc002lkf.2	-	12	979	c.844C>A	c.(844-846)CAT>AAT	p.H282N	TMX3_uc010xez.1_Missense_Mutation_p.H141N	NM_019022	NP_061895	Q96JJ7	TMX3_HUMAN	thioredoxin domain containing 10 precursor	282	Lumenal (Potential).				cell redox homeostasis|glycerol ether metabolic process	endoplasmic reticulum membrane|integral to membrane	electron carrier activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			skin(1)	1						ACCTACCTATGGAAGAGGTCT	0.313													8	231					0.000442599	0.00445669	0.000442599	1	0
RTTN	25914	broad.mit.edu	37	18	67872519	67872519	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:67872519G>T	uc002lkp.2	-	2	132	c.64C>A	c.(64-66)CTC>ATC	p.L22I	RTTN_uc010xfb.1_5'UTR|RTTN_uc002lkq.1_Missense_Mutation_p.L22I	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	22							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				ATACTCTTGAGAGCGCGCTCC	0.443													11	207					2.31682e-05	0.000280436	0.000308642	1	0
CNDP1	84735	broad.mit.edu	37	18	72247448	72247448	+	Missense_Mutation	SNP	C	G	G	rs144587048		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:72247448C>G	uc002llq.2	+	10	1461	c.1250C>G	c.(1249-1251)CCG>CGG	p.P417R	CNDP1_uc002lls.2_Missense_Mutation_p.P220R	NM_032649	NP_116038	Q96KN2	CNDP1_HUMAN	carnosinase 1 precursor	417					proteolysis	extracellular region	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity|tripeptidase activity				0		Esophageal squamous(42;0.129)|Prostate(75;0.157)|Melanoma(33;0.211)		BRCA - Breast invasive adenocarcinoma(31;0.109)		GGACTACACCCGTGGATTGCA	0.443													3	36					0	0	3.59834e-05	0	0
ZNF407	55628	broad.mit.edu	37	18	72344769	72344769	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr18:72344769G>T	uc002llw.2	+	1	1851	c.1794G>T	c.(1792-1794)TTG>TTT	p.L598F	ZNF407_uc010xfc.1_Missense_Mutation_p.L598F|ZNF407_uc010dqu.1_Missense_Mutation_p.L598F|ZNF407_uc002llu.2_Missense_Mutation_p.L597F	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	598					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		TTATATCCTTGGATGAAATAA	0.378													9	267					0.000978159	0.00917326	0.000978159	1	0
CDC34	997	broad.mit.edu	37	19	535858	535858	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:535858G>T	uc002lov.2	+	2	398	c.199G>T	c.(199-201)GAC>TAC	p.D67Y		NM_004359	NP_004350	P49427	UB2R1_HUMAN	ubiquitin-conjugating enzyme Cdc34	67					DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|negative regulation of cAMP-mediated signaling|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination	cytoplasm|nucleus	ATP binding|protein binding|ubiquitin-protein ligase activity				0		all_cancers(10;1.94e-35)|all_epithelial(18;5.94e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTTCCCCATCGACTACCCATA	0.632													6	262					0.000673444	0.00655963	0.000673444	1	0
HCN2	610	broad.mit.edu	37	19	610322	610322	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:610322C>G	uc002lpe.2	+	5	1554	c.1501C>G	c.(1501-1503)CAC>GAC	p.H501D		NM_001194	NP_001185	Q9UL51	HCN2_HUMAN	hyperpolarization activated cyclic	501	Cytoplasmic (Potential).				cell-cell signaling|muscle contraction	voltage-gated potassium channel complex	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCAGAAGATCCACGACTACTA	0.567													4	166					0	0	0.000157383	0	0
DAZAP1	26528	broad.mit.edu	37	19	1425899	1425899	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:1425899G>C	uc002lsn.2	+	7	675	c.486G>C	c.(484-486)GAG>GAC	p.E162D	DAZAP1_uc002lsm.2_Missense_Mutation_p.E162D|DAZAP1_uc002lso.2_Missense_Mutation_p.E161D|DAZAP1_uc002lsl.1_Missense_Mutation_p.E162D	NM_018959	NP_061832	Q96EP5	DAZP1_HUMAN	DAZ associated protein 1 isoform b	162	RRM 2.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleotide binding|RNA binding			breast(1)	1		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTACTTTCGAGGACGAACAAT	0.418													4	184					0	0	0.00024832	0	0
REXO1	57455	broad.mit.edu	37	19	1820371	1820371	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:1820371G>A	uc002lua.3	-	6	2513	c.2418C>T	c.(2416-2418)CCC>CCT	p.P806P	REXO1_uc010dsq.2_Silent_p.P115P|REXO1_uc010xgs.1_5'UTR|REXO1_uc010dsp.1_5'Flank|uc002lub.1_5'Flank	NM_020695	NP_065746	Q8N1G1	REXO1_HUMAN	transcription elongation factor B polypeptide 3	806						nucleus	exonuclease activity|nucleic acid binding				0		Ovarian(11;1.78e-06)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAAACTCTTTGGGGATAATGG	0.567													5	101					0	0	3.59834e-05	0	0
PIP5K1C	23396	broad.mit.edu	37	19	3667345	3667345	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:3667345G>C	uc002lyj.1	-	2	158	c.101C>G	c.(100-102)GCT>GGT	p.A34G	PIP5K1C_uc010xhq.1_Missense_Mutation_p.A34G|PIP5K1C_uc010xhr.1_Missense_Mutation_p.A34G	NM_012398	NP_036530	O60331	PI51C_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	34					axon guidance	cytosol|plasma membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			stomach(2)|skin(2)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.95e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0026)|STAD - Stomach adenocarcinoma(1328;0.183)		CTTCTTCTGAGCCAAACCTGC	0.428													3	40					0	0	3.59834e-05	0	0
TJP3	27134	broad.mit.edu	37	19	3738585	3738585	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:3738585G>A	uc010xhv.1	+	11	1416	c.1416G>A	c.(1414-1416)CGG>CGA	p.R472R	TJP3_uc010xhs.1_Silent_p.R439R|TJP3_uc010xht.1_Silent_p.R403R|TJP3_uc010xhu.1_Silent_p.R448R|TJP3_uc010xhw.1_Silent_p.R458R	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	453	PDZ 3.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		ACCTGACACGGGAGGAGGCAG	0.577													15	127					0	0	0.000375601	0	0
UBXN6	80700	broad.mit.edu	37	19	4446513	4446513	+	Missense_Mutation	SNP	G	A	A	rs145303168	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:4446513G>A	uc002man.1	-	8	1000	c.904C>T	c.(904-906)CGG>TGG	p.R302W	UBXN6_uc010dty.1_Missense_Mutation_p.R206W|UBXN6_uc002mam.1_Missense_Mutation_p.R249W	NM_025241	NP_079517	Q9BZV1	UBXN6_HUMAN	UBX domain protein 6	302						microtubule organizing center|nucleus	protein binding				0						CTCTGCTCCCGCTTGATCTCC	0.692													5	40					0	0	0.000602214	0	0
DPP9	91039	broad.mit.edu	37	19	4683594	4683594	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:4683594G>T	uc002mba.2	-	19	2484	c.2226C>A	c.(2224-2226)GCC>GCA	p.A742A		NM_139159	NP_631898	Q86TI2	DPP9_HUMAN	dipeptidylpeptidase 9	713					proteolysis	cytosol|membrane	aminopeptidase activity|serine-type peptidase activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00884)		CATACTTCTCGGCCACGAACT	0.632													5	84					1.06961e-07	1.39386e-06	0.000157383	1	0
KDM4B	23030	broad.mit.edu	37	19	5082444	5082444	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:5082444G>C	uc002mbq.3	+	9	1073	c.847G>C	c.(847-849)GGG>CGG	p.G283R	KDM4B_uc010xil.1_Missense_Mutation_p.G283R|KDM4B_uc010xim.1_Missense_Mutation_p.G283R|KDM4B_uc002mbr.3_Missense_Mutation_p.G41R	NM_015015	NP_055830	O94953	KDM4B_HUMAN	jumonji domain containing 2B	283	JmjC.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			lung(1)	1						CTTCAATCACGGGTTCAACTG	0.582													3	42					0	0	0.00024832	0	0
GTF2F1	2962	broad.mit.edu	37	19	6380387	6380387	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:6380387C>G	uc002meq.2	-	13	1744	c.1459G>C	c.(1459-1461)GAG>CAG	p.E487Q	GTF2F1_uc010xjb.1_Missense_Mutation_p.E308Q|GTF2F1_uc010xjc.1_Missense_Mutation_p.E402Q	NM_002096	NP_002087	P35269	T2FA_HUMAN	general transcription factor IIF, polypeptide 1,	487					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|response to virus|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cell junction|transcription factor TFIIF complex	catalytic activity|DNA binding|phosphatase activator activity|transcription coactivator activity|transcription factor binding				0						ACTGTCTGCTCGCTGCTCAGC	0.557													4	206					0	0	0.00024832	0	0
CRB3	92359	broad.mit.edu	37	19	6465610	6465610	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:6465610C>G	uc002mey.2	+	3	668	c.137C>G	c.(136-138)TCC>TGC	p.S46C	CRB3_uc002mez.2_Missense_Mutation_p.S46C|CRB3_uc002mfa.2_Missense_Mutation_p.S46C	NM_139161	NP_631900	Q9BUF7	CRUM3_HUMAN	crumbs 3 isoform a precursor	46	Extracellular (Potential).				protein localization in plasma membrane|tight junction assembly	apical plasma membrane|integral to membrane|tight junction	SH3 domain binding				0						TCCACCAGCTCCAGCTCCGAT	0.478													4	186					0	0	0.000602214	0	0
TRIP10	9322	broad.mit.edu	37	19	6741257	6741257	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:6741257G>T	uc002mfs.2	+	3	228	c.162G>T	c.(160-162)CTG>CTT	p.L54L	TRIP10_uc010dux.1_Silent_p.L54L|TRIP10_uc002mfr.2_Silent_p.L54L|TRIP10_uc010duy.2_RNA|TRIP10_uc010duz.2_5'UTR	NM_004240	NP_004231	Q15642	CIP4_HUMAN	thyroid hormone receptor interactor 10	54	FCH.|Required for podosome formation and interaction with AKAP9 and microtubules.|Induction of membrane tubulation.|Required for translocation to the plasma membrane in response to insulin (By similarity).				actin cytoskeleton organization|cell communication|endocytosis|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell projection|cytoskeleton|cytosol|Golgi apparatus|lysosome|perinuclear region of cytoplasm|phagocytic cup	GTPase activator activity|identical protein binding|lipid binding			ovary(1)	1						AAAAATATCTGCCCAAGAGAC	0.612													4	29					0.000157383	0.00173811	0.000157383	1	0
TRIP10	9322	broad.mit.edu	37	19	6743069	6743069	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:6743069C>A	uc002mfs.2	+	4	355	c.289C>A	c.(289-291)CGT>AGT	p.R97S	TRIP10_uc010dux.1_Missense_Mutation_p.R97S|TRIP10_uc002mfr.2_Missense_Mutation_p.R97S|TRIP10_uc010duy.2_RNA|TRIP10_uc010duz.2_Intron	NM_004240	NP_004231	Q15642	CIP4_HUMAN	thyroid hormone receptor interactor 10	97	Required for podosome formation and interaction with AKAP9 and microtubules.|Induction of membrane tubulation.|Required for translocation to the plasma membrane in response to insulin (By similarity).				actin cytoskeleton organization|cell communication|endocytosis|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell projection|cytoskeleton|cytosol|Golgi apparatus|lysosome|perinuclear region of cytoplasm|phagocytic cup	GTPase activator activity|identical protein binding|lipid binding			ovary(1)	1						CCTCAGTGTCCGTGTATGTCT	0.532													5	124					0.000274275	0.00290969	0.000274275	1	0
EMR1	2015	broad.mit.edu	37	19	6913757	6913757	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:6913757C>A	uc002mfw.2	+	11	1254	c.1216C>A	c.(1216-1218)CTG>ATG	p.L406M	EMR1_uc010dvc.2_Missense_Mutation_p.L406M|EMR1_uc010dvb.2_Missense_Mutation_p.L354M|EMR1_uc010xji.1_Missense_Mutation_p.L265M|EMR1_uc010xjj.1_Missense_Mutation_p.L229M	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	406	Ser/Thr-rich.|Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					CACAGTCTTCCTGGAGAGTGT	0.478													7	117					0.000274275	0.00290969	0.000274275	1	0
INSR	3643	broad.mit.edu	37	19	7168046	7168046	+	Nonsense_Mutation	SNP	T	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:7168046T>A	uc002mgd.1	-	7	1652	c.1543A>T	c.(1543-1545)AGA>TGA	p.R515*	INSR_uc002mge.1_Nonsense_Mutation_p.R515*|INSR_uc002mgf.2_Nonsense_Mutation_p.R515*	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	515					activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GGCTCCCATCTCAGCAAGATC	0.438													50	354					0	0	0.000781405	0	0
ARHGEF18	23370	broad.mit.edu	37	19	7521227	7521227	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:7521227C>A	uc002mgi.2	+	8	1808	c.1555C>A	c.(1555-1557)CTG>ATG	p.L519M	ARHGEF18_uc010xjm.1_Missense_Mutation_p.L361M|ARHGEF18_uc002mgh.2_Missense_Mutation_p.L361M|ARHGEF18_uc002mgj.1_Missense_Mutation_p.L162M	NM_001130955	NP_001124427	Q6ZSZ5	ARHGI_HUMAN	Rho/Rac guanine nucleotide exchange factor 18	519	PH.				actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell shape|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1		Renal(5;0.0902)				CCTGGCTATCCTGCTGACCGA	0.483													10	424					0.000151284	0.00173001	0.000151284	1	0
MCOLN1	57192	broad.mit.edu	37	19	7595189	7595189	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:7595189G>T	uc002mgo.2	+	12	1502	c.1377G>T	c.(1375-1377)ATG>ATT	p.M459I	MCOLN1_uc002mgp.2_Missense_Mutation_p.M424I	NM_020533	NP_065394	Q9GZU1	MCLN1_HUMAN	mucolipin 1	459					calcium ion transport|cellular iron ion homeostasis|transferrin transport	integral to plasma membrane|late endosome membrane|lysosomal membrane	cation channel activity|iron ion transmembrane transporter activity			breast(1)	1						CACTCTCCATGGTGTCTGAGT	0.652													9	162					1.58986e-06	2.00859e-05	0.000673444	1	0
MCOLN1	57192	broad.mit.edu	37	19	7595366	7595366	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:7595366C>G	uc002mgo.2	+	12	1679	c.1554C>G	c.(1552-1554)ACC>ACG	p.T518T	MCOLN1_uc002mgp.2_Silent_p.T483T	NM_020533	NP_065394	Q9GZU1	MCLN1_HUMAN	mucolipin 1	518					calcium ion transport|cellular iron ion homeostasis|transferrin transport	integral to plasma membrane|late endosome membrane|lysosomal membrane	cation channel activity|iron ion transmembrane transporter activity			breast(1)	1						CGCTCATCACCGGCGCCTACG	0.622													4	173					0	0	0.00024832	0	0
FBN3	84467	broad.mit.edu	37	19	8156383	8156383	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:8156383G>A	uc002mjf.2	-	47	6018	c.5997C>T	c.(5995-5997)GGC>GGT	p.G1999G	FBN3_uc002mje.2_5'Flank	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1999	EGF-like 32; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						AGAGGACAAAGCCAGGTGGGC	0.592													16	71					0	0	0.000958276	0	0
MUC16	94025	broad.mit.edu	37	19	8976756	8976756	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:8976756C>T	uc002mkp.2	-	73	42514	c.42310G>A	c.(42310-42312)GGG>AGG	p.G14104R	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.G904R|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGAAGGACCCCCTCGGTGGAG	0.562													10	60					0	0	0.000978159	0	0
MUC16	94025	broad.mit.edu	37	19	9046067	9046067	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:9046067C>G	uc002mkp.2	-	5	35768	c.35564G>C	c.(35563-35565)GGG>GCG	p.G11855A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11857	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTTTCTGTCCCTGGATGGGT	0.493													4	88					0	0	0.000157383	0	0
MUC16	94025	broad.mit.edu	37	19	9050244	9050244	+	Splice_Site	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:9050244C>G	uc002mkp.2	-	5	31592	c.31388_splice	c.e5-1	p.G10463_splice		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16						cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGTGTAGTCCTGTAAATTGG	0.463													4	106					0	0	0.00024832	0	0
MUC16	94025	broad.mit.edu	37	19	9062025	9062025	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:9062025G>T	uc002mkp.2	-	3	25625	c.25421C>A	c.(25420-25422)TCT>TAT	p.S8474Y		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8476	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGCTTCAGTAGAGATGTCTGG	0.502													9	129					0.000673444	0.00655963	0.000673444	1	0
MUC16	94025	broad.mit.edu	37	19	9063558	9063558	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:9063558G>T	uc002mkp.2	-	3	24092	c.23888C>A	c.(23887-23889)CCC>CAC	p.P7963H		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7965	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCCAGAAGGGGAGGGCTCAT	0.458													13	64					6.71089e-19	9.00337e-18	0.00010058	1	0
MUC16	94025	broad.mit.edu	37	19	9076829	9076829	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:9076829G>A	uc002mkp.2	-	3	10821	c.10617C>T	c.(10615-10617)TCC>TCT	p.S3539S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3540	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGATGGTGGTGGAGATACCTG	0.542													16	107					0	0	0.000422831	0	0
MUC16	94025	broad.mit.edu	37	19	9091124	9091124	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:9091124C>A	uc002mkp.2	-	1	895	c.691G>T	c.(691-693)GGG>TGG	p.G231W		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	231	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAAAGTGTCCCAAATGATGGG	0.458													20	107					7.45023e-12	9.95194e-11	0.000175454	1	0
OR7E24	26648	broad.mit.edu	37	19	9362103	9362103	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:9362103G>C	uc002mlb.1	+	1	384	c.384G>C	c.(382-384)ATG>ATC	p.M128I		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	128	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTGCATGTATGGATGACATGC	0.502													4	117					0	0	3.59834e-05	0	0
COL5A3	50509	broad.mit.edu	37	19	10088086	10088086	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:10088086C>A	uc002mmq.1	-	43	3275	c.3189G>T	c.(3187-3189)CTG>CTT	p.L1063L		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1063	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CAGGGGGTCCCAGAGGCCCCA	0.652													7	137					1.58986e-06	2.00859e-05	0.000673444	1	0
DNMT1	1786	broad.mit.edu	37	19	10249209	10249209	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:10249209G>A	uc002mng.2	-	34	4153	c.3973C>T	c.(3973-3975)CCT>TCT	p.P1325S	DNMT1_uc002mne.2_RNA|DNMT1_uc002mnf.2_Missense_Mutation_p.P249S|DNMT1_uc010xlc.1_Missense_Mutation_p.P1341S|DNMT1_uc002mnh.2_Missense_Mutation_p.P1220S|DNMT1_uc010xld.1_Missense_Mutation_p.P1325S	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	1325	Catalytic.|Interaction with the PRC2/EED-EZH2 complex (By similarity).				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	GGGAACAGAGGGAGCTTCTCT	0.637													14	71					0	0	0.000151284	0	0
MRPL4	51073	broad.mit.edu	37	19	10367417	10367417	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:10367417C>A	uc002mnm.2	+	6	515	c.361C>A	c.(361-363)CGG>AGG	p.R121R	MRPL4_uc002mnn.2_Silent_p.R121R|MRPL4_uc002mno.2_Silent_p.R121R	NM_146387	NP_666499	Q9BYD3	RM04_HUMAN	mitochondrial ribosomal protein L4 isoform a	121					translation	mitochondrion|ribosome	structural constituent of ribosome			ovary(1)	1		Renal(1328;0.0112)	OV - Ovarian serous cystadenocarcinoma(20;1.39e-09)|Epithelial(33;1.99e-06)|all cancers(31;4.81e-06)	Lung(535;0.00705)		AGCCGAGGTGCGGGGCGGTGG	0.672													7	123					0.000442599	0.00445669	0.000442599	1	0
CARM1	10498	broad.mit.edu	37	19	11032116	11032116	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:11032116C>G	uc002mpz.2	+	15	1807	c.1681C>G	c.(1681-1683)CAA>GAA	p.Q561E	CARM1_uc010dxn.2_RNA|CARM1_uc002mqa.2_Intron	NM_199141	NP_954592	Q86X55	CARM1_HUMAN	coactivator-associated arginine	561	Transactivation domain (By similarity).				cellular lipid metabolic process|histone H3-R2 methylation|interspecies interaction between organisms|pathogenesis|positive regulation of fat cell differentiation|regulation of estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleoplasm	beta-catenin binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-R17 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein-arginine omega-N asymmetric methyltransferase activity|transcription regulatory region DNA binding				0						GGGGATTGTCCAAGGTAACGA	0.652													4	75					0	0	0.00024832	0	0
SMARCA4	6597	broad.mit.edu	37	19	11138481	11138481	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:11138481G>C	uc002mqf.3	+	24	3521	c.3237G>C	c.(3235-3237)TCG>TCC	p.S1079S	SMARCA4_uc010dxp.2_Silent_p.S1079S|SMARCA4_uc010dxo.2_Silent_p.S1079S|SMARCA4_uc002mqg.1_Silent_p.S1079S|SMARCA4_uc010dxq.2_Silent_p.S1079S|SMARCA4_uc010dxr.2_Silent_p.S1079S|SMARCA4_uc002mqj.3_Silent_p.S1079S|SMARCA4_uc010dxs.2_Silent_p.S1079S|SMARCA4_uc010dxt.1_Silent_p.S299S|SMARCA4_uc002mqh.3_Silent_p.S202S|SMARCA4_uc002mqi.1_Silent_p.S282S	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	1079					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(2)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				ACCGAGCCTCGGGTAAATTTG	0.537			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				5	129					0	0	8.12818e-05	0	0
RAB3D	9545	broad.mit.edu	37	19	11436242	11436242	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:11436242G>C	uc002mqy.2	-	5	730	c.492C>G	c.(490-492)GCC>GCG	p.A164A	TSPAN16_uc002mqv.1_Intron|RAB3D_uc002mqx.2_5'Flank	NM_004283	NP_004274	O95716	RAB3D_HUMAN	RAB3D, member RAS oncogene family	164					exocytosis|protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			ovary(2)	2						CCTTGGCACTGGCTTCAAAGA	0.443													4	184					0	0	0.000157383	0	0
ECSIT	51295	broad.mit.edu	37	19	11624031	11624031	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:11624031G>C	uc002msb.2	-	4	712	c.578C>G	c.(577-579)CCC>CGC	p.P193R	ECSIT_uc002msa.1_RNA|ECSIT_uc010dyc.1_Missense_Mutation_p.P193R|ECSIT_uc010dyd.2_Missense_Mutation_p.P193R|ECSIT_uc010xma.1_Intron	NM_016581	NP_057665	Q9BQ95	ECSIT_HUMAN	evolutionarily conserved signaling intermediate	193					innate immune response|regulation of oxidoreductase activity	mitochondrion	oxidoreductase activity, acting on NADH or NADPH|protein binding			ovary(1)	1						CTTGAGCATGGGGTAGCTTTT	0.582													4	82					0	0	0.00024832	0	0
ZNF763	284390	broad.mit.edu	37	19	12089744	12089744	+	Silent	SNP	G	C	C	rs139588567	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:12089744G>C	uc002msw.2	+	4	1160	c.1005G>C	c.(1003-1005)ACG>ACC	p.T335T	ZNF763_uc010xmf.1_Silent_p.T355T|ZNF763_uc002msv.2_Silent_p.T338T|ZNF763_uc010xmg.1_Silent_p.T213T	NM_001012753	NP_001012771	Q0D2J5	ZN763_HUMAN	zinc finger protein 763	335					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						GGAGTCACACGGGAGAGAAGC	0.418													4	137					0	0	0.00024832	0	0
ZNF844	284391	broad.mit.edu	37	19	12187394	12187394	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:12187394T>C	uc002mtb.2	+	4	1602	c.1459T>C	c.(1459-1461)TTT>CTT	p.F487L	ZNF844_uc010dym.1_Missense_Mutation_p.F330L	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	487					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCCTTCATTTTTTCCACTTCC	0.448													7	133					0	0	0.000442599	0	0
ZNF625	90589	broad.mit.edu	37	19	12256438	12256438	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:12256438G>T	uc002mth.2	-	4	945	c.595C>A	c.(595-597)CAT>AAT	p.H199N	ZNF20_uc002mtg.1_Intron|ZNF625_uc010dyn.1_RNA|ZNF625_uc010dyo.1_Missense_Mutation_p.H233N	NM_145233	NP_660276	Q96I27	ZN625_HUMAN	zinc finger protein 625	199	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTTATTTTATGTGCATGGAGG	0.428													6	177					0.000442599	0.00445669	0.000442599	1	0
ZNF443	10224	broad.mit.edu	37	19	12542218	12542218	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:12542218T>C	uc002mtu.2	-	4	966	c.768A>G	c.(766-768)AAA>AAG	p.K256K		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	256	C2H2-type 5.				induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						TAGAACACTGTTTACATTCAT	0.358													5	272					0	0	0.000274275	0	0
WDR83	84292	broad.mit.edu	37	19	12781387	12781388	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:12781387_12781388CG>AT	uc002mue.3	+	6	676_677	c.341_342CG>AT	c.(340-342)ACG>AAT	p.T114N	WDR83_uc002muc.2_RNA|C19orf56_uc002mud.2_5'Flank|WDR83_uc010dyw.2_Missense_Mutation_p.T114N	NM_001099737	NP_001093207	Q9BRX9	WDR83_HUMAN	mitogen-activated protein kinase organizer 1	114	WD 3.				nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|cytoplasm		p.T114T(1)		lung(1)|breast(1)	2						AAGGTGAACACGGTGCAGTTTA	0.564													6	263					0	0	6.4e-05	0	0
DHPS	1725	broad.mit.edu	37	19	12792466	12792466	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:12792466C>G	uc002muh.1	-	1	212	c.115G>C	c.(115-117)GGT>CGT	p.G39R	DHPS_uc002muf.1_5'Flank|DHPS_uc002mug.1_5'Flank|DHPS_uc002mui.1_Missense_Mutation_p.G39R|DHPS_uc002muj.1_Missense_Mutation_p.G39R|DHPS_uc002muk.1_RNA|DHPS_uc010xmn.1_RNA	NM_001930	NP_001921	P49366	DHYS_HUMAN	deoxyhypusine synthase isoform a	39					peptidyl-lysine modification to hypusine|positive regulation of cell proliferation|post-translational protein modification|spermidine catabolic process to deoxyhypusine, using deoxyhypusine synthase|translation	cytosol	deoxyhypusine synthase activity|protein binding			central_nervous_system(1)	1					Sulfadoxine(DB01299)	TAATTCACACCGCGGTTGAAG	0.657													4	45					0	0	3.59834e-05	0	0
NACC1	112939	broad.mit.edu	37	19	13246936	13246936	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:13246936C>G	uc002mwm.2	+	2	1083	c.915C>G	c.(913-915)ACC>ACG	p.T305T		NM_052876	NP_443108	Q96RE7	NACC1_HUMAN	transcriptional repressor NAC1	305					negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|protein homooligomerization|transcription, DNA-dependent	cytoplasm|nuclear body					0						ACATGTACACCATGTACAGCA	0.622													4	61					0	0	3.59834e-05	0	0
NANOS3	342977	broad.mit.edu	37	19	13991270	13991270	+	Missense_Mutation	SNP	G	C	C	rs138280579		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:13991270G>C	uc002mxj.3	+	2	645	c.532G>C	c.(532-534)GGG>CGG	p.G178R		NM_001098622	NP_001092092	P60323	NANO3_HUMAN	nanos homolog 3	159					anti-apoptosis|germ cell development|multicellular organismal development|oogenesis|regulation of cell cycle|regulation of translation|spermatogenesis	cytoplasmic mRNA processing body|nucleus|stress granule	RNA binding|zinc ion binding	p.G178R(1)		skin(1)	1			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			CAGAGGTGCCGGGAAGTCTGA	0.627											OREG0025300	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	63					0	0	3.59834e-05	0	0
CC2D1A	54862	broad.mit.edu	37	19	14034244	14034244	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:14034244C>G	uc002mxo.2	+	15	2039	c.1740C>G	c.(1738-1740)ACC>ACG	p.T580T	CC2D1A_uc002mxp.2_Silent_p.T580T|CC2D1A_uc010dzh.2_Silent_p.T149T|CC2D1A_uc002mxq.1_Silent_p.T225T	NM_017721	NP_060191	Q6P1N0	C2D1A_HUMAN	coiled-coil and C2 domain containing 1A	580					positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|plasma membrane	DNA binding|signal transducer activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.49e-23)			GTGAACTCACCAAGCTCATAC	0.672													4	97					0	0	0.00024832	0	0
IL27RA	9466	broad.mit.edu	37	19	14150683	14150683	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:14150683G>T	uc002mxx.2	+	4	918	c.495G>T	c.(493-495)CAG>CAT	p.Q165H		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	class I cytokine receptor precursor	165	Extracellular (Potential).|Fibronectin type-III 1.				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0						TGATCTGCCAGTTCCACTACC	0.607													6	126					0.000978159	0.00917326	0.000978159	1	0
OR7A10	390892	broad.mit.edu	37	19	14952072	14952072	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:14952072C>A	uc002mzx.1	-	1	618	c.618G>T	c.(616-618)CTG>CTT	p.L206L		NM_001005190	NP_001005190	O76100	OR7AA_HUMAN	olfactory receptor, family 7, subfamily A,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Ovarian(108;0.203)					GACCACCGCCCAGCAGCGCTA	0.448													6	109					0.000157383	0.00173811	0.000157383	1	0
CYP4F8	11283	broad.mit.edu	37	19	15726591	15726591	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:15726591G>T	uc002nbi.2	+	2	228	c.164G>T	c.(163-165)CGG>CTG	p.R55L	CYP4F8_uc010xoi.1_Missense_Mutation_p.R55L|CYP4F8_uc010xoj.1_Nonsense_Mutation_p.G17*	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	55					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						CCGCAGCCCCGGAAACAGAAC	0.642													5	83					0.000157383	0.00173811	0.000157383	1	0
RAB8A	4218	broad.mit.edu	37	19	16238834	16238834	+	Splice_Site	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:16238834A>G	uc002ndn.3	+	6	637	c.415_splice	c.e6-2	p.L139_splice	RAB8A_uc010xpc.1_Splice_Site_p.L139_splice|RAB8A_uc002ndo.3_Silent_p.T16T	NM_005370	NP_005361	P61006	RAB8A_HUMAN	mel transforming oncogene						cilium assembly|Golgi vesicle fusion to target membrane|protein transport|small GTPase mediated signal transduction|vesicle docking involved in exocytosis	Golgi apparatus|nonmotile primary cilium|perinuclear region of cytoplasm|plasma membrane	GTP binding|protein binding			skin(1)	1						CCTCTCTCACAGCTGGCCCTC	0.612													4	58					0	0	0.00024832	0	0
CPAMD8	27151	broad.mit.edu	37	19	17039886	17039886	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:17039886C>G	uc002nfb.2	-	24	3183	c.3151G>C	c.(3151-3153)GGG>CGG	p.G1051R		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1004						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TTCTGATGCCCCCCCAGGACG	0.592													4	38					0	0	0.00024832	0	0
CPAMD8	27151	broad.mit.edu	37	19	17120125	17120125	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:17120125T>C	uc002nfb.2	-	6	665	c.633A>G	c.(631-633)GAA>GAG	p.E211E		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	164						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GGATGTAGGCTTCCAGCTGTA	0.562													6	78					0	0	0.000157383	0	0
MYO9B	4650	broad.mit.edu	37	19	17213064	17213064	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:17213064G>T	uc010eak.2	+	2	689	c.537G>T	c.(535-537)GCG>GCT	p.A179A	MYO9B_uc002nfi.2_Silent_p.A179A|MYO9B_uc002nfj.1_Silent_p.A179A	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	179	Myosin head-like.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						ACACGTACGCGGGGAGCATCC	0.547													5	137					0.000157383	0.00173811	0.000157383	1	0
IL12RB1	3594	broad.mit.edu	37	19	18191769	18191769	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:18191769G>A	uc002nhw.1	-	4	346	c.282C>T	c.(280-282)GCC>GCT	p.A94A	IL12RB1_uc010xqb.1_Silent_p.A94A|IL12RB1_uc002nhx.1_Silent_p.A134A|IL12RB1_uc002nhy.2_Silent_p.A94A	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	94	Extracellular (Potential).|Fibronectin type-III 1.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						GCAGCCTGGTGGCTGAGCCGG	0.637													6	69					0	0	3.59834e-05	0	0
PDE4C	5143	broad.mit.edu	37	19	18330174	18330174	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:18330174G>T	uc010xqc.1	-	8	1316	c.836C>A	c.(835-837)ACC>AAC	p.T279N	PDE4C_uc002nik.3_Missense_Mutation_p.T279N|PDE4C_uc002nil.3_Missense_Mutation_p.T279N|PDE4C_uc002nif.3_Missense_Mutation_p.T48N|PDE4C_uc002nig.3_Missense_Mutation_p.T49N|PDE4C_uc002nih.3_Missense_Mutation_p.T49N|PDE4C_uc010ebk.2_Missense_Mutation_p.T173N|PDE4C_uc002nii.3_Missense_Mutation_p.T247N|PDE4C_uc010ebl.2_5'UTR|PDE4C_uc010xqd.1_Missense_Mutation_p.T48N	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	279					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	CTCCTCAGCGGTCACCTTGGG	0.652													4	54					3.59834e-05	0.000429	3.59834e-05	1	0
SF4	57794	broad.mit.edu	37	19	19414542	19414542	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:19414542G>C	uc002nmh.2	-	5	655	c.653C>G	c.(652-654)CCA>CGA	p.P218R	SF4_uc002nmf.2_5'Flank|SF4_uc002nmg.2_5'UTR|SF4_uc002nmi.2_Missense_Mutation_p.P8R|SF4_uc002nmj.2_Missense_Mutation_p.P8R|SF4_uc010xqr.1_RNA|SF4_uc010xqs.1_Intron	NM_172231	NP_757386	Q8IWZ8	SUGP1_HUMAN	splicing factor 4	218	SURP motif 1.				nuclear mRNA splicing, via spliceosome	nucleoplasm|spliceosomal complex	RNA binding				0						CGCAAATGCTGGGTTATCCTT	0.552													5	200					0	0	8.12818e-05	0	0
ZNF429	353088	broad.mit.edu	37	19	21719141	21719141	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:21719141C>T	uc002nqd.1	+	4	423	c.286C>T	c.(286-288)CAA>TAA	p.Q96*	ZNF429_uc010ecu.1_Intron	NM_001001415	NP_001001415	Q86V71	ZN429_HUMAN	zinc finger protein 429	96					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						AGATTCTTTCCAAAAAGTGAC	0.328													21	127					0	0	0.000295444	0	0
ZNF675	171392	broad.mit.edu	37	19	23836434	23836434	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:23836434T>C	uc002nri.2	-	4	1483	c.1301A>G	c.(1300-1302)AAC>AGC	p.N434S		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	434	C2H2-type 11.				bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TGAGGATCGGTTAAAAGCTTT	0.378													4	139					0	0	0.000157383	0	0
ZNF675	171392	broad.mit.edu	37	19	23836475	23836475	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:23836475T>C	uc002nri.2	-	4	1442	c.1260A>G	c.(1258-1260)GGA>GGG	p.G420G		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	420					bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				AGGGTTTCTCTCCAGTGTGAA	0.373													4	125					0	0	0.00024832	0	0
ZNF254	9534	broad.mit.edu	37	19	24288801	24288801	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:24288801G>C	uc002nru.2	+	2	224	c.90G>C	c.(88-90)CTG>CTC	p.L30L	ZNF254_uc010xrk.1_Intron|ZNF254_uc002nrt.1_RNA	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	30	KRAB.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				GGCAACACCTGGACATTGCAC	0.408													4	183					0	0	3.59834e-05	0	0
ZNF254	9534	broad.mit.edu	37	19	24309885	24309885	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:24309885G>A	uc002nru.2	+	4	1217	c.1083G>A	c.(1081-1083)CAG>CAA	p.Q361Q	ZNF254_uc010xrk.1_Silent_p.Q276Q	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	361	C2H2-type 6.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				CTTTTAGCCAGTCCTCAACCC	0.393													5	115					0	0	0.000602214	0	0
ZNF254	9534	broad.mit.edu	37	19	24310185	24310186	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:24310185_24310186CT>TC	uc002nru.2	+	4	1517_1518	c.1383_1384CT>TC	c.(1381-1386)CCCTAC>CCTCAC	p.Y462H	ZNF254_uc010xrk.1_Missense_Mutation_p.Y377H	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	462	C2H2-type 10.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				GAGAGAAACCCTACAAATGTGA	0.396													9	64					0	0	6.4e-05	0	0
ZNF254	9534	broad.mit.edu	37	19	24310294	24310294	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:24310294T>G	uc002nru.2	+	4	1626	c.1492T>G	c.(1492-1494)TCT>GCT	p.S498A	ZNF254_uc010xrk.1_Missense_Mutation_p.S413A	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	498	C2H2-type 11.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				ATGTGGCAAATCTTTTAGCCA	0.408													4	86					0	0	0.00024832	0	0
DPY19L3	147991	broad.mit.edu	37	19	32954820	32954821	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:32954820_32954821CG>AT	uc002ntg.2	+	14	1667_1668	c.1491_1492CG>AT	c.(1489-1494)TTCGGC>TTATGC	p.497_498FG>LC	DPY19L3_uc002nth.1_Missense_Mutation_p.497_498FG>LC|DPY19L3_uc002nti.1_RNA	NM_207325	NP_997208	Q6ZPD9	D19L3_HUMAN	dpy-19-like 3	497_498	Helical; (Potential).					integral to membrane				ovary(4)	4	Esophageal squamous(110;0.162)					TCGCATCATTCGGCCTATGTAG	0.436													7	173					0	0	6.4e-05	0	0
GPATCH1	55094	broad.mit.edu	37	19	33587157	33587157	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:33587157C>A	uc002nug.1	+	7	971	c.657C>A	c.(655-657)CCC>CCA	p.P219P		NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	219						catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					CCTTTGCACCCAAAGATGTCA	0.458													9	118					0.000673444	0.00655963	0.000673444	1	0
WTIP	126374	broad.mit.edu	37	19	34984430	34984430	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:34984430G>A	uc002nvm.2	+	5	934	c.934G>A	c.(934-936)GGC>AGC	p.G312S		NM_001080436	NP_001073905			Wilms tumor 1 interacting protein												0	all_lung(56;5.94e-07)|Lung NSC(56;9.35e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			CTACCACCCAGGCTGCTTCCG	0.647													4	48					0	0	0.00024832	0	0
ZNF181	339318	broad.mit.edu	37	19	35231583	35231584	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:35231583_35231584CC>AA	uc002nvu.3	+	4	760_761	c.297_298CC>AA	c.(295-300)CCCCAA>CCAAAA	p.Q100K	ZNF181_uc010xsa.1_Missense_Mutation_p.Q99K|ZNF181_uc010xsb.1_Missense_Mutation_p.Q99K|ZNF181_uc010xsc.1_Missense_Mutation_p.Q35K	NM_001029997	NP_001025168	Q2M3W8	ZN181_HUMAN	zinc finger protein 181 isoform 1	100					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			AAGATTCACCCCAAACAGTAAT	0.302													10	154					0	0	6.4e-05	0	0
GAPDHS	26330	broad.mit.edu	37	19	36035822	36035822	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:36035822G>T	uc002oaf.1	+	10	1184	c.1068G>T	c.(1066-1068)ACG>ACT	p.T356T	uc010eec.1_RNA|uc002oag.2_Intron|TMEM147_uc002oai.1_5'Flank|TMEM147_uc002oaj.1_5'Flank|TMEM147_uc002oak.1_5'Flank	NM_014364	NP_055179	O14556	G3PT_HUMAN	glyceraldehyde-3-phosphate dehydrogenase,	356					gluconeogenesis|glycolysis|positive regulation of glycolysis|sperm motility	cytosol	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity|NAD binding|protein binding				0	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		NADH(DB00157)	TCGTCTCTACGGACTTCCTCG	0.522													6	73					1.12685e-05	0.000138146	0.000274275	1	0
ATP4A	495	broad.mit.edu	37	19	36054128	36054128	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:36054128G>T	uc002oal.1	-	3	228	c.199C>A	c.(199-201)CAG>AAG	p.Q67K		NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	67	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	GCACTGGTCTGGTATTTCTGT	0.483													8	200					0.000673444	0.00655963	0.000673444	1	0
C19orf46	163183	broad.mit.edu	37	19	36499142	36499142	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:36499142G>C	uc002ocq.1	-	2	345	c.256C>G	c.(256-258)CCA>GCA	p.P86A	C19orf46_uc002ocr.1_Missense_Mutation_p.P86A|C19orf46_uc002ocs.1_Missense_Mutation_p.P86A|C19orf46_uc010een.1_Intron	NM_001039876	NP_001034965	Q8N205	SYNE4_HUMAN	hypothetical protein LOC163183	86	Cytoplasmic (Potential).				establishment of epithelial cell apical/basal polarity	integral to nuclear outer membrane	actin binding			ovary(1)	1	all_lung(56;1.35e-06)|Lung NSC(56;2.15e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			CCCCCAGCTGGGTCCTCGTAG	0.642													3	33					0	0	6.4e-05	0	0
ZNF565	147929	broad.mit.edu	37	19	36674631	36674631	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:36674631C>A	uc002odn.2	-	5	345	c.237G>T	c.(235-237)TTG>TTT	p.L79F	ZNF565_uc010ees.2_Missense_Mutation_p.L14F|ZNF565_uc002odo.2_Missense_Mutation_p.L79F	NM_152477	NP_689690	Q8N9K5	ZN565_HUMAN	zinc finger protein 565	79					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.206)			ACCTGGACTCCAAGTCTGAAA	0.313													7	148					8.12818e-05	0.000938396	8.12818e-05	1	0
ZNF146	7705	broad.mit.edu	37	19	36727855	36727855	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:36727855C>A	uc002odq.3	+	4	2036	c.513C>A	c.(511-513)CTC>CTA	p.L171L	ZNF146_uc010eet.2_Silent_p.L171L|ZNF146_uc010eeu.2_Silent_p.L171L	NM_007145	NP_009076	Q15072	OZF_HUMAN	zinc finger protein 146	171	C2H2-type 6.				regulation of transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|heparin binding|zinc ion binding				0	Esophageal squamous(110;0.162)					AGAAGTACCTCATAAAACATC	0.408													7	149					0.000442599	0.00445669	0.000442599	1	0
ZNF566	84924	broad.mit.edu	37	19	36940499	36940499	+	Silent	SNP	T	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:36940499T>G	uc002oea.3	-	5	719	c.637A>C	c.(637-639)AGA>CGA	p.R213R	ZNF566_uc010xte.1_Silent_p.R213R|ZNF566_uc010xtf.1_Silent_p.R214R|ZNF566_uc002oeb.3_Silent_p.R213R|ZNF566_uc002oec.3_Silent_p.R109R|ZNF566_uc010xtg.1_Silent_p.R109R	NM_032838	NP_116227	Q969W8	ZN566_HUMAN	zinc finger protein 566 isoform 1	213	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					TGAGTGAGTCTTGAGGGATGT	0.388													4	141					0	0	0.00024832	0	0
ZNF382	84911	broad.mit.edu	37	19	37117341	37117341	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:37117341C>G	uc002oek.2	+	5	655	c.542C>G	c.(541-543)CCT>CGT	p.P181R	ZNF382_uc010efa.2_Missense_Mutation_p.P132R|ZNF382_uc010efb.2_Missense_Mutation_p.P180R|ZNF382_uc002oel.2_Missense_Mutation_p.P180R	NM_032825	NP_116214	Q96SR6	ZN382_HUMAN	zinc finger protein 382	181	Represses transcription (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			AAAATTCATCCTGCAGTGAAT	0.403													5	144					0	0	8.12818e-05	0	0
ZNF345	25850	broad.mit.edu	37	19	37369059	37369059	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:37369059C>G	uc002oex.2	+	3	1705	c.1327C>G	c.(1327-1329)CAG>GAG	p.Q443E	ZNF345_uc002oey.3_Missense_Mutation_p.Q443E|ZNF345_uc002oez.2_Intron	NM_003419	NP_003410	Q14585	ZN345_HUMAN	zinc finger protein 345	443	C2H2-type 14.				negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AAGCCTTACTCAGCATCAGAG	0.423													4	148					0	0	3.59834e-05	0	0
ZNF781	163115	broad.mit.edu	37	19	38160477	38160477	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:38160477G>T	uc002ogy.2	-	4	1315	c.573C>A	c.(571-573)ACC>ACA	p.T191T	ZNF781_uc002ogz.2_Silent_p.T186T	NM_152605	NP_689818	Q8N8C0	ZN781_HUMAN	zinc finger protein 781	191					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGAGTTCTCTGGTGTTGAGTA	0.363													7	150					0.000442599	0.00445669	0.000442599	1	0
RYR1	6261	broad.mit.edu	37	19	39008294	39008294	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:39008294G>T	uc002oit.2	+	66	10111	c.9981G>T	c.(9979-9981)CTG>CTT	p.L3327L	RYR1_uc002oiu.2_Silent_p.L3327L|RYR1_uc002oiv.1_Silent_p.L247L|RYR1_uc010xuf.1_Silent_p.L247L	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3327					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TCAACAACCTGGGCATTGACG	0.667													6	69					0.000274275	0.00290969	0.000274275	1	0
FCGBP	8857	broad.mit.edu	37	19	40384061	40384061	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:40384061G>C	uc002omp.3	-	21	9557	c.9549C>G	c.(9547-9549)CCC>CCG	p.P3183P		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	3183	TIL 7.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CCTCCACACAGGGGCCCTCAC	0.652													4	104					0	0	0.00024832	0	0
ZNF780A	284323	broad.mit.edu	37	19	40581109	40581109	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:40581109T>C	uc002omy.2	-	6	1465	c.1240A>G	c.(1240-1242)ATA>GTA	p.I414V	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Missense_Mutation_p.I414V|ZNF780A_uc010xvh.1_Missense_Mutation_p.I415V	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	414					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TATGGTTTTATACCAGCATGA	0.383													4	223					0	0	0.000602214	0	0
MAP3K10	4294	broad.mit.edu	37	19	40711082	40711082	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:40711082G>C	uc002ona.2	+	4	1355	c.1067G>C	c.(1066-1068)CGG>CCG	p.R356P	MAP3K10_uc002onb.2_5'UTR	NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	356	Protein kinase.				activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						ATCTTGAAGCGGCTTGAAGTC	0.577													4	89					0	0	0.00024832	0	0
MAP3K10	4294	broad.mit.edu	37	19	40715033	40715033	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:40715033C>G	uc002ona.2	+	6	1747	c.1459C>G	c.(1459-1461)CAG>GAG	p.Q487E	MAP3K10_uc002onb.2_5'UTR	NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	487					activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						GATCACAGTCCAGGCCTCTCC	0.527													4	177					0	0	3.59834e-05	0	0
AKT2	208	broad.mit.edu	37	19	40745986	40745986	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:40745986C>G	uc002onf.2	-	7	867	c.605G>C	c.(604-606)CGG>CCG	p.R202P	AKT2_uc010egs.2_Missense_Mutation_p.R202P|AKT2_uc010egt.2_Missense_Mutation_p.R140P|AKT2_uc010xvj.1_Missense_Mutation_p.R140P|AKT2_uc010egu.1_Missense_Mutation_p.R140P|AKT2_uc010xvk.1_Missense_Mutation_p.R202P|AKT2_uc002one.2_Missense_Mutation_p.R98P	NM_001626	NP_001617	P31751	AKT2_HUMAN	AKT2 kinase	202	Protein kinase.				insulin receptor signaling pathway|negative regulation of plasma membrane long-chain fatty acid transport|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2			Lung(22;0.000499)			CTGGAGGACCCGGCTCTCGGT	0.637			A		ovarian|pancreatic 								5	155					0	0	0.000442599	0	0
PRX	57716	broad.mit.edu	37	19	40900148	40900148	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:40900148G>A	uc002onr.2	-	7	4380	c.4111C>T	c.(4111-4113)CGG>TGG	p.R1371W	PRX_uc002onq.2_Missense_Mutation_p.R1232W|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	1371					axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			ACCCGGCCCCGGCGACCCGAG	0.612													5	33					0	0	3.59834e-05	0	0
SPTBN4	57731	broad.mit.edu	37	19	41012159	41012159	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:41012159G>C	uc002ony.2	+	13	1768	c.1682G>C	c.(1681-1683)CGG>CCG	p.R561P	SPTBN4_uc002onx.2_Missense_Mutation_p.R561P|SPTBN4_uc002onz.2_Missense_Mutation_p.R561P	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	561	Spectrin 4.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CTGCTGTCCCGGGAGTGTGGG	0.657													4	89					0	0	0.00024832	0	0
LTBP4	8425	broad.mit.edu	37	19	41128898	41128898	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:41128898G>T	uc002ooh.1	+	28	3729	c.3729G>T	c.(3727-3729)GCG>GCT	p.A1243A	LTBP4_uc002oog.1_Silent_p.A1206A|LTBP4_uc002ooi.1_Silent_p.A1176A|LTBP4_uc002ooj.1_Silent_p.A116A|LTBP4_uc002ook.1_Silent_p.A377A|LTBP4_uc002ool.1_Silent_p.A255A|LTBP4_uc010xvp.1_Intron	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	1243					growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GCTACCTGGCGCCCAGTGGAG	0.577													4	26					0.000157383	0.00173811	0.000157383	1	0
CYP2A6	1548	broad.mit.edu	37	19	41351345	41351345	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:41351345G>C	uc002opl.3	-	7	1036	c.1015C>G	c.(1015-1017)CGG>GGG	p.R339G	CYP2A6_uc010ehe.1_Missense_Mutation_p.R135G	NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	339					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	TTGGGCTGCCGGTTCTTGCCG	0.547													4	87					0	0	0.000602214	0	0
AXL	558	broad.mit.edu	37	19	41758839	41758839	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:41758839C>T	uc010ehj.2	+	16	2083	c.1893C>T	c.(1891-1893)TTC>TTT	p.F631F	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehk.2_Silent_p.F622F	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	631	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						TACACAGCTTCCTCCTCTATT	0.408													6	123					0	0	0.000157383	0	0
CEACAM5	1048	broad.mit.edu	37	19	42224968	42224968	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:42224968C>G	uc002ork.2	+	8	2019	c.1898C>G	c.(1897-1899)CCG>CGG	p.P633R	CEACAM5_uc002orj.1_Missense_Mutation_p.P632R|CEACAM5_uc002orl.2_Missense_Mutation_p.P633R	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	633	Ig-like 7.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		AATGGGATACCGCAGCAACAC	0.507													4	143					0	0	0.000157383	0	0
MEGF8	1954	broad.mit.edu	37	19	42858806	42858806	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:42858806C>G	uc002otl.3	+	22	4512	c.3877C>G	c.(3877-3879)CGC>GGC	p.R1293G	MEGF8_uc002otm.3_Missense_Mutation_p.R901G	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	1360	Extracellular (Potential).|CUB 2.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				CCAGTCGGACCGCAGCCTCAT	0.602													4	163					0	0	8.12818e-05	0	0
MEGF8	1954	broad.mit.edu	37	19	42867352	42867352	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:42867352C>G	uc002otl.3	+	34	6645	c.6010C>G	c.(6010-6012)CTG>GTG	p.L2004V	MEGF8_uc002otm.3_Missense_Mutation_p.L1612V	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	2071	Extracellular (Potential).|PSI 6.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				TACCTCCTGCCTGGACTCTAA	0.637													3	18					0	0	3.59834e-05	0	0
PSG3	5671	broad.mit.edu	37	19	43237057	43237057	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:43237057G>T	uc002oue.2	-	3	720	c.588C>A	c.(586-588)TCC>TCA	p.S196S	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Silent_p.S218S	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	196	Ig-like C2-type 1.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TTTTGTTTTTGGACAACTGCA	0.507													6	183					1.58986e-06	2.00859e-05	0.000673444	1	0
PSG3	5671	broad.mit.edu	37	19	43237123	43237123	+	Silent	SNP	C	G	G	rs144410961	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:43237123C>G	uc002oue.2	-	3	654	c.522G>C	c.(520-522)CCG>CCC	p.P174P	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Silent_p.P196P	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	174	Ig-like C2-type 1.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				AGCTTGCGTCCGGAGTCTCAG	0.522													4	200					0	0	0.00024832	0	0
PSG1	5669	broad.mit.edu	37	19	43373161	43373161	+	Silent	SNP	G	C	C	rs2883092		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:43373161G>C	uc002ovb.2	-	4	873	c.735C>G	c.(733-735)ACC>ACG	p.T245T	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Silent_p.T245T|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Silent_p.T245T|PSG1_uc010eio.1_Silent_p.T245T|PSG1_uc002oux.1_Silent_p.T174T|PSG1_uc002ouy.1_Intron|PSG1_uc002ouz.1_Silent_p.T245T|PSG1_uc002ova.1_Silent_p.T152T|PSG1_uc002ovc.2_Silent_p.T152T|PSG1_uc002ovd.1_Silent_p.T245T	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	245	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				AGTTGTTGATGGTGATGTAGG	0.453													4	147					0	0	8.12818e-05	0	0
PSG11	5680	broad.mit.edu	37	19	43523056	43523056	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:43523056C>G	uc002ovm.1	-	3	682	c.575G>C	c.(574-576)AGG>ACG	p.R192T	PSG11_uc002ouw.2_Missense_Mutation_p.R198T|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Missense_Mutation_p.R198T|PSG11_uc002ovn.1_Missense_Mutation_p.R198T|PSG11_uc002ovo.1_Missense_Mutation_p.R70T|PSG11_uc002ovp.1_Missense_Mutation_p.R70T	NM_002785	NP_002776	Q9UQ72	PSG11_HUMAN	pregnancy specific beta-1-glycoprotein 11	192	Ig-like C2-type 1.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				CAGCTGCATCCTATGAGTCAT	0.493													4	239					0	0	3.59834e-05	0	0
PSG4	5672	broad.mit.edu	37	19	43697537	43697537	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:43697537C>G	uc002ovy.2	-	6	1349	c.1247G>C	c.(1246-1248)TGG>TCG	p.W416S	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.W323S|PSG4_uc002ovz.2_Missense_Mutation_p.W323S	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	416					defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				gggtaatatccagtctacagg	0													4	84					0	0	0.000157383	0	0
IRGQ	126298	broad.mit.edu	37	19	44097003	44097004	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:44097003_44097004GG>TT	uc002oww.2	-	2	1164_1165	c.1046_1047CC>AA	c.(1045-1047)CCC>CAA	p.P349Q	IRGQ_uc010eiv.2_Missense_Mutation_p.P349Q	NM_001007561	NP_001007562	Q8WZA9	IRGQ_HUMAN	immunity-related GTPase family, Q	349							protein binding			ovary(1)|pancreas(1)	2		Prostate(69;0.0199)				TCTCGCCCTTGGGATTCTCCAT	0.589													8	195					0	0	6.4e-05	0	0
ZFP112	7771	broad.mit.edu	37	19	44832110	44832110	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:44832110G>T	uc010ejj.2	-	5	2331	c.2218C>A	c.(2218-2220)CAG>AAG	p.Q740K	ZFP112_uc002ozc.3_Missense_Mutation_p.Q734K|ZFP112_uc010xwy.1_Missense_Mutation_p.Q757K|ZFP112_uc010xwz.1_Missense_Mutation_p.Q739K	NM_001083335	NP_001076804	Q9UJU3	ZF112_HUMAN	zinc finger protein 228 isoform 1	740	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)	5						TGGACTCTCTGATGACCTTGA	0.463													7	141					0.000442599	0.00445669	0.000442599	1	0
CEACAM20	125931	broad.mit.edu	37	19	45028102	45028102	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:45028102C>G	uc010ejn.1	-	3	405	c.389G>C	c.(388-390)CGG>CCG	p.R130P	CEACAM20_uc010ejo.1_Missense_Mutation_p.R130P|CEACAM20_uc010ejp.1_Missense_Mutation_p.R130P|CEACAM20_uc010ejq.1_Missense_Mutation_p.R130P	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	130	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				TGAGTCCTCCCGCTGGACAAT	0.527													4	290					0	0	3.59834e-05	0	0
CEACAM16	388551	broad.mit.edu	37	19	45206701	45206701	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:45206701C>T	uc010xxd.1	+	3	326	c.120C>T	c.(118-120)GTC>GTT	p.V40V	CEACAM16_uc002ozq.2_Silent_p.V99V	NM_001039213	NP_001034302	A7LI12	A7LI12_HUMAN	carcinoembryonic antigen-related cell adhesion	40										ovary(1)	1	Lung NSC(12;0.000698)|all_lung(12;0.002)	Prostate(69;0.0376)|Ovarian(192;0.231)				TCACGCTGGTCGTCCATGGGC	0.622													16	169					0	0	0.000422831	0	0
PVRL2	5819	broad.mit.edu	37	19	45391407	45391407	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:45391407G>C	uc002ozw.1	+	9	1778	c.1388G>C	c.(1387-1389)CGG>CCG	p.R463P		NM_001042724	NP_001036189	Q92692	PVRL2_HUMAN	poliovirus receptor related 2 isoform delta	463	Cytoplasmic (Potential).				adherens junction organization|adhesion to symbiont|cell junction assembly|homophilic cell adhesion|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity|viral envelope fusion with host membrane|virion attachment, binding of host cell surface coreceptor	cell surface|integral to membrane|zonula adherens	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0	Lung NSC(12;0.00195)|all_lung(12;0.00522)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0143)		TTGGAAGAACGGTCAGGACCC	0.562													5	266					0	0	0.000157383	0	0
APOC4	346	broad.mit.edu	37	19	45448477	45448477	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:45448477G>T	uc002pag.1	+	3	339	c.299G>T	c.(298-300)TGG>TTG	p.W100L	APOC2_uc002pah.2_5'Flank	NM_001646	NP_001637	P55056	APOC4_HUMAN	apolipoprotein C-IV precursor	100					lipid metabolic process|positive regulation of sequestering of triglyceride|triglyceride homeostasis	high-density lipoprotein particle|very-low-density lipoprotein particle	lipid transporter activity			breast(1)	1	Lung NSC(12;0.00858)|all_lung(12;0.0197)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00334)|Epithelial(262;0.178)		ACCAAGGCCTGGTTCCTCGAA	0.552													9	266					0.000673444	0.00655963	0.000673444	1	0
CLPTM1	1209	broad.mit.edu	37	19	45495627	45495627	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:45495627C>G	uc002pai.2	+	13	1707	c.1692C>G	c.(1690-1692)CCC>CCG	p.P564P	CLPTM1_uc010xxf.1_Silent_p.P462P|CLPTM1_uc010xxg.1_Silent_p.P550P	NM_001294	NP_001285	O96005	CLPT1_HUMAN	cleft lip and palate associated transmembrane	564	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|regulation of T cell differentiation in thymus	external side of plasma membrane|integral to plasma membrane				ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00354)|Epithelial(262;0.187)		TCAAGATGCCCGTTATGTACC	0.622													5	322					0	0	8.12818e-05	0	0
ZNF296	162979	broad.mit.edu	37	19	45575731	45575731	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:45575731G>T	uc002pao.2	-	3	613	c.556C>A	c.(556-558)CAG>AAG	p.Q186K		NM_145288	NP_660331	Q8WUU4	ZN296_HUMAN	zinc finger protein 296	186					regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GATTCTGTCTGGTAGATGGAC	0.672													8	204					0.000442599	0.00445669	0.000442599	1	0
ZNF296	162979	broad.mit.edu	37	19	45579557	45579557	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:45579557C>G	uc002pao.2	-	1	132	c.75G>C	c.(73-75)ATG>ATC	p.M25I	GEMIN7_uc002pap.1_5'Flank|GEMIN7_uc002paq.1_5'Flank|GEMIN7_uc002par.1_5'Flank	NM_145288	NP_660331	Q8WUU4	ZN296_HUMAN	zinc finger protein 296	25					regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCTGCATTTCCATCTCGTCGT	0.627													4	147					0	0	0.00024832	0	0
VASP	7408	broad.mit.edu	37	19	46021212	46021212	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:46021212G>C	uc002pcg.2	+	3	545	c.203G>C	c.(202-204)CGG>CCG	p.R68P	VASP_uc010eki.2_Missense_Mutation_p.G52R|VASP_uc002pci.2_Missense_Mutation_p.R55P	NM_003370	NP_003361	P50552	VASP_HUMAN	vasodilator-stimulated phosphoprotein	68	WH1.				axon guidance|cell junction assembly|T cell receptor signaling pathway	actin cytoskeleton|cytosol|filopodium membrane|focal adhesion|lamellipodium membrane	actin binding|profilin binding|SH3 domain binding				0		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0145)|GBM - Glioblastoma multiforme(486;0.154)		GCCATCGTCCGGGGTGTCAAG	0.458													3	21					0	0	0.000602214	0	0
DACT3	147906	broad.mit.edu	37	19	47151769	47151769	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:47151769C>A	uc010ekq.2	-	4	1934	c.1860G>T	c.(1858-1860)TCG>TCT	p.S620S		NM_145056	NP_659493	Q96B18	DACT3_HUMAN	thymus expressed gene 3-like	620											0		Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000173)|all cancers(93;0.000464)|Epithelial(262;0.02)|GBM - Glioblastoma multiforme(486;0.0325)		TGAGAGAACCCGAACGGAAAC	0.577													11	244					1.3612e-06	1.73233e-05	0.000308642	1	0
DHX34	9704	broad.mit.edu	37	19	47876076	47876076	+	Missense_Mutation	SNP	C	G	G	rs140955733		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:47876076C>G	uc010xyn.1	+	8	2199	c.1858C>G	c.(1858-1860)CGC>GGC	p.R620G	DHX34_uc010elc.1_Missense_Mutation_p.R535G	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	620						intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		GCCCTTCACCCGCAGCGCCCA	0.667													4	31					0	0	8.12818e-05	0	0
PLA2G4C	8605	broad.mit.edu	37	19	48601398	48601398	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:48601398G>T	uc002phx.2	-	6	964	c.566C>A	c.(565-567)CCA>CAA	p.P189Q	PLA2G4C_uc002phw.2_Missense_Mutation_p.P124Q|PLA2G4C_uc010elr.2_Missense_Mutation_p.P189Q|PLA2G4C_uc010xzd.1_Missense_Mutation_p.P199Q|PLA2G4C_uc002phy.3_Missense_Mutation_p.P189Q	NM_003706	NP_003697	Q9UP65	PA24C_HUMAN	phospholipase A2, group IVC isoform 1 precursor	189	PLA2c.				arachidonic acid metabolic process|glycerophospholipid catabolic process|inflammatory response|intracellular signal transduction|parturition	cytosol|membrane	calcium-independent phospholipase A2 activity|phospholipid binding			ovary(1)|skin(1)	2		all_cancers(25;2.84e-05)|all_lung(116;4.62e-05)|Lung NSC(112;7.61e-05)|all_epithelial(76;0.000192)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;8.09e-05)|all cancers(93;0.000517)|Epithelial(262;0.0135)|GBM - Glioblastoma multiforme(486;0.0717)		TTGCTTACCTGGTGCTCTTGC	0.527													7	161					0.000673444	0.00655963	0.000673444	1	0
ZNF114	163071	broad.mit.edu	37	19	48789587	48789587	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:48789587C>T	uc002pil.1	+	6	1203	c.706C>T	c.(706-708)CTT>TTT	p.L236F	ZNF114_uc010elv.1_Missense_Mutation_p.L236F|ZNF114_uc002pim.1_Missense_Mutation_p.L236F|ZNF114_uc002pin.2_Missense_Mutation_p.L202F	NM_153608	NP_705836	Q8NC26	ZN114_HUMAN	zinc finger protein 114	236					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_epithelial(76;8.01e-05)|all_lung(116;0.000112)|Lung NSC(112;0.000192)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;7.56e-05)|all cancers(93;0.000113)|Epithelial(262;0.00962)|GBM - Glioblastoma multiforme(486;0.0153)		AGACGGATCCCTTAGGGCACA	0.463													20	104					0	0	0.000132079	0	0
SPHK2	56848	broad.mit.edu	37	19	49132520	49132520	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:49132520C>G	uc002pjr.2	+	7	1821	c.1455C>G	c.(1453-1455)CCC>CCG	p.P485P	SPHK2_uc010xzt.1_Silent_p.P426P|SPHK2_uc002pjs.2_Silent_p.P485P|SPHK2_uc002pjt.2_Silent_p.P279P|SPHK2_uc002pju.2_Intron|SPHK2_uc002pjv.2_Silent_p.P449P|SPHK2_uc002pjw.2_Silent_p.P547P	NM_020126	NP_064511	Q9NRA0	SPHK2_HUMAN	sphingosine kinase 2	485					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|cell proliferation|sphinganine-1-phosphate biosynthetic process	cytosol|lysosomal membrane|membrane fraction	ATP binding|D-erythro-sphingosine kinase activity|diacylglycerol kinase activity|Ras GTPase binding|sphinganine kinase activity			lung(1)	1		all_lung(116;0.000125)|Lung NSC(112;0.000202)|all_epithelial(76;0.000283)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		TACACTCACCCGTCTCCGAAG	0.697													4	121					0	0	0.000157383	0	0
FGF21	26291	broad.mit.edu	37	19	49261218	49261218	+	Missense_Mutation	SNP	G	C	C	rs142980324		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:49261218G>C	uc002pkn.1	+	4	943	c.371G>C	c.(370-372)CGG>CCG	p.R124P	FUT1_uc002pkk.2_5'Flank|FUT1_uc002pkm.1_5'Flank|FGF21_uc002pko.1_Missense_Mutation_p.R124P	NM_019113	NP_061986	Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21 precursor	124					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		TGCAGCTTCCGGGAGCTGCTT	0.527													5	194					0	0	0.000274275	0	0
TRPM4	54795	broad.mit.edu	37	19	49693488	49693488	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:49693488G>C	uc002pmw.2	+	15	2115	c.2043G>C	c.(2041-2043)TGG>TGC	p.W681C	TRPM4_uc010emu.2_Missense_Mutation_p.W681C|TRPM4_uc010yak.1_Missense_Mutation_p.W145C|TRPM4_uc002pmx.2_Missense_Mutation_p.W507C|TRPM4_uc010emv.2_Missense_Mutation_p.W566C|TRPM4_uc010yal.1_Missense_Mutation_p.W327C|TRPM4_uc002pmy.2_Missense_Mutation_p.W23C	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	681	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		AGAAGTGGTGGGGAGATATGG	0.582													4	204					0	0	0.00024832	0	0
PIH1D1	55011	broad.mit.edu	37	19	49949860	49949860	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:49949860G>C	uc002pns.2	-	8	1063	c.779C>G	c.(778-780)CCG>CGG	p.P260R	uc002pnr.1_5'Flank	NM_017916	NP_060386	Q9NWS0	PIHD1_HUMAN	NOP17	260					box C/D snoRNP assembly	pre-snoRNP complex					0		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00152)|GBM - Glioblastoma multiforme(486;0.0244)		GATCTGCAGCGGGATATAAGC	0.632													4	113					0	0	3.59834e-05	0	0
ALDH16A1	126133	broad.mit.edu	37	19	49967768	49967768	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:49967768G>C	uc002pnt.2	+	11	1542	c.1426G>C	c.(1426-1428)GGG>CGG	p.G476R	ALDH16A1_uc010yar.1_Missense_Mutation_p.G425R|ALDH16A1_uc010yas.1_Missense_Mutation_p.G311R|ALDH16A1_uc010yat.1_Missense_Mutation_p.G313R	NM_153329	NP_699160	Q8IZ83	A16A1_HUMAN	aldehyde dehydrogenase 16 family, member A1	476							oxidoreductase activity|protein binding			skin(1)	1		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00156)|GBM - Glioblastoma multiforme(486;0.0251)		TTCCTGGCACGGGGGCCCAGA	0.687													3	47					0	0	6.4e-05	0	0
PRR12	57479	broad.mit.edu	37	19	50097748	50097748	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:50097748G>C	uc002poo.3	+	3	237	c.237G>C	c.(235-237)GCG>GCC	p.A79A		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	480	Pro-rich.						DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		TCCACCACGCGGGCTCAGCAG	0.657													5	106					0	0	0.000157383	0	0
CD33	945	broad.mit.edu	37	19	51738425	51738425	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:51738425C>T	uc002pwa.2	+	5	799	c.759C>T	c.(757-759)ACC>ACT	p.T253T	CD33_uc010eos.1_Silent_p.T253T|CD33_uc010eot.1_Silent_p.T126T|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	253	Extracellular (Potential).				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	AACAAGAGACCAGAGCAGGAG	0.483													5	92					0	0	3.59834e-05	0	0
C19orf75	284369	broad.mit.edu	37	19	51769092	51769092	+	Silent	SNP	G	C	C	rs74462590	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:51769092G>C	uc002pwb.1	+	4	747	c.366G>C	c.(364-366)GCG>GCC	p.A122A	C19orf75_uc010eov.1_RNA|C19orf75_uc010ycw.1_Silent_p.A28A	NM_173635	NP_775906	Q8N7X8	CS075_HUMAN	hypothetical protein LOC284369	122	Helical; (Potential).					integral to membrane				ovary(1)|pancreas(1)	2						CTATCTATGCGGGAATTGTAA	0.458													4	185					0	0	3.59834e-05	0	0
FPR3	2359	broad.mit.edu	37	19	52327550	52327550	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:52327550G>C	uc002pxt.1	+	2	733	c.549G>C	c.(547-549)TGG>TGC	p.W183C		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	183	Extracellular (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						TTGCATTCTGGGGTGACACTG	0.428													4	109					0	0	3.59834e-05	0	0
ZNF649	65251	broad.mit.edu	37	19	52394371	52394371	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:52394371G>C	uc002pxy.2	-	5	1286	c.1018C>G	c.(1018-1020)CAC>GAC	p.H340D	ZNF577_uc010ydf.1_5'Flank	NM_023074	NP_075562	Q9BS31	ZN649_HUMAN	zinc finger protein 649	340	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00152)|OV - Ovarian serous cystadenocarcinoma(262;0.0185)		TCTCCAGTGTGAGTTCGTTGA	0.453													4	105					0	0	3.59834e-05	0	0
ZNF615	284370	broad.mit.edu	37	19	52497229	52497229	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:52497229G>C	uc002pye.1	-	6	1392	c.1100C>G	c.(1099-1101)ACT>AGT	p.T367S	ZNF615_uc002pyf.1_Missense_Mutation_p.T378S|ZNF615_uc002pyg.1_Missense_Mutation_p.T259S|ZNF615_uc002pyh.1_Missense_Mutation_p.T378S|ZNF615_uc010epi.1_Missense_Mutation_p.T374S|ZNF615_uc010ydg.1_Missense_Mutation_p.T372S	NM_198480	NP_940882	Q8N8J6	ZN615_HUMAN	zinc finger protein 615	367					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00142)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		TTTCTCACCAGTATGAGTTCG	0.378													4	127					0	0	3.59834e-05	0	0
ZNF615	284370	broad.mit.edu	37	19	52497719	52497719	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:52497719G>T	uc002pye.1	-	6	902	c.610C>A	c.(610-612)CAT>AAT	p.H204N	ZNF615_uc002pyf.1_Missense_Mutation_p.H215N|ZNF615_uc002pyg.1_Missense_Mutation_p.H96N|ZNF615_uc002pyh.1_Missense_Mutation_p.H215N|ZNF615_uc010epi.1_Missense_Mutation_p.H211N|ZNF615_uc010ydg.1_Missense_Mutation_p.H209N	NM_198480	NP_940882	Q8N8J6	ZN615_HUMAN	zinc finger protein 615	204	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00142)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		CTGCATACATGGGCATTCTCT	0.373													9	203					1.5842e-08	2.08899e-07	0.000151284	1	0
ZNF480	147657	broad.mit.edu	37	19	52819203	52819203	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:52819203G>C	uc010ydl.1	+	4	386	c.316G>C	c.(316-318)GGT>CGT	p.G106R	ZNF480_uc002pyv.2_Missense_Mutation_p.G29R|ZNF480_uc010ydm.1_Intron|ZNF480_uc010epn.2_Intron|uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	106					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		GTGCATCAAAGGTGTGAACAC	0.383													4	68					0	0	0.000157383	0	0
ZNF600	162966	broad.mit.edu	37	19	53269254	53269254	+	Silent	SNP	C	G	G	rs150267340	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:53269254C>G	uc002qab.3	-	3	2041	c.1755G>C	c.(1753-1755)ACG>ACC	p.T585T		NM_198457	NP_940859	Q6ZNG1	ZN600_HUMAN	zinc finger protein 600	585	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0241)|GBM - Glioblastoma multiforme(134;0.0404)		TGTCACAAACCGTACATTTGT	0.428													4	227					0	0	0.00024832	0	0
ZNF468	90333	broad.mit.edu	37	19	53352429	53352429	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:53352429G>T	uc002qaf.2	-	3	204	c.53C>A	c.(52-54)TCT>TAT	p.S18Y	ZNF468_uc002qae.2_5'UTR	NM_001008801	NP_001008801	Q5VIY5	ZN468_HUMAN	zinc finger protein ZNF468 isoform 2	18	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0358)		CTCCTCCTGAGAGAATTCTAT	0.443													13	295					3.52763e-06	4.40851e-05	0.000566183	1	0
ZNF816A	125893	broad.mit.edu	37	19	53453116	53453116	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:53453116G>T	uc002qal.1	-	5	2213	c.1912C>A	c.(1912-1914)CAC>AAC	p.H638N	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Missense_Mutation_p.H622N	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	638	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		GCTTGATGGTGAATAAGTGTT	0.388													10	200					0.000978159	0.00917326	0.000978159	1	0
ZNF816A	125893	broad.mit.edu	37	19	53453885	53453885	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:53453885T>C	uc002qal.1	-	5	1444	c.1143A>G	c.(1141-1143)AAA>AAG	p.K381K	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Silent_p.K365K	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	381	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		GAAGGGATGATTTCTGACTGA	0.393													4	212					0	0	0.000602214	0	0
ZNF816A	125893	broad.mit.edu	37	19	53453890	53453890	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:53453890G>C	uc002qal.1	-	5	1439	c.1138C>G	c.(1138-1140)CAG>GAG	p.Q380E	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Missense_Mutation_p.Q364E	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	380	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		GATGATTTCTGACTGAAGGTC	0.398													4	211					0	0	0.000602214	0	0
ZNF702P	79986	broad.mit.edu	37	19	53472914	53472914	+	RNA	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:53472914A>G	uc002qan.3	-	4		c.1587T>C				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						TTTGATTTTCAATTAAAAACC	0.338													5	74					0	0	8.12818e-05	0	0
ZNF347	84671	broad.mit.edu	37	19	53644290	53644290	+	Silent	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:53644290A>G	uc002qbb.1	-	5	1860	c.1791T>C	c.(1789-1791)TAT>TAC	p.Y597Y	ZNF347_uc010eql.1_Silent_p.Y598Y|ZNF347_uc002qbc.1_Silent_p.Y598Y	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	597	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		CATTACATTTATAAGGTTTCT	0.388													4	189					0	0	0.00024832	0	0
ZNF347	84671	broad.mit.edu	37	19	53644356	53644356	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:53644356G>C	uc002qbb.1	-	5	1794	c.1725C>G	c.(1723-1725)GGC>GGG	p.G575G	ZNF347_uc010eql.1_Silent_p.G576G|ZNF347_uc002qbc.1_Silent_p.G576G	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	575	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		TGAAGACCTTGCCACACTCAT	0.418													6	217					0	0	3.59834e-05	0	0
ZNF845	91664	broad.mit.edu	37	19	53855196	53855196	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:53855196T>C	uc010ydv.1	+	4	1385	c.1268T>C	c.(1267-1269)ATG>ACG	p.M423T	ZNF845_uc010ydw.1_Missense_Mutation_p.M423T	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	423	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCAGTCAGATGTCATCCCTT	0.408													6	174					0	0	8.12818e-05	0	0
ZNF845	91664	broad.mit.edu	37	19	53855830	53855830	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:53855830T>C	uc010ydv.1	+	4	2019	c.1902T>C	c.(1900-1902)CCT>CCC	p.P634P	ZNF845_uc010ydw.1_Silent_p.P634P	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	634					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAGAGAAACCTTACAAATGTG	0.363													11	61					0	0	0.000673444	0	0
LILRA3	11026	broad.mit.edu	37	19	54803598	54803598	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:54803598C>T	uc002qfd.2	-	3	291	c.226G>A	c.(226-228)GAG>AAG	p.E76K	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Missense_Mutation_p.E76K	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	76	Ig-like C2-type 1.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TTCACAAGCTCCTGTGGGATC	0.537													6	61					0	0	8.12818e-05	0	0
LENG8	114823	broad.mit.edu	37	19	54969503	54969503	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:54969503G>T	uc002qfv.1	+	14	2076	c.1932G>T	c.(1930-1932)ACG>ACT	p.T644T	LENG8_uc002qfw.2_Silent_p.T681T			Q96PV6	LENG8_HUMAN	RecName: Full=Leukocyte receptor cluster member 8;	644							protein binding			central_nervous_system(1)|pancreas(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.139)		ACATCACCACGGAGCTGGCAT	0.597													5	82					0.000157383	0.00173811	0.000157383	1	0
FCAR	2204	broad.mit.edu	37	19	55401189	55401189	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:55401189C>G	uc002qhr.1	+	5	1021	c.824C>G	c.(823-825)CCA>CGA	p.P275R	FCAR_uc002qhs.1_RNA|FCAR_uc002qht.1_Missense_Mutation_p.P226R|FCAR_uc010esi.1_Missense_Mutation_p.P152R|FCAR_uc002qhu.1_Missense_Mutation_p.P179R|FCAR_uc002qhv.1_Missense_Mutation_p.P253R|FCAR_uc002qhw.1_Missense_Mutation_p.P263R|FCAR_uc002qhx.1_Missense_Mutation_p.P167R|FCAR_uc002qhy.1_Missense_Mutation_p.P241R|FCAR_uc002qhz.1_3'UTR|FCAR_uc002qia.1_Missense_Mutation_p.P166R	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	275	Cytoplasmic (Potential).				immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		ATGTGTCAGCCAGGATTGACC	0.527													4	154					0	0	0.00024832	0	0
NLRP7	199713	broad.mit.edu	37	19	55449463	55449463	+	Missense_Mutation	SNP	C	G	G	rs104895502		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:55449463C>G	uc002qih.3	-	5	2154	c.2078G>C	c.(2077-2079)CGG>CCG	p.R693P	NLRP7_uc002qig.3_Missense_Mutation_p.R665P|NLRP7_uc002qii.3_Missense_Mutation_p.R693P|NLRP7_uc010esk.2_Missense_Mutation_p.R693P|NLRP7_uc010esl.2_Missense_Mutation_p.R721P	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	693	LRR 2.		R -> W (in HYDM).|R -> P (in HYDM).|R -> Q (in HYDM).				ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		ACAAAGAATCCGCACAGAAGA	0.468													6	247					0	0	0.000157383	0	0
NLRP7	199713	broad.mit.edu	37	19	55450847	55450847	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:55450847A>G	uc002qih.3	-	4	1416	c.1340T>C	c.(1339-1341)CTG>CCG	p.L447P	NLRP7_uc002qig.3_Missense_Mutation_p.L447P|NLRP7_uc002qii.3_Missense_Mutation_p.L447P|NLRP7_uc010esk.2_Missense_Mutation_p.L447P|NLRP7_uc010esl.2_Missense_Mutation_p.L475P	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	447	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GTCCAGGAACAGACGGAGGTC	0.622													3	57					0	0	6.4e-05	0	0
EPS8L1	54869	broad.mit.edu	37	19	55597560	55597560	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:55597560G>A	uc002qis.3	+	16	1754	c.1650G>A	c.(1648-1650)CTG>CTA	p.L550L	EPS8L1_uc010ess.1_Silent_p.L564L|EPS8L1_uc010yfr.1_Silent_p.L486L|EPS8L1_uc002qiu.2_Silent_p.L423L|EPS8L1_uc002qiv.2_Silent_p.L228L|EPS8L1_uc002qiw.2_Silent_p.L329L	NM_133180	NP_573441	Q8TE68	ES8L1_HUMAN	epidermal growth factor receptor pathway	550	Pro-rich.					cytoplasm					0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		CCCGCAGCCTGGTGAGCCAGC	0.652													4	55					0	0	3.59834e-05	0	0
TNNI3	7137	broad.mit.edu	37	19	55663270	55663270	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:55663270C>G	uc002qjg.3	-	8	565	c.565G>C	c.(565-567)GGA>CGA	p.G189R	TNNT1_uc002qjb.3_5'Flank|TNNT1_uc002qjc.3_5'Flank|TNNT1_uc002qje.3_5'Flank|TNNT1_uc002qjd.3_5'Flank|TNNT1_uc002qjf.2_5'Flank|TNNI3_uc010yft.1_Missense_Mutation_p.G181R	NM_000363	NP_000354	P19429	TNNI3_HUMAN	troponin I, cardiac	189					cardiac muscle contraction|cellular calcium ion homeostasis|muscle filament sliding|negative regulation of ATPase activity|regulation of systemic arterial blood pressure by ischemic conditions|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin binding|calcium channel inhibitor activity|calcium-dependent protein binding|protein domain specific binding|protein kinase binding|troponin C binding|troponin T binding			lung(1)|pancreas(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		CGCCAGTCTCCCACCTCCCGG	0.567													4	90					0	0	3.59834e-05	0	0
NLRP11	204801	broad.mit.edu	37	19	56320425	56320425	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:56320425C>A	uc010ygf.1	-	5	2262	c.1551G>T	c.(1549-1551)ATG>ATT	p.M517I	NLRP11_uc002qlz.2_Missense_Mutation_p.M418I|NLRP11_uc002qmb.2_Missense_Mutation_p.M418I|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	517							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		AGCTGTCTACCATCGGTAGCT	0.408													8	153					5.18039e-06	6.44204e-05	0.000157383	1	0
NLRP13	126204	broad.mit.edu	37	19	56424240	56424240	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:56424240C>T	uc010ygg.1	-	5	968	c.943G>A	c.(943-945)GAA>AAA	p.E315K		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	315	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		ATGATTATTTCCTCAAAGCCA	0.453													24	77					0	0	0.00047179	0	0
NLRP13	126204	broad.mit.edu	37	19	56424604	56424604	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:56424604G>T	uc010ygg.1	-	5	604	c.579C>A	c.(577-579)GAC>GAA	p.D193E		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	193							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		AACTGATGTTGTCCCATGTCT	0.453													6	159					1.06961e-07	1.39386e-06	0.000157383	1	0
NLRP8	126205	broad.mit.edu	37	19	56459300	56459300	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:56459300C>T	uc002qmh.2	+	1	103	c.32C>T	c.(31-33)CCC>CTC	p.P11L	NLRP8_uc010etg.2_Missense_Mutation_p.P11L	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	11						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TCTGACACCCCCATTCCCTTT	0.507													17	182					0	0	0.000958276	0	0
ZNF667	63934	broad.mit.edu	37	19	56973710	56973710	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:56973710G>T	uc002qnd.2	-	2	192	c.30C>A	c.(28-30)TCC>TCA	p.S10S	ZNF667_uc010etl.2_5'UTR|ZNF667_uc002qne.2_Silent_p.S10S|ZNF667_uc010etm.2_5'UTR	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	10					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		CACTTACCTTGGATTTGGATT	0.532													7	139					0.000274275	0.00290969	0.000274275	1	0
ZFP28	140612	broad.mit.edu	37	19	57061948	57061948	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:57061948G>C	uc002qnj.2	+	7	943	c.872G>C	c.(871-873)CGA>CCA	p.R291P	ZFP28_uc002qni.2_Missense_Mutation_p.R291P|uc002qnk.1_Intron	NM_020828	NP_065879	Q8NHY6	ZFP28_HUMAN	zinc finger protein 28	291	KRAB 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0302)		ATGGTGAAGCGAGAGCTGACA	0.493													4	110					0	0	0.00024832	0	0
ZFP28	140612	broad.mit.edu	37	19	57066327	57066327	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:57066327G>C	uc002qnj.2	+	8	2244	c.2173G>C	c.(2173-2175)GGC>CGC	p.G725R	uc002qnk.1_Intron	NM_020828	NP_065879	Q8NHY6	ZFP28_HUMAN	zinc finger protein 28	725					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0302)		ACTGCACACTGGCCAAAGACC	0.413													6	107					0	0	0.000442599	0	0
ZIM3	114026	broad.mit.edu	37	19	57647091	57647091	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:57647091C>G	uc002qnz.1	-	5	1000	c.614G>C	c.(613-615)GGG>GCG	p.G205A		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	205	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CCACTTCTCCCCGAATGCTCT	0.438													6	260					0	0	0.000157383	0	0
ZNF549	256051	broad.mit.edu	37	19	58046562	58046562	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:58046562G>C	uc002qpb.1	+	3	372	c.123G>C	c.(121-123)TGG>TGC	p.W41C	ZNF547_uc002qpm.3_Intron|ZNF549_uc010eud.1_Missense_Mutation_p.W41C|ZNF549_uc002qpa.1_Missense_Mutation_p.W28C	NM_153263	NP_694995	Q6P9A3	ZN549_HUMAN	zinc finger protein 549	41	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AGGAGGAGTGGGGCCTCCTTG	0.493													4	105					0	0	0.00024832	0	0
ZNF550	162972	broad.mit.edu	37	19	58059187	58059187	+	Missense_Mutation	SNP	G	C	C	rs142200842	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:58059187G>C	uc002qpe.1	-	2	302	c.302C>G	c.(301-303)CCG>CGG	p.P101R	ZNF547_uc002qpm.3_Intron|ZNF549_uc010eud.1_Intron|ZNF550_uc002qpc.2_RNA|ZNF550_uc010eue.1_RNA|ZNF550_uc002qpd.2_RNA	NM_001039654	NP_001034743	Q7Z398	ZN550_HUMAN	zinc finger protein 550	142					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GTCTGTCTCCGGTGTCACTTT	0.512													5	256					0	0	3.59834e-05	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58190039	58190039	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:58190039G>C	uc002qpu.2	+	5	1765	c.1068G>C	c.(1066-1068)CGG>CGC	p.R356R		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	356	C2H2-type 2.				telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CAGACCTACGGGTGCATCAGA	0.453													4	143					0	0	0.00024832	0	0
A1BG	1	broad.mit.edu	37	19	58858888	58858888	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr19:58858888C>G	uc002qsd.3	-	7	1373	c.1311G>C	c.(1309-1311)GAG>GAC	p.E437D	NCRNA00181_uc002qse.2_5'Flank	NM_130786	NP_570602	P04217	A1BG_HUMAN	alpha 1B-glycoprotein precursor	437	Ig-like V-type 5.					extracellular region					0		all_cancers(17;3.04e-16)|all_epithelial(17;7.77e-12)|Lung NSC(17;3.25e-05)|Colorectal(82;5.46e-05)|all_lung(17;0.000129)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(17;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0269)		TCGTCTCGCCCTCGCGCAGCA	0.726													3	20					0	0	3.59834e-05	0	0
SNTG2	54221	broad.mit.edu	37	2	1133353	1133353	+	Splice_Site	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:1133353T>C	uc002qwq.2	+	5	497	c.369_splice	c.e5+2	p.Q123_splice	SNTG2_uc002qwp.2_Splice_Site|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2						central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		GTTCTCCAGGTCAGTATTGTA	0.378													3	78					0	0	0.000602214	0	0
SNTG2	54221	broad.mit.edu	37	2	1133484	1133484	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:1133484C>A	uc002qwq.2	+	6	528	c.400C>A	c.(400-402)CAT>AAT	p.H134N	SNTG2_uc002qwp.2_RNA|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	134	PDZ.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		AAATGCAACTCATGAAGAAGT	0.269													8	209					0.000274275	0.00290969	0.000274275	1	0
PXDN	7837	broad.mit.edu	37	2	1653323	1653323	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:1653323C>T	uc002qxa.2	-	17	2293	c.2229G>A	c.(2227-2229)ACG>ACA	p.T743T		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	743					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		TGCCGTCGTGCGTCCGGTACT	0.607													7	83					0	0	8.12818e-05	0	0
RPS7	6201	broad.mit.edu	37	2	3628456	3628456	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:3628456C>A	uc002qxw.2	+	7	675	c.569C>A	c.(568-570)CCA>CAA	p.P190Q	RPS7_uc002qxy.2_RNA	NM_001011	NP_001002	P62081	RS7_HUMAN	ribosomal protein S7	190					endocrine pancreas development|ribosomal small subunit biogenesis|rRNA processing|translational elongation|translational termination|viral transcription	90S preribosome|cytosolic small ribosomal subunit|nucleolus|small-subunit processome	protein binding|RNA binding|structural constituent of ribosome				0	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.0963)|Epithelial(75;0.208)		TTTGAATTCCCAGAGTTTCAA	0.313													6	90					0.000442599	0.00445669	0.000442599	1	0
RSAD2	91543	broad.mit.edu	37	2	7033825	7033825	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:7033825G>A	uc002qyp.1	+	5	1048	c.912G>A	c.(910-912)CTG>CTA	p.L304L		NM_080657	NP_542388	Q8WXG1	RSAD2_HUMAN	radical S-adenosyl methionine domain containing	304					defense response to virus	endoplasmic reticulum membrane|Golgi apparatus	catalytic activity|iron-sulfur cluster binding|metal ion binding				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			OV - Ovarian serous cystadenocarcinoma(76;0.191)		ACCTTATTCTGGATGAATATG	0.328													5	137					0	0	8.12818e-05	0	0
KIDINS220	57498	broad.mit.edu	37	2	8872103	8872103	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:8872103G>A	uc002qzc.2	-	30	4245	c.4063C>T	c.(4063-4065)CGC>TGC	p.R1355C	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_Missense_Mutation_p.R1256C|KIDINS220_uc002qzb.2_Missense_Mutation_p.R209C	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1355	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					GGGGTTCTGCGAGTTTGTGAC	0.353													19	146					0	0	0.000132079	0	0
KIDINS220	57498	broad.mit.edu	37	2	8957756	8957756	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:8957756G>T	uc002qzc.2	-	4	480	c.298C>A	c.(298-300)CGT>AGT	p.R100S	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_Missense_Mutation_p.R58S|KIDINS220_uc010yiw.1_Missense_Mutation_p.R100S	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	100	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					ACCATATCACGGTGCTCCAAG	0.328													6	99					0.000442599	0.00445669	0.000442599	1	0
CPSF3	51692	broad.mit.edu	37	2	9574012	9574012	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:9574012G>C	uc002qzo.1	+	6	567	c.532G>C	c.(532-534)GGT>CGT	p.G178R	CPSF3_uc010ewx.1_Missense_Mutation_p.G178R|CPSF3_uc002qzp.1_Missense_Mutation_p.G141R	NM_016207	NP_057291	Q9UKF6	CPSF3_HUMAN	cleavage and polyadenylation specific factor 3,	178					histone mRNA 3'-end processing|mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex|ribonucleoprotein complex	5'-3' exonuclease activity|endoribonuclease activity|metal ion binding|protein binding|RNA binding			breast(2)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)	all_cancers(51;2.39e-25)|all_epithelial(98;8.75e-19)|Lung NSC(108;2.38e-06)|Ovarian(717;0.0308)		all cancers(51;2.2e-40)|Epithelial(75;6.71e-35)|OV - Ovarian serous cystadenocarcinoma(76;4.35e-21)|STAD - Stomach adenocarcinoma(1183;0.00644)		TTTGTACACTGGTGATTTCTC	0.318													4	223					0	0	3.59834e-05	0	0
GRHL1	29841	broad.mit.edu	37	2	10126376	10126376	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:10126376G>C	uc002raa.2	+	9	1406	c.1235G>C	c.(1234-1236)CGG>CCG	p.R412P	GRHL1_uc002rab.2_RNA|GRHL1_uc002rad.2_Missense_Mutation_p.R223P|GRHL1_uc010yjb.1_Missense_Mutation_p.R261P	NM_198182	NP_937825	Q9NZI5	GRHL1_HUMAN	grainyhead-like 1	412					cellular lipid metabolic process|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding			pancreas(1)|skin(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.246)		CCTGTGCACCGGGCCTACTGC	0.488													4	175					0	0	0.000157383	0	0
ATP6V1C2	245973	broad.mit.edu	37	2	10866631	10866631	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:10866631G>C	uc002ras.2	+	3	242	c.133G>C	c.(133-135)GGG>CGG	p.G45R	ATP6V1C2_uc002rat.2_Missense_Mutation_p.G45R	NM_001039362	NP_001034451	Q8NEY4	VATC2_HUMAN	vacuolar H+ ATPase C2 isoform a	45					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting V-type ATPase, V1 domain				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.15)|OV - Ovarian serous cystadenocarcinoma(76;0.152)		TGTCTAGGTGGGGACCTTGGA	0.458													4	77					0	0	0.000157383	0	0
PDIA6	10130	broad.mit.edu	37	2	10929925	10929925	+	Missense_Mutation	SNP	G	C	C	rs149489060		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:10929925G>C	uc002rau.2	-	8	928	c.790C>G	c.(790-792)CGG>GGG	p.R264G	PDIA6_uc010yjg.1_Missense_Mutation_p.R261G|PDIA6_uc002rav.2_Missense_Mutation_p.R316G|PDIA6_uc010yjh.1_Missense_Mutation_p.R269G|PDIA6_uc002raw.2_Missense_Mutation_p.R312G	NM_005742	NP_005733	Q15084	PDIA6_HUMAN	protein disulfide isomerase A6 precursor	264	Thioredoxin 2.				cell redox homeostasis|glycerol ether metabolic process|protein folding	endoplasmic reticulum lumen|ER-Golgi intermediate compartment|melanosome|plasma membrane	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.149)|OV - Ovarian serous cystadenocarcinoma(76;0.15)		TCAAGGGCCCGGGACACGATG	0.453													4	112					0	0	3.59834e-05	0	0
KCNF1	3754	broad.mit.edu	37	2	11052795	11052795	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:11052795G>T	uc002rax.2	+	1	733	c.243G>T	c.(241-243)AGG>AGT	p.R81S		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	81	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		ACTTTGACAGGGACCCGGACG	0.577													5	51					0.000274275	0.00290969	0.000274275	1	0
ROCK2	9475	broad.mit.edu	37	2	11359142	11359142	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:11359142C>A	uc002rbd.1	-	10	1719	c.1270G>T	c.(1270-1272)GAC>TAC	p.D424Y		NM_004850	NP_004841	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein	424	AGC-kinase C-terminal.|Interaction with PPP1R12A.				axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			stomach(2)|skin(2)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		GATGGAGAGTCACTTAATAAT	0.279													7	151					0.000442599	0.00445669	0.000442599	1	0
ROCK2	9475	broad.mit.edu	37	2	11367472	11367472	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:11367472G>T	uc002rbd.1	-	6	1225	c.776C>A	c.(775-777)CCT>CAT	p.P259H		NM_004850	NP_004841	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein	259	Protein kinase.				axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			stomach(2)|skin(2)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		CAGAACCTCAGGTGATATATA	0.418													7	146					0.000673444	0.00655963	0.000673444	1	0
GREB1	9687	broad.mit.edu	37	2	11696759	11696759	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:11696759G>C	uc002rbk.1	+	2	319	c.19G>C	c.(19-21)GGA>CGA	p.G7R	GREB1_uc002rbl.2_Missense_Mutation_p.G7R|GREB1_uc002rbm.2_Intron|GREB1_uc002rbn.1_Missense_Mutation_p.G7R	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	7						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		TTCTTACGCTGGACAGCTGAA	0.512													4	139					0	0	0.000157383	0	0
GREB1	9687	broad.mit.edu	37	2	11738016	11738016	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:11738016G>T	uc002rbk.1	+	14	2364	c.2064G>T	c.(2062-2064)CTG>CTT	p.L688L	GREB1_uc002rbo.1_Silent_p.L322L	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	688						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		ATCTGGACCTGGGATCCTTTG	0.547													8	181					1.58986e-06	2.00859e-05	0.000673444	1	0
DDX1	1653	broad.mit.edu	37	2	15758308	15758308	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:15758308G>C	uc002rce.2	+	16	1408	c.1120G>C	c.(1120-1122)GGG>CGG	p.G374R	DDX1_uc010yjq.1_Missense_Mutation_p.G282R	NM_004939	NP_004930	Q92499	DDX1_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	374	Necessary for interaction with RELA.|Helicase ATP-binding.				DNA duplex unwinding|double-strand break repair|multicellular organismal development|regulation of transcription, DNA-dependent|regulation of translational initiation|spliceosome assembly|transcription, DNA-dependent	cleavage body|stress granule|tRNA-splicing ligase complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|DNA/RNA helicase activity|exonuclease activity|poly(A) RNA binding|protein binding|RNA helicase activity|transcription cofactor activity			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.197)	all_epithelial(98;2.96e-07)|Acute lymphoblastic leukemia(84;4.24e-05)|Ovarian(717;0.0694)	GBM - Glioblastoma multiforme(3;0.00969)	Epithelial(75;4.35e-05)|OV - Ovarian serous cystadenocarcinoma(76;0.133)		CATGCAGGATGGGCTTCTTTC	0.289													7	263					0	0	0.000442599	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17697653	17697653	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:17697653G>T	uc002rcl.1	-	1	2054	c.2030C>A	c.(2029-2031)ACA>AAA	p.T677K	RAD51AP2_uc010exn.1_Missense_Mutation_p.T668K	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	677										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CGGAAAACCTGTATTTTGAGT	0.274													5	165					0.000157383	0.00173811	0.000157383	1	0
APOB	338	broad.mit.edu	37	2	21228855	21228855	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:21228855G>C	uc002red.2	-	26	11013	c.10885C>G	c.(10885-10887)CAG>GAG	p.Q3629E		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3629					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTGATCTTCTGGTTCTTAGTG	0.483													4	183					0	0	3.59834e-05	0	0
APOB	338	broad.mit.edu	37	2	21233784	21233784	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:21233784G>T	uc002red.2	-	26	6084	c.5956C>A	c.(5956-5958)CAA>AAA	p.Q1986K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1986					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTGTTAAATTGGGTCTTGAGT	0.463													10	277					0.000308642	0.00326428	0.000308642	1	0
APOB	338	broad.mit.edu	37	2	21236133	21236133	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:21236133G>A	uc002red.2	-	25	4243	c.4115C>T	c.(4114-4116)TCC>TTC	p.S1372F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1372					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ACCACTGTAGGAGGCGGACCA	0.502													13	229					0	0	0.000219431	0	0
APOB	338	broad.mit.edu	37	2	21242744	21242744	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:21242744C>G	uc002red.2	-	19	2978	c.2850G>C	c.(2848-2850)ACG>ACC	p.T950T		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	950	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GGATCACCTCCGTTTTGGTGG	0.453													4	238					0	0	3.59834e-05	0	0
APOB	338	broad.mit.edu	37	2	21252533	21252533	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:21252533C>G	uc002red.2	-	12	1723	c.1595G>C	c.(1594-1596)CGG>CCG	p.R532P		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	532	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTCCATTTTCCGCAGAGCCTG	0.428													5	396					0	0	0.000442599	0	0
APOB	338	broad.mit.edu	37	2	21257717	21257717	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:21257717G>T	uc002red.2	-	8	1003	c.875C>A	c.(874-876)CCA>CAA	p.P292Q		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	292	Vitellogenin.|Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GTTGATCTTTGGTGTGTCTTC	0.453													10	316					0.000673444	0.00655963	0.000673444	1	0
SF3B14	51639	broad.mit.edu	37	2	24290642	24290642	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:24290642G>T	uc002rev.2	-	4	583	c.368C>A	c.(367-369)CCA>CAA	p.P123Q	SF3B14_uc010eyb.2_RNA	NM_016047	NP_057131	Q9Y3B4	PM14_HUMAN	splicing factor 3B, 14 kDa subunit	123					nuclear mRNA splicing, via spliceosome	nucleoplasm|U12-type spliceosomal complex	nucleotide binding|protein binding|RNA binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTATTTTGGTGGATCTGTGTT	0.348													7	175					2.31682e-05	0.000280436	0.000308642	1	0
CENPA	1058	broad.mit.edu	37	2	27016077	27016077	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:27016077G>C	uc002rhr.2	+	4	536	c.353G>C	c.(352-354)CGA>CCA	p.R118P	CENPA_uc002rht.2_RNA|CENPA_uc002rhs.2_Missense_Mutation_p.R92P	NM_001809	NP_001800	P49450	CENPA_HUMAN	centromere protein A isoform a	118	H3-like.				CenH3-containing nucleosome assembly at centromere|establishment of mitotic spindle orientation|interspecies interaction between organisms|kinetochore assembly|mitotic prometaphase|protein localization to chromosome, centromeric region	condensed nuclear chromosome kinetochore|cytosol|nucleoplasm|nucleosome	chromatin binding|DNA binding|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CATGCAGGCCGAGTTACTCTC	0.532													4	187					0	0	0.00024832	0	0
C2orf28	51374	broad.mit.edu	37	2	27439426	27439426	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:27439426G>T	uc002rjf.2	+	6	861	c.688G>T	c.(688-690)GGT>TGT	p.G230C	C2orf28_uc002rjg.2_Missense_Mutation_p.G117C|C2orf28_uc002rjh.2_RNA|CAD_uc002rji.2_5'Flank|CAD_uc010eyw.2_5'Flank	NM_080592	NP_542159	Q6UW56	APR3_HUMAN	apoptosis related protein 3 isoform b	175	EGF-like.|Extracellular (Potential).					integral to membrane|plasma membrane				skin(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGTACCTGATGGTCCAGGTCT	0.423													8	278					0.000978159	0.00917326	0.000978159	1	0
GTF3C2	2976	broad.mit.edu	37	2	27565843	27565843	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:27565843G>A	uc002rjv.1	-	4	782	c.419C>T	c.(418-420)CCT>CTT	p.P140L	GTF3C2_uc002rju.1_Missense_Mutation_p.P151L|GTF3C2_uc002rjw.1_Missense_Mutation_p.P140L|GTF3C2_uc010eyz.1_Missense_Mutation_p.P140L	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	140						transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCGTTTCTTAGGCATGGGGGT	0.537													15	122					0	0	0.00074312	0	0
C2orf16	84226	broad.mit.edu	37	2	27804462	27804462	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:27804462C>A	uc002rkz.3	+	1	5074	c.5023C>A	c.(5023-5025)CAG>AAG	p.Q1675K	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1675	27 X 8 AA approximative tandem repeat of P-S-E-R-S-H-H-S.|Arg-rich.									large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CAGTCCCTCCCAGAGGAGCCA	0.572													7	150					3.86212e-05	0.000457303	0.000673444	1	0
GEMIN6	79833	broad.mit.edu	37	2	39008704	39008705	+	Nonsense_Mutation	DNP	CG	GT	GT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:39008704_39008705CG>GT	uc002rrc.2	+	3	290_291	c.174_175CG>GT	c.(172-177)ACCGGA>ACGTGA	p.G59*	GEMIN6_uc002rrb.2_RNA	NM_024775	NP_079051	Q8WXD5	GEMI6_HUMAN	gemin 6	59					ncRNA metabolic process|spliceosomal snRNP assembly|spliceosome assembly	Cajal body|cytosol|spliceosomal complex	protein binding				0		all_hematologic(82;0.21)				TGTCTGTGACCGGAATTATGGG	0.441													4	163					0	0	6.4e-05	0	0
DHX57	90957	broad.mit.edu	37	2	39033767	39033767	+	Silent	SNP	A	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:39033767A>T	uc002rrf.2	-	22	3849	c.3750T>A	c.(3748-3750)GCT>GCA	p.A1250A	DHX57_uc002rrd.3_Intron|DHX57_uc002rre.2_Silent_p.A683A	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	1250							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				ACTTCAACTCAGCTGATTTTG	0.383													5	148					0	0	3.59834e-05	0	0
DHX57	90957	broad.mit.edu	37	2	39082228	39082228	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:39082228C>G	uc002rrf.2	-	8	1975	c.1876G>C	c.(1876-1878)GGA>CGA	p.G626R	DHX57_uc002rrd.3_5'UTR|DHX57_uc002rre.2_Missense_Mutation_p.G59R|DHX57_uc002rrg.2_Missense_Mutation_p.G626R	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	626	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				ATCTGGTATCCCACGGTCAGA	0.443													5	285					0	0	0.000157383	0	0
THUMPD2	80745	broad.mit.edu	37	2	39983097	39983097	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:39983097C>G	uc002rru.2	-	7	932	c.895G>C	c.(895-897)GGT>CGT	p.G299R	THUMPD2_uc002rrv.2_RNA|THUMPD2_uc010ynt.1_Missense_Mutation_p.G190R	NM_025264	NP_079540	Q9BTF0	THUM2_HUMAN	THUMP domain containing 2	299							methyltransferase activity			skin(1)	1		all_hematologic(82;0.248)				ACAAATGCACCAGCCTGCAGA	0.338													4	82					0	0	0.00024832	0	0
THADA	63892	broad.mit.edu	37	2	43732814	43732814	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:43732814C>G	uc002rsw.3	-	24	3920	c.3568G>C	c.(3568-3570)GAG>CAG	p.E1190Q	THADA_uc010far.2_Missense_Mutation_p.E459Q|THADA_uc002rsx.3_Missense_Mutation_p.E1190Q|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Missense_Mutation_p.E899Q|THADA_uc010fat.1_Missense_Mutation_p.E337Q|THADA_uc002rta.2_Missense_Mutation_p.E900Q	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	1190							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				GAGATTAACTCTTTCATTGTT	0.373													4	347					0	0	0.000602214	0	0
THADA	63892	broad.mit.edu	37	2	43776363	43776363	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:43776363G>T	uc002rsw.3	-	20	3444	c.3092C>A	c.(3091-3093)TCT>TAT	p.S1031Y	THADA_uc010far.2_Missense_Mutation_p.S300Y|THADA_uc002rsx.3_Missense_Mutation_p.S1031Y|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Missense_Mutation_p.S740Y|THADA_uc010fat.1_Missense_Mutation_p.S178Y|THADA_uc002rta.2_Missense_Mutation_p.S741Y	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	1031							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				GATTTCTGTAGAAGTATCAAT	0.299													12	415					0.000219431	0.00241088	0.000219431	1	0
THADA	63892	broad.mit.edu	37	2	43779389	43779389	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:43779389C>G	uc002rsw.3	-	18	3116	c.2764G>C	c.(2764-2766)GGG>CGG	p.G922R	THADA_uc010far.2_Missense_Mutation_p.G191R|THADA_uc002rsx.3_Missense_Mutation_p.G922R|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Missense_Mutation_p.G632R|THADA_uc010fat.1_Missense_Mutation_p.G70R|THADA_uc002rta.2_Missense_Mutation_p.G632R|THADA_uc002rtb.1_Missense_Mutation_p.G922R	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	922							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				TGGACTCGCCCATACATTGGA	0.418													6	296					0	0	0.000442599	0	0
THADA	63892	broad.mit.edu	37	2	43798961	43798962	+	Missense_Mutation	DNP	CG	AC	AC	rs138949612	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:43798961_43798962CG>AC	uc002rsw.3	-	13	2300_2301	c.1948_1949CG>GT	c.(1948-1950)CGG>GTG	p.R650V	THADA_uc010far.2_5'Flank|THADA_uc002rsx.3_Missense_Mutation_p.R650V|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Missense_Mutation_p.R360V|THADA_uc010fat.1_5'Flank|THADA_uc002rta.2_Missense_Mutation_p.R360V|THADA_uc002rtb.1_Missense_Mutation_p.R650V|THADA_uc002rtc.3_Missense_Mutation_p.R650V|THADA_uc002rtd.2_Missense_Mutation_p.R650V	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	650							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				TTCTGTGCTCCGATTACTTTCA	0.361													7	355					0	0	6.4e-05	0	0
THADA	63892	broad.mit.edu	37	2	43801618	43801619	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:43801618_43801619GG>TT	uc002rsw.3	-	11	1937_1938	c.1585_1586CC>AA	c.(1585-1587)CCT>AAT	p.P529N	THADA_uc002rsx.3_Missense_Mutation_p.P529N|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Missense_Mutation_p.P239N|THADA_uc002rta.2_Missense_Mutation_p.P239N|THADA_uc002rtb.1_Missense_Mutation_p.P529N|THADA_uc002rtc.3_Missense_Mutation_p.P529N|THADA_uc002rtd.2_Missense_Mutation_p.P529N	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	529							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				AAAAAGGAGAGGAGAAACCCAA	0.376													9	312					0	0	6.4e-05	0	0
THADA	63892	broad.mit.edu	37	2	43804261	43804261	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:43804261C>G	uc002rsw.3	-	10	1289	c.937G>C	c.(937-939)GGG>CGG	p.G313R	THADA_uc002rsx.3_Missense_Mutation_p.G313R|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_5'Flank|THADA_uc002rsz.2_Missense_Mutation_p.G23R|THADA_uc002rta.2_Missense_Mutation_p.G23R|THADA_uc002rtb.1_Missense_Mutation_p.G313R|THADA_uc002rtc.3_Missense_Mutation_p.G313R|THADA_uc002rtd.2_Missense_Mutation_p.G313R	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	313							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				GCAAGTGTCCCCTGACAGAGG	0.537											OREG0014580	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	255					0	0	3.59834e-05	0	0
LOC728819	728819	broad.mit.edu	37	2	43903235	43903236	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:43903235_43903236CC>AA	uc010fav.1	-	1	226_227	c.226_227GG>TT	c.(226-228)GGA>TTA	p.G76L	PLEKHH2_uc002rte.3_Intron|PLEKHH2_uc002rtf.3_Intron|PLEKHH2_uc010yny.1_Intron	NM_001101330	NP_001094800			C1GALT1-specific chaperone 1-like												0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TTCGGATTCTCCAAAGATGATA	0.401													11	472					0	0	6.4e-05	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43927713	43927713	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:43927713C>T	uc010yny.1	+	8	1699	c.1616C>T	c.(1615-1617)CCT>CTT	p.P539L	PLEKHH2_uc002rte.3_Missense_Mutation_p.P539L|PLEKHH2_uc002rtf.3_Missense_Mutation_p.P538L	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	539						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TACAGCAAACCTCCAACTCCT	0.403													6	274					0	0	0.000157383	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43937651	43937651	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:43937651G>T	uc010yny.1	+	14	2321	c.2238G>T	c.(2236-2238)CAG>CAT	p.Q746H	PLEKHH2_uc002rte.3_Missense_Mutation_p.Q746H|PLEKHH2_uc002rtf.3_Missense_Mutation_p.Q745H	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	746	PH 1.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				GAAAACCCCAGGGCCATATTG	0.284													14	648					0.000566183	0.0056887	0.000566183	1	0
PLEKHH2	130271	broad.mit.edu	37	2	43937678	43937678	+	Nonsense_Mutation	SNP	T	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:43937678T>A	uc010yny.1	+	14	2348	c.2265T>A	c.(2263-2265)TGT>TGA	p.C755*	PLEKHH2_uc002rte.3_Nonsense_Mutation_p.C755*|PLEKHH2_uc002rtf.3_Nonsense_Mutation_p.C754*	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	755	PH 1.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				GTGCATCCTGTAGTATTTTAA	0.299													12	721					0	0	0.000978159	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43953576	43953576	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:43953576T>C	uc010yny.1	+	17	2790	c.2707T>C	c.(2707-2709)TCC>CCC	p.S903P	PLEKHH2_uc002rtf.3_Missense_Mutation_p.S902P	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	903	PH 2.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CCTAATTGGATCCAAGCATGA	0.333													4	270					0	0	0.00024832	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43965548	43965548	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:43965548G>T	uc010yny.1	+	20	3095	c.3012G>T	c.(3010-3012)CAG>CAT	p.Q1004H	PLEKHH2_uc002rtf.3_Missense_Mutation_p.Q1003H	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	1004	MyTH4.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CTTTAGCCCAGAGTGCTTTGC	0.398													15	447					1.87028e-06	2.36178e-05	0.000229342	1	0
PLEKHH2	130271	broad.mit.edu	37	2	43971027	43971027	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:43971027C>A	uc010yny.1	+	23	3537	c.3454C>A	c.(3454-3456)CAG>AAG	p.Q1152K		NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	1152	FERM.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TACTTTGAACCAGGACACAGG	0.393													9	345					0.000978159	0.00917326	0.000978159	1	0
ABCG8	64241	broad.mit.edu	37	2	44079767	44079767	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:44079767G>T	uc002rtq.2	+	6	814	c.724G>T	c.(724-726)GGG>TGG	p.G242W	ABCG8_uc010yoa.1_Missense_Mutation_p.G242W	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	242	ABC transporter.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				ACCCACCTCTGGGCTCGACAG	0.607													11	208					0.000566183	0.0056887	0.000566183	1	0
LRPPRC	10128	broad.mit.edu	37	2	44145173	44145173	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:44145173G>T	uc002rtr.2	-	29	3197	c.3139C>A	c.(3139-3141)CAA>AAA	p.Q1047K	LRPPRC_uc010yob.1_Missense_Mutation_p.Q947K	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	1047	PPR 15.				mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CCTTTTTTTTGGTTCAATCGG	0.458													8	240					1.58986e-06	2.00859e-05	0.000673444	1	0
LRPPRC	10128	broad.mit.edu	37	2	44161995	44161995	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:44161995C>G	uc002rtr.2	-	24	2585	c.2527G>C	c.(2527-2529)GAG>CAG	p.E843Q	LRPPRC_uc010yob.1_Missense_Mutation_p.E743Q	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	843	PPR 13.				mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				ATGGCGACCTCAAGAGCAGTA	0.353													4	253					0	0	3.59834e-05	0	0
LRPPRC	10128	broad.mit.edu	37	2	44173338	44173338	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:44173338G>T	uc002rtr.2	-	21	2182	c.2124C>A	c.(2122-2124)GAC>GAA	p.D708E	LRPPRC_uc010yob.1_Missense_Mutation_p.D608E	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	708	PPR 9.				mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding	p.D708N(1)		ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CAGTAACCATGTCGGATTCAT	0.353													7	343					7.03913e-09	9.29976e-08	0.00010058	1	0
LRPPRC	10128	broad.mit.edu	37	2	44190736	44190736	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:44190736G>T	uc002rtr.2	-	12	1537	c.1479C>A	c.(1477-1479)GCC>GCA	p.A493A	LRPPRC_uc010yob.1_Silent_p.A393A	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	493					mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CCTGCAAAATGGCTCGTGCTG	0.353													10	342					0.000442599	0.00445669	0.000442599	1	0
LRPPRC	10128	broad.mit.edu	37	2	44206985	44206985	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:44206985C>A	uc002rtr.2	-	3	507	c.449G>T	c.(448-450)TGG>TTG	p.W150L	LRPPRC_uc010yob.1_Missense_Mutation_p.W50L|LRPPRC_uc010faw.1_Missense_Mutation_p.W124L	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	150	PPR 1.				mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				AAGTGTGTCCCATATCCTATG	0.353													9	305					0.00010058	0.00115734	0.00010058	1	0
C2orf34	79823	broad.mit.edu	37	2	44993569	44993569	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:44993569G>C	uc002rum.2	+	10	867	c.763G>C	c.(763-765)GGG>CGG	p.G255R		NM_024766	NP_079042	Q7Z624	CMKMT_HUMAN	hypothetical protein LOC79823	255						cytoplasm	calmodulin-lysine N-methyltransferase activity				0		all_hematologic(82;0.0892)|Acute lymphoblastic leukemia(82;0.17)				ACTGTTCTAGGGGAAAGCGAT	0.368													5	84					0	0	0.000274275	0	0
FBXO11	80204	broad.mit.edu	37	2	48036847	48036847	+	Splice_Site	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:48036847C>G	uc010fbl.2	-	20	2201	c.2087_splice	c.e20-1	p.G696_splice	FBXO11_uc002rwe.2_Splice_Site_p.G696_splice|FBXO11_uc010fbk.2_Splice_Site_p.G204_splice	NM_025133	NP_079409	Q86XK2	FBX11_HUMAN	F-box only protein 11 isoform 1						ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|ubiquitin ligase complex	protein binding|protein-arginine N-methyltransferase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)	2		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			ATTTCAATACCTGAAGTAAAA	0.328													3	43					0	0	6.4e-05	0	0
NRXN1	9378	broad.mit.edu	37	2	50318542	50318542	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:50318542G>T	uc010fbp.2	-	3	1339	c.532C>A	c.(532-534)CAT>AAT	p.H178N	NRXN1_uc002rxb.3_Missense_Mutation_p.H885N|NRXN1_uc010fbq.2_Missense_Mutation_p.H1253N|NRXN1_uc002rxe.3_Missense_Mutation_p.H1213N	NM_138735	NP_620072	P58400	NRX1B_HUMAN	neurexin 1 isoform beta precursor	178	Extracellular (Potential).|Laminin G-like.				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CGAACTACATGGTATTTCCCA	0.458													6	93					0.000673444	0.00655963	0.000673444	1	0
TSPYL6	388951	broad.mit.edu	37	2	54483133	54483133	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:54483133G>C	uc002rxr.2	-	1	277	c.156C>G	c.(154-156)CCC>CCG	p.P52P	ACYP2_uc002rxq.3_Intron	NM_001003937	NP_001003937	Q8N831	TSYL6_HUMAN	TSPY-like 6	52					nucleosome assembly	nucleus					0						CTGGAAGCCGGGGCGGTGGGA	0.607													4	88					0	0	3.59834e-05	0	0
RPL23AP32	56969	broad.mit.edu	37	2	54756603	54756603	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:54756603C>A	uc010yot.1	+	1	245	c.121C>A	c.(121-123)CGC>AGC	p.R41S	SPTBN1_uc002rxu.2_Intron|SPTBN1_uc002rxv.1_Intron	NR_002229				SubName: Full=Putative uncharacterized protein DKFZp547I014;												0						AAAGAAGATCCGCATGTCACC	0.542													6	86					1.26484e-09	1.67905e-08	0.000157383	1	0
SMEK2	57223	broad.mit.edu	37	2	55795494	55795494	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:55795494G>T	uc002rzc.2	-	13	2146	c.1771C>A	c.(1771-1773)CTT>ATT	p.L591I	SMEK2_uc002rzb.2_Missense_Mutation_p.L506I|SMEK2_uc002rzd.2_Missense_Mutation_p.L559I|SMEK2_uc002ryz.2_Missense_Mutation_p.L25I|SMEK2_uc002rza.2_Missense_Mutation_p.L382I	NM_001122964	NP_001116436	Q5MIZ7	P4R3B_HUMAN	SMEK homolog 2, suppressor of mek1 isoform 1	591						microtubule organizing center|nucleus	protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			ATAAAGCGAAGGGCACCTAAT	0.313													8	172					0.000978159	0.00917326	0.000978159	1	0
EFEMP1	2202	broad.mit.edu	37	2	56145108	56145108	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:56145108C>A	uc002rzh.2	-	4	539	c.209G>T	c.(208-210)TGC>TTC	p.C70F	EFEMP1_uc002rzi.2_Missense_Mutation_p.C70F|EFEMP1_uc002rzj.2_Missense_Mutation_p.C70F|EFEMP1_uc010ypc.1_Missense_Mutation_p.C12F	NM_004105	NP_004096	Q12805	FBLN3_HUMAN	EGF-containing fibulin-like extracellular matrix	70	EGF-like 1; atypical.				negative regulation of chondrocyte differentiation|peptidyl-tyrosine phosphorylation|regulation of transcription, DNA-dependent|visual perception	extracellular space|proteinaceous extracellular matrix	calcium ion binding|epidermal growth factor receptor activity|epidermal growth factor receptor binding|growth factor activity			ovary(4)|pancreas(1)|skin(1)	6			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TTTCGGAAGGCAGAGGTATCC	0.458													6	118					0.000978159	0.00917326	0.000978159	1	0
MIR216A	406998	broad.mit.edu	37	2	56216107	56216107	+	RNA	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:56216107C>G	hsa-mir-216a|MI0000292	-			c.88C>G			uc002rzk.2_Intron|uc010ype.1_RNA																	0						GGAAATTGCTCTGTTTAGCAT	0.438													4	111					0	0	3.59834e-05	0	0
BCL11A	53335	broad.mit.edu	37	2	60687692	60687692	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:60687692G>T	uc002sae.1	-	4	2583	c.2355C>A	c.(2353-2355)CTC>CTA	p.L785L	BCL11A_uc002sab.2_Intron|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Silent_p.L751L|BCL11A_uc002sad.1_Silent_p.L633L|BCL11A_uc002saf.1_Silent_p.L751L	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	785	C2H2-type 5.				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			TGTGCCTGGTGAGCTTGCTAC	0.493			T	IGH@	B-CLL								9	337					0.000442599	0.00445669	0.000442599	1	0
KIAA1841	84542	broad.mit.edu	37	2	61308592	61308592	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:61308592G>T	uc002saw.3	+	7	979	c.676G>T	c.(676-678)GGA>TGA	p.G226*	KIAA1841_uc002sax.3_Nonsense_Mutation_p.G80*|KIAA1841_uc002say.2_Nonsense_Mutation_p.G226*|KIAA1841_uc002sav.3_Nonsense_Mutation_p.G226*	NM_001129993	NP_001123465	Q6NSI8	K1841_HUMAN	KIAA1841 protein isoform a	226											0			Epithelial(17;0.193)			TTTAGAGCCAGGAAATGTCAT	0.328													10	297					1.58986e-06	2.00859e-05	0.000673444	1	0
USP34	9736	broad.mit.edu	37	2	61524011	61524011	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:61524011C>G	uc002sbe.2	-	30	4200	c.4178G>C	c.(4177-4179)CGG>CCG	p.R1393P		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	1393					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			CTCCCAGACCCGCCTAGACAG	0.378													4	267					0	0	3.59834e-05	0	0
EHBP1	23301	broad.mit.edu	37	2	63101630	63101630	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:63101630C>A	uc002sby.2	+	11	1735	c.1253C>A	c.(1252-1254)ACA>AAA	p.T418K	EHBP1_uc010fcp.2_Missense_Mutation_p.T383K|EHBP1_uc002sbz.2_Missense_Mutation_p.T383K|EHBP1_uc002scb.2_Missense_Mutation_p.T383K	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1	418						cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			AATGAAAACACAGTTTCTGCA	0.388									Hereditary_Prostate_Cancer				6	220					0.000442599	0.00445669	0.000442599	1	0
EHBP1	23301	broad.mit.edu	37	2	63215083	63215083	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:63215083G>T	uc002sby.2	+	17	3213	c.2731G>T	c.(2731-2733)GAG>TAG	p.E911*	EHBP1_uc010fcp.2_Intron|EHBP1_uc002sbz.2_Intron|EHBP1_uc002scb.2_Nonsense_Mutation_p.E876*	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1	911						cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			TGATAATATTGAGATAGATAC	0.318									Hereditary_Prostate_Cancer				7	113					3.09899e-07	4.00456e-06	0.000274275	1	0
HSPC159	29094	broad.mit.edu	37	2	64682528	64682528	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:64682528G>C	uc002scy.3	+	2	440	c.87G>C	c.(85-87)GCG>GCC	p.A29A		NM_014181	NP_054900	Q3ZCW2	LEGL_HUMAN	galectin-related protein	29						intracellular	sugar binding				0						CAGTTCAAGCGGACGTGTACT	0.393													4	203					0	0	3.59834e-05	0	0
HSPC159	29094	broad.mit.edu	37	2	64682542	64682542	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:64682542C>G	uc002scy.3	+	2	454	c.101C>G	c.(100-102)CCA>CGA	p.P34R		NM_014181	NP_054900	Q3ZCW2	LEGL_HUMAN	galectin-related protein	34						intracellular	sugar binding				0						GTGTACTTCCCACGACTGGTA	0.388													5	184					0	0	0.000602214	0	0
ETAA1	54465	broad.mit.edu	37	2	67637072	67637073	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:67637072_67637073CC>AA	uc002sdz.1	+	6	2822_2823	c.2683_2684CC>AA	c.(2683-2685)CCT>AAT	p.P895N		NM_019002	NP_061875	Q9NY74	ETAA1_HUMAN	ETAA16 protein	895						cytoplasm|nucleus				ovary(3)|large_intestine(1)	4						AAAGTGTTCTCCTGAAGAAATT	0.337													8	179					0	0	6.4e-05	0	0
PNO1	56902	broad.mit.edu	37	2	68389420	68389420	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:68389420G>T	uc002seh.2	+	4	527	c.465G>T	c.(463-465)TTG>TTT	p.L155F		NM_020143	NP_064528	Q9NRX1	PNO1_HUMAN	partner of NOB1	155						nucleolus	RNA binding				0						TCATCAGGTTGGATGACCTCT	0.433													7	109					4.68919e-08	6.14536e-07	0.000673444	1	0
PPP3R1	5534	broad.mit.edu	37	2	68414436	68414436	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:68414436C>G	uc002sei.1	-	4	623	c.231G>C	c.(229-231)GAG>GAC	p.E77D		NM_000945	NP_000936	P63098	CANB1_HUMAN	protein phosphatase 3, regulatory subunit B,	77	EF-hand 2.				activation of pro-apoptotic gene products|induction of apoptosis by intracellular signals	calcineurin complex|cytosol	calcium ion binding|calcium-dependent protein serine/threonine phosphatase activity|calmodulin binding				0					Pimecrolimus(DB00337)	GAGAGACGCCCTCAATGAATT	0.323													3	50					0	0	0.00024832	0	0
PROKR1	10887	broad.mit.edu	37	2	68882178	68882178	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:68882178G>C	uc010yqj.1	+	2	652	c.652G>C	c.(652-654)GGC>CGC	p.G218R	PROKR1_uc002ses.2_RNA	NM_138964	NP_620414	Q8TCW9	PKR1_HUMAN	G protein-coupled receptor 73	218	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(1)	1						GATCTTCTGCGGCCAGATCTG	0.552													4	102					0	0	3.59834e-05	0	0
ANTXR1	84168	broad.mit.edu	37	2	69409628	69409628	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:69409628C>T	uc002sfg.2	+	16	1545	c.1189C>T	c.(1189-1191)CGT>TGT	p.R397C		NM_032208	NP_115584	Q9H6X2	ANTR1_HUMAN	anthrax toxin receptor 1 isoform 1 precursor	397	Cytoplasmic (Potential).				actin cytoskeleton reorganization|substrate adhesion-dependent cell spreading	filopodium membrane|integral to membrane|lamellipodium membrane	actin filament binding|collagen binding|metal ion binding|protein binding|transmembrane receptor activity			ovary(2)|skin(2)	4						ATTTTAGGTTCGTTGGGGAGA	0.413									Familial_Infantile_Hemangioma				13	68					0	0	0.000219431	0	0
CLEC4F	165530	broad.mit.edu	37	2	71043612	71043612	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:71043612G>C	uc002shf.2	-	4	978	c.901C>G	c.(901-903)CAG>GAG	p.Q301E	CLEC4F_uc010yqv.1_Missense_Mutation_p.Q301E	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	301	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						GCCTGGGTCTGGGAGTTTAAA	0.418													4	155					0	0	3.59834e-05	0	0
DYSF	8291	broad.mit.edu	37	2	71816794	71816794	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:71816794C>G	uc002sie.2	+	31	3796	c.3420C>G	c.(3418-3420)CCC>CCG	p.P1140P	DYSF_uc010feg.2_Silent_p.P1171P|DYSF_uc010feh.2_Silent_p.P1126P|DYSF_uc002sig.3_Silent_p.P1126P|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.P1140P|DYSF_uc010fef.2_Silent_p.P1157P|DYSF_uc010fei.2_Silent_p.P1157P|DYSF_uc010fek.2_Silent_p.P1158P|DYSF_uc010fej.2_Silent_p.P1127P|DYSF_uc010fel.2_Silent_p.P1127P|DYSF_uc010feo.2_Silent_p.P1172P|DYSF_uc010fem.2_Silent_p.P1141P|DYSF_uc010fen.2_Silent_p.P1158P|DYSF_uc002sif.2_Silent_p.P1141P|DYSF_uc010yqy.1_Silent_p.P21P	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1140	Cytoplasmic (Potential).|C2 4.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TGAACAGACCCACGATTTCCT	0.502													4	106					0	0	3.59834e-05	0	0
RAB11FIP5	26056	broad.mit.edu	37	2	73316333	73316333	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:73316333G>C	uc002siu.3	-	2	783	c.542C>G	c.(541-543)TCC>TGC	p.S181C	RAB11FIP5_uc002sit.3_Missense_Mutation_p.S103C	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	181					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						GTCCTTCATGGACAGGTCAAA	0.532													4	213					0	0	0.00024832	0	0
ALMS1	7840	broad.mit.edu	37	2	73675821	73675821	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:73675821G>C	uc002sje.1	+	10	2281	c.2170G>C	c.(2170-2172)GGT>CGT	p.G724R	ALMS1_uc002sjf.1_Missense_Mutation_p.G680R|ALMS1_uc002sjg.2_Missense_Mutation_p.G110R|ALMS1_uc002sjh.1_Missense_Mutation_p.G110R	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	722	4.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						AGAGAAGCCTGGTATTTTTTA	0.478													4	120					0	0	3.59834e-05	0	0
WBP1	23559	broad.mit.edu	37	2	74687147	74687147	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:74687147C>T	uc002slj.1	+	3	473	c.320C>T	c.(319-321)CCT>CTT	p.P107L	WBP1_uc002slh.1_RNA|INO80B_uc002sli.1_RNA|WBP1_uc002slk.1_Missense_Mutation_p.P104L|WBP1_uc002sll.1_RNA	NM_012477	NP_036609	Q96G27	WBP1_HUMAN	WW domain binding protein 1	107							WW domain binding				0						GGGGCTGGTCCTTTCCCTACC	0.572													14	64					0	0	0.000422831	0	0
TTC31	64427	broad.mit.edu	37	2	74720228	74720228	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:74720228C>A	uc002slt.2	+	13	1466	c.1443C>A	c.(1441-1443)CCC>CCA	p.P481P	TTC31_uc010yrv.1_Missense_Mutation_p.P140Q|TTC31_uc002slu.2_Silent_p.P335P	NM_022492	NP_071937	Q49AM3	TTC31_HUMAN	tetratricopeptide repeat domain 31	481							binding				0						GAAGCCACCCCAACCAGCCCC	0.602													7	127					1.76689e-08	2.32768e-07	0.000442599	1	0
LOXL3	84695	broad.mit.edu	37	2	74761311	74761311	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:74761311C>A	uc002smp.1	-	12	2064	c.1992G>T	c.(1990-1992)GTG>GTT	p.V664V	LOXL3_uc002smo.1_Silent_p.V303V|LOXL3_uc010ffm.1_Silent_p.V608V|LOXL3_uc002smq.1_Silent_p.V519V|LOXL3_uc010ffn.1_Silent_p.V519V	NM_032603	NP_115992	P58215	LOXL3_HUMAN	lysyl oxidase-like 3 precursor	664	Lysyl-oxidase like.					extracellular space|membrane	copper ion binding|protein-lysine 6-oxidase activity|scavenger receptor activity				0						CCCAGCAACCCACAGTGATGC	0.507													8	83					0.000157383	0.00173811	0.000157383	1	0
HK2	3099	broad.mit.edu	37	2	75117958	75117958	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:75117958C>A	uc002snd.2	+	18	4570	c.2644C>A	c.(2644-2646)CTG>ATG	p.L882M		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	882	Catalytic.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						AGTGAAGGACCTGGCTCCGAA	0.532													10	258					0.000219431	0.00241088	0.000219431	1	0
DNAH6	1768	broad.mit.edu	37	2	84806789	84806789	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:84806789G>A	uc010fgb.2	+	14	2352	c.2215G>A	c.(2215-2217)GAA>AAA	p.E739K	DNAH6_uc002soo.2_Missense_Mutation_p.E318K|DNAH6_uc002sop.2_Missense_Mutation_p.E318K	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	739	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						ATTTCTTGATGAAATTCAGGA	0.358													6	61					0	0	8.12818e-05	0	0
VPS24	51652	broad.mit.edu	37	2	86756387	86756387	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:86756387G>T	uc002srj.2	-	3	369	c.240C>A	c.(238-240)TCC>TCA	p.S80S	VPS24_uc002srk.2_Silent_p.S14S|VPS24_uc002srl.2_Intron|VPS24_uc010ytl.1_Silent_p.S109S	NM_016079	NP_057163	Q9Y3E7	CHMP3_HUMAN	vacuolar protein sorting 24 isoform 1	80	Intramolecular interaction with C- terminus.				cell cycle|cell division|cellular membrane organization|endosome transport|protein transport	cytosol|late endosome membrane	protein binding			central_nervous_system(1)	1						TGTGTGCTTTGGATGCATACA	0.498													8	65					0.000442599	0.00445669	0.000442599	1	0
EIF2AK3	9451	broad.mit.edu	37	2	88857446	88857446	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:88857446C>G	uc002stc.3	-	17	3361	c.3159G>C	c.(3157-3159)ATG>ATC	p.M1053I		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	1053	Cytoplasmic (Potential).|Protein kinase.				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						TGTCTTGAACCATCACGTACT	0.363													6	235					0	0	3.59834e-05	0	0
EIF2AK3	9451	broad.mit.edu	37	2	88885362	88885362	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:88885362G>T	uc002stc.3	-	9	1849	c.1647C>A	c.(1645-1647)CAC>CAA	p.H549Q		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	549	Cytoplasmic (Potential).				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						TTCTTACCCTGTGAGGATGAG	0.259													8	151					0.000442599	0.00445669	0.000442599	1	0
EIF2AK3	9451	broad.mit.edu	37	2	88887597	88887597	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:88887597C>A	uc002stc.3	-	8	1534	c.1332G>T	c.(1330-1332)TTG>TTT	p.L444F		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	444	Lumenal (Potential).				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						CAGATCCTACCAAGACAGGAG	0.294													10	286					0.000673444	0.00655963	0.000673444	1	0
EIF2AK3	9451	broad.mit.edu	37	2	88888352	88888352	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:88888352G>T	uc002stc.3	-	7	1435	c.1233C>A	c.(1231-1233)CCC>CCA	p.P411P		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	411	Lumenal (Potential).				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						CCAAAGCCTTGGGACTTGAAG	0.353													18	395					5.35047e-06	6.64758e-05	0.00047179	1	0
ANKRD20B	729171	broad.mit.edu	37	2	95515053	95515053	+	Splice_Site	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:95515053C>G	uc010fhp.2	-	4		c.399_splice	c.e4-1			NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						TATTACTGTCCTACAAAACAG	0.313													4	145					0	0	3.59834e-05	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95518973	95518973	+	RNA	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:95518973C>G	uc010fhp.2	-	3		c.372G>C				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						ATGTGTGCACCATGGGAAAGC	0.398													4	208					0	0	3.59834e-05	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95522815	95522815	+	RNA	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:95522815A>G	uc010fhp.2	-	1		c.6T>C				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						ATCTTCTGCAATTCGGAGTCC	0.652													4	77					0	0	0.000602214	0	0
Unknown	0	broad.mit.edu	37	2	96521777	96521777	+	Missense_Mutation	SNP	T	C	C	rs77768218		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:96521777T>C	uc002suz.1	-	31	2790	c.1313A>G	c.(1312-1314)CAT>CGT	p.H438R						SubName: Full=Putative uncharacterized protein ENSP00000312008; Flags: Fragment;																		AAGGTCTTCATGCTTTCTTTT	0.383													4	23					0	0	8.12818e-05	0	0
SNRNP200	23020	broad.mit.edu	37	2	96967353	96967353	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:96967353C>G	uc002svu.2	-	4	569	c.483G>C	c.(481-483)CTG>CTC	p.L161L		NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	161						catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						CTGTTTGACCCAGCAGCAGGT	0.458													5	141					0	0	3.59834e-05	0	0
VWA3B	200403	broad.mit.edu	37	2	98804585	98804585	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:98804585C>G	uc002syo.2	+	10	1723	c.1459C>G	c.(1459-1461)CGA>GGA	p.R487G	VWA3B_uc010yvh.1_Missense_Mutation_p.R337G|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_Intron|VWA3B_uc002syl.1_Intron|VWA3B_uc002sym.2_Missense_Mutation_p.R487G|VWA3B_uc002syn.1_Intron|VWA3B_uc010yvi.1_Missense_Mutation_p.R144G	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	487										ovary(3)|large_intestine(2)|skin(1)	6						GGCCCGGATCCGAAGGAGGTT	0.473													4	83					0	0	3.59834e-05	0	0
CNGA3	1261	broad.mit.edu	37	2	99013320	99013320	+	Missense_Mutation	SNP	C	A	A	rs150153987		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:99013320C>A	uc002syt.2	+	8	2104	c.1687C>A	c.(1687-1689)CGC>AGC	p.R563S	CNGA3_uc002syu.2_Missense_Mutation_p.R545S|CNGA3_uc010fij.2_Missense_Mutation_p.R567S	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	563	cGMP.		R -> H (in ACHM2; mutant CNGA3 alone or together with the CNGB3 subunit exhibit an increase in apparent affinity for cGMP and an increase in the relative agonist efficacy of cAMP compared with cGMP; cell surface expression levels is significantly reduced).		signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						GTCGGGGAACCGCAGGACGGC	0.582													6	139					0.000442599	0.00445669	0.000442599	1	0
LIPT1	51601	broad.mit.edu	37	2	99778892	99778892	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:99778892G>C	uc002szm.3	+	4	812	c.472G>C	c.(472-474)GGA>CGA	p.G158R	MRPL30_uc002szl.1_Intron|LIPT1_uc002szn.3_Missense_Mutation_p.G158R|LIPT1_uc002szo.3_Missense_Mutation_p.G158R|LIPT1_uc002szp.3_Missense_Mutation_p.G158R|LIPT1_uc002szq.3_Missense_Mutation_p.G158R|MRPL30_uc002szr.2_Intron	NM_145198	NP_660199	Q9Y234	LIPT_HUMAN	lipoyltransferase 1 precursor	158					lipid metabolic process|protein lipoylation	mitochondrion	acyltransferase activity				0					Lipoic Acid(DB00166)	TTTACTTGATGGACAGTTTAA	0.418													4	128					0	0	0.00024832	0	0
LONRF2	164832	broad.mit.edu	37	2	100919445	100919445	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:100919445C>T	uc002tal.3	-	3	1499	c.859G>A	c.(859-861)GAA>AAA	p.E287K	LONRF2_uc010yvs.1_RNA	NM_198461	NP_940863	Q1L5Z9	LONF2_HUMAN	LON peptidase N-terminal domain and ring finger	287	TPR 5.				proteolysis		ATP-dependent peptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2						TAGAGAAATTCCTTTAACACT	0.393													15	87					0	0	0.000422831	0	0
IL1RL1	9173	broad.mit.edu	37	2	102965572	102965572	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:102965572C>A	uc002tbu.1	+	10	1422	c.1151C>A	c.(1150-1152)CCA>CAA	p.P384Q	IL18R1_uc002tbw.3_Intron	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	384	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GTTGTCTACCCACGGAACTAC	0.388													6	75					1.06961e-07	1.39386e-06	0.000157383	1	0
C2orf40	84417	broad.mit.edu	37	2	106694261	106694261	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:106694261G>C	uc010fjf.2	+	4	434	c.326G>C	c.(325-327)CGA>CCA	p.R109P		NM_032411	NP_115787	Q9H1Z8	AUGN_HUMAN	esophageal cancer related gene 4 protein	109						extracellular region|transport vesicle					0						AACAGAGATCGAAATGGACAT	0.453													3	98					0	0	0.000602214	0	0
RGPD3	653489	broad.mit.edu	37	2	107049658	107049658	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:107049658G>T	uc010ywi.1	-	16	2346	c.2289C>A	c.(2287-2289)CTC>CTA	p.L763L		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	763					intracellular transport		binding			ovary(1)	1						CATTTTTATAGAGAGGACCTC	0.373													13	424					7.07596e-05	0.000828646	0.00074312	1	0
RGPD3	653489	broad.mit.edu	37	2	107049681	107049681	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:107049681T>C	uc010ywi.1	-	16	2323	c.2266A>G	c.(2266-2268)AAC>GAC	p.N756D		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	756					intracellular transport		binding			ovary(1)	1						TCACTATAGTTTTCGAGTTCC	0.373													7	386					0	0	8.12818e-05	0	0
RGPD4	285190	broad.mit.edu	37	2	108487649	108487649	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:108487649G>C	uc010ywk.1	+	20	3271	c.3189G>C	c.(3187-3189)CAG>CAC	p.Q1063H	RGPD4_uc002tdu.2_Missense_Mutation_p.Q250H|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1063	RanBD1 1.				intracellular transport		binding			skin(2)	2						TGTATTCACAGGGGGTAAAAC	0.398													5	327					0	0	0.000602214	0	0
RGPD4	285190	broad.mit.edu	37	2	108488542	108488542	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:108488542G>C	uc010ywk.1	+	20	4164	c.4082G>C	c.(4081-4083)AGG>ACG	p.R1361T	RGPD4_uc002tdu.2_Missense_Mutation_p.R548T|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1361	RanBD1 2.				intracellular transport		binding			skin(2)	2						TTTAGTCACAGGGCAGAACTC	0.363													4	262					0	0	8.12818e-05	0	0
SLC5A7	60482	broad.mit.edu	37	2	108625107	108625107	+	Missense_Mutation	SNP	G	C	C	rs147656110		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:108625107G>C	uc002tdv.2	+	8	1358	c.1082G>C	c.(1081-1083)CGG>CCG	p.R361P	SLC5A7_uc010ywm.1_Missense_Mutation_p.R114P|SLC5A7_uc010fjj.2_Missense_Mutation_p.R361P|SLC5A7_uc010ywn.1_Missense_Mutation_p.R248P	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	361	Extracellular (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	ATGTTTGCACGGAACATCTAC	0.403													3	50					0	0	3.59834e-05	0	0
RANBP2	5903	broad.mit.edu	37	2	109384117	109384117	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:109384117G>T	uc002tem.3	+	20	7248	c.7122G>T	c.(7120-7122)AGG>AGT	p.R2374S		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2374	RanBD1 3.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						TGATGAGAAGGGACCAAGTAT	0.358													7	215					0.000673444	0.00655963	0.000673444	1	0
SEPT10	151011	broad.mit.edu	37	2	110323357	110323357	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:110323357G>C	uc002tew.2	-	7	1221	c.842C>G	c.(841-843)CCT>CGT	p.P281R	SEPT10_uc010ywu.1_Missense_Mutation_p.P114R|SEPT10_uc002tex.2_Missense_Mutation_p.P258R|SEPT10_uc002tey.2_Missense_Mutation_p.P281R|SEPT10_uc010ywv.1_Missense_Mutation_p.P147R|SEPT10_uc002tev.1_Missense_Mutation_p.P88R|SEPT10_uc010fjo.2_RNA|SEPT10_uc002tez.1_Missense_Mutation_p.P56R	NM_144710	NP_653311	Q9P0V9	SEP10_HUMAN	septin 10 isoform 1	281					cell cycle|cell division	septin complex	GTP binding				0						AACACCCCAAGGGTACTGGCG	0.438													4	142					0	0	3.59834e-05	0	0
ANAPC1	64682	broad.mit.edu	37	2	112622510	112622510	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:112622510C>G	uc002thi.2	-	8	951	c.704G>C	c.(703-705)CGG>CCG	p.R235P		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	235					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						ATATTGCACCCGTGATGAACC	0.328													4	160					0	0	0.000602214	0	0
TMEM87B	84910	broad.mit.edu	37	2	112854728	112854728	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:112854728G>C	uc002thm.2	+	12	1581	c.1212G>C	c.(1210-1212)CTG>CTC	p.L404L		NM_032824	NP_116213	Q96K49	TM87B_HUMAN	transmembrane protein 87B precursor	404	Helical; (Potential).					integral to membrane					0						TTGCTGTGCTGGGTAAGCTAT	0.308													7	229					0	0	8.12818e-05	0	0
FBLN7	129804	broad.mit.edu	37	2	112944979	112944979	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:112944979C>A	uc002tho.1	+	8	1487	c.1216C>A	c.(1216-1218)CAG>AAG	p.Q406K	FBLN7_uc002thn.2_Silent_p.L321L|FBLN7_uc010fki.1_Missense_Mutation_p.Q360K|FBLN7_uc010fkj.1_Missense_Mutation_p.Q272K	NM_153214	NP_694946	Q53RD9	FBLN7_HUMAN	fibulin 7 isoform 1	406					cell adhesion	proteinaceous extracellular matrix	calcium ion binding|heparin binding			ovary(1)|central_nervous_system(1)	2						GGAGGGGCCTCAGACGCTGGA	0.587													6	89					0.000442599	0.00445669	0.000442599	1	0
SLC20A1	6574	broad.mit.edu	37	2	113420472	113420472	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:113420472G>C	uc002tib.2	+	11	2356	c.1910G>C	c.(1909-1911)CGG>CCG	p.R637P		NM_005415	NP_005406	Q8WUM9	S20A1_HUMAN	solute carrier family 20 (phosphate	637	Extracellular (Potential).				phosphate metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to plasma membrane	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity			ovary(2)	2						GGCTGGCTCCGGTCCAAGAAG	0.498													4	85					0	0	3.59834e-05	0	0
MARCO	8685	broad.mit.edu	37	2	119727692	119727692	+	Missense_Mutation	SNP	C	A	A	rs144080988	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:119727692C>A	uc002tln.1	+	3	334	c.202C>A	c.(202-204)CTG>ATG	p.L68M	MARCO_uc010yyf.1_Translation_Start_Site	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	68	Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						GGGCCCAGTTCTGAATCTGCA	0.542													8	56					0.000978159	0.00917326	0.000978159	1	0
C1QL2	165257	broad.mit.edu	37	2	119915809	119915809	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:119915809G>T	uc002tlo.2	-	1	663	c.37C>A	c.(37-39)CTG>ATG	p.L13M		NM_182528	NP_872334	Q7Z5L3	C1QL2_HUMAN	complement component 1, q subcomponent-like 2	13						collagen				pancreas(1)	1						GCCGCCTGCAGCAGCAGCGGC	0.756										HNSCC(49;0.14)			4	12					6.5536e-12	8.75845e-11	0.000157383	1	0
TMEM37	140738	broad.mit.edu	37	2	120194864	120194864	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:120194864G>C	uc002tly.2	+	2	455	c.421G>C	c.(421-423)GGG>CGG	p.G141R		NM_183240	NP_899063	Q8WXS4	CCGL_HUMAN	transmembrane protein 37	141	Helical; (Potential).					integral to membrane	calcium channel activity|voltage-gated ion channel activity			breast(1)	1						CTCCTCCGGCGGGCTCCTGGG	0.547													4	227					0	0	0.00024832	0	0
SCTR	6344	broad.mit.edu	37	2	120206299	120206299	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:120206299G>T	uc002tma.2	-	10	1205	c.979C>A	c.(979-981)CAA>AAA	p.Q327K	SCTR_uc002tlz.2_Missense_Mutation_p.Q149K	NM_002980	NP_002971	P47872	SCTR_HUMAN	secretin receptor precursor	327	Cytoplasmic (Potential).				digestion|excretion	integral to plasma membrane	secretin receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3					Secretin(DB00021)	CTTGTTTCTTGGGTTCTAAGT	0.328													6	47					0.000978159	0.00917326	0.000978159	1	0
CLASP1	23332	broad.mit.edu	37	2	122125401	122125401	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:122125401G>C	uc002tnc.2	-	34	4039	c.3649C>G	c.(3649-3651)CGC>GGC	p.R1217G	CLASP1_uc010yyv.1_Missense_Mutation_p.R263G|CLASP1_uc002tmz.2_Missense_Mutation_p.R302G|CLASP1_uc002tna.2_Missense_Mutation_p.R263G|CLASP1_uc010yyw.1_RNA|CLASP1_uc002tnb.2_RNA|CLASP1_uc010yyx.1_RNA|CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Missense_Mutation_p.R1158G|CLASP1_uc010yza.1_Missense_Mutation_p.R1150G|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_RNA|CLASP1_uc002tmy.2_Missense_Mutation_p.R53G|CLASP1_uc002tnf.2_Missense_Mutation_p.R119G	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	1217					axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					CCCCCATCGCGGGACACCTGC	0.542													3	61					0	0	6.4e-05	0	0
IWS1	55677	broad.mit.edu	37	2	128281350	128281350	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:128281350G>C	uc002ton.2	-	2	355	c.52C>G	c.(52-54)CCA>GCA	p.P18A	IWS1_uc010yzl.1_RNA|IWS1_uc010fma.2_Intron	NM_017969	NP_060439	Q96ST2	IWS1_HUMAN	IWS1 homolog	18					transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0735)		TCCTGTACTGGGGTAGCACCA	0.418													5	136					0	0	0.000442599	0	0
UGGT1	56886	broad.mit.edu	37	2	128892501	128892501	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:128892501G>A	uc002tps.2	+	15	1727	c.1549G>A	c.(1549-1551)GCT>ACT	p.A517T	UGGT1_uc010fme.1_Missense_Mutation_p.A392T|UGGT1_uc002tpr.2_Missense_Mutation_p.A493T	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	517					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						GATGAACACAGCTGAGATGTT	0.338													7	51					0	0	0.000157383	0	0
POTEF	728378	broad.mit.edu	37	2	130877893	130877893	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:130877893G>A	uc010fmh.2	-	3	596	c.196C>T	c.(196-198)CGC>TGC	p.R66C		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	66						cell cortex	ATP binding			skin(3)|ovary(2)	5						AAGCAGTGGCGGCACCACTTG	0.602													6	178					0	0	0.00010058	0	0
Unknown	0	broad.mit.edu	37	2	133066860	133066860	+	RNA	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:133066860C>A	uc002ttk.1	+	2		c.59C>A								Homo sapiens cDNA FLJ37280 fis, clone BRAMY2012881.																		CAGAATCCTGCCCTTTCCAAA	0.368													6	210					0.000442599	0.00445669	0.000442599	1	0
GPR39	2863	broad.mit.edu	37	2	133175422	133175422	+	Silent	SNP	C	G	G	rs36051533		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:133175422C>G	uc002ttl.2	+	1	1276	c.807C>G	c.(805-807)TCC>TCG	p.S269S		NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	269	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						TGAGGAAGTCCGAGAGCGAAG	0.612													4	97					0	0	3.59834e-05	0	0
ZRANB3	84083	broad.mit.edu	37	2	136029454	136029454	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:136029454G>C	uc002tum.2	-	10	1207	c.1090C>G	c.(1090-1092)CGT>GGT	p.R364G	ZRANB3_uc002tuk.2_5'UTR|ZRANB3_uc002tul.2_Missense_Mutation_p.R364G|ZRANB3_uc002tun.1_Missense_Mutation_p.R304G	NM_032143	NP_115519	Q5FWF4	ZRAB3_HUMAN	zinc finger, RAN-binding domain containing 3	364	Helicase C-terminal.					intracellular	ATP binding|DNA binding|endonuclease activity|helicase activity|zinc ion binding			lung(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.135)		CTAATGTAACGAGTCTAGCAT	0.368													3	75					0	0	0.000602214	0	0
SPOPL	339745	broad.mit.edu	37	2	139316692	139316692	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:139316692G>T	uc002tvh.2	+	6	981	c.581G>T	c.(580-582)TGG>TTG	p.W194L		NM_001001664	NP_001001664	Q6IQ16	SPOPL_HUMAN	speckle-type POZ protein-like	194						nucleus				skin(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0296)		GGTAATCTCTGGGAAAACACA	0.383													7	119					0.000274275	0.00290969	0.000274275	1	0
ACVR2A	92	broad.mit.edu	37	2	148654054	148654054	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:148654054G>A	uc002twg.2	+	3	509	c.240G>A	c.(238-240)CTG>CTA	p.L80L	ACVR2A_uc010zbn.1_5'UTR|ACVR2A_uc002twh.2_Silent_p.L80L	NM_001616	NP_001607	P27037	AVR2A_HUMAN	activin A receptor, type IIA precursor	80	Extracellular (Potential).				activin receptor signaling pathway|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of erythrocyte differentiation|positive regulation of osteoblast differentiation|positive regulation of protein phosphorylation	cytoplasm|inhibin-betaglycan-ActRII complex|integral to plasma membrane	ATP binding|coreceptor activity|inhibin beta-A binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			stomach(8)|large_intestine(2)|lung(1)|breast(1)|kidney(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.0969)		GTTGTTGGCTGGATGATATCA	0.373													7	76					0	0	0.000274275	0	0
MBD5	55777	broad.mit.edu	37	2	149226825	149226825	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:149226825C>T	uc002twm.3	+	9	2301	c.1313C>T	c.(1312-1314)CCA>CTA	p.P438L	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.P438L|MBD5_uc002twn.1_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	438						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		TCCCCTTCTCCAGTGACATCC	0.483													5	34					0	0	8.12818e-05	0	0
EPC2	26122	broad.mit.edu	37	2	149528937	149528937	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:149528937C>G	uc010zbt.1	+	10	1728	c.1701C>G	c.(1699-1701)ACC>ACG	p.T567T		NM_015630	NP_056445	Q52LR7	EPC2_HUMAN	enhancer of polycomb homolog 2	567					chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)|breast(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0516)		TATTGAACACCAGCAAGAATG	0.353													4	155					0	0	0.000602214	0	0
LYPD6	130574	broad.mit.edu	37	2	150294297	150294297	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:150294297C>G	uc002twy.2	+	2	270	c.75C>G	c.(73-75)TCC>TCG	p.S25S	LYPD6_uc010fnt.2_RNA|LYPD6_uc002twz.2_RNA|LYPD6_uc002txa.2_Silent_p.S25S	NM_194317	NP_919298	Q86Y78	LYPD6_HUMAN	LY6/PLAUR domain containing 6 precursor	25						extracellular region					0				BRCA - Breast invasive adenocarcinoma(221;0.0667)		CTGCTCAGTCCCGAGACTTCA	0.483													3	45					0	0	0.00024832	0	0
RIF1	55183	broad.mit.edu	37	2	152322564	152322564	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:152322564C>G	uc002txm.2	+	30	6660	c.6530C>G	c.(6529-6531)CCG>CGG	p.P2177R	RIF1_uc002txl.2_Missense_Mutation_p.P2177R|RIF1_uc002txn.2_Missense_Mutation_p.P2177R|RIF1_uc002txo.2_Missense_Mutation_p.P2177R|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	2177	Interaction with condensed chromosomes in telophase.				cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		TTGGCTTCTCCGTCTACGAGC	0.423													4	79					0	0	3.59834e-05	0	0
FMNL2	114793	broad.mit.edu	37	2	153431698	153431698	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:153431698G>T	uc002tye.2	+	7	1012	c.645G>T	c.(643-645)GTG>GTT	p.V215V		NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	215	GBD/FH3.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						CAAGATTAGTGAGTAAGAAAG	0.323													5	32					1.06961e-07	1.39386e-06	0.000157383	1	0
GALNT5	11227	broad.mit.edu	37	2	158152206	158152206	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:158152206G>A	uc002tzg.2	+	4	2028	c.1773G>A	c.(1771-1773)GTG>GTA	p.V591V	GALNT5_uc010zci.1_RNA	NM_014568	NP_055383	Q7Z7M9	GALT5_HUMAN	N-acetylgalactosaminyltransferase 5	591	Catalytic subdomain A.|Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(3)|skin(1)	4						ATTCTCATGTGGAATGTAACG	0.358													6	201					0	0	8.12818e-05	0	0
BAZ2B	29994	broad.mit.edu	37	2	160289875	160289875	+	Splice_Site	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:160289875C>A	uc002uao.2	-	9	1646	c.1294_splice	c.e9-1	p.E432_splice	BAZ2B_uc002uap.2_Splice_Site_p.E430_splice|BAZ2B_uc002uas.1_Intron|BAZ2B_uc002uaq.1_Splice_Site_p.E360_splice|BAZ2B_uc002uar.1_Missense_Mutation_p.Q4H	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						TATATTGTTCCTGTTGAAACA	0.318													7	123					8.12818e-05	0.000938396	8.12818e-05	1	0
KCNH7	90134	broad.mit.edu	37	2	163302627	163302627	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:163302627G>C	uc002uch.1	-	7	1667	c.1455C>G	c.(1453-1455)CCC>CCG	p.P485P	KCNH7_uc002uci.2_Silent_p.P478P	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	485	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CTATTTTGGCGGGATCACTTA	0.358													3	51					0	0	0.00024832	0	0
GRB14	2888	broad.mit.edu	37	2	165351010	165351010	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:165351010C>G	uc002ucl.2	-	13	1948	c.1407G>C	c.(1405-1407)CAG>CAC	p.Q469H	GRB14_uc010zcv.1_Missense_Mutation_p.Q382H|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	469	SH2.				blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						TGGGGTTACTCTGACTATCCC	0.318													3	82					0	0	0.000602214	0	0
SCN2A	6326	broad.mit.edu	37	2	166210701	166210701	+	Splice_Site	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:166210701G>C	uc002udc.2	+	17	3210	c.2920_splice	c.e17-1	p.V974_splice	SCN2A_uc002udd.2_Splice_Site_p.V974_splice|SCN2A_uc002ude.2_Splice_Site_p.V974_splice	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha						myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	CTGTGTTTCAGGTTCTGAACC	0.373													4	259					0	0	3.59834e-05	0	0
XIRP2	129446	broad.mit.edu	37	2	168100444	168100444	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:168100444C>G	uc002udx.2	+	8	2560	c.2542C>G	c.(2542-2544)CAG>GAG	p.Q848E	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.Q673E|XIRP2_uc010fpq.2_Missense_Mutation_p.Q626E|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	673	Xin 9.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GTTTGAAACCCAGCCATTAGA	0.373													4	101					0	0	3.59834e-05	0	0
LRP2	4036	broad.mit.edu	37	2	170135891	170135891	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:170135891G>C	uc002ues.2	-	12	1769	c.1556C>G	c.(1555-1557)CCA>CGA	p.P519R	LRP2_uc010zdf.1_Missense_Mutation_p.P519R	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	519	LDL-receptor class B 2.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CCCAACAGTTGGGTCCACGGC	0.403													4	65					0	0	0.00024832	0	0
KBTBD10	10324	broad.mit.edu	37	2	170377373	170377373	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:170377373G>T	uc002ueu.1	+	5	1642	c.1565G>T	c.(1564-1566)TGG>TTG	p.W522L	KBTBD10_uc010zdh.1_Missense_Mutation_p.W460L	NM_006063	NP_006054	O60662	KBTBA_HUMAN	kelch repeat and BTB (POZ) domain containing 10	522	Kelch 4.				striated muscle contraction	centrosome|nucleolus|plasma membrane|pseudopodium|ruffle					0						ATACCTAGATGGGATGTAATG	0.333													6	91					0.000442599	0.00445669	0.000442599	1	0
SSB	6741	broad.mit.edu	37	2	170664991	170664991	+	Splice_Site	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:170664991G>T	uc002ufk.2	+	7	662	c.555_splice	c.e7-1	p.K185_splice	SSB_uc002ufl.2_Splice_Site_p.K185_splice|SSB_uc002ufm.2_Splice_Site_p.K185_splice	NM_003142	NP_003133	P05455	LA_HUMAN	autoantigen La						histone mRNA metabolic process|tRNA modification	nucleus|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding|tRNA binding			skin(3)|pancreas(1)	4						GTGTTCTTTAGGGACGATTAC	0.338													9	174					3.07112e-06	3.84493e-05	0.000978159	1	0
UBR3	130507	broad.mit.edu	37	2	170885889	170885889	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:170885889G>C	uc010zdi.1	+	31	4487	c.4487G>C	c.(4486-4488)CGG>CCG	p.R1496P	UBR3_uc002ufr.3_RNA|UBR3_uc010fqa.2_Missense_Mutation_p.R317P|UBR3_uc002uft.3_Missense_Mutation_p.R353P|UBR3_uc010zdj.1_Missense_Mutation_p.R187P|UBR3_uc002ufu.3_Missense_Mutation_p.R2P	NM_172070	NP_742067	Q6ZT12	UBR3_HUMAN	E3 ubiquitin-protein ligase UBR3	1496					sensory perception of smell|suckling behavior|ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0						TTGCACATGCGGCTTTATAGC	0.338													4	63					0	0	3.59834e-05	0	0
ITGA6	3655	broad.mit.edu	37	2	173341207	173341207	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:173341207G>T	uc002uhp.1	+	9	1557	c.1354G>T	c.(1354-1356)GTT>TTT	p.V452F	ITGA6_uc010zdy.1_Missense_Mutation_p.V333F|ITGA6_uc002uho.1_Missense_Mutation_p.V452F|ITGA6_uc010fqm.1_Missense_Mutation_p.V98F	NM_001079818	NP_001073286	P23229	ITA6_HUMAN	integrin alpha chain, alpha 6 isoform a	491	Extracellular (Potential).|FG-GAP 7.				blood coagulation|cell adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter	integrin complex	protein binding|receptor activity			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0979)			TGATGTTGCTGTTGGTTCCCT	0.368													6	101					0.000157383	0.00173811	0.000157383	1	0
ITGA6	3655	broad.mit.edu	37	2	173368867	173368867	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:173368867C>A	uc002uhp.1	+	25	3366	c.3163C>A	c.(3163-3165)CAT>AAT	p.H1055N	ITGA6_uc010zdy.1_3'UTR|ITGA6_uc002uho.1_3'UTR|ITGA6_uc010fqm.1_3'UTR	NM_001079818	NP_001073286	P23229	ITA6_HUMAN	integrin alpha chain, alpha 6 isoform a	1094	Cytoplasmic (Potential).				blood coagulation|cell adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter	integrin complex	protein binding|receptor activity			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0979)			TCCCCGATACCATGCTGTAAG	0.383													5	11					8.12818e-05	0.000938396	8.12818e-05	1	0
RAPGEF4	11069	broad.mit.edu	37	2	173891400	173891400	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:173891400G>T	uc002uhv.3	+	24	2541	c.2354G>T	c.(2353-2355)TGG>TTG	p.W785L	RAPGEF4_uc002uhw.3_Missense_Mutation_p.W641L	NM_007023	NP_008954	Q8WZA2	RPGF4_HUMAN	Rap guanine nucleotide exchange factor (GEF) 4	785	Ras-GEF.				blood coagulation|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of insulin secretion|regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex|membrane fraction|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity|Ras GTPase binding|Ras guanyl-nucleotide exchange factor activity			large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.194)			ATTTATGATTGGGAACTCTTC	0.438													6	89					0.000157383	0.00173811	0.000157383	1	0
TTN	7273	broad.mit.edu	37	2	179411921	179411921	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:179411921C>G	uc010zfg.1	-	289	86851	c.86627G>C	c.(86626-86628)TGG>TCG	p.W28876S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.W22571S|TTN_uc010zfi.1_Missense_Mutation_p.W22504S|TTN_uc010zfj.1_Missense_Mutation_p.W22379S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29803							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTCTCAACCCAGTAGCCAAT	0.443													4	150					0	0	3.59834e-05	0	0
TTN	7273	broad.mit.edu	37	2	179414406	179414406	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:179414406G>C	uc010zfg.1	-	287	84563	c.84339C>G	c.(84337-84339)GCC>GCG	p.A28113A	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.A21808A|TTN_uc010zfi.1_Silent_p.A21741A|TTN_uc010zfj.1_Silent_p.A21616A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29040							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTAGTTTAATGGCAGTGTAAC	0.433													5	70					0	0	0.000602214	0	0
TTN	7273	broad.mit.edu	37	2	179456117	179456117	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:179456117C>G	uc010zfg.1	-	253	52855	c.52631G>C	c.(52630-52632)TGG>TCG	p.W17544S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.W11239S|TTN_uc010zfi.1_Missense_Mutation_p.W11172S|TTN_uc010zfj.1_Missense_Mutation_p.W11047S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18471							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCGGTTGTCCACTTTGCAGT	0.428													4	127					0	0	3.59834e-05	0	0
TTN	7273	broad.mit.edu	37	2	179468971	179468971	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:179468971C>T	uc010zfg.1	-	231	46963	c.46739G>A	c.(46738-46740)GGA>GAA	p.G15580E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G9275E|TTN_uc010zfi.1_Missense_Mutation_p.G9208E|TTN_uc010zfj.1_Missense_Mutation_p.G9083E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16507							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCACTGATTCCATATTTATT	0.388													4	40					0	0	0.00024832	0	0
TTN	7273	broad.mit.edu	37	2	179639101	179639101	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:179639101C>T	uc010zfg.1	-	30	7114	c.6890G>A	c.(6889-6891)GGA>GAA	p.G2297E	TTN_uc010zfh.1_Missense_Mutation_p.G2251E|TTN_uc010zfi.1_Missense_Mutation_p.G2251E|TTN_uc010zfj.1_Missense_Mutation_p.G2251E|TTN_uc002unb.2_Missense_Mutation_p.G2297E|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2297							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATACCATTTTCCTTCTATATT	0.393													10	74					0	0	0.000442599	0	0
TTN	7273	broad.mit.edu	37	2	179655492	179655492	+	Silent	SNP	C	G	G	rs138560523		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:179655492C>G	uc010zfg.1	-	11	1967	c.1743G>C	c.(1741-1743)CCG>CCC	p.P581P	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002unb.2_Silent_p.P581P|TTN_uc010frg.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	581							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTGAGCTCCCGGGACTGTTT	0.413													4	92					0	0	0.000602214	0	0
CWC22	57703	broad.mit.edu	37	2	180810168	180810168	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:180810168G>T	uc010frh.1	-	20	2715	c.2415C>A	c.(2413-2415)GAC>GAA	p.D805E	CWC22_uc002uno.2_Missense_Mutation_p.D327E|CWC22_uc002unp.2_Missense_Mutation_p.D805E	NM_020943	NP_065994	Q9HCG8	CWC22_HUMAN	CWC22 spliceosome-associated protein homolog	805						catalytic step 2 spliceosome	protein binding|RNA binding				0						GCATTTCTTGGTCTCTGTCAT	0.368													7	278					0.000274275	0.00290969	0.000274275	1	0
PDE1A	5136	broad.mit.edu	37	2	183066203	183066203	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:183066203C>A	uc002uos.2	-	11	1220	c.1136G>T	c.(1135-1137)CGG>CTG	p.R379L	PDE1A_uc010zfp.1_Missense_Mutation_p.R275L|PDE1A_uc002uoq.1_Missense_Mutation_p.R379L|PDE1A_uc010zfq.1_Missense_Mutation_p.R379L|PDE1A_uc002uor.2_Missense_Mutation_p.R363L|PDE1A_uc002uou.2_Missense_Mutation_p.R345L	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	379	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			CATGGTCCACCGATAATGCAG	0.488													7	81					0.000442599	0.00445669	0.000442599	1	0
FAM171B	165215	broad.mit.edu	37	2	187618666	187618666	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:187618666G>C	uc002ups.2	+	6	1014	c.902G>C	c.(901-903)TGG>TCG	p.W301S	FAM171B_uc002upr.1_Missense_Mutation_p.W301S	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	301	Extracellular (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						TTAGGTGCTTGGGTAAATCAT	0.373													3	56					0	0	0.00024832	0	0
COL3A1	1281	broad.mit.edu	37	2	189864211	189864211	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:189864211C>G	uc002uqj.1	+	31	2254	c.2137C>G	c.(2137-2139)CCT>GCT	p.P713A		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	713	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TGCTGGTCCTCCTGGGCCACC	0.468													3	82					0	0	3.59834e-05	0	0
OSGEPL1	64172	broad.mit.edu	37	2	190626165	190626166	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:190626165_190626166GG>TT	uc002uqz.1	-	2	735_736	c.201_202CC>AA	c.(199-204)TCCCAA>TCAAAA	p.Q68K	OSGEPL1_uc002ura.1_RNA|OSGEPL1_uc010zfy.1_Missense_Mutation_p.Q68K	NM_022353	NP_071748	Q9H4B0	OSGP2_HUMAN	O-sialoglycoprotein endopeptidase-like 1	68					proteolysis|tRNA processing		metalloendopeptidase activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0293)|all cancers(119;0.0831)			ACTTCAGTTTGGGAATGTATTG	0.312													10	174					0	0	6.4e-05	0	0
MSTN	2660	broad.mit.edu	37	2	190926978	190926978	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:190926978C>G	uc002urp.2	-	1	478	c.345G>C	c.(343-345)ACG>ACC	p.T115T		NM_005259	NP_005250	O14793	GDF8_HUMAN	myostatin precursor	115					muscle organ development|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000742)|Epithelial(96;0.0121)|all cancers(119;0.0395)			TGATTGTTTCCGTTGTAGCGT	0.433													4	43					0	0	0.000602214	0	0
MFSD6	54842	broad.mit.edu	37	2	191364932	191364932	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:191364932G>C	uc002urz.2	+	8	2688	c.2364G>C	c.(2362-2364)GCG>GCC	p.A788A	MFSD6_uc010zge.1_Silent_p.A250A	NM_017694	NP_060164	Q6ZSS7	MFSD6_HUMAN	major facilitator superfamily domain containing	788					transmembrane transport	integral to membrane				ovary(2)	2						AGCTGGCCGCGGGAGGACACT	0.652													4	32					0	0	3.59834e-05	0	0
HECW2	57520	broad.mit.edu	37	2	197171332	197171332	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:197171332G>A	uc002utm.1	-	13	2877	c.2694C>T	c.(2692-2694)TTC>TTT	p.F898F	HECW2_uc002utl.1_Silent_p.F542F	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	898	Interaction with TP73.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						TCTCCCGTCGGAAATCTAGAT	0.483													11	43					0	0	0.000978159	0	0
ANKRD44	91526	broad.mit.edu	37	2	197870625	197870625	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:197870625C>G	uc002uua.1	-	21	2142	c.2065G>C	c.(2065-2067)GGA>CGA	p.G689R	ANKRD44_uc002utz.3_Missense_Mutation_p.G421R	NM_153697	NP_710181	Q8N8A2	ANR44_HUMAN	ankyrin repeat domain 44	714	ANK 21.						protein binding			ovary(4)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.246)			TCCTCGTGTCCTGTCATAATC	0.458													5	140					0	0	0.000157383	0	0
SF3B1	23451	broad.mit.edu	37	2	198281595	198281595	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:198281595C>G	uc002uue.2	-	6	584	c.536G>C	c.(535-537)GGA>GCA	p.G179A	SF3B1_uc010fsk.1_RNA	NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	179					nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			TTTTAGTTCTCCAGCTTTAGC	0.433													4	214					0	0	0.00024832	0	0
COQ10B	80219	broad.mit.edu	37	2	198327370	198327370	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:198327370G>T	uc002uuh.1	+	3	416	c.362G>T	c.(361-363)TGT>TTT	p.C121F	COQ10B_uc010fsl.1_Missense_Mutation_p.C93F	NM_025147	NP_079423	Q9H8M1	CQ10B_HUMAN	coenzyme Q10 homolog B precursor	121						mitochondrial inner membrane					0			Epithelial(96;0.231)|OV - Ovarian serous cystadenocarcinoma(117;0.246)			TCTGGATATTGTAAAACAAGA	0.353													6	147					0.000978159	0.00917326	0.000978159	1	0
BZW1	9689	broad.mit.edu	37	2	201677930	201677930	+	Splice_Site	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:201677930G>C	uc010zhg.1	+	2	139	c.87_splice	c.e2-1	p.G29_splice	BZW1_uc002uwb.1_Splice_Site|BZW1_uc002uwc.2_Splice_Site|BZW1_uc010zhh.1_5'Flank	NM_014670	NP_055485	Q7L1Q6	BZW1_HUMAN	basic leucine zipper and W2 domains 1						regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm	protein binding				0						TCCTTTCCTAGGGTGTCTTTT	0.323													4	92					0	0	0.00024832	0	0
FAM126B	285172	broad.mit.edu	37	2	201857033	201857033	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:201857033G>T	uc002uws.3	-	10	990	c.802C>A	c.(802-804)CAG>AAG	p.Q268K	FAM126B_uc002uwu.2_Missense_Mutation_p.Q186K|FAM126B_uc002uwv.2_Missense_Mutation_p.Q268K	NM_173822	NP_776183	Q8IXS8	F126B_HUMAN	hypothetical protein LOC285172	268						intracellular				ovary(1)	1						AGCTCTAGCTGGGCTCTATAA	0.333													8	159					0.000442599	0.00445669	0.000442599	1	0
ALS2	57679	broad.mit.edu	37	2	202588162	202588162	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:202588162C>G	uc002uyo.2	-	22	3871	c.3515G>C	c.(3514-3516)GGG>GCG	p.G1172A	ALS2_uc002uyp.3_Missense_Mutation_p.G1172A|ALS2_uc010ftl.2_RNA	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	1172	MORN 5.				cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						ATACTTTTCCCCCCTGCACAG	0.418													4	137					0	0	0.00024832	0	0
CDK15	65061	broad.mit.edu	37	2	202677264	202677264	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:202677264C>A	uc002uyt.2	+	4	476	c.427C>A	c.(427-429)CCA>ACA	p.P143T	CDK15_uc010ftm.2_Missense_Mutation_p.P8T|CDK15_uc002uys.2_Missense_Mutation_p.P92T|CDK15_uc010ftn.1_Missense_Mutation_p.P92T|CDK15_uc010fto.1_Missense_Mutation_p.P143T	NM_139158	NP_631897	Q96Q40	CDK15_HUMAN	PFTAIRE protein kinase 2	143	Protein kinase.						ATP binding|cyclin-dependent protein kinase activity|metal ion binding|protein binding			breast(2)|ovary(1)|lung(1)|kidney(1)	5					Adenosine triphosphate(DB00171)	GGAAGGAGTCCCATTTACAGC	0.408													8	127					0.000442599	0.00445669	0.000442599	1	0
BMPR2	659	broad.mit.edu	37	2	203420696	203420696	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:203420696C>G	uc002uzf.3	+	12	3456	c.2308C>G	c.(2308-2310)CGG>GGG	p.R770G	BMPR2_uc010ftr.2_Intron	NM_001204	NP_001195	Q13873	BMPR2_HUMAN	bone morphogenetic protein receptor type II	770	Cytoplasmic (Potential).				anterior/posterior pattern formation|BMP signaling pathway|cellular response to starvation|lung alveolus development|mesoderm formation|negative regulation of cell growth|negative regulation of systemic arterial blood pressure|negative regulation of vasoconstriction|positive regulation of BMP signaling pathway|positive regulation of bone mineralization|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of epithelial cell migration|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|regulation of lung blood pressure|transcription from RNA polymerase II promoter|vascular endothelial growth factor receptor signaling pathway	integral to plasma membrane	ATP binding|metal ion binding|transforming growth factor beta receptor activity			ovary(4)|breast(2)|large_intestine(1)|stomach(1)|pancreas(1)	9						AAAAGAGCCCCGGCTAAAATT	0.443													4	119					0	0	0.00024832	0	0
FAM117B	150864	broad.mit.edu	37	2	203630191	203630192	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:203630191_203630192CC>AA	uc010zhx.1	+	8	1484_1485	c.1474_1475CC>AA	c.(1474-1476)CCA>AAA	p.P492K		NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	492										ovary(1)	1						TCATGAAATCCCAGCCTTTTAT	0.391													11	307					0	0	6.4e-05	0	0
ICA1L	130026	broad.mit.edu	37	2	203684471	203684471	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:203684471G>C	uc002uzh.1	-	6	675	c.511C>G	c.(511-513)CAA>GAA	p.Q171E	ICA1L_uc002uzi.1_Missense_Mutation_p.Q171E|ICA1L_uc002uzj.2_Missense_Mutation_p.Q171E	NM_138468	NP_612477	Q8NDH6	ICA1L_HUMAN	islet cell autoantigen 1,69kDa-like isoform 1	171	AH.										0						TCCAGCTCTTGGGATACATCT	0.418													5	346					0	0	0.000157383	0	0
WDR12	55759	broad.mit.edu	37	2	203760836	203760836	+	Silent	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:203760836A>G	uc002uzl.2	-	6	1311	c.561T>C	c.(559-561)GGT>GGC	p.G187G	WDR12_uc010ftt.2_Silent_p.G187G	NM_018256	NP_060726	Q9GZL7	WDR12_HUMAN	WD repeat domain 12 protein	187	WD 3.|Sufficient for nucleolar localization.				cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						TTCCAGCATGACCTCTACAGC	0.378													4	416					0	0	0.000602214	0	0
NBEAL1	65065	broad.mit.edu	37	2	203914537	203914537	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:203914537G>T	uc002uzt.3	+	4	477	c.144G>T	c.(142-144)AGG>AGT	p.R48S	NBEAL1_uc002uzq.3_Missense_Mutation_p.R48S|NBEAL1_uc010zid.1_Intron|NBEAL1_uc010zie.1_RNA	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	48							binding			ovary(1)|skin(1)	2						TCTGTTGTAGGGTAGATGATA	0.388													8	189					0.000673444	0.00655963	0.000673444	1	0
NBEAL1	65065	broad.mit.edu	37	2	203974915	203974916	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:203974915_203974916CC>AG	uc002uzt.3	+	14	2238_2239	c.1905_1906CC>AG	c.(1903-1908)ACCCAT>ACAGAT	p.H636D		NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	636							binding			ovary(1)|skin(1)	2						CCTTTATTACCCATTCAGGTAT	0.381													12	398					0	0	6.4e-05	0	0
NBEAL1	65065	broad.mit.edu	37	2	203995055	203995055	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:203995055G>T	uc002uzt.3	+	24	3666	c.3333G>T	c.(3331-3333)TTG>TTT	p.L1111F		NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	1111							binding			ovary(1)|skin(1)	2						TTGGAATTTTGGACGTGCTCT	0.378													9	248					9.70103e-10	1.29088e-08	0.000673444	1	0
NBEAL1	65065	broad.mit.edu	37	2	204062079	204062079	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:204062079C>T	uc002uzt.3	+	47	7339	c.7006C>T	c.(7006-7008)CGT>TGT	p.R2336C	NBEAL1_uc002uzs.3_Intron	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2336							binding			ovary(1)|skin(1)	2						AAATCAGTATCGTTCTTTTAT	0.363													10	322					0	0	0.000442599	0	0
NBEAL1	65065	broad.mit.edu	37	2	204066384	204066384	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:204066384C>A	uc002uzt.3	+	49	7603	c.7270C>A	c.(7270-7272)CAA>AAA	p.Q2424K	NBEAL1_uc002uzs.3_Missense_Mutation_p.Q1065K	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2424							binding			ovary(1)|skin(1)	2						TAATAGCATTCAAGTGATGTC	0.373													12	396					0.00074312	0.00723323	0.00074312	1	0
ICOS	29851	broad.mit.edu	37	2	204820445	204820445	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:204820445C>G	uc002vam.2	+	2	212	c.145C>G	c.(145-147)CAG>GAG	p.Q49E	ICOS_uc010zip.1_Missense_Mutation_p.Q49E|ICOS_uc010fua.2_Missense_Mutation_p.Q49E	NM_012092	NP_036224	Q9Y6W8	ICOS_HUMAN	inducible T-cell co-stimulator precursor	49	Ig-like V-type.|Extracellular (Potential).				immune response|T cell costimulation	extracellular region					0						TGACATTGTCCAGCAATTTAA	0.368													4	80					0	0	3.59834e-05	0	0
NRP2	8828	broad.mit.edu	37	2	206588559	206588559	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:206588559C>G	uc002vaw.2	+	5	1506	c.715C>G	c.(715-717)CGT>GGT	p.R239G	NRP2_uc002vat.2_Missense_Mutation_p.R239G|NRP2_uc002vau.2_Missense_Mutation_p.R239G|NRP2_uc002vav.2_Missense_Mutation_p.R239G|NRP2_uc002vax.2_Missense_Mutation_p.R239G|NRP2_uc002vay.2_Missense_Mutation_p.R239G|NRP2_uc010fud.2_Missense_Mutation_p.R239G	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	239	Extracellular (Potential).|CUB 2.				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						CTCTGAACTTCGTTCATCGAC	0.517													4	42					0	0	0.00024832	0	0
C2orf67	151050	broad.mit.edu	37	2	211018610	211018610	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:211018610T>C	uc002vds.2	-	2	905	c.697A>G	c.(697-699)ATT>GTT	p.I233V	C2orf67_uc002vdt.2_Missense_Mutation_p.I233V|C2orf67_uc002vdw.2_Missense_Mutation_p.I233V|C2orf67_uc002vdy.1_Missense_Mutation_p.I233V|C2orf67_uc002vdv.2_Missense_Mutation_p.I233V|C2orf67_uc002vdx.1_Missense_Mutation_p.I233V	NM_152519	NP_689732	A0AUZ9	CB067_HUMAN	hypothetical protein LOC151050	233										ovary(3)	3		Renal(323;0.202)		Epithelial(149;0.00435)|Lung(261;0.0529)|LUSC - Lung squamous cell carcinoma(261;0.0551)|all cancers(144;0.0696)		CTAAGTAAAATTTTCTGTTTG	0.403													8	100					0	0	0.000157383	0	0
CPS1	1373	broad.mit.edu	37	2	211542626	211542626	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:211542626G>T	uc002vee.3	+	38	4552	c.4420G>T	c.(4420-4422)GCT>TCT	p.A1474S	CPS1_uc010fur.2_Missense_Mutation_p.A1480S|CPS1_uc010fus.2_Missense_Mutation_p.A1023S	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1474					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		CAAACTTTTTGCTGAAGCTGT	0.428													6	190					0.000442599	0.00445669	0.000442599	1	0
ERBB4	2066	broad.mit.edu	37	2	212570084	212570084	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:212570084G>C	uc002veg.1	-	10	1255	c.1157C>G	c.(1156-1158)CCA>CGA	p.P386R	ERBB4_uc002veh.1_Missense_Mutation_p.P386R|ERBB4_uc010zji.1_Missense_Mutation_p.P386R|ERBB4_uc010zjj.1_Missense_Mutation_p.P386R|ERBB4_uc010fut.1_Missense_Mutation_p.P386R	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	386	Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CAGTTTCTCTGGGTCTATGGC	0.323										TSP Lung(8;0.080)			5	172					0	0	0.000602214	0	0
ATIC	471	broad.mit.edu	37	2	216214334	216214334	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:216214334G>T	uc002vex.3	+	16	1909	c.1735G>T	c.(1735-1737)GGA>TGA	p.G579*	ATIC_uc010zjo.1_Nonsense_Mutation_p.G520*|ATIC_uc002vey.3_Nonsense_Mutation_p.G578*	NM_004044	NP_004035	P31939	PUR9_HUMAN	5-aminoimidazole-4-carboxamide ribonucleotide	579					IMP biosynthetic process|purine base metabolic process	cytosol	IMP cyclohydrolase activity|phosphoribosylaminoimidazolecarboxamide formyltransferase activity|protein homodimerization activity		ATIC/ALK(24)	haematopoietic_and_lymphoid_tissue(22)|ovary(2)|lung(2)|soft_tissue(2)|skin(1)	29		Renal(323;0.229)		Epithelial(149;2.02e-06)|all cancers(144;0.000316)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.0097)	Tetrahydrofolic acid(DB00116)	CGACGAACTGGGAATCATCCT	0.498			T	ALK	ALCL								9	111					0.000673444	0.00655963	0.000673444	1	0
SMARCAL1	50485	broad.mit.edu	37	2	217279629	217279629	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:217279629G>C	uc002vgc.3	+	3	532	c.202G>C	c.(202-204)GGT>CGT	p.G68R	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Missense_Mutation_p.G68R|SMARCAL1_uc010fvg.2_Missense_Mutation_p.G68R	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	68					chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		AGTGAGCCATGGTGTCATTTT	0.493									Schimke_Immuno-Osseous_Dysplasia				4	134					0	0	3.59834e-05	0	0
SMARCAL1	50485	broad.mit.edu	37	2	217329384	217329384	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:217329384C>A	uc002vgc.3	+	13	2465	c.2135C>A	c.(2134-2136)TCT>TAT	p.S712Y	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Missense_Mutation_p.S712Y|SMARCAL1_uc010fvg.2_Missense_Mutation_p.S690Y	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	712					chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		AAAATCCCATCTGTCATGTAA	0.373									Schimke_Immuno-Osseous_Dysplasia				7	117					0.000673444	0.00655963	0.000673444	1	0
USP37	57695	broad.mit.edu	37	2	219328090	219328090	+	Splice_Site	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:219328090C>A	uc002vie.2	-	22	2920	c.2467_splice	c.e22-1	p.E823_splice	USP37_uc010fvs.1_Splice_Site_p.E823_splice|USP37_uc010zkf.1_Splice_Site_p.E823_splice|USP37_uc002vif.2_Splice_Site_p.E823_splice|USP37_uc002vig.2_Splice_Site_p.E729_splice	NM_020935	NP_065986	Q86T82	UBP37_HUMAN	ubiquitin specific peptidase 37						ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(3)|ovary(1)|prostate(1)	5		Renal(207;0.0915)		Epithelial(149;1.08e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.00375)|Lung(261;0.00487)		CCCAAGCCTCCTAAAGGGAAA	0.318													8	185					0.000978159	0.00917326	0.000978159	1	0
USP37	57695	broad.mit.edu	37	2	219350454	219350454	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:219350454C>G	uc002vie.2	-	16	2056	c.1603G>C	c.(1603-1605)GAG>CAG	p.E535Q	USP37_uc010fvs.1_Missense_Mutation_p.E535Q|USP37_uc010zkf.1_Missense_Mutation_p.E535Q|USP37_uc002vif.2_Missense_Mutation_p.E535Q|USP37_uc002vig.2_Missense_Mutation_p.E463Q	NM_020935	NP_065986	Q86T82	UBP37_HUMAN	ubiquitin specific peptidase 37	535					ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(3)|ovary(1)|prostate(1)	5		Renal(207;0.0915)		Epithelial(149;1.08e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.00375)|Lung(261;0.00487)		CAAGAATACTCCAGTTCTTCG	0.328													6	256					0	0	8.12818e-05	0	0
RQCD1	9125	broad.mit.edu	37	2	219449406	219449406	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:219449406C>T	uc010zkh.1	+	4	392	c.392C>T	c.(391-393)CCC>CTC	p.P131L	RQCD1_uc002vih.1_Missense_Mutation_p.P131L|RQCD1_uc010zki.1_Missense_Mutation_p.P131L	NM_005444	NP_005435	Q92600	RCD1_HUMAN	RCD1 required for cell differentiation1 homolog	131					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|sex differentiation|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(1)|skin(1)	2		Renal(207;0.0915)		Epithelial(149;1.13e-06)|all cancers(144;0.000192)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AAAACACGTCCCTTTGAGTAT	0.423													19	234					0	0	0.000175454	0	0
RNF25	64320	broad.mit.edu	37	2	219529154	219529154	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:219529154G>A	uc002vit.2	-	10	994	c.906C>T	c.(904-906)TCC>TCT	p.S302S	RNF25_uc010fvw.2_Silent_p.S190S	NM_022453	NP_071898	Q96BH1	RNF25_HUMAN	ring finger protein 25	302					positive regulation of NF-kappaB transcription factor activity	cytosol|nucleus	NF-kappaB binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Renal(207;0.0474)		Epithelial(149;6.99e-07)|all cancers(144;0.000129)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GTGGCAAAGTGGATTGGACGG	0.557													10	96					0	0	0.00010058	0	0
RNF25	64320	broad.mit.edu	37	2	219529185	219529185	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:219529185G>A	uc002vit.2	-	10	963	c.875C>T	c.(874-876)GCA>GTA	p.A292V	RNF25_uc010fvw.2_Missense_Mutation_p.A180V	NM_022453	NP_071898	Q96BH1	RNF25_HUMAN	ring finger protein 25	292					positive regulation of NF-kappaB transcription factor activity	cytosol|nucleus	NF-kappaB binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Renal(207;0.0474)		Epithelial(149;6.99e-07)|all cancers(144;0.000129)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGATAGTTCTGCTGCAAGGGT	0.542													6	102					0	0	0.000157383	0	0
STK36	27148	broad.mit.edu	37	2	219563494	219563494	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:219563494T>C	uc002viu.2	+	26	3493	c.3227T>C	c.(3226-3228)CTG>CCG	p.L1076P	STK36_uc002viv.2_Missense_Mutation_p.L1055P|STK36_uc002viw.2_Missense_Mutation_p.L254P|STK36_uc002vix.2_Missense_Mutation_p.L121P	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	1076					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		GACCAGCCACTGTTGACCTCC	0.547													4	157					0	0	3.59834e-05	0	0
CYP27A1	1593	broad.mit.edu	37	2	219677416	219677416	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:219677416C>G	uc002viz.3	+	4	1222	c.788C>G	c.(787-789)CCC>CGC	p.P263R		NM_000784	NP_000775	Q02318	CP27A_HUMAN	cytochrome P450, family 27, subfamily A,	263					bile acid biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	cholestanetriol 26-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;9.48e-07)|all cancers(144;0.000171)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00981)	Cholecalciferol(DB00169)	TGGACTCGCCCCGTGCTGCCT	0.567													5	251					0	0	8.12818e-05	0	0
CCDC108	255101	broad.mit.edu	37	2	219900219	219900219	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:219900219G>T	uc002vjl.1	-	5	609	c.525C>A	c.(523-525)CTC>CTA	p.L175L	CCDC108_uc010zkp.1_Silent_p.L164L|CCDC108_uc010zkq.1_Silent_p.L110L|CCDC108_uc002vjn.2_Silent_p.L110L	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	175						integral to membrane	structural molecule activity	p.L175F(1)		ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TCATCTTCTGGAGTTTCAAGG	0.463													7	72					0.000442599	0.00445669	0.000442599	1	0
DOCK10	55619	broad.mit.edu	37	2	225706532	225706532	+	Missense_Mutation	SNP	G	C	C	rs113378246		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:225706532G>C	uc010fwz.1	-	23	2889	c.2650C>G	c.(2650-2652)CGC>GGC	p.R884G	DOCK10_uc002vob.2_Missense_Mutation_p.R878G	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	884	DHR-1.						GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		TTACAAGAGCGGATGAAATTT	0.398													4	144					0	0	8.12818e-05	0	0
RHBDD1	84236	broad.mit.edu	37	2	227731999	227731999	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:227731999G>C	uc002voi.2	+	3	652	c.531G>C	c.(529-531)TGG>TGC	p.W177C	RHBDD1_uc010fxc.2_Missense_Mutation_p.W177C	NM_032276	NP_115652	Q8TEB9	RHBD1_HUMAN	rhomboid domain containing 1	177						integral to membrane	serine-type endopeptidase activity			ovary(1)	1		Renal(207;0.023)|all_lung(227;0.13)|Esophageal squamous(248;0.23)|all_hematologic(139;0.248)		Epithelial(121;1.47e-11)|all cancers(144;1.52e-08)|Lung(261;0.0128)|LUSC - Lung squamous cell carcinoma(224;0.0175)		TTGCTTGTTGGGTCGAACTTG	0.398													5	167					0	0	8.12818e-05	0	0
COL4A4	1286	broad.mit.edu	37	2	227872152	227872152	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:227872152C>G	uc010zlt.1	-	47	5616	c.4962G>C	c.(4960-4962)ACG>ACC	p.T1654T		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1654	Collagen IV NC1.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CTGCTTTCACCGTTGTGAGCC	0.527													6	253					0	0	0.000157383	0	0
COL4A4	1286	broad.mit.edu	37	2	227924905	227924905	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:227924905C>A	uc010zlt.1	-	27	2765	c.2111G>T	c.(2110-2112)GGG>GTG	p.G704V		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	704	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GCCTTTATGCCCATCTGAACC	0.428													10	162					7.48243e-07	9.56199e-06	0.000442599	1	0
CCL20	6364	broad.mit.edu	37	2	228680196	228680196	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:228680196G>T	uc002vpl.2	+	2	173	c.103G>T	c.(103-105)GGA>TGA	p.G35*	CCL20_uc002vpm.2_Nonsense_Mutation_p.G34*	NM_004591	NP_004582	P78556	CCL20_HUMAN	chemokine (C-C motif) ligand 20 isoform 1	35					cell-cell signaling|chemotaxis|defense response to bacterium|immune response|inflammatory response|signal transduction	extracellular space	chemokine activity				0		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;7.3e-11)|all cancers(144;4.13e-08)|Lung(261;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0115)		CTGCTGTCTTGGATACACAGA	0.363													11	148					1.99824e-07	2.59546e-06	0.000566183	1	0
TRIP12	9320	broad.mit.edu	37	2	230654397	230654397	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:230654397G>C	uc002vpw.1	-	30	4509	c.4400C>G	c.(4399-4401)CCG>CGG	p.P1467R	TRIP12_uc002vpx.1_Missense_Mutation_p.P1515R|TRIP12_uc002vpy.1_Missense_Mutation_p.P1197R	NM_004238	NP_004229	Q14669	TRIPC_HUMAN	thyroid hormone receptor interactor 12	1467					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	proteasome complex	thyroid hormone receptor binding|ubiquitin-protein ligase activity			ovary(4)|lung(2)|breast(1)|central_nervous_system(1)|skin(1)	9		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.126)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;4.76e-13)|all cancers(144;4.34e-10)|LUSC - Lung squamous cell carcinoma(224;0.00864)|Lung(119;0.0116)		ATCTAATGACGGGTCTTCAAA	0.353													4	174					0	0	8.12818e-05	0	0
NGEF	25791	broad.mit.edu	37	2	233748054	233748054	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:233748054C>G	uc002vts.2	-	12	1972	c.1724G>C	c.(1723-1725)CGG>CCG	p.R575P	NGEF_uc010zmm.1_Missense_Mutation_p.R298P|NGEF_uc010fyg.1_Missense_Mutation_p.R483P	NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	575	PH.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		GGTGGCCTCCCGGTCATCTGC	0.642													3	26					0	0	0.000602214	0	0
COL6A3	1293	broad.mit.edu	37	2	238245005	238245005	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:238245005G>A	uc002vwl.2	-	40	9023	c.8738C>T	c.(8737-8739)GCC>GTC	p.A2913V	COL6A3_uc002vwo.2_Missense_Mutation_p.A2707V|COL6A3_uc010znj.1_Missense_Mutation_p.A2306V|COL6A3_uc002vwj.2_Missense_Mutation_p.A294V	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2913	Nonhelical region.|Ala-rich.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TTTCGCAGGGGCCGGCTTTGC	0.572													6	162					0	0	3.59834e-05	0	0
COL6A3	1293	broad.mit.edu	37	2	238275473	238275473	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:238275473A>G	uc002vwl.2	-	11	5642	c.5357T>C	c.(5356-5358)GTT>GCT	p.V1786A	COL6A3_uc002vwo.2_Missense_Mutation_p.V1580A|COL6A3_uc010znj.1_Missense_Mutation_p.V1179A	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1786	VWFA 9.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TATCTTTCCAACCTCCTCCGA	0.562													6	62					0	0	3.59834e-05	0	0
PER2	8864	broad.mit.edu	37	2	239162018	239162018	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:239162018G>C	uc002vyc.2	-	19	2883	c.2646C>G	c.(2644-2646)CCC>CCG	p.P882P	PER2_uc010znv.1_Silent_p.P882P	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	882	Pro-rich.				circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		GGAGGTCCACGGGCACAGCAG	0.632													3	44					0	0	6.4e-05	0	0
ASB1	51665	broad.mit.edu	37	2	239353336	239353336	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:239353336C>T	uc002vyg.2	+	4	934	c.848C>T	c.(847-849)CCT>CTT	p.P283L		NM_001040445	NP_001035535	Q9Y576	ASB1_HUMAN	ankyrin repeat and SOCS box-containing protein	283					intracellular signal transduction|negative regulation of cytokine biosynthetic process						0		all_epithelial(40;2.65e-14)|Breast(86;7.61e-05)|Renal(207;0.00183)|all_lung(227;0.0283)|Ovarian(221;0.0365)|Lung NSC(271;0.0941)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;2.04e-26)|OV - Ovarian serous cystadenocarcinoma(60;4.5e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;2.88e-05)|Lung(119;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00644)		AAAGTGGACCCTGAGGCCTTG	0.498													12	77					0	0	0.000978159	0	0
KIF1A	547	broad.mit.edu	37	2	241676508	241676508	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:241676508C>G	uc002vzy.2	-	36	3822	c.3676G>C	c.(3676-3678)GGA>CGA	p.G1226R	KIF1A_uc010fzk.2_Missense_Mutation_p.G1327R|KIF1A_uc002vzz.1_Missense_Mutation_p.G1327R	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	1226					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		TGGATGTATCCGGAAGAGAGG	0.617													4	100					0	0	0.000602214	0	0
KIF1A	547	broad.mit.edu	37	2	241700716	241700716	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:241700716C>G	uc002vzy.2	-	23	2314	c.2168G>C	c.(2167-2169)CGG>CCG	p.R723P	KIF1A_uc010fzk.2_Missense_Mutation_p.R732P|KIF1A_uc002vzz.1_Missense_Mutation_p.R732P	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	723					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CAGCAGGTCCCGCAGAGACGT	0.607													3	64					0	0	0.000602214	0	0
PPP1R7	5510	broad.mit.edu	37	2	242099828	242099828	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:242099828C>A	uc002wat.1	+	6	531	c.516C>A	c.(514-516)GTC>GTA	p.V172V	PPP1R7_uc010fzm.1_Silent_p.V156V|PPP1R7_uc002war.2_Silent_p.V166V|PPP1R7_uc002was.2_Silent_p.V172V|PPP1R7_uc002wau.1_Silent_p.V129V|PPP1R7_uc002wav.1_Silent_p.V98V	NM_002712	NP_002703	Q15435	PP1R7_HUMAN	protein phosphatase 1, regulatory subunit 7	172	LRR 5.					cytoplasm|nucleus	protein binding|protein phosphatase type 1 regulator activity			ovary(3)	3		all_cancers(19;6.1e-33)|all_epithelial(40;1.07e-13)|Breast(86;0.000141)|Renal(207;0.00528)|all_lung(227;0.0446)|Ovarian(221;0.104)|Lung NSC(271;0.115)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.92e-32)|all cancers(36;5.35e-29)|OV - Ovarian serous cystadenocarcinoma(60;3.4e-14)|Kidney(56;4.23e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.24e-08)|BRCA - Breast invasive adenocarcinoma(100;3.56e-06)|Lung(119;0.000588)|LUSC - Lung squamous cell carcinoma(224;0.0048)|Colorectal(34;0.0137)|COAD - Colon adenocarcinoma(134;0.096)		TCTTCTTGGTCAACAATAAAA	0.408													5	82					2.7689e-08	3.63906e-07	8.12818e-05	1	0
SDCBP2	27111	broad.mit.edu	37	20	1293238	1293238	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:1293238G>A	uc002wev.3	-	6	682	c.553C>T	c.(553-555)CGG>TGG	p.R185W	SDCBP2_uc002weu.3_Missense_Mutation_p.R100W	NM_080489	NP_536737	Q9H190	SDCB2_HUMAN	syndecan binding protein 2 isoform a	185	PDZ 1.				intracellular signal transduction|intracellular transport|nervous system development	cytoplasm	protein C-terminus binding|protein heterodimerization activity|protein homodimerization activity			large_intestine(1)|skin(1)	2						CACCTGTCCCGAACCACCACG	0.632													10	46					0	0	0.000442599	0	0
NOP56	10528	broad.mit.edu	37	20	2633939	2633939	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:2633939G>C	uc002wgh.2	+	3	161	c.108G>C	c.(106-108)GTG>GTC	p.V36V	NOP56_uc010zpy.1_RNA|NOP56_uc002wgi.2_5'UTR|SNORD110_uc002wgj.2_5'Flank|SNORA51_uc002wgk.1_5'Flank|NOP56_uc002wgm.1_5'Flank|SNORD86_uc010gaq.1_5'Flank	NM_006392	NP_006383	O00567	NOP56_HUMAN	nucleolar protein 5A	36					rRNA processing	box C/D snoRNP complex|pre-snoRNP complex	protein binding|snoRNA binding			ovary(1)|pancreas(1)	2						AGGAGTCTGTGCTCAACCTGG	0.547													4	208					0	0	3.59834e-05	0	0
PTPRA	5786	broad.mit.edu	37	20	2944953	2944953	+	Silent	SNP	C	A	A	rs150442527		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:2944953C>A	uc010zqb.1	+	4	423	c.30C>A	c.(28-30)CTC>CTA	p.L10L	PTPRA_uc002whj.2_Silent_p.L10L|PTPRA_uc010zqc.1_Intron|PTPRA_uc002whk.2_Silent_p.L10L|PTPRA_uc010zqd.1_Silent_p.L21L|PTPRA_uc002whl.2_Silent_p.L10L|PTPRA_uc002whm.2_5'UTR|PTPRA_uc002whn.2_Silent_p.L10L			P18433	PTPRA_HUMAN	SubName: Full=cDNA FLJ60525, highly similar to Receptor-type tyrosine-protein phosphatase alpha (EC 3.1.3.48);	10					axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						TTGTTCTGCTCGGCAGTGGTC	0.398													5	155					0.000442599	0.00445669	0.000442599	1	0
UBOX5	22888	broad.mit.edu	37	20	3103990	3103990	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:3103990G>A	uc002whw.2	-	2	192	c.22C>T	c.(22-24)CCA>TCA	p.P8S	uc002whv.1_Intron|UBOX5_uc002whx.2_Missense_Mutation_p.P8S|UBOX5_uc002why.1_Missense_Mutation_p.P8S	NM_014948	NP_055763	O94941	RNF37_HUMAN	U-box domain containing 5 isoform a	8						nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2						CTGAACTGTGGGAGGCAAAGA	0.333													6	241					0	0	0.000157383	0	0
PANK2	80025	broad.mit.edu	37	20	3899433	3899433	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:3899433C>A	uc002wkc.2	+	6	1658	c.1652C>A	c.(1651-1653)TCG>TAG	p.S551*	PANK2_uc002wkb.2_Nonsense_Mutation_p.S260*|PANK2_uc002wkd.2_RNA|PANK2_uc002wke.2_Nonsense_Mutation_p.S260*|PANK2_uc002wkf.2_Nonsense_Mutation_p.S115*|MIR103-2AS_hsa-mir-103-2-as|MI0007262_5'Flank	NM_153638	NP_705902	Q9BZ23	PANK2_HUMAN	pantothenate kinase 2 isoform 1 preproprotein	551					cell death|coenzyme A biosynthetic process|pantothenate metabolic process	mitochondrial intermembrane space|nucleus	ATP binding|pantothenate kinase activity|protein binding				0						GCACTTTTTTCGGAACACGAG	0.443													7	289					0.000274275	0.00290969	0.000274275	1	0
SLC23A2	9962	broad.mit.edu	37	20	4913120	4913120	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:4913120G>C	uc002wlg.1	-	3	464	c.89C>G	c.(88-90)CCA>CGA	p.P30R	SLC23A2_uc010zqr.1_Missense_Mutation_p.P29R|SLC23A2_uc002wlh.1_Missense_Mutation_p.P30R|SLC23A2_uc002wli.2_Missense_Mutation_p.P29R|SLC23A2_uc002wlj.1_RNA	NM_005116	NP_005107	Q9UGH3	S23A2_HUMAN	solute carrier family 23 (nucleobase	30				P -> R (in Ref. 4; AAD11783).	L-ascorbic acid metabolic process|molecular hydrogen transport|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|transepithelial L-ascorbic acid transport	apical plasma membrane|integral to plasma membrane|membrane fraction	nucleobase transmembrane transporter activity|sodium-dependent L-ascorbate transmembrane transporter activity|sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2						GAAGAAAGCTGGGTGCTTTGC	0.403													4	123					0	0	3.59834e-05	0	0
CHGB	1114	broad.mit.edu	37	20	5904518	5904518	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:5904518C>T	uc002wmg.2	+	4	2034	c.1728C>T	c.(1726-1728)TTC>TTT	p.F576F	CHGB_uc010zqz.1_Silent_p.F259F	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	576						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						AAAAGCCCTTCTCTGAGGATG	0.498													11	74					0	0	0.000673444	0	0
MCM8	84515	broad.mit.edu	37	20	5948574	5948574	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:5948574G>T	uc002wmi.2	+	10	1503	c.1126G>T	c.(1126-1128)GGG>TGG	p.G376W	MCM8_uc002wmj.2_Missense_Mutation_p.G360W|MCM8_uc002wmk.2_Missense_Mutation_p.G376W|MCM8_uc002wml.2_Missense_Mutation_p.G376W|MCM8_uc010gbp.2_Missense_Mutation_p.G376W|MCM8_uc002wmm.2_5'Flank	NM_032485	NP_115874	Q9UJA3	MCM8_HUMAN	minichromosome maintenance complex component 8	376					cell cycle checkpoint|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|nucleoside-triphosphatase activity			skin(1)	1						TTCTGAGGATGGGTGTAAGCA	0.353													8	148					5.18039e-06	6.44204e-05	0.000157383	1	0
CRLS1	54675	broad.mit.edu	37	20	6012710	6012710	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:6012710C>A	uc002wmn.3	+	5	867	c.713C>A	c.(712-714)CCA>CAA	p.P238Q	CRLS1_uc010gbq.2_RNA|CRLS1_uc010gbr.2_Missense_Mutation_p.P139Q	NM_019095	NP_061968	Q9UJA2	CRLS1_HUMAN	cardiolipin synthase 1 isoform 1	238					phospholipid biosynthetic process	integral to membrane|mitochondrial inner membrane	phosphotransferase activity, for other substituted phosphate groups				0						AGGTTAAAACCAACATTCATC	0.328													10	281					2.17888e-05	0.000264662	0.000442599	1	0
PLCB4	5332	broad.mit.edu	37	20	9288501	9288501	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:9288501C>A	uc002wnf.2	+	3	176	c.40C>A	c.(40-42)CCC>ACC	p.P14T	PLCB4_uc010gbw.1_Missense_Mutation_p.P14T|PLCB4_uc010gbx.2_Missense_Mutation_p.P14T|PLCB4_uc002wne.2_Missense_Mutation_p.P14T	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	14					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						GAAGGAAGTTCCCTCCTTTTT	0.299													6	78					0.000673444	0.00655963	0.000673444	1	0
ISM1	140862	broad.mit.edu	37	20	13251353	13251353	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:13251353C>T	uc010gce.1	+	2	347	c.341C>T	c.(340-342)TCC>TTC	p.S114F	TASP1_uc010zri.1_Intron	NM_080826	NP_543016	B1AKI9	ISM1_HUMAN	isthmin 1 homolog precursor	114						extracellular region					0						CCAGATCTTTCCAAAGCTGAT	0.443													5	66					0	0	0.000602214	0	0
MACROD2	140733	broad.mit.edu	37	20	15967371	15967371	+	Splice_Site	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:15967371G>T	uc002wou.2	+	14	1250	c.986_splice	c.e14-1	p.G329_splice	MACROD2_uc002wot.2_Splice_Site_p.G329_splice|MACROD2_uc002woz.2_Splice_Site_p.G94_splice|MACROD2_uc002wpb.2_Splice_Site_p.G94_splice|MACROD2_uc002wpd.2_Splice_Site	NM_080676	NP_542407	A1Z1Q3	MACD2_HUMAN	MACRO domain containing 2 isoform 1												0		all_neural(2;0.0381)|Acute lymphoblastic leukemia(2;0.175)				GTTTTGAACAGGACAAGAGAA	0.338													8	94					0.000274275	0.00290969	0.000274275	1	0
ZNF133	7692	broad.mit.edu	37	20	18296005	18296005	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:18296005C>G	uc010gcq.2	+	5	815	c.510C>G	c.(508-510)CCC>CCG	p.P170P	ZNF133_uc010zrv.1_Silent_p.P173P|ZNF133_uc010zrw.1_Silent_p.P107P|ZNF133_uc010gcr.2_Silent_p.P170P|ZNF133_uc010zrx.1_Silent_p.P75P|ZNF133_uc002wql.3_Silent_p.P169P|ZNF133_uc010gcs.2_Silent_p.P169P|ZNF133_uc010zry.1_Silent_p.P75P|ZNF133_uc002wqm.2_Silent_p.P170P	NM_003434	NP_003425	P52736	ZN133_HUMAN	zinc finger protein 133	170						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)	2						CCAGGCCACCCCAGAGGCAGC	0.562													4	135					0	0	3.59834e-05	0	0
SLC24A3	57419	broad.mit.edu	37	20	19677525	19677525	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:19677525T>A	uc002wrl.2	+	14	1773	c.1576T>A	c.(1576-1578)TGC>AGC	p.C526S		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	526	Alpha-2.|Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						CGTGCCTGACTGCATGGCCAG	0.428													4	37					0	0	0.000157383	0	0
C20orf26	26074	broad.mit.edu	37	20	20071514	20071514	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:20071514C>A	uc002wru.2	+	7	669	c.593C>A	c.(592-594)CCA>CAA	p.P198Q	C20orf26_uc010gcw.1_Missense_Mutation_p.P152Q|C20orf26_uc010zse.1_Missense_Mutation_p.P198Q|C20orf26_uc010zsf.1_Missense_Mutation_p.P198Q	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	198										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		GATCTCATGCCAATATTTATG	0.358													7	164					0.000978159	0.00917326	0.000978159	1	0
C20orf26	26074	broad.mit.edu	37	20	20079324	20079324	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:20079324T>C	uc002wru.2	+	8	801	c.725T>C	c.(724-726)ATG>ACG	p.M242T	C20orf26_uc010gcw.1_Missense_Mutation_p.M196T|C20orf26_uc010zse.1_Missense_Mutation_p.M242T|C20orf26_uc010zsf.1_Missense_Mutation_p.M242T	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	242										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		GTTGGGTTCATGAGTGTGTGC	0.363													8	295					0	0	0.000157383	0	0
ZNF337	26152	broad.mit.edu	37	20	25656276	25656276	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:25656276C>G	uc002wva.2	-	4	2170	c.1648G>C	c.(1648-1650)GAG>CAG	p.E550Q	uc002wuz.2_RNA|ZNF337_uc010ztg.1_Missense_Mutation_p.E518Q|ZNF337_uc002wvb.2_Missense_Mutation_p.E550Q|ZNF337_uc002wvc.2_Missense_Mutation_p.E550Q	NM_015655	NP_056470	Q9Y3M9	ZN337_HUMAN	zinc finger protein 337	550	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAACTTTTCTCACACTGCTTG	0.478													4	129					0	0	3.59834e-05	0	0
DEFB124	245937	broad.mit.edu	37	20	30060764	30060764	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:30060764G>C	uc002wvz.1	-	1	53	c.53C>G	c.(52-54)CCA>CGA	p.P18R	REM1_uc002wwa.2_5'Flank	NM_001037500	NP_001032589	Q8NES8	DB124_HUMAN	beta-defensin 124 precursor	18					defense response to bacterium	extracellular region					0	Lung NSC(7;0.000139)|all_lung(7;0.000197)|all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			GTTACCTGATGGCACATGACC	0.453													3	47					0	0	6.4e-05	0	0
DUSP15	128853	broad.mit.edu	37	20	30451729	30451729	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:30451729C>G	uc002wwu.1	-	5	312	c.235G>C	c.(235-237)GGG>CGG	p.G79R	DUSP15_uc002wwv.1_5'UTR|DUSP15_uc002www.1_5'UTR|DUSP15_uc002wwx.1_Missense_Mutation_p.G82R			Q9H1R2	DUS15_HUMAN	RecName: Full=Dual specificity protein phosphatase 15;          EC=3.1.3.48;          EC=3.1.3.16; AltName: Full=Vaccinia virus VH1-related dual-specific protein phosphatase Y; AltName: Full=VH1-related member Y;	79	Tyrosine-protein phosphatase.					cytoplasm|plasma membrane	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			pancreas(1)	1			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			AGGCAGTTCCCCCCATTAAGG	0.547													5	83					0	0	0.000602214	0	0
HCK	3055	broad.mit.edu	37	20	30671706	30671706	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:30671706C>T	uc002wxh.2	+	7	713	c.542C>T	c.(541-543)TCT>TTT	p.S181F	HCK_uc010gdy.2_Missense_Mutation_p.S160F|HCK_uc002wxi.2_Missense_Mutation_p.S159F	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	181	SH2.				interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GGAAGCTACTCTTTGTCCGTG	0.547													20	81					0	0	0.000132079	0	0
SUN5	140732	broad.mit.edu	37	20	31575518	31575518	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:31575518C>A	uc002wyi.2	-	10	770	c.677G>T	c.(676-678)TGG>TTG	p.W226L		NM_080675	NP_542406	Q8TC36	SUN5_HUMAN	sperm associated antigen 4-like	226	SUN.				spermatogenesis					skin(1)	1						GATCCAGTTCCAGTAGGAGTG	0.423													4	17					3.59834e-05	0.000429	3.59834e-05	1	0
NCOA6	23054	broad.mit.edu	37	20	33345456	33345456	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:33345456C>G	uc002xav.2	-	8	3666	c.1095G>C	c.(1093-1095)ACG>ACC	p.T365T	NCOA6_uc002xaw.2_Silent_p.T365T|NCOA6_uc010gew.1_Silent_p.T322T	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	365	TBP/GTF2A-binding region.|NCOA1-binding region.|Gln-rich.|CREBBP-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						GCGTCTGTACCGTGGCTAAGG	0.577													5	130					0	0	0.000602214	0	0
MYH7B	57644	broad.mit.edu	37	20	33581980	33581980	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:33581980C>G	uc002xbi.1	+	25	2694	c.2602C>G	c.(2602-2604)CGT>GGT	p.R868G		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	826						membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			GTGGAACATCCGTGCCTTCAA	0.587													4	135					0	0	8.12818e-05	0	0
C20orf152	140894	broad.mit.edu	37	20	34560590	34560590	+	Missense_Mutation	SNP	C	G	G	rs138466031		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:34560590C>G	uc002xes.1	+	2	247	c.91C>G	c.(91-93)CGA>GGA	p.R31G	C20orf152_uc002xer.1_Missense_Mutation_p.R31G|C20orf152_uc010gfp.1_RNA			Q96M20	CT152_HUMAN	SubName: Full=C20orf152 protein;	31											0	Breast(12;0.00631)					CATAATGATCCGAGTGTGTAA	0.443													6	132					0	0	3.59834e-05	0	0
MYL9	10398	broad.mit.edu	37	20	35177614	35177614	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:35177614C>A	uc002xfl.1	+	4	575	c.481C>A	c.(481-483)CGC>AGC	p.R161S	uc002xfk.3_Intron|MYL9_uc002xfm.1_Missense_Mutation_p.R107S	NM_006097	NP_006088	P24844	MYL9_HUMAN	myosin regulatory light chain 9 isoform a	161	EF-hand 3.				axon guidance|muscle contraction|regulation of muscle contraction	cytosol|muscle myosin complex	calcium ion binding|structural constituent of muscle				0	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				GGAGTTCACCCGCATCCTCAA	0.602													5	49					0.000157383	0.00173811	0.000157383	1	0
SLA2	84174	broad.mit.edu	37	20	35242330	35242330	+	Missense_Mutation	SNP	C	G	G	rs34907878		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:35242330C>G	uc002xfv.2	-	8	1087	c.725G>C	c.(724-726)CGG>CCG	p.R242P	SLA2_uc002xfu.2_3'UTR	NM_032214	NP_115590	Q9H6Q3	SLAP2_HUMAN	Src-like-adaptor 2 isoform a	242	SLA C-terminal.				antigen receptor-mediated signaling pathway|B cell mediated immunity|intracellular receptor mediated signaling pathway|negative regulation of B cell activation|negative regulation of calcium-mediated signaling|negative regulation of transcription from RNA polymerase II promoter|T cell activation	cytoplasmic membrane-bounded vesicle|endosome membrane|plasma membrane	protein N-terminus binding|SH3/SH2 adaptor activity				0	Breast(12;0.114)	Myeloproliferative disorder(115;0.00878)				GAGGGACTCCCGGAGACCCTC	0.537													4	72					0	0	0.00024832	0	0
NDRG3	57446	broad.mit.edu	37	20	35315939	35315939	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:35315939C>A	uc002xfw.2	-	5	358	c.276G>T	c.(274-276)GTG>GTT	p.V92V	NDRG3_uc002xfx.2_Silent_p.V80V|NDRG3_uc010zvq.1_Intron|NDRG3_uc010zvr.1_Intron	NM_032013	NP_114402	Q9UGV2	NDRG3_HUMAN	N-myc downstream regulated gene 3 isoform a	92					cell differentiation|negative regulation of cell growth|spermatogenesis	cytoplasm				ovary(1)	1		Myeloproliferative disorder(115;0.00878)				CTGGGGCATCCACATGACAGA	0.458													6	82					0.000157383	0.00173811	0.000157383	1	0
SAMHD1	25939	broad.mit.edu	37	20	35559248	35559248	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:35559248G>A	uc002xgh.1	-	5	670	c.540C>T	c.(538-540)CAC>CAT	p.H180H		NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	180	HD.				defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				CACCCAGTGCGTGAACTAGAC	0.448													7	104					0	0	8.12818e-05	0	0
RBL1	5933	broad.mit.edu	37	20	35689582	35689582	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:35689582G>T	uc002xgi.2	-	9	1253	c.1174C>A	c.(1174-1176)CAA>AAA	p.Q392K	RBL1_uc010zvt.1_RNA|RBL1_uc002xgj.1_Missense_Mutation_p.Q392K|RBL1_uc010gfv.1_RNA	NM_002895	NP_002886	P28749	RBL1_HUMAN	retinoblastoma-like protein 1 isoform a	392	Domain A.|Pocket; binds T and E1A.				cell cycle|chromatin modification|interspecies interaction between organisms|regulation of cell cycle|regulation of lipid kinase activity|transcription, DNA-dependent		transcription factor binding			lung(5)|skin(3)|ovary(2)	10		Myeloproliferative disorder(115;0.00878)				CTCACACTTTGGGTGGCTGAT	0.408													8	75					5.4927e-09	7.26362e-08	0.000274275	1	0
RBL1	5933	broad.mit.edu	37	20	35696536	35696536	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:35696536G>T	uc002xgi.2	-	3	423	c.344C>A	c.(343-345)CCA>CAA	p.P115Q	RBL1_uc010zvt.1_RNA|RBL1_uc002xgj.1_Missense_Mutation_p.P115Q|RBL1_uc010gfv.1_RNA	NM_002895	NP_002886	P28749	RBL1_HUMAN	retinoblastoma-like protein 1 isoform a	115					cell cycle|chromatin modification|interspecies interaction between organisms|regulation of cell cycle|regulation of lipid kinase activity|transcription, DNA-dependent		transcription factor binding			lung(5)|skin(3)|ovary(2)	10		Myeloproliferative disorder(115;0.00878)				AAATTCTTGTGGTAGATTTGA	0.269													7	113					0.000673444	0.00655963	0.000673444	1	0
KIAA0406	9675	broad.mit.edu	37	20	36640616	36640616	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:36640616C>G	uc002xhl.2	-	3	1812	c.1603G>C	c.(1603-1605)GGG>CGG	p.G535R	KIAA0406_uc002xhm.2_Missense_Mutation_p.G535R	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	535							binding				0		Myeloproliferative disorder(115;0.00874)				ACCTCCAGCCCAGCAGCCCCT	0.408													4	155					0	0	0.00024832	0	0
RALGAPB	57148	broad.mit.edu	37	20	37154673	37154673	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:37154673C>A	uc002xiw.2	+	13	2295	c.2038C>A	c.(2038-2040)CAA>AAA	p.Q680K	RALGAPB_uc002xix.2_Missense_Mutation_p.Q680K|RALGAPB_uc002xiy.1_Missense_Mutation_p.Q680K|RALGAPB_uc002xiz.2_Missense_Mutation_p.Q458K|RALGAPB_uc002xja.1_Missense_Mutation_p.Q407K	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	680					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						CAACAACACCCAAATGATATT	0.418													6	120					0.000274275	0.00290969	0.000274275	1	0
RALGAPB	57148	broad.mit.edu	37	20	37159863	37159863	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:37159863C>G	uc002xiw.2	+	14	2361	c.2104C>G	c.(2104-2106)CAG>GAG	p.Q702E	RALGAPB_uc002xix.2_Missense_Mutation_p.Q702E|RALGAPB_uc002xiy.1_Missense_Mutation_p.Q702E|RALGAPB_uc002xiz.2_Missense_Mutation_p.Q480E|RALGAPB_uc002xja.1_Missense_Mutation_p.Q429E	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	702					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						CATTGGTTGCCAGATGGAGAT	0.318													4	131					0	0	0.00024832	0	0
RALGAPB	57148	broad.mit.edu	37	20	37174901	37174901	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:37174901C>G	uc002xiw.2	+	19	2987	c.2730C>G	c.(2728-2730)CTC>CTG	p.L910L	RALGAPB_uc002xix.2_Silent_p.L906L|RALGAPB_uc002xiy.1_Silent_p.L910L|RALGAPB_uc002xiz.2_Silent_p.L688L|RALGAPB_uc002xja.1_Silent_p.L637L	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	910					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						TGCAGTTGCTCGGCGCATTTC	0.428													4	128					0	0	3.59834e-05	0	0
PLCG1	5335	broad.mit.edu	37	20	39795007	39795007	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:39795007C>G	uc002xjp.1	+	17	2094	c.1973C>G	c.(1972-1974)CCA>CGA	p.P658R	PLCG1_uc002xjo.1_Missense_Mutation_p.P658R|PLCG1_uc010zwe.1_Missense_Mutation_p.P284R|PLCG1_uc010ggf.2_Missense_Mutation_p.P8R	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	658					activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				GAGCCTGTCCCACAGACCAAC	0.612													4	77					0	0	0.000602214	0	0
SFRS6	6431	broad.mit.edu	37	20	42089213	42089213	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:42089213C>A	uc010zwg.1	+	5	819	c.649C>A	c.(649-651)CGA>AGA	p.R217R	SFRS6_uc002xki.2_Silent_p.R88R|SFRS6_uc002xkk.2_Silent_p.R217R	NM_006275	NP_006266	Q13247	SRSF6_HUMAN	arginine/serine-rich splicing factor 6	217	Arg/Ser-rich (RS domain).				mRNA 3'-end processing|mRNA export from nucleus|mRNA splice site selection|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			CAGTAGATCTCGAAGTATCTC	0.423													8	114					0.000442599	0.00445669	0.000442599	1	0
C20orf111	51526	broad.mit.edu	37	20	42825943	42825943	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:42825943G>C	uc002xlk.2	-	4	765	c.628C>G	c.(628-630)CAT>GAT	p.H210D		NM_016470	NP_057554	Q9NX31	CT111_HUMAN	oxidative stress responsive 1	210											0		Myeloproliferative disorder(115;0.028)	COAD - Colon adenocarcinoma(18;0.00189)			TCCATATCATGCCATCTCTTA	0.498													3	127					0	0	3.59834e-05	0	0
YWHAB	7529	broad.mit.edu	37	20	43530320	43530320	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:43530320C>T	uc002xmt.2	+	3	428	c.146C>T	c.(145-147)GCC>GTC	p.A49V	YWHAB_uc002xmu.2_Missense_Mutation_p.A49V	NM_003404	NP_003395	P31946	1433B_HUMAN	tyrosine 3-monooxygenase/tryptophan	49					activation of MAPKK activity|activation of pro-apoptotic gene products|axon guidance|cytoplasmic sequestering of protein|epidermal growth factor receptor signaling pathway|induction of apoptosis by intracellular signals|insulin receptor signaling pathway|mRNA metabolic process|negative regulation of protein dephosphorylation|nerve growth factor receptor signaling pathway|Ras protein signal transduction	centrosome|cytosol|melanosome|perinuclear region of cytoplasm	histone deacetylase binding|phosphoserine binding|protein domain specific binding			kidney(2)|ovary(1)|breast(1)	4		Myeloproliferative disorder(115;0.0122)				CTCTCTGTTGCCTACAAGAAT	0.522													13	86					0	0	0.00010058	0	0
SDC4	6385	broad.mit.edu	37	20	43964489	43964489	+	Missense_Mutation	SNP	G	T	T	rs141488868		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:43964489G>T	uc002xnu.2	-	2	172	c.132C>A	c.(130-132)GAC>GAA	p.D44E	SDC4_uc010zws.1_Intron	NM_002999	NP_002990	P31431	SDC4_HUMAN	syndecan 4 precursor	44	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytoskeletal protein binding|thrombospondin receptor activity				0		Myeloproliferative disorder(115;0.0122)				CATCCTCATCGTCTGGTAGGG	0.567													4	63					3.59834e-05	0.000429	3.59834e-05	1	0
PREX1	57580	broad.mit.edu	37	20	47361608	47361608	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:47361608G>C	uc002xtw.1	-	3	391	c.368C>G	c.(367-369)CCG>CGG	p.P123R		NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	123	DH.				actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			CTGCGGCTCCGGGTGTAAACA	0.483													8	215					0	0	0.000274275	0	0
DDX27	55661	broad.mit.edu	37	20	47852924	47852924	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:47852924C>A	uc002xuh.2	+	14	1718	c.1657C>A	c.(1657-1659)CGA>AGA	p.R553R		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	553	Helicase C-terminal.					nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CCGGGTGGGGCGAACAGCACG	0.537													5	181					0.000157383	0.00173811	0.000157383	1	0
ZNFX1	57169	broad.mit.edu	37	20	47866247	47866247	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:47866247C>G	uc002xui.2	-	14	3561	c.3314G>C	c.(3313-3315)GGG>GCG	p.G1105A		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	1105							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GGAAGACACCCCCTGACAGGG	0.453													4	108					0	0	0.00024832	0	0
ZNFX1	57169	broad.mit.edu	37	20	47870293	47870293	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:47870293C>A	uc002xui.2	-	11	3262	c.3015G>T	c.(3013-3015)GTG>GTT	p.V1005V		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	1005							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CAGCTTCTTCCACTATGACAA	0.522													9	250					0.000978159	0.00917326	0.000978159	1	0
SLC9A8	23315	broad.mit.edu	37	20	48504378	48504378	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:48504378G>C	uc002xuv.1	+	16	1861	c.1651G>C	c.(1651-1653)GGG>CGG	p.G551R	SLC9A8_uc010zym.1_Missense_Mutation_p.G251R|SLC9A8_uc010gid.2_Missense_Mutation_p.G175R	NM_015266	NP_056081	Q9Y2E8	SL9A8_HUMAN	sodium/hydrogen exchanger 8	551						Golgi membrane|integral to membrane	sodium:hydrogen antiporter activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(9;3.91e-07)			CCTGCACCACGGGCGCATCCA	0.632													3	63					0	0	6.4e-05	0	0
ADNP	23394	broad.mit.edu	37	20	49508529	49508529	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:49508529G>C	uc002xvt.1	-	5	3067	c.2722C>G	c.(2722-2724)CCA>GCA	p.P908A	ADNP_uc002xvu.1_Missense_Mutation_p.P908A	NM_015339	NP_056154	Q9H2P0	ADNP_HUMAN	activity-dependent neuroprotector	908						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						TGTTCCTCTGGGTTATCGTTA	0.378													4	215					0	0	0.00024832	0	0
NFATC2	4773	broad.mit.edu	37	20	50092014	50092014	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:50092014T>G	uc002xwd.2	-	4	1736	c.1516A>C	c.(1516-1518)AAA>CAA	p.K506Q	NFATC2_uc002xwc.2_Missense_Mutation_p.K506Q|NFATC2_uc010zyv.1_Missense_Mutation_p.K287Q|NFATC2_uc010zyw.1_Missense_Mutation_p.K287Q|NFATC2_uc010zyx.1_Missense_Mutation_p.K486Q|NFATC2_uc010zyy.1_Missense_Mutation_p.K287Q|NFATC2_uc010zyz.1_Missense_Mutation_p.K287Q|NFATC2_uc002xwe.2_Missense_Mutation_p.K486Q	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	506	RHD.				B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					ATGTTGTTTTTGGGCTCCAAG	0.577													4	111					0	0	0.00024832	0	0
ZFP64	55734	broad.mit.edu	37	20	50713954	50713954	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:50713954G>C	uc002xwk.2	-	7	1283	c.934C>G	c.(934-936)CAT>GAT	p.H312D	ZFP64_uc002xwj.2_Missense_Mutation_p.H93D	NM_199427	NP_955459	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform d	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						TTCATGCCATGGACAGTTTTG	0.284													5	327					0	0	8.12818e-05	0	0
ZFP64	55734	broad.mit.edu	37	20	50776663	50776663	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:50776663C>G	uc002xwl.2	-	5	1111	c.762G>C	c.(760-762)ACG>ACC	p.T254T	ZFP64_uc002xwk.2_Silent_p.T254T|ZFP64_uc002xwm.2_Silent_p.T252T|ZFP64_uc002xwn.2_Silent_p.T200T	NM_018197	NP_060667	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform a	254					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						AGGACTCACCCGTGTGGGATC	0.527													4	159					0	0	0.00024832	0	0
RAE1	8480	broad.mit.edu	37	20	55948794	55948794	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:55948794G>C	uc002xyg.2	+	10	1166	c.825G>C	c.(823-825)GCG>GCC	p.A275A	RAE1_uc010gis.1_Silent_p.A228A|RAE1_uc010git.1_Silent_p.A275A|RAE1_uc002xyh.2_Silent_p.A275A|RAE1_uc002xyi.2_Silent_p.A275A	NM_003610	NP_003601	P78406	RAE1L_HUMAN	RAE1 (RNA export 1, S.pombe) homolog	275	WD 4.				carbohydrate metabolic process|glucose transport|mRNA export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|cytoskeleton|nuclear outer membrane|nuclear pore	microtubule binding|RNA binding				0	Lung NSC(12;0.00263)|all_lung(29;0.00828)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;3.7e-14)|Epithelial(14;1.07e-09)|all cancers(14;1.11e-08)			ACATTTATGCGGTACGTTTTT	0.423													5	228					0	0	0.000157383	0	0
PCK1	5105	broad.mit.edu	37	20	56138687	56138687	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:56138687G>C	uc002xyn.3	+	6	1028	c.865G>C	c.(865-867)GGG>CGG	p.G289R	PCK1_uc010zzm.1_Intron	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	289	GTP.				gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			CAGCGCCTGCGGGAAGACCAA	0.547													4	80					0	0	0.00024832	0	0
PPP1R3D	5509	broad.mit.edu	37	20	58514630	58514630	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:58514630G>A	uc002ybb.2	-	1	723	c.357C>T	c.(355-357)TTC>TTT	p.F119F	C20orf177_uc002yba.2_Intron|C20orf177_uc010zzx.1_5'Flank|C20orf177_uc002ybc.2_5'Flank	NM_006242	NP_006233	O95685	PPR3D_HUMAN	protein phosphatase 1, regulatory subunit 3D	119					glycogen metabolic process		protein binding|protein serine/threonine phosphatase activity				0	all_lung(29;0.00391)		BRCA - Breast invasive adenocarcinoma(7;5.12e-09)			CTCCCGCGTTGAACACCTTGA	0.627													7	26					0	0	8.12818e-05	0	0
DIDO1	11083	broad.mit.edu	37	20	61513426	61513426	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:61513426C>G	uc002ydr.1	-	16	4146	c.3882G>C	c.(3880-3882)GCG>GCC	p.A1294A	DIDO1_uc002yds.1_Silent_p.A1294A	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1294					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					TGGAGGCTGCCGCTGCTGTTG	0.597													4	104					0	0	0.00024832	0	0
EEF1A2	1917	broad.mit.edu	37	20	62121949	62121949	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:62121949G>C	uc002yfd.1	-	5	1013	c.912C>G	c.(910-912)CCC>CCG	p.P304P	EEF1A2_uc002yfe.1_Silent_p.P304P|EEF1A2_uc010gkg.1_Silent_p.P304P	NM_001958	NP_001949	Q05639	EF1A2_HUMAN	eukaryotic translation elongation factor 1 alpha	304						nucleus	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0	all_cancers(38;9.45e-12)		BRCA - Breast invasive adenocarcinoma(10;1.22e-05)			CGTTGTCGCCGGGCAGAGCTT	0.622													4	102					0	0	3.59834e-05	0	0
EEF1A2	1917	broad.mit.edu	37	20	62129045	62129045	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:62129045C>G	uc002yfd.1	-	1	173	c.72G>C	c.(70-72)ACG>ACC	p.T24T	EEF1A2_uc002yfe.1_Silent_p.T24T|EEF1A2_uc010gkg.1_Silent_p.T24T	NM_001958	NP_001949	Q05639	EF1A2_HUMAN	eukaryotic translation elongation factor 1 alpha	24						nucleus	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0	all_cancers(38;9.45e-12)		BRCA - Breast invasive adenocarcinoma(10;1.22e-05)			TGAGGTGGCCCGTGGTGGTGG	0.577													4	166					0	0	0.000157383	0	0
TPTE	7179	broad.mit.edu	37	21	11020828	11020828	+	RNA	SNP	G	C	C	rs11508688		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:11020828G>C	uc002yis.1	-	5		c.1131C>G						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TACTGACACAGTATGGATGGT	0.378													8	198					0	0	0.000219431	0	0
C21orf91	54149	broad.mit.edu	37	21	19169435	19169435	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:19169435C>G	uc002yko.3	-	3	219	c.128G>C	c.(127-129)GGG>GCG	p.G43A	C21orf91_uc002ykq.3_Missense_Mutation_p.G43A|C21orf91_uc002ykp.3_Missense_Mutation_p.G43A	NM_001100420	NP_001093890	Q9NYK6	EURL_HUMAN	early undifferentiated retina and lens isoform	43										ovary(1)	1				Epithelial(23;8.76e-05)|all cancers(11;0.000422)|OV - Ovarian serous cystadenocarcinoma(11;0.0107)|Lung(58;0.0129)|COAD - Colon adenocarcinoma(22;0.0303)|LUSC - Lung squamous cell carcinoma(23;0.0381)|Colorectal(24;0.0929)		CTTTGGTACCCCTATGGAAAA	0.348													4	106					0	0	3.59834e-05	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19666725	19666726	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:19666725_19666726GG>TT	uc002ykw.2	-	21	2378_2379	c.2347_2348CC>AA	c.(2347-2349)CCA>AAA	p.P783K		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	783	Extracellular (Potential).				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						AACAATCTTTGGGGTGATGTCT	0.46													9	230					0	0	6.4e-05	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19685314	19685314	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:19685314C>G	uc002ykw.2	-	18	2144	c.2113G>C	c.(2113-2115)GAG>CAG	p.E705Q		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	705	Extracellular (Potential).|SRCR.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						GTCCAGTTCTCAGCACAAGCT	0.328													3	98					0	0	6.4e-05	0	0
MRPL39	54148	broad.mit.edu	37	21	26972170	26972170	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:26972170C>G	uc002ylo.2	-	5	543	c.529G>C	c.(529-531)GGT>CGT	p.G177R	MRPL39_uc002yln.2_Missense_Mutation_p.G177R	NM_017446	NP_059142	Q9NYK5	RM39_HUMAN	mitochondrial ribosomal protein L39 isoform a	177						mitochondrial ribosome	nucleotide binding				0						CAGAAGGCACCAGAAATTACT	0.343													5	162					0	0	0.000602214	0	0
CCT8	10694	broad.mit.edu	37	21	30434539	30434539	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:30434539G>T	uc002ynb.2	-	11	1221	c.1122C>A	c.(1120-1122)ACC>ACA	p.T374T	CCT8_uc002ymz.2_5'UTR|CCT8_uc011acp.1_Silent_p.T355T|CCT8_uc002yna.2_Silent_p.T323T|CCT8_uc002ync.2_Silent_p.T373T|CCT8_uc010glm.2_Silent_p.T315T|CCT8_uc011acq.1_Silent_p.T301T	NM_006585	NP_006576	P50990	TCPQ_HUMAN	chaperonin containing TCP1, subunit 8 (theta)	374					'de novo' posttranslational protein folding	aggresome|cytosol|intermediate filament cytoskeleton|microtubule organizing center	ATP binding|ATPase activity, coupled|unfolded protein binding				0						GAAGTACTATGGTAGAAATGG	0.353													8	153					0.000673444	0.00655963	0.000673444	1	0
GRIK1	2897	broad.mit.edu	37	21	30971233	30971233	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:30971233G>T	uc002yno.1	-	8	1587	c.1123C>A	c.(1123-1125)CAT>AAT	p.H375N	GRIK1_uc002ynn.2_Missense_Mutation_p.H375N|GRIK1_uc011acs.1_Missense_Mutation_p.H375N|GRIK1_uc011act.1_Missense_Mutation_p.H319N|GRIK1_uc010glq.1_Missense_Mutation_p.H233N|GRIK1_uc002ynr.2_Missense_Mutation_p.H375N|uc002ynp.1_Intron	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	375	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	AAGGTGATATGCCCAGTCAAG	0.383													7	93					0.000978159	0.00917326	0.000978159	1	0
GRIK1	2897	broad.mit.edu	37	21	31062116	31062116	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:31062116C>G	uc002yno.1	-	3	940	c.476G>C	c.(475-477)AGG>ACG	p.R159T	GRIK1_uc002ynn.2_Missense_Mutation_p.R159T|GRIK1_uc011acs.1_Missense_Mutation_p.R159T|GRIK1_uc011act.1_Missense_Mutation_p.R103T|GRIK1_uc010glq.1_Intron|GRIK1_uc002ynr.2_Missense_Mutation_p.R159T	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	159	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	CAGGATCGCCCTGCTGATAGC	0.488													5	132					0	0	8.12818e-05	0	0
CLDN17	26285	broad.mit.edu	37	21	31538549	31538549	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:31538549C>G	uc011acv.1	-	1	387	c.387G>C	c.(385-387)ACG>ACC	p.T129T		NM_012131	NP_036263	P56750	CLD17_HUMAN	claudin 17	129	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	Golgi apparatus|integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(2)	2						CGAAGATGCCCGTCAGGATGA	0.507													4	99					0	0	8.12818e-05	0	0
KRTAP13-2	337959	broad.mit.edu	37	21	31744193	31744193	+	Silent	SNP	T	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:31744193T>A	uc002ynz.3	-	1	365	c.339A>T	c.(337-339)GGA>GGT	p.G113G		NM_181621	NP_853652	Q52LG2	KR132_HUMAN	keratin associated protein 13-2	113						intermediate filament					0						AGCTCCTCGATCCATAGCCCA	0.582													14	68					0	0	0.000219431	0	0
KRTAP19-5	337972	broad.mit.edu	37	21	31874312	31874312	+	Missense_Mutation	SNP	G	C	C	rs142713888		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:31874312G>C	uc011ada.1	-	1	97	c.97C>G	c.(97-99)CGC>GGC	p.R33G		NM_181611	NP_853642	Q3LI72	KR195_HUMAN	keratin associated protein 19-5	33						intermediate filament	protein binding				0						CCCAGTCTGCGGAAGCTGCCA	0.587													6	148					0	0	0.000157383	0	0
TIAM1	7074	broad.mit.edu	37	21	32503267	32503267	+	Splice_Site	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:32503267C>G	uc002yow.1	-	25	4356	c.3884_splice	c.e25-1	p.V1295_splice	TIAM1_uc011adk.1_Splice_Site_p.V1295_splice|TIAM1_uc011adl.1_Splice_Site_p.V1235_splice	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1						apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						GTTTTGAAGACTGGAAAAAAT	0.358													3	54					0	0	0.00024832	0	0
TIAM1	7074	broad.mit.edu	37	21	32595770	32595770	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:32595770C>A	uc002yow.1	-	9	2419	c.1947G>T	c.(1945-1947)GTG>GTT	p.V649V	TIAM1_uc011adk.1_Silent_p.V649V|TIAM1_uc011adl.1_Silent_p.V649V|TIAM1_uc002yox.1_Silent_p.V257V	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	649					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						GGCCCATGGCCACTTTCGTTG	0.478													7	133					0.000442599	0.00445669	0.000442599	1	0
SFRS15	57466	broad.mit.edu	37	21	33067275	33067275	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:33067275C>G	uc002ypd.2	-	10	1513	c.1087G>C	c.(1087-1089)GGA>CGA	p.G363R	SFRS15_uc002ype.2_Missense_Mutation_p.G363R|SFRS15_uc010glu.2_Missense_Mutation_p.G348R|SFRS15_uc002ypf.1_Missense_Mutation_p.G37R	NM_020706	NP_065757	O95104	SFR15_HUMAN	splicing factor, arginine/serine-rich 15 isoform	363						nucleus	nucleotide binding|RNA binding				0						GGCATTTGTCCATTAGGAGGA	0.398													4	98					0	0	0.00024832	0	0
HUNK	30811	broad.mit.edu	37	21	33246216	33246216	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:33246216C>G	uc002yph.2	+	1	589	c.229C>G	c.(229-231)CGC>GGC	p.R77G		NM_014586	NP_055401	P57058	HUNK_HUMAN	hormonally upregulated Neu-associated kinase	77	Protein kinase.				multicellular organismal development|signal transduction		ATP binding|protein serine/threonine kinase activity			stomach(1)|skin(1)	2						TGCCAAGGTGCGCGAGGGGCT	0.731													2	5					0	0	0.00024832	0	0
SYNJ1	8867	broad.mit.edu	37	21	34038752	34038752	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:34038752G>T	uc002yqh.2	-	16	2060	c.2060C>A	c.(2059-2061)CCT>CAT	p.P687H	SYNJ1_uc011ads.1_Missense_Mutation_p.P643H|SYNJ1_uc002yqf.2_Missense_Mutation_p.P648H|SYNJ1_uc002yqg.2_Missense_Mutation_p.P643H|SYNJ1_uc002yqi.2_Missense_Mutation_p.P687H	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	648	Catalytic (Potential).						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						CCTGATAAAAGGAGCATGCTG	0.398													9	284					1.58986e-06	2.00859e-05	0.000673444	1	0
SYNJ1	8867	broad.mit.edu	37	21	34056396	34056396	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:34056396C>A	uc002yqh.2	-	10	1269	c.1269G>T	c.(1267-1269)TTG>TTT	p.L423F	SYNJ1_uc011ads.1_Missense_Mutation_p.L384F|SYNJ1_uc002yqf.2_Missense_Mutation_p.L384F|SYNJ1_uc002yqg.2_Missense_Mutation_p.L384F|SYNJ1_uc002yqi.2_Missense_Mutation_p.L423F	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	384	SAC.						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						CAAGACAATCCAAGCAGTTTG	0.333													7	116					0.000442599	0.00445669	0.000442599	1	0
IFNAR2	3455	broad.mit.edu	37	21	34635141	34635141	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:34635141C>G	uc002yrd.2	+	9	1212	c.884C>G	c.(883-885)CCG>CGG	p.P295R	IFNAR2_uc002yre.2_Missense_Mutation_p.P295R|IFNAR2_uc002yrf.2_3'UTR|IL10RB_uc002yrh.1_Intron|IL10RB_uc002yri.1_Intron	NM_207585	NP_997468	P48551	INAR2_HUMAN	interferon alpha/beta receptor 2 isoform a	295	Cytoplasmic (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to interferon-alpha|response to virus|type I interferon-mediated signaling pathway	extracellular region|extracellular space|integral to plasma membrane	protein kinase binding|type I interferon binding|type I interferon receptor activity				0					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	AACCTGCCACCGTTGGAAGCC	0.378													5	194					0	0	3.59834e-05	0	0
IFNAR1	3454	broad.mit.edu	37	21	34727797	34727797	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:34727797C>A	uc002yrn.2	+	11	1763	c.1616C>A	c.(1615-1617)TCT>TAT	p.S539Y	IFNAR1_uc011adv.1_Missense_Mutation_p.S470Y	NM_000629	NP_000620	P17181	INAR1_HUMAN	interferon-alpha receptor 1 precursor	539	Cytoplasmic (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	integral to plasma membrane	type I interferon receptor activity			central_nervous_system(1)|skin(1)	2					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	GGAAATTATTCTAATGAAGAT	0.338													13	226					8.00594e-06	9.89361e-05	0.000958276	1	0
TMEM50B	757	broad.mit.edu	37	21	34839413	34839413	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:34839413C>G	uc002yrt.1	-	3	294	c.116G>C	c.(115-117)TGG>TCG	p.W39S	TMEM50B_uc002yrs.1_RNA|TMEM50B_uc010gmb.1_RNA	NM_006134	NP_006125	P56557	TM50B_HUMAN	transmembrane protein 50B	39	Helical; (Potential).					endoplasmic reticulum|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						AATCATTATCCACCAGCCTGT	0.393													4	87					0	0	0.00024832	0	0
DOPEY2	9980	broad.mit.edu	37	21	37617407	37617407	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:37617407C>G	uc002yvg.2	+	19	3208	c.3129C>G	c.(3127-3129)CCC>CCG	p.P1043P	DOPEY2_uc011aeb.1_Silent_p.P992P|DOPEY2_uc002yvh.2_5'UTR	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	1043					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						GCGCAGTGCCCGAGCCTCAGG	0.522													4	73					0	0	3.59834e-05	0	0
TTC3	7267	broad.mit.edu	37	21	38512909	38512910	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:38512909_38512910CC>AG	uc002yvz.2	+	20	1813_1814	c.1708_1709CC>AG	c.(1708-1710)CCC>AGC	p.P570S	TTC3_uc011aee.1_Missense_Mutation_p.P260S|TTC3_uc002ywa.2_Missense_Mutation_p.P570S|TTC3_uc002ywb.2_Missense_Mutation_p.P570S|TTC3_uc010gnf.2_Missense_Mutation_p.P335S|TTC3_uc002ywc.2_Missense_Mutation_p.P260S|TTC3_uc011aed.1_Missense_Mutation_p.P260S|TTC3_uc010gne.1_Missense_Mutation_p.P570S	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	570	TPR 3.				protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				TGAACACTACCCCAGTGAGGGC	0.371													7	156					0	0	6.4e-05	0	0
TTC3	7267	broad.mit.edu	37	21	38529124	38529124	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:38529124C>G	uc002yvz.2	+	28	3013	c.2908C>G	c.(2908-2910)CGT>GGT	p.R970G	TTC3_uc011aee.1_Missense_Mutation_p.R660G|TTC3_uc002ywa.2_Missense_Mutation_p.R970G|TTC3_uc002ywb.2_Missense_Mutation_p.R970G|TTC3_uc010gnf.2_Missense_Mutation_p.R735G|TTC3_uc002ywc.2_Missense_Mutation_p.R660G|TTC3_uc002ywd.1_Missense_Mutation_p.R34G	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	970					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				GAAGGAAGCCCGTTGTTTAAT	0.393													4	134					0	0	8.12818e-05	0	0
BRWD1	54014	broad.mit.edu	37	21	40597051	40597051	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:40597051G>T	uc002yxk.1	-	28	3420	c.3281C>A	c.(3280-3282)CCA>CAA	p.P1094Q	BRWD1_uc010goc.1_5'UTR|BRWD1_uc002yxl.2_Missense_Mutation_p.P1094Q|BRWD1_uc010god.1_Missense_Mutation_p.P60Q	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	1094					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				AGGATACTGTGGTTGATATGG	0.393													7	142					0.000442599	0.00445669	0.000442599	1	0
DSCAM	1826	broad.mit.edu	37	21	42080618	42080619	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:42080618_42080619CC>TA	uc002yyq.1	-	2	574_575	c.122_123GG>TA	c.(121-123)GGG>GTA	p.G41V	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	41	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GCACCAGAGTCCCCGTGGTGCT	0.574													19	103					0	0	6.4e-05	0	0
RIPK4	54101	broad.mit.edu	37	21	43161475	43161475	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:43161475C>A	uc002yzn.1	-	8	1926	c.1878G>T	c.(1876-1878)CTG>CTT	p.L626L		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	626						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						CGTCGGAGCACAGGTCGATGA	0.692													6	89					0.000673444	0.00655963	0.000673444	1	0
RIPK4	54101	broad.mit.edu	37	21	43166929	43166929	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:43166929C>A	uc002yzn.1	-	5	724	c.676G>T	c.(676-678)GAG>TAG	p.E226*		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	226						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						ATGTTCTTCTCATCTGCCAAG	0.657													6	103					0.000442599	0.00445669	0.000442599	1	0
C2CD2	25966	broad.mit.edu	37	21	43339023	43339023	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:43339023C>G	uc002yzw.2	-	4	781	c.539G>C	c.(538-540)TGG>TCG	p.W180S	C2CD2_uc002yzu.2_Missense_Mutation_p.W12S|C2CD2_uc002yzv.2_Missense_Mutation_p.W25S|C2CD2_uc002yzx.1_Missense_Mutation_p.W25S	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	180						cytosol|extracellular region|nucleus				ovary(1)	1						GATGAAAGACCAGCTAATCTG	0.458													4	117					0	0	0.000157383	0	0
UBASH3A	53347	broad.mit.edu	37	21	43862570	43862570	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:43862570C>A	uc002zbe.2	+	12	1531	c.1495C>A	c.(1495-1497)CTG>ATG	p.L499M	UBASH3A_uc002zbf.2_Missense_Mutation_p.L461M|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Missense_Mutation_p.L461M	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	499	Phosphatase-like.					cytosol|nucleus				ovary(3)	3						AGAACTCAAACTGGAGAAAAA	0.428													6	183					0.000442599	0.00445669	0.000442599	1	0
AGPAT3	56894	broad.mit.edu	37	21	45389111	45389111	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:45389111C>A	uc002zdv.2	+	5	683	c.461C>A	c.(460-462)ACC>AAC	p.T154N	AGPAT3_uc002zdw.2_Missense_Mutation_p.T154N|AGPAT3_uc002zdx.2_Missense_Mutation_p.T241N|AGPAT3_uc002zdy.2_Missense_Mutation_p.T92N	NM_020132	NP_064517	Q9NRZ7	PLCC_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 3	154	Lumenal (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	1-acylglycerol-3-phosphate O-acyltransferase activity				0				STAD - Stomach adenocarcinoma(101;0.18)|Colorectal(79;0.24)		GACCGGGACACCGTGGTCGAA	0.632													5	92					0.000157383	0.00173811	0.000157383	1	0
AGPAT3	56894	broad.mit.edu	37	21	45391317	45391317	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:45391317C>G	uc002zdv.2	+	7	935	c.713C>G	c.(712-714)CCG>CGG	p.P238R	AGPAT3_uc002zdw.2_Missense_Mutation_p.P238R|AGPAT3_uc002zdx.2_Missense_Mutation_p.P325R|AGPAT3_uc002zdy.2_Missense_Mutation_p.P176R	NM_020132	NP_064517	Q9NRZ7	PLCC_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 3	238	Lumenal (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	1-acylglycerol-3-phosphate O-acyltransferase activity				0				STAD - Stomach adenocarcinoma(101;0.18)|Colorectal(79;0.24)		AACAAGAACCCGTCCCTGCTG	0.607													5	128					0	0	0.000157383	0	0
TRAPPC10	7109	broad.mit.edu	37	21	45513964	45513964	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:45513964G>C	uc002zea.2	+	20	3187	c.3018G>C	c.(3016-3018)TCG>TCC	p.S1006S	TRAPPC10_uc010gpo.2_Silent_p.S717S|TRAPPC10_uc011afa.1_Silent_p.S384S|TRAPPC10_uc011afb.1_Silent_p.S111S	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	1006					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						GCAAGCAGTCGGTGTTCTTCG	0.542													5	148					0	0	0.000274275	0	0
C21orf33	8209	broad.mit.edu	37	21	45563213	45563213	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:45563213G>C	uc002zec.3	+	6	734	c.648G>C	c.(646-648)CTG>CTC	p.L216L	C21orf33_uc002zed.3_Silent_p.L185L	NM_004649	NP_004640	P30042	ES1_HUMAN	es1 protein isoform Ia precursor	216						mitochondrion				ovary(1)	1				STAD - Stomach adenocarcinoma(101;0.168)|Colorectal(79;0.191)		TCAAGGCCCTGGGTGCCAAGC	0.647													3	36					0	0	0.000602214	0	0
PFKL	5211	broad.mit.edu	37	21	45736184	45736184	+	Missense_Mutation	SNP	C	G	G	rs150642566		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:45736184C>G	uc002zel.2	+	8	864	c.805C>G	c.(805-807)CGC>GGC	p.R269G	PFKL_uc002zek.2_Missense_Mutation_p.R316G	NM_002626	NP_002617	P17858	K6PL_HUMAN	liver phosphofructokinase	269					fructose 6-phosphate metabolic process|glycolysis|protein oligomerization	6-phosphofructokinase complex	6-phosphofructokinase activity|ATP binding|fructose-6-phosphate binding|identical protein binding|kinase binding|metal ion binding				0				Colorectal(79;0.0811)		TGCCATTGACCGCAACGGGAA	0.642													4	77					0	0	3.59834e-05	0	0
KRTAP10-12	386685	broad.mit.edu	37	21	46117695	46117695	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:46117695C>A	uc002zfw.1	+	1	609	c.579C>A	c.(577-579)TCC>TCA	p.S193S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198699	NP_941972	P60413	KR10C_HUMAN	keratin associated protein 10-12	193	19 X 5 AA repeats of C-C-X(3).					keratin filament					0						GACCCTCCTCCTCCGTGTCCC	0.692													8	174					1.12685e-05	0.000138146	0.000274275	1	0
POFUT2	23275	broad.mit.edu	37	21	46698062	46698062	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:46698062C>G	uc002zhc.2	-	5	686	c.661G>C	c.(661-663)GAG>CAG	p.E221Q	POFUT2_uc002zha.2_5'Flank|POFUT2_uc002zhb.2_RNA|POFUT2_uc002zhd.2_Missense_Mutation_p.E221Q	NM_133635	NP_598368	Q9Y2G5	OFUT2_HUMAN	protein O-fucosyltransferase 2 isoform C	221					fucose metabolic process	endoplasmic reticulum	peptide-O-fucosyltransferase activity				0				Colorectal(79;0.243)		AGTAGGTTCTCGGCTCTGTCT	0.418													4	203					0	0	3.59834e-05	0	0
MCM3AP	8888	broad.mit.edu	37	21	47687015	47687015	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:47687015C>G	uc002zir.1	-	10	2706	c.2670G>C	c.(2668-2670)ACG>ACC	p.T890T	MCM3AP_uc002ziq.1_5'Flank	NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	890					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					GTGTGCTCACCGTGTACGCAA	0.577													3	63					0	0	3.59834e-05	0	0
MCM3AP	8888	broad.mit.edu	37	21	47700012	47700012	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:47700012G>C	uc002zir.1	-	4	1598	c.1562C>G	c.(1561-1563)CCA>CGA	p.P521R		NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	521					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					ACCGTCACCTGGTTTCTTCTC	0.522													4	164					0	0	3.59834e-05	0	0
PCNT	5116	broad.mit.edu	37	21	47768942	47768942	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr21:47768942G>T	uc002zji.3	+	7	1156	c.1049G>T	c.(1048-1050)TGG>TTG	p.W350L	PCNT_uc002zjj.2_Missense_Mutation_p.W232L|PCNT_uc010gqk.1_RNA	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	350	Glu-rich.|Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					AAGGAAGATTGGGAATCTGAA	0.308													11	306					2.31682e-05	0.000280436	0.000308642	1	0
POTEH	23784	broad.mit.edu	37	22	16267062	16267062	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:16267062G>T	uc010gqp.2	-	9	1439	c.1387C>A	c.(1387-1389)CAT>AAT	p.H463N	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Missense_Mutation_p.H182N|POTEH_uc002zlj.1_Missense_Mutation_p.H298N	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	463										skin(1)	1						AATCCCATATGAGTACTTCCG	0.378													14	398					1.2644e-06	1.61136e-05	0.000175454	1	0
POTEH	23784	broad.mit.edu	37	22	16279248	16279248	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:16279248C>T	uc010gqp.2	-	4	1027	c.975G>A	c.(973-975)GTG>GTA	p.V325V	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Silent_p.V44V|POTEH_uc002zlj.1_Silent_p.V160V	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	325	ANK 5.									skin(1)	1						TTAAAAATTTCACCACTTGCT	0.328													21	746					0	0	0.000295444	0	0
IL17RA	23765	broad.mit.edu	37	22	17583192	17583192	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:17583192G>C	uc002zly.2	+	7	895	c.762G>C	c.(760-762)GCG>GCC	p.A254A	IL17RA_uc010gqt.2_Silent_p.A254A	NM_014339	NP_055154	Q96F46	I17RA_HUMAN	interleukin 17A receptor precursor	254	Extracellular (Potential).				fibroblast activation|positive regulation of interleukin-23 production	integral to plasma membrane	interleukin-17 receptor activity			skin(2)	2		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)		Colorectal(9;0.241)		ACATACCTGCGGTAACTCTGC	0.527													5	117					0	0	0.000602214	0	0
MICAL3	57553	broad.mit.edu	37	22	18368778	18368778	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:18368778G>T	uc002zng.3	-	16	2460	c.2107C>A	c.(2107-2109)CTG>ATG	p.L703M	MICAL3_uc011agl.1_Missense_Mutation_p.L703M|MICAL3_uc002znh.2_Missense_Mutation_p.L703M|MICAL3_uc002znj.1_Missense_Mutation_p.L403M|MICAL3_uc002znk.1_Missense_Mutation_p.L703M|MICAL3_uc002znl.1_Missense_Mutation_p.L336M|MICAL3_uc002znm.2_Missense_Mutation_p.L204M|MICAL3_uc010grf.2_Missense_Mutation_p.L703M	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	703						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		GTGCTCACCAGGGTCGGTCTT	0.587													7	128					0.000442599	0.00445669	0.000442599	1	0
DGCR8	54487	broad.mit.edu	37	22	20077223	20077223	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:20077223C>G	uc002zri.2	+	4	1262	c.912C>G	c.(910-912)CCC>CCG	p.P304P	DGCR8_uc010grz.2_Silent_p.P304P|DGCR8_uc002zrj.2_5'UTR	NM_022720	NP_073557	Q8WYQ5	DGCR8_HUMAN	DiGeorge syndrome critical region gene 8	304	Necessary for heme-binding and pri-miRNA processing.|Necessary for interaction with NCL.|WW.				primary miRNA processing	cytoplasm|cytoplasm|microtubule cytoskeleton|nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding				0	Colorectal(54;0.0993)					AGCCGCTGCCCGACGGGTGGA	0.547													4	100					0	0	3.59834e-05	0	0
SERPIND1	3053	broad.mit.edu	37	22	21138281	21138281	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:21138281C>G	uc002ztb.1	+	3	978	c.911C>G	c.(910-912)CCA>CGA	p.P304R	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Missense_Mutation_p.P332R	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	304					blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	AATAAATTCCCAGTGGAAATG	0.413											OREG0026325	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	175					0	0	0.000274275	0	0
SNAP29	9342	broad.mit.edu	37	22	21235396	21235396	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:21235396C>A	uc011ahw.1	+	3	601	c.494C>A	c.(493-495)CCA>CAA	p.P165Q		NM_004782	NP_004773	O95721	SNP29_HUMAN	synaptosomal-associated protein 29	165					cellular membrane fusion|exocytosis|protein transport|vesicle targeting	cell junction|cytoplasm|nucleus|synapse|synaptosome	SNAP receptor activity				0	all_cancers(11;2.77e-25)|all_epithelial(7;8.92e-24)|Lung NSC(8;1.49e-15)|all_lung(8;2.54e-14)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000592)|Lung(15;0.0117)			GCCAGCCACCCAAACCTTAGA	0.428													5	50					0.000157383	0.00173811	0.000157383	1	0
LOC96610	96610	broad.mit.edu	37	22	22664186	22664186	+	RNA	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:22664186A>G	uc011aim.1	+	30		c.2043A>G			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						CAGATCAAGAAAGCACTCTGA	0.498													5	106					0	0	0.00010058	0	0
PRAME	23532	broad.mit.edu	37	22	22890547	22890547	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:22890547C>G	uc002zwf.2	-	5	1628	c.1472G>C	c.(1471-1473)GGG>GCG	p.G491A	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Missense_Mutation_p.G475A|PRAME_uc010gtr.2_Missense_Mutation_p.G491A|PRAME_uc002zwg.2_Missense_Mutation_p.G491A|PRAME_uc002zwh.2_Missense_Mutation_p.G491A|PRAME_uc002zwi.2_Missense_Mutation_p.G491A|PRAME_uc002zwj.2_Missense_Mutation_p.G491A|PRAME_uc002zwk.2_Missense_Mutation_p.G491A	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	491	Mediates interaction with RARA.				apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		GGTTCTGTCCCCACAGTGAGG	0.557													4	110					0	0	3.59834e-05	0	0
LOC96610	96610	broad.mit.edu	37	22	23243367	23243367	+	RNA	SNP	T	C	C	rs8033	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:23243367T>C	uc011aim.1	+	369		c.15694T>C			uc002zws.2_Intron					Parts of antibodies, mostly variable regions.												0						CCAGCAGCTATCTGAGCCTGA	0.587													6	35					0	0	3.59834e-05	0	0
C22orf36	388886	broad.mit.edu	37	22	24982253	24982253	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:24982253C>G	uc003aaq.2	-	4	578	c.549G>C	c.(547-549)GCG>GCC	p.A183A	GGT1_uc003aan.1_Intron|C22orf36_uc003aao.2_RNA|C22orf36_uc003aap.2_RNA	NM_207644	NP_997527	Q2VPJ9	LRC6X_HUMAN	hypothetical protein LOC388886	183	LRR 1.										0						GGTCCAGCACCGCCAGCACAG	0.652													4	117					0	0	3.59834e-05	0	0
C22orf36	388886	broad.mit.edu	37	22	24984230	24984230	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:24984230G>C	uc003aaq.2	-	3	403	c.374C>G	c.(373-375)TCG>TGG	p.S125W	GGT1_uc003aan.1_Intron|C22orf36_uc003aao.2_RNA|C22orf36_uc003aap.2_RNA	NM_207644	NP_997527	Q2VPJ9	LRC6X_HUMAN	hypothetical protein LOC388886	125											0						CTGCTGCTTCGAGTGAGGGGT	0.602													3	63					0	0	6.4e-05	0	0
PIWIL3	440822	broad.mit.edu	37	22	25147427	25147427	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:25147427C>A	uc003abd.1	-	9	1433	c.1016G>T	c.(1015-1017)TGG>TTG	p.W339L	PIWIL3_uc011ajx.1_Missense_Mutation_p.W230L|PIWIL3_uc011ajy.1_Missense_Mutation_p.W230L|PIWIL3_uc010gut.1_Missense_Mutation_p.W339L	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	339	PAZ.				cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						ATTCTGCTTCCAATCAATATC	0.333													11	246					3.52763e-06	4.40851e-05	0.000566183	1	0
HPS4	89781	broad.mit.edu	37	22	26849216	26849216	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:26849216C>A	uc003acl.2	-	14	2769	c.2110G>T	c.(2110-2112)GGG>TGG	p.G704W	HPS4_uc003aci.2_Missense_Mutation_p.G699W|HPS4_uc003acj.2_Missense_Mutation_p.G568W|HPS4_uc003ack.2_Missense_Mutation_p.G495W|HPS4_uc003acn.2_Missense_Mutation_p.G550W|HPS4_uc003ach.2_Missense_Mutation_p.G439W	NM_022081	NP_071364	Q9NQG7	HPS4_HUMAN	light ear protein isoform a	704					lysosome organization|positive regulation of eye pigmentation|protein stabilization|protein targeting	lysosome|melanosome|membrane fraction|platelet dense granule	protein homodimerization activity				0						AAGTTCACCCCGTGCTTCAGC	0.552									Hermansky-Pudlak_syndrome				7	171					0.000673444	0.00655963	0.000673444	1	0
TFIP11	24144	broad.mit.edu	37	22	26899725	26899725	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:26899725C>A	uc003acr.2	-	6	929	c.555G>T	c.(553-555)AAG>AAT	p.K185N	TFIP11_uc003acs.2_Missense_Mutation_p.K185N|TFIP11_uc003act.2_Missense_Mutation_p.K185N	NM_012143	NP_036275	Q9UBB9	TFP11_HUMAN	tuftelin interacting protein 11	185	G-patch.				biomineral tissue development	catalytic step 2 spliceosome|cytoplasm|nuclear speck	DNA binding|sequence-specific DNA binding transcription factor activity				0						CACCTTTTCCCTTTCTCTGCT	0.458													7	88					0.000442599	0.00445669	0.000442599	1	0
CHEK2	11200	broad.mit.edu	37	22	29106043	29106043	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:29106043G>C	uc003adu.1	-	7	869	c.797C>G	c.(796-798)CCA>CGA	p.P266R	CHEK2_uc003ads.1_Missense_Mutation_p.P45R|CHEK2_uc010gvh.1_Missense_Mutation_p.P175R|CHEK2_uc010gvi.1_Missense_Mutation_p.P266R|CHEK2_uc010gvj.1_Intron|CHEK2_uc003adr.1_RNA|CHEK2_uc010gvk.1_RNA|CHEK2_uc003adt.1_Missense_Mutation_p.P309R|CHEK2_uc003adv.1_Missense_Mutation_p.P266R|CHEK2_uc003adw.1_Missense_Mutation_p.P266R|CHEK2_uc003adx.1_Missense_Mutation_p.P45R|CHEK2_uc003ady.1_Missense_Mutation_p.P266R|CHEK2_uc003adz.1_Missense_Mutation_p.P70R	NM_007194	NP_009125	O96017	CHK2_HUMAN	protein kinase CHK2 isoform a	266	Protein kinase.				cell cycle|DNA damage checkpoint|DNA damage response, signal transduction resulting in induction of apoptosis|replicative senescence	PML body	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(17)|stomach(1)|ovary(1)|lung(1)	20						ATTGAGAGCTGGGTCCTTTGA	0.274			F			breast 		Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes	Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|CHEK2-associated_cancer				4	156					0	0	0.000157383	0	0
GAS2L1	10634	broad.mit.edu	37	22	29704305	29704305	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:29704305C>T	uc003afa.1	+	2	409	c.210C>T	c.(208-210)ACC>ACT	p.T70T	GAS2L1_uc010gvm.1_Silent_p.T70T|GAS2L1_uc003afb.1_Silent_p.T70T|GAS2L1_uc003afc.1_Silent_p.T70T|GAS2L1_uc003afd.1_Silent_p.T70T|GAS2L1_uc003afe.1_Silent_p.T70T	NM_152236	NP_689422	Q99501	GA2L1_HUMAN	growth arrest-specific 2 like 1 isoform a	70	CH.				cell cycle arrest	cytoplasm|cytoskeleton					0						ACGCCGTGACCGAGGCTGCCC	0.687													3	12					0	0	6.4e-05	0	0
NEFH	4744	broad.mit.edu	37	22	29885826	29885826	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:29885826C>G	uc003afo.2	+	4	2268	c.2197C>G	c.(2197-2199)CCC>GCC	p.P733A	NEFH_uc003afp.2_5'UTR	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	739	30 X 6 AA repeats of K-S-P-[AEPV]-[EAK]- [AEVK].|Tail.				cell death|nervous system development	neurofilament					0						AGCAAAGACCCCCGAGAAGGC	0.547													4	152					0	0	0.00024832	0	0
DEPDC5	9681	broad.mit.edu	37	22	32302357	32302357	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:32302357C>T	uc003als.2	+	42	4735	c.4593C>T	c.(4591-4593)GCC>GCT	p.A1531A	DEPDC5_uc011als.1_Silent_p.A1462A|DEPDC5_uc011alu.1_Silent_p.A1562A|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Silent_p.A1553A|DEPDC5_uc003alu.2_Silent_p.A980A|DEPDC5_uc003alv.2_RNA|DEPDC5_uc003alw.2_Silent_p.A829A|DEPDC5_uc011alx.1_Silent_p.A379A|DEPDC5_uc010gwk.2_Missense_Mutation_p.H567Y|DEPDC5_uc011aly.1_Silent_p.A379A	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	1531					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						GCTCCAGCGCCACAGGGGATG	0.567													6	128					0	0	3.59834e-05	0	0
RFPL2	10739	broad.mit.edu	37	22	32587262	32587262	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:32587262G>T	uc003amg.3	-	5	1570	c.634C>A	c.(634-636)CGC>AGC	p.R212S	RFPL2_uc003ame.3_Missense_Mutation_p.R151S|RFPL2_uc003amf.3_Missense_Mutation_p.R122S|RFPL2_uc003amh.3_Missense_Mutation_p.R122S	NM_001098527	NP_001091997	O75678	RFPL2_HUMAN	ret finger protein-like 2 isoform 2	212	B30.2/SPRY.						zinc ion binding			skin(1)	1						TGTCTGATGCGCCCACTTCGG	0.542													5	89					0.000274275	0.00290969	0.000274275	1	0
C22orf28	51493	broad.mit.edu	37	22	32792066	32792066	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:32792066G>C	uc003amm.2	-	8	1116	c.985C>G	c.(985-987)CGT>GGT	p.R329G	C22orf28_uc011ama.1_RNA	NM_014306	NP_055121	Q9Y3I0	RTCB_HUMAN	hypothetical protein LOC51493	329					cell-matrix adhesion|substrate adhesion-dependent cell spreading|tRNA splicing, via endonucleolytic cleavage and ligation	cytoplasm|tRNA-splicing ligase complex	ATP binding|metal ion binding|RNA ligase (ATP) activity|vinculin binding				0						TGTACCTGACGGGTTAAGAAG	0.433													4	201					0	0	0.00024832	0	0
FBXO7	25793	broad.mit.edu	37	22	32894240	32894240	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:32894240C>G	uc003amq.2	+	9	1575	c.1292C>G	c.(1291-1293)CCT>CGT	p.P431R	FBXO7_uc003amr.2_Missense_Mutation_p.P317R|FBXO7_uc003ams.2_Missense_Mutation_p.P275R|FBXO7_uc003amt.2_Missense_Mutation_p.P352R|FBXO7_uc003amu.2_Missense_Mutation_p.P317R|FBXO7_uc003amv.2_Missense_Mutation_p.P130R	NM_012179	NP_036311	Q9Y3I1	FBX7_HUMAN	F-box only protein 7 isoform 1	431					cell death|regulation of protein stability|ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(1)	1						CCCTTGCACCCTAGGCCATTT	0.502													4	117					0	0	0.000157383	0	0
MCM5	4174	broad.mit.edu	37	22	35804513	35804513	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:35804513C>A	uc003anu.3	+	6	803	c.709C>A	c.(709-711)CCC>ACC	p.P237T	MCM5_uc010gwr.2_Missense_Mutation_p.P46T|MCM5_uc003anv.3_Missense_Mutation_p.P194T|MCM5_uc010gws.1_RNA|MCM5_uc003anw.1_5'Flank	NM_006739	NP_006730	P33992	MCM5_HUMAN	minichromosome maintenance complex component 5	237					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)	1						TGATGCAGTCCCCCACGGGGA	0.612													5	39					8.12818e-05	0.000938396	8.12818e-05	1	0
APOL2	23780	broad.mit.edu	37	22	36623630	36623630	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:36623630G>A	uc003aoz.2	-	5	1170	c.834C>T	c.(832-834)GCC>GCT	p.A278A	APOL2_uc011amm.1_Silent_p.A390A|APOL2_uc003apa.2_Silent_p.A278A	NM_030882	NP_112092	Q9BQE5	APOL2_HUMAN	apolipoprotein L2	278					acute-phase response|cholesterol metabolic process|lipid transport|lipoprotein metabolic process|maternal process involved in female pregnancy|multicellular organismal development	endoplasmic reticulum membrane|extracellular region	high-density lipoprotein particle binding|lipid binding|receptor binding				0						TGCCTCCAGTGGCTGCACCCA	0.552													5	128					0	0	0.000602214	0	0
MYH9	4627	broad.mit.edu	37	22	36690179	36690179	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:36690179G>T	uc003apg.2	-	28	4027	c.3796C>A	c.(3796-3798)CGC>AGC	p.R1266S		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1266	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						GTGCGCACGCGCTCTCCCTCG	0.657			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				5	97					0.000442599	0.00445669	0.000442599	1	0
TMPRSS6	164656	broad.mit.edu	37	22	37494464	37494464	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:37494464G>T	uc003aqs.1	-	3	469	c.355C>A	c.(355-357)CAG>AAG	p.Q119K	TMPRSS6_uc003aqt.1_Missense_Mutation_p.Q110K|TMPRSS6_uc003aqu.2_Missense_Mutation_p.Q110K	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	119	Extracellular (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						ACCATCTTCTGGGCTTTGGCG	0.562													9	205					0.000978159	0.00917326	0.000978159	1	0
TRIOBP	11078	broad.mit.edu	37	22	38119551	38119551	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:38119551C>G	uc003atr.2	+	7	1259	c.988C>G	c.(988-990)CCC>GCC	p.P330A	TRIOBP_uc003atu.2_Missense_Mutation_p.P158A|TRIOBP_uc003atq.1_Missense_Mutation_p.P330A|TRIOBP_uc003ats.1_Missense_Mutation_p.P158A	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	330					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					AGAGGACACCCCCAGGGCCTC	0.587													5	120					0	0	8.12818e-05	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121705	38121705	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:38121705G>T	uc003atr.2	+	7	3413	c.3142G>T	c.(3142-3144)GAG>TAG	p.E1048*	TRIOBP_uc003atu.2_Nonsense_Mutation_p.E876*|TRIOBP_uc003atq.1_Nonsense_Mutation_p.E1048*|TRIOBP_uc003ats.1_Nonsense_Mutation_p.E876*	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1048					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CCGCGCCCCTGAGAGTGAACC	0.672													7	129					5.50884e-06	6.81381e-05	0.00010058	1	0
KDELR3	11015	broad.mit.edu	37	22	38875643	38875643	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:38875643G>T	uc003avv.2	+	3	394	c.238G>T	c.(238-240)GGG>TGG	p.G80W	KDELR3_uc003avu.2_Missense_Mutation_p.G80W	NM_006855	NP_006846	O43731	ERD23_HUMAN	KDEL receptor 3 isoform a	80	Helical; (Potential).				protein retention in ER lumen|protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|integral to membrane	ER retention sequence binding|receptor activity			ovary(2)	2	Melanoma(58;0.0286)					CATGATATATGGGAAATTCCG	0.428													8	170					0.000157383	0.00173811	0.000157383	1	0
CBX7	23492	broad.mit.edu	37	22	39534694	39534694	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:39534694G>T	uc003axb.2	-	4	282	c.193C>A	c.(193-195)CGA>AGA	p.R65R	CBX7_uc003axc.2_Silent_p.R65R	NM_175709	NP_783640	O95931	CBX7_HUMAN	chromobox homolog 7	65	Chromo.				chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear chromatin|PcG protein complex				ovary(1)	1	Melanoma(58;0.04)					CCCGATGCTCGGTCTCTCTCC	0.592													4	64					0.000157383	0.00173811	0.000157383	1	0
MGAT3	4248	broad.mit.edu	37	22	39884189	39884189	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:39884189C>G	uc003axv.3	+	2	1076	c.837C>G	c.(835-837)CCC>CCG	p.P279P	MGAT3_uc010gxy.2_Silent_p.P279P	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	279	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					ACTTCCCGCCCGGCGGCCGGC	0.677													4	128					0	0	0.00024832	0	0
SMCR7L	54471	broad.mit.edu	37	22	39907868	39907868	+	Silent	SNP	G	T	T	rs144509053	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:39907868G>T	uc003axx.2	+	4	657	c.159G>T	c.(157-159)GCG>GCT	p.A53A	SMCR7L_uc003axw.2_Silent_p.A53A|SMCR7L_uc010gxz.1_5'UTR|SMCR7L_uc003axy.2_5'UTR	NM_019008	NP_061881	Q9NQG6	SMC7L_HUMAN	hypothetical protein LOC54471	53						integral to membrane|mitochondrion				central_nervous_system(1)	1	Melanoma(58;0.04)					ACGATCGGGCGATCAGTGCCC	0.557													13	74					2.61681e-11	3.49383e-10	0.000219431	1	0
CACNA1I	8911	broad.mit.edu	37	22	40060863	40060863	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:40060863C>G	uc003ayc.2	+	21	3786	c.3786C>G	c.(3784-3786)GCC>GCG	p.A1262A	CACNA1I_uc003ayd.2_Silent_p.A1227A|CACNA1I_uc003aye.2_Silent_p.A1177A|CACNA1I_uc003ayf.2_Silent_p.A1142A	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1262	Helical; Name=S3 of repeat III; (Potential).|III.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	TGGCCTCAGCCGGGGGAGCCA	0.642													4	39					0	0	3.59834e-05	0	0
ACO2	50	broad.mit.edu	37	22	41918986	41918986	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:41918986G>C	uc003bac.2	+	10	1313	c.1291G>C	c.(1291-1293)GGC>CGC	p.G431R	ACO2_uc003bad.2_Missense_Mutation_p.G456R	NM_001098	NP_001089	Q99798	ACON_HUMAN	aconitase 2, mitochondrial precursor	431					citrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron ion binding|isocitrate hydro-lyase (cis-aconitate-forming) activity			breast(2)|ovary(1)|lung(1)	4						TGAGCGGGACGGCTATGTGAG	0.642													10	75					0	0	0.000442599	0	0
MEI1	150365	broad.mit.edu	37	22	42159315	42159315	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:42159315C>A	uc003baz.1	+	19	2283	c.2258C>A	c.(2257-2259)ACA>AAA	p.T753K	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc011apd.1_RNA|MEI1_uc003bbb.1_Missense_Mutation_p.T139K|MEI1_uc003bbc.1_Missense_Mutation_p.T121K|MEI1_uc010gym.1_Missense_Mutation_p.T121K|MEI1_uc003bbd.1_Intron	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	753							binding			central_nervous_system(1)|skin(1)	2						AAAGACAATACACTACGTGAG	0.522											OREG0026596	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	83					0.000442599	0.00445669	0.000442599	1	0
TCF20	6942	broad.mit.edu	37	22	42609208	42609208	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:42609208G>T	uc003bcj.1	-	1	2238	c.2104C>A	c.(2104-2106)CCT>ACT	p.P702T	TCF20_uc003bck.1_Missense_Mutation_p.P702T|TCF20_uc003bnt.2_Missense_Mutation_p.P702T	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	702					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						AGACTTCCAGGAGATTTGCTA	0.507													8	173					7.48243e-07	9.56199e-06	0.000442599	1	0
TTLL1	25809	broad.mit.edu	37	22	43465747	43465747	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:43465747G>C	uc003bdi.2	-	4	458	c.217C>G	c.(217-219)CGG>GGG	p.R73G	TTLL1_uc010gzh.2_Missense_Mutation_p.R73G|TTLL1_uc003bdj.2_5'UTR|TTLL1_uc003bdh.2_Missense_Mutation_p.R35G	NM_012263	NP_036395	O95922	TTLL1_HUMAN	tubulin tyrosine ligase-like family, member 1	73	TTL.				protein polyglutamylation	cytoplasm|microtubule	ATP binding|tubulin-glutamic acid ligase activity|tubulin-tyrosine ligase activity			skin(1)	1		Ovarian(80;0.0694)		BRCA - Breast invasive adenocarcinoma(115;0.00461)		AGGTCCTTCCGGGTCAGTTCA	0.443													4	148					0	0	0.000602214	0	0
SCUBE1	80274	broad.mit.edu	37	22	43658763	43658763	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:43658763G>T	uc003bdt.1	-	5	661	c.573C>A	c.(571-573)CCC>CCA	p.P191P	SCUBE1_uc003bdu.1_Silent_p.P191P	NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	191	EGF-like 4 (Potential).				adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				GGTCAAAGCCGGGCCTGCAGT	0.577													5	72					0.000442599	0.00445669	0.000442599	1	0
SMC1B	27127	broad.mit.edu	37	22	45749929	45749929	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:45749929G>C	uc003bgc.2	-	21	3254	c.3202C>G	c.(3202-3204)CAG>GAG	p.Q1068E	SMC1B_uc003bgd.2_Missense_Mutation_p.Q1068E	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	1068					chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TCAAAACACTGGGTGAAAAGA	0.413													6	134					0	0	0.000157383	0	0
SMC1B	27127	broad.mit.edu	37	22	45750932	45750932	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:45750932G>T	uc003bgc.2	-	20	3077	c.3025C>A	c.(3025-3027)CAG>AAG	p.Q1009K	SMC1B_uc003bgd.2_Missense_Mutation_p.Q1009K	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	1009					chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		ATATCTTCCTGGGATGCTACT	0.453													8	147					3.09899e-07	4.00456e-06	0.000274275	1	0
SMC1B	27127	broad.mit.edu	37	22	45754594	45754594	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:45754594G>T	uc003bgc.2	-	19	2996	c.2944C>A	c.(2944-2946)CTA>ATA	p.L982I	SMC1B_uc003bgd.2_Missense_Mutation_p.L982I	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	982	Potential.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TCCTCTTTTAGAGAGCTGTAG	0.323													7	144					1.08611e-07	1.41337e-06	0.000978159	1	0
ATXN10	25814	broad.mit.edu	37	22	46125372	46125372	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:46125372C>G	uc003bgm.1	+	7	1053	c.796C>G	c.(796-798)CCT>GCT	p.P266A	ATXN10_uc011aqt.1_Missense_Mutation_p.P202A|ATXN10_uc003bgn.1_Missense_Mutation_p.P77A	NM_013236	NP_037368	Q9UBB4	ATX10_HUMAN	ataxin 10	266					cell death|neuron projection development	dendrite|neuronal cell body|perinuclear region of cytoplasm				ovary(1)|kidney(1)	2		Ovarian(80;0.00973)|all_neural(38;0.0417)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0223)		GGATGACATCCCTGTGTTTTT	0.458													4	84					0	0	3.59834e-05	0	0
PKDREJ	10343	broad.mit.edu	37	22	46657719	46657719	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:46657719C>G	uc003bhh.2	-	1	1501	c.1501G>C	c.(1501-1503)GGT>CGT	p.G501R		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	501	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		AGCATCTCACCACCTGAAGAA	0.373													5	374					0	0	0.000157383	0	0
GTSE1	51512	broad.mit.edu	37	22	46725290	46725290	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:46725290G>C	uc011aqy.1	+	11	2174	c.1962G>C	c.(1960-1962)GCG>GCC	p.A654A	GTSE1_uc011aqz.1_Silent_p.A501A|GTSE1_uc003bhn.2_RNA|uc011ara.1_5'Flank|uc003bho.3_5'Flank	NM_016426	NP_057510	Q9NYZ3	GTSE1_HUMAN	G-2 and S-phase expressed 1	635					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G2 phase of mitotic cell cycle|microtubule-based process	cytoplasmic microtubule				ovary(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00462)		AACCACTCGCGGTCACTCCAG	0.517													4	154					0	0	3.59834e-05	0	0
TBC1D22A	25771	broad.mit.edu	37	22	47507457	47507457	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:47507457C>G	uc003bib.2	+	12	1518	c.1383C>G	c.(1381-1383)CTC>CTG	p.L461L	TBC1D22A_uc010haf.2_Silent_p.L431L|TBC1D22A_uc003bic.2_Silent_p.L402L|TBC1D22A_uc003bie.2_Silent_p.L383L|TBC1D22A_uc003bid.2_RNA|TBC1D22A_uc010hag.2_RNA|TBC1D22A_uc003bif.2_Silent_p.L414L	NM_014346	NP_055161	Q8WUA7	TB22A_HUMAN	TBC1 domain family, member 22A	461						intracellular	protein homodimerization activity|Rab GTPase activator activity			ovary(1)	1		all_cancers(38;4.44e-05)|all_epithelial(38;0.000507)|Breast(42;0.0488)|all_lung(38;0.0682)|Ovarian(80;0.0731)|all_neural(38;0.0966)|Glioma(61;0.222)|Lung SC(80;0.236)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0347)|BRCA - Breast invasive adenocarcinoma(115;0.231)		CTGCTTTTCTCGTGAGATGGA	0.383													4	124					0	0	0.00024832	0	0
BRD1	23774	broad.mit.edu	37	22	50216761	50216761	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:50216761C>G	uc003biv.2	-	1	1692	c.1205G>C	c.(1204-1206)GGG>GCG	p.G402A	BRD1_uc011arf.1_5'UTR|BRD1_uc011arg.1_Missense_Mutation_p.G402A|BRD1_uc011arh.1_Missense_Mutation_p.G402A|BRD1_uc003biu.3_Missense_Mutation_p.G402A	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	402					histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		TTCGACATCCCCGTAAATATT	0.517													4	204					0	0	0.00024832	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50664313	50664313	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:50664313C>T	uc003bkb.1	-	10	2405	c.1893G>A	c.(1891-1893)GAG>GAA	p.E631E	TUBGCP6_uc010har.1_Silent_p.E631E|TUBGCP6_uc010has.1_RNA|TUBGCP6_uc010hat.1_5'Flank|TUBGCP6_uc003bkd.1_5'UTR	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	631					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		CCTTCAACTCCTCAAGGGAGA	0.597													4	58					0	0	3.59834e-05	0	0
PLXNB2	23654	broad.mit.edu	37	22	50727178	50727178	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:50727178C>G	uc003bkv.3	-	5	1480	c.1374G>C	c.(1372-1374)CAG>CAC	p.Q458H		NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	458	Extracellular (Potential).|Sema.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		TCACCTTGTCCTGGGTCATGG	0.607													3	38					0	0	3.59834e-05	0	0
SAPS2	9701	broad.mit.edu	37	22	50857387	50857387	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:50857387C>G	uc003blb.1	+	8	1132	c.710C>G	c.(709-711)CCG>CGG	p.P237R	SAPS2_uc003bky.1_Missense_Mutation_p.P237R|SAPS2_uc003bkz.1_Missense_Mutation_p.P237R|SAPS2_uc003blc.2_Missense_Mutation_p.P237R|SAPS2_uc003bla.1_Missense_Mutation_p.P237R	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	237						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		GAGCCAGACCCGCTCCTCACA	0.597													4	91					0	0	8.12818e-05	0	0
CPT1B	1375	broad.mit.edu	37	22	51009427	51009427	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:51009427G>C	uc003bmk.3	-	15	2083	c.1921C>G	c.(1921-1923)CAG>GAG	p.Q641E	CPT1B_uc003bml.2_Missense_Mutation_p.Q641E|CPT1B_uc003bmm.2_Missense_Mutation_p.Q641E|CPT1B_uc003bmo.2_Missense_Mutation_p.Q641E|CPT1B_uc011asa.1_Missense_Mutation_p.Q607E|CPT1B_uc003bmn.2_Missense_Mutation_p.Q641E|CPT1B_uc011asb.1_Missense_Mutation_p.Q560E|CHKB-CPT1B_uc003bmp.2_Missense_Mutation_p.Q436E|uc003bmr.1_5'Flank	NM_001145137	NP_001138609	Q92523	CPT1B_HUMAN	carnitine palmitoyltransferase 1B isoform a	641	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation|regulation of fatty acid oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		all cancers(3;3.56e-77)|OV - Ovarian serous cystadenocarcinoma(4;5.39e-74)|Epithelial(4;5.58e-70)|GBM - Glioblastoma multiforme(4;5.59e-08)|LUAD - Lung adenocarcinoma(64;0.0016)|Lung(4;0.00942)|BRCA - Breast invasive adenocarcinoma(115;0.207)		TACATATTCTGGTGCTTCTTA	0.567													4	164					0	0	3.59834e-05	0	0
CPT1B	1375	broad.mit.edu	37	22	51015339	51015339	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:51015339C>G	uc003bmk.3	-	3	568	c.406G>C	c.(406-408)GGG>CGG	p.G136R	CPT1B_uc003bml.2_Missense_Mutation_p.G136R|CPT1B_uc003bmm.2_Missense_Mutation_p.G136R|CPT1B_uc003bmo.2_Missense_Mutation_p.G136R|CPT1B_uc011asa.1_Missense_Mutation_p.G136R|CPT1B_uc003bmn.2_Missense_Mutation_p.G136R|CPT1B_uc011asb.1_Missense_Mutation_p.G136R|CHKB-CPT1B_uc003bmp.2_5'UTR	NM_001145137	NP_001138609	Q92523	CPT1B_HUMAN	carnitine palmitoyltransferase 1B isoform a	136	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation|regulation of fatty acid oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		all cancers(3;3.56e-77)|OV - Ovarian serous cystadenocarcinoma(4;5.39e-74)|Epithelial(4;5.58e-70)|GBM - Glioblastoma multiforme(4;5.59e-08)|LUAD - Lung adenocarcinoma(64;0.0016)|Lung(4;0.00942)|BRCA - Breast invasive adenocarcinoma(115;0.207)		AACATCCACCCATGGTAGCAG	0.582											OREG0026685	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	160					0	0	3.59834e-05	0	0
ACR	49	broad.mit.edu	37	22	51178184	51178184	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:51178184C>A	uc003bnh.3	+	3	356	c.344C>A	c.(343-345)CCA>CAA	p.P115Q	uc003bng.2_5'Flank|ACR_uc010hbh.1_Missense_Mutation_p.P115Q	NM_001097	NP_001088	P10323	ACRO_HUMAN	acrosin precursor	115	Peptidase S1.				acrosome matrix dispersal|activation of adenylate cyclase activity	acrosomal matrix|protein complex	amidase activity|copper ion binding|DNA binding|drug binding|fucose binding|mannose binding|protein binding|serine-type endopeptidase activity|zinc ion binding				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;1.1e-06)|LUAD - Lung adenocarcinoma(64;0.247)		AACAATAAACCAGTAAAGGCG	0.458													7	117					0.000157383	0.00173811	0.000157383	1	0
ITPR1	3708	broad.mit.edu	37	3	4732948	4732948	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:4732948C>G	uc003bqa.2	+	32	4270	c.3922C>G	c.(3922-3924)CAG>GAG	p.Q1308E	ITPR1_uc010hca.1_Missense_Mutation_p.Q1293E|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Missense_Mutation_p.Q239E	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1317	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		TCGGAATGTCCAGTATATAAA	0.403													3	41					0	0	0.00024832	0	0
ARPC4	10093	broad.mit.edu	37	3	9845566	9845566	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:9845566G>T	uc003bsz.1	+	5	949	c.370G>T	c.(370-372)GAG>TAG	p.E124*	ARPC4_uc003bta.1_Nonsense_Mutation_p.E34*|ARPC4_uc003btb.1_Nonsense_Mutation_p.E34*|ARPC4_uc003btc.1_Intron|TTLL3_uc003btd.3_Intron	NM_005718	NP_005709	P59998	ARPC4_HUMAN	actin related protein 2/3 complex subunit 4	124					actin filament polymerization|actin nucleation	Arp2/3 protein complex|cell projection|cytoplasm	actin binding				0	Medulloblastoma(99;0.227)					CTTCCACACAGAGCAGATGTA	0.483													9	223					0.000978159	0.00917326	0.000978159	1	0
PRRT3	285368	broad.mit.edu	37	3	9990562	9990562	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:9990562G>C	uc003bul.2	-	3	1181	c.1051C>G	c.(1051-1053)CCC>GCC	p.P351A	CIDEC_uc003bto.2_Intron|PRRT3_uc003buk.2_RNA|PRRT3_uc003bum.2_Missense_Mutation_p.P351A	NM_207351	NP_997234	Q5FWE3	PRRT3_HUMAN	proline-rich transmembrane protein 3 precursor	351	Extracellular (Potential).|Pro-rich.					integral to membrane					0						ACCCGCTGGGGGGAGATGGGG	0.582													4	107					0	0	3.59834e-05	0	0
SEC13	6396	broad.mit.edu	37	3	10354368	10354368	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:10354368C>G	uc003bvn.2	-	4	330	c.211G>C	c.(211-213)GGC>CGC	p.G71R	SEC13_uc003bvl.2_Missense_Mutation_p.G3R|SEC13_uc003bvm.2_Missense_Mutation_p.G57R|SEC13_uc003bvp.2_Missense_Mutation_p.G74R|SEC13_uc003bvo.2_Missense_Mutation_p.G117R|SEC13_uc003bvq.1_Missense_Mutation_p.G57R|SEC13_uc003bvr.1_Missense_Mutation_p.G57R|SEC13_uc011aul.1_Missense_Mutation_p.G71R	NM_183352	NP_899195	P55735	SEC13_HUMAN	SEC13 protein isoform 1	71	WD 2.				COPII vesicle coating|intracellular protein transport|mitotic prometaphase|mRNA transport|post-translational protein modification|protein N-linked glycosylation via asparagine|transmembrane transport	cytosol|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Nup107-160 complex	protein binding			ovary(1)	1						AGGATGTTGCCGTACATGGGG	0.572													4	77					0	0	8.12818e-05	0	0
ATP2B2	491	broad.mit.edu	37	3	10452344	10452344	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:10452344G>C	uc003bvt.2	-	3	794	c.355C>G	c.(355-357)CTG>GTG	p.L119V	ATP2B2_uc003bvv.2_Missense_Mutation_p.L119V|ATP2B2_uc003bvw.2_Missense_Mutation_p.L119V|ATP2B2_uc010hdp.2_Missense_Mutation_p.L119V|ATP2B2_uc010hdo.2_5'UTR	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	119	Extracellular (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GACAGCCCCAGGGAGATGATG	0.617													4	161					0	0	0.00024832	0	0
ATG7	10533	broad.mit.edu	37	3	11421450	11421450	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:11421450G>C	uc003bwc.2	+	17	1997	c.1880G>C	c.(1879-1881)CGG>CCG	p.R627P	ATG7_uc003bwd.2_Intron|ATG7_uc011aum.1_Missense_Mutation_p.R588P	NM_006395	NP_006386	O95352	ATG7_HUMAN	APG7 autophagy 7-like isoform a	627					autophagy|cellular membrane fusion|positive regulation of protein modification process|protein lipidation|protein transport	cytoplasm	APG12 activating enzyme activity|protein homodimerization activity|ubiquitin activating enzyme activity			central_nervous_system(1)	1						TTTTAGATCCGGGGATTTCTT	0.388													5	110					0	0	0.000602214	0	0
SYN2	6854	broad.mit.edu	37	3	12183495	12183495	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:12183495C>A	uc003bwm.2	+	7	690	c.526C>A	c.(526-528)CGG>AGG	p.R176R	SYN2_uc003bwl.1_Silent_p.R176R	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	176					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						AAAGGTTGTCCGGTAAGGGTC	0.493													6	204					0.000157383	0.00173811	0.000157383	1	0
SYN2	6854	broad.mit.edu	37	3	12192810	12192810	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:12192810C>G	uc003bwm.2	+	9	922	c.758C>G	c.(757-759)CCC>CGC	p.P253R	SYN2_uc003bwl.1_Missense_Mutation_p.P253R|SYN2_uc003bwn.2_5'UTR	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	253					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						ACATACTACCCCAACCACAAA	0.453													4	171					0	0	3.59834e-05	0	0
TSEN2	80746	broad.mit.edu	37	3	12571368	12571368	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:12571368C>A	uc003bxc.2	+	10	1631	c.1244C>A	c.(1243-1245)TCT>TAT	p.S415Y	TSEN2_uc003bwz.2_Missense_Mutation_p.S356Y|TSEN2_uc003bxa.2_Missense_Mutation_p.S389Y|TSEN2_uc011auq.1_Missense_Mutation_p.S389Y|TSEN2_uc003bxb.2_Missense_Mutation_p.S415Y|TSEN2_uc011aur.1_Missense_Mutation_p.S324Y	NM_025265	NP_079541	Q8NCE0	SEN2_HUMAN	tRNA-intron nuclease 2 isoform 1	415					mRNA processing|tRNA splicing, via endonucleolytic cleavage and ligation	cytoplasm|nucleolus|tRNA-intron endonuclease complex	nucleic acid binding|tRNA-intron endonuclease activity			central_nervous_system(1)	1						GTTAATGTCTCTAAGGTAACA	0.403													16	462					5.01169e-05	0.000591401	0.000566183	1	0
RAF1	5894	broad.mit.edu	37	3	12660099	12660099	+	Missense_Mutation	SNP	C	G	G	rs145611571		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:12660099C>G	uc003bxf.3	-	2	537	c.122G>C	c.(121-123)CGG>CCG	p.R41P	RAF1_uc011auu.1_5'UTR	NM_002880	NP_002871	P04049	RAF1_HUMAN	v-raf-1 murine leukemia viral oncogene homolog	41					activation of MAPKK activity|apoptosis|axon guidance|cell proliferation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of peptidyl-serine phosphorylation|Ras protein signal transduction|synaptic transmission	cytosol|mitochondrial outer membrane|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity		ESRP1/RAF1(4)|SRGAP3/RAF1(4)	central_nervous_system(4)|prostate(4)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)|liver(1)|ovary(1)	14					Sorafenib(DB00398)	ATCTGATGCCCGGCGCTGATA	0.458			T	SRGAP3	pilocytic astrocytoma				Noonan_syndrome				5	86					0	0	3.59834e-05	0	0
CAND2	23066	broad.mit.edu	37	3	12859029	12859029	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:12859029C>T	uc003bxk.2	+	10	2647	c.2598C>T	c.(2596-2598)CTC>CTT	p.L866L	CAND2_uc003bxj.2_Silent_p.L773L	NM_001162499	NP_001155971	O75155	CAND2_HUMAN	TBP-interacting protein isoform 1	866	HEAT 18.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			skin(3)|pancreas(1)	4						AGGCGGTGCTCCTGGAAGCTT	0.667													6	62					0	0	3.59834e-05	0	0
IQSEC1	9922	broad.mit.edu	37	3	12977071	12977071	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:12977071C>G	uc003bxt.2	-	3	1496	c.1487G>C	c.(1486-1488)CGG>CCG	p.R496P	IQSEC1_uc003bxu.3_Missense_Mutation_p.R374P|IQSEC1_uc011auw.1_Missense_Mutation_p.R482P	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	IQ motif and Sec7 domain 1 isoform b	496					regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1						CGTCTGCTCCCGCAGGCTGTC	0.582													4	90					0	0	0.000157383	0	0
FGD5	152273	broad.mit.edu	37	3	14862951	14862951	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:14862951C>G	uc003bzc.2	+	1	2483	c.2373C>G	c.(2371-2373)CCC>CCG	p.P791P	FGD5_uc011avk.1_Silent_p.P791P	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	791					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding	p.A791A(1)		ovary(3)|kidney(1)|pancreas(1)	5						AGATTCCACCCCGGAGACCTG	0.537													5	168					0	0	3.59834e-05	0	0
METTL6	131965	broad.mit.edu	37	3	15466506	15466506	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:15466506C>A	uc003bzs.1	-	3	574	c.316G>T	c.(316-318)GCC>TCC	p.A106S	METTL6_uc011avp.1_Intron|METTL6_uc003bzt.1_Missense_Mutation_p.A106S|EAF1_uc003bzu.2_5'Flank|EAF1_uc011avq.1_5'Flank	NM_152396	NP_689609	Q8TCB7	METL6_HUMAN	methyltransferase like 6	106							methyltransferase activity				0						CAGGCATAGGCAAAGATATTC	0.398													5	89					8.12818e-05	0.000938396	8.12818e-05	1	0
TBC1D5	9779	broad.mit.edu	37	3	17447927	17447927	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:17447927G>C	uc003cbf.2	-	5	1924	c.259C>G	c.(259-261)CGC>GGC	p.R87G	TBC1D5_uc010hev.2_Missense_Mutation_p.R87G|TBC1D5_uc003cbe.2_Missense_Mutation_p.R87G|TBC1D5_uc010hew.1_Missense_Mutation_p.R39G	NM_014744	NP_055559	Q92609	TBCD5_HUMAN	TBC1 domain family, member 5 isoform b	87	Rab-GAP TBC.					intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						CAAATGCTGCGGAACCTGCTG	0.398													4	43					0	0	0.000157383	0	0
SATB1	6304	broad.mit.edu	37	3	18419777	18419777	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:18419777G>T	uc003cbh.2	-	9	3195	c.1460C>A	c.(1459-1461)CCA>CAA	p.P487Q	SATB1_uc003cbi.2_Missense_Mutation_p.P487Q|SATB1_uc003cbj.2_Missense_Mutation_p.P487Q	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	487	CUT 2.				cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						ATTGTTCTCTGGTTTCCCATT	0.383													8	154					3.07112e-06	3.84493e-05	0.000978159	1	0
KCNH8	131096	broad.mit.edu	37	3	19551871	19551871	+	Nonsense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:19551871C>G	uc003cbk.1	+	12	2252	c.2057C>G	c.(2056-2058)TCA>TGA	p.S686*	KCNH8_uc010hex.1_Nonsense_Mutation_p.S147*	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	686	Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						TCAAGACTATCAAACAAATCT	0.373													3	49					0	0	0.000602214	0	0
NR1D2	9975	broad.mit.edu	37	3	23997564	23997564	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:23997564G>C	uc003ccs.2	+	3	639	c.320G>C	c.(319-321)GGG>GCG	p.G107A	NR1D2_uc010hfd.2_RNA|NR1D2_uc011awk.1_Missense_Mutation_p.G32A	NM_005126	NP_005117	Q14995	NR1D2_HUMAN	nuclear receptor subfamily 1, group D, member 2	107	NR C4-type.|Nuclear receptor.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			urinary_tract(1)|kidney(1)|skin(1)	3						AAAGTCTGTGGGGATGTGGCG	0.418													4	176					0	0	0.000157383	0	0
TOP2B	7155	broad.mit.edu	37	3	25657016	25657016	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:25657016G>A	uc011awn.1	-	26	3456	c.3413C>T	c.(3412-3414)CCT>CTT	p.P1138L	TOP2B_uc003cdj.2_Missense_Mutation_p.P1133L|TOP2B_uc011awm.1_5'UTR|TOP2B_uc010hff.1_Intron	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	1138					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TGGGCCTGAAGGAGTTCCTGA	0.333													7	31					0	0	8.12818e-05	0	0
SLC4A7	9497	broad.mit.edu	37	3	27427478	27427478	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:27427478G>T	uc003cdv.2	-	23	3441	c.3370C>A	c.(3370-3372)CTG>ATG	p.L1124M	SLC4A7_uc011awu.1_RNA|SLC4A7_uc011awv.1_RNA|SLC4A7_uc003cdu.3_Missense_Mutation_p.L1005M|SLC4A7_uc011aww.1_Missense_Mutation_p.L1133M|SLC4A7_uc011awx.1_Missense_Mutation_p.L1120M|SLC4A7_uc011awy.1_Missense_Mutation_p.L1116M|SLC4A7_uc011awz.1_RNA|SLC4A7_uc011axa.1_Missense_Mutation_p.L1005M|SLC4A7_uc011axb.1_Missense_Mutation_p.L1120M|SLC4A7_uc010hfl.2_Missense_Mutation_p.L674M|SLC4A7_uc003cdw.2_Missense_Mutation_p.L1000M	NM_003615	NP_003606	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate	1124	Cytoplasmic (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|central_nervous_system(1)|skin(1)	5						GTGAAACACAGGTCCATGAGT	0.274													9	233					9.7654e-05	0.00112694	0.000958276	1	0
OSBPL10	114884	broad.mit.edu	37	3	31789433	31789433	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:31789433C>G	uc003cev.2	-	6	1290	c.909G>C	c.(907-909)GCG>GCC	p.A303A	OSBPL10_uc003ceu.1_Silent_p.A60A|OSBPL10_uc011axf.1_Silent_p.A239A	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	303					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		TGGGCTGGCCCGCCTGGTGCA	0.607													4	113					0	0	3.59834e-05	0	0
CNOT10	25904	broad.mit.edu	37	3	32757720	32757720	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:32757720G>C	uc003cfc.1	+	6	832	c.577G>C	c.(577-579)GGT>CGT	p.G193R	CNOT10_uc011axi.1_5'UTR|CNOT10_uc003cfd.1_Missense_Mutation_p.G192R|CNOT10_uc003cfe.1_Missense_Mutation_p.G193R|CNOT10_uc010hfv.1_RNA|CNOT10_uc011axj.1_Missense_Mutation_p.G253R|CNOT10_uc010hfw.1_5'UTR	NM_015442	NP_056257	Q9H9A5	CNOTA_HUMAN	CCR4-NOT transcription complex, subunit 10	193					nuclear-transcribed mRNA poly(A) tail shortening	cytosol	protein binding			central_nervous_system(1)|skin(1)	2						CCTACAGACTGGTAATAACAA	0.224													8	211					0	0	0.000274275	0	0
CLASP2	23122	broad.mit.edu	37	3	33725860	33725860	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:33725860G>C	uc003cfu.2	-	6	989	c.635C>G	c.(634-636)CCC>CGC	p.P212R	CLASP2_uc010hgb.2_RNA	NM_015097	NP_055912	B2RTR1	B2RTR1_HUMAN	CLIP-associating protein 2	212										ovary(3)|central_nervous_system(1)	4						CCTAGCAGGGGGAATTCCTCT	0.318													4	202					0	0	0.000157383	0	0
ITGA9	3680	broad.mit.edu	37	3	37522991	37522991	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:37522991G>C	uc003chd.2	+	4	490	c.437G>C	c.(436-438)TGG>TCG	p.W146S	ITGA9_uc003chc.2_Missense_Mutation_p.W146S	NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	146	Extracellular (Potential).|FG-GAP 2.				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		GCTCATCGCTGGAAGAACATC	0.527													5	137					0	0	0.000157383	0	0
XYLB	9942	broad.mit.edu	37	3	38409687	38409687	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:38409687G>T	uc003cic.2	+	8	694	c.585G>T	c.(583-585)TTG>TTT	p.L195F	XYLB_uc011ayp.1_Missense_Mutation_p.L58F|XYLB_uc003cid.1_Missense_Mutation_p.L117F	NM_005108	NP_005099	O75191	XYLB_HUMAN	xylulokinase	195					D-xylose metabolic process|generation of precursor metabolites and energy|xylulose catabolic process		ATP binding|xylulokinase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.00372)|Kidney(284;0.00405)		GAATTTCTTTGGTCAGTAGCT	0.488													8	114					0.000673444	0.00655963	0.000673444	1	0
ACVR2B	93	broad.mit.edu	37	3	38519382	38519382	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:38519382C>G	uc003cif.2	+	3	315	c.291C>G	c.(289-291)CCC>CCG	p.P97P	ACVR2B_uc003cig.2_5'UTR	NM_001106	NP_001097	Q13705	AVR2B_HUMAN	activin A receptor, type IIB precursor	97	Extracellular (Potential).				activin receptor signaling pathway|anterior/posterior pattern formation|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|regulation of transcription, DNA-dependent	cell surface|cytoplasm|integral to plasma membrane	activin receptor activity|ATP binding|growth factor binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			lung(1)	1	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0565)|Kidney(284;0.071)		AGGAGAACCCCCAGGTGTACT	0.592													4	164					0	0	0.000157383	0	0
ACVR2B	93	broad.mit.edu	37	3	38522869	38522869	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:38522869G>T	uc003cif.2	+	8	1011	c.987G>T	c.(985-987)CTG>CTT	p.L329L	ACVR2B_uc003cig.2_Silent_p.L120L	NM_001106	NP_001097	Q13705	AVR2B_HUMAN	activin A receptor, type IIB precursor	329	Cytoplasmic (Potential).|Protein kinase.				activin receptor signaling pathway|anterior/posterior pattern formation|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|regulation of transcription, DNA-dependent	cell surface|cytoplasm|integral to plasma membrane	activin receptor activity|ATP binding|growth factor binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			lung(1)	1	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0565)|Kidney(284;0.071)		ATGTATTGCTGAAGAGCGACC	0.502													8	157					0.000978159	0.00917326	0.000978159	1	0
SCN5A	6331	broad.mit.edu	37	3	38592747	38592747	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:38592747G>C	uc003cio.2	-	28	5310	c.5116C>G	c.(5116-5118)CAG>GAG	p.Q1706E	SCN5A_uc003cin.2_Missense_Mutation_p.Q1705E|SCN5A_uc003cil.3_Missense_Mutation_p.Q1706E|SCN5A_uc010hhi.2_Missense_Mutation_p.Q1688E|SCN5A_uc010hhk.2_Missense_Mutation_p.Q1673E|SCN5A_uc011ayr.1_Missense_Mutation_p.Q1652E	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1706					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GTGGTGATCTGGAAGAGGCAC	0.597													4	122					0	0	0.000157383	0	0
SCN10A	6336	broad.mit.edu	37	3	38835447	38835447	+	Missense_Mutation	SNP	C	G	G	rs141810266		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:38835447C>G	uc003ciq.2	-	1	55	c.55G>C	c.(55-57)GAG>CAG	p.E19Q		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	19					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ACCAGTGACTCCGGAGTAAAG	0.458													4	107					0	0	0.00024832	0	0
SCN11A	11280	broad.mit.edu	37	3	38926799	38926799	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:38926799G>C	uc011ays.1	-	17	3243	c.3044C>G	c.(3043-3045)CCA>CGA	p.P1015R	SCN11A_uc010hhn.1_Missense_Mutation_p.P93R	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1015					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ACATCTCTCTGGTTGCTTTTT	0.428													3	33					0	0	6.4e-05	0	0
WDR48	57599	broad.mit.edu	37	3	39121287	39121287	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:39121287G>C	uc003cit.2	+	11	1171	c.1161G>C	c.(1159-1161)TGG>TGC	p.W387C	WDR48_uc011ayt.1_Missense_Mutation_p.W378C|WDR48_uc011ayu.1_Missense_Mutation_p.W305C|WDR48_uc011ayv.1_Intron|WDR48_uc003ciu.2_RNA	NM_020839	NP_065890	Q8TAF3	WDR48_HUMAN	WD repeat domain 48	387	WD 8.				interspecies interaction between organisms|protein deubiquitination	lysosome|nucleus	protein binding			ovary(1)|breast(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		TGGCATATTGGGATGTATTGA	0.289													4	155					0	0	0.000157383	0	0
CCDC13	152206	broad.mit.edu	37	3	42799644	42799644	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:42799644G>T	uc003cly.3	-	2	278	c.194C>A	c.(193-195)CCA>CAA	p.P65Q	CCDC13_uc003clz.2_Missense_Mutation_p.P65Q|CCDC13_uc011azq.1_Missense_Mutation_p.P65Q	NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	65	Potential.									ovary(1)	1						TTTCGAGTTTGGCTCCCCTGC	0.413													7	106					0.000274275	0.00290969	0.000274275	1	0
ZNF197	10168	broad.mit.edu	37	3	44673611	44673611	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:44673611G>T	uc003cnm.2	+	4	771	c.565G>T	c.(565-567)GAA>TAA	p.E189*	ZNF197_uc003cnn.2_Nonsense_Mutation_p.E189*|ZNF197_uc003cno.2_RNA|ZNF197_uc003cnp.2_Nonsense_Mutation_p.E189*	NM_006991	NP_008922	O14709	ZN197_HUMAN	zinc finger protein 197 isoform 1	189					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|skin(1)	4				KIRC - Kidney renal clear cell carcinoma(197;0.0478)|Kidney(197;0.0598)		TCCTGCCCCTGAAGCTTCTGC	0.483													11	264					3.27435e-08	4.29929e-07	0.000219431	1	0
KIF15	56992	broad.mit.edu	37	3	44893355	44893355	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:44893355C>G	uc003cnx.3	+	33	4032	c.3883C>G	c.(3883-3885)CAA>GAA	p.Q1295E	KIF15_uc010hiq.2_Missense_Mutation_p.Q1198E|KIF15_uc010hir.2_Missense_Mutation_p.Q343E	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	1295	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		CGAACGAACCCAAACTTTGGA	0.408													4	129					0	0	3.59834e-05	0	0
KLHL18	23276	broad.mit.edu	37	3	47376274	47376274	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:47376274G>A	uc003crd.2	+	6	989	c.863G>A	c.(862-864)GGA>GAA	p.G288E	KLHL18_uc003crc.2_Missense_Mutation_p.G288E|KLHL18_uc011bav.1_Missense_Mutation_p.G176E|KLHL18_uc010hjq.1_Missense_Mutation_p.G139E	NM_025010	NP_079286	O94889	KLH18_HUMAN	kelch-like 18	288											0		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00645)|Kidney(197;0.00741)		TCCATCGCTGGACTTATCTAC	0.587													8	27					0	0	0.000442599	0	0
DHX30	22907	broad.mit.edu	37	3	47870539	47870539	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:47870539C>T	uc003cru.2	+	6	707	c.281C>T	c.(280-282)CCC>CTC	p.P94L	DHX30_uc003crs.2_Missense_Mutation_p.P55L|DHX30_uc003crt.2_Missense_Mutation_p.P55L|DHX30_uc010hjr.1_Missense_Mutation_p.P122L	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	94	DRBM.					mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		ATAAAATGGCCCAAGAGCGTG	0.498													4	54					0	0	3.59834e-05	0	0
MAP4	4134	broad.mit.edu	37	3	48040154	48040154	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:48040154G>T	uc003csb.2	-	2	723	c.197C>A	c.(196-198)CCG>CAG	p.P66Q	MAP4_uc003csc.3_Missense_Mutation_p.P66Q|MAP4_uc011bbf.1_Missense_Mutation_p.P66Q|MAP4_uc003csf.3_Missense_Mutation_p.P66Q|MAP4_uc003csg.2_Missense_Mutation_p.P66Q	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	66					negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TTCTGAGCACGGTTTCTTCTT	0.403													5	162					0.000157383	0.00173811	0.000157383	1	0
COL7A1	1294	broad.mit.edu	37	3	48614335	48614335	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:48614335T>C	uc003ctz.2	-	66	5587	c.5586A>G	c.(5584-5586)TCA>TCG	p.S1862S		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1862	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity	p.S1862S(1)		ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CAGAGGCGCCTGAATCTCCTT	0.542													4	114					0	0	0.00024832	0	0
CELSR3	1951	broad.mit.edu	37	3	48684205	48684205	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:48684205C>A	uc003cul.2	-	21	7567	c.7286G>T	c.(7285-7287)CGA>CTA	p.R2429L	CELSR3_uc003cuf.1_Missense_Mutation_p.R2499L|CELSR3_uc010hkf.2_5'Flank|CELSR3_uc010hkg.2_Missense_Mutation_p.R412L	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	2429	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CCTGGCACCTCGGCGTTCTGC	0.597													4	46					0.000157383	0.00173811	0.000157383	1	0
CELSR3	1951	broad.mit.edu	37	3	48697581	48697581	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:48697581C>G	uc003cul.2	-	1	2768	c.2487G>C	c.(2485-2487)CTG>CTC	p.L829L	CELSR3_uc003cuf.1_Silent_p.L899L	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	829	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CAGTTAGTACCAGCTTGAAGT	0.547													4	118					0	0	0.000602214	0	0
LOC646498	646498	broad.mit.edu	37	3	49227397	49227397	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:49227397G>C	uc011bcj.1	-	1	31	c.25C>G	c.(25-27)CCA>GCA	p.P9A		NM_001080528	NP_001073997			hypothetical LOC646498												0				BRCA - Breast invasive adenocarcinoma(193;8.04e-05)|Kidney(197;0.00221)|KIRC - Kidney renal clear cell carcinoma(197;0.00247)		GATGCTTTTGGGTTCTGGGAG	0.552													4	170					0	0	0.000157383	0	0
USP4	7375	broad.mit.edu	37	3	49315767	49315767	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:49315767C>G	uc003cwq.2	-	22	2930	c.2851G>C	c.(2851-2853)GGC>CGC	p.G951R	C3orf62_uc003cwn.2_5'Flank|USP4_uc003cwo.2_3'UTR|USP4_uc003cwp.2_Missense_Mutation_p.G681R|USP4_uc003cwr.2_Missense_Mutation_p.G904R	NM_003363	NP_003354	Q13107	UBP4_HUMAN	ubiquitin specific protease 4 isoform a	951					negative regulation of protein ubiquitination|protein deubiquitination|protein localization at cell surface|regulation of protein stability|ubiquitin-dependent protein catabolic process	lysosome|nucleus	adenosine receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|urinary_tract(1)|lung(1)	4		Ovarian(412;0.00308)|Myeloproliferative disorder(1037;0.0255)|Hepatocellular(537;0.121)		OV - Ovarian serous cystadenocarcinoma(275;4.74e-26)|Kidney(197;2.22e-07)|KIRC - Kidney renal clear cell carcinoma(197;5.14e-06)|BRCA - Breast invasive adenocarcinoma(193;9.46e-05)		TCCCCAAAGCCCTGCTGAGAG	0.507													5	108					0	0	0.000602214	0	0
USP4	7375	broad.mit.edu	37	3	49348974	49348974	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:49348974C>G	uc003cwq.2	-	7	888	c.809G>C	c.(808-810)GGG>GCG	p.G270A	USP4_uc003cwo.2_5'UTR|USP4_uc003cwp.2_5'UTR|USP4_uc003cwr.2_Intron	NM_003363	NP_003354	Q13107	UBP4_HUMAN	ubiquitin specific protease 4 isoform a	270					negative regulation of protein ubiquitination|protein deubiquitination|protein localization at cell surface|regulation of protein stability|ubiquitin-dependent protein catabolic process	lysosome|nucleus	adenosine receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|urinary_tract(1)|lung(1)	4		Ovarian(412;0.00308)|Myeloproliferative disorder(1037;0.0255)|Hepatocellular(537;0.121)		OV - Ovarian serous cystadenocarcinoma(275;4.74e-26)|Kidney(197;2.22e-07)|KIRC - Kidney renal clear cell carcinoma(197;5.14e-06)|BRCA - Breast invasive adenocarcinoma(193;9.46e-05)		ACTGTGCATCCCACAGGTGCT	0.502													4	64					0	0	0.00024832	0	0
RNF123	63891	broad.mit.edu	37	3	49758307	49758307	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:49758307C>G	uc003cxh.2	+	37	3804	c.3718C>G	c.(3718-3720)CAG>GAG	p.Q1240E	RNF123_uc003cxi.2_RNA|AMIGO3_uc003cxj.2_5'Flank	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	1240	Poly-Ala.					cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		TGCATCTGCCCAGGCAGCAGC	0.562													4	125					0	0	0.00024832	0	0
DOCK3	1795	broad.mit.edu	37	3	51370631	51370631	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:51370631C>A	uc011bds.1	+	35	3581	c.3558C>A	c.(3556-3558)GGC>GGA	p.G1186G		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1186	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GCGAGACCGGCATTTCCTTTG	0.527													5	122					0.000157383	0.00173811	0.000157383	1	0
DOCK3	1795	broad.mit.edu	37	3	51370665	51370665	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:51370665G>A	uc011bds.1	+	35	3615	c.3592G>A	c.(3592-3594)GAA>AAA	p.E1198K		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1198	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CCGCCTCATGGAACGTCTTCT	0.542													7	101					0	0	0.000442599	0	0
PARP3	10039	broad.mit.edu	37	3	51982488	51982488	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:51982488C>G	uc003dby.2	+	11	1965	c.1594C>G	c.(1594-1596)CAC>GAC	p.H532D	PARP3_uc003dbz.2_Missense_Mutation_p.H539D	NM_005485	NP_005476	Q9Y6F1	PARP3_HUMAN	poly (ADP-ribose) polymerase family, member 3	532	PARP catalytic.				DNA repair|protein ADP-ribosylation	centriole|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		GCTGGAGGTCCACCTCTGAGT	0.592													4	52					0	0	3.59834e-05	0	0
BAP1	8314	broad.mit.edu	37	3	52438469	52438469	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:52438469C>A	uc003ddx.2	-	12	1365	c.1250G>T	c.(1249-1251)AGG>ATG	p.R417M	BAP1_uc003ddw.2_5'Flank|BAP1_uc010hmg.2_5'Flank|BAP1_uc010hmh.2_RNA	NM_004656	NP_004647	Q92560	BAP1_HUMAN	BRCA1 associated protein-1	417					monoubiquitinated histone H2A deubiquitination|negative regulation of cell proliferation|protein K48-linked deubiquitination|regulation of cell cycle|regulation of cell growth|ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|PR-DUB complex	chromatin binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			pleura(32)|eye(28)|lung(2)|ovary(2)|breast(1)	65				BRCA - Breast invasive adenocarcinoma(193;1.72e-05)|Kidney(197;0.0018)|KIRC - Kidney renal clear cell carcinoma(197;0.00203)|OV - Ovarian serous cystadenocarcinoma(275;0.0277)		CTGGGCTGACCTAAGGGCAGA	0.433			N|Mis|F|S|O		uveal melanoma|breast|NSCLC								5	45					1.23904e-05	0.000151632	0.000602214	1	0
ITIH1	3697	broad.mit.edu	37	3	52816188	52816188	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:52816188C>G	uc003dfs.2	+	8	859	c.835C>G	c.(835-837)CAC>GAC	p.H279D	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_5'Flank|ITIH1_uc010hmo.1_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	279					hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		CCACTTTGCCCACTTCTTTGC	0.522													4	114					0	0	3.59834e-05	0	0
ITIH1	3697	broad.mit.edu	37	3	52819189	52819189	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:52819189G>C	uc003dfs.2	+	12	1561	c.1537G>C	c.(1537-1539)GGG>CGG	p.G513R	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_Missense_Mutation_p.G114R|ITIH1_uc010hmo.1_Missense_Mutation_p.G67R|ITIH1_uc003dfu.2_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	513	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		TGTGGTGGCCGGGCGCATTGC	0.577													5	98					0	0	8.12818e-05	0	0
TKT	7086	broad.mit.edu	37	3	53260771	53260771	+	Splice_Site	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:53260771C>T	uc003dgo.2	-	13	1806	c.1696_splice	c.e13+1	p.G566_splice	TKT_uc003dgp.2_Splice_Site_p.G198_splice|TKT_uc011beo.1_Splice_Site_p.G519_splice|TKT_uc003dgq.2_Splice_Site_p.G566_splice|TKT_uc011beq.1_Splice_Site_p.G574_splice|TKT_uc011ber.1_Splice_Site_p.G368_splice|TKT_uc011bep.1_Splice_Site_p.G483_splice	NM_001135055	NP_001128527	P29401	TKT_HUMAN	transketolase isoform 1						energy reserve metabolic process|xylulose biosynthetic process	cytosol	protein binding|transketolase activity			ovary(2)	2		Prostate(884;0.0959)		BRCA - Breast invasive adenocarcinoma(193;0.000159)|OV - Ovarian serous cystadenocarcinoma(275;0.000314)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)	Thiamine(DB00152)	GGCCTCCTTACCTTCATAATA	0.612													4	52					0	0	3.59834e-05	0	0
CACNA1D	776	broad.mit.edu	37	3	53760925	53760925	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:53760925G>A	uc003dgv.3	+	15	2283	c.2120G>A	c.(2119-2121)TGG>TAG	p.W707*	CACNA1D_uc003dgu.3_Nonsense_Mutation_p.W727*|CACNA1D_uc003dgy.3_Nonsense_Mutation_p.W707*|CACNA1D_uc003dgw.3_Nonsense_Mutation_p.W374*	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	707	Extracellular (Potential).|II.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GGCGAAGACTGGAATGCTGTG	0.517													18	140					0	0	0.000229342	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54604103	54604103	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:54604103G>T	uc003dhf.2	+	8	908	c.860G>T	c.(859-861)GGG>GTG	p.G287V	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.G193V|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.G21V	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	287	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		GATACACTTGGGGATGATGAC	0.443													9	140					0.000673444	0.00655963	0.000673444	1	0
ARF4	378	broad.mit.edu	37	3	57570189	57570189	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:57570189C>A	uc003dix.3	-	2	418	c.70G>T	c.(70-72)GGA>TGA	p.G24*	ARF4_uc003diy.3_RNA|ARF4_uc010hnd.2_Intron|ARF4_uc003diz.3_Intron	NM_001660	NP_001651	P18085	ARF4_HUMAN	ADP-ribosylation factor 4	24	GTP.				protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	Golgi apparatus	GTP binding|GTPase activity			upper_aerodigestive_tract(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0449)|Kidney(284;0.0561)		GCATCCAATCCAACTAGAAGA	0.348													9	223					6.40141e-05	0.00075092	0.000978159	1	0
FLNB	2317	broad.mit.edu	37	3	58095769	58095769	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:58095769C>A	uc003djj.2	+	16	2521	c.2356C>A	c.(2356-2358)CGG>AGG	p.R786R	FLNB_uc010hne.2_Silent_p.R786R|FLNB_uc003djk.2_Silent_p.R786R|FLNB_uc010hnf.2_Silent_p.R786R|FLNB_uc003djl.2_Silent_p.R617R|FLNB_uc003djm.2_Silent_p.R617R	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	786	Filamin 6.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GTGTGATGCCCGGGTGTTAAG	0.458													9	236					0.000274275	0.00290969	0.000274275	1	0
ABHD6	57406	broad.mit.edu	37	3	58279391	58279391	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:58279391G>C	uc003djs.3	+	9	1323	c.913G>C	c.(913-915)GGG>CGG	p.G305R	ABHD6_uc003djr.2_Missense_Mutation_p.G306R|ABHD6_uc003djt.3_Missense_Mutation_p.G305R	NM_020676	NP_065727	Q9BV23	ABHD6_HUMAN	abhydrolase domain containing 6	305	Cytoplasmic (Potential).					integral to membrane	acylglycerol lipase activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(55;0.000225)|KIRC - Kidney renal clear cell carcinoma(284;0.0471)|Kidney(284;0.0589)|OV - Ovarian serous cystadenocarcinoma(275;0.209)		GGAAAACTGTGGGCACTCAGT	0.512													4	71					0	0	0.00024832	0	0
PTPRG	5793	broad.mit.edu	37	3	62253098	62253098	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:62253098G>C	uc003dlb.2	+	18	3389	c.2670G>C	c.(2668-2670)AGG>AGC	p.R890S	PTPRG_uc003dlc.2_Missense_Mutation_p.R861S|PTPRG_uc011bfi.1_Missense_Mutation_p.R136S|uc010hno.2_Intron|uc003dld.3_Intron|uc010hnp.2_Intron|uc003dle.3_Intron	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	890	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		ATCACAGTAGGGTGAAGTTAA	0.338													5	187					0	0	0.000157383	0	0
CADPS	8618	broad.mit.edu	37	3	62463952	62463952	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:62463952C>T	uc003dll.2	-	23	3673	c.3313G>A	c.(3313-3315)GAA>AAA	p.E1105K	CADPS_uc003dlj.1_Missense_Mutation_p.E55K|CADPS_uc003dlk.1_Missense_Mutation_p.E553K|CADPS_uc003dlm.2_Missense_Mutation_p.E1066K|CADPS_uc003dln.2_Missense_Mutation_p.E1026K	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	1105	MHD1.|Interaction with DRD2.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		ACACAAGATTCGATCATGTCA	0.507													23	87					0	0	0.000184323	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64532512	64532512	+	Silent	SNP	C	G	G	rs149929350	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:64532512C>G	uc003dmg.2	-	32	5018	c.4986G>C	c.(4984-4986)ACG>ACC	p.T1662T	ADAMTS9_uc011bfo.1_Silent_p.T1634T|ADAMTS9_uc011bfp.1_Silent_p.T573T	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1662	TSP type-1 14.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TGGGGGGCTGCGTGCCTGGGC	0.547													4	318					0	0	8.12818e-05	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64640121	64640121	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:64640121C>A	uc003dmg.2	-	8	1256	c.1224G>T	c.(1222-1224)CTG>CTT	p.L408L	ADAMTS9_uc011bfo.1_Silent_p.L380L|ADAMTS9_uc003dmh.1_Silent_p.L237L|ADAMTS9_uc003dmk.1_Silent_p.L408L	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	408	Peptidase M12B.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		AAATGGTTCCCAGTTCAGCCA	0.408													9	262					0.000274275	0.00290969	0.000274275	1	0
ADAMTS9	56999	broad.mit.edu	37	3	64640287	64640287	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:64640287G>C	uc003dmg.2	-	7	1203	c.1171C>G	c.(1171-1173)CAG>GAG	p.Q391E	ADAMTS9_uc011bfo.1_Missense_Mutation_p.Q363E|ADAMTS9_uc003dmh.1_Missense_Mutation_p.Q220E|ADAMTS9_uc003dmk.1_Missense_Mutation_p.Q391E	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	391	Peptidase M12B.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		CAGATATCCTGTCTGAAAGCA	0.393													4	360					0	0	3.59834e-05	0	0
MAGI1	9223	broad.mit.edu	37	3	65342575	65342575	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:65342575G>C	uc003dmn.2	-	23	4393	c.3867C>G	c.(3865-3867)CCC>CCG	p.P1289P	MAGI1_uc003dmm.2_3'UTR	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	1318					cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		CCCCGCTGTCGGGTTTCCTCG	0.667													3	69					0	0	0.00024832	0	0
KBTBD8	84541	broad.mit.edu	37	3	67053653	67053653	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:67053653C>A	uc003dmy.2	+	3	315	c.262C>A	c.(262-264)CAA>AAA	p.Q88K	KBTBD8_uc011bfv.1_Intron	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	88	BTB.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		AGAAAGTACTCAAAAAGAAGT	0.368													8	164					0.000157383	0.00173811	0.000157383	1	0
MITF	4286	broad.mit.edu	37	3	70014048	70014048	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:70014048G>C	uc003dnz.2	+	10	1328	c.1212G>C	c.(1210-1212)ACG>ACC	p.T404T	MITF_uc011bgb.1_Silent_p.T352T|MITF_uc003doa.2_Silent_p.T403T|MITF_uc003dob.2_Silent_p.T388T|MITF_uc003dod.2_Silent_p.T379T|MITF_uc003doe.2_Silent_p.T297T|MITF_uc003dof.2_Silent_p.T303T	NM_198159	NP_937802	O75030	MITF_HUMAN	microphthalmia-associated transcription factor	410	DNA binding regulation.				melanocyte differentiation|multicellular organismal development|protein complex assembly	nucleus|protein complex	DNA binding|protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			ovary(2)	2		Lung NSC(201;0.0384)|Prostate(884;0.0526)		BRCA - Breast invasive adenocarcinoma(55;3.07e-05)|Epithelial(33;0.000138)|LUSC - Lung squamous cell carcinoma(21;0.008)|Lung(16;0.0107)|KIRC - Kidney renal clear cell carcinoma(39;0.204)|Kidney(39;0.239)		TTCCATCCACGGGTCTCTGCT	0.408			A		melanoma 		Waardenburg syndrome type 2|Tietz syndrome						4	107					0	0	0.00024832	0	0
FLJ10213	55096	broad.mit.edu	37	3	73112008	73112008	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:73112008G>T	uc003dpj.2	+	1	1199	c.776G>T	c.(775-777)GGA>GTA	p.G259V	PPP4R2_uc003dph.1_Intron|PPP4R2_uc003dpi.1_Intron	NM_018029	NP_060499	Q6P2I7	EBLN2_HUMAN	hypothetical protein LOC55096	259							protein binding				0		Prostate(10;0.0187)|Lung SC(41;0.236)		Epithelial(33;3.9e-05)|BRCA - Breast invasive adenocarcinoma(55;7.72e-05)|LUSC - Lung squamous cell carcinoma(21;0.00156)|Lung(16;0.00487)|KIRC - Kidney renal clear cell carcinoma(39;0.012)|Kidney(39;0.0139)		CTTCTATTTGGAGACTTTGAA	0.428													8	212					0.000442599	0.00445669	0.000442599	1	0
ROBO2	6092	broad.mit.edu	37	3	77693936	77693936	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:77693936G>A	uc003dpy.3	+	25	4659	c.4016G>A	c.(4015-4017)GGA>GAA	p.G1339E	ROBO2_uc003dpz.2_Missense_Mutation_p.G1404E|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.G1343E	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1339	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding	p.G1339*(1)		lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		TCTTCTAAGGGATCCACTGGA	0.517													6	63					0	0	3.59834e-05	0	0
ROBO1	6091	broad.mit.edu	37	3	78655978	78655978	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:78655978G>C	uc003dqe.2	-	29	4857	c.4649C>G	c.(4648-4650)CCC>CGC	p.P1550R	ROBO1_uc003dqb.2_Missense_Mutation_p.P1511R|ROBO1_uc003dqc.2_Missense_Mutation_p.P1450R|ROBO1_uc003dqd.2_Missense_Mutation_p.P1505R|ROBO1_uc010hoh.2_Missense_Mutation_p.P742R|ROBO1_uc011bgl.1_Missense_Mutation_p.P1122R	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	1550	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		TGCTTCTCTGGGATCACCTGG	0.473													7	245					0	0	0.000274275	0	0
ZNF654	55279	broad.mit.edu	37	3	88189138	88189138	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:88189138C>G	uc003dqv.2	+	1	877	c.678C>G	c.(676-678)ACC>ACG	p.T226T	CGGBP1_uc003dqu.2_Intron	NM_018293	NP_060763	Q8IZM8	ZN654_HUMAN	zinc finger protein 654	226					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(201;0.0283)		UCEC - Uterine corpus endometrioid carcinoma (27;0.194)|LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00661)		TACATCCAACCGATTTAAATG	0.358													4	54					0	0	3.59834e-05	0	0
EPHA3	2042	broad.mit.edu	37	3	89259507	89259507	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:89259507C>G	uc003dqy.2	+	3	876	c.651C>G	c.(649-651)CCC>CCG	p.P217P	EPHA3_uc003dqx.1_Silent_p.P217P|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	217	Extracellular (Potential).|Cys-rich.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		ACACGGTACCCATGGACTCCC	0.478										TSP Lung(6;0.00050)			4	84					0	0	3.59834e-05	0	0
PROS1	5627	broad.mit.edu	37	3	93593220	93593220	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:93593220C>T	uc003drb.3	-	15	2241	c.1900G>A	c.(1900-1902)GCC>ACC	p.A634T	PROS1_uc010hoo.2_Missense_Mutation_p.A503T|PROS1_uc003dqz.3_Missense_Mutation_p.A503T	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	634	Laminin G-like 2.				leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	TTATAAAAGGCATTCACTGGT	0.363													8	54					0	0	0.000219431	0	0
EPHA6	285220	broad.mit.edu	37	3	96945242	96945242	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:96945242C>G	uc010how.1	+	4	1292	c.1249C>G	c.(1249-1251)CCA>GCA	p.P417A	EPHA6_uc003drp.1_Missense_Mutation_p.P417A	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	322	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TGAAAAAGACCCACCTTCTAT	0.353													4	187					0	0	3.59834e-05	0	0
EPHA6	285220	broad.mit.edu	37	3	97202777	97202777	+	Splice_Site	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:97202777G>C	uc010how.1	+	10	2118	c.2075_splice	c.e10-1	p.L692_splice	EPHA6_uc011bgo.1_Splice_Site|EPHA6_uc011bgp.1_Splice_Site_p.L58_splice|EPHA6_uc003drs.3_Splice_Site_p.L84_splice|EPHA6_uc003drr.3_Splice_Site_p.L84_splice|EPHA6_uc003drt.2_Splice_Site_p.L84_splice|EPHA6_uc010hox.1_Splice_Site	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a							integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TGTTGTTGCAGTGCGCTTCCC	0.378													3	80					0	0	3.59834e-05	0	0
CRYBG3	131544	broad.mit.edu	37	3	97598911	97598911	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:97598911C>A	uc003drx.2	+	3	1191	c.1127C>A	c.(1126-1128)CCA>CAA	p.P376Q		NM_153605	NP_705833			beta-gamma crystallin domain containing 3												0						TGGTCTTTTCCAAATGGAGTT	0.313													7	144					0.000673444	0.00655963	0.000673444	1	0
OR5K3	403277	broad.mit.edu	37	3	98110199	98110199	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:98110199G>C	uc011bgw.1	+	1	690	c.690G>C	c.(688-690)GAG>GAC	p.E230D		NM_001005516	NP_001005516	A6NET4	OR5K3_HUMAN	olfactory receptor, family 5, subfamily K,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AATCCAAGGAGGGAAGAGGCA	0.363													4	123					0	0	3.59834e-05	0	0
OR5K1	26339	broad.mit.edu	37	3	98188534	98188534	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:98188534C>T	uc003dsm.2	+	1	114	c.114C>T	c.(112-114)ACC>ACT	p.T38T		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						ATCTGATCACCGTGGTGGGGA	0.433													4	52					0	0	0.00024832	0	0
TMEM45A	55076	broad.mit.edu	37	3	100277322	100277322	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:100277322C>T	uc003dtz.1	+	4	790	c.477C>T	c.(475-477)GTC>GTT	p.V159V	TMEM45A_uc003dua.1_Silent_p.V175V	NM_018004	NP_060474	Q9NWC5	TM45A_HUMAN	transmembrane protein 45A	159	Helical; (Potential).					integral to membrane				skin(2)|ovary(1)	3						TGGTTTTGGTCGTCTTTCTGA	0.483													19	91					0	0	0.000132079	0	0
TMEM45A	55076	broad.mit.edu	37	3	100295802	100295802	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:100295802C>A	uc003dtz.1	+	6	1081	c.768C>A	c.(766-768)TCC>TCA	p.S256S	TMEM45A_uc003dua.1_Silent_p.S272S|TMEM45A_uc003dub.1_RNA	NM_018004	NP_060474	Q9NWC5	TM45A_HUMAN	transmembrane protein 45A	256						integral to membrane				skin(2)|ovary(1)	3						GGCTCTGCTCCTCAGAAGTTG	0.378													8	133					0.000978159	0.00917326	0.000978159	1	0
ABI3BP	25890	broad.mit.edu	37	3	100570746	100570746	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:100570746C>A	uc003dun.2	-	13	1283	c.1198G>T	c.(1198-1200)GAG>TAG	p.E400*	ABI3BP_uc003duo.2_Nonsense_Mutation_p.E442*	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	400						extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						ATCTCAGGCTCATCTGATGTT	0.348													7	30					1.6384e-10	2.1833e-09	8.12818e-05	1	0
SENP7	57337	broad.mit.edu	37	3	101066888	101066888	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:101066888C>G	uc003dut.2	-	13	1776	c.1665G>C	c.(1663-1665)CTG>CTC	p.L555L	SENP7_uc003duu.2_Silent_p.L490L|SENP7_uc003duv.2_Silent_p.L522L|SENP7_uc003duw.2_Silent_p.L489L|SENP7_uc003dux.2_Silent_p.L391L	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	555					proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						AAATCTCATTCAGGGACACTG	0.303													4	198					0	0	0.00024832	0	0
ZPLD1	131368	broad.mit.edu	37	3	102196387	102196387	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:102196387C>T	uc003dvs.1	+	18	2055	c.1173C>T	c.(1171-1173)TGC>TGT	p.C391C	ZPLD1_uc003dvt.1_Silent_p.C407C|ZPLD1_uc011bhg.1_Silent_p.C391C	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	391	Helical; (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						TTCTTCTGTGCTCACTGGCCC	0.488													5	108					0	0	0.000602214	0	0
CBLB	868	broad.mit.edu	37	3	105412384	105412384	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:105412384G>A	uc003dwc.2	-	13	2330	c.2008C>T	c.(2008-2010)CGG>TGG	p.R670W	CBLB_uc011bhi.1_Missense_Mutation_p.R692W|CBLB_uc003dwd.1_Missense_Mutation_p.R670W|CBLB_uc003dwe.1_Missense_Mutation_p.R670W	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	670	Pro-rich.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						GGAGAAAGCCGGGGAGGAACA	0.413			Mis S		AML								4	48					0	0	3.59834e-05	0	0
MYH15	22989	broad.mit.edu	37	3	108212025	108212025	+	Splice_Site	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:108212025C>G	uc003dxa.1	-	9	829	c.772_splice	c.e9-1	p.G258_splice		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15							myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TGAATTTGCCCTAGTGTGGAC	0.408													3	54					0	0	3.59834e-05	0	0
PHLDB2	90102	broad.mit.edu	37	3	111681011	111681011	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:111681011C>G	uc010hqa.2	+	13	3340	c.2929C>G	c.(2929-2931)CGC>GGC	p.R977G	PHLDB2_uc003dyc.2_Missense_Mutation_p.R961G|PHLDB2_uc003dyd.2_Missense_Mutation_p.R934G|PHLDB2_uc003dyg.2_Missense_Mutation_p.R977G|PHLDB2_uc003dyh.2_Missense_Mutation_p.R934G|PHLDB2_uc003dyi.2_Missense_Mutation_p.R468G|PHLDB2_uc003dyj.2_Missense_Mutation_p.R32G	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	977						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						ATTTTATAACCGCACAGCATC	0.403													4	100					0	0	0.00024832	0	0
SLC9A10	285335	broad.mit.edu	37	3	111927115	111927116	+	Missense_Mutation	DNP	CC	GA	GA	rs77616628		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:111927115_111927116CC>GA	uc003dyu.2	-	16	2117_2118	c.1895_1896GG>TC	c.(1894-1896)TGG>TTC	p.W632F	SLC9A10_uc011bhu.1_Intron|SLC9A10_uc010hqc.2_Missense_Mutation_p.W584F	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	632	Helical; (Potential).|Ion transport-like.				cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						ACTGGGATATCCAAGAGATTAT	0.297													4	178					0	0	6.4e-05	0	0
ATG3	64422	broad.mit.edu	37	3	112277231	112277232	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:112277231_112277232GG>CT	uc003dzd.2	-	2	215_216	c.105_106CC>AG	c.(103-108)ACCCCA>ACAGCA	p.P36A	ATG3_uc003dzc.2_Missense_Mutation_p.P36A|ATG3_uc010hqe.2_Missense_Mutation_p.P36A	NM_022488	NP_071933	Q9NT62	ATG3_HUMAN	Apg3p	36					autophagic vacuole assembly|mitochondrial fragmentation involved in apoptosis|protein targeting to membrane|protein ubiquitination	cytoplasmic ubiquitin ligase complex|cytosol	Atg12 ligase activity|Atg8 ligase activity|enzyme binding			ovary(3)	3						ACCTCTTCTGGGGTAATTACAC	0.302													6	290					0	0	6.4e-05	0	0
SLC35A5	55032	broad.mit.edu	37	3	112299693	112299693	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:112299693T>C	uc003dze.2	+	6	974	c.729T>C	c.(727-729)TCT>TCC	p.S243S		NM_017945	NP_060415	Q9BS91	S35A5_HUMAN	solute carrier family 35, member A5	243	Helical; (Potential).					Golgi membrane|integral to membrane	nucleotide-sugar transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1						GTTTTATTTCTTCAATGGCTA	0.398													3	91					0	0	6.4e-05	0	0
SIDT1	54847	broad.mit.edu	37	3	113342325	113342325	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:113342325G>C	uc003eak.2	+	22	2793	c.2142G>C	c.(2140-2142)CTG>CTC	p.L714L	SIDT1_uc011big.1_Silent_p.L467L|SIDT1_uc011bii.1_Silent_p.L167L	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	714	Helical; (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						CCTACATGCTGGGCATCTTCA	0.562													5	160					0	0	0.000442599	0	0
ZBTB20	26137	broad.mit.edu	37	3	114069374	114069374	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:114069374C>G	uc003ebi.2	-	4	1731	c.1551G>C	c.(1549-1551)GCG>GCC	p.A517A	ZBTB20_uc003ebj.2_Silent_p.A444A|ZBTB20_uc010hqp.2_Silent_p.A444A|ZBTB20_uc003ebk.2_Silent_p.A444A|ZBTB20_uc003ebl.2_Silent_p.A444A|ZBTB20_uc003ebm.2_Silent_p.A444A|ZBTB20_uc003ebn.2_Silent_p.A444A|uc003ebo.1_5'Flank	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	517				A -> V (in Ref. 1; AAG28340).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		GGCCACTGCCCGCGGGCTGGG	0.622													4	104					0	0	0.00024832	0	0
ARHGAP31	57514	broad.mit.edu	37	3	119120905	119120905	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:119120905C>T	uc003ecj.3	+	10	1838	c.1306C>T	c.(1306-1308)CGG>TGG	p.R436W		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	436					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						GAAGGTTTTCCGGCCTGTTGA	0.597													5	79					0	0	8.12818e-05	0	0
FBXO40	51725	broad.mit.edu	37	3	121341728	121341728	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:121341728G>C	uc003eeg.2	+	3	1662	c.1452G>C	c.(1450-1452)AGG>AGC	p.R484S		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	484					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		AATTCTTCAGGAGGGATGAGT	0.537													4	70					0	0	0.00024832	0	0
SLC15A2	6565	broad.mit.edu	37	3	121615297	121615297	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:121615297G>C	uc003eep.2	+	2	303	c.150G>C	c.(148-150)GTG>GTC	p.V50V	SLC15A2_uc011bjn.1_Silent_p.V50V	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	50					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	CCTTCATTGTGGTGAATGAAT	0.438													7	137					0	0	0.000274275	0	0
ILDR1	286676	broad.mit.edu	37	3	121720599	121720599	+	Missense_Mutation	SNP	G	C	C	rs12630594		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:121720599G>C	uc003ees.2	-	4	598	c.492C>G	c.(490-492)ATC>ATG	p.I164M	ILDR1_uc003eeq.2_Missense_Mutation_p.I176M|ILDR1_uc003eer.2_Missense_Mutation_p.I164M|ILDR1_uc010hrg.2_Intron	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	164	Extracellular (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		TACGTAGGACGATGAGCTTTA	0.443													4	156					0	0	0.00024832	0	0
ILDR1	286676	broad.mit.edu	37	3	121725861	121725861	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:121725861G>C	uc003ees.2	-	2	312	c.206C>G	c.(205-207)CCT>CGT	p.P69R	ILDR1_uc003eeq.2_Missense_Mutation_p.P81R|ILDR1_uc003eer.2_Missense_Mutation_p.P69R|ILDR1_uc010hrg.2_Missense_Mutation_p.P69R	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	69	Extracellular (Potential).|Ig-like V-type.					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		GTCAAAGATAGGGTCCTTGCA	0.537													3	22					0	0	6.4e-05	0	0
KPNA1	3836	broad.mit.edu	37	3	122152632	122152632	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:122152632C>A	uc003efd.1	-	12	1162	c.1126G>T	c.(1126-1128)GTG>TTG	p.V376L	KPNA1_uc003efb.1_Missense_Mutation_p.V175L|KPNA1_uc003efc.1_Missense_Mutation_p.V175L|KPNA1_uc011bjr.1_Missense_Mutation_p.V175L|KPNA1_uc010hrh.2_Missense_Mutation_p.V175L|KPNA1_uc003efe.2_Missense_Mutation_p.V376L	NM_002264	NP_002255	P52294	IMA1_HUMAN	karyopherin alpha 1	376	ARM 8.|Binding to RAG1.|NLS binding site (minor) (By similarity).				DNA fragmentation involved in apoptotic nuclear change|NLS-bearing substrate import into nucleus|regulation of DNA recombination|viral genome transport in host cell|viral infectious cycle	cytosol|nuclear pore|nucleoplasm	nuclear localization sequence binding|protein binding|protein transporter activity				0				GBM - Glioblastoma multiforme(114;0.0898)		GCATCTATCACAGTCTAAAAT	0.308													5	126					0.000442599	0.00445669	0.000442599	1	0
DIRC2	84925	broad.mit.edu	37	3	122591290	122591290	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:122591290G>C	uc003efw.3	+	8	1306	c.1167G>C	c.(1165-1167)CTG>CTC	p.L389L	DIRC2_uc010hrl.2_RNA|DIRC2_uc010hrm.2_Silent_p.L227L	NM_032839	NP_116228	Q96SL1	DIRC2_HUMAN	disrupted in renal carcinoma 2	389	Helical; (Potential).				transport	integral to membrane					0				GBM - Glioblastoma multiforme(114;0.0614)		GTATTCTCCTGGGAGTGTTCT	0.398													5	214					0	0	0.000274275	0	0
KALRN	8997	broad.mit.edu	37	3	124132403	124132403	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:124132403G>C	uc003ehg.2	+	14	2554	c.2427G>C	c.(2425-2427)CAG>CAC	p.Q809H	KALRN_uc010hrv.1_Missense_Mutation_p.Q809H|KALRN_uc003ehf.1_Missense_Mutation_p.Q809H|KALRN_uc011bjy.1_Missense_Mutation_p.Q809H|KALRN_uc003ehh.1_Missense_Mutation_p.Q155H	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	809					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TGGCAGAACAGCGGCTGCAGC	0.542													4	55					0	0	0.00024832	0	0
KALRN	8997	broad.mit.edu	37	3	124374466	124374466	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:124374466G>C	uc003ehg.2	+	39	5938	c.5811G>C	c.(5809-5811)CTG>CTC	p.L1937L	KALRN_uc003ehi.2_Silent_p.L278L|KALRN_uc003ehk.2_Silent_p.L240L|KALRN_uc011bjz.1_Silent_p.L29L	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1936	DH 2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TGAATGAGCTGGTACAGACAG	0.458													4	166					0	0	0.000157383	0	0
KALRN	8997	broad.mit.edu	37	3	124415024	124415024	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:124415024C>A	uc003ehg.2	+	54	7748	c.7621C>A	c.(7621-7623)CAA>AAA	p.Q2541K	KALRN_uc003ehk.2_Missense_Mutation_p.Q844K	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2540	Ig-like C2-type.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TCTGATGCCCCAAGACAGTGG	0.463													8	113					1.12685e-05	0.000138146	0.000274275	1	0
MUC13	56667	broad.mit.edu	37	3	124630955	124630955	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:124630955C>T	uc003ehq.1	-	9	1269	c.1245G>A	c.(1243-1245)AAG>AAA	p.K415K		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	415	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						ACTCACTGTCCTTACAGTCGA	0.428													5	44					0	0	0.000274275	0	0
EEFSEC	60678	broad.mit.edu	37	3	128126924	128126924	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:128126924C>A	uc003eki.2	+	7	1651	c.1613C>A	c.(1612-1614)CCC>CAC	p.P538H	EEFSEC_uc003ekj.2_Missense_Mutation_p.P431T	NM_021937	NP_068756	P57772	SELB_HUMAN	eukaryotic elongation factor,	538						cytoplasm|nucleus	GTP binding|GTPase activity|translation elongation factor activity			ovary(1)	1						GGCCTCAGCCCCGAGTCCAAG	0.697													4	19					0.000602214	0.00604416	0.000602214	1	0
ACAD9	28976	broad.mit.edu	37	3	128629649	128629649	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:128629649G>C	uc003ela.3	+	17	1960	c.1758G>C	c.(1756-1758)CTG>CTC	p.L586L	KIAA1257_uc003elg.1_Intron|ACAD9_uc011bks.1_Silent_p.L463L|ACAD9_uc003elb.2_Silent_p.L463L|ACAD9_uc003eld.1_RNA|ACAD9_uc003ele.2_Silent_p.L238L|uc003elf.1_Intron	NM_014049	NP_054768	Q9H845	ACAD9_HUMAN	acyl-Coenzyme A dehydrogenase family, member 9	586						mitochondrion	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding			ovary(2)|central_nervous_system(1)	3						TCTCTCAGCTGGACAAGTGTG	0.537													5	204					0	0	3.59834e-05	0	0
COPG	22820	broad.mit.edu	37	3	128976598	128976598	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:128976598G>C	uc003els.2	+	10	866	c.766G>C	c.(766-768)GAG>CAG	p.E256Q	COPG_uc010htb.2_Missense_Mutation_p.E162Q	NM_016128	NP_057212	Q9Y678	COPG_HUMAN	coatomer protein complex, subunit gamma 1	256					COPI coating of Golgi vesicle|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(3)|breast(1)	4						TGACTTCATCGAGAGCTGCTT	0.567													4	233					0	0	0.00024832	0	0
MBD4	8930	broad.mit.edu	37	3	129155946	129155946	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:129155946G>C	uc003emh.1	-	3	717	c.541C>G	c.(541-543)CGA>GGA	p.R181G	MBD4_uc003emi.1_Missense_Mutation_p.R181G|MBD4_uc003emj.1_Missense_Mutation_p.R181G|MBD4_uc003emk.1_Intron|MBD4_uc011bkw.1_Missense_Mutation_p.R181G	NM_003925	NP_003916	O95243	MBD4_HUMAN	methyl-CpG binding domain protein 4	181					depyrimidination	nucleoplasm	DNA N-glycosylase activity|endodeoxyribonuclease activity|protein binding|satellite DNA binding			ovary(1)|lung(1)	2						CACTTGCTTCGGGTCCTGAGG	0.433								BER_DNA_glycosylases					4	187					0	0	0.000157383	0	0
COL6A6	131873	broad.mit.edu	37	3	130289710	130289710	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:130289710C>G	uc010htl.2	+	6	2481	c.2450C>G	c.(2449-2451)TCT>TGT	p.S817C		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	817	VWFA 5.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						ATTGATAGCTCTGGCAGTATT	0.403													5	135					0	0	0.000602214	0	0
ASTE1	28990	broad.mit.edu	37	3	130743198	130743198	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:130743198G>C	uc003env.1	-	3	1395	c.953C>G	c.(952-954)CCA>CGA	p.P318R	NEK11_uc003enx.2_5'Flank|NEK11_uc003eny.2_5'Flank|NEK11_uc003eoa.2_5'Flank|NEK11_uc003enz.2_5'Flank|NEK11_uc010htn.2_5'Flank|NEK11_uc011blk.1_5'Flank|NEK11_uc011bll.1_5'Flank|NEK11_uc003enw.1_5'Flank|NEK11_uc011blm.1_5'Flank|ASTE1_uc010htm.1_Missense_Mutation_p.P318R|ASTE1_uc011blj.1_RNA	NM_014065	NP_054784	Q2TB18	ASTE1_HUMAN	asteroid homolog 1	318				P -> T (in Ref. 4; AAF14876).	DNA repair		nuclease activity				0						CAAGGCATCTGGACAGACATA	0.453													4	72					0	0	0.00024832	0	0
NEK11	79858	broad.mit.edu	37	3	130947505	130947505	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:130947505C>T	uc003eny.2	+	15	1859	c.1533C>T	c.(1531-1533)TCC>TCT	p.S511S	NEK11_uc003eoa.2_Silent_p.S511S|NEK11_uc003enz.2_Silent_p.S329S|NEK11_uc010htn.2_RNA|NEK11_uc011blk.1_Silent_p.S327S|NEK11_uc011bll.1_Silent_p.S406S	NM_024800	NP_079076	Q8NG66	NEK11_HUMAN	NIMA-related kinase 11 isoform 1	511					cell cycle|intra-S DNA damage checkpoint|intracellular protein kinase cascade	nucleolus	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(4)|stomach(1)|central_nervous_system(1)	6						ATGAGGGATCCCAGCCTGCTT	0.448													7	55					0	0	0.000157383	0	0
DNAJC13	23317	broad.mit.edu	37	3	132166282	132166282	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:132166282G>C	uc003eor.2	+	4	327	c.262G>C	c.(262-264)GAG>CAG	p.E88Q	DNAJC13_uc010htq.1_Missense_Mutation_p.E88Q	NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	88							heat shock protein binding			ovary(1)|breast(1)	2						ATTTTCTACAGAGCACAGAAC	0.348													3	65					0	0	6.4e-05	0	0
A4GNT	51146	broad.mit.edu	37	3	137843272	137843272	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:137843272G>C	uc003ers.2	-	3	1059	c.857C>G	c.(856-858)GCC>GGC	p.A286G		NM_016161	NP_057245	Q9UNA3	A4GCT_HUMAN	alpha-1,4-N-acetylglucosaminyltransferase	286	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	acetylglucosaminyltransferase activity|galactosyltransferase activity			central_nervous_system(1)	1						CAAATGCAGGGCATAAGAGAC	0.502													4	307					0	0	0.00024832	0	0
A4GNT	51146	broad.mit.edu	37	3	137843679	137843679	+	Silent	SNP	C	G	G	rs146152770		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:137843679C>G	uc003ers.2	-	3	652	c.450G>C	c.(448-450)TCG>TCC	p.S150S		NM_016161	NP_057245	Q9UNA3	A4GCT_HUMAN	alpha-1,4-N-acetylglucosaminyltransferase	150	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	acetylglucosaminyltransferase activity|galactosyltransferase activity			central_nervous_system(1)	1						GGGATGCATCCGAGCTGATGT	0.567													4	205					0	0	0.000157383	0	0
ARMC8	25852	broad.mit.edu	37	3	137956376	137956376	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:137956376G>C	uc003esa.1	+	10	1063	c.696G>C	c.(694-696)AGG>AGC	p.R232S	ARMC8_uc003erw.2_Missense_Mutation_p.R232S|ARMC8_uc003erx.2_Missense_Mutation_p.R232S|ARMC8_uc003ery.2_Missense_Mutation_p.R204S|ARMC8_uc003erz.2_Missense_Mutation_p.R204S|ARMC8_uc011bmf.1_Missense_Mutation_p.R215S|ARMC8_uc011bmg.1_Missense_Mutation_p.R246S|ARMC8_uc011bmh.1_Missense_Mutation_p.R173S|ARMC8_uc003esb.1_Missense_Mutation_p.R204S|ARMC8_uc003esc.1_Missense_Mutation_p.R4S	NM_015396	NP_056211	Q8IUR7	ARMC8_HUMAN	armadillo repeat containing 8 isoform 2	246	ARM 5.						binding				0						TGTTACAGAGGGATAAGCCTA	0.328													6	427					0	0	0.000157383	0	0
ARMC8	25852	broad.mit.edu	37	3	137982608	137982609	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:137982608_137982609CG>AT	uc003esa.1	+	14	1487_1488	c.1120_1121CG>AT	c.(1120-1122)CGA>ATA	p.R374I	TXNDC6_uc003esd.1_Intron|TXNDC6_uc010huf.1_Intron|TXNDC6_uc003ese.1_Intron|ARMC8_uc011bmf.1_Missense_Mutation_p.R357I|ARMC8_uc011bmg.1_Missense_Mutation_p.R321I|ARMC8_uc011bmh.1_Missense_Mutation_p.R315I|ARMC8_uc003esb.1_Missense_Mutation_p.R346I|ARMC8_uc003esc.1_Missense_Mutation_p.R146I|ARMC8_uc003esf.1_5'UTR	NM_015396	NP_056211	Q8IUR7	ARMC8_HUMAN	armadillo repeat containing 8 isoform 2	388	ARM 8.						binding				0						TATGATGGACCGAATTGTGACT	0.386													18	400					0	0	6.4e-05	0	0
TXNDC6	347736	broad.mit.edu	37	3	138033208	138033208	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:138033208G>C	uc003esg.2	-	6	454	c.426C>G	c.(424-426)TCC>TCG	p.S142S	TXNDC6_uc003esd.1_RNA|TXNDC6_uc010huf.1_Silent_p.S57S|TXNDC6_uc003ese.1_Silent_p.S81S	NM_178130	NP_835231	Q86XW9	TXND6_HUMAN	thioredoxin domain containing 6	142					cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	cytoplasm|cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			breast(3)|ovary(1)|pancreas(1)	5						TCTTTCCATGGGAAACACATT	0.348													6	439					0	0	3.59834e-05	0	0
CEP70	80321	broad.mit.edu	37	3	138219680	138219681	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:138219680_138219681GG>TT	uc003esl.2	-	14	1462_1463	c.1264_1265CC>AA	c.(1264-1266)CCT>AAT	p.P422N	CEP70_uc011bmk.1_Missense_Mutation_p.P402N|CEP70_uc011bml.1_Missense_Mutation_p.P404N|CEP70_uc011bmm.1_Missense_Mutation_p.P270N|CEP70_uc003esm.2_Missense_Mutation_p.P422N	NM_024491	NP_077817	Q8NHQ1	CEP70_HUMAN	centrosomal protein 70 kDa	422					G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding			skin(1)	1						ATTAAGCCAAGGTACCAGTTCT	0.287													13	455					0	0	6.4e-05	0	0
FAIM	55179	broad.mit.edu	37	3	138351772	138351772	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:138351772G>C	uc003esr.2	+	5	651	c.391G>C	c.(391-393)GGT>CGT	p.G131R	FAIM_uc003esp.2_Missense_Mutation_p.G165R|FAIM_uc003esq.2_Missense_Mutation_p.G153R|FAIM_uc003ess.2_Missense_Mutation_p.G131R	NM_001033032	NP_001028204	Q9NVQ4	FAIM1_HUMAN	Fas apoptotic inhibitory molecule isoform c	131					apoptosis	cytoplasm					0						GTTGCTCCAGGGTGAGTTTGT	0.398													4	235					0	0	8.12818e-05	0	0
FAIM	55179	broad.mit.edu	37	3	138351814	138351814	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:138351814G>T	uc003esr.2	+	5	693	c.433G>T	c.(433-435)GGG>TGG	p.G145W	FAIM_uc003esp.2_Missense_Mutation_p.G179W|FAIM_uc003esq.2_Missense_Mutation_p.G167W|FAIM_uc003ess.2_Missense_Mutation_p.G145W	NM_001033032	NP_001028204	Q9NVQ4	FAIM1_HUMAN	Fas apoptotic inhibitory molecule isoform c	145					apoptosis	cytoplasm					0						CTTCAGTATCGGGAACCATGA	0.418													6	331					0.000442599	0.00445669	0.000442599	1	0
PIK3CB	5291	broad.mit.edu	37	3	138376532	138376532	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:138376532C>G	uc011bmq.1	-	20	2942	c.2942G>C	c.(2941-2943)CGG>CCG	p.R981P	PIK3CB_uc011bmn.1_Missense_Mutation_p.R493P|PIK3CB_uc011bmo.1_Missense_Mutation_p.R432P|PIK3CB_uc011bmp.1_Missense_Mutation_p.R568P|PIK3CB_uc003est.1_5'Flank	NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	981	PI3K/PI4K.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						CAGTACTCACCGGCCAAACTT	0.413													7	216					0	0	0.000157383	0	0
PIK3CB	5291	broad.mit.edu	37	3	138431064	138431064	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:138431064C>G	uc011bmq.1	-	8	1385	c.1385G>C	c.(1384-1386)TGG>TCG	p.W462S	PIK3CB_uc011bmo.1_5'UTR|PIK3CB_uc011bmp.1_Missense_Mutation_p.W66S	NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	462	C2 PI3K-type.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						AAATGAAGACCAGCTGTGTAA	0.348													6	353					0	0	0.000157383	0	0
PIK3CB	5291	broad.mit.edu	37	3	138431129	138431130	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:138431129_138431130CC>AG	uc011bmq.1	-	8	1319_1320	c.1319_1320GG>CT	c.(1318-1320)TGG>TCT	p.W440S	PIK3CB_uc011bmo.1_5'UTR|PIK3CB_uc011bmp.1_Missense_Mutation_p.W44S	NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	440	C2 PI3K-type.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TCGTATTTACCCACGCTACAGG	0.337													10	430					0	0	6.4e-05	0	0
PIK3CB	5291	broad.mit.edu	37	3	138456647	138456647	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:138456647G>C	uc011bmq.1	-	4	703	c.703C>G	c.(703-705)CAT>GAT	p.H235D		NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	235	PI3K-RBD.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TCCTTCCCATGAATAGTCAAA	0.408													5	385					0	0	3.59834e-05	0	0
ZBTB38	253461	broad.mit.edu	37	3	141161347	141161347	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:141161347G>C	uc003etw.2	+	8	1099	c.117G>C	c.(115-117)GTG>GTC	p.V39V	ZBTB38_uc010hun.2_Silent_p.V36V|ZBTB38_uc010huo.2_Silent_p.V39V|ZBTB38_uc003ety.2_Silent_p.V39V|ZBTB38_uc010hup.2_Silent_p.V40V	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	39	BTB.				positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CTATCATTGTGGAAGATACCA	0.428													4	188					0	0	3.59834e-05	0	0
PLS1	5357	broad.mit.edu	37	3	142403005	142403005	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:142403005G>C	uc010huv.2	+	7	896	c.737G>C	c.(736-738)AGG>ACG	p.R246T	PLS1_uc003euz.2_Missense_Mutation_p.R246T|PLS1_uc003eva.2_Missense_Mutation_p.R246T	NM_001145319	NP_001138791	Q14651	PLSI_HUMAN	plastin 1	246	Actin-binding 1.					cytoplasm	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(1)	1						GAGATTTCCAGGAATGAAGGT	0.398													4	195					0	0	0.000157383	0	0
SR140	23350	broad.mit.edu	37	3	142731154	142731154	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:142731154C>G	uc003evh.1	+	3	280	c.181C>G	c.(181-183)CGT>GGT	p.R61G	SR140_uc003evi.1_5'UTR|SR140_uc011bnj.1_Missense_Mutation_p.R61G|SR140_uc003evj.1_RNA|SR140_uc003evk.1_Missense_Mutation_p.R61G	NM_001080415	NP_001073884	O15042	SR140_HUMAN	U2-associated SR140 protein	61					RNA processing	nucleus	nucleotide binding|RNA binding				0						TGAAAGTGCCCGTGAAAGCCT	0.388													3	34					0	0	6.4e-05	0	0
CLRN1	7401	broad.mit.edu	37	3	150645853	150645853	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:150645853C>A	uc003eyk.1	-	3	860	c.569G>T	c.(568-570)TGG>TTG	p.W190L	CLRN1OS_uc011bny.1_Intron|CLRN1_uc003eyj.2_Missense_Mutation_p.W114L|CLRN1_uc010hvj.1_RNA	NM_174878	NP_777367	P58418	CLRN1_HUMAN	clarin 1 isoform a	190	Helical; (Potential).				equilibrioception|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	integral to membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			GAAAATGACCCAGAATGAGGT	0.353													8	138					1.58986e-06	2.00859e-05	0.000673444	1	0
DHX36	170506	broad.mit.edu	37	3	154010349	154010350	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:154010349_154010350CG>AT	uc003ezy.3	-	15	1885_1886	c.1804_1805CG>AT	c.(1804-1806)CGA>ATA	p.R602I	DHX36_uc010hvq.2_Missense_Mutation_p.R588I|DHX36_uc003ezz.3_Missense_Mutation_p.R602I	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	602	Helicase C-terminal.					cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			CCTTCCAGCTCGACCTTTTCTC	0.356													7	304					0	0	6.4e-05	0	0
DHX36	170506	broad.mit.edu	37	3	154042037	154042037	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:154042037G>A	uc003ezy.3	-	1	250	c.169C>T	c.(169-171)CTG>TTG	p.L57L	DHX36_uc010hvq.2_Silent_p.L57L|DHX36_uc003ezz.3_Silent_p.L57L	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	57	Gly-rich.					cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			CGGCCTTTCAGGTGCCCGGGA	0.652													5	78					0	0	0.000602214	0	0
SCHIP1	29970	broad.mit.edu	37	3	158980379	158980379	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:158980379C>G	uc003fcq.1	+	4	303	c.198C>G	c.(196-198)CCC>CCG	p.P66P	SCHIP1_uc003fcr.1_5'UTR|IQCJ_uc003fco.2_Silent_p.P66P|IQCJ_uc010hvy.1_Silent_p.P39P|IQCJ_uc003fcp.1_Silent_p.P66P	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	Error:Variant_position_missing_in_Q9P0W5_after_alignment						cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			GGCAGGAGCCCCTGGGGAAGA	0.537													4	97					0	0	0.00024832	0	0
TRIM59	286827	broad.mit.edu	37	3	160156437	160156437	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:160156437G>T	uc003fdm.2	-	3	730	c.535C>A	c.(535-537)CAA>AAA	p.Q179K	IFT80_uc003fda.2_RNA	NM_173084	NP_775107	Q8IWR1	TRI59_HUMAN	tripartite motif-containing 59	179	Potential.					integral to membrane|intracellular	zinc ion binding				0			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			TTATCGCCTTGGATCATTTTC	0.368													8	190					1.12685e-05	0.000138146	0.000274275	1	0
Unknown	0	broad.mit.edu	37	3	160286986	160286986	+	RNA	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:160286986C>G	uc003fdp.1	+	1		c.1530C>G								Homo sapiens keratin 8 pseudogene 12, mRNA (cDNA clone IMAGE:40121068).																		AGATCGAGACCCGCGATGGGA	0.607													4	10					0	0	0.000157383	0	0
SI	6476	broad.mit.edu	37	3	164776979	164776979	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:164776979C>G	uc003fei.2	-	11	1317	c.1255G>C	c.(1255-1257)GGA>CGA	p.G419R		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	419	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TATTTCTGTCCATGGTCATGC	0.338										HNSCC(35;0.089)			3	36					0	0	3.59834e-05	0	0
SI	6476	broad.mit.edu	37	3	164786528	164786528	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:164786528G>T	uc003fei.2	-	5	527	c.465C>A	c.(463-465)CCC>CCA	p.P155P		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	155	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GGAAACGATTGGGTGTCTGAT	0.299										HNSCC(35;0.089)			7	127					0.000442599	0.00445669	0.000442599	1	0
SERPINI2	5276	broad.mit.edu	37	3	167182997	167182997	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:167182997G>T	uc003fer.1	-	4	921	c.863C>A	c.(862-864)CCT>CAT	p.P288H	SERPINI2_uc003fes.1_Missense_Mutation_p.P298H|SERPINI2_uc003fet.1_Missense_Mutation_p.P288H	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	288					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						CACCAACCTAGGGAGGCTTAT	0.363													8	102					0.000978159	0.00917326	0.000978159	1	0
SERPINI1	5274	broad.mit.edu	37	3	167543074	167543074	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:167543074C>A	uc003ffa.3	+	9	1394	c.1196C>A	c.(1195-1197)ACA>AAA	p.T399K	SERPINI1_uc003ffb.3_Missense_Mutation_p.T399K	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	399					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						CATCCTGAAACAATGAACACA	0.323													6	240					3.07112e-06	3.84493e-05	0.000978159	1	0
MECOM	2122	broad.mit.edu	37	3	168845752	168845752	+	Nonsense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:168845752G>C	uc003ffi.3	-	4	415	c.146C>G	c.(145-147)TCA>TGA	p.S49*	MECOM_uc010hwk.1_Nonsense_Mutation_p.S72*|MECOM_uc003ffj.3_Nonsense_Mutation_p.S113*|MECOM_uc011bpi.1_Nonsense_Mutation_p.S49*|MECOM_uc003ffn.3_Nonsense_Mutation_p.S49*|MECOM_uc003ffk.2_Nonsense_Mutation_p.S49*|MECOM_uc003ffl.2_Nonsense_Mutation_p.S209*|MECOM_uc011bpj.1_Nonsense_Mutation_p.S237*|MECOM_uc011bpk.1_Nonsense_Mutation_p.S39*|MECOM_uc010hwn.2_Nonsense_Mutation_p.S237*|MECOM_uc003ffm.1_Nonsense_Mutation_p.S113*	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	49	Interaction with MAPK9, SMAD3 and probably SUV39H1.				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TGAAAATGCTGAGTGAGGAGT	0.443													3	95					0	0	0.00024832	0	0
SKIL	6498	broad.mit.edu	37	3	170079214	170079214	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:170079214C>A	uc003fgu.2	+	2	1807	c.1095C>A	c.(1093-1095)TCC>TCA	p.S365S	SKIL_uc011bps.1_Silent_p.S345S|SKIL_uc003fgv.2_Silent_p.S365S|SKIL_uc003fgw.2_Silent_p.S365S	NM_005414	NP_005405	P12757	SKIL_HUMAN	SKI-like isoform 1	365					cell cycle arrest|negative regulation of cell differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of axonogenesis|protein heterotrimerization|protein homotrimerization|regulation of apoptosis|regulation of apoptosis|response to antibiotic|response to growth factor stimulus|skeletal muscle tissue development	cytoplasm|PML body	chromatin binding|nucleotide binding|protein complex binding|protein domain specific binding|SMAD binding|transcription corepressor activity|transcription repressor activity			ovary(2)|skin(1)	3	all_cancers(22;7.13e-23)|all_epithelial(15;9.95e-28)|all_lung(20;1.23e-16)|Lung NSC(18;5.15e-16)|Ovarian(172;0.000337)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			GAAATCAATCCAAGGCAAGTT	0.289													11	272					7.93312e-07	1.01146e-05	0.000219431	1	0
TNIK	23043	broad.mit.edu	37	3	170856098	170856098	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:170856098C>T	uc003fhh.2	-	15	1835	c.1490G>A	c.(1489-1491)AGA>AAA	p.R497K	TNIK_uc003fhi.2_Missense_Mutation_p.R497K|TNIK_uc003fhj.2_Missense_Mutation_p.R468K|TNIK_uc003fhk.2_Missense_Mutation_p.R497K|TNIK_uc003fhl.2_Missense_Mutation_p.R468K|TNIK_uc003fhm.2_Missense_Mutation_p.R497K|TNIK_uc003fhn.2_Missense_Mutation_p.R468K|TNIK_uc003fho.2_Missense_Mutation_p.R468K	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	497	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			TAAGTAGTCTCTTTCTTGCTT	0.463													5	37					0	0	0.000602214	0	0
ECT2	1894	broad.mit.edu	37	3	172480730	172480730	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:172480730C>G	uc003fii.2	+	10	1081	c.943C>G	c.(943-945)CGA>GGA	p.R315G	ECT2_uc010hwv.1_Missense_Mutation_p.R346G|ECT2_uc003fih.2_Missense_Mutation_p.R314G|ECT2_uc003fij.1_Missense_Mutation_p.R315G|ECT2_uc003fik.1_Missense_Mutation_p.R315G|ECT2_uc003fil.1_Missense_Mutation_p.R346G	NM_018098	NP_060568	Q9H8V3	ECT2_HUMAN	epithelial cell transforming sequence 2 oncogene	315	BRCT 2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|ovary(1)|skin(1)	4	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.33e-14)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)			AATGGATGCCCGAGCTGGAGA	0.328													4	114					0	0	3.59834e-05	0	0
MRPL47	57129	broad.mit.edu	37	3	179320561	179320561	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:179320561C>G	uc003fjz.2	-	2	145	c.123G>C	c.(121-123)AAG>AAC	p.K41N	MRPL47_uc003fka.2_Intron|MRPL47_uc003fkb.2_Intron|NDUFB5_uc003fkc.2_5'Flank|NDUFB5_uc003fkd.2_5'Flank|NDUFB5_uc003fke.2_5'Flank	NM_020409	NP_065142	Q9HD33	RM47_HUMAN	mitochondrial ribosomal protein L47 isoform a	41					translation	mitochondrial ribosome	structural constituent of ribosome				0	all_cancers(143;9.62e-16)|Ovarian(172;0.0172)|Breast(254;0.191)		OV - Ovarian serous cystadenocarcinoma(80;5.98e-26)|GBM - Glioblastoma multiforme(14;0.0169)|BRCA - Breast invasive adenocarcinoma(182;0.18)			TTGGTGTACTCTTAGGCAACA	0.303													5	214					0	0	0.000602214	0	0
ATP11B	23200	broad.mit.edu	37	3	182590272	182590272	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:182590272C>G	uc003flb.2	+	18	2252	c.1995C>G	c.(1993-1995)TTC>TTG	p.F665L	ATP11B_uc003flc.2_Missense_Mutation_p.F249L|ATP11B_uc011bqm.1_5'UTR|ATP11B_uc010hxf.1_5'Flank	NM_014616	NP_055431	Q9Y2G3	AT11B_HUMAN	ATPase, class VI, type 11B	665	Cytoplasmic (Potential).				aminophospholipid transport|ATP biosynthetic process	integral to membrane|nuclear inner membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3	all_cancers(143;9.04e-15)|Ovarian(172;0.0355)		all cancers(12;1.2e-42)|Epithelial(37;2.77e-36)|LUSC - Lung squamous cell carcinoma(7;7.58e-24)|Lung(8;4.66e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.35e-20)			CAGCTGTTTTCCAGTTCATAG	0.363													5	112					0	0	0.000602214	0	0
DCUN1D1	54165	broad.mit.edu	37	3	182679109	182679109	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:182679109G>T	uc003fld.1	-	4	474	c.425C>A	c.(424-426)CCC>CAC	p.P142H	DCUN1D1_uc011bqn.1_5'UTR	NM_020640	NP_065691	Q96GG9	DCNL1_HUMAN	RP42 homolog	142	DCUN1.					ubiquitin ligase complex	protein binding			ovary(1)	1	all_cancers(143;9.04e-15)|Ovarian(172;0.0355)		all cancers(12;2.54e-44)|Epithelial(37;4.71e-38)|LUSC - Lung squamous cell carcinoma(7;5.04e-25)|Lung(8;5.03e-23)|OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			TTCCATCTTGGGTATCTGGGC	0.308													10	424					0.000219431	0.00241088	0.000219431	1	0
KLHL24	54800	broad.mit.edu	37	3	183368742	183368742	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:183368742C>G	uc003flv.2	+	3	893	c.598C>G	c.(598-600)CAG>GAG	p.Q200E	KLHL24_uc003flw.2_Missense_Mutation_p.Q200E|KLHL24_uc003flx.2_Missense_Mutation_p.Q200E	NM_017644	NP_060114	Q6TFL4	KLH24_HUMAN	DRE1 protein	200	BACK.					axon|cytoplasm|perikaryon				ovary(1)	1	all_cancers(143;2.88e-10)|Ovarian(172;0.0303)		all cancers(12;1.43e-42)|Epithelial(37;1.73e-36)|OV - Ovarian serous cystadenocarcinoma(80;8.75e-22)			GGATGTATCCCAGCACGAAGA	0.363													4	190					0	0	3.59834e-05	0	0
DVL3	1857	broad.mit.edu	37	3	183881484	183881484	+	Silent	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:183881484A>G	uc003fms.2	+	2	341	c.201A>G	c.(199-201)CTA>CTG	p.L67L	DVL3_uc011bqw.1_Silent_p.L67L|DVL3_uc003fmt.2_5'UTR|DVL3_uc003fmu.2_5'Flank	NM_004423	NP_004414	Q92997	DVL3_HUMAN	dishevelled 3	67	DIX.				canonical Wnt receptor signaling pathway|intracellular signal transduction|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent	cytoplasm	beta-catenin binding|frizzled binding|protease binding|protein heterodimerization activity|signal transducer activity			ovary(1)|lung(1)|breast(1)	3	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.08e-34)|OV - Ovarian serous cystadenocarcinoma(80;1.31e-22)			ATGCCAAGCTACCATGCTTCA	0.552													3	92					0	0	6.4e-05	0	0
AP2M1	1173	broad.mit.edu	37	3	183897980	183897980	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:183897980C>A	uc011bqx.1	+	4	521	c.364C>A	c.(364-366)CAG>AAG	p.Q122K	AP2M1_uc003fmw.2_Missense_Mutation_p.Q122K|AP2M1_uc003fmx.2_Missense_Mutation_p.Q122K|AP2M1_uc003fmy.2_Missense_Mutation_p.Q122K|AP2M1_uc011bqy.1_5'Flank|AP2M1_uc011bqz.1_5'Flank	NM_004068	NP_004059	Q96CW1	AP2M1_HUMAN	adaptor-related protein complex 2, mu 1 subunit	122					axon guidance|cellular membrane organization|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|clathrin coat of coated pit|cytosol|endocytic vesicle membrane|peroxisomal membrane	lipid binding|protein binding|transporter activity				0	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.92e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TGGCTACCCACAGAATTCCGA	0.507													4	62					0.000157383	0.00173811	0.000157383	1	0
PSMD2	5708	broad.mit.edu	37	3	184022170	184022170	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:184022170C>G	uc003fnn.1	+	12	1563	c.1530C>G	c.(1528-1530)TCC>TCG	p.S510S	PSMD2_uc011brj.1_Silent_p.S351S|PSMD2_uc011brk.1_Silent_p.S380S	NM_002808	NP_002799	Q13200	PSMD2_HUMAN	proteasome 26S non-ATPase subunit 2	510	PC 3.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding				0	all_cancers(143;1.54e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Bortezomib(DB00188)	ATTCAAAGTCCAGCATGGAGG	0.448													4	170					0	0	8.12818e-05	0	0
CHRD	8646	broad.mit.edu	37	3	184099524	184099524	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:184099524G>C	uc003fov.2	+	5	778	c.532G>C	c.(532-534)GGG>CGG	p.G178R	CHRD_uc003fow.2_5'UTR|CHRD_uc003fox.2_Missense_Mutation_p.G178R|CHRD_uc003foy.2_5'UTR|CHRD_uc010hyc.2_5'UTR|CHRD_uc011brr.1_5'Flank	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	178	CHRD 1.				BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCTGCTGACAGGGCCGAGGTC	0.642													3	21					0	0	0.00024832	0	0
LIPH	200879	broad.mit.edu	37	3	185232218	185232218	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:185232218G>C	uc003fpm.2	-	8	1184	c.1074C>G	c.(1072-1074)ACC>ACG	p.T358T	LIPH_uc010hyh.2_Silent_p.T324T	NM_139248	NP_640341	Q8WWY8	LIPH_HUMAN	lipase, member H precursor	358					lipid catabolic process	extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(1)|pancreas(1)	2	all_cancers(143;8.87e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			TGGATTCTGTGGTGTTTCCAG	0.358													5	380					0	0	0.000602214	0	0
LIPH	200879	broad.mit.edu	37	3	185234902	185234903	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:185234902_185234903GG>TT	uc003fpm.2	-	7	1044_1045	c.934_935CC>AA	c.(934-936)CCA>AAA	p.P312K	LIPH_uc010hyh.2_Missense_Mutation_p.P278K	NM_139248	NP_640341	Q8WWY8	LIPH_HUMAN	lipase, member H precursor	312					lipid catabolic process	extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(1)|pancreas(1)	2	all_cancers(143;8.87e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			CTTCGTCATTGGAGGATCTTTC	0.386													11	424					0	0	6.4e-05	0	0
LIPH	200879	broad.mit.edu	37	3	185241944	185241944	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:185241944C>A	uc003fpm.2	-	5	743	c.633G>T	c.(631-633)CTG>CTT	p.L211L	LIPH_uc010hyh.2_Silent_p.L177L	NM_139248	NP_640341	Q8WWY8	LIPH_HUMAN	lipase, member H precursor	211					lipid catabolic process	extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(1)|pancreas(1)	2	all_cancers(143;8.87e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			CCTTGTAGCCCAGTGCTAAAA	0.398													9	320					7.48243e-07	9.56199e-06	0.000442599	1	0
LIPH	200879	broad.mit.edu	37	3	185251416	185251416	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:185251416C>A	uc003fpm.2	-	3	579	c.469G>T	c.(469-471)GCC>TCC	p.A157S	LIPH_uc010hyh.2_Missense_Mutation_p.A157S	NM_139248	NP_640341	Q8WWY8	LIPH_HUMAN	lipase, member H precursor	157					lipid catabolic process	extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(1)|pancreas(1)	2	all_cancers(143;8.87e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			GATATGTGGGCTCCTAGACTT	0.483													8	361					0.000422831	0.00445499	0.000422831	1	0
SENP2	59343	broad.mit.edu	37	3	185330410	185330410	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:185330410C>A	uc003fpn.2	+	9	1004	c.833C>A	c.(832-834)ACA>AAA	p.T278K	SENP2_uc011brv.1_Missense_Mutation_p.T268K|SENP2_uc011brw.1_Missense_Mutation_p.T91K	NM_021627	NP_067640	Q9HC62	SENP2_HUMAN	SUMO1/sentrin/SMT3 specific protease 2	278					mRNA transport|protein desumoylation|protein transport|proteolysis|regulation of Wnt receptor signaling pathway|transmembrane transport|Wnt receptor signaling pathway	cytoplasm|nuclear membrane|nuclear pore	protein binding|SUMO-specific protease activity				0	all_cancers(143;1.28e-10)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			CTTGTTGAAACAAGGGGACCT	0.313													7	554					3.07112e-06	3.84493e-05	0.000978159	1	0
IGF2BP2	10644	broad.mit.edu	37	3	185364868	185364868	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:185364868G>T	uc003fpo.2	-	15	1731	c.1652C>A	c.(1651-1653)CCA>CAA	p.P551Q	IGF2BP2_uc010hyi.2_Missense_Mutation_p.P494Q|IGF2BP2_uc010hyj.2_Missense_Mutation_p.P488Q|IGF2BP2_uc010hyk.2_Missense_Mutation_p.P415Q|IGF2BP2_uc010hyl.2_Missense_Mutation_p.P445Q|IGF2BP2_uc003fpp.2_Missense_Mutation_p.P508Q|IGF2BP2_uc003fpq.2_Missense_Mutation_p.P556Q	NM_006548	NP_006539	Q9Y6M1	IF2B2_HUMAN	insulin-like growth factor 2 mRNA binding	551	KH 4.				anatomical structure morphogenesis|negative regulation of translation	cytoskeletal part|cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity				0	all_cancers(143;5.84e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			ATTTTCATCTGGCGTTTGGTC	0.512													10	381					6.31663e-08	8.27427e-07	0.000308642	1	0
ETV5	2119	broad.mit.edu	37	3	185782266	185782266	+	Splice_Site	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:185782266C>A	uc003fpz.2	-	9	1158	c.911_splice	c.e9-1	p.E304_splice	ETV5_uc003fpy.2_Splice_Site_p.E346_splice	NM_004454	NP_004445	P41161	ETV5_HUMAN	ets variant gene 5 (ets-related molecule)						cellular response to oxidative stress	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|skin(2)|breast(1)	5	all_cancers(143;4.06e-12)|Ovarian(172;0.0386)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.62e-24)			TTAGGCACTTCTGAAAGGAAA	0.423			T	TMPRSS2|SCL45A3	Prostate 								7	131					0.000978159	0.00917326	0.000978159	1	0
EIF4A2	1974	broad.mit.edu	37	3	186502475	186502475	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:186502475C>G	uc003fqs.2	+	3	237	c.198C>G	c.(196-198)CCC>CCG	p.P66P	EIF4A2_uc003fqt.2_RNA|EIF4A2_uc003fqu.2_Silent_p.P67P|EIF4A2_uc003fqv.2_Missense_Mutation_p.P18R|EIF4A2_uc003fqw.2_Missense_Mutation_p.P18R|SNORD2_uc010hyu.1_5'Flank|EIF4A2_uc011bsb.1_5'Flank|MIR1248_hsa-mir-1248|MI0006383_5'Flank|SNORA81_uc010hyv.1_5'Flank|SNORA63_uc010hyw.1_5'Flank|SNORA4_uc010hyx.1_5'Flank	NM_001967	NP_001958	Q14240	IF4A2_HUMAN	eukaryotic translation initiation factor 4A2	66	Helicase ATP-binding.				interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	ATP binding|ATP-dependent helicase activity|protein binding|translation initiation factor activity			ovary(2)|breast(2)	4	all_cancers(143;2.68e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.07e-20)	GBM - Glioblastoma multiforme(93;0.0704)		CTATTATTCCCTGTATTAAAG	0.388			T	BCL6	NHL								4	183					0	0	3.59834e-05	0	0
MASP1	5648	broad.mit.edu	37	3	186971037	186971037	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:186971037G>C	uc003frh.1	-	6	1143	c.811C>G	c.(811-813)CAG>GAG	p.Q271E	MASP1_uc003fri.2_Missense_Mutation_p.Q271E|MASP1_uc003frj.2_Missense_Mutation_p.Q240E|MASP1_uc003frk.1_Missense_Mutation_p.Q271E|MASP1_uc011bse.1_Missense_Mutation_p.Q245E	NM_001879	NP_001870	P48740	MASP1_HUMAN	mannan-binding lectin serine protease 1 isoform	271	Interaction with FCN2.|CUB 2.				complement activation, lectin pathway|negative regulation of complement activation|proteolysis	extracellular space	calcium ion binding|calcium-dependent protein binding|protein binding|protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|breast(1)|liver(1)	4	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.49e-18)	GBM - Glioblastoma multiforme(93;0.0366)		CTGTGGCTCTGGGTGCTGATG	0.522													4	195					0	0	0.00024832	0	0
BCL6	604	broad.mit.edu	37	3	187447753	187447753	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:187447753C>G	uc003frp.3	-	5	897	c.440G>C	c.(439-441)CGG>CCG	p.R147P	BCL6_uc011bsf.1_Missense_Mutation_p.R147P|BCL6_uc010hza.2_Missense_Mutation_p.R45P|BCL6_uc003frq.1_Missense_Mutation_p.R147P	NM_001130845	NP_001124317	P41182	BCL6_HUMAN	B-cell lymphoma 6 protein isoform 1	147					negative regulation of B cell apoptosis|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|protein import into nucleus, translocation|regulation of germinal center formation|response to DNA damage stimulus	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|lung(2)|central_nervous_system(1)	5	all_cancers(143;9.45e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0141)		CATCAGCATCCGGCTGTTGAG	0.542			T|Mis	IG loci|ZNFN1A1|LCP1|PIM1|TFRC|MHC2TA|NACA|HSPCB|HSPCA|HIST1H4I|IL21R| POU2AF1|ARHH|EIF4A2|SFRS3	NHL|CLL								4	85					0	0	8.12818e-05	0	0
ATP13A4	84239	broad.mit.edu	37	3	193120472	193120472	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:193120472G>C	uc003ftd.2	-	30	3668	c.3560C>G	c.(3559-3561)CCA>CGA	p.P1187R	ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	1187	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		CTCAAATACTGGATTGCTGTA	0.453													4	75					0	0	8.12818e-05	0	0
ATP13A3	79572	broad.mit.edu	37	3	194168637	194168637	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:194168637C>A	uc003fty.3	-	12	1654	c.1252G>T	c.(1252-1254)GTG>TTG	p.V418L	ATP13A3_uc003ftz.1_Missense_Mutation_p.V124L	NM_024524	NP_078800	Q9H7F0	AT133_HUMAN	ATPase type 13A3	418	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(1)	1	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		GCAACTGCCACAAGACATAGT	0.353													6	277					0.000274275	0.00290969	0.000274275	1	0
SDHAP2	727956	broad.mit.edu	37	3	195400728	195400728	+	Silent	SNP	A	G	G	rs12107841	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:195400728A>G	uc003fuw.2	+	9	1218	c.24A>G	c.(22-24)CCA>CCG	p.P8P	SDHAP2_uc011btb.1_Missense_Mutation_p.S156G|SDHAP2_uc011btc.1_RNA|SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						GATTGTGCCCAGCCTGTACGC	0.587													7	53					0	0	0.000442599	0	0
SDHAP2	727956	broad.mit.edu	37	3	195400795	195400795	+	Missense_Mutation	SNP	C	T	T	rs7615357	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:195400795C>T	uc003fuw.2	+	9	1285	c.91C>T	c.(91-93)CGC>TGC	p.R31C	SDHAP2_uc011btb.1_Missense_Mutation_p.S178L|SDHAP2_uc011btc.1_RNA|SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						GGGGCAAACTCGCTGTTGGAC	0.592													5	37					0	0	0.000157383	0	0
SDHAP2	727956	broad.mit.edu	37	3	195400799	195400799	+	Missense_Mutation	SNP	G	A	A	rs7635172	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:195400799G>A	uc003fuw.2	+	9	1289	c.95G>A	c.(94-96)TGT>TAT	p.C32Y	SDHAP2_uc011btb.1_Silent_p.L179L|SDHAP2_uc011btc.1_RNA|SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						CAAACTCGCTGTTGGACCTGG	0.597													5	35					0	0	0.000274275	0	0
MUC20	200958	broad.mit.edu	37	3	195460026	195460026	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:195460026C>G	uc010hzo.2	+	5	1680	c.1554C>G	c.(1552-1554)CAC>CAG	p.H518Q	MUC20_uc010hzp.2_Missense_Mutation_p.H483Q	NM_152673	NP_689886	Q8N307	MUC20_HUMAN	mucin 20 isoform L	689	Interaction with MET.				protein homooligomerization	apical plasma membrane|basal plasma membrane|extracellular region|microvillus membrane					0	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)	Lung NSC(153;0.191)	Epithelial(36;1e-21)|all cancers(36;9.02e-20)|OV - Ovarian serous cystadenocarcinoma(49;1.6e-18)|Lung(62;0.000104)|LUSC - Lung squamous cell carcinoma(58;0.000128)	GBM - Glioblastoma multiforme(46;1.66e-05)		TCCAGCTCCACCGGGAACTCC	0.612													2	6					0	0	6.4e-05	0	0
PAK2	5062	broad.mit.edu	37	3	196532250	196532250	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:196532250C>G	uc003fwy.3	+	5	786	c.464C>G	c.(463-465)CCA>CGA	p.P155R		NM_002577	NP_002568	Q13177	PAK2_HUMAN	p21-activated kinase 2	155					axon guidance|cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of apoptosis|regulation of defense response to virus by virus|regulation of growth|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|nucleus|perinuclear region of cytoplasm|plasma membrane	ATP binding|identical protein binding|protein kinase binding|protein serine/threonine kinase activity|protein tyrosine kinase activator activity			ovary(1)|lung(1)	2	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.07e-23)|all cancers(36;6.38e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00405)		TCTGGAACACCAGCAGTAAGT	0.274													4	188					0	0	0.00024832	0	0
PAK2	5062	broad.mit.edu	37	3	196534737	196534737	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:196534737C>A	uc003fwy.3	+	7	983	c.661C>A	c.(661-663)CAG>AAG	p.Q221K		NM_002577	NP_002568	Q13177	PAK2_HUMAN	p21-activated kinase 2	221					axon guidance|cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of apoptosis|regulation of defense response to virus by virus|regulation of growth|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|nucleus|perinuclear region of cytoplasm|plasma membrane	ATP binding|identical protein binding|protein kinase binding|protein serine/threonine kinase activity|protein tyrosine kinase activator activity			ovary(1)|lung(1)	2	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.07e-23)|all cancers(36;6.38e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00405)		TTTAGACAAACAGAAAAAGAA	0.373													6	157					0.000274275	0.00290969	0.000274275	1	0
PAK2	5062	broad.mit.edu	37	3	196555232	196555232	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:196555232C>G	uc003fwy.3	+	15	1853	c.1531C>G	c.(1531-1533)CCA>GCA	p.P511A		NM_002577	NP_002568	Q13177	PAK2_HUMAN	p21-activated kinase 2	511					axon guidance|cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of apoptosis|regulation of defense response to virus by virus|regulation of growth|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|nucleus|perinuclear region of cytoplasm|plasma membrane	ATP binding|identical protein binding|protein kinase binding|protein serine/threonine kinase activity|protein tyrosine kinase activator activity			ovary(1)|lung(1)	2	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.07e-23)|all cancers(36;6.38e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00405)		TAGCTTGACACCACTGATCAT	0.403													5	250					0	0	0.000602214	0	0
IQCG	84223	broad.mit.edu	37	3	197639590	197639590	+	Missense_Mutation	SNP	G	C	C	rs151126155		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:197639590G>C	uc003fyo.2	-	8	1065	c.919C>G	c.(919-921)CGG>GGG	p.R307G	IQCG_uc003fyn.2_Missense_Mutation_p.R209G|IQCG_uc003fyp.2_Missense_Mutation_p.R307G|IQCG_uc003fym.2_Missense_Mutation_p.R8G	NM_001134435	NP_001127907	Q9H095	IQCG_HUMAN	IQ motif containing G	307											0	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;7.19e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.149)		GTATGAGTCCGGGCCTCTTCT	0.448													5	207					0	0	8.12818e-05	0	0
IQCG	84223	broad.mit.edu	37	3	197665577	197665577	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:197665577G>C	uc003fyo.2	-	4	503	c.357C>G	c.(355-357)CCC>CCG	p.P119P	IQCG_uc003fyn.2_Silent_p.P21P|IQCG_uc003fyp.2_Silent_p.P119P|IQCG_uc003fyq.3_Silent_p.P119P	NM_001134435	NP_001127907	Q9H095	IQCG_HUMAN	IQ motif containing G	119											0	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;7.19e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.149)		TTAACGGACTGGGTATTTTTG	0.383													8	299					0	0	0.000274275	0	0
RNF212	285498	broad.mit.edu	37	4	1102144	1102144	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:1102144A>G	uc003gcj.2	-	2	488	c.158T>C	c.(157-159)TTG>TCG	p.L53S	RNF212_uc003gci.2_Missense_Mutation_p.L53S|RNF212_uc010ibp.2_RNA|RNF212_uc010ibq.2_Missense_Mutation_p.L53S|RNF212_uc003gck.2_Missense_Mutation_p.L53S	NM_001131034	NP_001124506	Q495C1	RN212_HUMAN	ring finger protein 212 isoform a	53							zinc ion binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (64;0.151)		CTTTGAAAGCAAAACTGTACG	0.274													16	287					0	0	0.000132079	0	0
CRIPAK	285464	broad.mit.edu	37	4	1389402	1389402	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:1389402C>T	uc003gdf.2	+	1	4063	c.1103C>T	c.(1102-1104)GCC>GTC	p.A368V		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	368	Interaction with PAK1.				ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			CACACACGTGCCCATGTGGAG	0.657													7	245					0	0	0.000442599	0	0
FAM193A	8603	broad.mit.edu	37	4	2659570	2659570	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:2659570G>T	uc010icl.2	+	6	830	c.479G>T	c.(478-480)TGG>TTG	p.W160L	FAM193A_uc010ick.2_Missense_Mutation_p.W360L|FAM193A_uc003gfd.2_Missense_Mutation_p.W160L|FAM193A_uc011bvm.1_Missense_Mutation_p.W184L|FAM193A_uc011bvn.1_Missense_Mutation_p.W160L|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Missense_Mutation_p.W14L	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	160										ovary(3)	3						ACAGAAGACTGGGAGCTTTTT	0.348													11	348					0.000308642	0.00326428	0.000308642	1	0
CYTL1	54360	broad.mit.edu	37	4	5018625	5018625	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:5018625C>G	uc003gig.2	-	3	290	c.265G>C	c.(265-267)GTA>CTA	p.V89L		NM_018659	NP_061129	Q9NRR1	CYTL1_HUMAN	cytokine-like 1 precursor	89					signal transduction	extracellular space|soluble fraction	receptor binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.164)		AAGGAATCTACCTGGGCCACT	0.527													4	140					0	0	0.00024832	0	0
EVC2	132884	broad.mit.edu	37	4	5567001	5567001	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:5567001G>C	uc003gij.2	-	21	3697	c.3643C>G	c.(3643-3645)CGC>GGC	p.R1215G	EVC2_uc011bwb.1_Missense_Mutation_p.R655G|EVC2_uc003gik.2_Missense_Mutation_p.R1135G	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	1215						integral to membrane				large_intestine(3)|ovary(2)	5						TTTCTCTTGCGGGCCCACAGC	0.572													6	125					0	0	3.59834e-05	0	0
KIAA0232	9778	broad.mit.edu	37	4	6826400	6826400	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:6826400C>T	uc003gjr.3	+	3	683	c.220C>T	c.(220-222)CTG>TTG	p.L74L	KIAA0232_uc003gjq.3_Silent_p.L74L	NM_014743	NP_055558	Q92628	K0232_HUMAN	hypothetical protein LOC9778	74							ATP binding			ovary(2)	2						TGACTACGACCTGCAGGAACA	0.393													7	65					0	0	0.000274275	0	0
KIAA0232	9778	broad.mit.edu	37	4	6865640	6865640	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:6865640C>A	uc003gjr.3	+	7	3994	c.3531C>A	c.(3529-3531)CCC>CCA	p.P1177P	KIAA0232_uc003gjq.3_Silent_p.P1177P	NM_014743	NP_055558	Q92628	K0232_HUMAN	hypothetical protein LOC9778	1177							ATP binding			ovary(2)	2						AATTCCTTCCCAGGTTAAAAA	0.423													7	106					7.48243e-07	9.56199e-06	0.000442599	1	0
CCDC96	257236	broad.mit.edu	37	4	7044163	7044163	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:7044163T>C	uc003gjv.2	-	1	566	c.503A>G	c.(502-504)GAG>GGG	p.E168G	TADA2B_uc003gjw.3_5'Flank|TADA2B_uc010idi.2_5'Flank	NM_153376	NP_699207	Q2M329	CCD96_HUMAN	coiled-coil domain containing 96	168	Glu-rich.										0						gtcctcttcctccccctccac	0.413													3	48					0	0	3.59834e-05	0	0
ABLIM2	84448	broad.mit.edu	37	4	8009897	8009897	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:8009897C>T	uc003gko.2	-	15	1548	c.1405G>A	c.(1405-1407)GAT>AAT	p.D469N	ABLIM2_uc003gkk.2_Missense_Mutation_p.D133N|ABLIM2_uc003gkl.2_Missense_Mutation_p.D197N|ABLIM2_uc003gkj.3_Missense_Mutation_p.D503N|ABLIM2_uc003gkm.3_Missense_Mutation_p.D417N|ABLIM2_uc003gkp.2_Missense_Mutation_p.D428N|ABLIM2_uc003gkq.2_Missense_Mutation_p.D469N|ABLIM2_uc003gkr.2_Missense_Mutation_p.D418N|ABLIM2_uc003gks.3_Missense_Mutation_p.D429N|MIR95_hsa-mir-95|MI0000097_5'Flank	NM_001130084	NP_001123556	Q6H8Q1	ABLM2_HUMAN	actin binding LIM protein family, member 2	469					axon guidance|cytoskeleton organization	actin cytoskeleton|cytoplasm|intermediate filament cytoskeleton|nucleus	actin binding|zinc ion binding			pancreas(3)	3						GTGTCTGCATCCCCCTTGAGC	0.542													11	71					0	0	0.000673444	0	0
HS3ST1	9957	broad.mit.edu	37	4	11400941	11400941	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:11400941T>C	uc003gmq.2	-	2	1012	c.689A>G	c.(688-690)AAG>AGG	p.K230R		NM_005114	NP_005105	O14792	HS3S1_HUMAN	heparan sulfate D-glucosaminyl	230						Golgi lumen|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			skin(1)	1						CCTCTCGACCTTTTGGATCTC	0.567													3	69					0	0	6.4e-05	0	0
C1QTNF7	114905	broad.mit.edu	37	4	15443813	15443813	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:15443813C>A	uc011bxb.1	+	3	487	c.260C>A	c.(259-261)CCG>CAG	p.P87Q	C1QTNF7_uc003gno.2_Missense_Mutation_p.P94Q|C1QTNF7_uc003gnp.2_Missense_Mutation_p.P87Q	NM_001135171	NP_001128643	Q9BXJ2	C1QT7_HUMAN	C1q and tumor necrosis factor related protein 7	87	Collagen-like.					collagen					0						AAGACTGGACCGCTAGGTCTT	0.448													6	183					0.000442599	0.00445669	0.000442599	1	0
CC2D2A	57545	broad.mit.edu	37	4	15534904	15534904	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:15534904C>T	uc010idv.2	+	15	1800	c.1555C>T	c.(1555-1557)CTT>TTT	p.L519F	CC2D2A_uc003gnx.2_Missense_Mutation_p.L470F|CC2D2A_uc003gnv.2_Missense_Mutation_p.L519F	NM_001080522	NP_001073991	Q9P2K1	C2D2A_HUMAN	coiled-coil and C2 domain containing 2A isoform	519					cell projection organization	cilium|microtubule basal body				pancreas(2)|ovary(1)	3						GATGAAATCCCTTCGAGAGTT	0.274													10	70					0	0	0.000442599	0	0
TAPT1	202018	broad.mit.edu	37	4	16189881	16189881	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:16189881C>G	uc010ied.1	-	5	791	c.710G>C	c.(709-711)GGG>GCG	p.G237A	TAPT1_uc011bxd.1_RNA|TAPT1_uc011bxe.1_Missense_Mutation_p.G126A	NM_153365	NP_699196	Q6NXT6	TAPT1_HUMAN	transmembrane anterior posterior transformation	237	Helical; (Potential).					integral to membrane	growth hormone-releasing hormone receptor activity				0						AGGAATCACCCCAATGTGGGC	0.383													5	164					0	0	8.12818e-05	0	0
DCAF16	54876	broad.mit.edu	37	4	17805544	17805544	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:17805544C>G	uc003gpn.2	-	3	1282	c.221G>C	c.(220-222)TGG>TCG	p.W74S	DCAF16_uc003gpo.2_RNA	NM_017741	NP_060211	Q9NXF7	DCA16_HUMAN	DDB1 and CUL4 associated factor 16	74						CUL4 RING ubiquitin ligase complex				ovary(1)	1						ATGATACAACCAGGAATTAGG	0.433													4	131					0	0	0.00024832	0	0
NCAPG	64151	broad.mit.edu	37	4	17843954	17843954	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:17843954C>A	uc003gpp.2	+	20	3052	c.2876C>A	c.(2875-2877)TCA>TAA	p.S959*	NCAPG_uc011bxj.1_Nonsense_Mutation_p.S468*	NM_022346	NP_071741	Q9BPX3	CND3_HUMAN	chromosome condensation protein G	959					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|nucleus	protein binding			large_intestine(1)	1				STAD - Stomach adenocarcinoma(129;0.18)		GTGACAGTTTCAGCTAGGACG	0.363													5	41					0.000157383	0.00173811	0.000157383	1	0
SLIT2	9353	broad.mit.edu	37	4	20611664	20611664	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:20611664C>A	uc003gpr.1	+	34	3925	c.3721C>A	c.(3721-3723)CAC>AAC	p.H1241N	SLIT2_uc003gps.1_Missense_Mutation_p.H1233N	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1241	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TGGAAACTTCCACATTGTGGA	0.393													6	112					0.000978159	0.00917326	0.000978159	1	0
GPR125	166647	broad.mit.edu	37	4	22390726	22390726	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:22390726C>G	uc003gqm.1	-	18	2973	c.2708G>C	c.(2707-2709)CGG>CCG	p.R903P	GPR125_uc010ieo.1_Missense_Mutation_p.R759P|GPR125_uc003gql.1_Missense_Mutation_p.R30P	NM_145290	NP_660333	Q8IWK6	GP125_HUMAN	G protein-coupled receptor 125 precursor	903	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	G-protein coupled receptor activity			skin(1)	1		Breast(46;0.198)				TGCGTTTGGCCGACTGCCGTA	0.423													4	161					0	0	3.59834e-05	0	0
GPR125	166647	broad.mit.edu	37	4	22422610	22422610	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:22422610C>G	uc003gqm.1	-	12	1973	c.1708G>C	c.(1708-1710)GGA>CGA	p.G570R	GPR125_uc010ieo.1_Missense_Mutation_p.G444R|GPR125_uc003gqn.1_Missense_Mutation_p.G344R|GPR125_uc003gqo.2_Missense_Mutation_p.G570R	NM_145290	NP_660333	Q8IWK6	GP125_HUMAN	G protein-coupled receptor 125 precursor	570	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	G-protein coupled receptor activity			skin(1)	1		Breast(46;0.198)				TCCGAAAGTCCTGTACGATCA	0.473													4	146					0	0	3.59834e-05	0	0
DHX15	1665	broad.mit.edu	37	4	24534619	24534619	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:24534619G>C	uc003gqx.2	-	12	2136	c.1968C>G	c.(1966-1968)TCC>TCG	p.S656S	DHX15_uc003gqv.2_Silent_p.S62S|DHX15_uc003gqw.2_Silent_p.S79S	NM_001358	NP_001349	O43143	DHX15_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 15	656					mRNA processing	U12-type spliceosomal complex	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(1)	1		Breast(46;0.0503)				CATTGTCTGCGGACATCAGGG	0.408													5	283					0	0	0.000274275	0	0
ARAP2	116984	broad.mit.edu	37	4	36189153	36189153	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:36189153G>T	uc003gsq.1	-	8	1936	c.1598C>A	c.(1597-1599)TCA>TAA	p.S533*	ARAP2_uc003gsr.1_Nonsense_Mutation_p.S533*	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	533	PH 1.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TCGTACTGTTGATATAGCAGA	0.308													8	119					3.07112e-06	3.84493e-05	0.000978159	1	0
WDR19	57728	broad.mit.edu	37	4	39219726	39219726	+	Splice_Site	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:39219726G>C	uc003gtv.2	+	14	1633	c.1479_splice	c.e14+1	p.D493_splice	WDR19_uc003gtu.1_Splice_Site|WDR19_uc011byi.1_Splice_Site_p.D333_splice|WDR19_uc003gtw.1_Splice_Site_p.D90_splice	NM_025132	NP_079408	Q8NEZ3	WDR19_HUMAN	WD repeat domain 19						cell projection organization	microtubule basal body|motile cilium|photoreceptor connecting cilium	binding			large_intestine(1)	1						TGGTACAGATGTATGTATTGC	0.363													5	247					0	0	0.000602214	0	0
RFC1	5981	broad.mit.edu	37	4	39306456	39306456	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:39306456G>C	uc003gty.1	-	15	2225	c.2091C>G	c.(2089-2091)ACC>ACG	p.T697T	RFC1_uc003gtx.1_Silent_p.T696T	NM_002913	NP_002904	P35251	RFC1_HUMAN	replication factor C large subunit	697					DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|telomere maintenance via telomerase|transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|enzyme activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4						CTTTGATGCTGGTATTGTTCA	0.343													5	250					0	0	0.000157383	0	0
PDS5A	23244	broad.mit.edu	37	4	39875996	39875996	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:39875996C>G	uc003guv.3	-	20	2730	c.2190G>C	c.(2188-2190)AGG>AGC	p.R730S	PDS5A_uc010ifo.2_Missense_Mutation_p.R690S	NM_001100399	NP_001093869	Q29RF7	PDS5A_HUMAN	PDS5, regulator of cohesion maintenance, homolog	730					cell division|mitosis|negative regulation of DNA replication	chromatin|nucleus	identical protein binding				0						GTGGAGTACCCCTCTTTGCTT	0.348													4	97					0	0	0.000157383	0	0
N4BP2	55728	broad.mit.edu	37	4	40104813	40104813	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:40104813G>T	uc003guy.3	+	4	1686	c.1348G>T	c.(1348-1350)GGA>TGA	p.G450*	N4BP2_uc010ifq.2_Nonsense_Mutation_p.G370*|N4BP2_uc010ifr.2_Nonsense_Mutation_p.G370*	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2	450	ATP (Potential).					cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						AGGTCTTCCGGGATCTGGAAA	0.353													7	171					5.16669e-11	6.89497e-10	0.000978159	1	0
APBB2	323	broad.mit.edu	37	4	40832523	40832523	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:40832523G>T	uc003gvl.2	-	13	2228	c.1598C>A	c.(1597-1599)CCA>CAA	p.P533Q	APBB2_uc010ifu.2_Missense_Mutation_p.P105Q|APBB2_uc003gvm.2_Missense_Mutation_p.P512Q|APBB2_uc003gvn.2_Missense_Mutation_p.P534Q|APBB2_uc003gvk.2_5'UTR	NM_173075	NP_775098	Q92870	APBB2_HUMAN	amyloid beta A4 precursor protein-binding,	533	PID 1.				cell cycle arrest|intracellular signal transduction|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|regulation of transcription, DNA-dependent	growth cone|lamellipodium|membrane|nucleus|synapse	beta-amyloid binding|transcription factor binding			ovary(2)|large_intestine(1)	3						GGCTTTTGCTGGTGTGTCACA	0.423													7	77					1.26484e-09	1.67905e-08	0.000157383	1	0
PHOX2B	8929	broad.mit.edu	37	4	41748193	41748193	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:41748193C>G	uc003gwf.3	-	3	936	c.576G>C	c.(574-576)CCG>CCC	p.P192P		NM_003924	NP_003915	Q99453	PHX2B_HUMAN	paired-like homeobox 2b	192					positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			autonomic_ganglia(7)|lung(2)|ovary(2)|central_nervous_system(1)	12						CAGTGCTGTCCGGGTCAGTGC	0.537			Mis|F		neuroblastoma	neuroblastoma	congenital central hypoventilation syndrome		Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				4	71					0	0	0.00024832	0	0
KCTD8	386617	broad.mit.edu	37	4	44177177	44177177	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:44177177G>A	uc003gwu.2	-	2	1336	c.1052C>T	c.(1051-1053)TCC>TTC	p.S351F		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	351						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						CTCATTACAGGAAGTCCCACT	0.468										HNSCC(17;0.042)			12	66					0	0	0.00010058	0	0
GUF1	60558	broad.mit.edu	37	4	44688016	44688016	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:44688016A>G	uc003gww.3	+	7	917	c.710A>G	c.(709-711)CAG>CGG	p.Q237R	GUF1_uc010ifz.1_RNA	NM_021927	NP_068746	Q8N442	GUF1_HUMAN	GUF1 GTPase homolog	237					translation	mitochondrial inner membrane	GTP binding|GTPase activity			upper_aerodigestive_tract(1)	1						AGTGTTCTTCAGGCAATTATT	0.299													4	118					0	0	0.000602214	0	0
FRYL	285527	broad.mit.edu	37	4	48588657	48588657	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:48588657G>C	uc003gyh.1	-	19	2334	c.1729C>G	c.(1729-1731)CTG>GTG	p.L577V	FRYL_uc003gyk.2_Missense_Mutation_p.L577V	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	577					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						AATTCAATCAGGTCAGTTCTG	0.348													4	106					0	0	0.00024832	0	0
FRYL	285527	broad.mit.edu	37	4	48588675	48588675	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:48588675C>G	uc003gyh.1	-	19	2316	c.1711G>C	c.(1711-1713)GGT>CGT	p.G571R	FRYL_uc003gyk.2_Missense_Mutation_p.G571R	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	571					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						CTGCTCATACCGTCAGGAATC	0.338													4	99					0	0	3.59834e-05	0	0
DCUN1D4	23142	broad.mit.edu	37	4	52752797	52752797	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:52752797C>A	uc003gze.2	+	6	540	c.407C>A	c.(406-408)CCA>CAA	p.P136Q	DCUN1D4_uc003gzf.2_Missense_Mutation_p.P136Q|DCUN1D4_uc011bzn.1_Missense_Mutation_p.P76Q|DCUN1D4_uc003gzg.2_RNA|DCUN1D4_uc003gzh.2_RNA|DCUN1D4_uc011bzo.1_Missense_Mutation_p.P180Q	NM_001040402	NP_001035492	Q92564	DCNL4_HUMAN	DCN1, defective in cullin neddylation 1, domain	136	DCUN1.									ovary(2)	2			GBM - Glioblastoma multiforme(4;1.93e-11)|LUSC - Lung squamous cell carcinoma(32;0.00654)			GGTGTTGAACCAGAAAACGTG	0.328													7	61					0.000673444	0.00655963	0.000673444	1	0
SCFD2	152579	broad.mit.edu	37	4	54140046	54140046	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:54140046G>C	uc003gzu.2	-	4	1392	c.1258C>G	c.(1258-1260)CCA>GCA	p.P420A	SCFD2_uc010igm.2_Missense_Mutation_p.P420A	NM_152540	NP_689753	Q8WU76	SCFD2_HUMAN	sec1 family domain containing 2	420					protein transport|vesicle docking involved in exocytosis					ovary(2)|pancreas(1)	3			GBM - Glioblastoma multiforme(3;1.07e-26)|LUSC - Lung squamous cell carcinoma(32;0.0134)			GCAGTCTGTGGGTGTTTCAAC	0.448													4	86					0	0	3.59834e-05	0	0
CEP135	9662	broad.mit.edu	37	4	56840914	56840914	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:56840914C>A	uc003hbi.2	+	11	1486	c.1252C>A	c.(1252-1254)CGA>AGA	p.R418R	CEP135_uc003hbj.2_Silent_p.R124R	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4	418	Potential.				centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					ATTTACAGAACGACAACTTAC	0.313													4	64					3.59834e-05	0.000429	3.59834e-05	1	0
UGT2B4	7363	broad.mit.edu	37	4	70346553	70346553	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:70346553G>A	uc003hek.3	-	6	1433	c.1386C>T	c.(1384-1386)TTC>TTT	p.F462F	UGT2B4_uc011cap.1_Silent_p.F326F|UGT2B4_uc003hel.3_3'UTR	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	462					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						ATTCAATCCAGAAGACTGCTC	0.443													7	131					0	0	0.000274275	0	0
SULT1B1	27284	broad.mit.edu	37	4	70599189	70599189	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:70599189C>G	uc003hen.2	-	6	837	c.539G>C	c.(538-540)TGG>TCG	p.W180S		NM_014465	NP_055280	O43704	ST1B1_HUMAN	sulfotransferase family, cytosolic, 1B, member	180					3'-phosphoadenosine 5'-phosphosulfate metabolic process|cellular biogenic amine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|thyroid hormone metabolic process|xenobiotic metabolic process	cytosol					0						TTTCTTCCACCAGTTTTTAAC	0.323													4	136					0	0	3.59834e-05	0	0
C4orf40	401137	broad.mit.edu	37	4	71021775	71021775	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:71021775G>C	uc003hfa.3	+	3	129	c.56G>C	c.(55-57)CGG>CCG	p.R19P	C4orf40_uc003hfb.3_Missense_Mutation_p.R19P	NM_214711	NP_999876	Q6MZM9	CD040_HUMAN	hypothetical protein LOC401137 precursor	19						extracellular region					0						TTTTAGAGACGGTTCCCCTTC	0.264													4	120					0	0	8.12818e-05	0	0
MUC7	4589	broad.mit.edu	37	4	71347008	71347008	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:71347008T>C	uc011cat.1	+	4	835	c.547T>C	c.(547-549)TCA>CCA	p.S183P	MUC7_uc011cau.1_Missense_Mutation_p.S183P|MUC7_uc003hfj.2_Missense_Mutation_p.S183P|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	183	1.|Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			ACCATCTTCCTCAGCTCCACC	0.572													6	176					0	0	0.000274275	0	0
ANKRD17	26057	broad.mit.edu	37	4	73941991	73941991	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:73941991C>G	uc003hgp.2	-	34	7886	c.7769G>C	c.(7768-7770)TGG>TCG	p.W2590S	ANKRD17_uc003hgo.2_Missense_Mutation_p.W2477S|ANKRD17_uc003hgq.2_Missense_Mutation_p.W2339S|ANKRD17_uc003hgr.2_Missense_Mutation_p.W2589S	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	2590					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GTGAGGTGCCCAGGGTCCAGT	0.368													4	86					0	0	8.12818e-05	0	0
ANKRD17	26057	broad.mit.edu	37	4	73942657	73942657	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:73942657C>G	uc003hgp.2	-	33	7869	c.7752G>C	c.(7750-7752)ACG>ACC	p.T2584T	ANKRD17_uc003hgo.2_Silent_p.T2471T|ANKRD17_uc003hgq.2_Silent_p.T2333T|ANKRD17_uc003hgr.2_Silent_p.T2583T	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	2584					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TCAGCCTCACCGTTTGAGGGC	0.423													5	216					0	0	8.12818e-05	0	0
ANKRD17	26057	broad.mit.edu	37	4	73956693	73956693	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:73956693C>G	uc003hgp.2	-	29	6769	c.6652G>C	c.(6652-6654)GTC>CTC	p.V2218L	ANKRD17_uc003hgo.2_Missense_Mutation_p.V2105L|ANKRD17_uc003hgq.2_Missense_Mutation_p.V1967L|ANKRD17_uc003hgr.2_Missense_Mutation_p.V2217L	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	2218					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GGTAGCTGGACAGAAGAGGGA	0.443													4	203					0	0	0.00024832	0	0
EREG	2069	broad.mit.edu	37	4	75246760	75246760	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:75246760C>A	uc003hie.1	+	3	350	c.184C>A	c.(184-186)CAA>AAA	p.Q62K	EREG_uc003hid.2_Missense_Mutation_p.Q56K	NM_001432	NP_001423	O14944	EREG_HUMAN	epiregulin preproprotein	62	Extracellular (Potential).				angiogenesis|cell-cell signaling|cytokine-mediated signaling pathway|epidermal growth factor receptor signaling pathway|female meiosis|keratinocyte differentiation|keratinocyte proliferation|luteinizing hormone signaling pathway|mRNA transcription|negative regulation of epithelial cell proliferation|negative regulation of smooth muscle cell differentiation|negative regulation of transcription, DNA-dependent|oocyte maturation|organ morphogenesis|ovarian cumulus expansion|ovulation|positive regulation of cell division|positive regulation of cytokine production|positive regulation of DNA replication|positive regulation of epidermal growth factor receptor activity|positive regulation of fibroblast proliferation|positive regulation of innate immune response|positive regulation of interleukin-6 biosynthetic process|positive regulation of mitosis|positive regulation of phosphorylation|positive regulation of smooth muscle cell proliferation|primary follicle stage|wound healing	extracellular space|integral to plasma membrane	epidermal growth factor receptor binding|growth factor activity			breast(1)|skin(1)	2			Lung(101;0.196)			ACGTGTGGCTCAAGTGTCAAT	0.398													6	128					0.000673444	0.00655963	0.000673444	1	0
G3BP2	9908	broad.mit.edu	37	4	76582815	76582815	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:76582815G>C	uc003hir.2	-	4	442	c.277C>G	c.(277-279)CAG>GAG	p.Q93E	G3BP2_uc003his.2_Missense_Mutation_p.Q93E|G3BP2_uc003hit.2_Missense_Mutation_p.Q93E	NM_012297	NP_036429	Q9UN86	G3BP2_HUMAN	Ras-GTPase activating protein SH3 domain-binding	93	NTF2.				cytoplasmic sequestering of NF-kappaB|mRNA transport|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	GTPase activator activity|nucleotide binding|receptor signaling complex scaffold activity|RNA binding			breast(2)|central_nervous_system(1)	3			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			CCCATGACCTGGACAACTACT	0.393													4	204					0	0	3.59834e-05	0	0
SDAD1	55153	broad.mit.edu	37	4	76878723	76878723	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:76878723C>G	uc003hje.3	-	19	1836	c.1717G>C	c.(1717-1719)GGG>CGG	p.G573R	SDAD1_uc003hjf.3_Missense_Mutation_p.G476R|SDAD1_uc011cbr.1_Missense_Mutation_p.G536R	NM_018115	NP_060585	Q9NVU7	SDA1_HUMAN	SDA1 domain containing 1	573					protein transport|ribosomal large subunit biogenesis	nucleolus	protein binding			ovary(1)	1			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TGGGATTTCCCGGGGGCAGCA	0.463													4	187					0	0	8.12818e-05	0	0
ART3	419	broad.mit.edu	37	4	77033574	77033574	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:77033574C>T	uc003hjo.2	+	12	1191	c.1072C>T	c.(1072-1074)CAT>TAT	p.H358Y	ART3_uc003hjk.2_Missense_Mutation_p.H336Y|ART3_uc003hjn.2_Missense_Mutation_p.H347Y|ART3_uc003hjp.2_RNA|ART3_uc010ijb.2_RNA|ART3_uc003hjq.2_RNA|ART3_uc003hjr.2_Missense_Mutation_p.H339Y|ART3_uc010ijc.2_Missense_Mutation_p.H317Y|ART3_uc010ijd.2_Missense_Mutation_p.H317Y	NM_001130016	NP_001123488	Q13508	NAR3_HUMAN	ADP-ribosyltransferase 3 isoform a	358					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity			ovary(2)	2			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TCCCAAAAGCCATCCTTCTGC	0.418													5	106					0	0	0.000602214	0	0
FRAS1	80144	broad.mit.edu	37	4	79293906	79293906	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:79293906C>A	uc003hlb.2	+	24	3344	c.2904C>A	c.(2902-2904)CCC>CCA	p.P968P	FRAS1_uc003hkw.2_Silent_p.P968P	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	968	FU 12.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GCAGTGGGCCCCTGAAAACAG	0.507													6	98					0.000978159	0.00917326	0.000978159	1	0
FRAS1	80144	broad.mit.edu	37	4	79403057	79403057	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:79403057C>A	uc003hlb.2	+	57	8983	c.8543C>A	c.(8542-8544)CCA>CAA	p.P2848Q		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2843	Calx-beta 3.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TCTGCCACACCAGGAGTTGAC	0.537													6	90					0.000157383	0.00173811	0.000157383	1	0
PAQR3	152559	broad.mit.edu	37	4	79860262	79860262	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:79860262G>A	uc003hlp.1	-	1	321	c.117C>T	c.(115-117)TCC>TCT	p.S39S	PAQR3_uc003hlm.2_RNA|PAQR3_uc003hln.2_RNA|PAQR3_uc003hlq.1_5'UTR	NM_001040202	NP_001035292	Q6TCH7	PAQR3_HUMAN	progestin and adipoQ receptor family member III	39	Cytoplasmic (Potential).					Golgi membrane|integral to membrane	receptor activity				0						TGTCCTTGAGGGACCCGGGGA	0.637													10	76					0	0	0.000978159	0	0
GK2	2712	broad.mit.edu	37	4	80327889	80327889	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:80327889G>C	uc003hlu.2	-	1	1484	c.1466C>G	c.(1465-1467)CCA>CGA	p.P489R		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	489					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						CTGGATCTGTGGTTCAAATCG	0.517													4	164					0	0	0.000157383	0	0
RASGEF1B	153020	broad.mit.edu	37	4	82355091	82355091	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:82355091C>G	uc003hmi.1	-	12	1371	c.1227G>C	c.(1225-1227)GTG>GTC	p.V409V	RASGEF1B_uc003hmj.1_Silent_p.V408V|RASGEF1B_uc010ijq.1_Silent_p.V367V	NM_152545	NP_689758	Q0VAM2	RGF1B_HUMAN	RasGEF domain family, member 1B	409	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity				0						TAAATTCACTCACTTGTTTGG	0.378													5	252					0	0	0.000274275	0	0
TMEM150C	441027	broad.mit.edu	37	4	83411274	83411274	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:83411274G>A	uc003hmy.1	-	7	559	c.481C>T	c.(481-483)CGG>TGG	p.R161W	TMEM150C_uc011ccj.1_Missense_Mutation_p.R191W	NM_001080506	NP_001073975	B9EJG8	T150C_HUMAN	transmembrane protein 150C	161						integral to membrane				ovary(1)	1						CCAACTCTCCGTCCTTCATTC	0.468													7	100					0	0	8.12818e-05	0	0
THAP9	79725	broad.mit.edu	37	4	83839983	83839983	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:83839983G>C	uc003hnt.2	+	5	2737	c.2618G>C	c.(2617-2619)TGG>TCG	p.W873S	THAP9_uc003hns.1_Missense_Mutation_p.W729S|THAP9_uc003hnu.1_RNA|THAP9_uc003hnv.2_Missense_Mutation_p.W590S	NM_024672	NP_078948	Q9H5L6	THAP9_HUMAN	THAP domain containing 9	873							DNA binding|metal ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	5		Hepatocellular(203;0.114)				AGGAAACACTGGTCATCTGTA	0.323													6	140					0	0	0.000157383	0	0
HPSE	10855	broad.mit.edu	37	4	84240499	84240499	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:84240499G>T	uc003hoj.3	-	3	596	c.497C>A	c.(496-498)TCA>TAA	p.S166*	HPSE_uc010ika.2_Nonsense_Mutation_p.S166*|HPSE_uc011ccq.1_RNA|HPSE_uc011ccr.1_RNA|HPSE_uc011ccs.1_Silent_p.L23L|HPSE_uc011cct.1_Nonsense_Mutation_p.S166*|HPSE_uc003hok.3_Nonsense_Mutation_p.S166*	NM_001098540	NP_001092010	Q9Y251	HPSE_HUMAN	heparanase precursor	166					carbohydrate metabolic process|cell adhesion|proteoglycan metabolic process	extracellular region|lysosomal membrane|nucleus	beta-glucuronidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.114)		COAD - Colon adenocarcinoma(81;0.141)	Heparin(DB01109)	TTTCTTACTTGAGTAGGTGCT	0.468													8	158					1.5842e-08	2.08899e-07	0.000151284	1	0
WDFY3	23001	broad.mit.edu	37	4	85715845	85715845	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:85715845C>G	uc003hpd.2	-	21	3722	c.3314G>C	c.(3313-3315)TGG>TCG	p.W1105S		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1105						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		AATACAAAACCAGCTAGAGTA	0.363													4	67					0	0	3.59834e-05	0	0
ARHGAP24	83478	broad.mit.edu	37	4	86893290	86893290	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:86893290G>C	uc003hpk.2	+	6	1150	c.701G>C	c.(700-702)TGT>TCT	p.C234S	ARHGAP24_uc003hpj.2_Missense_Mutation_p.C234S|ARHGAP24_uc003hpl.2_Missense_Mutation_p.C139S|ARHGAP24_uc010ikf.2_Missense_Mutation_p.C149S|ARHGAP24_uc003hpm.2_Missense_Mutation_p.C141S	NM_001025616	NP_001020787	Q8N264	RHG24_HUMAN	Rho GTPase activating protein 24 isoform 1	234	Rho-GAP.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell projection|cytoskeleton|cytosol|focal adhesion	GTPase activator activity|protein binding				0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000571)		TTTTTGTCATGTGCCAAACTG	0.378													4	123					0	0	3.59834e-05	0	0
PTPN13	5783	broad.mit.edu	37	4	87610236	87610236	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:87610236C>A	uc003hpz.2	+	5	919	c.439C>A	c.(439-441)CGG>AGG	p.R147R	PTPN13_uc003hpy.2_Silent_p.R147R|PTPN13_uc003hqa.2_Silent_p.R147R|PTPN13_uc003hqb.2_Silent_p.R147R	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	147	KIND.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		AGTTTCTGTTCGGACTGTGCT	0.418													5	94					8.12818e-05	0.000938396	8.12818e-05	1	0
C4orf36	132989	broad.mit.edu	37	4	87812627	87812627	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:87812627C>A	uc003hqe.3	-	2	360	c.47G>T	c.(46-48)CGG>CTG	p.R16L		NM_144645	NP_653246	Q96KX1	CD036_HUMAN	hypothetical protein LOC132989	16											0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00141)		ACAACTGCCCCGCAAAATGGT	0.398													7	198					0.000673444	0.00655963	0.000673444	1	0
HSD17B13	345275	broad.mit.edu	37	4	88231451	88231451	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:88231451G>T	uc003hqo.2	-	6	819	c.756C>A	c.(754-756)ACC>ACA	p.T252T	HSD17B13_uc010ikk.2_Silent_p.T216T	NM_178135	NP_835236	Q7Z5P4	DHB13_HUMAN	hydroxysteroid (17-beta) dehydrogenase 13	252						extracellular region	binding|oxidoreductase activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.000308)		TTTTCTTATTGGTAAGTATTC	0.308													7	136					1.58986e-06	2.00859e-05	0.000673444	1	0
HSD17B13	345275	broad.mit.edu	37	4	88238266	88238266	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:88238266A>G	uc003hqo.2	-	3	491	c.428T>C	c.(427-429)GTC>GCC	p.V143A	HSD17B13_uc010ikk.2_Missense_Mutation_p.V107A	NM_178135	NP_835236	Q7Z5P4	DHB13_HUMAN	hydroxysteroid (17-beta) dehydrogenase 13	143						extracellular region	binding|oxidoreductase activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.000308)		TAGGATGTTGACCTCAAATGT	0.413													4	108					0	0	0.00024832	0	0
SPARCL1	8404	broad.mit.edu	37	4	88411452	88411453	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:88411452_88411453GG>TT	uc010ikm.2	-	8	2075_2076	c.1503_1504CC>AA	c.(1501-1506)CTCCAG>CTAAAG	p.Q502K	SPARCL1_uc011cdc.1_Missense_Mutation_p.Q377K|SPARCL1_uc003hqs.3_Missense_Mutation_p.Q502K|SPARCL1_uc011cdd.1_Missense_Mutation_p.Q377K	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	502	Kazal-like.				signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		TAATCCAGCTGGAGTTGATGCC	0.46													8	165					0	0	6.4e-05	0	0
HERC5	51191	broad.mit.edu	37	4	89393580	89393580	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:89393580C>A	uc003hrt.2	+	11	1472	c.1319C>A	c.(1318-1320)CCT>CAT	p.P440H	HERC5_uc011cdm.1_Missense_Mutation_p.P78H	NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	440					innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		GAAATGATGCCTGTTTATTTG	0.338													7	243					0.000442599	0.00445669	0.000442599	1	0
GRID2	2895	broad.mit.edu	37	4	94316791	94316791	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:94316791G>A	uc011cdt.1	+	9	1537	c.1279G>A	c.(1279-1281)GGG>AGG	p.G427R	GRID2_uc011cdu.1_Missense_Mutation_p.G332R	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	427	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	AGGTCTGAATGGGTCACTGAC	0.433													4	48					0	0	3.59834e-05	0	0
UNC5C	8633	broad.mit.edu	37	4	96137343	96137343	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:96137343G>C	uc003htp.1	-	10	1819	c.1665C>G	c.(1663-1665)CCC>CCG	p.P555P	UNC5C_uc010ilc.1_Silent_p.P574P|UNC5C_uc003htq.2_Silent_p.P574P	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	555	Cytoplasmic (Potential).|ZU5.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		TGGCCCCAGCGGGAATCAGCA	0.443													4	27					0	0	3.59834e-05	0	0
UNC5C	8633	broad.mit.edu	37	4	96163628	96163628	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:96163628C>G	uc003htp.1	-	7	1214	c.1060G>C	c.(1060-1062)GGC>CGC	p.G354R	UNC5C_uc010ilc.1_Missense_Mutation_p.G354R|UNC5C_uc003htq.2_Missense_Mutation_p.G354R	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	354	Extracellular (Potential).|TSP type-1 2.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		AAGACGAGGCCGTCGCAGTCC	0.557													4	47					0	0	0.000157383	0	0
ADH5	128	broad.mit.edu	37	4	99993813	99993813	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:99993813G>T	uc003hui.2	-	8	1091	c.1011C>A	c.(1009-1011)TCC>TCA	p.S337S	ADH5_uc003huj.2_Silent_p.S215S	NM_000671	NP_000662	P11766	ADHX_HUMAN	class III alcohol dehydrogenase, chi subunit	337					ethanol oxidation|response to redox state		alcohol dehydrogenase (NAD) activity|electron carrier activity|fatty acid binding|formaldehyde dehydrogenase activity|S-(hydroxymethyl)glutathione dehydrogenase activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;2.5e-07)	NADH(DB00157)	TTATCTTTTTGGACATATATT	0.343													9	324					0.000978159	0.00917326	0.000978159	1	0
NFKB1	4790	broad.mit.edu	37	4	103533751	103533751	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:103533751G>C	uc011ceq.1	+	22	3044	c.2577G>C	c.(2575-2577)ATG>ATC	p.M859I	NFKB1_uc011cep.1_Missense_Mutation_p.M860I|NFKB1_uc011cer.1_Missense_Mutation_p.M679I	NM_003998	NP_003989	P19838	NFKB1_HUMAN	nuclear factor kappa-B, subunit 1 isoform 1	859	Death.|Interaction with CFLAR.				anti-apoptosis|apoptosis|cellular response to mechanical stimulus|inflammatory response|innate immune response|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of calcidiol 1-monooxygenase activity|nerve growth factor receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter	cytosol|I-kappaB/NF-kappaB complex|mitochondrion|nucleoplasm	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|breast(2)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.59e-08)	Dexamethasone(DB01234)|Pranlukast(DB01411)|Thalidomide(DB01041)	AAACACTTATGGACAACTATG	0.433													4	104					0	0	0.00024832	0	0
MANBA	4126	broad.mit.edu	37	4	103592512	103592512	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:103592512T>C	uc003hwg.2	-	9	1256	c.1156A>G	c.(1156-1158)ACT>GCT	p.T386A	MANBA_uc011ces.1_Missense_Mutation_p.T329A	NM_005908	NP_005899	O00462	MANBA_HUMAN	mannosidase, beta A, lysosomal precursor	386					carbohydrate metabolic process|protein modification process	lysosome	beta-mannosidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;4.44e-08)		ACCCGAAGAGTATTCATATTA	0.348													3	83					0	0	6.4e-05	0	0
MANBA	4126	broad.mit.edu	37	4	103611860	103611860	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:103611860C>A	uc003hwg.2	-	6	842	c.742G>T	c.(742-744)GGT>TGT	p.G248C	MANBA_uc011ces.1_Missense_Mutation_p.G191C	NM_005908	NP_005899	O00462	MANBA_HUMAN	mannosidase, beta A, lysosomal precursor	248					carbohydrate metabolic process|protein modification process	lysosome	beta-mannosidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;4.44e-08)		ACTTGACCACCAACTGGCTTT	0.363													7	171					0.000978159	0.00917326	0.000978159	1	0
NHEDC2	133308	broad.mit.edu	37	4	103979102	103979102	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:103979102C>A	uc003hwx.3	-	4	1170	c.298G>T	c.(298-300)GTA>TTA	p.V100L	NHEDC2_uc010iln.1_5'UTR|NHEDC2_uc003hwy.2_Missense_Mutation_p.V100L|NHEDC2_uc011cew.1_Intron|NHEDC2_uc011cex.1_Intron|NHEDC2_uc011cey.1_Intron	NM_178833	NP_849155	Q86UD5	NHDC2_HUMAN	Na+/H+ exchanger domain containing 2	100	Helical; (Potential).				sodium ion transport	integral to membrane|mitochondrial membrane	solute:hydrogen antiporter activity				0				OV - Ovarian serous cystadenocarcinoma(123;2.3e-08)		GACCAAACTACAGCCCACAGA	0.353													6	213					5.18039e-06	6.44204e-05	0.000157383	1	0
INTS12	57117	broad.mit.edu	37	4	106603910	106603910	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:106603910G>T	uc003hxw.2	-	8	1627	c.1369C>A	c.(1369-1371)CAA>AAA	p.Q457K	INTS12_uc010ilr.2_Missense_Mutation_p.Q457K	NM_020395	NP_065128	Q96CB8	INT12_HUMAN	integrator complex subunit 12	457					snRNA processing	integrator complex	protein binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;5.12e-07)		AGTTTCTTTTGGGCAGCTTTC	0.388													6	165					1.06961e-07	1.39386e-06	0.000157383	1	0
LEF1	51176	broad.mit.edu	37	4	109088792	109088792	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:109088792G>C	uc003hyt.1	-	1	787	c.132C>G	c.(130-132)CCC>CCG	p.P44P	LEF1_uc011cfj.1_5'Flank|LEF1_uc011cfk.1_5'Flank|LEF1_uc003hyu.1_Silent_p.P44P|LEF1_uc003hyv.1_Silent_p.P44P|LEF1_uc010imb.1_RNA	NM_016269	NP_057353	Q9UJU2	LEF1_HUMAN	lymphoid enhancer-binding factor 1 isoform 1	44	CTNNB1-binding (By similarity).|Asp/Glu-rich (acidic).				canonical Wnt receptor signaling pathway|cell chemotaxis|cellular response to interleukin-4|epithelial to mesenchymal transition|histone H3 acetylation|histone H4 acetylation|negative regulation of apoptosis in bone marrow|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell-cell adhesion|negative regulation of DNA binding|negative regulation of estrogen receptor binding|negative regulation of interleukin-13 production|negative regulation of interleukin-4 production|negative regulation of interleukin-5 production|negative regulation of transcription, DNA-dependent|neutrophil differentiation|osteoblast differentiation|palate development|positive regulation by host of viral transcription|positive regulation of cell cycle process|positive regulation of cell growth|positive regulation of cell migration|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cell proliferation in bone marrow|positive regulation of cell-cell adhesion|positive regulation of epithelial to mesenchymal transition|positive regulation of granulocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|T-helper 1 cell differentiation	cytoplasm|protein-DNA complex|transcription factor complex	armadillo repeat domain binding|beta-catenin binding|C2H2 zinc finger domain binding|caspase inhibitor activity|DNA bending activity|enhancer binding|estrogen receptor activity|estrogen receptor binding|gamma-catenin binding|histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding			large_intestine(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000224)		CTTCCTCTTCGGGATGACTGA	0.597													4	116					0	0	0.00024832	0	0
CFI	3426	broad.mit.edu	37	4	110670376	110670376	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:110670376G>T	uc003hzr.3	-	10	1354	c.1146C>A	c.(1144-1146)CTC>CTA	p.L382L	CFI_uc003hzq.2_Silent_p.L179L|CFI_uc011cft.1_Silent_p.L390L|CFI_uc003hzs.3_Silent_p.L375L	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	382	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		TCTTTTACCTGAGACAATGTG	0.418													8	249					0.000978159	0.00917326	0.000978159	1	0
ALPK1	80216	broad.mit.edu	37	4	113353626	113353626	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:113353626T>C	uc003iap.3	+	11	3202	c.2923T>C	c.(2923-2925)TTG>CTG	p.L975L	ALPK1_uc003ian.3_Silent_p.L975L|ALPK1_uc011cfx.1_Silent_p.L897L|ALPK1_uc003iao.3_Intron|ALPK1_uc010imo.2_Silent_p.L803L	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	975							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		GGCTCGCACCTTGCAACCTGA	0.498													3	99					0	0	6.4e-05	0	0
C4orf21	55345	broad.mit.edu	37	4	113479318	113479318	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:113479318C>G	uc003iau.2	-	20	5319	c.5108G>C	c.(5107-5109)AGA>ACA	p.R1703T	C4orf21_uc003iav.2_RNA|C4orf21_uc003iat.2_Missense_Mutation_p.R161T	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	525						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		AAGAAGTACTCTGTCAACAGC	0.318													4	226					0	0	3.59834e-05	0	0
UGT8	7368	broad.mit.edu	37	4	115544540	115544540	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:115544540G>C	uc003ibs.2	+	2	1026	c.504G>C	c.(502-504)GTG>GTC	p.V168V	UGT8_uc003ibt.2_Silent_p.V168V|UGT8_uc011cge.1_RNA	NM_001128174	NP_001121646	Q16880	CGT_HUMAN	UDP-galactose-ceramide galactosyltransferase 8	168					central nervous system development|peripheral nervous system development	integral to membrane	2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity|UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity			ovary(1)|skin(1)	2		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000632)		CTGCTGAAGTGGGTGCTCCTG	0.448													4	89					0	0	0.00024832	0	0
METTL14	57721	broad.mit.edu	37	4	119618445	119618445	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:119618445C>G	uc003icf.2	+	7	728	c.612C>G	c.(610-612)ATC>ATG	p.I204M	METTL14_uc003icg.2_Missense_Mutation_p.I166M	NM_020961	NP_066012	Q9HCE5	MTL14_HUMAN	methyltransferase like 14	204						nucleus	mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity				0						AAACTGGCATCACTGCTAATG	0.338													3	78					0	0	0.000602214	0	0
SYNPO2	171024	broad.mit.edu	37	4	119951154	119951154	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:119951154C>G	uc003icm.3	+	4	1420	c.1224C>G	c.(1222-1224)ACC>ACG	p.T408T	SYNPO2_uc010ina.2_Silent_p.T408T|SYNPO2_uc010inb.2_Silent_p.T408T|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Silent_p.T336T	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	408						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						GGAAATACACCCTAGTTAGCT	0.522													5	165					0	0	0.000157383	0	0
USP53	54532	broad.mit.edu	37	4	120166520	120166520	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:120166520G>T	uc003ics.3	+	5	1239	c.173G>T	c.(172-174)CGA>CTA	p.R58L	USP53_uc003icr.3_Missense_Mutation_p.R58L|USP53_uc003icu.3_5'UTR	NM_019050	NP_061923	Q70EK8	UBP53_HUMAN	ubiquitin specific protease 53	58					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			ovary(1)|breast(1)|kidney(1)|skin(1)	4						ATATTCCGACGAAGCTTGCGG	0.338													5	136					5.18039e-06	6.44204e-05	0.000157383	1	0
PRDM5	11107	broad.mit.edu	37	4	121631501	121631501	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:121631501T>C	uc003idn.2	-	15	1941	c.1691A>G	c.(1690-1692)AAG>AGG	p.K564R	PRDM5_uc003ido.2_Missense_Mutation_p.K533R|PRDM5_uc010ine.2_3'UTR	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	564	C2H2-type 14.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						GTGCGTCCTCTTGTGCTCATC	0.458													5	34					0	0	0.000602214	0	0
TNIP3	79931	broad.mit.edu	37	4	122078273	122078273	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:122078273G>C	uc010ing.2	-	4	535	c.339C>G	c.(337-339)ACC>ACG	p.T113T	TNIP3_uc010inh.2_Silent_p.T113T|TNIP3_uc011cgj.1_Silent_p.T171T|TNIP3_uc010ini.2_Silent_p.T113T	NM_024873	NP_079149	Q96KP6	TNIP3_HUMAN	TNFAIP3 interacting protein 3	113	Potential.									ovary(1)	1						GCCGGTCCCGGGTCAGGTCGC	0.642													4	180					0	0	0.00024832	0	0
KIAA1109	84162	broad.mit.edu	37	4	123097015	123097015	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:123097015G>T	uc003ieh.2	+	4	349	c.304G>T	c.(304-306)GGA>TGA	p.G102*		NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	102					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						GATTCAAGATGGATTCATCAT	0.284													6	71					0.000157383	0.00173811	0.000157383	1	0
KIAA1109	84162	broad.mit.edu	37	4	123128703	123128703	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:123128703G>C	uc003ieh.2	+	15	1707	c.1662G>C	c.(1660-1662)CTG>CTC	p.L554L	KIAA1109_uc003iei.1_Silent_p.L308L|KIAA1109_uc010ins.1_5'UTR|KIAA1109_uc003iej.1_5'Flank	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	554					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TAGTGTATCTGGCAGCCTGTG	0.269													5	81					0	0	3.59834e-05	0	0
KIAA1109	84162	broad.mit.edu	37	4	123201109	123201109	+	Nonsense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:123201109C>G	uc003ieh.2	+	49	8816	c.8771C>G	c.(8770-8772)TCA>TGA	p.S2924*	KIAA1109_uc003iel.1_Nonsense_Mutation_p.S859*	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	2924					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						AAACAAATCTCAGACCTAATC	0.393													4	117					0	0	3.59834e-05	0	0
ANKRD50	57182	broad.mit.edu	37	4	125590177	125590177	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:125590177G>C	uc003ifg.3	-	3	4521	c.4255C>G	c.(4255-4257)CCT>GCT	p.P1419A	ANKRD50_uc011cgo.1_Missense_Mutation_p.P1240A|ANKRD50_uc010inw.2_Missense_Mutation_p.P1419A	NM_020337	NP_065070	Q9ULJ7	ANR50_HUMAN	ankyrin repeat domain 50	1419										central_nervous_system(1)	1						TTGAAGCTAGGGTCAGAACCT	0.333													4	55					0	0	3.59834e-05	0	0
FAT4	79633	broad.mit.edu	37	4	126370308	126370308	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:126370308G>A	uc003ifj.3	+	9	8137	c.8137G>A	c.(8137-8139)GAA>AAA	p.E2713K	FAT4_uc011cgp.1_Missense_Mutation_p.E1011K|FAT4_uc003ifi.1_Missense_Mutation_p.E191K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2713	Cadherin 26.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGGCAACATGGAAAATAGTTT	0.378													6	94					0	0	3.59834e-05	0	0
MFSD8	256471	broad.mit.edu	37	4	128842793	128842793	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:128842793C>G	uc003ifp.2	-	12	1399	c.1236G>C	c.(1234-1236)CCG>CCC	p.P412P	MFSD8_uc011cgu.1_Silent_p.P367P|MFSD8_uc011cgv.1_3'UTR	NM_152778	NP_689991	Q8NHS3	MFSD8_HUMAN	major facilitator superfamily domain containing	412	Extracellular (Potential).				cell death|transmembrane transport	integral to membrane|lysosomal membrane				ovary(1)|liver(1)	2						GATGAATCACCGGGGTGTAGA	0.423													4	69					0	0	0.00024832	0	0
LARP1B	55132	broad.mit.edu	37	4	129127673	129127673	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:129127673C>A	uc003iga.2	+	18	2531	c.2400C>A	c.(2398-2400)ACC>ACA	p.T800T	LARP1B_uc003igc.2_Silent_p.T219T|LARP1B_uc010ioa.1_RNA|LARP1B_uc003ige.2_Intron|LARP1B_uc003igd.2_RNA|LARP1B_uc003igf.2_Intron	NM_018078	NP_060548	Q659C4	LAR1B_HUMAN	La ribonucleoprotein domain family member 2	800							RNA binding				0						AAGAAGAAACCAAAAAAGACT	0.338													6	144					0.000157383	0.00173811	0.000157383	1	0
PCDH18	54510	broad.mit.edu	37	4	138442438	138442438	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:138442438C>T	uc003ihe.3	-	4	3540	c.3153G>A	c.(3151-3153)CAG>CAA	p.Q1051Q	PCDH18_uc003ihf.3_Silent_p.Q1043Q|PCDH18_uc011cgz.1_Silent_p.Q262Q|PCDH18_uc003ihg.3_Silent_p.Q830Q|PCDH18_uc011cha.1_Silent_p.Q231Q	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	1051	Interaction with DAB1 (By similarity).|Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					CCGCTACCCCCTGTGGGTAAC	0.562													10	50					0	0	0.000673444	0	0
UCP1	7350	broad.mit.edu	37	4	141489069	141489069	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:141489069G>C	uc011chj.1	-	2	265	c.189C>G	c.(187-189)ACC>ACG	p.T63T	UCP1_uc011chk.1_Silent_p.T63T	NM_021833	NP_068605	P25874	UCP1_HUMAN	uncoupling protein 1	63	Solcar 1.				brown fat cell differentiation|cellular lipid metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial inner membrane	binding			ovary(1)	1	all_hematologic(180;0.162)					TTACCACAGCGGTGATTGTTC	0.537													4	114					0	0	0.000157383	0	0
TBC1D9	23158	broad.mit.edu	37	4	141591977	141591977	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:141591977C>G	uc010ioj.2	-	7	1435	c.1163G>C	c.(1162-1164)AGA>ACA	p.R388T		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	388						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				TAGAAAGTCTCTATCTTTCAA	0.438													6	150					0	0	3.59834e-05	0	0
GYPA	2993	broad.mit.edu	37	4	145038021	145038021	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:145038021G>A	uc003ijo.3	-	5	459	c.343C>T	c.(343-345)CGC>TGC	p.R115C	GYPA_uc003ijn.2_Intron|GYPA_uc011cia.1_RNA|GYPA_uc011cib.1_Missense_Mutation_p.R82C|GYPA_uc003ijp.3_Missense_Mutation_p.R83C|GYPA_uc010ioq.2_Missense_Mutation_p.R102C|GYPA_uc010ior.2_Missense_Mutation_p.R50C|GYPA_uc010ios.1_RNA	NM_002099	NP_002090	P02724	GLPA_HUMAN	glycophorin A precursor	115	Cytoplasmic.				interspecies interaction between organisms	membrane fraction	receptor activity			central_nervous_system(2)	2	all_hematologic(180;0.15)					ATCAGTCGGCGAATACCGTAA	0.368													8	133					0	0	0.000673444	0	0
ABCE1	6059	broad.mit.edu	37	4	146026806	146026806	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:146026806C>A	uc003ijx.2	+	3	593	c.153C>A	c.(151-153)TCC>TCA	p.S51S	ABCE1_uc003ijy.2_Silent_p.S51S|ABCE1_uc010iot.2_RNA	NM_001040876	NP_001035809	P61221	ABCE1_HUMAN	ATP-binding cassette, sub-family E, member 1	51	4Fe-4S ferredoxin-type 2.				interspecies interaction between organisms|response to virus|RNA catabolic process	mitochondrion	ATP binding|ATPase activity|electron carrier activity|iron-sulfur cluster binding|ribonuclease inhibitor activity			skin(1)	1	all_hematologic(180;0.151)					CATGGATTTCCGAAACTCTTT	0.318													5	114					8.12818e-05	0.000938396	8.12818e-05	1	0
NR3C2	4306	broad.mit.edu	37	4	149075853	149075853	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:149075853G>T	uc003ilj.3	-	5	2548	c.2214C>A	c.(2212-2214)CCC>CCA	p.P738P	NR3C2_uc003ilk.3_Intron|NR3C2_uc010iph.2_Intron	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	738	Steroid-binding.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	GGACCATAACGGGGGAAGGTG	0.502													7	178					0.000442599	0.00445669	0.000442599	1	0
NR3C2	4306	broad.mit.edu	37	4	149115944	149115944	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:149115944G>C	uc003ilj.3	-	4	2301	c.1967C>G	c.(1966-1968)CCT>CGT	p.P656R	NR3C2_uc003ilk.3_Missense_Mutation_p.P656R|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	656	NR C4-type.|Nuclear receptor.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	TCTGCAAGCAGGACAATTCTT	0.303													4	178					0	0	3.59834e-05	0	0
LRBA	987	broad.mit.edu	37	4	151509204	151509205	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:151509204_151509205GG>TT	uc010ipj.2	-	41	6832_6833	c.6358_6359CC>AA	c.(6358-6360)CCC>AAC	p.P2120N	LRBA_uc003ilt.3_Missense_Mutation_p.P768N|LRBA_uc003ilu.3_Missense_Mutation_p.P2109N	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2120						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					TCTCACCTTGGGGTCGATTTTT	0.446													7	202					0	0	6.4e-05	0	0
PRSS48	345062	broad.mit.edu	37	4	152212465	152212465	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:152212465C>G	uc011cif.1	+	5	847	c.847C>G	c.(847-849)CTA>GTA	p.L283V	PRSS48_uc011cig.1_Missense_Mutation_p.L140V	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	283					proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						CCCTATTGTCCTACTCTCTCT	0.458													4	146					0	0	0.000157383	0	0
KIAA0922	23240	broad.mit.edu	37	4	154541932	154541932	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:154541932A>C	uc003inm.3	+	27	3641	c.3589A>C	c.(3589-3591)AAG>CAG	p.K1197Q	KIAA0922_uc010ipp.2_Missense_Mutation_p.K1198Q|KIAA0922_uc010ipq.2_Missense_Mutation_p.K966Q	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	1197	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				TAGGAAGAAAAAGCTTCAGGA	0.303													15	129					0	0	0.000219431	0	0
DCHS2	54798	broad.mit.edu	37	4	155157769	155157769	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:155157769G>C	uc003inw.2	-	25	6670	c.6670C>G	c.(6670-6672)CCT>GCT	p.P2224A		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2224	Cadherin 20.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		CTCCCTAGAGGGGTGCTTTCC	0.468													4	68					0	0	0.00024832	0	0
NPY5R	4889	broad.mit.edu	37	4	164272154	164272154	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:164272154C>A	uc003iqn.2	+	4	911	c.729C>A	c.(727-729)TCC>TCA	p.S243S		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	243	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				GTGGATTGTCCAACAAAGAAA	0.383													7	144					0.000442599	0.00445669	0.000442599	1	0
TKTL2	84076	broad.mit.edu	37	4	164393517	164393517	+	Missense_Mutation	SNP	G	C	C	rs145423814		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:164393517G>C	uc003iqp.3	-	1	1531	c.1370C>G	c.(1369-1371)TCG>TGG	p.S457W		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	457						cytoplasm	metal ion binding|transketolase activity	p.S457L(1)		ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				ATGCTCTGTCGAGATGGCATC	0.463													4	160					0	0	3.59834e-05	0	0
CPE	1363	broad.mit.edu	37	4	166388881	166388881	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:166388881C>T	uc003irg.3	+	3	823	c.546C>T	c.(544-546)GCC>GCT	p.A182A		NM_001873	NP_001864	P16870	CBPE_HUMAN	carboxypeptidase E preproprotein	182					cardiac left ventricle morphogenesis|neuropeptide signaling pathway|protein modification process	extracellular region|nucleus|plasma membrane	metallocarboxypeptidase activity|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0962)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.137)	Glucagon recombinant(DB00040)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GAAGCAATGCCCAGGGAATAG	0.378													8	43					0	0	0.000157383	0	0
SPOCK3	50859	broad.mit.edu	37	4	167675875	167675875	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:167675875C>T	uc003iri.1	-	9	865	c.724G>A	c.(724-726)GAT>AAT	p.D242N	SPOCK3_uc011cjp.1_Missense_Mutation_p.D199N|SPOCK3_uc011cjq.1_Missense_Mutation_p.D251N|SPOCK3_uc011cjr.1_Missense_Mutation_p.D122N|SPOCK3_uc003irj.1_Missense_Mutation_p.D239N|SPOCK3_uc011cjs.1_Missense_Mutation_p.D191N|SPOCK3_uc011cjt.1_Missense_Mutation_p.D150N|SPOCK3_uc011cju.1_Missense_Mutation_p.D135N|SPOCK3_uc011cjv.1_Missense_Mutation_p.D144N|SPOCK3_uc003irk.3_Missense_Mutation_p.D239N	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	242					signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		ATGCTGGTATCGAATCCTAAA	0.388													6	37					0	0	3.59834e-05	0	0
DDX60	55601	broad.mit.edu	37	4	169158938	169158938	+	Silent	SNP	T	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:169158938T>G	uc003irp.2	-	31	4465	c.4173A>C	c.(4171-4173)TCA>TCC	p.S1391S		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1391							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		GCTTTAGCACTGATAGCACCT	0.328													3	39					0	0	6.4e-05	0	0
NEK1	4750	broad.mit.edu	37	4	170523180	170523180	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:170523180G>C	uc003isb.1	-	3	685	c.193C>G	c.(193-195)CAG>GAG	p.Q65E	NEK1_uc003isc.1_Missense_Mutation_p.Q65E|NEK1_uc003isd.1_Missense_Mutation_p.Q65E|NEK1_uc003ise.1_Missense_Mutation_p.Q65E|NEK1_uc003isf.1_Missense_Mutation_p.Q65E|NEK1_uc003isg.1_5'Flank	NM_012224	NP_036356	Q96PY6	NEK1_HUMAN	NIMA-related kinase 1	65	Protein kinase.				cell division|cilium assembly|mitosis	nucleus|pericentriolar material	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(3)|ovary(2)|large_intestine(1)	6		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)|KIRC - Kidney renal clear cell carcinoma(143;0.0325)|Kidney(143;0.0385)|LUSC - Lung squamous cell carcinoma(193;0.14)		TCTCTATACTGGACAATATTT	0.318													10	239					0	0	0.000566183	0	0
CLDN22	53842	broad.mit.edu	37	4	184240727	184240727	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:184240727G>T	uc010isa.1	-	1	1201	c.645C>A	c.(643-645)AAC>AAA	p.N215K	WWC2_uc010irx.2_3'UTR|WWC2_uc003ivk.3_3'UTR|WWC2_uc003ivl.3_RNA|WWC2_uc010iry.2_3'UTR|WWC2_uc003ivn.3_3'UTR|WWC2_uc010irz.2_3'UTR|WWC2_uc003ivo.3_3'UTR	NM_001111319	NP_001104789	Q8N7P3	CLD22_HUMAN	claudin 22	215	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0		all_lung(41;6.9e-12)|Lung NSC(41;1.28e-11)|Colorectal(36;0.0172)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)|Esophageal squamous(56;0.176)		all cancers(43;4.1e-26)|Epithelial(43;6.45e-22)|OV - Ovarian serous cystadenocarcinoma(60;7.64e-10)|Colorectal(24;5.87e-06)|GBM - Glioblastoma multiforme(59;6.5e-06)|STAD - Stomach adenocarcinoma(60;2.09e-05)|COAD - Colon adenocarcinoma(29;5.15e-05)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		TCAGGTTGGTGTTTCTCGTCT	0.532													6	229					0.000673444	0.00655963	0.000673444	1	0
CASP3	836	broad.mit.edu	37	4	185552996	185552996	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:185552996G>T	uc003iwh.2	-	6	669	c.406C>A	c.(406-408)CTG>ATG	p.L136M	CASP3_uc003iwg.2_Missense_Mutation_p.L136M|CASP3_uc003iwi.2_Missense_Mutation_p.L136M	NM_004346	NP_004337	P42574	CASP3_HUMAN	caspase 3 preproprotein	136					activation of caspase activity by cytochrome c|DNA fragmentation involved in apoptotic nuclear change|negative regulation of apoptosis|nerve growth factor receptor signaling pathway|nuclear fragmentation involved in apoptotic nuclear change|proteolysis|response to tumor necrosis factor	cytosol|mitochondrion|nucleoplasm|plasma membrane	cysteine-type endopeptidase activity|protein binding			kidney(1)	1		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Colorectal(36;0.00139)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.057)|all_hematologic(60;0.0592)		all cancers(43;2.05e-27)|Epithelial(43;4.27e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.04e-11)|Colorectal(24;2e-05)|STAD - Stomach adenocarcinoma(60;2.35e-05)|GBM - Glioblastoma multiforme(59;4.94e-05)|COAD - Colon adenocarcinoma(29;0.00017)|BRCA - Breast invasive adenocarcinoma(30;0.000218)|LUSC - Lung squamous cell carcinoma(40;0.00904)|READ - Rectum adenocarcinoma(43;0.161)	Melatonin(DB01065)|Minocycline(DB01017)|Simvastatin(DB00641)	ATTTTTTTCAGGTCAACAGGT	0.363													10	228					0.000978159	0.00917326	0.000978159	1	0
CCDC111	201973	broad.mit.edu	37	4	185606819	185606819	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:185606819C>A	uc003iwk.2	+	11	1709	c.1276C>A	c.(1276-1278)CAT>AAT	p.H426N	CCDC111_uc003iwj.2_Missense_Mutation_p.H425N|CCDC111_uc003iwl.2_Missense_Mutation_p.H426N|CCDC111_uc003iwm.2_Missense_Mutation_p.H297N|CCDC111_uc003iwn.2_Missense_Mutation_p.H166N	NM_152683	NP_689896	Q96LW4	CC111_HUMAN	coiled-coil domain containing 111	426					DNA replication, synthesis of RNA primer		DNA primase activity			central_nervous_system(1)	1		all_lung(41;9.65e-12)|Lung NSC(41;1.64e-11)|Colorectal(36;0.00531)|Hepatocellular(41;0.00932)|Renal(120;0.0246)|Prostate(90;0.0283)|all_hematologic(60;0.0749)|all_neural(102;0.131)		all cancers(43;5.84e-27)|Epithelial(43;2.2e-23)|OV - Ovarian serous cystadenocarcinoma(60;4.28e-11)|STAD - Stomach adenocarcinoma(60;2.66e-05)|GBM - Glioblastoma multiforme(59;3.03e-05)|Colorectal(24;7.57e-05)|BRCA - Breast invasive adenocarcinoma(30;0.000249)|COAD - Colon adenocarcinoma(29;0.000502)|LUSC - Lung squamous cell carcinoma(40;0.00995)|READ - Rectum adenocarcinoma(43;0.173)		TGGAAGAGCCCATAAGAGTAA	0.264													10	161					6.40141e-05	0.00075092	0.000978159	1	0
SNX25	83891	broad.mit.edu	37	4	186274691	186274691	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:186274691G>T	uc003ixh.2	+	15	2216	c.2027G>T	c.(2026-2028)GGG>GTG	p.G676V	SNX25_uc010ish.2_Missense_Mutation_p.G392V|SNX25_uc003ixi.2_Missense_Mutation_p.G180V	NM_031953	NP_114159	Q9H3E2	SNX25_HUMAN	sorting nexin 25	676					cell communication|protein transport	endosome membrane	phosphatidylinositol binding|signal transducer activity			ovary(2)|breast(2)|pancreas(1)	5		all_lung(41;1.03e-13)|Lung NSC(41;2.5e-13)|Hepatocellular(41;0.00826)|Colorectal(36;0.00886)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0592)|all_neural(102;0.243)		all cancers(43;2.13e-24)|Epithelial(43;6.15e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.6e-11)|BRCA - Breast invasive adenocarcinoma(30;0.00013)|Colorectal(24;0.000165)|GBM - Glioblastoma multiforme(59;0.000357)|COAD - Colon adenocarcinoma(29;0.000887)|STAD - Stomach adenocarcinoma(60;0.00118)|LUSC - Lung squamous cell carcinoma(40;0.0129)|READ - Rectum adenocarcinoma(43;0.228)		GATGTGGATGGGAGGAAAGAC	0.418													7	158					0.000157383	0.00173811	0.000157383	1	0
CYP4V2	285440	broad.mit.edu	37	4	187118705	187118705	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:187118705A>G	uc003iyw.3	+	5	927	c.623A>G	c.(622-624)AAT>AGT	p.N208S		NM_207352	NP_997235	Q6ZWL3	CP4V2_HUMAN	cytochrome P450, family 4, subfamily v,	208					response to stimulus|visual perception	endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.33e-10)|BRCA - Breast invasive adenocarcinoma(30;3.84e-05)|GBM - Glioblastoma multiforme(59;0.000132)|STAD - Stomach adenocarcinoma(60;0.000293)|LUSC - Lung squamous cell carcinoma(40;0.00242)|READ - Rectum adenocarcinoma(43;0.17)		ATGGGGAAGAATATTGGTGCT	0.363													3	96					0	0	6.4e-05	0	0
F11	2160	broad.mit.edu	37	4	187207578	187207578	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:187207578G>T	uc003iza.1	+	13	1823	c.1490G>T	c.(1489-1491)CGA>CTA	p.R497L	uc003izb.1_Intron	NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	497	Peptidase S1.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	GATTCTCAACGACCCATATGC	0.368													6	252					0.000673444	0.00655963	0.000673444	1	0
FAT1	2195	broad.mit.edu	37	4	187629589	187629589	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:187629589G>T	uc003izf.2	-	2	1581	c.1393C>A	c.(1393-1395)CAG>AAG	p.Q465K	FAT1_uc010iso.1_Missense_Mutation_p.Q465K	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	465	Extracellular (Potential).|Cadherin 4.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TACGCTGTCTGGGTAAATTCA	0.478										HNSCC(5;0.00058)			8	158					2.80697e-09	3.71907e-08	0.000978159	1	0
FAT1	2195	broad.mit.edu	37	4	187630587	187630587	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:187630587C>G	uc003izf.2	-	2	583	c.395G>C	c.(394-396)CGA>CCA	p.R132P	FAT1_uc010iso.1_Missense_Mutation_p.R132P	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	132	Extracellular (Potential).|Cadherin 1.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GACCTTTGTTCGCGCCTCCAC	0.418										HNSCC(5;0.00058)			4	224					0	0	0.00024832	0	0
FAT1	2195	broad.mit.edu	37	4	187630712	187630712	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:187630712G>C	uc003izf.2	-	2	458	c.270C>G	c.(268-270)CTC>CTG	p.L90L	FAT1_uc010iso.1_Silent_p.L90L	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	90	Extracellular (Potential).|Cadherin 1.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						AAAAGTCTCCGAGAATGTACT	0.393										HNSCC(5;0.00058)			4	128					0	0	0.000157383	0	0
TRIML1	339976	broad.mit.edu	37	4	189068456	189068456	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:189068456C>T	uc003izm.1	+	6	1452	c.1337C>T	c.(1336-1338)TCC>TTC	p.S446F	TRIML1_uc003izn.1_Missense_Mutation_p.S170F	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	446	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		CCTATCTTTTCCCCCTGCCTC	0.562													22	108					0	0	0.000586117	0	0
TUBB4Q	56604	broad.mit.edu	37	4	190903700	190903700	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:190903700G>T	uc011clg.1	-	4	1283	c.1280C>A	c.(1279-1281)ACG>AAG	p.T427K		NM_020040	NP_064424	Q99867	TBB4Q_HUMAN	tubulin, beta polypeptide 4, member Q	428					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;4.1e-31)|Epithelial(3;1.44e-30)|OV - Ovarian serous cystadenocarcinoma(60;2.03e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00839)|READ - Rectum adenocarcinoma(43;0.155)		TCCCTCGGCCGTGGCATCCTG	0.532													6	250					1.12685e-05	0.000138146	0.000274275	1	0
LRRC14B	389257	broad.mit.edu	37	5	195314	195314	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:195314G>C	uc003jal.1	+	2	1419	c.1391G>C	c.(1390-1392)CGG>CCG	p.R464P		NM_001080478	NP_001073947	A6NHZ5	LR14B_HUMAN	leucine rich repeat containing 14B	464										skin(1)	1						GTGCTGCTGCGGGCTGACCGA	0.562													6	139					0	0	0.000157383	0	0
AHRR	57491	broad.mit.edu	37	5	354006	354006	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:354006G>C	uc003jav.2	+	3	280	c.236G>C	c.(235-237)CGG>CCG	p.R79P	AHRR_uc003jaw.2_Missense_Mutation_p.R75P|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Missense_Mutation_p.R75P	NM_020731	NP_065782	A9YTQ3	AHRR_HUMAN	arylhydrocarbon receptor repressor	79	Helix-loop-helix motif.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			breast(2)	2			Epithelial(17;0.0011)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00354)|Lung(60;0.0863)			AGTTACCTCCGGGTGAAGAGC	0.597													5	92					0	0	8.12818e-05	0	0
TRIP13	9319	broad.mit.edu	37	5	914637	914637	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:914637G>T	uc003jbr.2	+	11	1188	c.1078G>T	c.(1078-1080)GGC>TGC	p.G360C		NM_004237	NP_004228	Q15645	PCH2_HUMAN	thyroid hormone receptor interactor 13	360					double-strand break repair|reciprocal meiotic recombination|synaptonemal complex assembly|transcription from RNA polymerase II promoter		ATP binding|identical protein binding|nucleoside-triphosphatase activity|transcription cofactor activity				0			Epithelial(17;0.00147)|OV - Ovarian serous cystadenocarcinoma(19;0.00271)|all cancers(22;0.00622)|Lung(60;0.165)			AGAGATGATTGGCTTCATTGA	0.448													11	445					7.93312e-07	1.01146e-05	0.000219431	1	0
PAPD7	11044	broad.mit.edu	37	5	6748698	6748698	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:6748698C>A	uc003jdx.1	+	8	960	c.831C>A	c.(829-831)GCC>GCA	p.A277A	PAPD7_uc011cmn.1_Silent_p.A268A|PAPD7_uc010itl.1_Silent_p.A97A	NM_006999	NP_008930	Q5XG87	PAPD7_HUMAN	DNA polymerase sigma	277					cell division|DNA replication|double-strand break repair|mitotic chromosome condensation|response to drug|sister chromatid cohesion	nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|SMC protein binding			ovary(1)	1						ACAGAGACGCCGAAAGGTAAT	0.522													8	164					0.000978159	0.00917326	0.000978159	1	0
FASTKD3	79072	broad.mit.edu	37	5	7867440	7867440	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:7867440G>C	uc003jeb.2	-	2	894	c.757C>G	c.(757-759)CCG>GCG	p.P253A	FASTKD3_uc011cmp.1_5'UTR|FASTKD3_uc003jec.2_Intron|MTRR_uc010itn.1_5'Flank|MTRR_uc003jee.3_5'Flank|MTRR_uc003jed.2_5'Flank|MTRR_uc003jef.3_5'Flank|MTRR_uc003jeg.3_5'Flank|MTRR_uc010ito.2_5'Flank	NM_024091	NP_076996	Q14CZ7	FAKD3_HUMAN	FAST kinase domains 3	253					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(2)|breast(1)|pancreas(1)	4						ATATCCTCCGGGGTAAATGTT	0.363													5	170					0	0	0.000602214	0	0
CCT5	22948	broad.mit.edu	37	5	10260916	10260916	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:10260916G>T	uc003jeq.2	+	7	1057	c.886G>T	c.(886-888)GGT>TGT	p.G296C	CCT5_uc011cmq.1_Missense_Mutation_p.G143C|CCT5_uc003jer.2_Missense_Mutation_p.G296C|CCT5_uc010its.2_Missense_Mutation_p.G296C|CCT5_uc011cmr.1_Missense_Mutation_p.G241C|CCT5_uc011cms.1_Missense_Mutation_p.G258C|CCT5_uc011cmt.1_Missense_Mutation_p.G203C	NM_012073	NP_036205	P48643	TCPE_HUMAN	chaperonin containing TCP1, subunit 5 (epsilon)	296					'de novo' posttranslational protein folding|response to virus	microtubule organizing center|nucleolus	ATP binding|unfolded protein binding			ovary(2)	2						TAAAGAGACTGGTGCTAACCT	0.423													11	227					9.31168e-06	0.000114714	0.000151284	1	0
MARCH6	10299	broad.mit.edu	37	5	10381935	10381936	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:10381935_10381936CG>AT	uc003jet.1	+	4	397_398	c.214_215CG>AT	c.(214-216)CGG>ATG	p.R72M	MARCH6_uc011cmu.1_Intron|MARCH6_uc003jeu.1_Translation_Start_Site|MARCH6_uc011cmv.1_Intron	NM_005885	NP_005876	O60337	MARH6_HUMAN	membrane-associated ring finger (C3HC4) 6	72	Cytoplasmic (Potential).				protein K48-linked ubiquitination	integral to endoplasmic reticulum membrane	ubiquitin conjugating enzyme binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|breast(1)	2						TATGCCTTCACGGCTTCCAATT	0.347													6	265					0	0	6.4e-05	0	0
DNAH5	1767	broad.mit.edu	37	5	13700897	13700897	+	Silent	SNP	A	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:13700897A>T	uc003jfd.2	-	78	13617	c.13575T>A	c.(13573-13575)ATT>ATA	p.I4525I	DNAH5_uc003jfc.2_Silent_p.I693I	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4525					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GAGGGGCAGAAATGTCGTCCT	0.468									Kartagener_syndrome				14	119					0	0	0.000151284	0	0
DNAH5	1767	broad.mit.edu	37	5	13736003	13736003	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:13736003C>A	uc003jfd.2	-	67	11536	c.11494G>T	c.(11494-11496)GAG>TAG	p.E3832*	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3832					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AAGCGCATCTCAGTAATGAGG	0.483									Kartagener_syndrome				7	124					1.12685e-05	0.000138146	0.000274275	1	0
DNAH5	1767	broad.mit.edu	37	5	13931263	13931263	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:13931263G>C	uc003jfd.2	-	2	190	c.148C>G	c.(148-150)CTG>GTG	p.L50V	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	50	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTTTTGTTCAGGTCCAAACAG	0.468									Kartagener_syndrome				6	96					0	0	3.59834e-05	0	0
ANKH	56172	broad.mit.edu	37	5	14711354	14711356	+	Missense_Mutation	TNP	CGG	ATT	ATT	rs151281757	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:14711354_14711356CGG>ATT	uc003jfm.3	-	12	1760_1762	c.1429_1431CCG>AAT	c.(1429-1431)CCG>AAT	p.P477N	ANKH_uc003jfl.3_Missense_Mutation_p.P190N	NM_054027	NP_473368	Q9HCJ1	ANKH_HUMAN	progressive ankylosis protein	477	Cytoplasmic (Potential).				locomotory behavior|regulation of bone mineralization|skeletal system development	integral to plasma membrane|outer membrane	inorganic diphosphate transmembrane transporter activity|inorganic phosphate transmembrane transporter activity			upper_aerodigestive_tract(1)	1						CCTCCTCTGTCGGAGGCATGTCT	0.537													7	281					0	0	6.4e-05	0	0
ANKH	56172	broad.mit.edu	37	5	14751235	14751235	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:14751235C>G	uc003jfm.3	-	5	961	c.630G>C	c.(628-630)CTG>CTC	p.L210L		NM_054027	NP_473368	Q9HCJ1	ANKH_HUMAN	progressive ankylosis protein	210	Helical; (Potential).				locomotory behavior|regulation of bone mineralization|skeletal system development	integral to plasma membrane|outer membrane	inorganic diphosphate transmembrane transporter activity|inorganic phosphate transmembrane transporter activity			upper_aerodigestive_tract(1)	1						TGTAGTAGCCCAGGCACAGGG	0.572													4	75					0	0	0.000274275	0	0
PDZD2	23037	broad.mit.edu	37	5	32061112	32061112	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:32061112G>C	uc003jhl.2	+	14	2711	c.2323G>C	c.(2323-2325)GGG>CGG	p.G775R	PDZD2_uc003jhm.2_Missense_Mutation_p.G775R|PDZD2_uc011cnx.1_Missense_Mutation_p.G601R	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	775	PDZ 4.				cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CCCTAGCCGCGGGGATCAAAT	0.493													4	72					0	0	0.000602214	0	0
MTMR12	54545	broad.mit.edu	37	5	32271028	32271028	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:32271028G>C	uc003jhq.2	-	5	554	c.384C>G	c.(382-384)CTC>CTG	p.L128L	MTMR12_uc010iuk.2_Silent_p.L128L|MTMR12_uc010iul.2_Silent_p.L128L	NM_001040446	NP_001035536	Q9C0I1	MTMRC_HUMAN	myotubularin related protein 12	128						cytoplasm	phosphatase activity			ovary(1)	1						GTTGTCCAAAGAGAGTTTTCT	0.388													4	106					0	0	0.00024832	0	0
ZFR	51663	broad.mit.edu	37	5	32420075	32420075	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:32420075T>C	uc003jhr.1	-	3	351	c.271A>G	c.(271-273)AGG>GGG	p.R91G	ZFR_uc010iun.1_Missense_Mutation_p.R91G	NM_016107	NP_057191	Q96KR1	ZFR_HUMAN	zinc finger RNA binding protein	91	Ala-rich.				multicellular organismal development	chromosome|cytoplasm|nucleus	DNA binding|RNA binding|zinc ion binding				0				STAD - Stomach adenocarcinoma(35;0.19)		GGAGCAGGCCTGGCAACTGCA	0.547													4	97					0	0	0.00024832	0	0
TARS	6897	broad.mit.edu	37	5	33467028	33467028	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:33467028C>G	uc003jhy.2	+	18	2256	c.1961C>G	c.(1960-1962)CCA>CGA	p.P654R	TARS_uc011cob.1_Missense_Mutation_p.P642R|TARS_uc010iup.1_Missense_Mutation_p.P595R|TARS_uc011coc.1_Missense_Mutation_p.P675R|TARS_uc003jhz.2_Missense_Mutation_p.P550R|TARS_uc011cod.1_Missense_Mutation_p.P533R	NM_152295	NP_689508	P26639	SYTC_HUMAN	threonyl-tRNA synthetase	654					threonyl-tRNA aminoacylation	cytosol	ATP binding|protein homodimerization activity|threonine-tRNA ligase activity			ovary(2)	2					L-Threonine(DB00156)	GATCTGGATCCAGGCTGTACA	0.353													4	109					0	0	3.59834e-05	0	0
RAI14	26064	broad.mit.edu	37	5	34811144	34811144	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:34811144G>T	uc003jir.2	+	8	674	c.478G>T	c.(478-480)GTA>TTA	p.V160L	RAI14_uc010iur.2_Missense_Mutation_p.V160L|RAI14_uc011coj.1_Missense_Mutation_p.V160L|RAI14_uc010ius.1_Missense_Mutation_p.V89L|RAI14_uc003jis.2_Missense_Mutation_p.V163L|RAI14_uc003jit.2_Missense_Mutation_p.V160L|RAI14_uc011cok.1_Missense_Mutation_p.V152L	NM_015577	NP_056392	Q9P0K7	RAI14_HUMAN	retinoic acid induced 14 isoform a	160	ANK 5.					cell cortex|cytoskeleton	protein binding			ovary(1)	1	all_lung(31;0.000191)					GCTTCTTGCTGTACAAAATGG	0.428													11	270					0.000978159	0.00917326	0.000978159	1	0
SPEF2	79925	broad.mit.edu	37	5	35740308	35740308	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:35740308C>T	uc003jjo.2	+	23	3380	c.3269C>T	c.(3268-3270)TCC>TTC	p.S1090F	SPEF2_uc003jjp.1_Missense_Mutation_p.S576F	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1090					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GATTTCAACTCCCTTCCTGAT	0.438													11	96					0	0	0.000978159	0	0
CAPSL	133690	broad.mit.edu	37	5	35910013	35910013	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:35910013C>T	uc003jjt.1	-	4	575	c.480G>A	c.(478-480)AGG>AGA	p.R160R	CAPSL_uc003jju.1_Silent_p.R160R	NM_001042625	NP_001036090	Q8WWF8	CAPSL_HUMAN	calcyphosine-like	160	EF-hand 4.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(31;0.000268)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.167)|Colorectal(62;0.202)			CCAGAAATTTCCTAAATACTT	0.368													13	140					0	0	0.000566183	0	0
NIPBL	25836	broad.mit.edu	37	5	37064772	37064772	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:37064772C>G	uc003jkl.3	+	47	8692	c.8193C>G	c.(8191-8193)ACC>ACG	p.T2731T	NIPBL_uc003jkk.3_3'UTR|NIPBL_uc003jkn.2_3'UTR	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	2731					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			TGCAGAAAACCAGCAGTGGCT	0.507													4	186					0	0	3.59834e-05	0	0
C5orf42	65250	broad.mit.edu	37	5	37185170	37185170	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:37185170C>A	uc011cpa.1	-	25	4432	c.4201G>T	c.(4201-4203)GAG>TAG	p.E1401*	C5orf42_uc011coy.1_5'Flank|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Nonsense_Mutation_p.E476*|C5orf42_uc011cpb.1_Nonsense_Mutation_p.E282*	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	1401										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			ATCATTTCCTCAGTCTGGGGT	0.398													7	136					0.000274275	0.00290969	0.000274275	1	0
C5orf42	65250	broad.mit.edu	37	5	37187945	37187945	+	Splice_Site	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:37187945C>G	uc011cpa.1	-	22	4043	c.3812_splice	c.e22-1	p.G1271_splice	C5orf42_uc003jks.2_Splice_Site|C5orf42_uc011coz.1_Splice_Site_p.G346_splice|C5orf42_uc011cpb.1_Splice_Site_p.G152_splice	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250											ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			CTGAAGCAACCTAAAGCAGGA	0.343													3	46					0	0	0.00024832	0	0
EGFLAM	133584	broad.mit.edu	37	5	38425167	38425167	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:38425167G>T	uc003jlc.1	+	13	2107	c.1783G>T	c.(1783-1785)GGG>TGG	p.G595W	EGFLAM_uc003jlb.1_Missense_Mutation_p.G595W|EGFLAM_uc003jle.1_Missense_Mutation_p.G361W|EGFLAM_uc003jlf.1_5'UTR	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	595	EGF-like 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					CTGTCCCCTTGGGTTTAAAGG	0.463													11	172					2.27111e-07	2.94575e-06	0.00010058	1	0
HEATR7B2	133558	broad.mit.edu	37	5	41008722	41008722	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:41008722G>A	uc003jmj.3	-	33	4084	c.3594C>T	c.(3592-3594)ATC>ATT	p.I1198I	HEATR7B2_uc003jmi.3_Silent_p.I753I	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1198							binding			ovary(6)|central_nervous_system(2)	8						AGGGGTCTGGGATCTGCTGCT	0.567													7	38					0	0	0.000274275	0	0
HCN1	348980	broad.mit.edu	37	5	45262155	45262155	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:45262155C>A	uc003jok.2	-	8	2566	c.2541G>T	c.(2539-2541)TCG>TCT	p.S847S		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	847	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						GGATGGCTCCCGACGACATCT	0.647													5	89					8.12818e-05	0.000938396	8.12818e-05	1	0
SKIV2L2	23517	broad.mit.edu	37	5	54635985	54635985	+	Silent	SNP	G	T	T	rs142953160		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:54635985G>T	uc003jpy.3	+	6	929	c.663G>T	c.(661-663)ACG>ACT	p.T221T	SKIV2L2_uc011cqi.1_Silent_p.T120T	NM_015360	NP_056175	P42285	SK2L2_HUMAN	superkiller viralicidic activity 2-like 2	221	Helicase ATP-binding.				maturation of 5.8S rRNA	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(1)|skin(1)	2		Lung NSC(810;0.000744)|Breast(144;0.181)|Prostate(74;0.194)				TTAATCCTACGGCATCTTGTC	0.368													6	117					0.000442599	0.00445669	0.000442599	1	0
SKIV2L2	23517	broad.mit.edu	37	5	54654434	54654434	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:54654434C>G	uc003jpy.3	+	15	1833	c.1567C>G	c.(1567-1569)CGT>GGT	p.R523G	SKIV2L2_uc011cqi.1_Missense_Mutation_p.R422G	NM_015360	NP_056175	P42285	SK2L2_HUMAN	superkiller viralicidic activity 2-like 2	523	Helicase C-terminal.				maturation of 5.8S rRNA	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(1)|skin(1)	2		Lung NSC(810;0.000744)|Breast(144;0.181)|Prostate(74;0.194)				GATGTCTGGTCGTGCTGGAAG	0.323													5	117					0	0	0.000602214	0	0
IL6ST	3572	broad.mit.edu	37	5	55237587	55237587	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:55237587C>A	uc003jqq.2	-	17	2335	c.2080G>T	c.(2080-2082)GTG>TTG	p.V694L	uc003jqp.2_5'Flank|IL6ST_uc010iwb.2_Missense_Mutation_p.V633L|IL6ST_uc010iwc.2_3'UTR|IL6ST_uc010iwd.2_Missense_Mutation_p.V13L|IL6ST_uc011cqk.1_Missense_Mutation_p.V405L|IL6ST_uc003jqr.2_3'UTR	NM_002184	NP_002175	P40189	IL6RB_HUMAN	interleukin 6 signal transducer isoform 1	694	Cytoplasmic (Potential).				interleukin-6-mediated signaling pathway|leukemia inhibitory factor signaling pathway|negative regulation of interleukin-6-mediated signaling pathway|positive regulation of anti-apoptosis|positive regulation of cardiac muscle hypertrophy|positive regulation of osteoblast differentiation|positive regulation of T cell proliferation|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation vascular endothelial growth factor production	ciliary neurotrophic factor receptor complex|extracellular region|extracellular space|interleukin-6 receptor complex|oncostatin-M receptor complex	ciliary neurotrophic factor receptor activity|ciliary neurotrophic factor receptor binding|growth factor binding|protein homodimerization activity			large_intestine(1)|ovary(1)	2		Lung NSC(810;8.69e-05)|Prostate(74;0.00308)|Breast(144;0.0544)|Ovarian(174;0.223)				TCTATTTCCACAACACTTACA	0.323			O		hepatocellular ca								8	175					1.12685e-05	0.000138146	0.000274275	1	0
IL6ST	3572	broad.mit.edu	37	5	55252002	55252002	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:55252002C>A	uc003jqq.2	-	10	1373	c.1118G>T	c.(1117-1119)TGG>TTG	p.W373L	IL6ST_uc010iwb.2_Missense_Mutation_p.W373L|IL6ST_uc010iwc.2_Intron|IL6ST_uc010iwd.2_Intron|IL6ST_uc011cqk.1_Missense_Mutation_p.W84L|IL6ST_uc003jqr.2_3'UTR	NM_002184	NP_002175	P40189	IL6RB_HUMAN	interleukin 6 signal transducer isoform 1	373	Extracellular (Potential).|Fibronectin type-III 3.				interleukin-6-mediated signaling pathway|leukemia inhibitory factor signaling pathway|negative regulation of interleukin-6-mediated signaling pathway|positive regulation of anti-apoptosis|positive regulation of cardiac muscle hypertrophy|positive regulation of osteoblast differentiation|positive regulation of T cell proliferation|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation vascular endothelial growth factor production	ciliary neurotrophic factor receptor complex|extracellular region|extracellular space|interleukin-6 receptor complex|oncostatin-M receptor complex	ciliary neurotrophic factor receptor activity|ciliary neurotrophic factor receptor binding|growth factor binding|protein homodimerization activity			large_intestine(1)|ovary(1)	2		Lung NSC(810;8.69e-05)|Prostate(74;0.00308)|Breast(144;0.0544)|Ovarian(174;0.223)				ATGTGATTTCCATCTTGTGAG	0.303			O		hepatocellular ca								8	189					7.48243e-07	9.56199e-06	0.000442599	1	0
KIF2A	3796	broad.mit.edu	37	5	61659529	61659529	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:61659529G>C	uc003jsy.3	+	14	1581	c.1270G>C	c.(1270-1272)GGT>CGT	p.G424R	KIF2A_uc003jsz.3_Missense_Mutation_p.G424R|KIF2A_uc010iwp.2_Missense_Mutation_p.G405R|KIF2A_uc003jsx.3_Missense_Mutation_p.G404R|KIF2A_uc010iwq.2_Missense_Mutation_p.G227R	NM_004520	NP_004511	O00139	KIF2A_HUMAN	kinesin heavy chain member 2 isoform 1	424	Kinesin-motor.				blood coagulation|cell differentiation|cell division|microtubule-based movement|mitotic prometaphase|mitotic spindle organization|nervous system development	centrosome|cytosol|microtubule|spindle pole	ATP binding|microtubule motor activity|protein binding				0		Lung NSC(810;8.94e-06)|Prostate(74;0.0132)|Ovarian(174;0.051)|Breast(144;0.077)		Lung(70;0.14)		TAGAACATCCGGTCAAACATC	0.333													4	216					0	0	3.59834e-05	0	0
KIF2A	3796	broad.mit.edu	37	5	61677032	61677032	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:61677032C>A	uc003jsy.3	+	19	2298	c.1987C>A	c.(1987-1989)CTT>ATT	p.L663I	KIF2A_uc003jsz.3_Missense_Mutation_p.L701I|KIF2A_uc010iwp.2_Missense_Mutation_p.L644I|KIF2A_uc003jsx.3_Missense_Mutation_p.L643I|KIF2A_uc010iwq.2_Missense_Mutation_p.L466I	NM_004520	NP_004511	O00139	KIF2A_HUMAN	kinesin heavy chain member 2 isoform 1	663	Potential.				blood coagulation|cell differentiation|cell division|microtubule-based movement|mitotic prometaphase|mitotic spindle organization|nervous system development	centrosome|cytosol|microtubule|spindle pole	ATP binding|microtubule motor activity|protein binding				0		Lung NSC(810;8.94e-06)|Prostate(74;0.0132)|Ovarian(174;0.051)|Breast(144;0.077)		Lung(70;0.14)		TGCTACACAACTTGAAGCTAT	0.343													7	440					0.000978159	0.00917326	0.000978159	1	0
ADAMTS6	11174	broad.mit.edu	37	5	64569214	64569214	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:64569214G>A	uc003jtp.2	-	12	2387	c.1573C>T	c.(1573-1575)CCA>TCA	p.P525S	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Missense_Mutation_p.P146S	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	525	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TCAGCTGCTGGAATACTGTTG	0.418													23	128					0	0	0.000184323	0	0
GTF2H2C	728340	broad.mit.edu	37	5	68875607	68875607	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:68875607G>T	uc003jwx.3	+	11	744	c.673G>T	c.(673-675)GAA>TAA	p.E225*	GTF2H2C_uc003jww.1_3'UTR|GTF2H2C_uc003jwz.3_Nonsense_Mutation_p.E225*|GTF2H2C_uc011cre.1_Nonsense_Mutation_p.E168*|GTF2H2C_uc003jwy.3_Nonsense_Mutation_p.E225*|GTF2H2C_uc003jxa.1_5'Flank	NM_001098728	NP_001092198	Q6P1K8	T2H2L_HUMAN	general transcription factor IIH, polypeptide	225	VWFA.				DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding				0						TATTTTAGATGAAAGCCATTA	0.363													13	526					4.3838e-07	5.65166e-06	0.000151284	1	0
BDP1	55814	broad.mit.edu	37	5	70782429	70782429	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:70782429C>A	uc003kbp.1	+	9	1451	c.1188C>A	c.(1186-1188)TCC>TCA	p.S396S	BDP1_uc003kbn.1_Silent_p.S396S|BDP1_uc003kbo.2_Silent_p.S396S	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	396	Required for phosphorylation by CSNK2A1.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		AGAAGAAATCCACCAAACCAC	0.318													10	209					0.000978159	0.00917326	0.000978159	1	0
BDP1	55814	broad.mit.edu	37	5	70818205	70818205	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:70818205G>T	uc003kbp.1	+	23	5344	c.5081G>T	c.(5080-5082)AGT>ATT	p.S1694I	BDP1_uc003kbo.2_Missense_Mutation_p.S1694I|BDP1_uc003kbq.1_Splice_Site	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1694					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		AGAGCACACAGTAAGAAAGAG	0.413													7	310					0.000274275	0.00290969	0.000274275	1	0
MAP1B	4131	broad.mit.edu	37	5	71501044	71501044	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:71501044C>G	uc003kbw.3	+	7	7626	c.7385C>G	c.(7384-7386)CCT>CGT	p.P2462R		NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	2462						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		GAATCCTTCCCTGCATGCAAG	0.418													4	114					0	0	3.59834e-05	0	0
TNPO1	3842	broad.mit.edu	37	5	72178919	72178919	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:72178919C>G	uc003kck.3	+	11	1157	c.1010C>G	c.(1009-1011)CCT>CGT	p.P337R	TNPO1_uc011csi.1_RNA|TNPO1_uc011csj.1_Missense_Mutation_p.P287R|TNPO1_uc003kch.2_Missense_Mutation_p.P329R|TNPO1_uc003kci.3_Missense_Mutation_p.P329R|TNPO1_uc003kcg.3_Missense_Mutation_p.P329R	NM_002270	NP_002261	Q92973	TNPO1_HUMAN	transportin 1 isoform 1	337					interspecies interaction between organisms|mRNA metabolic process|protein import into nucleus, translocation	cytosol|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			skin(3)|urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)	7		Lung NSC(167;0.0053)|Ovarian(174;0.0175)		OV - Ovarian serous cystadenocarcinoma(47;6.14e-54)		GAAACGATTCCTGATAGTGAA	0.373													4	171					0	0	3.59834e-05	0	0
TMEM171	134285	broad.mit.edu	37	5	72424224	72424224	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:72424224G>C	uc003kcm.2	+	3	852	c.648G>C	c.(646-648)TCG>TCC	p.S216S	TMEM171_uc003kcn.3_Silent_p.S216S	NM_173490	NP_775761	Q8WVE6	TM171_HUMAN	transmembrane protein 171 isoform 1	216						integral to membrane					0		Lung NSC(167;0.0378)|Ovarian(174;0.0908)|Prostate(461;0.165)		OV - Ovarian serous cystadenocarcinoma(47;1.87e-54)|Lung(70;0.115)		TAGGTGACTCGGTAATAATAT	0.398													6	271					0	0	0.000442599	0	0
UTP15	84135	broad.mit.edu	37	5	72864248	72864248	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:72864248C>G	uc003kcw.1	+	4	410	c.187C>G	c.(187-189)CAC>GAC	p.H63D	UTP15_uc011cso.1_Missense_Mutation_p.H44D|UTP15_uc011csp.1_5'UTR|UTP15_uc010ize.1_Missense_Mutation_p.H63D|ANKRA2_uc003kcu.1_5'Flank|ANKRA2_uc003kcv.2_5'Flank	NM_032175	NP_115551	Q8TED0	UTP15_HUMAN	UTP15, U3 small nucleolar ribonucleoprotein,	63	WD 1.				rRNA processing	cytoplasm|nucleolus					0		Lung NSC(167;0.00405)|Ovarian(174;0.0129)		OV - Ovarian serous cystadenocarcinoma(47;7.76e-55)		CTTGTAGATTCACATTTATGG	0.323													4	196					0	0	3.59834e-05	0	0
RGNEF	64283	broad.mit.edu	37	5	73072453	73072453	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:73072453G>T	uc011csq.1	+	5	783	c.772G>T	c.(772-774)GAG>TAG	p.E258*	RGNEF_uc003kcx.2_Nonsense_Mutation_p.E258*|RGNEF_uc003kcy.1_Nonsense_Mutation_p.E258*|RGNEF_uc010izf.2_Nonsense_Mutation_p.E258*	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	258					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		CCACACAGCCGAGCATTTGTT	0.463													7	233					2.17888e-05	0.000264662	0.000442599	1	0
HMGCR	3156	broad.mit.edu	37	5	74650434	74650434	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:74650434T>C	uc003kdp.2	+	12	1631	c.1475T>C	c.(1474-1476)GTA>GCA	p.V492A	HMGCR_uc011cst.1_Missense_Mutation_p.V512A|HMGCR_uc003kdq.2_Missense_Mutation_p.V492A	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	492	Catalytic.				cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	GAGCGTGGTGTATCTATTCGC	0.408													4	372					0	0	0.000602214	0	0
HMGCR	3156	broad.mit.edu	37	5	74654481	74654481	+	Splice_Site	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:74654481G>C	uc003kdp.2	+	16	2143	c.1987_splice	c.e16-1	p.G663_splice	HMGCR_uc011cst.1_Splice_Site_p.G683_splice|HMGCR_uc003kdq.2_Splice_Site_p.G610_splice|HMGCR_uc010izo.2_5'Flank|HMGCR_uc010izp.2_5'Flank	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase						cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	CTTGTTAACAGGGTACAGAGA	0.348													6	173					0	0	0.000157383	0	0
COL4A3BP	10087	broad.mit.edu	37	5	74712778	74712778	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:74712778C>G	uc011csu.1	-	7	1182	c.760G>C	c.(760-762)GGA>CGA	p.G254R	COL4A3BP_uc003kds.2_Missense_Mutation_p.G254R|COL4A3BP_uc003kdt.2_Missense_Mutation_p.G382R|COL4A3BP_uc003kdu.2_Missense_Mutation_p.G254R	NM_005713	NP_005704	Q9Y5P4	C43BP_HUMAN	alpha 3 type IV collagen binding protein isoform	254					ER to Golgi ceramide transport|immune response	cytosol|endoplasmic reticulum membrane|Golgi apparatus	ceramide binding|phosphatidylinositol-4-phosphate binding|protein binding|protein kinase activity			skin(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;1e-53)		GCAAGGATTCCAGCAGTAGTT	0.358													4	154					0	0	3.59834e-05	0	0
F2RL1	2150	broad.mit.edu	37	5	76128664	76128664	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:76128664C>A	uc003keo.2	+	2	407	c.232C>A	c.(232-234)CTT>ATT	p.L78I		NM_005242	NP_005233	P55085	PAR2_HUMAN	coagulation factor II (thrombin) receptor-like 1	78	Helical; Name=1; (Potential).				blood coagulation|elevation of cytosolic calcium ion concentration|positive regulation of leukocyte chemotaxis|positive regulation of positive chemotaxis|regulation of blood coagulation	Golgi apparatus|integral to plasma membrane	receptor binding|thrombin receptor activity			central_nervous_system(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;7.7e-51)|Epithelial(54;2.77e-45)|all cancers(79;3.47e-41)		CACTGTCTTCCTTCCAATTGT	0.463													10	393					2.31682e-05	0.000280436	0.000308642	1	0
AGGF1	55109	broad.mit.edu	37	5	76348552	76348552	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:76348552G>T	uc003ket.2	+	9	1747	c.1387G>T	c.(1387-1389)GAC>TAC	p.D463Y		NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	463	FHA.				angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		AATTTATTTTGACCATGACTT	0.299													16	667					8.00594e-06	9.89361e-05	0.000958276	1	0
AGGF1	55109	broad.mit.edu	37	5	76348590	76348590	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:76348590C>A	uc003ket.2	+	9	1785	c.1425C>A	c.(1423-1425)GGC>GGA	p.G475G		NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	475	FHA.				angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		TGGATCAAGGCAGTCAAAATG	0.284													12	734					1.61879e-10	2.15821e-09	0.00010058	1	0
PDE8B	8622	broad.mit.edu	37	5	76621534	76621534	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:76621534C>G	uc003kfa.2	+	3	615	c.570C>G	c.(568-570)TTC>TTG	p.F190L	PDE8B_uc003kfb.2_Missense_Mutation_p.F170L|PDE8B_uc003kfc.2_Missense_Mutation_p.F190L|PDE8B_uc003kfd.2_Missense_Mutation_p.F190L|PDE8B_uc003kfe.2_Missense_Mutation_p.F190L	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	190					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		CTCAGAACTTCGATGCAGAAG	0.333													5	302					0	0	0.000602214	0	0
PDE8B	8622	broad.mit.edu	37	5	76715591	76715591	+	Splice_Site	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:76715591G>T	uc003kfa.2	+	19	2175	c.2130_splice	c.e19-1	p.R710_splice	PDE8B_uc003kfb.2_Splice_Site_p.R690_splice|PDE8B_uc003kfc.2_Splice_Site_p.R655_splice|PDE8B_uc003kfd.2_Splice_Site_p.R663_splice|PDE8B_uc003kfe.2_Splice_Site_p.R613_splice	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1						cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		GGTTATTTTAGGAACCATTAT	0.418													13	365					0.000422831	0.00445499	0.000422831	1	0
LHFPL2	10184	broad.mit.edu	37	5	77805809	77805809	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:77805809G>A	uc003kfo.2	-	4	904	c.228C>T	c.(226-228)TTC>TTT	p.F76F		NM_005779	NP_005770	Q6ZUX7	LHPL2_HUMAN	lipoma HMGIC fusion partner-like 2	76						integral to membrane					0		all_lung(232;0.000409)|Lung NSC(167;0.00108)|Ovarian(174;0.0107)|Prostate(461;0.218)		OV - Ovarian serous cystadenocarcinoma(54;6.48e-46)|Epithelial(54;8.43e-42)|all cancers(79;1.42e-36)		TGTCCCGCTGGAAGTGCTGCA	0.562													7	42					0	0	8.12818e-05	0	0
ARSB	411	broad.mit.edu	37	5	78076347	78076347	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:78076347G>A	uc003kfq.2	-	8	2761	c.1475C>T	c.(1474-1476)CCT>CTT	p.P492L		NM_000046	NP_000037	P15848	ARSB_HUMAN	arylsulfatase B isoform 1 precursor	492					lysosomal transport|lysosome organization	lysosome	arylsulfatase activity|metal ion binding|N-acetylgalactosamine-4-sulfatase activity			upper_aerodigestive_tract(1)	1		all_lung(232;0.000637)|Lung NSC(167;0.00173)|Ovarian(174;0.0105)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;4.24e-44)|Epithelial(54;3.12e-39)|all cancers(79;3.02e-34)		GACGATGTGAGGATATTCTCT	0.527													4	76					0	0	0.000157383	0	0
CMYA5	202333	broad.mit.edu	37	5	79030213	79030213	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:79030213G>C	uc003kgc.2	+	2	5697	c.5625G>C	c.(5623-5625)GCG>GCC	p.A1875A		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1875						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CCAAGCCTGCGGATGTCAAAG	0.368													4	112					0	0	0.000602214	0	0
CMYA5	202333	broad.mit.edu	37	5	79033517	79033517	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:79033517T>C	uc003kgc.2	+	2	9001	c.8929T>C	c.(8929-8931)TTA>CTA	p.L2977L		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2977	Potential.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GCAAGATAAATTAGAATATTT	0.348													16	72					0	0	0.000229342	0	0
MSH3	4437	broad.mit.edu	37	5	79961052	79961052	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:79961052G>T	uc003kgz.2	+	3	702	c.449G>T	c.(448-450)AGA>ATA	p.R150I		NM_002439	NP_002430	P20585	MSH3_HUMAN	mutS homolog 3	150	Interaction with EXO1.				maintenance of DNA repeat elements|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|somatic recombination of immunoglobulin gene segments	MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|enzyme binding|loop DNA binding|Y-form DNA binding			lung(2)|ovary(1)|breast(1)	4		Lung NSC(167;0.00479)|all_lung(232;0.00507)|Ovarian(174;0.0261)|Breast(144;0.244)		OV - Ovarian serous cystadenocarcinoma(54;2.38e-45)|Epithelial(54;1.58e-38)|all cancers(79;4.93e-33)		CCTCAAAGTAGAGTCCAGACA	0.418								MMR					7	121					0.000442599	0.00445669	0.000442599	1	0
RPS23	6228	broad.mit.edu	37	5	81573552	81573552	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:81573552C>A	uc003khu.2	-	2	217	c.124G>T	c.(124-126)GGA>TGA	p.G42*	ATP6AP1L_uc003khv.2_5'Flank	NM_001025	NP_001016	P62266	RS23_HUMAN	ribosomal protein S23	42					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	protein binding|structural constituent of ribosome				0		Lung NSC(167;0.0025)|all_lung(232;0.00278)|Ovarian(174;0.0336)		OV - Ovarian serous cystadenocarcinoma(54;1.94e-42)|Epithelial(54;8.38e-37)|all cancers(79;1.42e-31)		GAAGCACCTCCAAAAGGGTTG	0.443													10	268					1.3612e-06	1.73233e-05	0.000308642	1	0
GPR98	84059	broad.mit.edu	37	5	89931017	89931017	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:89931017G>C	uc003kju.2	+	10	2022	c.1926G>C	c.(1924-1926)CTG>CTC	p.L642L	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	642	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTTCTTTACTGGTTACTCCAG	0.378													6	113					0	0	3.59834e-05	0	0
GPR98	84059	broad.mit.edu	37	5	90077254	90077254	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:90077254G>A	uc003kju.2	+	65	13186	c.13090G>A	c.(13090-13092)GAT>AAT	p.D4364N	GPR98_uc003kjt.2_Missense_Mutation_p.D2070N|GPR98_uc003kjw.2_Missense_Mutation_p.D25N	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4364	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AAGAGGGTATGATTTTACCAT	0.303													7	42					0	0	8.12818e-05	0	0
FAM172A	83989	broad.mit.edu	37	5	93410361	93410361	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:93410361G>C	uc010jbd.2	-	2	303	c.96C>G	c.(94-96)ACC>ACG	p.T32T	FAM172A_uc011cuf.1_Intron|FAM172A_uc011cug.1_Intron|FAM172A_uc011cuh.1_5'UTR|FAM172A_uc011cui.1_RNA|FAM172A_uc011cuj.1_Intron|FAM172A_uc003kkm.3_Silent_p.T32T	NM_032042	NP_114431	Q8WUF8	F172A_HUMAN	hypothetical protein LOC83989 isoform 1	32						endoplasmic reticulum|extracellular region					0						CTTTCAGTGCGGTAGTCTTTT	0.358													5	74					0	0	3.59834e-05	0	0
TTC37	9652	broad.mit.edu	37	5	94830458	94830458	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:94830458C>G	uc003klb.2	-	36	4000	c.3730G>C	c.(3730-3732)GGA>CGA	p.G1244R		NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	1244							binding			ovary(3)|pancreas(1)	4						GAACTGCTTCCCATAGCCAAC	0.383													5	203					0	0	0.000602214	0	0
TTC37	9652	broad.mit.edu	37	5	94876527	94876527	+	Missense_Mutation	SNP	C	G	G	rs145559959	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:94876527C>G	uc003klb.2	-	8	680	c.410G>C	c.(409-411)CGA>CCA	p.R137P	TTC37_uc010jbf.1_Missense_Mutation_p.R89P	NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	137							binding			ovary(3)|pancreas(1)	4						GTGCCATGTTCGAGCCACCTA	0.313													4	186					0	0	3.59834e-05	0	0
ELL2	22936	broad.mit.edu	37	5	95234496	95234496	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:95234496C>A	uc003klr.3	-	8	1323	c.973G>T	c.(973-975)GAG>TAG	p.E325*		NM_012081	NP_036213	O00472	ELL2_HUMAN	elongation factor, RNA polymerase II, 2	325					regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter	transcription elongation factor complex				central_nervous_system(1)	1		all_cancers(142;2.04e-06)|all_epithelial(76;3.1e-09)|all_lung(232;0.00309)|Lung NSC(167;0.00454)|Ovarian(225;0.0165)|Colorectal(57;0.0343)|Breast(839;0.198)		all cancers(79;2.16e-15)		TCAATAAACTCTGAATCCAAA	0.378													9	184					0.000978159	0.00917326	0.000978159	1	0
PCSK1	5122	broad.mit.edu	37	5	95761619	95761619	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:95761619G>T	uc003kls.1	-	3	507	c.301C>A	c.(301-303)CAA>AAA	p.Q101K		NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	101					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TCATACTGTTGTTCAGCCCAT	0.383													4	59					0.000157383	0.00173811	0.000157383	1	0
RIOK2	55781	broad.mit.edu	37	5	96503571	96503571	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:96503571C>A	uc003kmz.2	-	8	1107	c.997G>T	c.(997-999)GAA>TAA	p.E333*	RIOK2_uc003kna.3_Nonsense_Mutation_p.E333*	NM_018343	NP_060813	Q9BVS4	RIOK2_HUMAN	RIO kinase 2 isoform 1	333	Protein kinase.						ATP binding|protein serine/threonine kinase activity			kidney(1)	1		all_cancers(142;0.000125)|all_epithelial(76;8.48e-07)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0676)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0657)		AATGAGAATTCAGATCCCTCT	0.418													8	231					0.000442599	0.00445669	0.000442599	1	0
CHD1	1105	broad.mit.edu	37	5	98236986	98236986	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:98236986G>T	uc003knf.2	-	5	639	c.491C>A	c.(490-492)TCA>TAA	p.S164*		NM_001270	NP_001261	O14646	CHD1_HUMAN	chromodomain helicase DNA binding protein 1	164					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|methylated histone residue binding			lung(2)|ovary(1)|breast(1)|pancreas(1)	5		all_cancers(142;5.36e-08)|all_epithelial(76;6.97e-11)|Lung NSC(167;0.000693)|Prostate(80;0.000986)|all_lung(232;0.00119)|Ovarian(225;0.024)|Colorectal(57;0.117)		COAD - Colon adenocarcinoma(37;0.0717)	Epirubicin(DB00445)	TTCAGATTCTGAATCTGAACC	0.348													8	215					6.40141e-05	0.00075092	0.000978159	1	0
PPIP5K2	23262	broad.mit.edu	37	5	102472449	102472449	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:102472449C>A	uc003kod.3	+	4	843	c.324C>A	c.(322-324)GAC>GAA	p.D108E	PPIP5K2_uc011cva.1_RNA|PPIP5K2_uc003koe.2_Missense_Mutation_p.D108E|PPIP5K2_uc010jbo.1_Missense_Mutation_p.D30E	NM_015216	NP_056031	O43314	VIP2_HUMAN	Histidine acid phosphatase domain containing 1	108					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity			ovary(1)|skin(1)	2						TTCCACTGGACAAAGCGGTTG	0.353													6	379					0.000673444	0.00655963	0.000673444	1	0
FER	2241	broad.mit.edu	37	5	108203558	108203558	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:108203558G>A	uc003kop.1	+	6	956	c.572G>A	c.(571-573)GGG>GAG	p.G191E	FER_uc011cve.1_Missense_Mutation_p.G131E|FER_uc011cvf.1_RNA|FER_uc011cvg.1_Missense_Mutation_p.G16E	NM_005246	NP_005237	P16591	FER_HUMAN	fer (fps/fes related) tyrosine kinase	191	Important for interaction with membranes containing phosphoinositides.				intracellular signal transduction|peptidyl-tyrosine phosphorylation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|kidney(1)	5		all_cancers(142;2.86e-06)|all_epithelial(76;9.81e-08)|Prostate(80;0.00972)|Lung NSC(167;0.039)|Ovarian(225;0.0448)|all_lung(232;0.0496)|Colorectal(57;0.0986)|Breast(839;0.152)		OV - Ovarian serous cystadenocarcinoma(64;6.77e-10)|Epithelial(69;4.13e-08)|COAD - Colon adenocarcinoma(37;0.0174)		GCGTTGAAAGGGGCACAGCTC	0.398													4	47					0	0	0.00024832	0	0
DCP2	167227	broad.mit.edu	37	5	112321553	112321553	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:112321553C>G	uc003kqh.2	+	2	273	c.75C>G	c.(73-75)CCC>CCG	p.P25P	DCP2_uc011cwa.1_Intron	NM_152624	NP_689837	Q8IU60	DCP2_HUMAN	DCP2 decapping enzyme	25					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasmic mRNA processing body|cytosol|nucleus|RNA-induced silencing complex	exoribonuclease activity, producing 5'-phosphomonoesters|manganese ion binding|protein binding|protein binding|RNA binding				0		all_cancers(142;4.41e-05)|all_epithelial(76;3.65e-07)|Colorectal(10;0.00115)|Prostate(80;0.00133)|Ovarian(225;0.0443)		OV - Ovarian serous cystadenocarcinoma(64;6.98e-08)|Epithelial(69;7.87e-08)|all cancers(49;1.06e-05)|COAD - Colon adenocarcinoma(37;0.0123)|Colorectal(14;0.0171)		TGCATATTCCCAGCGAGGAAA	0.353													4	161					0	0	0.00024832	0	0
YTHDC2	64848	broad.mit.edu	37	5	112915282	112915282	+	Splice_Site	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:112915282G>T	uc003kqn.2	+	24	3428	c.3245_splice	c.e24-1	p.V1082_splice		NM_022828	NP_073739	Q9H6S0	YTDC2_HUMAN	YTH domain containing 2								ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(2)|central_nervous_system(1)	3		all_cancers(142;7.69e-05)|all_epithelial(76;6.42e-07)|Colorectal(10;0.00278)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Lung NSC(810;0.143)|all_lung(232;0.163)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;7.2e-08)|Epithelial(69;8.83e-08)|all cancers(49;6.9e-06)|COAD - Colon adenocarcinoma(37;0.0458)|Colorectal(14;0.0594)		TACTTGGACAGTGGATGGCAT	0.373													8	174					1.58986e-06	2.00859e-05	0.000673444	1	0
DMXL1	1657	broad.mit.edu	37	5	118480234	118480234	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:118480234G>C	uc003ksd.2	+	15	2651	c.2470G>C	c.(2470-2472)GGC>CGC	p.G824R	DMXL1_uc010jcl.1_Missense_Mutation_p.G824R	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	824										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		TATTCAGCATGGCAGAAAAAC	0.313													4	167					0	0	3.59834e-05	0	0
LOX	4015	broad.mit.edu	37	5	121413628	121413628	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:121413628A>G	uc003ksu.2	-	1	428	c.53T>C	c.(52-54)CTA>CCA	p.L18P	LOX_uc010jcq.2_5'Flank|LOX_uc011cwk.1_5'Flank|LOX_uc010jcr.2_5'Flank	NM_002317	NP_002308	P28300	LYOX_HUMAN	lysyl oxidase preproprotein	18					protein modification process	extracellular space	copper ion binding|protein-lysine 6-oxidase activity			lung(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)|Ovarian(225;0.0814)|Breast(839;0.143)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;2.14e-11)|OV - Ovarian serous cystadenocarcinoma(64;7.87e-10)|all cancers(49;2.49e-09)|COAD - Colon adenocarcinoma(49;0.02)		GCAGTGCACTAGCGCGCAGAG	0.701													3	16					0	0	6.4e-05	0	0
ZNF474	133923	broad.mit.edu	37	5	121488389	121488389	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:121488389C>T	uc003ksv.2	+	2	1080	c.704C>T	c.(703-705)TCC>TTC	p.S235F		NM_207317	NP_997200	Q6S9Z5	ZN474_HUMAN	zinc finger protein 474	235						intracellular	zinc ion binding				0		all_cancers(142;0.229)|Prostate(80;0.0387)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000197)|Epithelial(69;0.00029)|all cancers(49;0.00415)		GGCACCCTGTCCCTTCCTATT	0.517													19	142					0	0	0.000375601	0	0
CSNK1G3	1456	broad.mit.edu	37	5	122924176	122924176	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:122924176C>A	uc003ktm.2	+	8	1534	c.815C>A	c.(814-816)CCA>CAA	p.P272Q	CSNK1G3_uc003ktl.2_Missense_Mutation_p.P272Q|CSNK1G3_uc003ktn.2_Missense_Mutation_p.P272Q|CSNK1G3_uc003kto.2_Missense_Mutation_p.P272Q|CSNK1G3_uc011cwr.1_Missense_Mutation_p.P197Q|CSNK1G3_uc011cws.1_Missense_Mutation_p.P159Q|CSNK1G3_uc010jda.2_Missense_Mutation_p.P272Q	NM_004384	NP_004375	Q9Y6M4	KC1G3_HUMAN	casein kinase 1, gamma 3 isoform 1	272	Protein kinase.				Wnt receptor signaling pathway	cytoplasm	ATP binding|protein serine/threonine kinase activity				0		all_cancers(142;0.0156)|Prostate(80;0.0322)|Lung NSC(810;0.245)	KIRC - Kidney renal clear cell carcinoma(527;0.165)|Kidney(363;0.229)	OV - Ovarian serous cystadenocarcinoma(64;0.000121)|Epithelial(69;0.000227)|all cancers(49;0.00176)		CGGGCTACACCAATAGAAGTG	0.289													7	108					1.12685e-05	0.000138146	0.000274275	1	0
ALDH7A1	501	broad.mit.edu	37	5	125896775	125896775	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:125896775C>A	uc003ktx.2	-	10	1105	c.913G>T	c.(913-915)GCC>TCC	p.A305S	ALDH7A1_uc003ktv.2_5'UTR|ALDH7A1_uc003kty.2_RNA|ALDH7A1_uc011cxa.1_Missense_Mutation_p.A332S	NM_001182	NP_001173	P49419	AL7A1_HUMAN	aldehyde dehydrogenase 7 family, member A1	305					cellular aldehyde metabolic process|lysine catabolic process|sensory perception of sound	cytosol|mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity|betaine-aldehyde dehydrogenase activity|L-aminoadipate-semialdehyde dehydrogenase activity			kidney(2)|ovary(1)	3		all_cancers(142;0.24)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.0584)|Kidney(363;0.0934)	Epithelial(69;0.0417)|OV - Ovarian serous cystadenocarcinoma(64;0.068)|all cancers(49;0.109)	NADH(DB00157)|Pyridoxine(DB00165)	GCAGCCTTACCAATAATGGCA	0.358													8	185					1.58986e-06	2.00859e-05	0.000673444	1	0
LMNB1	4001	broad.mit.edu	37	5	126171916	126171916	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:126171916G>T	uc003kud.1	+	11	2089	c.1721G>T	c.(1720-1722)GGA>GTA	p.G574V	LMNB1_uc010jdb.1_RNA|LMNB1_uc011cxb.1_Missense_Mutation_p.G364V	NM_005573	NP_005564	P20700	LMNB1_HUMAN	lamin B1	574	Tail.				cellular component disassembly involved in apoptosis	lamin filament|nuclear inner membrane	protein binding|structural molecule activity			kidney(1)|central_nervous_system(1)	2		all_cancers(142;0.103)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.033)|OV - Ovarian serous cystadenocarcinoma(64;0.0398)|all cancers(49;0.0903)		CCTCATCAGGGAACCCCAAGA	0.323													10	290					1.5842e-08	2.08899e-07	0.000151284	1	0
FBN2	2201	broad.mit.edu	37	5	127595312	127595312	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:127595312C>G	uc003kuu.2	-	65	9013	c.8574G>C	c.(8572-8574)ACG>ACC	p.T2858T		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2858					bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		TCTTCTTGGCCGTGTGCAAGT	0.507													5	131					0	0	0.000157383	0	0
SLC27A6	28965	broad.mit.edu	37	5	128302275	128302275	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:128302275C>G	uc003kuy.2	+	2	841	c.445C>G	c.(445-447)CGC>GGC	p.R149G	SLC27A6_uc003kuz.2_Missense_Mutation_p.R149G	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	149					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		GAATTGCATCCGCGCCTGTGG	0.587													4	42					0	0	0.000602214	0	0
SLC27A6	28965	broad.mit.edu	37	5	128359363	128359363	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:128359363C>A	uc003kuy.2	+	7	1611	c.1215C>A	c.(1213-1215)CCC>CCA	p.P405P	SLC27A6_uc003kuz.2_Silent_p.P405P	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	405					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		AAGATGAACCCATGAGAAATG	0.323													8	79					3.86212e-05	0.000457303	0.000673444	1	0
LYRM7	90624	broad.mit.edu	37	5	130535278	130535278	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:130535278C>G	uc003kvg.1	+	5	372	c.299C>G	c.(298-300)CCA>CGA	p.P100R		NM_181705	NP_859056	Q5U5X0	LYRM7_HUMAN	Lyrm7 homolog	100											0		all_cancers(142;0.0377)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TGTGATGCACCAACTCAGAAG	0.323													4	138					0	0	3.59834e-05	0	0
RAPGEF6	51735	broad.mit.edu	37	5	130897736	130897736	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:130897736C>A	uc003kvn.1	-	5	492	c.286G>T	c.(286-288)GGT>TGT	p.G96C	RAPGEF6_uc003kvp.1_Missense_Mutation_p.G146C|RAPGEF6_uc003kvo.1_Missense_Mutation_p.G96C|RAPGEF6_uc010jdi.1_Missense_Mutation_p.G96C|RAPGEF6_uc010jdj.1_Missense_Mutation_p.G96C|RAPGEF6_uc003kvr.2_Missense_Mutation_p.G96C|RAPGEF6_uc011cxe.1_RNA|RAPGEF6_uc010jdk.2_Missense_Mutation_p.G96C	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	96					Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		AACTGCTTACCAAAACTATAA	0.289													8	235					3.86212e-05	0.000457303	0.000673444	1	0
RAD50	10111	broad.mit.edu	37	5	131931309	131931309	+	Missense_Mutation	SNP	C	G	G	rs142947311		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:131931309C>G	uc003kxi.2	+	13	2401	c.2014C>G	c.(2014-2016)CAG>GAG	p.Q672E	RAD50_uc003kxh.2_Missense_Mutation_p.Q533E	NM_005732	NP_005723	Q92878	RAD50_HUMAN	RAD50 homolog isoform 1	672	Zinc-hook.|Potential.				DNA duplex unwinding|double-strand break repair via homologous recombination|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|telomere maintenance via telomerase	Mre11 complex|nuclear chromosome, telomeric region|nucleoplasm	ATP binding|DNA binding|nuclease activity|protein binding, bridging|zinc ion binding			lung(2)|ovary(1)|skin(1)	4		all_cancers(142;0.0368)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GTTCATTACTCAGCTAACAGA	0.383								Homologous_recombination					3	72					0	0	0.000602214	0	0
RAD50	10111	broad.mit.edu	37	5	131953890	131953890	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:131953890G>T	uc003kxi.2	+	21	3680	c.3293G>T	c.(3292-3294)CGG>CTG	p.R1098L	RAD50_uc003kxh.2_Missense_Mutation_p.R959L	NM_005732	NP_005723	Q92878	RAD50_HUMAN	RAD50 homolog isoform 1	1098					DNA duplex unwinding|double-strand break repair via homologous recombination|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|telomere maintenance via telomerase	Mre11 complex|nuclear chromosome, telomeric region|nucleoplasm	ATP binding|DNA binding|nuclease activity|protein binding, bridging|zinc ion binding			lung(2)|ovary(1)|skin(1)	4		all_cancers(142;0.0368)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CCACAATTTCGGGATGCTGAG	0.328								Homologous_recombination					10	227					6.40141e-05	0.00075092	0.000978159	1	0
KIF3A	11127	broad.mit.edu	37	5	132038328	132038328	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:132038328G>C	uc003kxo.2	-	12	1753	c.1599C>G	c.(1597-1599)ACC>ACG	p.T533T	KIF3A_uc003kxm.2_Silent_p.T115T|KIF3A_uc003kxn.2_Silent_p.T518T|KIF3A_uc011cxf.1_Silent_p.T560T|KIF3A_uc003kxp.2_Silent_p.T536T	NM_007054	NP_008985	Q9Y496	KIF3A_HUMAN	kinesin family member 3A	533	Potential.				blood coagulation|organelle organization|plus-end-directed vesicle transport along microtubule	centrosome|cytosol|kinesin II complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|protein binding			pancreas(1)	1		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CTTGCAAACTGGTATATTTTT	0.328													4	249					0	0	8.12818e-05	0	0
SEPT8	23176	broad.mit.edu	37	5	132099398	132099398	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:132099398C>G	uc003kxr.2	-	4	772	c.534G>C	c.(532-534)AAG>AAC	p.K178N	SEPT8_uc003kxs.1_Missense_Mutation_p.K178N|SEPT8_uc003kxu.2_Missense_Mutation_p.K178N|SEPT8_uc011cxi.1_Missense_Mutation_p.K176N|SEPT8_uc003kxv.2_Missense_Mutation_p.K176N|SEPT8_uc003kxt.2_Missense_Mutation_p.K118N	NM_001098811	NP_001092281	Q92599	SEPT8_HUMAN	septin 8 isoform a	178					cell cycle	septin complex	GTP binding|protein binding			ovary(2)	2		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ACAGGGATACCTTGCTGTCTA	0.542													4	206					0	0	0.000157383	0	0
AFF4	27125	broad.mit.edu	37	5	132228022	132228022	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:132228022G>T	uc003kyd.2	-	13	2879	c.2471C>A	c.(2470-2472)CCA>CAA	p.P824Q	AFF4_uc011cxk.1_Missense_Mutation_p.P502Q|AFF4_uc003kye.1_Missense_Mutation_p.P824Q	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	824					transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CTCTGTTTTTGGATCTTTTGA	0.463													9	175					0.000673444	0.00655963	0.000673444	1	0
C5orf15	56951	broad.mit.edu	37	5	133304218	133304218	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:133304218C>G	uc003kyo.2	-	1	189	c.58G>C	c.(58-60)GGG>CGG	p.G20R		NM_020199	NP_064584	Q8NC54	KCT2_HUMAN	keratinocytes associated transmembrane protein 2	20						integral to membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.00806)|Kidney(363;0.02)			ATGGCCGACCCGGGCAGCAGT	0.672													4	18					0	0	3.59834e-05	0	0
CDKL3	51265	broad.mit.edu	37	5	133634401	133634401	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:133634401C>G	uc003kzf.3	-	13	1839	c.1720G>C	c.(1720-1722)GGT>CGT	p.G574R	CDKL3_uc011cxm.1_Intron|CDKL3_uc011cxn.1_Intron|CDKL3_uc010jdw.2_Intron|CDKL3_uc011cxo.1_Intron|CDKL3_uc011cxp.1_Intron|CDKL3_uc011cxq.1_3'UTR	NM_001113575	NP_001107047	Q8IVW4	CDKL3_HUMAN	cyclin-dependent kinase-like 3 isoform 1	574						cytoplasm	ATP binding|cyclin-dependent protein kinase activity			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CCATCTCCACCCTAAAATTAG	0.333													4	190					0	0	3.59834e-05	0	0
UBE2B	7320	broad.mit.edu	37	5	133725924	133725924	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:133725924G>C	uc003kzh.2	+	6	756	c.339G>C	c.(337-339)CTG>CTC	p.L113L		NM_003337	NP_003328	P63146	UBE2B_HUMAN	ubiquitin-conjugating enzyme E2B	113					canonical Wnt receptor signaling pathway|histone H2A ubiquitination|negative regulation of cAMP-mediated signaling|postreplication repair|proteasomal ubiquitin-dependent protein catabolic process|protein autoubiquitination|protein K11-linked ubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein monoubiquitination|protein stabilization|response to drug|response to UV	cytoplasm|plasma membrane|replication fork	ATP binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity			lung(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AGTCTCTGCTGGATGAACCGA	0.388								Direct_reversal_of_damage|Rad6_pathway					4	82					0	0	3.59834e-05	0	0
SEC24A	10802	broad.mit.edu	37	5	134044442	134044443	+	Missense_Mutation	DNP	GG	TC	TC			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:134044442_134044443GG>TC	uc003kzs.2	+	18	2879_2880	c.2591_2592GG>TC	c.(2590-2592)CGG>CTC	p.R864L	SEC24A_uc011cxu.1_Missense_Mutation_p.R628L	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A	864					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AGTGACGCTCGGGATGCTCTAG	0.455													9	185					0	0	6.4e-05	0	0
C5orf24	134553	broad.mit.edu	37	5	134190668	134190668	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:134190668G>T	uc003kzx.2	+	2	139	c.78G>T	c.(76-78)ATG>ATT	p.M26I	C5orf24_uc003kzy.3_Missense_Mutation_p.M26I|C5orf24_uc003kzz.2_Missense_Mutation_p.M26I	NM_152409	NP_689622	Q7Z6I8	CE024_HUMAN	hypothetical protein LOC134553	26											0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AAGATGCCATGAGAGCTGCTG	0.448													9	233					0.000274275	0.00290969	0.000274275	1	0
TRPC7	57113	broad.mit.edu	37	5	135587525	135587525	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:135587525C>G	uc003lbn.1	-	5	1391	c.1388G>C	c.(1387-1389)CGG>CCG	p.R463P	TRPC7_uc010jef.1_Missense_Mutation_p.R400P|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.R394P|TRPC7_uc010jei.1_Missense_Mutation_p.R339P|TRPC7_uc010jej.1_Missense_Mutation_p.R15P	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	464	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CACGTACTCCCGTGGCCCCTC	0.547													4	56					0	0	0.000157383	0	0
PKD2L2	27039	broad.mit.edu	37	5	137271551	137271551	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:137271551G>A	uc003lby.2	+	13	1793	c.1737G>A	c.(1735-1737)ATG>ATA	p.M579I	PKD2L2_uc003lbw.1_Missense_Mutation_p.M579I|PKD2L2_uc003lbx.2_Missense_Mutation_p.M478I|PKD2L2_uc011cyi.1_Missense_Mutation_p.M187I	NM_014386	NP_055201	Q9NZM6	PK2L2_HUMAN	polycystic kidney disease 2-like 2	579	Cytoplasmic (Potential).					integral to membrane	calcium ion binding|ion channel activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			ATTATTCTATGGAAATTCAAG	0.388													30	144					0	0	0.00111076	0	0
KIF20A	10112	broad.mit.edu	37	5	137521267	137521267	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:137521267C>A	uc003lcj.2	+	16	2489	c.1993C>A	c.(1993-1995)CAT>AAT	p.H665N	KIF20A_uc011cyo.1_Missense_Mutation_p.H647N	NM_005733	NP_005724	O95235	KI20A_HUMAN	kinesin family member 20A	665	Potential.				cytokinesis|M phase of mitotic cell cycle|microtubule-based movement|protein transport|vesicle-mediated transport	Golgi apparatus|microtubule|nucleoplasm	ATP binding|microtubule motor activity|protein binding|transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			GTCAGTGGCCCATCAGCAATC	0.512													8	114					0.000274275	0.00290969	0.000274275	1	0
CDC23	8697	broad.mit.edu	37	5	137527989	137527989	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:137527989G>T	uc003lcl.2	-	11	1286	c.1255C>A	c.(1255-1257)CTT>ATT	p.L419I		NM_004661	NP_004652	Q9UJX2	CDC23_HUMAN	cell division cycle protein 23	419	TPR 7.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G1 phase of mitotic cell cycle|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase plate congression|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|regulation of exit from mitosis	anaphase-promoting complex|cytosol|nucleoplasm	binding|ubiquitin-protein ligase activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TAATAATAAAGGCAGTAAAAT	0.438													16	76					5.01169e-05	0.000591401	0.000566183	1	0
WDR55	54853	broad.mit.edu	37	5	140048015	140048015	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140048015C>G	uc003lgr.3	+	3	422	c.308C>G	c.(307-309)TCC>TGC	p.S103C	WDR55_uc011czl.1_5'Flank	NM_017706	NP_060176	Q9H6Y2	WDR55_HUMAN	WD repeat domain 55	103	WD 2.				rRNA processing	cytoplasm|nucleolus				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTACTGTCTCCAAGGACAAA	0.527													4	173					0	0	3.59834e-05	0	0
HARS	3035	broad.mit.edu	37	5	140056939	140056939	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140056939G>C	uc003lgv.2	-	8	878	c.796C>G	c.(796-798)CGC>GGC	p.R266G	HARS_uc003lgu.2_Missense_Mutation_p.R197G|HARS_uc011czm.1_Missense_Mutation_p.R226G|HARS_uc003lgw.2_Missense_Mutation_p.R246G|HARS_uc011czn.1_Missense_Mutation_p.R206G|HARS_uc010jfu.2_Missense_Mutation_p.R266G|HARS_uc011czo.1_Missense_Mutation_p.R192G|HARS_uc011czp.1_Missense_Mutation_p.R152G|HARS_uc011czq.1_Missense_Mutation_p.R156G	NM_002109	NP_002100	P12081	SYHC_HUMAN	histidyl-tRNA synthetase	266					histidyl-tRNA aminoacylation	cytosol	ATP binding|histidine-tRNA ligase activity			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		L-Histidine(DB00117)	TCCCCAATGCGGTCAGCCACC	0.572													5	135					0	0	0.000274275	0	0
PCDHA1	56147	broad.mit.edu	37	5	140166993	140166993	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140166993C>T	uc003lhb.2	+	1	1118	c.1118C>T	c.(1117-1119)ACC>ATC	p.T373I	PCDHA1_uc003lha.2_Missense_Mutation_p.T373I|PCDHA1_uc003lgz.2_Missense_Mutation_p.T373I	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	373	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCCTCATCACCGTGTCTGAC	0.532													16	84					0	0	0.000422831	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181269	140181269	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140181269G>T	uc003lhf.2	+	1	487	c.487G>T	c.(487-489)GGA>TGA	p.G163*	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Nonsense_Mutation_p.G163*	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	163	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCAGATATCGGAACAAATTC	0.428													6	157					0.000157383	0.00173811	0.000157383	1	0
PCDHA5	56143	broad.mit.edu	37	5	140202275	140202275	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140202275G>A	uc003lhl.2	+	1	915	c.915G>A	c.(913-915)GGG>GGA	p.G305G	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.G305G|PCDHA5_uc003lhj.1_Silent_p.G305G	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	305	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGTTAACGGGGAACTGGATT	0.294													17	129					0	0	0.000422831	0	0
PCDHA6	56142	broad.mit.edu	37	5	140209531	140209531	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140209531C>G	uc003lho.2	+	1	1882	c.1855C>G	c.(1855-1857)CGC>GGC	p.R619G	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc011dab.1_Missense_Mutation_p.R619G	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	619	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGCAGCGCTCGCTTCCCGTT	0.662													3	106					0	0	0.00024832	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348548	140348548	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140348548C>G	uc003lii.2	+	1	2437	c.2197C>G	c.(2197-2199)CGC>GGC	p.R733G	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.R733G	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	733	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAAGTGCTACCGCTACACTGC	0.408													4	121					0	0	3.59834e-05	0	0
PCDHB2	56133	broad.mit.edu	37	5	140476430	140476430	+	Missense_Mutation	SNP	G	A	A	rs61742377	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140476430G>A	uc003lil.2	+	1	2194	c.2056G>A	c.(2056-2058)GAC>AAC	p.D686N	PCDHB2_uc003lim.1_Missense_Mutation_p.D347N	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	686	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGCCCAGGCCGACTTGCTCAC	0.697													26	184					0	0	0.000184323	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480503	140480503	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140480503G>A	uc003lio.2	+	1	270	c.270G>A	c.(268-270)TTG>TTA	p.L90L	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	90	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATGAGAAATTGGACCGGGAGG	0.488													16	143					0	0	0.000566183	0	0
PCDHB4	56131	broad.mit.edu	37	5	140501710	140501710	+	Missense_Mutation	SNP	G	T	T	rs77188774	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140501710G>T	uc003lip.1	+	1	130	c.130G>T	c.(130-132)GTA>TTA	p.V44L		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	44	Cadherin 1.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGGCTCCTTTGTAGCCCATCT	0.552													6	111					0.000442599	0.00445669	0.000442599	1	0
PCDHB6	56130	broad.mit.edu	37	5	140530330	140530331	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140530330_140530331CG>AT	uc003lir.2	+	1	492_493	c.492_493CG>AT	c.(490-495)AACGGC>AAATGC	p.164_165NG>KC	PCDHB6_uc011dah.1_Missense_Mutation_p.28_29NG>KC	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	164_165	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCGGCAGCAACGGCCTTCAGAG	0.49													6	235					0	0	6.4e-05	0	0
PCDHB16	57717	broad.mit.edu	37	5	140562215	140562215	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140562215C>A	uc003liv.2	+	1	1236	c.81C>A	c.(79-81)GGC>GGA	p.G27G	PCDHB16_uc010jfw.1_Intron	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	27					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGGGGCGGGCGCCGAGTTGG	0.488													6	183					0.000157383	0.00173811	0.000157383	1	0
PCDHB11	56125	broad.mit.edu	37	5	140580065	140580066	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140580065_140580066CC>AA	uc003liy.2	+	1	718_719	c.718_719CC>AA	c.(718-720)CCT>AAT	p.P240N	PCDHB11_uc011daj.1_Intron	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	240	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGACAACTCCCCTGAATTTGAG	0.5													9	206					0	0	6.4e-05	0	0
PCDHB12	56124	broad.mit.edu	37	5	140588603	140588603	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140588603G>T	uc003liz.2	+	1	313	c.124G>T	c.(124-126)GGG>TGG	p.G42W	PCDHB12_uc011dak.1_5'UTR	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	42	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATTGCAGAGCGGGAGCTTTGT	0.498													7	164					0.000442599	0.00445669	0.000442599	1	0
TAF7	6879	broad.mit.edu	37	5	140699074	140699074	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140699074G>C	uc003ljg.2	-	1	1278	c.538C>G	c.(538-540)CGG>GGG	p.R180G		NM_005642	NP_005633	Q15545	TAF7_HUMAN	TATA box-binding protein-associated factor 2F	180					negative regulation of histone acetylation|negative regulation of protein kinase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|spermine transport|transcription initiation from RNA polymerase II promoter	Golgi apparatus|MLL1 complex|transcription factor TFIID complex|transcription factor TFTC complex	histone acetyltransferase binding|thyroid hormone receptor binding|transcription coactivator activity|transcription regulatory region DNA binding|vitamin D receptor binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTTCCCACCGAGTACTAACA	0.438													5	196					0	0	0.000602214	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140712378	140712378	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140712378C>T	uc003lji.1	+	1	2127	c.2127C>T	c.(2125-2127)ATC>ATT	p.I709I	PCDHGA1_uc011dan.1_Silent_p.I709I	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	709	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTTCGTCATCGTGCTGCTGG	0.667													34	137					0	0	0.00058488	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140719684	140719684	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140719684C>A	uc003ljk.1	+	1	1331	c.1146C>A	c.(1144-1146)ACC>ACA	p.T382T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.T382T	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	382	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGCATTCACCACCTGTTCAC	0.438													8	193					0.000978159	0.00917326	0.000978159	1	0
PCDHGA2	56113	broad.mit.edu	37	5	140719905	140719905	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140719905C>T	uc003ljk.1	+	1	1552	c.1367C>T	c.(1366-1368)TCC>TTC	p.S456F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.S456F	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	456	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCCGCACATCCTACTCCACC	0.557													16	155					0	0	0.000308642	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140745299	140745299	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140745299G>A	uc003lju.1	+	1	1402	c.1402G>A	c.(1402-1404)GGT>AGT	p.G468S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Missense_Mutation_p.G468S	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	468	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding	p.G468G(1)		ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAATCCCAGAGGTGTCTCTAT	0.537													17	196					0	0	0.000422831	0	0
DIAPH1	1729	broad.mit.edu	37	5	140951530	140951530	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:140951530G>A	uc003llb.3	-	17	2577	c.2436C>T	c.(2434-2436)TTC>TTT	p.F812F	DIAPH1_uc003llc.3_Silent_p.F803F|DIAPH1_uc010jgc.1_Silent_p.F251F	NM_005219	NP_005210	O60610	DIAP1_HUMAN	diaphanous 1 isoform 1	812	FH2.				regulation of microtubule-based process|sensory perception of sound	cytoplasm|cytoskeleton|ruffle membrane	actin binding|receptor binding|Rho GTPase binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAAGTTTGGCGAAAAGTTCAT	0.473													31	135					0	0	0.000953801	0	0
HDAC3	8841	broad.mit.edu	37	5	141004927	141004927	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:141004927C>A	uc003llf.2	-	14	1131	c.1065G>T	c.(1063-1065)CTG>CTT	p.L355L	HDAC3_uc003lle.1_Silent_p.L298L	NM_003883	NP_003874	O15379	HDAC3_HUMAN	histone deacetylase 3	355					anti-apoptosis|cellular lipid metabolic process|negative regulation of cell cycle|negative regulation of JNK cascade|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|spindle assembly|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|spindle microtubule|transcriptional repressor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription corepressor activity|transcription factor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Vorinostat(DB02546)	GGATCTGGTCCAGATACTGGT	0.478													8	160					0.000978159	0.00917326	0.000978159	1	0
PCDH1	5097	broad.mit.edu	37	5	141243238	141243238	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:141243238G>A	uc003llq.2	-	3	2775	c.2658C>T	c.(2656-2658)TAC>TAT	p.Y886Y	PCDH1_uc003llp.2_Silent_p.Y886Y|PCDH1_uc011dbf.1_Silent_p.Y864Y	NM_002587	NP_002578	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 1 precursor	886	Cytoplasmic (Potential).				cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		TACCAGCCTGGTAACCACTTT	0.577													7	158					0	0	8.12818e-05	0	0
ARHGAP26	23092	broad.mit.edu	37	5	142500586	142500586	+	Silent	SNP	G	C	C	rs35015063	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:142500586G>C	uc011dbj.1	+	18	1607	c.1572G>C	c.(1570-1572)ACG>ACC	p.T524T	ARHGAP26_uc003lmt.2_Silent_p.T524T|ARHGAP26_uc003lmw.2_Silent_p.T524T	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	524	Rho-GAP.				actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATTTGATGACGGTGGCAAACC	0.463													4	154					0	0	0.000157383	0	0
SH3RF2	153769	broad.mit.edu	37	5	145435594	145435594	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:145435594G>C	uc003lnt.2	+	8	1611	c.1373G>C	c.(1372-1374)TGG>TCG	p.W458S	SH3RF2_uc011dbl.1_Missense_Mutation_p.W458S|SH3RF2_uc011dbm.1_5'UTR|SH3RF2_uc003lnu.2_5'UTR|SH3RF2_uc011dbn.1_5'UTR	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	458							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TACACCACATGGACGTTATCC	0.463													5	286					0	0	3.59834e-05	0	0
RBM27	54439	broad.mit.edu	37	5	145664215	145664215	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:145664215C>G	uc003lnz.3	+	20	3185	c.3019C>G	c.(3019-3021)CGT>GGT	p.R1007G		NM_018989	NP_061862	Q9P2N5	RBM27_HUMAN	RNA binding motif protein 27	1007					mRNA processing	cytoplasm|nuclear speck	nucleotide binding|RNA binding|zinc ion binding			central_nervous_system(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATTTAAAGACCGTCGGCTACA	0.378													5	164					0	0	8.12818e-05	0	0
TCERG1	10915	broad.mit.edu	37	5	145843354	145843354	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:145843354C>T	uc003lob.2	+	5	1173	c.1133C>T	c.(1132-1134)CCA>CTA	p.P378L	TCERG1_uc003loc.2_Missense_Mutation_p.P378L|TCERG1_uc011dbt.1_Missense_Mutation_p.P378L	NM_006706	NP_006697	O14776	TCRG1_HUMAN	transcription elongation regulator 1 isoform 1	378	Pro-rich.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			ovary(1)|skin(1)	2		Lung NSC(249;0.00188)|all_lung(500;0.00307)|all_neural(839;0.0424)|Breast(839;0.0743)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATTCCACTTCCAGGTAAACCA	0.428													6	191					0	0	0.000157383	0	0
DPYSL3	1809	broad.mit.edu	37	5	146781108	146781108	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:146781108C>G	uc003lon.1	-	9	1073	c.963G>C	c.(961-963)CTG>CTC	p.L321L	DPYSL3_uc003loo.2_Silent_p.L435L	NM_001387	NP_001378	Q14195	DPYL3_HUMAN	dihydropyrimidinase-like 3	321					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol|growth cone	dihydropyrimidinase activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAACCTGGCCAGCAAGGAGT	0.547													4	31					0	0	0.000157383	0	0
SPINK13	153218	broad.mit.edu	37	5	147661769	147661769	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:147661769G>C	uc003lpc.2	+	4	273	c.211G>C	c.(211-213)GAG>CAG	p.E71Q	uc003lpb.1_Intron|SPINK13_uc010jgt.2_RNA	NM_001040129	NP_001035218	Q1W4C9	ISK13_HUMAN	serine PI Kazal type 5-like 3 precursor	71	Kazal-like.					extracellular region	serine-type endopeptidase inhibitor activity				0						TTTCCAGAATGAGTGTttctt	0.249													3	91					0	0	0.000602214	0	0
HTR4	3360	broad.mit.edu	37	5	147830817	147830817	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:147830817C>G	uc003lpj.1	-	7	1259	c.1095G>C	c.(1093-1095)AGG>AGC	p.R365S	HTR4_uc010jgu.1_RNA|HTR4_uc003lpi.1_3'UTR	NM_001040169	NP_001035259	Q13639	5HT4R_HUMAN	serotonin 5-HT4 receptor isoform a	Error:Variant_position_missing_in_Q13639_after_alignment					G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cell proliferation	endosome|integral to plasma membrane|membrane fraction	serotonin receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Cisapride(DB00604)|Rizatriptan(DB00953)|Tegaserod(DB01079)|Zolmitriptan(DB00315)	GATGATGTCCCCTGTGCAGAA	0.478													4	156					0	0	3.59834e-05	0	0
PCYOX1L	78991	broad.mit.edu	37	5	148747771	148747771	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:148747771G>T	uc003lqk.2	+	6	1101	c.1039G>T	c.(1039-1041)GGT>TGT	p.G347C	PCYOX1L_uc003lql.2_Missense_Mutation_p.G330C|PCYOX1L_uc010jgz.2_Missense_Mutation_p.G271C|PCYOX1L_uc003lqm.2_Missense_Mutation_p.G229C|PCYOX1L_uc003lqn.2_Missense_Mutation_p.G257C	NM_024028	NP_076933	Q8NBM8	PCYXL_HUMAN	prenylcysteine oxidase 1 like precursor	347					prenylcysteine catabolic process	extracellular region	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCCTACTTCGGTTTCCCAGA	0.547											OREG0016912	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	184					0.000673444	0.00655963	0.000673444	1	0
IL17B	27190	broad.mit.edu	37	5	148754058	148754058	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:148754058C>G	uc003lqo.2	-	3	467	c.417G>C	c.(415-417)GTG>GTC	p.V139V		NM_014443	NP_055258	Q9UHF5	IL17B_HUMAN	interleukin 17B precursor	139					cell-cell signaling|immune response|inflammatory response	extracellular space	cytokine activity|signal transducer activity			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCGGCACGCTCACCATGCTGC	0.697													3	62					0	0	0.000602214	0	0
PDGFRB	5159	broad.mit.edu	37	5	149497307	149497307	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:149497307G>A	uc003lro.2	-	22	3480	c.3011C>T	c.(3010-3012)ACC>ATC	p.T1004I	PDGFRB_uc010jhd.2_Missense_Mutation_p.T843I	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	1004	Cytoplasmic (Potential).				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GACGGAGCTGGTGTCCAGGGG	0.617			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								11	79					0	0	0.000673444	0	0
TCOF1	6949	broad.mit.edu	37	5	149754676	149754676	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:149754676G>C	uc003lry.2	+	10	1546	c.1438G>C	c.(1438-1440)GAG>CAG	p.E480Q	TCOF1_uc003lrw.2_Missense_Mutation_p.E480Q|TCOF1_uc011dch.1_Missense_Mutation_p.E480Q|TCOF1_uc003lrz.2_Missense_Mutation_p.E480Q|TCOF1_uc003lrx.2_Missense_Mutation_p.E403Q|TCOF1_uc003lsa.2_Missense_Mutation_p.E403Q|TCOF1_uc011dci.1_5'Flank	NM_001135243	NP_001128715	Q13428	TCOF_HUMAN	Treacher Collins-Franceschetti syndrome 1	480					skeletal system development	nucleolus	protein binding|transporter activity			ovary(2)|large_intestine(1)	3		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AAGCAGCAGCGAGGAGTCAGA	0.632													3	49					0	0	0.000602214	0	0
NDST1	3340	broad.mit.edu	37	5	149931366	149931366	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:149931366C>A	uc003lsk.3	+	14	2980	c.2478C>A	c.(2476-2478)ACC>ACA	p.T826T	NDST1_uc011dcj.1_Silent_p.T769T	NM_001543	NP_001534	P52848	NDST1_HUMAN	N-deacetylase/N-sulfotransferase (heparan	826	Heparan sulfate N-sulfotransferase 1.|Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|inflammatory response	Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			breast(1)|skin(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GAGGAAAAACCAAGTGTCTGG	0.512													8	106					0.000978159	0.00917326	0.000978159	1	0
ANXA6	309	broad.mit.edu	37	5	150516837	150516837	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:150516837G>C	uc003ltl.1	-	6	516	c.364C>G	c.(364-366)CGG>GGG	p.R122G	ANXA6_uc011dcp.1_Missense_Mutation_p.R90G|ANXA6_uc003ltm.1_Missense_Mutation_p.R122G|ANXA6_uc003ltn.1_Intron|ANXA6_uc003lto.1_Intron	NM_001155	NP_001146	P08133	ANXA6_HUMAN	annexin VI isoform 1	122	Annexin 2.					melanosome	calcium ion binding|calcium-dependent phospholipid binding|protein binding				0		Medulloblastoma(196;0.0912)|all_hematologic(541;0.208)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCATTGGTCCGGGAAGCCAAG	0.522													3	52					0	0	3.59834e-05	0	0
GALNT10	55568	broad.mit.edu	37	5	153765879	153765879	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:153765879C>G	uc003lvh.2	+	7	1077	c.945C>G	c.(943-945)CCC>CCG	p.P315P	GALNT10_uc003lvg.1_Silent_p.P315P|GALNT10_uc010jic.2_RNA|GALNT10_uc010jid.2_Silent_p.P156P	NM_198321	NP_938080	Q86SR1	GLT10_HUMAN	GalNAc transferase 10 isoform a	315	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)|all_hematologic(541;0.21)	Kidney(363;8.21e-05)|KIRC - Kidney renal clear cell carcinoma(527;0.000577)			ACAGGTCTCCCGTGATGGCCG	0.582													4	148					0	0	0.000157383	0	0
MRPL22	29093	broad.mit.edu	37	5	154339539	154339539	+	Splice_Site	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:154339539G>T	uc003lvy.3	+	6	378	c.340_splice	c.e6-1	p.V114_splice	MRPL22_uc003lvz.3_Splice_Site_p.V34_splice	NM_014180	NP_054899	Q9NWU5	RM22_HUMAN	mitochondrial ribosomal protein L22 isoform a						translation	large ribosomal subunit|mitochondrion	structural constituent of ribosome				0	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TCTTATTTAAGGTTCTCTTAG	0.318													6	102					0.000442599	0.00445669	0.000442599	1	0
KIF4B	285643	broad.mit.edu	37	5	154394324	154394324	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:154394324G>A	uc010jih.1	+	1	1065	c.905G>A	c.(904-906)GGA>GAA	p.G302E		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	302	Kinesin-motor.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GATTCTCTAGGAGGTAACAGC	0.448													59	160					0	0	0.000781405	0	0
TIMD4	91937	broad.mit.edu	37	5	156378677	156378677	+	Silent	SNP	G	T	T	rs150170341		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:156378677G>T	uc003lwh.2	-	3	582	c.525C>A	c.(523-525)CCC>CCA	p.P175P	TIMD4_uc010jii.2_Silent_p.P175P	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	175	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTGTGAGATCGGGTGTGGTCA	0.542													7	317					0.000673444	0.00655963	0.000673444	1	0
MED7	9443	broad.mit.edu	37	5	156565997	156565997	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:156565997G>T	uc010jik.2	-	2	838	c.446C>A	c.(445-447)ACA>AAA	p.T149K	MED7_uc003lwm.3_Missense_Mutation_p.T149K	NM_001100816	NP_001094286	O43513	MED7_HUMAN	mediator complex subunit 7	149					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex|transcription factor complex	protein binding|transcription coactivator activity				0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCTCTCAGCTGTTTCAAGCCG	0.433													9	524					0.000151284	0.00173001	0.000151284	1	0
CYFIP2	26999	broad.mit.edu	37	5	156738737	156738737	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:156738737G>C	uc003lwq.2	+	13	1196	c.1058G>C	c.(1057-1059)CGG>CCG	p.R353P	CYFIP2_uc011ddn.1_Missense_Mutation_p.R327P|CYFIP2_uc011ddo.1_Missense_Mutation_p.R157P|CYFIP2_uc003lwr.2_Missense_Mutation_p.R353P|CYFIP2_uc003lws.2_Missense_Mutation_p.R353P|CYFIP2_uc003lwt.2_Missense_Mutation_p.R231P|CYFIP2_uc011ddp.1_Missense_Mutation_p.R87P	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	353					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTTCAGATCCGGGATGACCAC	0.607													5	204					0	0	0.000157383	0	0
NIPAL4	348938	broad.mit.edu	37	5	156899403	156899403	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:156899403C>A	uc003lwx.3	+	6	952	c.836C>A	c.(835-837)CCA>CAA	p.P279Q	ADAM19_uc003lww.1_Intron|NIPAL4_uc011ddq.1_Missense_Mutation_p.P260Q	NM_001099287	NP_001092757	Q0D2K0	NIPA4_HUMAN	ichthyin protein	279	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						GTCATTGCCCCACGTTACGGG	0.527											OREG0016979	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	206					4.3838e-07	5.65166e-06	0.000151284	1	0
SOX30	11063	broad.mit.edu	37	5	157073783	157073783	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:157073783G>C	uc003lxb.1	-	3	1591	c.1249C>G	c.(1249-1251)CCT>GCT	p.P417A	SOX30_uc003lxc.1_Missense_Mutation_p.P417A|SOX30_uc011dds.1_Missense_Mutation_p.P112A	NM_178424	NP_848511	O94993	SOX30_HUMAN	SRY (sex determining region Y)-box 30 isoform a	417					regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|response to corticosteroid stimulus|transcription, DNA-dependent	nucleus|nucleus	sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)|central_nervous_system(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ACACTTAGAGGGAATCGTTTT	0.378													4	87					0	0	0.00024832	0	0
RNF145	153830	broad.mit.edu	37	5	158603839	158603839	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:158603839A>G	uc003lxp.2	-	5	735	c.422T>C	c.(421-423)ATG>ACG	p.M141T	RNF145_uc011ddy.1_Missense_Mutation_p.M155T|RNF145_uc003lxo.1_Missense_Mutation_p.M169T|RNF145_uc011ddz.1_Missense_Mutation_p.M158T|RNF145_uc010jiq.1_Missense_Mutation_p.M171T|RNF145_uc011dea.1_Missense_Mutation_p.M157T	NM_144726	NP_653327	Q96MT1	RN145_HUMAN	ring finger protein 145	141	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0523)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CTTTGTTTTCATGACACAGGA	0.363													7	32					0	0	0.000274275	0	0
SLU7	10569	broad.mit.edu	37	5	159841344	159841344	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:159841344G>T	uc003lyg.2	-	3	461	c.306C>A	c.(304-306)TAC>TAA	p.Y102*	SLU7_uc003lyh.1_Nonsense_Mutation_p.Y102*|SLU7_uc003lyi.1_Nonsense_Mutation_p.Y102*	NM_006425	NP_006416	O95391	SLU7_HUMAN	step II splicing factor SLU7	102					alternative nuclear mRNA splicing, via spliceosome|nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|cytoplasm|nuclear speck|small nuclear ribonucleoprotein complex	pre-mRNA 3'-splice site binding|second spliceosomal transesterification activity|zinc ion binding			ovary(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CACCCCTCTTGTACCATTCTC	0.363													7	301					1.76689e-08	2.32768e-07	0.000442599	1	0
GABRB2	2561	broad.mit.edu	37	5	160886671	160886671	+	Missense_Mutation	SNP	C	T	T	rs78354289		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:160886671C>T	uc003lys.1	-	5	635	c.417G>A	c.(415-417)ATG>ATA	p.M139I	GABRB2_uc011deh.1_Intron|GABRB2_uc003lyr.1_Missense_Mutation_p.M139I|GABRB2_uc003lyt.1_Missense_Mutation_p.M139I|GABRB2_uc010jiu.1_Missense_Mutation_p.M76I|GABRB2_uc011dei.1_Missense_Mutation_p.M139I	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	139	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GCAGGCGAATCATGCGGTTCT	0.448													9	50					0	0	0.00010058	0	0
GABRA6	2559	broad.mit.edu	37	5	161117342	161117342	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:161117342C>G	uc003lyu.2	+	7	1147	c.809C>G	c.(808-810)CCA>CGA	p.P270R	GABRA6_uc003lyv.2_Missense_Mutation_p.P41R	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	270	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GAGTCCGTCCCAGCAAGAACT	0.383										TCGA Ovarian(5;0.080)			5	145					0	0	0.000274275	0	0
GABRG2	2566	broad.mit.edu	37	5	161576278	161576278	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:161576278C>A	uc003lyz.3	+	8	1445	c.1087C>A	c.(1087-1089)CGG>AGG	p.R363R	GABRG2_uc010jjc.2_Silent_p.R403R|GABRG2_uc003lyy.3_Silent_p.R363R|GABRG2_uc011dej.1_Silent_p.R268R	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	363	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		TGTCAGCAACCGGAAACCAAG	0.378													8	77					9.31168e-06	0.000114714	0.000151284	1	0
MAT2B	27430	broad.mit.edu	37	5	162943659	162943659	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:162943659C>G	uc003lzk.2	+	5	770	c.662C>G	c.(661-663)CCC>CGC	p.P221R	MAT2B_uc003lzj.2_Missense_Mutation_p.P210R|MAT2B_uc003lzl.1_Missense_Mutation_p.P221R|MAT2B_uc003lzm.2_5'Flank	NM_013283	NP_037415	Q9NZL9	MAT2B_HUMAN	methionine adenosyltransferase II, beta isoform	221					extracellular polysaccharide biosynthetic process|methylation|S-adenosylmethionine biosynthetic process|xenobiotic metabolic process	cytosol|methionine adenosyltransferase complex|nucleus	dTDP-4-dehydrorhamnose reductase activity|methionine adenosyltransferase regulator activity|protein binding			upper_aerodigestive_tract(1)	1	Renal(175;0.000281)	Medulloblastoma(196;0.0208)|all_neural(177;0.0765)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.027)|OV - Ovarian serous cystadenocarcinoma(192;0.0406)|Epithelial(171;0.0797)	L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	CAGAGGTTCCCCACACATGTC	0.483													4	84					0	0	0.000157383	0	0
ODZ2	57451	broad.mit.edu	37	5	167517771	167517771	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:167517771C>G	uc010jjd.2	+	8	1708	c.1708C>G	c.(1708-1710)CTA>GTA	p.L570V	ODZ2_uc003lzq.2_Missense_Mutation_p.L449V|ODZ2_uc003lzr.3_Missense_Mutation_p.L338V|uc003lzs.1_Intron	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TACTGTTGTCCTAGGTAGGTG	0.473													4	114					0	0	0.00024832	0	0
ODZ2	57451	broad.mit.edu	37	5	167687348	167687348	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:167687348C>G	uc010jjd.2	+	28	7466	c.7466C>G	c.(7465-7467)CCG>CGG	p.P2489R	ODZ2_uc003lzr.3_Missense_Mutation_p.P2259R|ODZ2_uc003lzt.3_Missense_Mutation_p.P1862R|ODZ2_uc010jje.2_Missense_Mutation_p.P1753R	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CCTGGCTTCCCGAGAGCCAAA	0.423													5	141					0	0	3.59834e-05	0	0
PANK3	79646	broad.mit.edu	37	5	167990955	167990955	+	Missense_Mutation	SNP	G	T	T	rs146047826	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:167990955G>T	uc003lzz.1	-	4	1051	c.751C>A	c.(751-753)CGT>AGT	p.R251S	uc003maa.1_5'Flank|MIR103-1_hsa-mir-103-1|MI0000109_5'Flank	NM_024594	NP_078870	Q9H999	PANK3_HUMAN	pantothenate kinase 3	251					coenzyme A biosynthetic process	cytoplasm|nucleus	ATP binding|pantothenate kinase activity			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0441)|all_lung(126;0.0909)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0989)|OV - Ovarian serous cystadenocarcinoma(192;0.147)|Epithelial(171;0.188)		TAAATATCACGGACCAGCTTG	0.393													6	213					0.000442599	0.00445669	0.000442599	1	0
MIR218-2	407001	broad.mit.edu	37	5	168195220	168195220	+	RNA	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:168195220G>C	hsa-mir-218-2|MI0000295	-			c.41G>C			SLIT3_uc003mab.2_Intron|SLIT3_uc010jjg.2_Intron|uc010jjh.2_RNA																	0						TCCACCACATGGTTAGATCAA	0.602													3	18					0	0	6.4e-05	0	0
NPM1	4869	broad.mit.edu	37	5	170834773	170834773	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:170834773C>G	uc011dex.1	+	11	976	c.841C>G	c.(841-843)CAA>GAA	p.Q281E	NPM1_uc003mbi.2_Missense_Mutation_p.Q281E|NPM1_uc003mbj.2_Missense_Mutation_p.Q252E	NM_002520	NP_002511	P06748	NPM_HUMAN	nucleophosmin 1 isoform 1	281	Required for nucleolar localization.				anti-apoptosis|cell aging|CenH3-containing nucleosome assembly at centromere|centrosome cycle|DNA repair|interspecies interaction between organisms|intracellular protein transport|negative regulation of cell proliferation|negative regulation of centrosome duplication|nucleocytoplasmic transport|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|regulation of endodeoxyribonuclease activity|regulation of endoribonuclease activity|ribosome assembly|signal transduction	nucleolus|nucleoplasm|ribonucleoprotein complex|spindle pole centrosome	histone binding|NF-kappaB binding|protein binding|protein heterodimerization activity|protein homodimerization activity|ribosomal large subunit binding|ribosomal small subunit binding|RNA binding|Tat protein binding|transcription coactivator activity|unfolded protein binding	p.D280_E282del(1)	NPM1/ALK(632)	haematopoietic_and_lymphoid_tissue(3109)|skin(1)	3110	Renal(175;0.000159)|Lung NSC(126;0.00576)|all_lung(126;0.00963)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GATGACTGACCAAGAGGTAAC	0.358			T|F 	ALK|RARA|MLF1	NHL|APL|AML								4	62					0	0	3.59834e-05	0	0
ATP6V0E1	8992	broad.mit.edu	37	5	172447243	172447243	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:172447243G>T	uc003mcd.1	+	3	256	c.155G>T	c.(154-156)TGG>TTG	p.W52L	SNORA74B_uc003mce.1_5'Flank	NM_003945	NP_003936	O15342	VA0E1_HUMAN	ATPase, H+ transporting, lysosomal 9kDa, V0	52	Helical; (Potential).				ATP hydrolysis coupled proton transport|cell growth|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport|vacuolar acidification	endosome membrane|integral to membrane|membrane fraction|proton-transporting V-type ATPase, V0 domain|vacuole	proton-transporting ATPase activity, rotational mechanism				0	Renal(175;0.000159)|Lung NSC(126;0.00223)|all_lung(126;0.00391)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TCTTTTAGTTGGCTGATTGCA	0.403													6	69					3.59834e-05	0.000429	3.59834e-05	1	0
KIAA1191	57179	broad.mit.edu	37	5	175774960	175774960	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:175774960G>A	uc003mdw.2	-	8	1045	c.673C>T	c.(673-675)CTC>TTC	p.L225F	KIAA1191_uc003mdx.2_Missense_Mutation_p.L206F|KIAA1191_uc003mdy.2_Missense_Mutation_p.L225F|KIAA1191_uc003mea.2_Missense_Mutation_p.L18F|KIAA1191_uc003mdz.2_RNA	NM_020444	NP_065177	Q96A73	K1191_HUMAN	hypothetical protein LOC57179 isoform a	225				L -> P (in Ref. 3; CAG33612).			protein binding			ovary(1)	1	all_cancers(89;0.00575)|Renal(175;0.000269)|Lung NSC(126;0.0105)|all_lung(126;0.0168)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.101)		GGTCCAAAGAGGCTCCACTTA	0.483													7	151					0	0	0.000274275	0	0
UIMC1	51720	broad.mit.edu	37	5	176378527	176378527	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:176378527G>T	uc011dfp.1	-	9	1558	c.1391C>A	c.(1390-1392)CCA>CAA	p.P464Q	UIMC1_uc003mfc.1_Missense_Mutation_p.P341Q|UIMC1_uc003mfd.1_Missense_Mutation_p.P94Q|UIMC1_uc003mfg.1_Missense_Mutation_p.P183Q|UIMC1_uc003mff.1_Missense_Mutation_p.P94Q	NM_016290	NP_057374	Q96RL1	UIMC1_HUMAN	ubiquitin interaction motif containing 1	464	Necessary for interaction with NR6A1 C- terminus.				double-strand break repair|G2/M transition DNA damage checkpoint|histone H2A K63-linked deubiquitination|negative regulation of transcription, DNA-dependent|positive regulation of DNA repair|response to ionizing radiation|transcription, DNA-dependent	BRCA1-A complex	histone binding|K63-linked polyubiquitin binding			ovary(3)|skin(1)	4	all_cancers(89;7.96e-05)|Renal(175;0.000269)|Lung NSC(126;0.00476)|all_lung(126;0.00806)	Medulloblastoma(196;0.0145)|all_neural(177;0.0325)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCTGCTACCTGGAGAGACTTC	0.353													9	391					1.49906e-05	0.00018321	0.000219431	1	0
NSD1	64324	broad.mit.edu	37	5	176637239	176637239	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:176637239G>C	uc003mfr.3	+	5	1977	c.1839G>C	c.(1837-1839)CTG>CTC	p.L613L	NSD1_uc003mft.3_Silent_p.L344L|NSD1_uc003mfs.1_Silent_p.L510L|NSD1_uc011dfx.1_Silent_p.L261L	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	613					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		AACGAAGCCTGGTGTGTGGTT	0.433			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			4	134					0	0	3.59834e-05	0	0
MAPK9	5601	broad.mit.edu	37	5	179666950	179666950	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:179666950C>G	uc003mls.3	-	10	1305	c.1034G>C	c.(1033-1035)AGA>ACA	p.R345T	MAPK9_uc003mlt.3_Missense_Mutation_p.R345T|MAPK9_uc010jlc.2_Missense_Mutation_p.R345T|MAPK9_uc003mlv.3_Missense_Mutation_p.R345T	NM_002752	NP_002743	P45984	MK09_HUMAN	mitogen-activated protein kinase 9 isoform JNK2	345					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|protein binding|protein binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)	4	all_cancers(89;6.54e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0236)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGCATGTTCTCTTTCTTCCAA	0.343													4	153					0	0	3.59834e-05	0	0
EXOC2	55770	broad.mit.edu	37	6	486758	486758	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:486758C>G	uc003mtd.2	-	28	2822	c.2688G>C	c.(2686-2688)CTG>CTC	p.L896L	EXOC2_uc003mte.2_Silent_p.L896L|EXOC2_uc011dho.1_Silent_p.L491L	NM_018303	NP_060773	Q96KP1	EXOC2_HUMAN	Sec5 protein	896					exocytosis|protein transport					breast(4)|ovary(2)|pancreas(1)	7	Ovarian(93;0.0733)	Breast(5;0.0014)|all_lung(73;0.0697)|all_hematologic(90;0.0897)		OV - Ovarian serous cystadenocarcinoma(45;0.0507)|BRCA - Breast invasive adenocarcinoma(62;0.14)		GGAGCTCTTCCAGTAACCTGC	0.517													4	83					0	0	0.00024832	0	0
BPHL	670	broad.mit.edu	37	6	3129332	3129332	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:3129332C>G	uc003mva.2	+	4	481	c.432C>G	c.(430-432)ACC>ACG	p.T144T	BPHL_uc003muz.2_RNA|BPHL_uc011dht.1_RNA|BPHL_uc003muy.2_Silent_p.T127T	NM_004332	NP_004323	Q86WA6	BPHL_HUMAN	biphenyl hydrolase-like precursor	144					cellular amino acid metabolic process|response to toxin	mitochondrion	hydrolase activity				0	Ovarian(93;0.0386)	all_hematologic(90;0.108)				GGGGCATAACCGCACTCATTG	0.498													5	127					0	0	0.000602214	0	0
F13A1	2162	broad.mit.edu	37	6	6197499	6197499	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:6197499T>C	uc003mwv.2	-	9	1296	c.1173A>G	c.(1171-1173)GGA>GGG	p.G391G	F13A1_uc011dib.1_Silent_p.G328G	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	391					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	CTTGCCAGCCTCCAAATCCAA	0.478													4	83					0	0	3.59834e-05	0	0
RIOK1	83732	broad.mit.edu	37	6	7393457	7393457	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:7393457A>T	uc003mxn.2	+	2	371	c.197A>T	c.(196-198)GAT>GTT	p.D66V	RIOK1_uc003mxm.1_5'UTR	NM_031480	NP_113668	Q9BRS2	RIOK1_HUMAN	RIO kinase 1 isoform 1	66							ATP binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|skin(1)	4	Ovarian(93;0.0418)					tatgacgatgatgatgatgaC	0.303													36	117					0	0	0.000491102	0	0
RIOK1	83732	broad.mit.edu	37	6	7396958	7396959	+	Missense_Mutation	DNP	CG	AC	AC			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:7396958_7396959CG>AC	uc003mxn.2	+	4	564_565	c.390_391CG>AC	c.(388-393)TCCGTC>TCACTC	p.V131L	RIOK1_uc003mxm.1_Missense_Mutation_p.V27L	NM_031480	NP_113668	Q9BRS2	RIOK1_HUMAN	RIO kinase 1 isoform 1	131							ATP binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|skin(1)	4	Ovarian(93;0.0418)					TTACTGATTCCGTCATAAATAA	0.317													9	300					0	0	6.4e-05	0	0
HIVEP1	3096	broad.mit.edu	37	6	12121787	12121787	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:12121787C>T	uc003nac.2	+	4	1938	c.1759C>T	c.(1759-1761)CTT>TTT	p.L587F	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	587					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				CAAGCCTGAACTTTCTAGTGC	0.498													13	58					0	0	0.000308642	0	0
PHACTR1	221692	broad.mit.edu	37	6	12718979	12718979	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:12718979G>T	uc010jpc.2	+	3	335	c.3G>T	c.(1-3)ATG>ATT	p.M1I	PHACTR1_uc011dir.1_Missense_Mutation_p.M1I|PHACTR1_uc003nag.1_Missense_Mutation_p.M1I|PHACTR1_uc003nah.1_Missense_Mutation_p.M1I|PHACTR1_uc003nai.2_Missense_Mutation_p.M1I	NM_030948	NP_112210	Q9C0D0	PHAR1_HUMAN	phosphatase and actin regulator 1	1						cell junction|cytoplasm|synapse	actin binding|protein phosphatase inhibitor activity				0	Breast(50;0.0427)|Ovarian(93;0.12)	all_hematologic(90;0.122)|Lung SC(78;0.195)	Epithelial(50;0.146)|BRCA - Breast invasive adenocarcinoma(129;0.239)			CATCAAGGATGGATTATCCCA	0.373													9	267					4.68919e-08	6.14536e-07	0.000673444	1	0
PHACTR1	221692	broad.mit.edu	37	6	13228059	13228059	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:13228059G>C	uc010jpc.2	+	9	1330	c.998G>C	c.(997-999)CGG>CCG	p.R333P	PHACTR1_uc011dir.1_Missense_Mutation_p.R402P|PHACTR1_uc003nag.1_Missense_Mutation_p.R333P|PHACTR1_uc003nah.1_Missense_Mutation_p.R333P	NM_030948	NP_112210	Q9C0D0	PHAR1_HUMAN	phosphatase and actin regulator 1	333						cell junction|cytoplasm|synapse	actin binding|protein phosphatase inhibitor activity				0	Breast(50;0.0427)|Ovarian(93;0.12)	all_hematologic(90;0.122)|Lung SC(78;0.195)	Epithelial(50;0.146)|BRCA - Breast invasive adenocarcinoma(129;0.239)			TCTGAGCAGCGGGTCCCCTGT	0.473													4	262					0	0	3.59834e-05	0	0
SIRT5	23408	broad.mit.edu	37	6	13584406	13584406	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:13584406C>G	uc003nay.2	+	3	360	c.64C>G	c.(64-66)CCA>GCA	p.P22A	SIRT5_uc003naw.2_Missense_Mutation_p.P22A|SIRT5_uc003nax.2_5'UTR|SIRT5_uc011dit.1_Missense_Mutation_p.P22A	NM_012241	NP_036373	Q9NXA8	SIRT5_HUMAN	sirtuin 5 isoform 1	22					chromatin silencing|protein ADP-ribosylation|protein deacetylation	mitochondrial intermembrane space|mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|zinc ion binding			skin(2)|upper_aerodigestive_tract(1)	3	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.176)		Suramin(DB04786)	CCTGAAGCCTCCAGCGTCCAC	0.493													4	190					0	0	3.59834e-05	0	0
ATXN1	6310	broad.mit.edu	37	6	16306579	16306579	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:16306579C>A	uc003nbt.2	-	9	3400	c.2429G>T	c.(2428-2430)CGG>CTG	p.R810L	ATXN1_uc010jpi.2_Missense_Mutation_p.R810L|ATXN1_uc010jpj.1_RNA	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	810	Interaction with USP7.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				TACATTAGACCGGCCTTCAAT	0.468													7	213					0.000978159	0.00917326	0.000978159	1	0
NHLRC1	378884	broad.mit.edu	37	6	18122653	18122653	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:18122653C>T	uc003ncl.1	-	1	199	c.185G>A	c.(184-186)CGC>CAC	p.R62H		NM_198586	NP_940988	Q6VVB1	NHLC1_HUMAN	NHL repeat containing 1	62	RING-type.				proteasomal ubiquitin-dependent protein catabolic process|protein polyubiquitination	endoplasmic reticulum|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0	Ovarian(93;0.016)|Breast(50;0.0245)	all_hematologic(90;0.165)	all cancers(50;0.0451)|Epithelial(50;0.0493)			GGCCAGAGTGCGCGGGTGCGC	0.701													4	16					0	0	0.00024832	0	0
E2F3	1871	broad.mit.edu	37	6	20490622	20490622	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:20490622G>C	uc003nda.2	+	7	1686	c.1359G>C	c.(1357-1359)TTG>TTC	p.L453F		NM_001949	NP_001940	O00716	E2F3_HUMAN	E2F transcription factor 3	453	Transactivation (Potential).				G1 phase of mitotic cell cycle|G2 phase of mitotic cell cycle|transcription initiation from RNA polymerase II promoter	transcription factor complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(1)	1	all_cancers(95;0.154)|all_epithelial(95;0.0585)|Breast(50;0.146)|Ovarian(93;0.148)		OV - Ovarian serous cystadenocarcinoma(7;0.0068)|all cancers(50;0.0148)|Epithelial(50;0.0562)			CTTACGATTTGGAAAAGCTCC	0.468													7	417					0	0	0.000274275	0	0
CDKAL1	54901	broad.mit.edu	37	6	21231231	21231231	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:21231231G>T	uc003ndc.1	+	16	1875	c.1701G>T	c.(1699-1701)CTG>CTT	p.L567L	CDKAL1_uc003ndd.1_Silent_p.L567L|CDKAL1_uc003nde.1_Silent_p.L476L|CDKAL1_uc003ndf.1_Silent_p.L80L|CDKAL1_uc003ndg.2_RNA	NM_017774	NP_060244	Q5VV42	CDKAL_HUMAN	CDK5 regulatory subunit associated protein	567	Helical; (Potential).				RNA modification	integral to membrane	4 iron, 4 sulfur cluster binding|metal ion binding|transferase activity			ovary(2)	2	all_epithelial(95;0.0708)|Breast(50;0.131)|Ovarian(93;0.227)		OV - Ovarian serous cystadenocarcinoma(7;0.0241)|all cancers(50;0.123)|Epithelial(50;0.248)			TGGCTCTGCTGGGTCTTCTTT	0.413													12	343					3.45872e-05	0.000417197	0.000422831	1	0
GPLD1	2822	broad.mit.edu	37	6	24436820	24436820	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:24436820G>T	uc003ned.1	-	22	2453	c.2342C>A	c.(2341-2343)CCA>CAA	p.P781Q		NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	781						extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						TTCTGGACATGGAGTTATCCA	0.398													8	137					0.000442599	0.00445669	0.000442599	1	0
LRRC16A	55604	broad.mit.edu	37	6	25594753	25594753	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:25594753C>G	uc011djw.1	+	32	3493	c.3117C>G	c.(3115-3117)TCC>TCG	p.S1039S	LRRC16A_uc010jpx.2_Silent_p.S1039S|LRRC16A_uc010jpy.2_Silent_p.S1039S	NM_017640	NP_060110	Q5VZK9	LR16A_HUMAN	leucine rich repeat containing 16A	1039	Inhibits capping activity of CAPZA2 (By similarity).				actin filament organization|blood coagulation|cell migration|lamellipodium assembly|ruffle organization|urate metabolic process	cytosol|lamellipodium|nucleus				ovary(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4						AAATGGATTCCAAGTGAGTTC	0.318													3	53					0	0	0.000602214	0	0
SCGN	10590	broad.mit.edu	37	6	25669793	25669793	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:25669793C>G	uc003nfb.2	+	5	594	c.391C>G	c.(391-393)CGC>GGC	p.R131G	SCGN_uc010jpz.2_Silent_p.S40S	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	131	EF-hand 3.					extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						TGCTGAGCTCCGCGTGAGTGT	0.408													4	156					0	0	0.000157383	0	0
HIST1H3B	8358	broad.mit.edu	37	6	26032022	26032022	+	Silent	SNP	C	G	G	rs139461801	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:26032022C>G	uc003nfs.1	-	1	267	c.267G>C	c.(265-267)GCG>GCC	p.A89A		NM_003537	NP_003528	P68431	H31_HUMAN	histone cluster 1, H3b	89					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(2)	2						GCGCCATCACCGCAGAGCTCT	0.552													4	132					0	0	3.59834e-05	0	0
HIST1H2BD	3017	broad.mit.edu	37	6	26158549	26158549	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:26158549C>A	uc003ngr.2	+	1	201	c.152C>A	c.(151-153)CCC>CAC	p.P51H	HIST1H2BD_uc003ngs.2_Missense_Mutation_p.P51H	NM_021063	NP_066407	P58876	H2B1D_HUMAN	histone cluster 1, H2bd	51					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|pancreas(1)	2						CAGGTCCATCCCGACACCGGC	0.567													8	229					0.000442599	0.00445669	0.000442599	1	0
HIST1H1D	3007	broad.mit.edu	37	6	26235067	26235067	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:26235067C>G	uc003nhd.2	-	1	150	c.95G>C	c.(94-96)GGG>GCG	p.G32A		NM_005320	NP_005311	P16402	H13_HUMAN	histone cluster 1, H1d	32					nucleosome assembly	nucleosome|nucleus	DNA binding			skin(1)	1		all_hematologic(11;0.0945)|Acute lymphoblastic leukemia(11;0.167)				TTTGCGTTTCCCAGCAGTTGC	0.537													4	157					0	0	3.59834e-05	0	0
BTN3A3	10384	broad.mit.edu	37	6	26451990	26451990	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:26451990G>C	uc003nhz.2	+	11	1286	c.1106G>C	c.(1105-1107)CGG>CCG	p.R369P	BTN3A3_uc003nia.2_Missense_Mutation_p.R327P|BTN3A3_uc011dkn.1_Missense_Mutation_p.R320P	NM_006994	NP_008925	O00478	BT3A3_HUMAN	butyrophilin, subfamily 3, member A3 isoform a	369	B30.2/SPRY.|Cytoplasmic (Potential).					integral to membrane					0						GAAGAGCCGCGGGATCTGCCA	0.537													5	102					0	0	3.59834e-05	0	0
FKSG83	83954	broad.mit.edu	37	6	27293468	27293468	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:27293468C>G	uc010jqt.2	+	1	891	c.407C>G	c.(406-408)CCA>CGA	p.P136R	FKSG83_uc010jqs.1_3'UTR	NM_032030	NP_114419	Q3KNW7	Q3KNW7_HUMAN	FKSG83	136						integral to membrane	pheromone receptor activity				0						TCTTCCTACCCAATTATCTGT	0.343													4	109					0	0	3.59834e-05	0	0
SCAND3	114821	broad.mit.edu	37	6	28540309	28540309	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:28540309C>G	uc003nlo.2	-	4	3975	c.3357G>C	c.(3355-3357)ATG>ATC	p.M1119I		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1119					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						tcttcccttgcatagaagcat	0													4	209					0	0	0.00024832	0	0
HLA-F	3134	broad.mit.edu	37	6	29694860	29694860	+	Missense_Mutation	SNP	C	A	A	rs57486551		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:29694860C>A	uc003nno.3	+	7	1361	c.1237C>A	c.(1237-1239)CGC>AGC	p.R413S	HLA-F_uc011dlx.1_Intron|HLA-F_uc011dly.1_Intron|LOC285830_uc003nnp.2_RNA|LOC285830_uc011dlz.1_RNA	NM_001098479	NP_001091949	P30511	HLAF_HUMAN	major histocompatibility complex, class I, F	Error:Variant_position_missing_in_P30511_after_alignment					antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity				0						GCAAAGCCTTCGCTTTGGCTT	0.463													6	284					0.000274275	0.00290969	0.000274275	1	0
MDC1	9656	broad.mit.edu	37	6	30671266	30671266	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:30671266C>A	uc003nrg.3	-	11	6051	c.5611G>T	c.(5611-5613)GAG>TAG	p.E1871*	MDC1_uc003nrf.3_Nonsense_Mutation_p.E502*	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1871	Required for nuclear localization (NLS2).				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						TTGGGCTCCTCCTCTGCCTGG	0.493								Other_conserved_DNA_damage_response_genes					8	207					6.40141e-05	0.00075092	0.000978159	1	0
BAT2	7916	broad.mit.edu	37	6	31604521	31604521	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:31604521C>G	uc003nvb.3	+	28	6195	c.5946C>G	c.(5944-5946)CCC>CCG	p.P1982P	BAT2_uc003nvc.3_Silent_p.P1982P	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1982	3-2.|3 X 50 AA type C repeats.					cytoplasm|nucleus	protein binding				0						TGCTTCTACCCATGGTAGACT	0.547													5	282					0	0	3.59834e-05	0	0
BAT2	7916	broad.mit.edu	37	6	31605241	31605241	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:31605241C>G	uc003nvb.3	+	31	6601	c.6352C>G	c.(6352-6354)CTG>GTG	p.L2118V	BAT2_uc003nvc.3_Missense_Mutation_p.L2118V	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	2118						cytoplasm|nucleus	protein binding				0						ACCAGATGCCCTGCGCTGGAT	0.632													4	191					0	0	0.00024832	0	0
BAT3	7917	broad.mit.edu	37	6	31615554	31615554	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:31615554G>A	uc003nvg.3	-	7	934	c.620C>T	c.(619-621)CCG>CTG	p.P207L	BAT3_uc003nvf.3_Missense_Mutation_p.P201L|BAT3_uc003nvh.3_Missense_Mutation_p.P201L|BAT3_uc003nvi.3_Missense_Mutation_p.P201L|BAT3_uc011dnw.1_Missense_Mutation_p.P201L|BAT3_uc011dnx.1_Missense_Mutation_p.P201L|BAT3_uc003nvj.1_Missense_Mutation_p.P201L	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	207	Pro-rich.				apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						GGTCACAGCCGGTGGCTGCGG	0.612													7	312					0	0	8.12818e-05	0	0
BAT5	7920	broad.mit.edu	37	6	31661153	31661153	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:31661153C>G	uc003nvy.1	-	6	516	c.486G>C	c.(484-486)TGG>TGC	p.W162C	BAT5_uc003nvx.1_5'UTR|BAT5_uc011dny.1_Missense_Mutation_p.W129C|BAT5_uc003nvz.1_5'UTR|BAT5_uc011dnz.1_5'UTR|BAT5_uc010jtc.1_RNA|BAT5_uc011doa.1_Missense_Mutation_p.G64A	NM_021160	NP_066983	O95870	ABHGA_HUMAN	HLA-B associated transcript 5	162						integral to membrane	hydrolase activity|protein binding				0						TGGGTTCTTCCCAGTGGAAGT	0.572													4	240					0	0	0.000157383	0	0
MSH5	4439	broad.mit.edu	37	6	31726371	31726371	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:31726371C>G	uc003nwv.1	+	14	1269	c.1190C>G	c.(1189-1191)CCC>CGC	p.P397R	MSH5_uc003nwt.1_Missense_Mutation_p.P414R|MSH5_uc003nwu.1_Missense_Mutation_p.P397R|MSH5_uc003nww.1_Missense_Mutation_p.P397R|MSH5_uc003nwx.1_Missense_Mutation_p.P414R|MSH5_uc011dof.1_Missense_Mutation_p.P96R|MSH5_uc003nwy.1_Missense_Mutation_p.P71R|MSH5_uc003nwz.3_5'Flank	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c	397					chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			ovary(2)|breast(1)	3						ACAGTCCTCCCCAACATAGAT	0.532								Direct_reversal_of_damage|MMR					5	272					0	0	0.000157383	0	0
MSH5	4439	broad.mit.edu	37	6	31726610	31726610	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:31726610G>T	uc003nwv.1	+	15	1363	c.1284G>T	c.(1282-1284)CTG>CTT	p.L428L	MSH5_uc003nwt.1_Silent_p.L445L|MSH5_uc003nwu.1_Silent_p.L428L|MSH5_uc003nww.1_Silent_p.L428L|MSH5_uc003nwx.1_Silent_p.L445L|MSH5_uc011dof.1_Silent_p.L127L|MSH5_uc003nwy.1_Silent_p.L102L|MSH5_uc003nwz.3_5'Flank	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c	428					chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			ovary(2)|breast(1)	3						TGGAGAATCTGGACTCCCGTA	0.507								Direct_reversal_of_damage|MMR					10	249					0.000673444	0.00655963	0.000673444	1	0
C6orf27	80737	broad.mit.edu	37	6	31734132	31734132	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:31734132C>A	uc011dog.1	-	15	2452	c.2214G>T	c.(2212-2214)CCG>CCT	p.P738P	C6orf27_uc003nxd.2_Silent_p.P413P	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	738						extracellular region				ovary(3)	3						CTTTGCTGCCCGGGGCCAAGA	0.622													6	202					0.000157383	0.00173811	0.000157383	1	0
C6orf27	80737	broad.mit.edu	37	6	31740849	31740849	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:31740849C>G	uc011dog.1	-	7	1207	c.969G>C	c.(967-969)ACG>ACC	p.T323T	C6orf27_uc003nxd.2_5'UTR|C6orf27_uc011doh.1_RNA	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	323						extracellular region				ovary(3)	3						CCATGCTGCCCGTGGTGTCCA	0.622													4	208					0	0	0.000157383	0	0
VARS	7407	broad.mit.edu	37	6	31752209	31752209	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:31752209C>G	uc003nxe.2	-	12	1961	c.1538G>C	c.(1537-1539)GGG>GCG	p.G513A	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	513					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	CACGAGGACCCCGAACTCCAC	0.597													5	406					0	0	0.000157383	0	0
LSM2	57819	broad.mit.edu	37	6	31765774	31765774	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:31765774G>T	uc003nxg.2	-	4	364	c.155C>A	c.(154-156)CCT>CAT	p.P52H	VARS_uc003nxe.2_5'Flank|VARS_uc011doi.1_5'Flank	NM_021177	NP_067000	Q9Y333	LSM2_HUMAN	LSM2 homolog, U6 small nuclear RNA associated	52					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|cytosol|nucleoplasm	U6 snRNA binding				0						CACCATGTGAGGGTATTTCTC	0.393													12	424					0.000219431	0.00241088	0.000219431	1	0
HSPA1L	3305	broad.mit.edu	37	6	31778012	31778013	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:31778012_31778013GG>TT	uc003nxh.2	-	2	1920_1921	c.1737_1738CC>AA	c.(1735-1740)CTCCTT>CTAATT	p.L580I	HSPA1L_uc010jte.2_Missense_Mutation_p.L580I	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	580					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						AGCCACGAAAGGAGCTCGTTGC	0.386													17	779					0	0	6.4e-05	0	0
EHMT2	10919	broad.mit.edu	37	6	31860281	31860281	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:31860281G>T	uc003nxz.1	-	7	777	c.767C>A	c.(766-768)CCC>CAC	p.P256H	EHMT2_uc003nxy.1_Missense_Mutation_p.P47H|EHMT2_uc011don.1_Missense_Mutation_p.P313H|EHMT2_uc003nya.1_Missense_Mutation_p.P256H	NM_006709	NP_006700	Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	256					DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			ovary(1)	1						CAGGGACCCGGGGTCCCCTTT	0.557													9	309					0.000673444	0.00655963	0.000673444	1	0
ZBTB12	221527	broad.mit.edu	37	6	31867757	31867757	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:31867757C>T	uc003nyd.1	-	2	1502	c.1326G>A	c.(1324-1326)ACG>ACA	p.T442T	EHMT2_uc011don.1_5'Flank|EHMT2_uc003nxz.1_5'Flank|EHMT2_uc003nya.1_5'Flank|EHMT2_uc003nyb.1_5'Flank|C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_5'Flank	NM_181842	NP_862825	Q9Y330	ZBT12_HUMAN	zinc finger and BTB domain containing 12	442					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGTTCTCGGCCGTGGTCTTGC	0.682													5	109					0	0	0.000602214	0	0
ZBTB12	221527	broad.mit.edu	37	6	31868419	31868419	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:31868419G>C	uc003nyd.1	-	2	840	c.664C>G	c.(664-666)CGG>GGG	p.R222G	EHMT2_uc003nxz.1_5'Flank|EHMT2_uc003nya.1_5'Flank|EHMT2_uc003nyb.1_5'Flank|C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_5'Flank	NM_181842	NP_862825	Q9Y330	ZBT12_HUMAN	zinc finger and BTB domain containing 12	222					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGTTTGAGCCGGTGTGCCACC	0.642													5	265					0	0	0.000442599	0	0
SKIV2L	6499	broad.mit.edu	37	6	31929687	31929687	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:31929687G>T	uc003nyn.1	+	10	1309	c.920G>T	c.(919-921)TGG>TTG	p.W307L	RDBP_uc003nyk.2_5'Flank|RDBP_uc011dot.1_5'Flank|RDBP_uc003nym.1_5'Flank|SKIV2L_uc011dou.1_Missense_Mutation_p.W149L|SKIV2L_uc011dov.1_Missense_Mutation_p.W114L	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	307						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						CTCCCATAGTGGGCATTTGAG	0.557													18	353					5.35047e-06	6.64758e-05	0.00047179	1	0
SKIV2L	6499	broad.mit.edu	37	6	31929831	31929831	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:31929831G>C	uc003nyn.1	+	10	1453	c.1064G>C	c.(1063-1065)CGC>CCC	p.R355P	RDBP_uc003nyk.2_5'Flank|RDBP_uc011dot.1_5'Flank|RDBP_uc003nym.1_5'Flank|SKIV2L_uc011dou.1_Missense_Mutation_p.R197P|SKIV2L_uc011dov.1_Missense_Mutation_p.R162P	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	355	Helicase ATP-binding.					nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						CACATGACACGGTATGAGTTC	0.512													4	258					0	0	8.12818e-05	0	0
TNXB	7148	broad.mit.edu	37	6	32010288	32010288	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:32010288G>C	uc003nzl.2	-	40	12350	c.12148C>G	c.(12148-12150)CGC>GGC	p.R4050G	TNXB_uc003nzg.1_Missense_Mutation_p.R481G|TNXB_uc003nzh.1_Missense_Mutation_p.R519G	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	4097	Fibrinogen C-terminal.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGCCGCTCGCGGTTGCCGTTG	0.672													7	214					0	0	0.000274275	0	0
TNXB	7148	broad.mit.edu	37	6	32016340	32016340	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:32016340C>A	uc003nzl.2	-	29	10041	c.9839G>T	c.(9838-9840)TGG>TTG	p.W3280L	TNXB_uc003nzg.1_5'Flank|TNXB_uc003nzh.1_5'Flank	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3327	Fibronectin type-III 25.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGCCACCGTCCATGAGAGGCC	0.701													8	161					1.12685e-05	0.000138146	0.000274275	1	0
TNXB	7148	broad.mit.edu	37	6	32024611	32024611	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:32024611C>G	uc003nzl.2	-	23	8097	c.7895G>C	c.(7894-7896)GGG>GCG	p.G2632A		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2692	Fibronectin type-III 19.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGTCAGCTCCCCCAGGCGAGG	0.617													7	357					0	0	0.000274275	0	0
TNXB	7148	broad.mit.edu	37	6	32041445	32041445	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:32041445G>C	uc003nzl.2	-	12	4862	c.4660C>G	c.(4660-4662)CTG>GTG	p.L1554V		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1641	Fibronectin type-III 8.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						ACCACAGACAGGGGGCCCATG	0.572													4	225					0	0	8.12818e-05	0	0
TNXB	7148	broad.mit.edu	37	6	32062857	32062857	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:32062857G>C	uc003nzl.2	-	4	2556	c.2354C>G	c.(2353-2355)CCC>CGC	p.P785R		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TCTCACCGTGGGGATGAACTG	0.587													5	218					0	0	0.000602214	0	0
TNXB	7148	broad.mit.edu	37	6	32063874	32063874	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:32063874C>G	uc003nzl.2	-	3	1958	c.1756G>C	c.(1756-1758)GGT>CGT	p.G586R		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	586	EGF-like 15.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGCCTCACACCGCAATCCTCG	0.667													4	232					0	0	3.59834e-05	0	0
ATF6B	1388	broad.mit.edu	37	6	32083670	32083670	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:32083670C>G	uc003nzn.2	-	18	1991	c.1958G>C	c.(1957-1959)AGG>ACG	p.R653T	TNXB_uc010jts.1_Intron|ATF6B_uc003nzm.1_Intron|ATF6B_uc003nzo.2_Missense_Mutation_p.R650T	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	653	Lumenal (Potential).				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GTGAATCACCCTGGTGTCCAT	0.547													5	307					0	0	0.000157383	0	0
FKBPL	63943	broad.mit.edu	37	6	32097495	32097495	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:32097495C>G	uc003nzr.2	-	2	333	c.63G>C	c.(61-63)TGG>TGC	p.W21C	ATF6B_uc003nzo.2_5'Flank|ATF6B_uc003nzn.2_5'Flank|ATF6B_uc011dpg.1_5'Flank|ATF6B_uc011dph.1_5'Flank	NM_022110	NP_071393	Q9UIM3	FKBPL_HUMAN	WAF-1/CIP1 stabilizing protein 39	21					response to radiation	membrane|nucleus	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0						GGTTCTTTTCCCACTCTTGTT	0.502													6	432					0	0	3.59834e-05	0	0
EGFL8	80864	broad.mit.edu	37	6	32134372	32134372	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:32134372G>C	uc003oab.1	+	3	257	c.199G>C	c.(199-201)GGG>CGG	p.G67R	PPT2_uc003nzy.1_RNA|PPT2_uc010jtu.1_3'UTR|EGFL8_uc003oac.1_Missense_Mutation_p.G67R	NM_030652	NP_085155	Q99944	EGFL8_HUMAN	NG3 protein precursor	67	EMI.					extracellular region|integral to membrane	calcium ion binding				0						CTTGTGCGCTGGGAGGCGCAT	0.607													4	270					0	0	0.000157383	0	0
NOTCH4	4855	broad.mit.edu	37	6	32164715	32164715	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:32164715G>T	uc003obb.2	-	28	5326	c.5187C>A	c.(5185-5187)GCC>GCA	p.A1729A	GPSM3_uc003oaz.2_5'Flank|NOTCH4_uc011dpt.1_Silent_p.A138A|NOTCH4_uc003oba.2_Silent_p.A389A|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc011dpw.1_Silent_p.A138A	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1729	Cytoplasmic (Potential).|ANK 3.				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						ATTTATCTCTGGCCCCCACGT	0.552													13	336					5.01169e-05	0.000591401	0.000566183	1	0
C6orf10	10665	broad.mit.edu	37	6	32334073	32334074	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:32334073_32334074CG>AT	uc011dpy.1	-	5	345_346	c.172_173CG>AT	c.(172-174)CGA>ATA	p.R58I	C6orf10_uc011dpz.1_Missense_Mutation_p.R58I	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	58						integral to membrane				skin(1)	1						ATATGCATGTCGGGATCCTAAA	0.267													8	307					0	0	6.4e-05	0	0
HLA-DRA	3122	broad.mit.edu	37	6	32407763	32407763	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:32407763C>G	uc003obh.2	+	1	117	c.36C>G	c.(34-36)TTC>TTG	p.F12L	HLA-DRA_uc003obi.2_Missense_Mutation_p.F12L	NM_019111	NP_061984	P01903	DRA_HUMAN	major histocompatibility complex, class II, DR	12					antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|Golgi apparatus|integral to plasma membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity			ovary(1)|skin(1)	2						TAGGATTTTTCATCATAGCTG	0.483									T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Kaposi_Sarcoma_Familial_Clustering_of				4	77					0	0	0.00024832	0	0
PSMB8	5696	broad.mit.edu	37	6	32811685	32811685	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:32811685G>C	uc003oce.2	-	1	132	c.89C>G	c.(88-90)CCA>CGA	p.P30R	PSMB8_uc003ocf.2_Intron|PSMB8_uc011dqh.1_Missense_Mutation_p.P30R	NM_148919	NP_683720	P28062	PSB8_HUMAN	proteasome beta 8 subunit isoform E2 proprotein	30			PGH -> RPD (in LPM7C).		anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|type I interferon-mediated signaling pathway|viral reproduction	cytoplasm|nucleus|proteasome core complex	protein binding|threonine-type endopeptidase activity			skin(1)	1						GTAGTGTCCTGGGTCCGAGCG	0.662													4	148					0	0	3.59834e-05	0	0
RING1	6015	broad.mit.edu	37	6	33178939	33178939	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:33178939C>G	uc003odk.2	+	5	654	c.460C>G	c.(460-462)CAG>GAG	p.Q154E	RING1_uc011dqx.1_Missense_Mutation_p.Q154E|RING1_uc003odl.2_Missense_Mutation_p.Q125E	NM_002931	NP_002922	Q06587	RING1_HUMAN	ring finger protein 1	154	Necessary for transcriptional repression (By similarity).				histone H2A monoubiquitination|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear speck|PcG protein complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						CTACAGGGCCCAGCGTGTGAG	0.507													5	243					0	0	3.59834e-05	0	0
VPS52	6293	broad.mit.edu	37	6	33235642	33235642	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:33235642C>G	uc003odm.1	-	9	1143	c.933G>C	c.(931-933)CAG>CAC	p.Q311H	VPS52_uc003odn.1_Missense_Mutation_p.Q186H|VPS52_uc003odo.1_Missense_Mutation_p.Q236H|VPS52_uc011dqy.1_Missense_Mutation_p.Q186H|VPS52_uc011dqz.1_Missense_Mutation_p.Q186H	NM_022553	NP_072047	Q8N1B4	VPS52_HUMAN	vacuolar protein sorting 52	311					protein transport	endosome membrane|Golgi apparatus				ovary(4)|skin(1)	5						CTGACCTTACCTGCACCTTCA	0.517													4	168					0	0	3.59834e-05	0	0
WDR46	9277	broad.mit.edu	37	6	33255992	33255992	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:33255992C>A	uc003ods.2	-	5	538	c.494G>T	c.(493-495)GGG>GTG	p.G165V	WDR46_uc011dra.1_Missense_Mutation_p.G111V|WDR46_uc010juo.1_RNA|PFDN6_uc003odt.1_5'Flank|PFDN6_uc010jup.1_5'Flank	NM_005452	NP_005443	O15213	WDR46_HUMAN	WD repeat domain 46 isoform 1	165											0						TGTGTCTTCCCCATCCTCCCC	0.483													12	277					1.49906e-05	0.00018321	0.000219431	1	0
DAXX	1616	broad.mit.edu	37	6	33289599	33289599	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:33289599C>A	uc003oec.2	-	2	308	c.104G>T	c.(103-105)GGG>GTG	p.G35V	DAXX_uc011drd.1_Intron|DAXX_uc011dre.1_Missense_Mutation_p.G47V|DAXX_uc003oed.2_Missense_Mutation_p.G35V|DAXX_uc010juw.2_5'UTR	NM_001350	NP_001341	Q9UER7	DAXX_HUMAN	death-domain associated protein isoform a	35	Necessary for interaction with USP7.				activation of JUN kinase activity|androgen receptor signaling pathway|apoptosis|induction of apoptosis via death domain receptors|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|regulation of protein ubiquitination|transcription, DNA-dependent	chromosome, centromeric region|cytosol|nucleolus|PML body	androgen receptor binding|heat shock protein binding|p53 binding|protein homodimerization activity|protein N-terminus binding|receptor signaling protein activity|transcription factor binding|ubiquitin protein ligase binding			pancreas(18)|ovary(2)|skin(2)|prostate(1)	23						GGCTTCTGCCCCAGGTGAGGC	0.587			Mis|F|N		Pancreatic neuroendocrine tumors								7	146					8.12818e-05	0.000938396	8.12818e-05	1	0
SYNGAP1	8831	broad.mit.edu	37	6	33402959	33402959	+	Silent	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:33402959A>G	uc011dri.1	+	6	735	c.540A>G	c.(538-540)TCA>TCG	p.S180S	SYNGAP1_uc003oeo.1_Silent_p.S165S|SYNGAP1_uc010juy.2_Silent_p.S165S|SYNGAP1_uc010juz.2_5'Flank	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	180	PH.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						TTAAGGAGTCACACTCTCATG	0.483													4	162					0	0	0.00024832	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33408641	33408641	+	Silent	SNP	G	T	T	rs149727287		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:33408641G>T	uc011dri.1	+	11	2007	c.1812G>T	c.(1810-1812)TCG>TCT	p.S604S	SYNGAP1_uc010juy.2_Silent_p.S589S|SYNGAP1_uc010juz.2_Silent_p.S316S	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	604	Ras-GAP.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						CGATTATGTCGCCCAGTCTCT	0.597													4	46					3.59834e-05	0.000429	3.59834e-05	1	0
LHFPL5	222662	broad.mit.edu	37	6	35773766	35773766	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:35773766C>T	uc003olg.1	+	1	696	c.319C>T	c.(319-321)CTC>TTC	p.L107F		NM_182548	NP_872354	Q8TAF8	TMHS_HUMAN	lipoma HMGIC fusion partner-like 5	107	Helical; (Potential).					integral to membrane				skin(1)	1						GGGCATGTTCCTCATCATTGG	0.547													5	175					0	0	0.000602214	0	0
SFRS3	6428	broad.mit.edu	37	6	36569747	36569748	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:36569747_36569748GG>CT	uc003omj.2	+	6	647_648	c.476_477GG>CT	c.(475-477)AGG>ACT	p.R159T	SFRS3_uc003omk.2_RNA	NM_003017	NP_003008	P84103	SRSF3_HUMAN	splicing factor, arginine/serine-rich 3	159	2 X approximate repeats, basic.|B-2.|Arg/Ser-rich (RS domain).				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding				0						AGTCGATCTAGGTCAAATGAAA	0.287			T	BCL6	follicular lymphoma								5	221					0	0	6.4e-05	0	0
CDKN1A	1026	broad.mit.edu	37	6	36653549	36653549	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:36653549G>C	uc003omm.3	+	3	589	c.467G>C	c.(466-468)CGG>CCG	p.R156P	CDKN1A_uc011dtq.1_Missense_Mutation_p.R190P|CDKN1A_uc003omn.2_Missense_Mutation_p.R156P	NM_000389	NP_000380	P38936	CDN1A_HUMAN	cyclin-dependent kinase inhibitor 1A	156	Nuclear localization signal (Potential).|PIP-box K+4 motif.			KRR->AAA: Abolishes degradation by the proteasome without affecting the interaction with PCNA.	cell cycle arrest|cellular response to extracellular stimulus|cellular response to ionizing radiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|induction of apoptosis by intracellular signals|negative regulation of cell growth|negative regulation of cell proliferation|positive regulation of fibroblast proliferation|positive regulation of reactive oxygen species metabolic process|Ras protein signal transduction|S phase of mitotic cell cycle|stress-induced premature senescence	cyclin-dependent protein kinase holoenzyme complex|cytosol|nucleoplasm|PCNA-p21 complex	cyclin-dependent protein kinase activating kinase activity|cyclin-dependent protein kinase inhibitor activity|metal ion binding			ovary(1)|breast(1)	2						TCCAAACGCCGGCTGATCTTC	0.587									Multiple_Endocrine_Neoplasia_type_1				4	223					0	0	3.59834e-05	0	0
FTSJD2	23070	broad.mit.edu	37	6	37414177	37414178	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:37414177_37414178CC>AG	uc003ons.2	+	4	649_650	c.396_397CC>AG	c.(394-399)CTCCGG>CTAGGG	p.R133G	FTSJD2_uc010jwu.2_Missense_Mutation_p.R133G	NM_015050	NP_055865	Q8N1G2	MTR1_HUMAN	FtsJ methyltransferase domain containing 2	133	G-patch.				mRNA capping	cytoplasm|nucleus	mRNA (nucleoside-2'-O-)-methyltransferase activity|nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GTCTGACACTCCGGGGCTTTGA	0.525													12	239					0	0	6.4e-05	0	0
FTSJD2	23070	broad.mit.edu	37	6	37443127	37443127	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:37443127C>G	uc003ons.2	+	19	2228	c.1975C>G	c.(1975-1977)CAC>GAC	p.H659D		NM_015050	NP_055865	Q8N1G2	MTR1_HUMAN	FtsJ methyltransferase domain containing 2	659					mRNA capping	cytoplasm|nucleus	mRNA (nucleoside-2'-O-)-methyltransferase activity|nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						CAGTGCCATCCACATCCTCGA	0.602													3	38					0	0	3.59834e-05	0	0
DNAH8	1769	broad.mit.edu	37	6	38802384	38802384	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:38802384C>G	uc003ooe.1	+	30	4281	c.3681C>G	c.(3679-3681)CCC>CCG	p.P1227P		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATATACCACCCCAAGAAGCTA	0.328													4	107					0	0	3.59834e-05	0	0
DNAH8	1769	broad.mit.edu	37	6	38903448	38903449	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:38903448_38903449CC>AA	uc003ooe.1	+	75	11487_11488	c.10887_10888CC>AA	c.(10885-10890)CTCCTC>CTAATC	p.L3630I	DNAH8_uc003oog.1_Missense_Mutation_p.L79I|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AAGATAACCTCCTCTATAAATT	0.322													9	284					0	0	6.4e-05	0	0
KIF6	221458	broad.mit.edu	37	6	39545920	39545920	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:39545920G>T	uc003oot.2	-	10	1188	c.1093C>A	c.(1093-1095)CAA>AAA	p.Q365K	KIF6_uc010jxa.1_Missense_Mutation_p.Q156K|KIF6_uc011dua.1_Missense_Mutation_p.Q365K|KIF6_uc010jxb.1_Missense_Mutation_p.Q365K	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	365	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						ATTTCCTTTTGTAGGCGTTTA	0.448													5	143					0.000157383	0.00173811	0.000157383	1	0
KIF6	221458	broad.mit.edu	37	6	39552729	39552729	+	Missense_Mutation	SNP	C	G	G	rs149838047	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:39552729C>G	uc003oot.2	-	9	1117	c.1022G>C	c.(1021-1023)CGA>CCA	p.R341P	KIF6_uc010jxa.1_Missense_Mutation_p.R132P|KIF6_uc011dua.1_Missense_Mutation_p.R341P|KIF6_uc010jxb.1_Missense_Mutation_p.R341P	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	341					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						GAGTGCCACTCGCTGTGCAAA	0.289													4	329					0	0	0.000602214	0	0
LRFN2	57497	broad.mit.edu	37	6	40400541	40400541	+	Silent	SNP	G	A	A	rs150510241		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:40400541G>A	uc003oph.1	-	2	777	c.312C>T	c.(310-312)TCC>TCT	p.S104S		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	104	LRR 3.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					CAAGATGCAGGGAGCGGAGGC	0.602													17	72					0	0	0.00074312	0	0
TREML2	79865	broad.mit.edu	37	6	41166078	41166078	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:41166078G>C	uc010jxm.1	-	2	324	c.145C>G	c.(145-147)CGC>GGC	p.R49G		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	49	Ig-like V-type.|Extracellular (Potential).				T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCCTCCACGCGGTTTTTGTAG	0.547													5	251					0	0	3.59834e-05	0	0
USP49	25862	broad.mit.edu	37	6	41773948	41773948	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:41773948C>G	uc003ori.2	-	4	996	c.774G>C	c.(772-774)CTG>CTC	p.L258L		NM_018561	NP_061031	Q70CQ1	UBP49_HUMAN	ubiquitin thioesterase 49	258					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0919)|Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000309)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			AGGTGTTGCCCAGGTTGCGCA	0.577													4	98					0	0	3.59834e-05	0	0
UBR2	23304	broad.mit.edu	37	6	42643892	42643892	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:42643892G>C	uc011dur.1	+	39	4350	c.4350G>C	c.(4348-4350)ATG>ATC	p.M1450I	UBR2_uc011dus.1_Missense_Mutation_p.M1095I|UBR2_uc003osh.2_Intron|UBR2_uc011dut.1_Missense_Mutation_p.M38I	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	1450					cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			TGGTTACTATGGCACACATCA	0.418													4	219					0	0	0.00024832	0	0
PRPH2	5961	broad.mit.edu	37	6	42689554	42689554	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:42689554G>T	uc003osk.2	-	1	805	c.519C>A	c.(517-519)GAC>GAA	p.D173E		NM_000322	NP_000313	P23942	PRPH2_HUMAN	peripherin 2	173	Lumenal (Potential).		D -> V (in RP7).		cell adhesion|visual perception	integral to membrane				ovary(4)|central_nervous_system(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.00178)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0904)			TCTCAAACCAGTCCCGAAAAC	0.502													7	192					0.000274275	0.00290969	0.000274275	1	0
ZNF318	24149	broad.mit.edu	37	6	43309910	43309910	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:43309910G>C	uc003oux.2	-	8	3394	c.3316C>G	c.(3316-3318)CAG>GAG	p.Q1106E	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1106					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			GCCTCACTCTGGGTCTTTGAA	0.453													4	75					0	0	3.59834e-05	0	0
VEGFA	7422	broad.mit.edu	37	6	43752361	43752361	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:43752361A>C	uc003owi.2	+	7	1603	c.1112A>C	c.(1111-1113)GAC>GCC	p.D371A	VEGFA_uc003owd.2_3'UTR|VEGFA_uc003owf.2_3'UTR|VEGFA_uc003owe.2_3'UTR|VEGFA_uc003owg.2_3'UTR|VEGFA_uc003owh.2_3'UTR|VEGFA_uc003owj.2_3'UTR|VEGFA_uc010jyx.2_3'UTR|VEGFA_uc003owk.2_RNA	NM_001033756	NP_001028928	P15692	VEGFA_HUMAN	vascular endothelial growth factor A isoform g	Error:Variant_position_missing_in_P15692_after_alignment					basophil chemotaxis|cellular response to hypoxia|induction of positive chemotaxis|induction of positive chemotaxis|platelet activation|platelet degranulation|platelet-derived growth factor receptor signaling pathway|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of cell adhesion|positive regulation of cell division|positive regulation of endothelial cell proliferation|positive regulation of leukocyte migration|positive regulation of mast cell chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|positive regulation of vascular permeability|regulation of cell shape|vascular endothelial growth factor receptor signaling pathway|vasculogenesis	cell surface|extracellular space|membrane|platelet alpha granule lumen	cell surface binding|chemoattractant activity|cytokine activity|fibronectin binding|growth factor activity|heparin binding|platelet-derived growth factor receptor binding|protein heterodimerization activity|protein homodimerization activity|vascular endothelial growth factor receptor 1 binding|vascular endothelial growth factor receptor 2 binding|vascular endothelial growth factor receptor binding			ovary(1)|breast(1)	2	all_cancers(18;5.46e-07)|all_epithelial(2;5.96e-08)|Lung NSC(15;0.000157)|all_lung(25;0.000486)|Hepatocellular(11;0.00309)		all cancers(41;0.000413)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0742)|OV - Ovarian serous cystadenocarcinoma(102;0.196)		Atorvastatin(DB01076)|Bevacizumab(DB00112)|Carvedilol(DB01136)|Ginkgo biloba(DB01381)|Gliclazide(DB01120)|Minocycline(DB01017)|Ranibizumab(DB01270)|Simvastatin(DB00641)	ACCAGGAAAGACTGATACAGA	0.532													11	52					0	0	0.000673444	0	0
TMEM63B	55362	broad.mit.edu	37	6	44121907	44121907	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:44121907C>A	uc003owr.2	+	22	2272	c.2208C>A	c.(2206-2208)CTC>CTA	p.L736L	TMEM63B_uc003ows.2_Silent_p.L639L|TMEM63B_uc010jyz.2_Intron	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	736						integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			TCAAATACCTCAGTGCCCACA	0.587													7	129					0.000442599	0.00445669	0.000442599	1	0
RUNX2	860	broad.mit.edu	37	6	45480097	45480097	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:45480097G>C	uc011dvx.1	+	7	1184	c.974G>C	c.(973-975)CGG>CCG	p.R325P	RUNX2_uc011dvy.1_Missense_Mutation_p.R325P|RUNX2_uc003oxt.2_Missense_Mutation_p.R311P	NM_001024630	NP_001019801	Q13950	RUNX2_HUMAN	runt-related transcription factor 2 isoform a	325	Pro/Ser/Thr-rich.				negative regulation of transcription, DNA-dependent|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						TCTTCCACACGGGGCACTGGG	0.592													4	65					0	0	3.59834e-05	0	0
TDRD6	221400	broad.mit.edu	37	6	46663583	46663583	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:46663583G>A	uc003oyj.2	+	2	6072	c.6072G>A	c.(6070-6072)CTG>CTA	p.L2024L	TDRD6_uc010jze.2_Silent_p.L2018L	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	2024					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			CCTACACTCTGAAAGCCTTTA	0.368													34	133					0	0	0.00058488	0	0
PLA2G7	7941	broad.mit.edu	37	6	46682199	46682199	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:46682199G>T	uc010jzf.2	-	5	737	c.468C>A	c.(466-468)TTC>TTA	p.F156L	PLA2G7_uc010jzg.1_Missense_Mutation_p.F156L|PLA2G7_uc011dwd.1_Missense_Mutation_p.F111L|PLA2G7_uc011dwe.1_Missense_Mutation_p.F29L	NM_005084	NP_005075	Q13093	PAFA_HUMAN	phospholipase A2, group VII	156					inflammatory response|lipid catabolic process	extracellular space	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding				0			Lung(136;0.192)			AACATTACCTGAATGCCCCAA	0.398													9	190					0.000151284	0.00173001	0.000151284	1	0
CRISP2	7180	broad.mit.edu	37	6	49663582	49663582	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:49663582C>G	uc003ozq.2	-	9	827	c.571G>C	c.(571-573)GGT>CGT	p.G191R	CRISP2_uc003ozl.2_Missense_Mutation_p.G191R|CRISP2_uc003ozn.2_Missense_Mutation_p.G191R|CRISP2_uc003ozr.2_Missense_Mutation_p.G191R|CRISP2_uc003ozo.2_Missense_Mutation_p.G191R|CRISP2_uc003ozm.2_Missense_Mutation_p.G226R|CRISP2_uc003ozp.2_Missense_Mutation_p.G191R	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	191						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			TCAGGGCAACCGGCACAAGGT	0.308													4	72					0	0	8.12818e-05	0	0
MCM3	4172	broad.mit.edu	37	6	52138039	52138039	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:52138039G>T	uc003pan.1	-	11	1775	c.1665C>A	c.(1663-1665)ACC>ACA	p.T555T	MCM3_uc011dwu.1_Silent_p.T509T	NM_002388	NP_002379	P25205	MCM3_HUMAN	minichromosome maintenance complex component 3	555					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	alpha DNA polymerase:primase complex|centrosome|MCM complex|perinuclear region of cytoplasm	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)|lung(1)|skin(1)	3	Lung NSC(77;0.0931)					TTTTCTTCTTGGTCCCATGTA	0.423													7	162					0.000978159	0.00917326	0.000978159	1	0
ICK	22858	broad.mit.edu	37	6	52883141	52883141	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:52883141C>T	uc003pbh.2	-	8	1140	c.650G>A	c.(649-651)GGG>GAG	p.G217E	ICK_uc003pbi.2_Missense_Mutation_p.G217E|ICK_uc003pbj.2_Missense_Mutation_p.G217E	NM_016513	NP_057597	Q9UPZ9	ICK_HUMAN	intestinal cell kinase	217	Protein kinase.				intracellular protein kinase cascade|multicellular organismal development	cytosol|nucleus	ATP binding|cyclin-dependent protein kinase activity|magnesium ion binding			ovary(1)|large_intestine(1)|lung(1)|kidney(1)|central_nervous_system(1)	5	Lung NSC(77;0.103)					TTTTGGTGTCCCCAGCACTTG	0.507													7	253					0	0	0.000274275	0	0
LRRC1	55227	broad.mit.edu	37	6	53761345	53761345	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:53761345C>A	uc003pcd.1	+	5	773	c.496C>A	c.(496-498)CTT>ATT	p.L166I		NM_018214	NP_060684	Q9BTT6	LRRC1_HUMAN	leucine rich repeat containing 1	166	LRR 7.					cytoplasm|membrane				ovary(1)	1	Lung NSC(77;0.0147)			BRCA - Breast invasive adenocarcinoma(397;0.0745)		TCTTACATATCTTCCTGAGTG	0.333													8	159					1.08611e-07	1.41337e-06	0.000978159	1	0
FAM83B	222584	broad.mit.edu	37	6	54735312	54735312	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:54735312G>C	uc003pck.2	+	2	384	c.268G>C	c.(268-270)GGG>CGG	p.G90R		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	90										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					CTTATCTTCAGGGACCTACTG	0.438													4	122					0	0	0.000157383	0	0
DST	667	broad.mit.edu	37	6	56458982	56458982	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:56458982C>G	uc003pdf.2	-	42	5876	c.5848G>C	c.(5848-5850)GAG>CAG	p.E1950Q	DST_uc003pcz.3_Missense_Mutation_p.E1772Q|DST_uc011dxj.1_Missense_Mutation_p.E1801Q|DST_uc011dxk.1_Missense_Mutation_p.E1812Q|DST_uc003pcy.3_Missense_Mutation_p.E1446Q|DST_uc010kaa.1_RNA	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	3858					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			ATGATCTTCTCGTGTTGGGCC	0.468													4	204					0	0	0.000602214	0	0
DST	667	broad.mit.edu	37	6	56490034	56490034	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:56490034C>G	uc003pdf.2	-	34	4680	c.4652G>C	c.(4651-4653)CGG>CCG	p.R1551P	DST_uc003pcz.3_Missense_Mutation_p.R1373P|DST_uc011dxj.1_Missense_Mutation_p.R1402P|DST_uc011dxk.1_Missense_Mutation_p.R1413P|DST_uc003pcy.3_Missense_Mutation_p.R1047P|DST_uc003pdb.2_Missense_Mutation_p.R1047P|DST_uc003pdc.3_Missense_Mutation_p.R1047P|DST_uc003pdd.3_Missense_Mutation_p.R1047P	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	1373					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			TACCATGGCCCGGTAGGTCAT	0.343													4	199					0	0	0.00024832	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62688029	62688029	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:62688029C>G	uc003peg.2	-	4	672	c.425G>C	c.(424-426)GGG>GCG	p.G142A		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	142					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		ATAAGCTTCCCCAGGTGGAGC	0.388													4	87					0	0	8.12818e-05	0	0
MCART3P	442229	broad.mit.edu	37	6	66499039	66499039	+	RNA	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:66499039G>A	uc011dxw.1	+	1		c.1268G>A				NR_026540				Homo sapiens mitochondrial carrier triple repeat 3 pseudogene, mRNA (cDNA clone IMAGE:4821649).												0						AGATTGGTGGGGAATTTCAGT	0.403													6	75					0	0	0.000157383	0	0
FILIP1	27145	broad.mit.edu	37	6	76023677	76023677	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:76023677G>C	uc003pia.2	-	5	2244	c.1871C>G	c.(1870-1872)CCG>CGG	p.P624R	FILIP1_uc003phy.1_Missense_Mutation_p.P624R|FILIP1_uc003phz.2_Missense_Mutation_p.P525R|FILIP1_uc010kbe.2_Missense_Mutation_p.P627R|FILIP1_uc003pib.1_Missense_Mutation_p.P376R	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	624	Potential.									skin(3)|ovary(1)	4						ATTATCTTCCGGGCAGGTGAG	0.413													6	224					0	0	3.59834e-05	0	0
IMPG1	3617	broad.mit.edu	37	6	76660673	76660673	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:76660673G>C	uc003pik.1	-	13	1560	c.1430C>G	c.(1429-1431)CCA>CGA	p.P477R		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	477					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				GGTGAGCCCTGGTACTAGCAT	0.493													4	54					0	0	3.59834e-05	0	0
TTK	7272	broad.mit.edu	37	6	80717591	80717591	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:80717591T>C	uc003pjc.2	+	3	279	c.205T>C	c.(205-207)TTG>CTG	p.L69L	TTK_uc003pjb.3_Silent_p.L69L	NM_003318	NP_003309	P33981	TTK_HUMAN	TTK protein kinase	69					mitotic cell cycle spindle assembly checkpoint|mitotic spindle organization|positive regulation of cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation	spindle	ATP binding|identical protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(4)|stomach(2)|lung(2)|large_intestine(2)|pancreas(1)	11		all_cancers(76;0.00177)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)|all_epithelial(107;0.2)		BRCA - Breast invasive adenocarcinoma(397;0.0321)		GTTGAGTTTGTTGCTCAAACT	0.378													3	59					0	0	6.4e-05	0	0
DOPEY1	23033	broad.mit.edu	37	6	83806788	83806788	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:83806788C>G	uc003pjs.1	+	3	352	c.92C>G	c.(91-93)TCC>TGC	p.S31C	DOPEY1_uc011dyy.1_Missense_Mutation_p.S31C|DOPEY1_uc010kbl.1_Missense_Mutation_p.S31C	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	31					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		TTTGAATACTCCAGTGAATGG	0.348													5	242					0	0	0.000442599	0	0
ME1	4199	broad.mit.edu	37	6	84025035	84025035	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:84025035G>A	uc003pjy.2	-	6	804	c.698C>T	c.(697-699)TCT>TTT	p.S233F	ME1_uc011dzb.1_Missense_Mutation_p.S158F|ME1_uc011dzc.1_Missense_Mutation_p.S67F	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	233					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	ATACTTGGAAGAAACTGCCTC	0.308													16	72					0	0	0.000308642	0	0
ME1	4199	broad.mit.edu	37	6	84117585	84117585	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:84117585C>A	uc003pjy.2	-	2	220	c.114G>T	c.(112-114)TTG>TTT	p.L38F	ME1_uc011dzb.1_Intron|ME1_uc011dzc.1_Intron	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	38					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	CATGAATGTTCAATTGCTGTC	0.403													7	154					1.12685e-05	0.000138146	0.000274275	1	0
PRSS35	167681	broad.mit.edu	37	6	84233616	84233616	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:84233616G>C	uc003pjz.2	+	2	619	c.456G>C	c.(454-456)ACG>ACC	p.T152T	PRSS35_uc010kbm.2_Silent_p.T152T	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	152	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		AGCTTTCCACGGGCTGTAGTG	0.478													4	111					0	0	0.000157383	0	0
SNX14	57231	broad.mit.edu	37	6	86282062	86282062	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:86282062C>G	uc003pkr.2	-	3	485	c.292G>C	c.(292-294)GGT>CGT	p.G98R	SNX14_uc003pkq.2_5'UTR|SNX14_uc011dzg.1_Missense_Mutation_p.G46R|SNX14_uc003pks.2_Missense_Mutation_p.G98R|SNX14_uc003pkt.2_Missense_Mutation_p.G98R	NM_153816	NP_722523	Q9Y5W7	SNX14_HUMAN	sorting nexin 14 isoform a	98					cell communication|protein transport	integral to membrane	phosphatidylinositol binding|signal transducer activity				0		all_cancers(76;4.83e-07)|Acute lymphoblastic leukemia(125;3.3e-08)|Prostate(29;2.55e-07)|all_hematologic(105;3.66e-05)|all_epithelial(107;0.000695)|Lung NSC(302;0.197)|all_lung(197;0.24)		BRCA - Breast invasive adenocarcinoma(108;0.0423)		CAGCTATGACCTTGAGGAAAT	0.318													4	209					0	0	3.59834e-05	0	0
SYNCRIP	10492	broad.mit.edu	37	6	86350217	86350217	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:86350217C>G	uc003pla.2	-	3	755	c.214G>C	c.(214-216)GGT>CGT	p.G72R	SYNCRIP_uc003pku.2_Missense_Mutation_p.G72R|SYNCRIP_uc003pkw.2_Missense_Mutation_p.G72R|SYNCRIP_uc003pky.2_5'UTR|SYNCRIP_uc003pkv.2_Missense_Mutation_p.G72R|SYNCRIP_uc003pkx.2_5'UTR|SYNCRIP_uc003pkz.2_Missense_Mutation_p.G72R	NM_006372	NP_006363	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA	72					CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			ovary(2)	2		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		GCCAATGCACCGTCTTCATTG	0.303													5	147					0	0	0.000602214	0	0
C6orf165	154313	broad.mit.edu	37	6	88136342	88136342	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:88136342G>C	uc003plv.2	+	8	1031	c.939G>C	c.(937-939)GCG>GCC	p.A313A	C6orf165_uc003plw.2_Silent_p.A125A|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Silent_p.A313A	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	313										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		CAAAGATAGCGGTCCCAACAT	0.353													3	70					0	0	0.00024832	0	0
RARS2	57038	broad.mit.edu	37	6	88229410	88229410	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:88229410G>C	uc003pme.2	-	14	1188	c.1128C>G	c.(1126-1128)CCC>CCG	p.P376P	RARS2_uc003pmb.2_Silent_p.P201P|RARS2_uc003pmc.2_Silent_p.P201P|RARS2_uc003pmd.2_Silent_p.P13P|RARS2_uc003pmf.2_RNA	NM_020320	NP_064716	Q5T160	SYRM_HUMAN	arginyl-tRNA synthetase 2, mitochondrial	376					arginyl-tRNA aminoacylation	mitochondrial matrix	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|central_nervous_system(1)	3		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0456)		CTACTCCAAAGGGCACGTGCT	0.418													4	80					0	0	3.59834e-05	0	0
UBE2J1	51465	broad.mit.edu	37	6	90042828	90042828	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:90042828G>T	uc010kcb.2	-	8	828	c.655C>A	c.(655-657)CAG>AAG	p.Q219K	UBE2J1_uc003pnc.2_Missense_Mutation_p.Q219K	NM_016021	NP_057105	Q9Y385	UB2J1_HUMAN	ubiquitin-conjugating enzyme E2, J1	219	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	ATP binding|ubiquitin-protein ligase activity				0		all_cancers(76;1.65e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.45e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;2.5e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0139)		GTAGCACCCTGGAATGTTGTA	0.378													7	150					0.000442599	0.00445669	0.000442599	1	0
MDN1	23195	broad.mit.edu	37	6	90360505	90360505	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:90360505C>G	uc003pnn.1	-	96	16093	c.15977G>C	c.(15976-15978)CGG>CCG	p.R5326P		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	5326					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TTCACATAACCGTTGTGAAAG	0.493													3	66					0	0	0.000602214	0	0
MDN1	23195	broad.mit.edu	37	6	90400532	90400532	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:90400532C>G	uc003pnn.1	-	64	10725	c.10609G>C	c.(10609-10611)GAG>CAG	p.E3537Q		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	3537					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CGTTCCTGCTCATCCCACTCA	0.478													3	63					0	0	0.000602214	0	0
MDN1	23195	broad.mit.edu	37	6	90428501	90428501	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:90428501C>G	uc003pnn.1	-	42	6422	c.6306G>C	c.(6304-6306)CTG>CTC	p.L2102L		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	2102					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CAAATCCACCCAGCAGCTCAG	0.488													4	110					0	0	3.59834e-05	0	0
MDN1	23195	broad.mit.edu	37	6	90500078	90500078	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:90500078T>C	uc003pnn.1	-	6	1014	c.898A>G	c.(898-900)AGG>GGG	p.R300G	MDN1_uc003pnp.1_Missense_Mutation_p.R300G	NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	300					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		ACATAAGACCTAAGGGCCAGC	0.488													4	187					0	0	0.00024832	0	0
CASP8AP2	9994	broad.mit.edu	37	6	90576383	90576383	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:90576383C>A	uc003pnr.2	+	8	3570	c.3374C>A	c.(3373-3375)CCA>CAA	p.P1125Q	CASP8AP2_uc003pns.2_Intron|CASP8AP2_uc003pnt.2_Missense_Mutation_p.P1125Q|CASP8AP2_uc011dzz.1_Missense_Mutation_p.P1125Q	NM_001137667	NP_001131139	Q9UKL3	C8AP2_HUMAN	caspase 8 associated protein 2	1125					cell cycle|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasm|nucleus	caspase activator activity|death receptor binding|transcription corepressor activity			ovary(2)	2		all_cancers(76;3.64e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.45e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;4.69e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0953)		CAGCAACTACCAGATATGAAA	0.313													6	60					0.000442599	0.00445669	0.000442599	1	0
BACH2	60468	broad.mit.edu	37	6	90642470	90642470	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:90642470C>A	uc011eab.1	-	9	2992	c.2183G>T	c.(2182-2184)CGG>CTG	p.R728L	BACH2_uc003pnw.2_Missense_Mutation_p.R728L	NM_021813	NP_068585	Q9BYV9	BACH2_HUMAN	BTB and CNC homology 1, basic leucine zipper	728						nucleus	protein dimerization activity|sequence-specific DNA binding			ovary(3)|pancreas(1)|lung(1)|skin(1)	6		all_cancers(76;7.37e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.0063)		BRCA - Breast invasive adenocarcinoma(108;0.0799)		AGGGCAATACCGATGCAGGGC	0.587													5	64					8.12818e-05	0.000938396	8.12818e-05	1	0
SFRS18	25957	broad.mit.edu	37	6	99852494	99852494	+	Missense_Mutation	SNP	G	C	C	rs143514007		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:99852494G>C	uc003ppo.3	-	9	1315	c.1087C>G	c.(1087-1089)CGC>GGC	p.R363G	SFRS18_uc003ppl.2_5'Flank|SFRS18_uc003ppp.3_Missense_Mutation_p.R363G|SFRS18_uc011eag.1_Missense_Mutation_p.R363G	NM_032870	NP_116259	Q8TF01	PNISR_HUMAN	splicing factor, arginine/serine-rich 130	363						nuclear speck					0		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0631)		GTTGCTTTGCGGTGTGCATCT	0.368													5	71					0	0	0.000157383	0	0
ASCC3	10973	broad.mit.edu	37	6	101037557	101037557	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:101037557G>C	uc003pqk.2	-	36	5832	c.5503C>G	c.(5503-5505)CGC>GGC	p.R1835G		NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	1835	SEC63 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		GGCTTCAAGCGGTCCTTGAAC	0.343													4	139					0	0	3.59834e-05	0	0
SCML4	256380	broad.mit.edu	37	6	108042076	108042076	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:108042076G>A	uc010kdf.2	-	6	1055	c.804C>T	c.(802-804)TAC>TAT	p.Y268Y	SCML4_uc003prz.3_Silent_p.Y210Y|SCML4_uc011eam.1_Silent_p.Y268Y|SCML4_uc003pry.3_Silent_p.Y26Y|SCML4_uc003psa.3_Silent_p.Y239Y	NM_198081	NP_932347	Q8N228	SCML4_HUMAN	sex comb on midleg-like 4	268					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		all_cancers(87;3.26e-06)|Acute lymphoblastic leukemia(125;3.08e-08)|all_hematologic(75;1.15e-06)|all_epithelial(87;0.00142)|Colorectal(196;0.0316)		BRCA - Breast invasive adenocarcinoma(108;0.01)|Epithelial(106;0.0509)|all cancers(137;0.0586)|OV - Ovarian serous cystadenocarcinoma(136;0.0758)		GCCTCTTGCAGTACAGCGAGG	0.637													7	51					0	0	0.000157383	0	0
ARMC2	84071	broad.mit.edu	37	6	109286189	109286189	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:109286189G>C	uc003pss.3	+	17	2466	c.2292G>C	c.(2290-2292)GTG>GTC	p.V764V	ARMC2_uc011eao.1_Silent_p.V599V	NM_032131	NP_115507	Q8NEN0	ARMC2_HUMAN	armadillo repeat containing 2	764	ARM 12.						binding				0		all_cancers(87;1.14e-07)|Acute lymphoblastic leukemia(125;2.3e-10)|all_hematologic(75;3.3e-08)|all_epithelial(87;0.000111)|Colorectal(196;0.03)|all_lung(197;0.11)		Epithelial(106;0.000197)|BRCA - Breast invasive adenocarcinoma(108;0.000236)|all cancers(137;0.000279)|OV - Ovarian serous cystadenocarcinoma(136;0.00434)		TCAGGTTAGTGGACTGTTTAA	0.338													5	280					0	0	3.59834e-05	0	0
C6orf182	285753	broad.mit.edu	37	6	109466473	109466473	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:109466473C>A	uc010kdk.2	+	4	626	c.49C>A	c.(49-51)CCA>ACA	p.P17T	C6orf182_uc003psv.3_Missense_Mutation_p.P17T|C6orf182_uc003psw.3_Missense_Mutation_p.P17T|C6orf182_uc003psx.3_Missense_Mutation_p.P17T|C6orf182_uc010kdl.2_Missense_Mutation_p.P17T|C6orf182_uc003psy.3_Missense_Mutation_p.P17T	NM_001083535	NP_001077004	Q8IYX8	CE57L_HUMAN	hypothetical protein LOC285753	17						microtubule|microtubule organizing center					0		all_cancers(87;4.45e-07)|Acute lymphoblastic leukemia(125;2.15e-10)|all_hematologic(75;3.25e-08)|all_epithelial(87;0.000254)|Colorectal(196;0.0293)|all_lung(197;0.11)		BRCA - Breast invasive adenocarcinoma(108;0.00123)|Epithelial(106;0.0022)|all cancers(137;0.00405)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)		TCATAAACCTCCAGAAAGAGT	0.363													7	184					6.40141e-05	0.00075092	0.000978159	1	0
FAM26E	254228	broad.mit.edu	37	6	116837118	116837118	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:116837118C>A	uc003pwy.2	+	2	948	c.896C>A	c.(895-897)ACA>AAA	p.T299K	BET3L_uc011ebh.1_Intron	NM_153711	NP_714922	Q8N5C1	FA26E_HUMAN	hypothetical protein LOC254228	299						integral to membrane					0		all_cancers(87;0.0608)|all_epithelial(87;0.05)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0242)|all cancers(137;0.0419)|OV - Ovarian serous cystadenocarcinoma(136;0.0671)|Epithelial(106;0.212)		GATGAGACGACAATGGTCCTT	0.493													4	58					3.59834e-05	0.000429	3.59834e-05	1	0
GPRC6A	222545	broad.mit.edu	37	6	117114203	117114203	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:117114203C>T	uc003pxj.1	-	6	1905	c.1883G>A	c.(1882-1884)GGG>GAG	p.G628E	GPRC6A_uc003pxk.1_Missense_Mutation_p.G453E|GPRC6A_uc003pxl.1_Missense_Mutation_p.G557E	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	628	Cytoplasmic (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		TCTTAATCCCCCGGATGATTT	0.413													6	42					0	0	3.59834e-05	0	0
DCBLD1	285761	broad.mit.edu	37	6	117860440	117860440	+	Silent	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:117860440A>G	uc003pxs.2	+	9	1124	c.999A>G	c.(997-999)ACA>ACG	p.T333T	GOPC_uc003pxq.1_Intron|DCBLD1_uc003pxr.1_Silent_p.T333T|DCBLD1_uc003pxt.1_5'UTR	NM_173674	NP_775945	Q8N8Z6	DCBD1_HUMAN	discoidin, CUB and LCCL domain containing 1	333	F5/8 type C.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(1)	1		all_cancers(87;0.171)		GBM - Glioblastoma multiforme(226;0.0447)|OV - Ovarian serous cystadenocarcinoma(136;0.0921)|all cancers(137;0.125)		CAGGATCTACACAGTCGAACT	0.264													4	303					0	0	0.000157383	0	0
NCOA7	135112	broad.mit.edu	37	6	126243890	126243890	+	Silent	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:126243890A>G	uc010kes.2	+	15	2882	c.2433A>G	c.(2431-2433)TTA>TTG	p.L811L	NCOA7_uc003qae.3_Silent_p.L811L|NCOA7_uc003qah.2_Silent_p.L800L|NCOA7_uc003qai.2_Silent_p.L811L|NCOA7_uc010ket.2_Silent_p.L696L|NCOA7_uc003qak.2_Silent_p.L88L	NM_181782	NP_861447	Q8NI08	NCOA7_HUMAN	nuclear receptor coactivator 7 isoform 1	811	TLD.				cell wall macromolecule catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (4;0.0803)|GBM - Glioblastoma multiforme(226;0.0193)|all cancers(137;0.237)		ATAGCACGTTAGAGCACGGGA	0.507													3	71					0	0	0.00024832	0	0
LAMA2	3908	broad.mit.edu	37	6	129637032	129637032	+	Silent	SNP	C	T	T	rs138702650		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:129637032C>T	uc003qbn.2	+	26	3966	c.3861C>T	c.(3859-3861)ATC>ATT	p.I1287I	LAMA2_uc003qbo.2_Silent_p.I1287I	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1287	Laminin IV type A 2.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity	p.I1287I(1)		ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CTAGAATTATCGTCAGGCATA	0.418													28	119					0	0	0.000279167	0	0
EPB41L2	2037	broad.mit.edu	37	6	131215489	131215489	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:131215489G>T	uc003qch.2	-	10	1664	c.1482C>A	c.(1480-1482)TTC>TTA	p.F494L	EPB41L2_uc003qcg.1_Missense_Mutation_p.F494L|EPB41L2_uc011eby.1_Missense_Mutation_p.F494L|EPB41L2_uc003qci.2_Missense_Mutation_p.F494L|EPB41L2_uc010kfk.2_Missense_Mutation_p.F494L|EPB41L2_uc010kfl.1_Missense_Mutation_p.F494L	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	494	FERM.				cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		ATTACCTGTAGAAAGTATGAT	0.289													7	118					0.000978159	0.00917326	0.000978159	1	0
ENPP3	5169	broad.mit.edu	37	6	132067980	132067980	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:132067980C>G	uc003qcu.3	+	26	2859	c.2512C>G	c.(2512-2514)CGG>GGG	p.R838G	ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Missense_Mutation_p.R838G	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	838	Extracellular (Potential).|Nuclease.				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		TCACATTGCCCGGGTCCGTGA	0.393													4	99					0	0	0.00024832	0	0
C6orf192	116843	broad.mit.edu	37	6	133095407	133095407	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:133095407C>A	uc003qdw.1	-	9	1095	c.943G>T	c.(943-945)GGG>TGG	p.G315W	C6orf192_uc010kgd.1_RNA|C6orf192_uc011eco.1_Missense_Mutation_p.G189W	NM_052831	NP_439896	Q6NT16	CF192_HUMAN	hypothetical protein LOC116843	315	Helical; (Potential).				transmembrane transport	integral to membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(155;0.00303)|GBM - Glioblastoma multiforme(226;0.0265)		ATGTAGCACCCGGCTGTGATT	0.398													7	177					0.000157383	0.00173811	0.000157383	1	0
PDE7B	27115	broad.mit.edu	37	6	136500203	136500203	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:136500203T>C	uc003qgp.2	+	10	1175	c.872T>C	c.(871-873)TTG>TCG	p.L291S	uc003qgq.1_Intron|PDE7B_uc003qgr.2_Missense_Mutation_p.L343S	NM_018945	NP_061818	Q9NP56	PDE7B_HUMAN	phosphodiesterase 7B	291	Catalytic (By similarity).				signal transduction|synaptic transmission	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(1)	1	Colorectal(23;0.24)			OV - Ovarian serous cystadenocarcinoma(155;0.0136)|GBM - Glioblastoma multiforme(68;0.0147)	Dyphylline(DB00651)|Ketotifen(DB00920)	AATGAATTTTTGACCAGATTG	0.418													20	79					0	0	0.000958276	0	0
KIAA1244	57221	broad.mit.edu	37	6	138599635	138599635	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:138599635C>A	uc003qhu.2	+	13	2176	c.2176C>A	c.(2176-2178)CAG>AAG	p.Q726K		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	726	SEC7.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		CCTCAGCTTCCAGATGCTGAT	0.562													9	124					0.000978159	0.00917326	0.000978159	1	0
KIAA1244	57221	broad.mit.edu	37	6	138640902	138640902	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:138640902C>A	uc003qhu.2	+	28	4537	c.4537C>A	c.(4537-4539)CGC>AGC	p.R1513S		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	1513					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		CGTTTGGCTCCGCCGGAGCCA	0.498													7	129					0.000274275	0.00290969	0.000274275	1	0
PEX3	8504	broad.mit.edu	37	6	143793363	143793363	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:143793363C>A	uc003qjl.2	+	8	907	c.645C>A	c.(643-645)CTC>CTA	p.L215L	PEX3_uc011edx.1_Silent_p.L215L	NM_003630	NP_003621	P56589	PEX3_HUMAN	peroxisomal biogenesis factor 3	215	Cytoplasmic (Potential).				protein import into peroxisome membrane|transmembrane transport	integral to peroxisomal membrane	protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(155;5.73e-06)|GBM - Glioblastoma multiforme(68;0.0117)		TCAGAAATCTCGTTGAGCAGC	0.353													6	147					0.000157383	0.00173811	0.000157383	1	0
KATNA1	11104	broad.mit.edu	37	6	149959581	149959581	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:149959581G>C	uc003qmr.1	-	1	148	c.103C>G	c.(103-105)CAA>GAA	p.Q35E	KATNA1_uc003qms.2_Missense_Mutation_p.Q35E|KATNA1_uc003qmt.2_Missense_Mutation_p.Q35E|KATNA1_uc011eed.1_Missense_Mutation_p.Q35E	NM_007044	NP_008975	O75449	KTNA1_HUMAN	katanin p60 subunit A 1	35	Interaction with microtubule.				cell division|interphase of mitotic cell cycle|mitosis	microtubule|microtubule organizing center|spindle pole	ATP binding|microtubule binding|microtubule-severing ATPase activity|protein heterodimerization activity			skin(1)	1		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;2.95e-12)|GBM - Glioblastoma multiforme(68;0.173)		TTGTTCATTTGGTCAAGAACT	0.398													4	249					0	0	0.00024832	0	0
LATS1	9113	broad.mit.edu	37	6	149982925	149982925	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:149982925C>G	uc003qmu.1	-	8	3881	c.3333G>C	c.(3331-3333)TCG>TCC	p.S1111S	LATS1_uc010kif.1_Silent_p.S1006S	NM_004690	NP_004681	O95835	LATS1_HUMAN	LATS homolog 1	1111					cell division|cytoplasmic sequestering of protein|G2/M transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|positive regulation of peptidyl-serine phosphorylation|regulation of actin filament polymerization|sister chromatid segregation	microtubule organizing center|spindle pole	ATP binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;6.93e-13)|GBM - Glioblastoma multiforme(68;0.116)		CATCTTCATCCGACTGCTGCT	0.358													4	180					0	0	0.00024832	0	0
RAET1E	135250	broad.mit.edu	37	6	150209777	150209777	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:150209777G>C	uc003qnl.1	-	4	709	c.649C>G	c.(649-651)CAC>GAC	p.H217D	uc003qni.1_Intron|RAET1E_uc003qnj.2_Intron|RAET1E_uc003qnk.1_Missense_Mutation_p.H181D|RAET1E_uc010kih.1_RNA	NM_139165	NP_631904	Q8TD07	N2DL4_HUMAN	retinoic acid early transcript 1E precursor	217	Extracellular (Potential).				antigen processing and presentation|immune response|regulation of immune response	integral to membrane|MHC class I protein complex	protein binding				0		Ovarian(120;0.0907)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.58e-12)		GAAGACCAGTGGATATCTGAA	0.343													4	38					0	0	0.00024832	0	0
PLEKHG1	57480	broad.mit.edu	37	6	151125869	151125869	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:151125869C>G	uc003qny.1	+	8	1216	c.904C>G	c.(904-906)CGG>GGG	p.R302G	PLEKHG1_uc011eel.1_Missense_Mutation_p.R342G|PLEKHG1_uc011eem.1_Missense_Mutation_p.R361G|PLEKHG1_uc003qnz.2_Missense_Mutation_p.R302G	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	302					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		GCACGCGGTCCGGTTACAGGT	0.522													3	48					0	0	6.4e-05	0	0
SYNE1	23345	broad.mit.edu	37	6	152454552	152454552	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:152454552C>G	uc010kiw.2	-	143	26462	c.25860G>C	c.(25858-25860)CTG>CTC	p.L8620L	SYNE1_uc010kiv.2_Silent_p.L3144L|SYNE1_uc003qos.3_Silent_p.L3144L|SYNE1_uc003qot.3_Silent_p.L8572L|SYNE1_uc003qou.3_Silent_p.L8620L|SYNE1_uc003qop.3_Silent_p.L805L|SYNE1_uc011eez.1_Silent_p.L822L|SYNE1_uc003qoq.3_Silent_p.L822L|SYNE1_uc003qor.3_Silent_p.L1543L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	8620	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CAGCATTCACCAGTAGTTGGC	0.393										HNSCC(10;0.0054)			4	91					0	0	0.00024832	0	0
SYNE1	23345	broad.mit.edu	37	6	152614814	152614814	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:152614814G>A	uc010kiw.2	-	95	18523	c.17921C>T	c.(17920-17922)TCC>TTC	p.S5974F	SYNE1_uc010kiv.2_Missense_Mutation_p.S498F|SYNE1_uc003qos.3_Missense_Mutation_p.S498F|SYNE1_uc003qot.3_Missense_Mutation_p.S5903F|SYNE1_uc003qou.3_Missense_Mutation_p.S5974F|SYNE1_uc010kiy.1_Missense_Mutation_p.S149F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5974	Spectrin 20.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CGTAGAGATGGACTGGAGGGA	0.502										HNSCC(10;0.0054)			10	69					0	0	0.000442599	0	0
SYNE1	23345	broad.mit.edu	37	6	152652163	152652163	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:152652163G>C	uc010kiw.2	-	78	14259	c.13657C>G	c.(13657-13659)CGG>GGG	p.R4553G	SYNE1_uc003qot.3_Missense_Mutation_p.R4482G|SYNE1_uc003qou.3_Missense_Mutation_p.R4553G|SYNE1_uc010kiz.2_Missense_Mutation_p.R308G	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	4553	Cytoplasmic (Potential).|Spectrin 13.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCTTGTAACCGGTGACTGCAC	0.393										HNSCC(10;0.0054)			4	198					0	0	3.59834e-05	0	0
CNKSR3	154043	broad.mit.edu	37	6	154762499	154762499	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:154762499C>G	uc003qpy.2	-	4	939	c.434G>C	c.(433-435)GGG>GCG	p.G145A		NM_173515	NP_775786	Q6P9H4	CNKR3_HUMAN	CNKSR family member 3	145	CRIC.				negative regulation of ERK1 and ERK2 cascade|negative regulation of peptidyl-serine phosphorylation|positive regulation of sodium ion transport	cytoplasm|membrane				ovary(2)|breast(1)|skin(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;5.03e-11)|BRCA - Breast invasive adenocarcinoma(81;0.00627)		ATCAGTGATCCCTGTAAACGG	0.453													6	100					0	0	3.59834e-05	0	0
ARID1B	57492	broad.mit.edu	37	6	157505535	157505535	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:157505535C>A	uc003qqn.2	+	13	3614	c.3462C>A	c.(3460-3462)ACC>ACA	p.T1154T	ARID1B_uc003qqo.2_Silent_p.T1114T|ARID1B_uc003qqp.2_Silent_p.T1101T|ARID1B_uc010kjl.2_Silent_p.T299T	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1159					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		CCGGGGACACCAAAAAGCAGC	0.612													5	48					7.48243e-07	9.56199e-06	0.000442599	1	0
OSTCL	202459	broad.mit.edu	37	6	159262929	159262929	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:159262929A>G	uc003qrw.2	-	3	415	c.184T>C	c.(184-186)TTC>CTC	p.F62L		NM_145303	NP_660346			oligosaccharyltransferase complex subunit-like												0						GTAAACAGGAAGCTGGATGCA	0.408													4	126					0	0	0.00024832	0	0
PNLDC1	154197	broad.mit.edu	37	6	160221773	160221773	+	Missense_Mutation	SNP	C	G	G	rs140968331	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:160221773C>G	uc003qsx.1	+	2	184	c.13C>G	c.(13-15)CGA>GGA	p.R5G	PNLDC1_uc003qsy.1_Intron	NM_173516	NP_775787	Q8NA58	PNDC1_HUMAN	poly(A)-specific ribonuclease (PARN)-like domain	5						integral to membrane|nucleus	nucleic acid binding				0		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;1.55e-18)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		GTTCTGCACCCGAGGACTGCT	0.562													4	154					0	0	0.000157383	0	0
LPAL2	80350	broad.mit.edu	37	6	160921913	160921913	+	RNA	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:160921913G>A	uc003qtj.2	-	2		c.226C>T			LPAL2_uc011efy.1_RNA	NR_028093				Homo sapiens cDNA FLJ43922 fis, clone TESTI4012406.												0		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.214)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)		TATGTGCCTCGATAACTCTGT	0.463													39	145					0	0	0.00111076	0	0
TCP10	6953	broad.mit.edu	37	6	167789547	167789547	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:167789547G>C	uc003qvv.1	-	6	807	c.595C>G	c.(595-597)CGA>GGA	p.R199G	TCP10_uc003qvu.2_Missense_Mutation_p.R199G|TCP10_uc003qvw.2_3'UTR	NM_004610	NP_004601	Q12799	TCP10_HUMAN	t-complex 10	226						cytosol				breast(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;4.05e-20)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)|GBM - Glioblastoma multiforme(31;0.0386)		TGCGGACTTCGGGAAGATGGA	0.612													3	40					0	0	3.59834e-05	0	0
FAM120B	84498	broad.mit.edu	37	6	170657411	170657411	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:170657411G>C	uc003qxp.2	+	5	2298	c.2190G>C	c.(2188-2190)CAG>CAC	p.Q730H	FAM120B_uc003qxo.1_Missense_Mutation_p.Q730H|FAM120B_uc011ehd.1_Missense_Mutation_p.Q62H|FAM120B_uc010kla.1_RNA	NM_032448	NP_115824	Q96EK7	F120B_HUMAN	family with sequence similarity 120B	730					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			ovary(1)	1		Breast(66;0.000338)|Esophageal squamous(34;0.241)		OV - Ovarian serous cystadenocarcinoma(33;3.94e-22)|BRCA - Breast invasive adenocarcinoma(81;6.47e-06)|GBM - Glioblastoma multiforme(31;0.0899)		TCTTTGTCCAGGTAATGTCCA	0.502													4	55					0	0	0.00024832	0	0
SUN1	23353	broad.mit.edu	37	7	896021	896021	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:896021C>A	uc011jvp.1	+	13	1456	c.1377C>A	c.(1375-1377)ACC>ACA	p.T459T	GET4_uc003sjj.1_RNA|SUN1_uc003sjf.2_Silent_p.T376T|SUN1_uc011jvq.1_Silent_p.T356T|SUN1_uc003sjg.2_Silent_p.T364T|SUN1_uc011jvr.1_Silent_p.T257T|SUN1_uc003sji.2_Silent_p.T297T|SUN1_uc003sjk.2_Silent_p.T98T	NM_001130965	NP_001124437	O94901	SUN1_HUMAN	unc-84 homolog A isoform a	486	Perinuclear space.|Potential.				cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0						TAGAACAGACCAAGCAAAAAA	0.378													8	96					0.000673444	0.00655963	0.000673444	1	0
MICALL2	79778	broad.mit.edu	37	7	1489876	1489876	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:1489876C>G	uc003skj.3	-	2	339	c.192G>C	c.(190-192)CTG>CTC	p.L64L	MICALL2_uc003skl.1_RNA	NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	64	CH.					cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		GGCCACTCACCAGTTTATTGT	0.562													4	118					0	0	0.00024832	0	0
AMZ1	155185	broad.mit.edu	37	7	2752274	2752274	+	Missense_Mutation	SNP	G	C	C	rs143298706		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:2752274G>C	uc003smr.1	+	7	1620	c.1259G>C	c.(1258-1260)CGG>CCG	p.R420P	AMZ1_uc003sms.1_3'UTR|AMZ1_uc011jwa.1_Missense_Mutation_p.R169P	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	420							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		GCCCTGCAGCGGGAAGTGGCA	0.687													3	55					0	0	6.4e-05	0	0
GNA12	2768	broad.mit.edu	37	7	2771073	2771073	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:2771073G>T	uc003smu.2	-	4	1052	c.888C>A	c.(886-888)AAC>AAA	p.N296K	GNA12_uc011jwb.1_Missense_Mutation_p.N279K|GNA12_uc003smt.2_Missense_Mutation_p.N237K	NM_007353	NP_031379	Q03113	GNA12_HUMAN	guanine nucleotide binding protein (G protein)	296	GTP (By similarity).				G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|Rho protein signal transduction	brush border membrane|heterotrimeric G-protein complex	D5 dopamine receptor binding|G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)	1		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;1.02e-13)		GGTCCATCTTGTTGAGGAAGA	0.562													7	107					0.000673444	0.00655963	0.000673444	1	0
COL28A1	340267	broad.mit.edu	37	7	7410409	7410409	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:7410409C>A	uc003src.1	-	33	3130	c.3013G>T	c.(3013-3015)GGG>TGG	p.G1005W	COL28A1_uc011jxe.1_Missense_Mutation_p.G688W	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	1005					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		AGTTCTTCCCCTGACATCCCA	0.373													7	113					0.000274275	0.00290969	0.000274275	1	0
COL28A1	340267	broad.mit.edu	37	7	7529089	7529089	+	Splice_Site	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:7529089C>A	uc003src.1	-	13	1213	c.1096_splice	c.e13-1	p.G366_splice	COL28A1_uc011jxe.1_Splice_Site_p.G49_splice|COL28A1_uc003srd.2_Splice_Site	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor						cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		CTCTTTCTCCCTAAGAGAAAG	0.388													6	79					0.000274275	0.00290969	0.000274275	1	0
SCIN	85477	broad.mit.edu	37	7	12692309	12692310	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:12692309_12692310GG>AA	uc003ssn.3	+	16	2327_2328	c.2117_2118GG>AA	c.(2116-2118)TGG>TAA	p.W706*	SCIN_uc010ktt.2_RNA|SCIN_uc003sso.3_Nonsense_Mutation_p.W459*	NM_001112706	NP_001106177	Q9Y6U3	ADSV_HUMAN	scinderin isoform 1	706	Ca(2+)-dependent actin binding.				actin filament capping|actin filament severing|actin nucleation|calcium ion-dependent exocytosis|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of megakaryocyte differentiation|positive regulation of secretion|regulation of chondrocyte differentiation	cell cortex|cytoskeleton	1-phosphatidylinositol binding|actin filament binding|calcium ion binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding			ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.195)		TTCACAGGCTGGTTCCTGGGCT	0.45													24	117					0	0	6.4e-05	0	0
DGKB	1607	broad.mit.edu	37	7	14724932	14724932	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:14724932G>C	uc003ssz.2	-	9	954	c.767C>G	c.(766-768)GCC>GGC	p.A256G	DGKB_uc011jxt.1_Missense_Mutation_p.A249G|DGKB_uc003sta.2_Missense_Mutation_p.A256G|DGKB_uc011jxu.1_Missense_Mutation_p.A256G|DGKB_uc011jxv.1_Missense_Mutation_p.A256G	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	256	Phorbol-ester/DAG-type 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	GTTGCAATAGGCAGGTTTGTT	0.478													4	83					0	0	3.59834e-05	0	0
TMEM195	392636	broad.mit.edu	37	7	15240953	15240953	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:15240953C>A	uc003stb.1	-	13	1465	c.1295G>T	c.(1294-1296)GGA>GTA	p.G432V		NM_001004320	NP_001004320	Q6ZNB7	ALKMO_HUMAN	transmembrane protein 195	432	Helical; (Potential).				ether lipid metabolic process|fatty acid biosynthetic process|membrane lipid metabolic process	endoplasmic reticulum membrane|integral to membrane	glyceryl-ether monooxygenase activity|iron ion binding				0						GCTTCTAACTCCCCAGAAAGC	0.323													8	127					0.000274275	0.00290969	0.000274275	1	0
SOSTDC1	25928	broad.mit.edu	37	7	16502213	16502213	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:16502213C>G	uc003stg.2	-	2	762	c.581G>C	c.(580-582)CGG>CCG	p.R194P	SOSTDC1_uc003sth.2_Missense_Mutation_p.R218P	NM_015464	NP_056279	Q6X4U4	SOSD1_HUMAN	sclerostin domain containing 1 precursor	194					Wnt receptor signaling pathway					ovary(2)|central_nervous_system(1)	3	Lung NSC(10;0.185)			UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		GGCTCTTTTCCGCTCTCTGTG	0.488													4	103					0	0	3.59834e-05	0	0
ANKMY2	57037	broad.mit.edu	37	7	16685168	16685168	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:16685168G>C	uc003sti.2	-	1	231	c.31C>G	c.(31-33)CAG>GAG	p.Q11E	ANKMY2_uc010ktz.2_RNA|BZW2_uc011jxx.1_5'Flank|BZW2_uc003stl.2_5'Flank|BZW2_uc003stm.2_5'Flank|BZW2_uc003stj.2_5'Flank|BZW2_uc003stk.2_5'Flank	NM_020319	NP_064715	Q8IV38	ANKY2_HUMAN	ankyrin repeat and MYND domain containing 2	11						cilium	zinc ion binding			central_nervous_system(1)	1	Lung NSC(10;0.103)|all_lung(11;0.204)			UCEC - Uterine corpus endometrioid carcinoma (126;0.195)		TTCTCCTCCTGGGTCAGCTCG	0.388													4	189					0	0	8.12818e-05	0	0
MACC1	346389	broad.mit.edu	37	7	20199780	20199780	+	Nonsense_Mutation	SNP	C	T	T	rs140929570	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:20199780C>T	uc003sus.3	-	5	513	c.204G>A	c.(202-204)TGG>TGA	p.W68*	MACC1_uc010kug.2_Nonsense_Mutation_p.W68*	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	68					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						ACAGTTGATTCCAGAATGGAT	0.378													14	63					0	0	0.000566183	0	0
SP4	6671	broad.mit.edu	37	7	21469023	21469023	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:21469023G>T	uc003sva.2	+	3	421	c.240G>T	c.(238-240)TTG>TTT	p.L80F	SP4_uc003svb.2_5'UTR	NM_003112	NP_003103	Q02446	SP4_HUMAN	Sp4 transcription factor	80					regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(3)|skin(2)	5						GTCAAGGATTGGTGCAACTTC	0.443													6	111					0.000442599	0.00445669	0.000442599	1	0
DNAH11	8701	broad.mit.edu	37	7	21655874	21655874	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:21655874G>T	uc003svc.2	+	22	4090	c.4059G>T	c.(4057-4059)GTG>GTT	p.V1353V		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1353	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AGATTCATGTGGAACAGATGG	0.408									Kartagener_syndrome				6	63					0.000157383	0.00173811	0.000157383	1	0
IGF2BP3	10643	broad.mit.edu	37	7	23508119	23508119	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:23508119G>T	uc003swg.2	-	2	484	c.218C>A	c.(217-219)TCG>TAG	p.S73*	IGF2BP3_uc003swh.1_RNA	NM_006547	NP_006538	O00425	IF2B3_HUMAN	insulin-like growth factor 2 mRNA binding	73	RRM 1.				anatomical structure morphogenesis|negative regulation of translation|translation	cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			ovary(2)	2						TTTTGGGACCGAGTGCTCAAC	0.532													5	172					0.000442599	0.00445669	0.000442599	1	0
C7orf46	340277	broad.mit.edu	37	7	23740479	23740479	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:23740479C>A	uc003swo.3	+	6	909	c.820C>A	c.(820-822)CAG>AAG	p.Q274K	C7orf46_uc003swq.3_Missense_Mutation_p.Q238K|C7orf46_uc003swr.3_Missense_Mutation_p.Q180K|C7orf46_uc003swp.3_RNA|C7orf46_uc010kup.2_RNA	NM_199136	NP_954587	A4D161	CG046_HUMAN	hypothetical protein LOC340277 isoform 1	274											0						AAGACGATACCAGGAAAGGGT	0.348													16	333					0.000295444	0.00313186	0.000295444	1	0
OSBPL3	26031	broad.mit.edu	37	7	24911640	24911640	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:24911640G>C	uc003sxf.2	-	3	550	c.145C>G	c.(145-147)CAG>GAG	p.Q49E	OSBPL3_uc003sxd.2_RNA|OSBPL3_uc003sxe.2_RNA|OSBPL3_uc003sxg.2_Missense_Mutation_p.Q49E|OSBPL3_uc003sxh.2_Missense_Mutation_p.Q49E|OSBPL3_uc003sxi.2_Missense_Mutation_p.Q49E	NM_015550	NP_056365	Q9H4L5	OSBL3_HUMAN	oxysterol-binding protein-like protein 3 isoform	49					lipid transport		lipid binding|protein binding			skin(1)	1						GGTGGCTCCTGGGTGTAATTC	0.438													4	74					0	0	3.59834e-05	0	0
NFE2L3	9603	broad.mit.edu	37	7	26217610	26217610	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:26217610C>G	uc003sxq.2	+	2	890	c.618C>G	c.(616-618)TCC>TCG	p.S206S		NM_004289	NP_004280	Q9Y4A8	NF2L3_HUMAN	nuclear factor erythroid 2-like 3	206					transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			skin(3)|ovary(1)	4						ATCATAGTTCCCAGCATGAGG	0.398													4	122					0	0	0.00024832	0	0
CBX3	11335	broad.mit.edu	37	7	26246012	26246012	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:26246012G>A	uc003sxt.2	+	3	160	c.49G>A	c.(49-51)GGA>AGA	p.G17R	CBX3_uc003sxu.2_Missense_Mutation_p.G17R|CBX3_uc003sxv.2_Missense_Mutation_p.G17R	NM_007276	NP_009207	Q13185	CBX3_HUMAN	chromobox homolog 3	17					chromatin remodeling|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed chromosome, centromeric region|nuclear centromeric heterochromatin|nuclear euchromatin|nuclear inner membrane|spindle	enzyme binding|protein domain specific binding			ovary(1)	1						AAAACAGAATGGAAAGAGTAA	0.328													15	76					0	0	0.00074312	0	0
HOXA9	3205	broad.mit.edu	37	7	27205056	27205056	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:27205056C>G	uc003syt.2	-	1	94	c.21G>C	c.(19-21)CTG>CTC	p.L7L		NM_152739	NP_689952	P31269	HXA9_HUMAN	homeobox A9	7							protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)	2						AGTAGTTGCCCAGGGCCCCAG	0.672			T	NUP98|MSI2	AML*								3	15					0	0	0.000602214	0	0
HIBADH	11112	broad.mit.edu	37	7	27689129	27689129	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:27689129G>C	uc003szf.2	-	2	410	c.215C>G	c.(214-216)CCT>CGT	p.P72R	HIBADH_uc003szg.2_Missense_Mutation_p.P23R|HIBADH_uc003szh.2_Intron|HIBADH_uc003szi.2_Missense_Mutation_p.P23R	NM_152740	NP_689953	P31937	3HIDH_HUMAN	3-hydroxyisobutyrate dehydrogenase precursor	72					branched chain family amino acid catabolic process|pentose-phosphate shunt|valine metabolic process	mitochondrial matrix	3-hydroxyisobutyrate dehydrogenase activity|NAD binding|phosphogluconate dehydrogenase (decarboxylating) activity			ovary(2)	2			GBM - Glioblastoma multiforme(3;0.0368)		NADH(DB00157)	GCAGGCATCAGGGAACACATC	0.358													6	456					0	0	3.59834e-05	0	0
TAX1BP1	8887	broad.mit.edu	37	7	27788209	27788210	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:27788209_27788210GG>TT	uc003szl.2	+	2	224_225	c.66_67GG>TT	c.(64-69)GTGGCC>GTTTCC	p.A23S	TAX1BP1_uc011jzo.1_Missense_Mutation_p.A23S|TAX1BP1_uc003szk.2_Missense_Mutation_p.A23S|TAX1BP1_uc011jzp.1_5'UTR	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	23					anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			TTCAAAATGTGGCCAAGAGTTA	0.376													13	465					0	0	6.4e-05	0	0
TAX1BP1	8887	broad.mit.edu	37	7	27827036	27827036	+	Splice_Site	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:27827036G>T	uc003szl.2	+	8	1011	c.853_splice	c.e8-1	p.V285_splice	TAX1BP1_uc011jzo.1_Splice_Site_p.V285_splice|TAX1BP1_uc003szk.2_Splice_Site_p.V285_splice|TAX1BP1_uc011jzp.1_Splice_Site_p.V128_splice	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)						anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			CACCATTACAGGTACATTTGA	0.313													14	237					3.52763e-06	4.40851e-05	0.000566183	1	0
TAX1BP1	8887	broad.mit.edu	37	7	27856024	27856025	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:27856024_27856025CC>AA	uc003szl.2	+	14	1979_1980	c.1821_1822CC>AA	c.(1819-1824)TCCCAG>TCAAAG	p.Q608K	TAX1BP1_uc011jzo.1_Intron|TAX1BP1_uc003szk.2_Intron|TAX1BP1_uc011jzp.1_Intron	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	608					anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			GTCAGAATTCCCAGAGTCCTCA	0.347													10	220					0	0	6.4e-05	0	0
TAX1BP1	8887	broad.mit.edu	37	7	27868278	27868278	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:27868278G>T	uc003szl.2	+	17	2358	c.2200G>T	c.(2200-2202)GAG>TAG	p.E734*	TAX1BP1_uc011jzo.1_Nonsense_Mutation_p.E692*|TAX1BP1_uc003szk.2_Nonsense_Mutation_p.E692*|TAX1BP1_uc011jzp.1_Nonsense_Mutation_p.E535*	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	734					anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			TCCCCTCTGTGAGTTAATGTT	0.388													16	316					1.16021e-09	1.54237e-08	0.000184323	1	0
LOC402644	402644	broad.mit.edu	37	7	28319155	28319155	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:28319155C>T	uc010kuz.1	-	1	164	c.164G>A	c.(163-165)AGA>AAA	p.R55K		NM_001126493	NP_001119965			hypothetical protein LOC402644												0						TGGTATAATTCTGTGAAAGCA	0.433													6	88					0	0	3.59834e-05	0	0
TRIL	9865	broad.mit.edu	37	7	28996418	28996418	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:28996418C>G	uc003szt.2	-	3	1612	c.1245G>C	c.(1243-1245)GCG>GCC	p.A415A	uc003szu.1_5'Flank	NM_014817	NP_055632	Q7L0X0	TRIL_HUMAN	TLR4 interactor with leucine rich repeats	415	Extracellular (Potential).|LRRCT.				inflammatory response|innate immune response|regulation of cytokine production involved in immune response|toll-like receptor 4 signaling pathway	lipopolysaccharide receptor complex	lipopolysaccharide binding				0						GCGAGGGATCCGCGCAGGATC	0.667													3	70					0	0	0.000602214	0	0
CRHR2	1395	broad.mit.edu	37	7	30706899	30706899	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:30706899C>T	uc003tbn.2	-	3	504	c.260G>A	c.(259-261)GGG>GAG	p.G87E	CRHR2_uc010kvw.1_Missense_Mutation_p.G87E|CRHR2_uc010kvx.1_Missense_Mutation_p.G87E|CRHR2_uc010kvy.1_Intron|CRHR2_uc003tbo.2_Missense_Mutation_p.G73E|CRHR2_uc003tbp.2_Missense_Mutation_p.G114E	NM_001883	NP_001874	Q13324	CRFR2_HUMAN	corticotropin releasing hormone receptor 2	87	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(2)|ovary(1)|skin(1)	4						GGCCCACGTCCCATTCTCCAA	0.542													10	75					0	0	0.000442599	0	0
INMT	11185	broad.mit.edu	37	7	30793423	30793423	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:30793423C>T	uc003tbs.1	+	2	247	c.231C>T	c.(229-231)TCC>TCT	p.S77S	FAM188B_uc010kwe.2_5'UTR|INMT_uc010kwc.1_RNA|INMT_uc010kwd.1_Silent_p.S76S	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	77						cytoplasm	amine N-methyltransferase activity				0						CCTGTGATTCCTTCCAAGACA	0.567													16	189					0	0	0.000132079	0	0
INMT	11185	broad.mit.edu	37	7	30793427	30793427	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:30793427C>A	uc003tbs.1	+	2	251	c.235C>A	c.(235-237)CAA>AAA	p.Q79K	FAM188B_uc010kwe.2_5'UTR|INMT_uc010kwc.1_RNA|INMT_uc010kwd.1_Missense_Mutation_p.Q78K	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	79						cytoplasm	amine N-methyltransferase activity				0						TGATTCCTTCCAAGACATCAC	0.572													9	191					0.000978159	0.00917326	0.000978159	1	0
KBTBD2	25948	broad.mit.edu	37	7	32914609	32914609	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:32914609G>C	uc003tdb.2	-	3	990	c.331C>G	c.(331-333)CTA>GTA	p.L111V	AVL9_uc011kai.1_Intron	NM_015483	NP_056298	Q8IY47	KBTB2_HUMAN	kelch repeat and BTB (POZ) domain containing 2	111											0			GBM - Glioblastoma multiforme(11;0.0499)			CTTACCTGTAGGAAGCAAGCT	0.234													4	112					0	0	3.59834e-05	0	0
FKBP9	11328	broad.mit.edu	37	7	33014293	33014293	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:33014293C>G	uc003tdh.2	+	2	467	c.286C>G	c.(286-288)CAG>GAG	p.Q96E	AVL9_uc011kai.1_Intron|FKBP9_uc011kak.1_Intron|FKBP9_uc011kal.1_Missense_Mutation_p.Q149E|FKBP9_uc003tdg.2_Missense_Mutation_p.Q96E|FKBP9_uc010kwm.2_Missense_Mutation_p.Q3E	NM_007270	NP_009201	O95302	FKBP9_HUMAN	FK506 binding protein 9 precursor	96	PPIase FKBP-type 1.				protein folding	endoplasmic reticulum|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			central_nervous_system(13)|ovary(1)	14			GBM - Glioblastoma multiforme(11;0.0156)			AGGGATGGACCAGGCTCTTGT	0.473													4	157					0	0	0.00024832	0	0
NPSR1	387129	broad.mit.edu	37	7	34889216	34889216	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:34889216G>A	uc003teg.1	+	9	1193	c.1065G>A	c.(1063-1065)GAG>GAA	p.E355E	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.E389K|NPSR1_uc010kwt.1_Silent_p.E202E|NPSR1_uc010kwu.1_Silent_p.E145E|NPSR1_uc010kwv.1_Silent_p.E289E|NPSR1_uc003tei.1_Intron|NPSR1_uc010kww.1_Intron|NPSR1_uc011kar.1_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	355	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	CGTTCCGGGAGAGAACTGAGA	0.488													14	132					0	0	0.000422831	0	0
ANLN	54443	broad.mit.edu	37	7	36446148	36446148	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:36446148G>T	uc003tff.2	+	4	1050	c.846G>T	c.(844-846)TTG>TTT	p.L282F	ANLN_uc011kaz.1_Missense_Mutation_p.L194F|ANLN_uc003tfg.2_Missense_Mutation_p.L282F|ANLN_uc010kxe.2_Missense_Mutation_p.L282F	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	282	Interaction with F-actin.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						ATGCGTCTTTGGTTAATGCCT	0.418													10	267					3.07112e-06	3.84493e-05	0.000978159	1	0
ANLN	54443	broad.mit.edu	37	7	36492118	36492118	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:36492118G>C	uc003tff.2	+	24	3488	c.3284G>C	c.(3283-3285)CGG>CCG	p.R1095P	ANLN_uc011kaz.1_Missense_Mutation_p.R1007P|ANLN_uc003tfg.2_Missense_Mutation_p.R1058P|ANLN_uc010kxe.2_Missense_Mutation_p.R1057P	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	1095	PH.|Localization to the cleavage furrow.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						AAAGAAGAGCGGGATCTCTGG	0.448													6	213					0	0	3.59834e-05	0	0
AOAH	313	broad.mit.edu	37	7	36661325	36661325	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:36661325G>C	uc003tfh.3	-	8	1045	c.644C>G	c.(643-645)CCA>CGA	p.P215R	AOAH_uc010kxf.2_Missense_Mutation_p.P215R|AOAH_uc011kba.1_Missense_Mutation_p.P183R	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	215					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						CCTTCTACCTGGGTACACTGA	0.507													4	179					0	0	0.000157383	0	0
POU6F2	11281	broad.mit.edu	37	7	39503824	39503824	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:39503824C>A	uc003thb.1	+	10	1657	c.1615C>A	c.(1615-1617)CAA>AAA	p.Q539K		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	539	POU-specific.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						ACAGGAAGCCCAAGAGAACAC	0.507													8	202					4.93089e-13	6.60573e-12	0.000219431	1	0
CDK13	8621	broad.mit.edu	37	7	40039008	40039008	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:40039008G>C	uc003thh.3	+	4	2373	c.2091G>C	c.(2089-2091)TGG>TGC	p.W697C	CDK13_uc003thi.3_Missense_Mutation_p.W697C|CDK13_uc011kbf.1_Missense_Mutation_p.W83C	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	697					alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						ATATTGACTGGGGAAAACGCT	0.348													4	120					0	0	8.12818e-05	0	0
CDK13	8621	broad.mit.edu	37	7	40134525	40134525	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:40134525G>C	uc003thh.3	+	14	4767	c.4485G>C	c.(4483-4485)AGG>AGC	p.R1495S	CDK13_uc003thi.3_Missense_Mutation_p.R1435S|CDK13_uc003thj.2_Missense_Mutation_p.R546S|CDK13_uc003thk.2_Missense_Mutation_p.R428S	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	1495					alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						AAGGATACAGGGGACATATTA	0.478													6	109					0	0	0.000442599	0	0
NPC1L1	29881	broad.mit.edu	37	7	44561402	44561402	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:44561402C>A	uc003tlb.2	-	12	2918	c.2862G>T	c.(2860-2862)GTG>GTT	p.V954V	NPC1L1_uc003tlc.2_Silent_p.V954V|NPC1L1_uc011kbw.1_Silent_p.V908V|NPC1L1_uc003tla.2_5'Flank	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	954	Cytoplasmic (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	TGAAGTCATCCACCCAGGAGG	0.602													6	63					0.000274275	0.00290969	0.000274275	1	0
OGDH	4967	broad.mit.edu	37	7	44739789	44739789	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:44739789G>T	uc003tln.2	+	19	2589	c.2480G>T	c.(2479-2481)TGG>TTG	p.W827L	OGDH_uc011kbx.1_Missense_Mutation_p.W823L|OGDH_uc011kby.1_Missense_Mutation_p.W677L|OGDH_uc003tlp.2_Missense_Mutation_p.W838L|OGDH_uc011kbz.1_Missense_Mutation_p.W622L	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	827					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	GACTGCAATTGGGTTGTTGTC	0.547													7	136					0.000274275	0.00290969	0.000274275	1	0
PKD1L1	168507	broad.mit.edu	37	7	47884604	47884604	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:47884604G>C	uc003tny.1	-	33	5226	c.5226C>G	c.(5224-5226)TCC>TCG	p.S1742S		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1742	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TCTGTAGCTTGGAAATGTCAC	0.453													4	74					0	0	0.000157383	0	0
PKD1L1	168507	broad.mit.edu	37	7	47924216	47924216	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:47924216G>C	uc003tny.1	-	19	3245	c.3245C>G	c.(3244-3246)CCA>CGA	p.P1082R		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1082	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TCCTCCCGATGGTATTGCTTC	0.438													4	60					0	0	0.000157383	0	0
LANCL2	55915	broad.mit.edu	37	7	55467671	55467671	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:55467671G>C	uc003tqp.2	+	4	1130	c.552G>C	c.(550-552)TCG>TCC	p.S184S		NM_018697	NP_061167	Q9NS86	LANC2_HUMAN	LanC lantibiotic synthetase component C-like 2	184					negative regulation of transcription, DNA-dependent|positive regulation of abscisic acid mediated signaling pathway	cortical actin cytoskeleton|cytosol|nucleus|plasma membrane	ATP binding|catalytic activity|GTP binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4-phosphate binding|phosphatidylinositol-5-phosphate binding			ovary(1)|skin(1)	2	Breast(14;0.0379)		Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00128)|Epithelial(13;0.0706)			TCCAGAGATCGGTTGTCTGCC	0.428													4	176					0	0	3.59834e-05	0	0
LANCL2	55915	broad.mit.edu	37	7	55492959	55492959	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:55492959G>C	uc003tqp.2	+	7	1599	c.1021G>C	c.(1021-1023)GAG>CAG	p.E341Q		NM_018697	NP_061167	Q9NS86	LANC2_HUMAN	LanC lantibiotic synthetase component C-like 2	341					negative regulation of transcription, DNA-dependent|positive regulation of abscisic acid mediated signaling pathway	cortical actin cytoskeleton|cytosol|nucleus|plasma membrane	ATP binding|catalytic activity|GTP binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4-phosphate binding|phosphatidylinositol-5-phosphate binding			ovary(1)|skin(1)	2	Breast(14;0.0379)		Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00128)|Epithelial(13;0.0706)			CTTTAAGGAGGAGAAGTACTT	0.463													4	120					0	0	0.000157383	0	0
ZNF735	730291	broad.mit.edu	37	7	63679732	63679732	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:63679732G>C	uc011kdn.1	+	4	303	c.303G>C	c.(301-303)CAG>CAC	p.Q101H		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	101					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGCCAGAGCAGAGCATAAAAG	0.323													4	179					0	0	0.000602214	0	0
ZNF107	51427	broad.mit.edu	37	7	64169007	64169007	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:64169007C>T	uc003ttd.2	+	7	3111	c.2325C>T	c.(2323-2325)CCC>CCT	p.P775P	ZNF107_uc003tte.2_Silent_p.P775P	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	775					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				GAGAGAAACCCTACAAATGTG	0.353													4	46					0	0	0.00024832	0	0
ZNF92	168374	broad.mit.edu	37	7	64863746	64863746	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:64863746G>C	uc003ttz.2	+	4	862	c.719G>C	c.(718-720)CGG>CCG	p.R240P	ZNF92_uc003tua.2_Missense_Mutation_p.R171P|ZNF92_uc010kzu.2_Missense_Mutation_p.R208P|ZNF92_uc003tub.2_Missense_Mutation_p.R164P	NM_152626	NP_689839	Q03936	ZNF92_HUMAN	zinc finger protein 92 isoform 2	240	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(55;0.159)				GCTTTTAACCGGTCCTCAAAT	0.373													4	110					0	0	3.59834e-05	0	0
TYW1	55253	broad.mit.edu	37	7	66463876	66463876	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:66463876C>A	uc003tvn.2	+	3	357	c.208C>A	c.(208-210)CAA>AAA	p.Q70K	TYW1_uc010lai.2_RNA	NM_018264	NP_060734	Q9NV66	TYW1_HUMAN	radical S-adenosyl methionine and flavodoxin	70					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity			skin(1)	1		Lung NSC(55;0.0846)|all_lung(88;0.183)				TGTCTCCCTTCAAGAGAAAGA	0.368													7	131					0.000274275	0.00290969	0.000274275	1	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657583	72657583	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:72657583C>T	uc003txs.1	-	13	2329	c.1401G>A	c.(1399-1401)ACG>ACA	p.T467T	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						tgtcgatcttcgtggagaacg	0													15	143					0	0	0.000375601	0	0
FKBP6	8468	broad.mit.edu	37	7	72745679	72745679	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:72745679C>T	uc003tya.2	+	5	620	c.488C>T	c.(487-489)CCA>CTA	p.P163L	FKBP6_uc003twz.2_Missense_Mutation_p.P133L|FKBP6_uc011kew.1_Missense_Mutation_p.P158L|FKBP6_uc010lbe.1_RNA	NM_003602	NP_003593	O75344	FKBP6_HUMAN	FK506 binding protein 6 isoform a	163					protein folding	membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				GACCAATTTCCACTTCAGAAG	0.428													25	108					0	0	0.00047179	0	0
BAZ1B	9031	broad.mit.edu	37	7	72883954	72883954	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:72883954G>T	uc003tyc.2	-	9	3104	c.2759C>A	c.(2758-2760)CCA>CAA	p.P920Q		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	920					ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				GAATAATCCTGGAACTTCATC	0.408													7	85					0.000673444	0.00655963	0.000673444	1	0
FGL2	10875	broad.mit.edu	37	7	76825974	76825974	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:76825974G>C	uc003ugb.2	-	2	982	c.942C>G	c.(940-942)GCC>GCG	p.A314A	CCDC146_uc003ufz.1_Intron|CCDC146_uc003uga.2_Intron	NM_006682	NP_006673	Q14314	FGL2_HUMAN	fibrinogen-like 2 precursor	314	Fibrinogen C-terminal.				signal transduction	fibrinogen complex	receptor binding			skin(2)	2						GATCATACAAGGCATATAGTT	0.363													4	135					0	0	0.00024832	0	0
CCDC146	57639	broad.mit.edu	37	7	76888342	76888342	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:76888342G>C	uc003uga.2	+	7	842	c.715G>C	c.(715-717)GTA>CTA	p.V239L	CCDC146_uc010ldp.2_5'Flank	NM_020879	NP_065930	Q8IYE0	CC146_HUMAN	coiled-coil domain containing 146	239	Potential.									ovary(1)|central_nervous_system(1)	2		all_cancers(73;0.128)|all_lung(88;0.0986)|all_epithelial(88;0.163)|Myeloproliferative disorder(862;0.205)				AACCATTCCAGTACAAATTGG	0.343													4	88					0	0	0.00024832	0	0
CCDC146	57639	broad.mit.edu	37	7	76916214	76916214	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:76916214G>A	uc003uga.2	+	16	2375	c.2248G>A	c.(2248-2250)GAA>AAA	p.E750K	CCDC146_uc010ldp.2_Missense_Mutation_p.E464K|CCDC146_uc003ugc.2_Missense_Mutation_p.E87K	NM_020879	NP_065930	Q8IYE0	CC146_HUMAN	coiled-coil domain containing 146	750	Potential.									ovary(1)|central_nervous_system(1)	2		all_cancers(73;0.128)|all_lung(88;0.0986)|all_epithelial(88;0.163)|Myeloproliferative disorder(862;0.205)				AGATCTGACCGAAAAAGAAAT	0.388													18	78					0	0	0.00074312	0	0
SEMA3C	10512	broad.mit.edu	37	7	80418770	80418770	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:80418770C>A	uc003uhj.2	-	12	1768	c.1206G>T	c.(1204-1206)CGG>CGT	p.R402R	SEMA3C_uc011kgw.1_Silent_p.R420R	NM_006379	NP_006370	Q99985	SEM3C_HUMAN	semaphorin 3C precursor	402	Sema.				immune response|response to drug	membrane	receptor activity			ovary(1)	1						GAGGATGGTTCCGAATAAAAG	0.413													5	40					0.000602214	0.00604416	0.000602214	1	0
HGF	3082	broad.mit.edu	37	7	81388021	81388021	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:81388021G>T	uc003uhl.2	-	3	519	c.354C>A	c.(352-354)CTC>CTA	p.L118L	HGF_uc003uhm.2_Silent_p.L118L|HGF_uc003uhn.1_Silent_p.L118L|HGF_uc003uho.1_Silent_p.L118L|HGF_uc003uhp.2_Silent_p.L118L	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	118	PAN.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TGTTTTCATAGAGGTCAAATT	0.353													8	141					0.000157383	0.00173811	0.000157383	1	0
PCLO	27445	broad.mit.edu	37	7	82545540	82545540	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:82545540G>T	uc003uhx.2	-	7	12051	c.11762C>A	c.(11761-11763)CCT>CAT	p.P3921H	PCLO_uc003uhv.2_Missense_Mutation_p.P3921H|PCLO_uc010lec.2_Missense_Mutation_p.P886H	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3852	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AGTCTGATAAGGTGAAACTTG	0.463													8	234					6.40141e-05	0.00075092	0.000978159	1	0
DBF4	10926	broad.mit.edu	37	7	87507434	87507434	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:87507434C>A	uc003ujf.1	+	2	617	c.113C>A	c.(112-114)CCA>CAA	p.P38Q	SLC25A40_uc003uje.2_5'Flank|DBF4_uc003ujh.1_5'UTR|DBF4_uc003ujg.1_5'UTR|DBF4_uc011khf.1_5'UTR	NM_006716	NP_006707	Q9UBU7	DBF4A_HUMAN	activator of S phase kinase	38					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle	nucleoplasm	enzyme activator activity|nucleic acid binding|protein binding|zinc ion binding			lung(2)	2	Esophageal squamous(14;0.00202)	Breast(660;0.0334)				GATAACAGGCCAGAAAAATCC	0.343													10	352					3.45872e-05	0.000417197	0.000422831	1	0
STEAP1	26872	broad.mit.edu	37	7	89793882	89793882	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:89793882G>C	uc003ujx.2	+	5	1054	c.854G>C	c.(853-855)TGG>TCG	p.W285S		NM_012449	NP_036581	Q9UHE8	STEA1_HUMAN	six transmembrane epithelial antigen of the	285					electron transport chain|ion transport|iron ion homeostasis	cell-cell junction|endosome membrane|integral to plasma membrane	channel activity|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	all_hematologic(106;0.112)					CAATTTGTATGGTATACACCT	0.373													4	152					0	0	3.59834e-05	0	0
AKAP9	10142	broad.mit.edu	37	7	91631932	91631932	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:91631932C>A	uc003ulg.2	+	8	2926	c.2701C>A	c.(2701-2703)CAT>AAT	p.H901N	AKAP9_uc003ule.2_Missense_Mutation_p.H913N|AKAP9_uc003ulf.2_Missense_Mutation_p.H901N|AKAP9_uc003uli.2_Missense_Mutation_p.H526N	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	913	Glu-rich.|Potential.			H -> N (in Ref. 3; BAA78718).	G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TGAAGAGCTTCATTTGCAAAG	0.313			T	BRAF	papillary thyroid								8	149					7.48243e-07	9.56199e-06	0.000442599	1	0
AKAP9	10142	broad.mit.edu	37	7	91660889	91660889	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:91660889C>A	uc003ulg.2	+	16	4534	c.4309C>A	c.(4309-4311)CAA>AAA	p.Q1437K	AKAP9_uc003ule.2_Missense_Mutation_p.Q1449K|AKAP9_uc003ulf.2_Missense_Mutation_p.Q1437K|AKAP9_uc003uli.2_Missense_Mutation_p.Q1062K	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1449	Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AAAACAATACCAAGAACAATT	0.303			T	BRAF	papillary thyroid								12	259					0.000219431	0.00241088	0.000219431	1	0
SAMD9	54809	broad.mit.edu	37	7	92731279	92731279	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:92731279C>G	uc003umf.2	-	3	4388	c.4132G>C	c.(4132-4134)GTC>CTC	p.V1378L	SAMD9_uc003umg.2_Missense_Mutation_p.V1378L	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1378						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TGGATTTTGACAGTGCATTGT	0.353													4	184					0	0	0.00024832	0	0
SAMD9	54809	broad.mit.edu	37	7	92731459	92731459	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:92731459C>G	uc003umf.2	-	3	4208	c.3952G>C	c.(3952-3954)GGT>CGT	p.G1318R	SAMD9_uc003umg.2_Missense_Mutation_p.G1318R	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1318						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			GATCCAAGACCTGTGTTGTTT	0.378													5	198					0	0	3.59834e-05	0	0
BET1	10282	broad.mit.edu	37	7	93625600	93625601	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:93625600_93625601GG>TT	uc003unf.1	-	3	339_340	c.177_178CC>AA	c.(175-180)ACCCAG>ACAAAG	p.Q60K	BET1_uc003une.3_RNA	NM_005868	NP_005859	O15155	BET1_HUMAN	blocked early in transport 1	60	Cytoplasmic (Potential).|t-SNARE coiled-coil homology.				ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	protein binding				0	all_cancers(62;2.22e-10)|all_epithelial(64;1.38e-09)|Lung NSC(181;0.218)	Breast(660;0.000162)|Ovarian(593;0.000626)	STAD - Stomach adenocarcinoma(171;0.000967)			AATTTATTCTGGGTTTTAACTT	0.252													15	276					0	0	6.4e-05	0	0
COL1A2	1278	broad.mit.edu	37	7	94056938	94056938	+	Splice_Site	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:94056938G>T	uc003ung.1	+	49	3739	c.3268_splice	c.e49-1	p.G1090_splice	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor						axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	CACCTTTGCAGGGCCCCCCTG	0.522										HNSCC(75;0.22)			7	120					0.000978159	0.00917326	0.000978159	1	0
DYNC1I1	1780	broad.mit.edu	37	7	95499213	95499213	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:95499213G>C	uc003uoc.3	+	6	721	c.444G>C	c.(442-444)CTG>CTC	p.L148L	DYNC1I1_uc003uod.3_Silent_p.L131L|DYNC1I1_uc003uob.2_Silent_p.L111L|DYNC1I1_uc003uoe.3_Silent_p.L128L|DYNC1I1_uc010lfl.2_Silent_p.L137L	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	148					vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			TGCATAAACTGGGCGTGTCAA	0.448													4	140					0	0	8.12818e-05	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95606865	95606865	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:95606865C>G	uc003uoc.3	+	7	860	c.583C>G	c.(583-585)CAG>GAG	p.Q195E	DYNC1I1_uc003uod.3_Missense_Mutation_p.Q178E|DYNC1I1_uc003uob.2_Missense_Mutation_p.Q158E|DYNC1I1_uc003uoe.3_Missense_Mutation_p.Q175E|DYNC1I1_uc010lfl.2_Missense_Mutation_p.Q184E	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	195					vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			TAAAGTTGGCCAGGACTCAGA	0.333													4	92					0	0	3.59834e-05	0	0
SLC25A13	10165	broad.mit.edu	37	7	95926238	95926238	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:95926238G>C	uc003uof.3	-	2	232	c.41C>G	c.(40-42)CCA>CGA	p.P14R	SLC25A13_uc003uog.3_Missense_Mutation_p.P14R|SLC25A13_uc011kik.1_5'UTR	NM_014251	NP_055066	Q9UJS0	CMC2_HUMAN	solute carrier family 25, member 13 isoform 2	14					ATP biosynthetic process|gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to plasma membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity			central_nervous_system(3)|skin(1)	4	all_cancers(62;7.75e-08)|all_epithelial(64;1.16e-07)		STAD - Stomach adenocarcinoma(171;0.194)		L-Aspartic Acid(DB00128)	AAGCTCAGCTGGATCTGCTCT	0.289													5	267					0	0	0.000157383	0	0
TMEM130	222865	broad.mit.edu	37	7	98453743	98453743	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:98453743G>C	uc003upo.2	-	4	804	c.615C>G	c.(613-615)ACC>ACG	p.T205T	TMEM130_uc011kiq.1_Silent_p.T186T|TMEM130_uc011kir.1_Silent_p.T205T|TMEM130_uc003upn.2_Silent_p.T103T	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	205	Extracellular (Potential).|PKD.					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TGAGCTTCACGGTGAAGGTCC	0.572													4	97					0	0	0.00024832	0	0
SMURF1	57154	broad.mit.edu	37	7	98654829	98654829	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:98654829C>A	uc003upu.1	-	5	722	c.402G>T	c.(400-402)GTG>GTT	p.V134V	SMURF1_uc003upv.1_Silent_p.V134V|SMURF1_uc003upt.2_Silent_p.V134V	NM_020429	NP_065162	Q9HCE7	SMUF1_HUMAN	Smad ubiquitination regulatory factor 1 isoform	134					BMP signaling pathway|cell differentiation|ectoderm development|negative regulation of BMP signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of protein ubiquitination|proteasomal ubiquitin-dependent protein catabolic process|protein export from nucleus|protein localization at cell surface|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|plasma membrane	activin binding|I-SMAD binding|R-SMAD binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|lung(1)	4	all_cancers(62;1.05e-08)|all_epithelial(64;4.34e-09)|Lung NSC(181;0.00902)|all_lung(186;0.0145)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)|Lung(104;0.224)			AGTTCTTACCCACTATCTGGC	0.438													9	248					0.000978159	0.00917326	0.000978159	1	0
PTCD1	26024	broad.mit.edu	37	7	99021462	99021462	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:99021462G>T	uc003uqh.2	-	7	1987	c.1856C>A	c.(1855-1857)CCG>CAG	p.P619Q	PTCD1_uc011kiw.1_Missense_Mutation_p.P668Q	NM_015545	NP_056360	O75127	PTCD1_HUMAN	pentatricopeptide repeat domain 1	619	PPR 9.									ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			TTCGTTCACCGGGACCCTGTT	0.542													5	122					8.12818e-05	0.000938396	8.12818e-05	1	0
ZNF498	221785	broad.mit.edu	37	7	99217277	99217277	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:99217277G>T	uc003url.1	+	4	375	c.48G>T	c.(46-48)TTG>TTT	p.L16F	ZNF498_uc003urm.1_5'UTR|ZNF498_uc010lge.1_5'UTR|ZNF498_uc003urn.2_RNA|ZNF498_uc010lgf.1_Missense_Mutation_p.L16F|ZNF498_uc003uro.1_5'Flank	NM_145115	NP_660090	Q6NSZ9	ZN498_HUMAN	zinc finger and SCAN domain containing 25	16					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_epithelial(64;1.95e-08)|Lung NSC(181;0.0066)|all_lung(186;0.011)|Esophageal squamous(72;0.0166)					AGCAGCAGTTGGGTATTCCTG	0.527													8	193					0.000157383	0.00173811	0.000157383	1	0
TRIM4	89122	broad.mit.edu	37	7	99506320	99506320	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:99506320G>C	uc003usd.2	-	4	813	c.683C>G	c.(682-684)ACG>AGG	p.T228R	TRIM4_uc003use.2_Missense_Mutation_p.T202R|TRIM4_uc011kjc.1_Missense_Mutation_p.T58R|TRIM4_uc003usf.2_Missense_Mutation_p.T202R	NM_033017	NP_148977	Q9C037	TRIM4_HUMAN	tripartite motif protein TRIM4 isoform alpha	228	Potential.				protein trimerization	cytoplasm|plasma membrane	zinc ion binding			ovary(1)|kidney(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)	Ovarian(593;0.238)				CTTCTTCTTCGTCTCTTCTTC	0.448													4	123					0	0	0.00024832	0	0
COPS6	10980	broad.mit.edu	37	7	99687270	99687270	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:99687270C>A	uc003usu.2	+	3	266	c.235C>A	c.(235-237)CGA>AGA	p.R79R	COPS6_uc011kjf.1_Silent_p.R79R	NM_006833	NP_006824	Q7L5N1	CSN6_HUMAN	COP9 signalosome subunit 6	79	MPN.				cullin deneddylation|interspecies interaction between organisms	cytoplasm|signalosome	protein binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			GCAGGAGGGCCGAAATATCGA	0.468													6	129					0.000157383	0.00173811	0.000157383	1	0
PCOLCE	5118	broad.mit.edu	37	7	100201744	100201744	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:100201744C>G	uc003uvo.2	+	3	565	c.367C>G	c.(367-369)CCC>GCC	p.P123A	uc011kjy.1_5'Flank|PCOLCE_uc011kkb.1_Missense_Mutation_p.P123A|PCOLCE_uc010lhb.1_Intron|PCOLCE_uc003uvp.1_5'Flank	NM_002593	NP_002584	Q15113	PCOC1_HUMAN	procollagen C-endopeptidase enhancer	123	CUB 1.				multicellular organismal development	extracellular space	collagen binding|heparin binding|peptidase activator activity				0	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					CCTAGTCGCCCCCGGCAACCA	0.677													4	79					0	0	3.59834e-05	0	0
Unknown	0	broad.mit.edu	37	7	100552491	100552491	+	RNA	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:100552491C>T	uc003uxk.1	+	1		c.1742C>T			uc003uxl.1_Silent_p.F314F					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		ACACAGTTTTCACAAGTACTC	0.522													12	234					0	0	0.000978159	0	0
MUC17	140453	broad.mit.edu	37	7	100677148	100677148	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:100677148G>C	uc003uxp.1	+	3	2504	c.2451G>C	c.(2449-2451)CCG>CCC	p.P817P	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	817	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|11.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCATCACACCGGTGACCAGTC	0.488													5	333					0	0	0.000602214	0	0
MUC17	140453	broad.mit.edu	37	7	100681921	100681921	+	Silent	SNP	G	C	C	rs142511454		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:100681921G>C	uc003uxp.1	+	3	7277	c.7224G>C	c.(7222-7224)CCG>CCC	p.P2408P	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2408	Extracellular (Potential).|59 X approximate tandem repeats.|38.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCACCATGCCGGTGGTCAGTT	0.512													6	311					0	0	0.000157383	0	0
MUC17	140453	broad.mit.edu	37	7	100682276	100682276	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:100682276G>T	uc003uxp.1	+	3	7632	c.7579G>T	c.(7579-7581)GTG>TTG	p.V2527L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2527	Extracellular (Potential).|40.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CACCACGCCAGTGGCCAGTCC	0.478													7	310					2.17888e-05	0.000264662	0.000442599	1	0
MUC17	140453	broad.mit.edu	37	7	100683337	100683337	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:100683337G>C	uc003uxp.1	+	3	8693	c.8640G>C	c.(8638-8640)CCG>CCC	p.P2880P	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2880	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|46.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCACCACGCCGGTGGCCAGTT	0.488													5	257					0	0	8.12818e-05	0	0
ARMC10	83787	broad.mit.edu	37	7	102727133	102727133	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:102727133C>A	uc003vaw.1	+	4	842	c.450C>A	c.(448-450)TCC>TCA	p.S150S	ARMC10_uc003vay.1_Silent_p.S150S|ARMC10_uc003vax.1_Silent_p.S115S|ARMC10_uc003vbb.1_Silent_p.S115S|ARMC10_uc011kli.1_Silent_p.S115S|ARMC10_uc010lis.1_Silent_p.S115S|ARMC10_uc003vba.1_RNA|ARMC10_uc003vaz.1_Silent_p.S28S	NM_031905	NP_114111	Q8N2F6	ARM10_HUMAN	SVH protein isoform a	150	ARM.				regulation of growth	endoplasmic reticulum membrane|integral to membrane	binding			ovary(1)	1						TCAACCATTCCAACCAGAGTA	0.343													8	201					0.000442599	0.00445669	0.000442599	1	0
RELN	5649	broad.mit.edu	37	7	103234862	103234862	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:103234862C>G	uc003vca.2	-	26	3777	c.3617G>C	c.(3616-3618)GGG>GCG	p.G1206A	RELN_uc010liz.2_Missense_Mutation_p.G1206A	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1206					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ATAGTCCTCCCCTGAGAACAC	0.488													5	134					0	0	0.000602214	0	0
PIK3CG	5294	broad.mit.edu	37	7	106513003	106513003	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:106513003C>G	uc003vdv.3	+	3	2102	c.2017C>G	c.(2017-2019)CAT>GAT	p.H673D	PIK3CG_uc003vdu.2_Missense_Mutation_p.H673D|PIK3CG_uc003vdw.2_Missense_Mutation_p.H673D	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	673					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						TGAACCATACCATGATAGCGC	0.393													6	164					0	0	0.000978159	0	0
HBP1	26959	broad.mit.edu	37	7	106826848	106826848	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:106826848C>G	uc003vdy.2	+	5	769	c.583C>G	c.(583-585)CTG>GTG	p.L195V	HBP1_uc011klv.1_Missense_Mutation_p.L205V|HBP1_uc003vdz.2_Missense_Mutation_p.L195V|HBP1_uc003vea.2_Missense_Mutation_p.L195V|HBP1_uc003veb.1_Missense_Mutation_p.L195V	NM_012257	NP_036389	O60381	HBP1_HUMAN	HMG-box transcription factor 1	195					cell cycle arrest|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	DNA binding			skin(1)	1						CATGTCCTCCCTGTCAGATGA	0.333													4	177					0	0	0.000157383	0	0
LAMB4	22798	broad.mit.edu	37	7	107710211	107710211	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:107710211C>G	uc010ljo.1	-	18	2328	c.2244G>C	c.(2242-2244)CCG>CCC	p.P748P	LAMB4_uc003vey.2_Silent_p.P748P	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	748	Laminin IV type B.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CACAGGCACCCGGGAGCACTT	0.488													4	125					0	0	0.000602214	0	0
ZNF277	11179	broad.mit.edu	37	7	111976201	111976201	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:111976201C>A	uc003vge.2	+	8	973	c.844C>A	c.(844-846)CGG>AGG	p.R282R	ZNF277_uc003vgf.2_Silent_p.R204R|ZNF277_uc003vgg.2_Silent_p.R107R	NM_021994	NP_068834	Q9NRM2	ZN277_HUMAN	zinc finger protein (C2H2 type) 277	282						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|breast(2)	4						GGAAGATGATCGGGAGTTGCT	0.413													4	54					8.12818e-05	0.000938396	8.12818e-05	1	0
MET	4233	broad.mit.edu	37	7	116399539	116399539	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:116399539A>G	uc003vij.2	+	10	2546	c.2359A>G	c.(2359-2361)ACA>GCA	p.T787A	MET_uc010lkh.2_Missense_Mutation_p.T805A|MET_uc011kng.1_Missense_Mutation_p.T787A|MET_uc011knh.1_Intron|MET_uc011kni.1_Missense_Mutation_p.T787A|MET_uc011knj.1_Missense_Mutation_p.T357A	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	787	Extracellular (Potential).|IPT/TIG 3.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			AAGGAACTTTACAGTGGTAAG	0.458			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				4	30					0	0	0.00024832	0	0
ASZ1	136991	broad.mit.edu	37	7	117066890	117066890	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:117066890C>A	uc003vjb.2	-	2	268	c.205G>T	c.(205-207)GGC>TGC	p.G69C	ASZ1_uc011kno.1_Missense_Mutation_p.G69C|ASZ1_uc011knp.1_5'UTR	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper	69	ANK 1.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			TATCTCTCACCAGAATCTAGG	0.363													10	302					3.45872e-05	0.000417197	0.000422831	1	0
PTPRZ1	5803	broad.mit.edu	37	7	121653392	121653392	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:121653392A>G	uc003vjy.2	+	12	4687	c.4292A>G	c.(4291-4293)GAC>GGC	p.D1431G	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1431	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						gatgatgatgaCAGAGGTAGT	0.323													3	68					0	0	6.4e-05	0	0
GRM8	2918	broad.mit.edu	37	7	126882950	126882950	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:126882950G>A	uc003vlr.2	-	1	620	c.309C>T	c.(307-309)CTC>CTT	p.L103L	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.L103L|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	103	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	AGCACGTGTCGAGGATGCGGA	0.478										HNSCC(24;0.065)			6	44					0	0	3.59834e-05	0	0
SND1	27044	broad.mit.edu	37	7	127484453	127484453	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:127484453G>T	uc003vmi.2	+	12	1545	c.1319G>T	c.(1318-1320)TGT>TTT	p.C440F	SND1_uc010lle.2_Missense_Mutation_p.C93F	NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	staphylococcal nuclease domain containing 1	440	TNase-like 3.				gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	melanosome|nucleus|RNA-induced silencing complex	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						GAGCGTACCTGTGCCACTGTC	0.488													4	45					3.59834e-05	0.000429	3.59834e-05	1	0
KLHDC10	23008	broad.mit.edu	37	7	129764316	129764316	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:129764316G>C	uc003vpj.1	+	6	940	c.805G>C	c.(805-807)GGG>CGG	p.G269R	KLHDC10_uc003vpk.1_Missense_Mutation_p.G240R|KLHDC10_uc010lmb.1_Missense_Mutation_p.G166R	NM_014997	NP_055812	Q6PID8	KLD10_HUMAN	kelch domain containing 10	269	Kelch 3.										0						TGCACATGACGGGCAGAGGAT	0.299													4	212					0	0	0.000602214	0	0
TSGA14	95681	broad.mit.edu	37	7	130038827	130038827	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:130038827G>T	uc003vpz.2	-	11	1074	c.1027C>A	c.(1027-1029)CGA>AGA	p.R343R	TSGA14_uc003vpy.2_Silent_p.R105R|TSGA14_uc010lmf.2_Silent_p.R140R|TSGA14_uc003vqa.2_Silent_p.R271R|TSGA14_uc011kpg.1_Silent_p.R255R	NM_018718	NP_061188	Q9BYV8	CEP41_HUMAN	testis specific, 14	343					G2/M transition of mitotic cell cycle	centrosome|cytosol					0	Melanoma(18;0.0435)					TGAGCGCTTCGGGCACCAGGC	0.582													8	365					1.58986e-06	2.00859e-05	0.000673444	1	0
TSGA14	95681	broad.mit.edu	37	7	130041777	130041777	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:130041777G>T	uc003vpz.2	-	8	634	c.587C>A	c.(586-588)CCA>CAA	p.P196Q	TSGA14_uc003vpy.2_5'Flank|TSGA14_uc010lmf.2_5'UTR|TSGA14_uc003vqa.2_Missense_Mutation_p.P196Q|TSGA14_uc011kpg.1_Missense_Mutation_p.P180Q	NM_018718	NP_061188	Q9BYV8	CEP41_HUMAN	testis specific, 14	196	Rhodanese.				G2/M transition of mitotic cell cycle	centrosome|cytosol					0	Melanoma(18;0.0435)					AGTTGCAATTGGGTAACTGTA	0.353													13	490					0.00074312	0.00723323	0.00074312	1	0
MEST	4232	broad.mit.edu	37	7	130138290	130138290	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:130138290C>A	uc003vqg.2	+	6	724	c.507C>A	c.(505-507)ACC>ACA	p.T169T	MEST_uc003vqc.2_Silent_p.T160T|MEST_uc003vqd.2_Silent_p.T160T|MEST_uc003vqf.2_Silent_p.T160T|MEST_uc011kph.1_Silent_p.T155T|MEST_uc010lmg.2_Silent_p.T169T	NM_002402	NP_002393	Q5EB52	MEST_HUMAN	mesoderm specific transcript isoform a	169					mesoderm development	endoplasmic reticulum membrane|integral to membrane	hydrolase activity|protein binding			ovary(2)	2	Melanoma(18;0.0435)					GTCGGCTTACCATAAAGAGTC	0.473													14	355					1.15919e-05	0.000141985	0.000132079	1	0
COPG2	26958	broad.mit.edu	37	7	130297058	130297059	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:130297058_130297059GG>TT	uc003vqh.1	-	8	633_634	c.543_544CC>AA	c.(541-546)GCCCAA>GCAAAA	p.Q182K		NM_012133	NP_036265	Q9UBF2	COPG2_HUMAN	coatomer protein complex, subunit gamma 2	182					intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat	protein binding|structural molecule activity				0	Melanoma(18;0.0435)					GCAGCTTCTTGGGCTTCATTGA	0.361													16	466					0	0	6.4e-05	0	0
COPG2	26958	broad.mit.edu	37	7	130301862	130301862	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:130301862T>G	uc003vqh.1	-	6	488	c.398A>C	c.(397-399)GAT>GCT	p.D133A		NM_012133	NP_036265	Q9UBF2	COPG2_HUMAN	coatomer protein complex, subunit gamma 2	133					intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat	protein binding|structural molecule activity				0	Melanoma(18;0.0435)					ATAACTTACATCGGTGATCCT	0.403													36	226					0	0	0.000814825	0	0
MKLN1	4289	broad.mit.edu	37	7	131072019	131072019	+	Silent	SNP	C	G	G	rs142447184		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:131072019C>G	uc011kpm.1	+	3	373	c.309C>G	c.(307-309)TCC>TCG	p.S103S	MKLN1_uc011kpl.1_Silent_p.S80S|MKLN1_uc010lmh.2_Silent_p.S103S|MKLN1_uc003vqs.2_5'UTR	NM_013255	NP_037387	Q9UL63	MKLN1_HUMAN	muskelin 1, intracellular mediator containing	103					signal transduction	cytoplasm	protein binding			breast(1)	1	Melanoma(18;0.162)					AGCTGTTGTCCAGGTGAGTTA	0.328													4	97					0	0	0.000157383	0	0
CNOT4	4850	broad.mit.edu	37	7	135099147	135099147	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:135099147C>G	uc003vsv.1	-	5	801	c.494G>C	c.(493-495)CGG>CCG	p.R165P	CNOT4_uc003vss.2_Missense_Mutation_p.R165P|CNOT4_uc011kpz.1_Missense_Mutation_p.R165P|CNOT4_uc003vst.2_Missense_Mutation_p.R165P|CNOT4_uc003vsu.1_Missense_Mutation_p.R165P|CNOT4_uc011kpy.1_Missense_Mutation_p.R165P	NM_001008225	NP_001008226	O95628	CNOT4_HUMAN	CCR4-NOT transcription complex, subunit 4	165	RRM.				nuclear-transcribed mRNA poly(A) tail shortening|protein autoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	nucleotide binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding				0						GTCTTCTGACCGGATATAGGT	0.353													5	135					0	0	0.000602214	0	0
NUP205	23165	broad.mit.edu	37	7	135304619	135304619	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:135304619C>G	uc003vsw.2	+	30	4344	c.4313C>G	c.(4312-4314)CCA>CGA	p.P1438R	NUP205_uc003vsx.2_RNA	NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	1438					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						CCTGATGAACCAGACACCTTA	0.398													4	164					0	0	0.00024832	0	0
DGKI	9162	broad.mit.edu	37	7	137080383	137080383	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:137080383C>T	uc003vtt.2	-	33	3043	c.3042G>A	c.(3040-3042)CTG>CTA	p.L1014L	DGKI_uc003vtu.2_Silent_p.L683L	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	1014	ANK 2.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						CTGCATCCACCAGAAGCTGGC	0.562													4	63					0	0	0.000157383	0	0
DGKI	9162	broad.mit.edu	37	7	137082151	137082151	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:137082151C>G	uc003vtt.2	-	32	2954	c.2953G>C	c.(2953-2955)GAG>CAG	p.E985Q	DGKI_uc003vtu.2_Missense_Mutation_p.E654Q	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	985	ANK 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						TCCAATAACTCGGAAGGTCCT	0.338													4	164					0	0	0.00024832	0	0
KIAA1549	57670	broad.mit.edu	37	7	138591834	138591834	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:138591834G>A	uc011kql.1	-	6	3340	c.3291C>T	c.(3289-3291)ACC>ACT	p.T1097T	KIAA1549_uc003vuk.3_Silent_p.T1047T|KIAA1549_uc011kqj.1_Silent_p.T1097T	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1097						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						AGGAACTGATGGTGATATTCA	0.438			O	BRAF	pilocytic astrocytoma								4	57					0	0	3.59834e-05	0	0
DENND2A	27147	broad.mit.edu	37	7	140223203	140223203	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:140223203G>A	uc010lnj.2	-	15	2714	c.2569C>T	c.(2569-2571)CTG>TTG	p.L857L	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Silent_p.L857L|DENND2A_uc003vvw.2_Silent_p.L857L	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	857										ovary(3)|breast(1)	4	Melanoma(164;0.00956)					TTCCGGGGCAGGATGGAGTCC	0.602													12	55					0	0	0.00010058	0	0
DENND2A	27147	broad.mit.edu	37	7	140227128	140227128	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:140227128G>T	uc010lnj.2	-	13	2640	c.2495C>A	c.(2494-2496)CCG>CAG	p.P832Q	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Missense_Mutation_p.P832Q|DENND2A_uc003vvw.2_Missense_Mutation_p.P832Q	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	832	DENN.									ovary(3)|breast(1)	4	Melanoma(164;0.00956)					CTCTTCCAGCGGCAGCTCCCT	0.677													4	5					0.00024832	0.00272719	0.00024832	1	0
NDUFB2	4708	broad.mit.edu	37	7	140402763	140402763	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:140402763T>C	uc003vwa.2	+	2	260	c.196T>C	c.(196-198)TGG>CGG	p.W66R	NDUFB2_uc010lnl.2_RNA	NM_004546	NP_004537	O95178	NDUB2_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	66					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			ovary(1)|central_nervous_system(1)	2	Melanoma(164;0.00956)				NADH(DB00157)	CGGACTCATGTGGTTCTGGAT	0.557													6	223					0	0	3.59834e-05	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				9	66					0	0	0.000673444	0	0
BRAF	673	broad.mit.edu	37	7	140549961	140549962	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:140549961_140549962GG>TT	uc003vwc.3	-	2	250_251	c.189_190CC>AA	c.(187-192)GCCCTA>GCAATA	p.L64I		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	64					activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding		KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TTGTCCAATAGGGCCTCTATAT	0.287		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				9	283					0	0	6.4e-05	0	0
TAS2R5	54429	broad.mit.edu	37	7	141490984	141490984	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:141490984G>C	uc003vwr.1	+	1	968	c.823G>C	c.(823-825)GGG>CGG	p.G275R		NM_018980	NP_061853	Q9NYW4	TA2R5_HUMAN	taste receptor T2R5	275	Cytoplasmic (Potential).				chemosensory behavior|sensory perception of taste		taste receptor activity				0	Melanoma(164;0.0171)					ATTGATCATGGGGATTCCTAG	0.498													4	152					0	0	3.59834e-05	0	0
MGAM	8972	broad.mit.edu	37	7	141759688	141759688	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:141759688T>C	uc003vwy.2	+	33	4035	c.3981T>C	c.(3979-3981)CCT>CCC	p.P1327P		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1327	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AGACACAGCCTTATCCTGCCT	0.463													3	28					0	0	6.4e-05	0	0
MGAM	8972	broad.mit.edu	37	7	141797449	141797449	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:141797449G>C	uc003vwy.2	+	43	5115	c.5061G>C	c.(5059-5061)ACG>ACC	p.T1687T		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1687	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ATTACTACACGGTAAGTTTTT	0.244													5	66					0	0	0.000157383	0	0
Unknown	0	broad.mit.edu	37	7	142499645	142499645	+	RNA	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:142499645G>C	uc003wbe.3	+	3		c.458G>C			uc003wbf.3_RNA|uc003wbh.3_Missense_Mutation_p.E182Q|uc003wbi.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T cell receptor V beta14-D-J, partial cds.																		CTTCACCTCCGGTAAGTGAGT	0.507													6	381					0	0	8.12818e-05	0	0
TRPV6	55503	broad.mit.edu	37	7	142573347	142573347	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:142573347C>G	uc003wbx.1	-	8	1212	c.996G>C	c.(994-996)CTG>CTC	p.L332L	TRPV6_uc003wbw.1_Silent_p.L118L|TRPV6_uc010lou.1_Silent_p.L203L	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	332	Helical; (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					ATATGGCACCCAGCATGCAGA	0.592													4	160					0	0	0.00024832	0	0
CLCN1	1180	broad.mit.edu	37	7	143016897	143016897	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:143016897G>C	uc003wcr.1	+	2	317	c.230G>C	c.(229-231)GGG>GCG	p.G77A	CLCN1_uc011ktc.1_5'UTR|CLCN1_uc003wcs.1_5'Flank|CLCN1_uc010lox.1_5'Flank|CLCN1_uc010loy.1_5'Flank	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	77	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CAGGACATAGGGATGCCCAAG	0.443													4	159					0	0	0.00024832	0	0
FAM115A	9747	broad.mit.edu	37	7	143573425	143573425	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:143573425C>A	uc003wdo.1	-	2	410	c.277G>T	c.(277-279)GGT>TGT	p.G93C	FAM115A_uc011ktu.1_Intron|FAM115A_uc003wdp.1_Missense_Mutation_p.G93C	NM_014719	NP_055534	Q9Y4C2	F115A_HUMAN	hypothetical protein LOC9747	93											0	Melanoma(164;0.0903)					GGGTGTACACCAATGGGAGCC	0.582													6	66					8.12818e-05	0.000938396	8.12818e-05	1	0
ARHGEF5	7984	broad.mit.edu	37	7	144060770	144060770	+	Silent	SNP	T	C	C	rs141931104	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:144060770T>C	uc003wel.2	+	2	1126	c.1008T>C	c.(1006-1008)AAT>AAC	p.N336N	ARHGEF5_uc003wek.2_Silent_p.N336N	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	336					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					CAGAAGAGAATAGGGCGGACT	0.512													7	212					0	0	0.000219431	0	0
TPK1	27010	broad.mit.edu	37	7	144320354	144320355	+	Splice_Site	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:144320354_144320355CC>AA	uc003weq.2	-	6	362	c.259_splice	c.e6-1	p.G87_splice	TPK1_uc003weo.2_Splice_Site_p.G82_splice|TPK1_uc003wep.2_Splice_Site|TPK1_uc003wer.2_Splice_Site_p.G87_splice|TPK1_uc003wes.2_Splice_Site	NM_022445	NP_071890	Q9H3S4	TPK1_HUMAN	thiamin pyrophosphokinase 1 isoform a						thiamine diphosphate biosynthetic process	cytosol	ATP binding|kinase activity|thiamine diphosphokinase activity			ovary(2)	2					Thiamine(DB00152)	AGCTCACATCCCTATGTATTAA	0.312													9	268					0	0	6.4e-05	0	0
EZH2	2146	broad.mit.edu	37	7	148506233	148506233	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:148506233C>T	uc003wfd.1	-	19	2276	c.2110G>A	c.(2110-2112)GGT>AGT	p.G704S	EZH2_uc011kug.1_Missense_Mutation_p.G653S|EZH2_uc003wfb.1_Missense_Mutation_p.G709S|EZH2_uc003wfc.1_Missense_Mutation_p.G665S|EZH2_uc011kuh.1_Missense_Mutation_p.G695S	NM_004456	NP_004447	Q15910	EZH2_HUMAN	enhancer of zeste 2 isoform a	704	SET.				negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	DNA binding|histone-lysine N-methyltransferase activity|protein binding			haematopoietic_and_lymphoid_tissue(180)|skin(2)|large_intestine(1)	183	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00239)			CTGTGATCACCGTTAACCATC	0.448			Mis		DLBCL								5	147					0	0	0.000602214	0	0
PDIA4	9601	broad.mit.edu	37	7	148701264	148701264	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:148701264G>T	uc003wff.2	-	10	1842	c.1560C>A	c.(1558-1560)CCC>CCA	p.P520P		NM_004911	NP_004902	P13667	PDIA4_HUMAN	protein disulfide isomerase A4 precursor	520	Thioredoxin 3.				cell redox homeostasis|glycerol ether metabolic process|protein secretion	endoplasmic reticulum lumen|melanosome	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			lung(5)|ovary(1)	6	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00385)			TGTTGTTCTTGGGCACTGGCT	0.557													9	223					0.000219431	0.00241088	0.000219431	1	0
ZNF786	136051	broad.mit.edu	37	7	148767930	148767930	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:148767930C>G	uc003wfh.2	-	4	2071	c.1934G>C	c.(1933-1935)GGG>GCG	p.G645A	ZNF786_uc011kuk.1_Missense_Mutation_p.G608A|ZNF786_uc003wfi.2_Missense_Mutation_p.G559A	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	645					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			AGGCATCTCCCCGCTGTGCAG	0.592													4	89					0	0	3.59834e-05	0	0
ACTR3C	653857	broad.mit.edu	37	7	149983622	149983622	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:149983622T>C	uc003wgu.1	-	5	495	c.305A>G	c.(304-306)TAC>TGC	p.Y102C		NM_001040135	NP_001035225	Q9C0K3	ARP3C_HUMAN	actin-related protein 3-beta isoform 2	102					regulation of actin filament polymerization	cytoskeleton	actin binding|ATP binding				0						AATGTAACAGTATTTCTCCTG	0.458													3	69					0	0	6.4e-05	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325545	150325545	+	Silent	SNP	C	T	T	rs138777121		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:150325545C>T	uc003whn.2	-	3	565	c.141G>A	c.(139-141)GGG>GGA	p.G47G	GIMAP6_uc003whm.2_Intron	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	47	GTP (Potential).						GTP binding	p.G47G(1)		upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCCCTGTTTTCCCCATGAGAA	0.527													24	284					0	0	0.000878237	0	0
AGAP3	116988	broad.mit.edu	37	7	150814734	150814734	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:150814734G>C	uc003wjg.1	+	5	579	c.576G>C	c.(574-576)TGG>TGC	p.W192C	AGAP3_uc003wje.1_5'UTR|AGAP3_uc003wjf.1_Missense_Mutation_p.W192C|AGAP3_uc010lpy.1_Missense_Mutation_p.W192C|AGAP3_uc003wjh.1_Missense_Mutation_p.W372C	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	156	Small GTPase-like.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						TTGCTGCCTGGGTGGATGCAG	0.537													4	180					0	0	3.59834e-05	0	0
AGAP3	116988	broad.mit.edu	37	7	150839259	150839259	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:150839259G>C	uc003wjg.1	+	15	1972	c.1969G>C	c.(1969-1971)GGG>CGG	p.G657R	AGAP3_uc003wje.1_Missense_Mutation_p.G326R|AGAP3_uc003wjj.1_Missense_Mutation_p.G156R|AGAP3_uc003wjk.1_Missense_Mutation_p.G75R	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	621					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						GACTCGACTGGGGAACCAGAA	0.627													6	203					0	0	0.000157383	0	0
MLL3	58508	broad.mit.edu	37	7	151880143	151880144	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:151880143_151880144GG>CT	uc003wla.2	-	35	5399_5400	c.5180_5181CC>AG	c.(5179-5181)CCC>CAG	p.P1727Q	MLL3_uc003wkz.2_Missense_Mutation_p.P788Q	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1727	Gln-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TACGAGAGCTGGGATCAATGCT	0.371			N		medulloblastoma								7	345					0	0	6.4e-05	0	0
MLL3	58508	broad.mit.edu	37	7	151962185	151962185	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:151962185C>G	uc003wla.2	-	8	1341	c.1122G>C	c.(1120-1122)GCG>GCC	p.A374A		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	374	PHD-type 1.|RING-type.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ATGGAGTAACCGCTATATCCA	0.448			N		medulloblastoma								6	466					0	0	0.000274275	0	0
MLL3	58508	broad.mit.edu	37	7	152007131	152007131	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:152007131C>G	uc003wla.2	-	6	988	c.769G>C	c.(769-771)GAG>CAG	p.E257Q		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	257					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AGTGACCACTCCACACAACGG	0.388			N		medulloblastoma								3	68					0	0	0.000602214	0	0
DPP6	1804	broad.mit.edu	37	7	154143394	154143394	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:154143394G>C	uc003wlk.2	+	2	468	c.339G>C	c.(337-339)TCG>TCC	p.S113S	DPP6_uc003wli.2_Silent_p.S49S|DPP6_uc003wlj.2_Silent_p.S113S|DPP6_uc010lqh.1_Silent_p.S51S|DPP6_uc003wlm.2_Silent_p.S51S|DPP6_uc011kvq.1_Silent_p.S51S	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	113	Helical; Signal-anchor for type II membrane protein; (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			TCGTCACCTCGGTCATACTTC	0.433													4	98					0	0	0.00024832	0	0
SHH	6469	broad.mit.edu	37	7	155604639	155604640	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:155604639_155604640CG>AT	uc003wmk.1	-	1	328_329	c.177_178CG>AT	c.(175-180)AGCGGA>AGATGA	p.59_60SG>R*	SHH_uc003wmh.1_5'Flank|SHH_uc003wmi.1_5'Flank|SHH_uc003wmj.1_5'Flank	NM_000193	NP_000184	Q15465	SHH_HUMAN	sonic hedgehog preproprotein	59_60					androgen metabolic process|axon guidance|branching involved in ureteric bud morphogenesis|CD4-positive or CD8-positive, alpha-beta T cell lineage commitment|embryonic digit morphogenesis|hindbrain development|intein-mediated protein splicing|lymphoid progenitor cell differentiation|metanephric mesenchymal cell proliferation involved in metanephros development|midbrain development|negative regulation of cell migration|negative regulation of kidney smooth muscle cell differentiation|negative regulation of ureter smooth muscle cell differentiation|negative thymic T cell selection|neural crest cell migration|neuroblast proliferation|patterning of blood vessels|positive regulation of alpha-beta T cell differentiation|positive regulation of immature T cell proliferation in thymus|positive regulation of kidney smooth muscle cell differentiation|positive regulation of mesenchymal cell proliferation involved in ureter development|positive regulation of T cell differentiation in thymus|positive regulation of ureter smooth muscle cell differentiation|positive thymic T cell selection|proteolysis|sclerotome development|stem cell development|thymus development|vasculogenesis|ventral midline development	cell surface|extracellular space|membrane raft|plasma membrane	calcium ion binding|laminin-1 binding|peptidase activity|signal transducer activity|zinc ion binding			central_nervous_system(3)|lung(1)	4	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00882)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCATACCTTCCGCTGGCGCCTA	0.53													6	231					0	0	6.4e-05	0	0
NOM1	64434	broad.mit.edu	37	7	156759009	156759009	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:156759009C>A	uc003wmy.2	+	8	2094	c.2079C>A	c.(2077-2079)CTC>CTA	p.L693L		NM_138400	NP_612409	Q5C9Z4	NOM1_HUMAN	nucleolar protein with MIF4G domain 1	693	MI.				RNA metabolic process	nucleolus	protein binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00301)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		TTCACGTTCTCATGGATTGCT	0.418													8	163					0.000673444	0.00655963	0.000673444	1	0
MNX1	3110	broad.mit.edu	37	7	156799208	156799208	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:156799208C>A	uc003wnd.1	-	2	1120	c.817G>T	c.(817-819)GAG>TAG	p.E273*	MNX1_uc003wmz.2_Intron|MNX1_uc003wna.2_Intron|MNX1_uc010lqq.1_Nonsense_Mutation_p.E66*|MNX1_uc003wnc.1_Nonsense_Mutation_p.E61*|MNX1_uc010lqr.1_Intron	NM_005515	NP_005506	P50219	MNX1_HUMAN	motor neuron and pancreas homeobox 1 isoform 1	273	Homeobox.				humoral immune response|regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00301)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTGGCCACCTCGAAGCGCTTG	0.677									Currarino_syndrome				4	40					8.12818e-05	0.000938396	8.12818e-05	1	0
NCAPG2	54892	broad.mit.edu	37	7	158424377	158424378	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:158424377_158424378CC>AA	uc003wnv.1	-	28	3557_3558	c.3412_3413GG>TT	c.(3412-3414)GGA>TTA	p.G1138L	NCAPG2_uc010lqu.1_Missense_Mutation_p.G883L|NCAPG2_uc003wnw.1_RNA|NCAPG2_uc003wnx.1_Missense_Mutation_p.G1138L|NCAPG2_uc011kwc.1_Missense_Mutation_p.G592L	NM_017760	NP_060230	Q86XI2	CNDG2_HUMAN	leucine zipper protein 5	1138					cell division|chromosome condensation|mitosis	nucleus	methylated histone residue binding			ovary(1)|breast(1)|kidney(1)	3	Ovarian(565;0.152)	all_cancers(7;3.44e-11)|all_epithelial(9;3.05e-05)|all_hematologic(28;0.014)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.187)|STAD - Stomach adenocarcinoma(7;0.18)		CAAAAGTTCTCCCAGAGTTCTT	0.302													9	315					0	0	6.4e-05	0	0
NCAPG2	54892	broad.mit.edu	37	7	158447921	158447921	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:158447921G>T	uc003wnv.1	-	21	2680	c.2535C>A	c.(2533-2535)TCC>TCA	p.S845S	NCAPG2_uc010lqu.1_Silent_p.S637S|NCAPG2_uc003wnw.1_RNA|NCAPG2_uc003wnx.1_Silent_p.S845S|NCAPG2_uc011kwe.1_Silent_p.S845S|NCAPG2_uc011kwc.1_Silent_p.S346S|NCAPG2_uc011kwd.1_Silent_p.S288S	NM_017760	NP_060230	Q86XI2	CNDG2_HUMAN	leucine zipper protein 5	845					cell division|chromosome condensation|mitosis	nucleus	methylated histone residue binding			ovary(1)|breast(1)|kidney(1)	3	Ovarian(565;0.152)	all_cancers(7;3.44e-11)|all_epithelial(9;3.05e-05)|all_hematologic(28;0.014)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.187)|STAD - Stomach adenocarcinoma(7;0.18)		CTTCCAACATGGACAAATACA	0.378													8	219					0.000151284	0.00173001	0.000151284	1	0
WDR60	55112	broad.mit.edu	37	7	158704364	158704364	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:158704364C>A	uc003woe.3	+	12	1742	c.1584C>A	c.(1582-1584)ACC>ACA	p.T528T	WDR60_uc010lqv.2_RNA|WDR60_uc010lqw.2_Silent_p.T160T	NM_018051	NP_060521	Q8WVS4	WDR60_HUMAN	WD repeat domain 60	528										ovary(2)|breast(1)|central_nervous_system(1)	4	Ovarian(565;0.152)	all_cancers(7;1.25e-09)|all_epithelial(9;0.000894)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)|STAD - Stomach adenocarcinoma(7;0.18)		AAAAAAATACCAAGCAGGTAA	0.323													12	198					0.000151284	0.00173001	0.000151284	1	0
WDR60	55112	broad.mit.edu	37	7	158716424	158716424	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:158716424G>T	uc003woe.3	+	17	2415	c.2257G>T	c.(2257-2259)GAT>TAT	p.D753Y	WDR60_uc010lqv.2_RNA|WDR60_uc010lqw.2_Missense_Mutation_p.D385Y	NM_018051	NP_060521	Q8WVS4	WDR60_HUMAN	WD repeat domain 60	753										ovary(2)|breast(1)|central_nervous_system(1)	4	Ovarian(565;0.152)	all_cancers(7;1.25e-09)|all_epithelial(9;0.000894)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)|STAD - Stomach adenocarcinoma(7;0.18)		GTTTTCCACCGGTCAGTGTCA	0.473													7	170					0.000157383	0.00173811	0.000157383	1	0
FBXO25	26260	broad.mit.edu	37	8	381441	381441	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:381441C>A	uc003wox.2	+	3	501	c.235C>A	c.(235-237)CAA>AAA	p.Q79K	FBXO25_uc003woy.2_Missense_Mutation_p.Q79K|FBXO25_uc003woz.2_Silent_p.L28L	NM_183421	NP_904357	Q8TCJ0	FBX25_HUMAN	F-box only protein 25 isoform 1	79	Interaction with beta-actin.					nucleus|SCF ubiquitin ligase complex	actin binding|ubiquitin-protein ligase activity			lung(1)	1		Ovarian(12;0.00965)|Colorectal(14;0.0815)|Myeloproliferative disorder(644;0.116)|all_neural(12;0.122)		Epithelial(5;3.14e-14)|OV - Ovarian serous cystadenocarcinoma(5;1.56e-07)|BRCA - Breast invasive adenocarcinoma(11;1.88e-06)		CACAAATACTCAAAGTAAGAT	0.264													7	137					0.000274275	0.00290969	0.000274275	1	0
ARHGEF10	9639	broad.mit.edu	37	8	1833827	1833827	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:1833827C>A	uc003wpr.2	+	11	1314	c.1136C>A	c.(1135-1137)CCG>CAG	p.P379Q	ARHGEF10_uc003wpq.1_Missense_Mutation_p.P404Q|ARHGEF10_uc003wps.2_Missense_Mutation_p.P341Q|ARHGEF10_uc003wpt.2_Missense_Mutation_p.P255Q|ARHGEF10_uc003wpv.2_Missense_Mutation_p.P112Q|ARHGEF10_uc010lre.2_Missense_Mutation_p.P59Q	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	404					centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		TGCAAGCACCCGGAAGCCATC	0.443													5	76					3.59834e-05	0.000429	3.59834e-05	1	0
TNKS	8658	broad.mit.edu	37	8	9437722	9437722	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:9437722C>G	uc003wss.2	+	2	732	c.727C>G	c.(727-729)CAC>GAC	p.H243D	TNKS_uc011kwv.1_Missense_Mutation_p.H243D|TNKS_uc011kww.1_Missense_Mutation_p.H6D	NM_003747	NP_003738	O95271	TNKS1_HUMAN	tankyrase, TRF1-interacting ankyrin-related	243	ANK 1.				mitotic spindle organization|mRNA transport|negative regulation of DNA binding|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of telomere maintenance via telomerase|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein poly-ADP-ribosylation|protein polyubiquitination|protein transport|spindle assembly|transmembrane transport|Wnt receptor signaling pathway	chromosome, centromeric region|Golgi membrane|microsome|nuclear chromosome, telomeric region|nuclear membrane|nuclear pore|pericentriolar material	NAD+ ADP-ribosyltransferase activity|protein binding|zinc ion binding			lung(4)|ovary(2)|kidney(1)	7				COAD - Colon adenocarcinoma(149;0.0467)		TGCTAATGTCCACGCTCGTGA	0.403													4	147					0	0	0.00024832	0	0
PRSS55	203074	broad.mit.edu	37	8	10396219	10396219	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:10396219G>C	uc003wta.2	+	5	990	c.975G>C	c.(973-975)TCG>TCC	p.S325S	uc010lru.2_Intron|PRSS55_uc003wtb.2_Intron	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	325	Extracellular (Potential).				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						CCCCAGTCTCGGGAGTCCCAG	0.527													4	149					0	0	0.00024832	0	0
SLC7A2	6542	broad.mit.edu	37	8	17409273	17409273	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:17409273G>A	uc011kyc.1	+	6	1002	c.833G>A	c.(832-834)GGT>GAT	p.G278D	SLC7A2_uc011kyd.1_Missense_Mutation_p.G318D|SLC7A2_uc011kye.1_Missense_Mutation_p.G318D|SLC7A2_uc011kyf.1_Missense_Mutation_p.G278D	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	278	Cytoplasmic (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	ATTTCCTTAGGTGAAGAAGTT	0.373													13	92					0	0	0.000958276	0	0
PSD3	23362	broad.mit.edu	37	8	18656860	18656860	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:18656860C>G	uc003wza.2	-	8	2130	c.2027G>C	c.(2026-2028)GGA>GCA	p.G676A	PSD3_uc003wyy.2_Missense_Mutation_p.G142A|PSD3_uc003wyz.2_5'UTR	NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	676	SEC7.				regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		GCAATGGACTCCATCTAAAGA	0.378													3	57					0	0	0.000602214	0	0
PIWIL2	55124	broad.mit.edu	37	8	22145101	22145101	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:22145101C>G	uc003xbn.2	+	7	952	c.804C>G	c.(802-804)ACC>ACG	p.T268T	PIWIL2_uc011kzf.1_Silent_p.T268T|PIWIL2_uc010ltv.2_Silent_p.T268T	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	268					DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		AAGCTGTCACCGGCAACGTCA	0.443											OREG0018608	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	70					0	0	0.00024832	0	0
KIAA1967	57805	broad.mit.edu	37	8	22475243	22475243	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:22475243C>A	uc003xch.2	+	16	2162	c.2025C>A	c.(2023-2025)TCC>TCA	p.S675S	KIAA1967_uc003xci.2_Silent_p.S675S|KIAA1967_uc003xcj.1_Silent_p.S344S	NM_199205	NP_954675	Q8N163	K1967_HUMAN	p30 DBC protein	675					apoptosis|positive regulation of apoptosis	mitochondrial matrix|nucleus	enzyme binding|enzyme inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00593)|Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		AGGTCCGGTCCGTTGCCTCAA	0.532													5	133					0.000274275	0.00290969	0.000274275	1	0
RHOBTB2	23221	broad.mit.edu	37	8	22863539	22863539	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:22863539G>T	uc003xcq.2	+	4	900	c.363G>T	c.(361-363)ATG>ATT	p.M121I	RHOBTB2_uc003xcp.2_Missense_Mutation_p.M143I|RHOBTB2_uc011kzp.1_Missense_Mutation_p.M128I	NM_015178	NP_055993	Q9BYZ6	RHBT2_HUMAN	Rho-related BTB domain containing 2 isoform 3	121	Rho-like.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			ovary(1)|lung(1)	2		Prostate(55;0.0513)|Breast(100;0.214)		Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		TCAAGACCATGTGGTACCCAG	0.562													7	240					0.000274275	0.00290969	0.000274275	1	0
NEFM	4741	broad.mit.edu	37	8	24775234	24775234	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:24775234G>T	uc003xed.3	+	3	1899	c.1866G>T	c.(1864-1866)GTG>GTT	p.V622V	NEFM_uc011lac.1_Intron|NEFM_uc010lue.2_Silent_p.V246V	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	622	6 X 13 AA approximate tandem repeats of K-S-P-V-[PS]-K-S-P-V-E-E-[KA]-[GAK].|1.|Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		AATCACCAGTGGAAGAGAAAG	0.483													6	79					0.000157383	0.00173811	0.000157383	1	0
PTK2B	2185	broad.mit.edu	37	8	27287612	27287612	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:27287612G>C	uc003xfn.1	+	11	1362	c.554G>C	c.(553-555)CGG>CCG	p.R185P	PTK2B_uc003xfo.1_Missense_Mutation_p.R185P|PTK2B_uc003xfp.1_Missense_Mutation_p.R185P|PTK2B_uc003xfq.1_Missense_Mutation_p.R185P|PTK2B_uc010luq.1_5'Flank|PTK2B_uc003xfr.1_5'Flank	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	185	FERM.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		TTCTCCAGGCGGTTCTTCAAG	0.567													6	198					0	0	0.000442599	0	0
CHRNA2	1135	broad.mit.edu	37	8	27327345	27327345	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:27327345G>C	uc010lur.2	-	3	836	c.227C>G	c.(226-228)CCG>CGG	p.P76R	CHRNA2_uc011lal.1_Missense_Mutation_p.P76R|CHRNA2_uc010lus.2_5'UTR	NM_000742	NP_000733	Q15822	ACHA2_HUMAN	cholinergic receptor, nicotinic, alpha	76	Extracellular.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)	1		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0208)|Epithelial(17;2.77e-10)|Colorectal(74;0.136)	Atracurium(DB00732)|Biperiden(DB00810)|Carbachol(DB00411)|Cisatracurium Besylate(DB00565)|Decamethonium(DB01245)|Dextromethorphan(DB00514)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Gallamine Triethiodide(DB00483)|Levallorphan(DB00504)|Mecamylamine(DB00657)|Metocurine(DB01336)|Metocurine Iodide(DB00416)|Mivacurium(DB01226)|Nicotine(DB00184)|Pancuronium(DB01337)|Pipecuronium(DB01338)|Rocuronium(DB00728)|Tubocurarine(DB01199)	GTTGGGCACCGGGCGCGCCCA	0.632													3	75					0	0	3.59834e-05	0	0
GPR124	25960	broad.mit.edu	37	8	37688264	37688264	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:37688264C>G	uc003xkj.2	+	7	1118	c.755C>G	c.(754-756)CCG>CGG	p.P252R	GPR124_uc010lvy.2_Missense_Mutation_p.P252R	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	252	Extracellular (Potential).|Ig-like.				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			CACCTCATCCCGTCCCTACGC	0.652													4	7					0	0	3.59834e-05	0	0
STAR	6770	broad.mit.edu	37	8	38008309	38008309	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:38008309C>T	uc003xkv.1	-	1	292	c.28G>A	c.(28-30)GCT>ACT	p.A10T	STAR_uc010lwc.1_Missense_Mutation_p.A10T	NM_001007243	NP_001007244	P49675	STAR_HUMAN	steroidogenic acute regulatory protein isoform	10					C21-steroid hormone biosynthetic process	mitochondrial intermembrane space	cholesterol transporter activity			ovary(1)	1	Colorectal(12;0.000442)	all_lung(54;0.0151)|Lung NSC(58;0.0295)		READ - Rectum adenocarcinoma(644;0.188)		GAGCTCCCAGCGCACAGCTTG	0.438													6	103					0	0	0.000157383	0	0
BAG4	9530	broad.mit.edu	37	8	38050275	38050275	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:38050275C>G	uc003xky.1	+	2	622	c.340C>G	c.(340-342)CCA>GCA	p.P114A	BAG4_uc003xkz.1_Intron	NM_004874	NP_004865	O95429	BAG4_HUMAN	BCL2-associated athanogene 4	114					anti-apoptosis|apoptosis|protein folding	cytoplasm|nucleus	receptor signaling protein activity			ovary(1)	1	Colorectal(12;0.000442)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.121)				GGCTCCTTACCCAAGTACATA	0.348													3	105					0	0	3.59834e-05	0	0
FGFR1	2260	broad.mit.edu	37	8	38283655	38283655	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:38283655G>T	uc003xlp.2	-	6	1672	c.730C>A	c.(730-732)CAG>AAG	p.Q244K	FGFR1_uc011lbo.1_Missense_Mutation_p.Q242K|FGFR1_uc011lbp.1_Missense_Mutation_p.Q155K|FGFR1_uc011lbq.1_Missense_Mutation_p.Q153K|FGFR1_uc010lwk.2_Missense_Mutation_p.Q236K|FGFR1_uc011lbr.1_RNA|FGFR1_uc011lbs.1_Missense_Mutation_p.Q84K|FGFR1_uc011lbt.1_Missense_Mutation_p.Q153K|FGFR1_uc011lbu.1_Missense_Mutation_p.Q275K|FGFR1_uc011lbv.1_Missense_Mutation_p.Q242K|FGFR1_uc011lbw.1_Missense_Mutation_p.Q155K|FGFR1_uc011lbx.1_Missense_Mutation_p.Q155K|FGFR1_uc003xlv.2_Missense_Mutation_p.Q155K|FGFR1_uc003xlu.2_Missense_Mutation_p.Q153K|FGFR1_uc003xlw.1_RNA	NM_023110	NP_075598	P11362	FGFR1_HUMAN	fibroblast growth factor receptor 1 isoform 1	244	Extracellular (Potential).|Ig-like C2-type 2.				axon guidance|cell growth|insulin receptor signaling pathway|MAPKKK cascade|positive regulation of cell proliferation|skeletal system development	extracellular region|integral to plasma membrane|membrane fraction	ATP binding|fibroblast growth factor receptor activity|heparin binding|protein homodimerization activity			lung(5)|central_nervous_system(5)|stomach(2)|breast(2)|ovary(1)	15	all_cancers(2;9.05e-47)|all_epithelial(2;2.64e-50)|all_lung(3;1.71e-23)|Lung NSC(2;3.61e-23)|Colorectal(12;0.000442)	Breast(189;1.48e-05)|all_lung(54;0.00354)|Lung NSC(58;0.0138)|Hepatocellular(245;0.065)	Epithelial(3;3.96e-34)|all cancers(3;3.06e-30)|BRCA - Breast invasive adenocarcinoma(5;2.28e-21)|COAD - Colon adenocarcinoma(9;0.24)		Palifermin(DB00039)	ACATCCAGCTGGTATGTGTGG	0.542		1	T	BCR|FOP|ZNF198|CEP1	MPD|NHL		Pfeiffer syndrome|Kallman syndrome				OREG0018722	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	119					0.000673444	0.00655963	0.000673444	1	0
IDO1	3620	broad.mit.edu	37	8	39781028	39781028	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:39781028G>C	uc003xnm.2	+	7	692	c.578G>C	c.(577-579)CGG>CCG	p.R193P	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	193					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	ATGCAAGAACGGGACACTTTG	0.358													3	66					0	0	0.00024832	0	0
POLB	5423	broad.mit.edu	37	8	42220189	42220189	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:42220189C>G	uc003xoz.1	+	11	794	c.681C>G	c.(679-681)ACC>ACG	p.T227T	POLB_uc003xpa.1_Intron|POLB_uc011lcs.1_Silent_p.T73T	NM_002690	NP_002681	P06746	DPOLB_HUMAN	DNA-directed DNA polymerase beta	227					DNA-dependent DNA replication	cytoplasm|nucleoplasm|spindle microtubule	DNA-(apurinic or apyrimidinic site) lyase activity|DNA-directed DNA polymerase activity|enzyme binding|metal ion binding|microtubule binding			ovary(1)|breast(1)	2	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;2.58e-12)|Lung NSC(13;4.24e-11)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.1)|Lung SC(25;0.211)	all_lung(54;0.00671)|Lung NSC(58;0.0184)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	BRCA - Breast invasive adenocarcinoma(8;3.18e-11)|Lung(22;0.00467)|OV - Ovarian serous cystadenocarcinoma(14;0.00523)|LUSC - Lung squamous cell carcinoma(45;0.024)		Cytarabine(DB00987)	TCACAGATACCCTGTCAAAGG	0.363								DNA_polymerases_(catalytic_subunits)					4	72					0	0	3.59834e-05	0	0
PRKDC	5591	broad.mit.edu	37	8	48817490	48817490	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:48817490C>G	uc003xqi.2	-	26	3038	c.2981G>C	c.(2980-2982)TGG>TCG	p.W994S	PRKDC_uc003xqj.2_Missense_Mutation_p.W994S|PRKDC_uc011ldh.1_Missense_Mutation_p.W994S	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	994					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				GTTAGTGAACCAGTGAATCAG	0.363								NHEJ					5	166					0	0	0.000602214	0	0
SNAI2	6591	broad.mit.edu	37	8	49831458	49831458	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:49831458T>C	uc003xqp.2	-	3	879	c.715A>G	c.(715-717)AAG>GAG	p.K239E		NM_003068	NP_003059	O43623	SNAI2_HUMAN	snail 2	239					canonical Wnt receptor signaling pathway|ectoderm and mesoderm interaction|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		all_cancers(86;0.0368)|all_epithelial(80;0.000624)|Lung NSC(129;0.0019)|all_lung(136;0.00502)				TGGTATTTCTTTACATCAGAA	0.493													22	128					0	0	0.000175454	0	0
SNAI2	6591	broad.mit.edu	37	8	49831547	49831547	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:49831547C>G	uc003xqp.2	-	3	790	c.626G>C	c.(625-627)GGG>GCG	p.G209A		NM_003068	NP_003059	O43623	SNAI2_HUMAN	snail 2	209					canonical Wnt receptor signaling pathway|ectoderm and mesoderm interaction|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.G209G(1)		ovary(2)	2		all_cancers(86;0.0368)|all_epithelial(80;0.000624)|Lung NSC(129;0.0019)|all_lung(136;0.00502)				AGGCTTCTCCCCTGGGGGTGG	0.408													4	74					0	0	0.00024832	0	0
PCMTD1	115294	broad.mit.edu	37	8	52732960	52732960	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:52732960G>A	uc003xqx.3	-	6	1366	c.1025C>T	c.(1024-1026)CCC>CTC	p.P342L	PCMTD1_uc011ldm.1_Missense_Mutation_p.P212L|PCMTD1_uc003xqw.3_Missense_Mutation_p.P342L|PCMTD1_uc011ldn.1_Missense_Mutation_p.P154L|PCMTD1_uc010lya.2_Missense_Mutation_p.P266L	NM_052937	NP_443169	Q96MG8	PCMD1_HUMAN	protein-L-isoaspartate (D-aspartate)	342						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity				0		Lung NSC(129;0.0795)|all_lung(136;0.144)				TTCAGGGAGGGGCAGCTTCAT	0.294													6	188					0	0	8.12818e-05	0	0
XKR4	114786	broad.mit.edu	37	8	56015760	56015760	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:56015760C>G	uc003xsf.2	+	1	744	c.712C>G	c.(712-714)CGG>GGG	p.R238G		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	238						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			CGGGGCTACCCGGGCCAGTGG	0.622													3	60					0	0	0.000602214	0	0
CHD7	55636	broad.mit.edu	37	8	61763180	61763180	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:61763180G>C	uc003xue.2	+	26	6010	c.5533G>C	c.(5533-5535)GGG>CGG	p.G1845R		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1845					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			TGGTGGTGACGGGTAAGAAGG	0.468													3	29					0	0	0.000602214	0	0
CHD7	55636	broad.mit.edu	37	8	61773534	61773534	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:61773534C>A	uc003xue.2	+	35	8157	c.7680C>A	c.(7678-7680)CCC>CCA	p.P2560P		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2560					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			TTCCTTCTCCCGGACAGCTGG	0.453													7	123					0.000442599	0.00445669	0.000442599	1	0
TRIM55	84675	broad.mit.edu	37	8	67086803	67086803	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:67086803C>A	uc003xvv.2	+	10	1848	c.1622C>A	c.(1621-1623)TCC>TAC	p.S541Y	TRIM55_uc003xvu.2_3'UTR|TRIM55_uc003xvw.2_Missense_Mutation_p.S445Y|TRIM55_uc003xvx.2_Missense_Mutation_p.S234Y	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	541						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			TTCTCCTTTTCCTGGTTGAAC	0.532													10	100					7.03913e-09	9.29976e-08	0.00010058	1	0
SGK3	23678	broad.mit.edu	37	8	67740916	67740916	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:67740916C>A	uc003xwr.2	+	7	744	c.445C>A	c.(445-447)CTG>ATG	p.L149M	SGK3_uc003xwp.2_Missense_Mutation_p.L143M|SGK3_uc003xwt.2_Missense_Mutation_p.L149M|SGK3_uc003xwu.2_Missense_Mutation_p.L149M	NM_001033578	NP_001028750	Q96BR1	SGK3_HUMAN	serum/glucocorticoid regulated kinase 3 isoform	149					cell communication|response to stress	cytoplasmic membrane-bounded vesicle|early endosome	ATP binding|phosphatidylinositol binding|protein serine/threonine kinase activity			ovary(1)|large_intestine(1)|lung(1)|breast(1)	4	Breast(64;0.186)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0046)|OV - Ovarian serous cystadenocarcinoma(28;0.0112)|all cancers(69;0.0141)|BRCA - Breast invasive adenocarcinoma(89;0.206)			GAACATCAACCTGGGACCGTC	0.328													8	205					0.000978159	0.00917326	0.000978159	1	0
ARFGEF1	10565	broad.mit.edu	37	8	68170034	68170034	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:68170034C>A	uc003xxo.1	-	17	2849	c.2459G>T	c.(2458-2460)AGT>ATT	p.S820I	ARFGEF1_uc003xxl.1_Missense_Mutation_p.S274I	NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine	820	SEC7.				exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			TGTATCCGCACTAGCAAAGAG	0.323													9	226					0.000978159	0.00917326	0.000978159	1	0
C8orf34	116328	broad.mit.edu	37	8	69445336	69445336	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:69445336G>T	uc010lyz.2	+	7	848	c.799G>T	c.(799-801)GTA>TTA	p.V267L	C8orf34_uc010lyy.1_Missense_Mutation_p.V267L|C8orf34_uc003xyb.2_Missense_Mutation_p.V242L	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	267					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			TACCCCATCTGTAACAGAAGA	0.353													5	94					0.000157383	0.00173811	0.000157383	1	0
TRAM1	23471	broad.mit.edu	37	8	71495998	71495998	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:71495998C>A	uc003xyo.1	-	9	947	c.777G>T	c.(775-777)TTG>TTT	p.L259F	TRAM1_uc011lfc.1_Missense_Mutation_p.L228F	NM_014294	NP_055109	Q15629	TRAM1_HUMAN	translocation associated membrane protein 1	259	Helical; (Potential).|TLC.				cotranslational protein targeting to membrane|transmembrane transport	endoplasmic reticulum membrane|integral to membrane	protein binding|receptor activity			ovary(1)	1			Epithelial(68;0.00679)|all cancers(69;0.0324)|OV - Ovarian serous cystadenocarcinoma(28;0.0509)			GAAGTCTTCCCAAAACAAAAA	0.368													7	141					0.000157383	0.00173811	0.000157383	1	0
MSC	9242	broad.mit.edu	37	8	72754962	72754962	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:72754962C>G	uc003xyx.1	-	2	873	c.555G>C	c.(553-555)TCG>TCC	p.S185S	uc011lff.1_5'Flank|uc003xyy.2_5'Flank	NM_005098	NP_005089	O60682	MUSC_HUMAN	musculin	185					transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0	Breast(64;0.176)		Epithelial(68;0.137)|BRCA - Breast invasive adenocarcinoma(89;0.203)			CCGGTCTTCCCGAGACCACGA	0.473													8	244					0	0	0.000151284	0	0
TRPA1	8989	broad.mit.edu	37	8	72936118	72936118	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:72936118C>G	uc003xza.2	-	26	3255	c.3080G>C	c.(3079-3081)GGG>GCG	p.G1027A	uc011lff.1_Intron|uc003xyy.2_Intron	NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	1027	Cytoplasmic (Potential).					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	TCTTATTTCCCCAGTGCAAAA	0.299													4	155					0	0	3.59834e-05	0	0
KCNB2	9312	broad.mit.edu	37	8	73849102	73849102	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:73849102C>A	uc003xzb.2	+	3	2100	c.1512C>A	c.(1510-1512)TCC>TCA	p.S504S		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	504	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			AAACAAGCTCCAACAAGTCTT	0.562													7	162					0.000673444	0.00655963	0.000673444	1	0
KCNB2	9312	broad.mit.edu	37	8	73850317	73850317	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:73850317C>G	uc003xzb.2	+	3	3315	c.2727C>G	c.(2725-2727)ACC>ACG	p.T909T		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	909	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CACGTGAAACCAGCATGTGAC	0.343													4	98					0	0	3.59834e-05	0	0
IL7	3574	broad.mit.edu	37	8	79652318	79652318	+	Splice_Site	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:79652318C>G	uc003ybg.2	-	3	749	c.148_splice	c.e3-1	p.D50_splice	IL7_uc003ybe.2_Splice_Site_p.D9_splice|IL7_uc011lfm.1_Splice_Site|IL7_uc003ybh.2_Splice_Site|IL7_uc003ybi.3_Splice_Site	NM_000880	NP_000871	P13232	IL7_HUMAN	interleukin 7 precursor						bone resorption|cell-cell signaling|humoral immune response|organ morphogenesis|positive regulation of B cell proliferation|positive regulation of T cell differentiation	extracellular space	cytokine activity|growth factor activity|interleukin-7 receptor binding				0						TCATGCTGTCCTGTAATAAAT	0.214													4	103					0	0	3.59834e-05	0	0
PAG1	55824	broad.mit.edu	37	8	81897257	81897257	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:81897257C>A	uc003ybz.2	-	7	1341	c.630G>T	c.(628-630)TCG>TCT	p.S210S		NM_018440	NP_060910	Q9NWQ8	PAG1_HUMAN	phosphoprotein associated with glycosphingolipid	210	Cytoplasmic (Potential).				epidermal growth factor receptor signaling pathway|intracellular signal transduction|T cell receptor signaling pathway	integral to membrane|intracellular|membrane raft|plasma membrane	SH2 domain binding|SH3/SH2 adaptor activity				0	Lung NSC(7;5.76e-06)|all_lung(9;2e-05)		BRCA - Breast invasive adenocarcinoma(6;0.0567)|Epithelial(68;0.0634)|all cancers(69;0.197)			GGAGCTCTTTCGAGGCAGAAG	0.488													5	124					5.18039e-06	6.44204e-05	0.000157383	1	0
CNGB3	54714	broad.mit.edu	37	8	87623853	87623853	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:87623853G>A	uc003ydx.2	-	14	1671	c.1625C>T	c.(1624-1626)TCC>TTC	p.S542F	CNGB3_uc010maj.2_Missense_Mutation_p.S404F	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	542	Cytoplasmic (Potential).|cGMP (By similarity).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						ATAGAGAACGGATTTCAATCT	0.328													24	118					0	0	0.000184323	0	0
CNGB3	54714	broad.mit.edu	37	8	87666242	87666242	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:87666242G>A	uc003ydx.2	-	7	947	c.901C>T	c.(901-903)CAG>TAG	p.Q301*	CNGB3_uc010maj.2_Nonsense_Mutation_p.Q163*	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	301	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						TCACCTACCTGAAATTTTGTA	0.289													14	78					0	0	0.000308642	0	0
RBM12B	389677	broad.mit.edu	37	8	94748352	94748352	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:94748352G>T	uc003yfz.2	-	3	480	c.287C>A	c.(286-288)CCA>CAA	p.P96Q		NM_203390	NP_976324	Q8IXT5	RB12B_HUMAN	RNA binding motif protein 12B	96							nucleotide binding|RNA binding				0	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			CCCAGATCCTGGACGCCCTCT	0.398													8	208					0.000442599	0.00445669	0.000442599	1	0
KIAA1429	25962	broad.mit.edu	37	8	95504023	95504023	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:95504023C>G	uc003ygo.1	-	22	4936	c.4923G>C	c.(4921-4923)CAG>CAC	p.Q1641H	KIAA1429_uc010maz.1_Intron	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1641					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			TCTGTTTTCTCTGACGAAAAA	0.458													4	133					0	0	0.00024832	0	0
KIAA1429	25962	broad.mit.edu	37	8	95507125	95507126	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:95507125_95507126GG>TT	uc003ygo.1	-	20	4616_4617	c.4603_4604CC>AA	c.(4603-4605)CCA>AAA	p.P1535K	KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1535					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			AGCCTGAAATGGAGTGAACCAC	0.322													11	359					0	0	6.4e-05	0	0
INTS8	55656	broad.mit.edu	37	8	95835714	95835714	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:95835714C>G	uc003yhb.2	+	1	181	c.55C>G	c.(55-57)CCG>GCG	p.P19A	INTS8_uc003yha.1_Missense_Mutation_p.P19A|INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	19					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					GCCCTGCACCCCGCCGCAGAC	0.721													4	51					0	0	8.12818e-05	0	0
INTS8	55656	broad.mit.edu	37	8	95863801	95863801	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:95863801G>T	uc003yhb.2	+	13	1654	c.1528G>T	c.(1528-1530)GGT>TGT	p.G510C	INTS8_uc003yha.1_Missense_Mutation_p.G510C|INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Missense_Mutation_p.G337C	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	510					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					TGTCAACATTGGTCAGTTAGA	0.308													12	513					0.000958276	0.00917326	0.000958276	1	0
INTS8	55656	broad.mit.edu	37	8	95888484	95888484	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:95888484G>C	uc003yhb.2	+	25	2924	c.2798G>C	c.(2797-2799)TGG>TCG	p.W933S	INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Missense_Mutation_p.W743S	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	933					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					GACTACATATGGGATGTTACC	0.299													7	529					0	0	0.000978159	0	0
CCNE2	9134	broad.mit.edu	37	8	95894442	95894442	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:95894442G>C	uc003yhc.2	-	11	1128	c.1019C>G	c.(1018-1020)CCA>CGA	p.P340R	CCNE2_uc003yhd.2_Missense_Mutation_p.P340R	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	340					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					CAGCTTCACTGGACTAGTACT	0.348													7	485					0	0	0.000157383	0	0
CCNE2	9134	broad.mit.edu	37	8	95897703	95897703	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:95897703G>T	uc003yhc.2	-	8	793	c.684C>A	c.(682-684)CTC>CTA	p.L228L	CCNE2_uc003yhd.2_Silent_p.L228L	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	228					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					TTAATATAATGAGTTCCATCC	0.299													17	408					0.000295444	0.00313186	0.000295444	1	0
PLEKHF2	79666	broad.mit.edu	37	8	96166567	96166567	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:96166567G>C	uc003yhn.1	+	2	542	c.295G>C	c.(295-297)GGA>CGA	p.G99R		NM_024613	NP_078889	Q9H8W4	PKHF2_HUMAN	phafin 2	99	PH.					transport vesicle	metal ion binding|protein binding			ovary(2)	2	Breast(36;3.18e-05)					CTTAAGGAATGGATGGCTAAT	0.343													6	338					0	0	3.59834e-05	0	0
TSPYL5	85453	broad.mit.edu	37	8	98289019	98289019	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:98289019C>A	uc003yhy.2	-	1	1158	c.1054G>T	c.(1054-1056)GGG>TGG	p.G352W		NM_033512	NP_277047	Q86VY4	TSYL5_HUMAN	TSPY-like 5	352					cellular response to gamma radiation|nucleosome assembly|positive regulation of cell proliferation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|regulation of growth	nucleus	protein binding			large_intestine(1)|ovary(1)	2	Breast(36;2.56e-06)					GAAAACCACCCAAAGAAACTA	0.488													9	170					0.000673444	0.00655963	0.000673444	1	0
PABPC1	26986	broad.mit.edu	37	8	101724615	101724616	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:101724615_101724616GG>TT	uc003yjs.1	-	7	1450_1451	c.946_947CC>AA	c.(946-948)CCA>AAA	p.P316K	PABPC1_uc011lhc.1_Missense_Mutation_p.P284K|PABPC1_uc011lhd.1_Missense_Mutation_p.P271K|PABPC1_uc003yjt.1_Missense_Mutation_p.P313K|PABPC1_uc003yju.2_RNA	NM_002568	NP_002559	P11940	PABP1_HUMAN	poly(A) binding protein, cytoplasmic 1	316	RRM 4.				mRNA polyadenylation|mRNA stabilization|negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|translation	catalytic step 2 spliceosome|cytosol	nucleotide binding|poly(A) RNA binding|protein C-terminus binding|translation activator activity				0	all_cancers(14;6.8e-05)|all_epithelial(15;3.16e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;6.37e-11)|all cancers(13;1.11e-08)|OV - Ovarian serous cystadenocarcinoma(57;3.91e-05)|STAD - Stomach adenocarcinoma(118;0.206)			TGTACCAAATGGAGAAAACTCT	0.287													21	393					0	0	6.4e-05	0	0
UBR5	51366	broad.mit.edu	37	8	103274169	103274169	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:103274169G>C	uc003ykr.1	-	55	7849	c.7816C>G	c.(7816-7818)CTG>GTG	p.L2606V	UBR5_uc003yks.1_Missense_Mutation_p.L2605V|UBR5_uc003ykq.2_Missense_Mutation_p.L117V	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	2606	HECT.				cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			TCTTTACACAGGTCAATTGCA	0.408													4	155					0	0	0.000602214	0	0
AZIN1	51582	broad.mit.edu	37	8	103842067	103842067	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:103842067G>C	uc003ykx.2	-	11	1744	c.1002C>G	c.(1000-1002)ACC>ACG	p.T334T	AZIN1_uc003yky.2_Silent_p.T334T	NM_015878	NP_056962	O14977	AZIN1_HUMAN	ornithine decarboxylase antizyme inhibitor	334					polyamine biosynthetic process|regulation of cellular amino acid metabolic process	cytosol	catalytic activity|protein binding				0	Lung NSC(17;0.000143)|all_lung(17;0.000294)		OV - Ovarian serous cystadenocarcinoma(57;0.000196)|STAD - Stomach adenocarcinoma(118;0.0414)			CCTCTGGAATGGTATTTAAGT	0.348													4	108					0	0	0.00024832	0	0
SLC30A8	169026	broad.mit.edu	37	8	118174071	118174072	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:118174071_118174072GG>TT	uc003yoh.2	+	5	897_898	c.667_668GG>TT	c.(667-669)GGA>TTA	p.G223L	SLC30A8_uc010mcz.2_Missense_Mutation_p.G174L|SLC30A8_uc011lia.1_Missense_Mutation_p.G174L|SLC30A8_uc003yog.2_Missense_Mutation_p.G174L	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	223	Helical; (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			GCATGCCCTTGGAGATCTATTT	0.426													9	367					0	0	6.4e-05	0	0
TAF2	6873	broad.mit.edu	37	8	120816186	120816186	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:120816186G>C	uc003you.2	-	5	762	c.492C>G	c.(490-492)CCC>CCG	p.P164P		NM_003184	NP_003175	Q6P1X5	TAF2_HUMAN	TBP-associated factor 2	164					G2/M transition of mitotic cell cycle|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor TFIID complex|transcription factor TFTC complex	metallopeptidase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			large_intestine(2)|ovary(2)|kidney(1)|skin(1)	6	Lung NSC(37;9.35e-07)|Ovarian(258;0.011)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			CCTCTACACTGGGTACCACAA	0.358													4	146					0	0	3.59834e-05	0	0
COL14A1	7373	broad.mit.edu	37	8	121256207	121256207	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:121256207G>C	uc003yox.2	+	20	2704	c.2439G>C	c.(2437-2439)ACG>ACC	p.T813T	COL14A1_uc003yoy.2_Silent_p.T491T	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	813	Fibronectin type-III 6.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CCATCTACACGGATGGCGAAG	0.478													4	146					0	0	3.59834e-05	0	0
MTBP	27085	broad.mit.edu	37	8	121466145	121466145	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:121466145G>C	uc003ypc.1	+	5	529	c.484G>C	c.(484-486)GGT>CGT	p.G162R	MTBP_uc011lie.1_RNA	NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	162					cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			TCCTGCTCCTGGTAATATTTT	0.308													5	172					0	0	0.000157383	0	0
ATAD2	29028	broad.mit.edu	37	8	124335205	124335205	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:124335205C>G	uc003yqh.3	-	27	4212	c.4104G>C	c.(4102-4104)AAG>AAC	p.K1368N	ATAD2_uc011lii.1_Missense_Mutation_p.K1159N|ATAD2_uc003yqi.3_RNA	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	1368					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			TATCATGGTCCTTGCGATGCC	0.318													5	169					0	0	0.000602214	0	0
ATAD2	29028	broad.mit.edu	37	8	124349872	124349872	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:124349872G>C	uc003yqh.3	-	21	3152	c.3044C>G	c.(3043-3045)CCT>CGT	p.P1015R	ATAD2_uc011lii.1_Missense_Mutation_p.P806R|ATAD2_uc003yqi.3_RNA	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	1015	Bromo.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			TACCTCATCAGGGTCAACAGG	0.368													5	102					0	0	8.12818e-05	0	0
FER1L6	654463	broad.mit.edu	37	8	125082819	125082819	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:125082819C>G	uc003yqw.2	+	30	4152	c.3946C>G	c.(3946-3948)CGA>GGA	p.R1316G	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1316	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			TGATGGAGACCGAGTCATAGG	0.398													4	109					0	0	3.59834e-05	0	0
TMEM65	157378	broad.mit.edu	37	8	125343006	125343008	+	Missense_Mutation	TNP	GGG	TCT	TCT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:125343006_125343008GGG>TCT	uc010mdl.2	-	2	872_874	c.330_332CCC>AGA	c.(328-333)ACCCCA>ACAGAA	p.P111E		NM_194291	NP_919267	Q6PI78	TMM65_HUMAN	transmembrane protein 65	111	Helical; (Potential).					integral to membrane					0	Lung NSC(37;1.18e-11)|Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			CAGCTGTCCTGGGGTGGGTGGTG	0.36													6	74					0	0	6.4e-05	0	0
SQLE	6713	broad.mit.edu	37	8	126017790	126017790	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:126017790C>G	uc011liq.1	+	3	1494	c.568C>G	c.(568-570)CAG>GAG	p.Q190E		NM_003129	NP_003120	Q14534	ERG1_HUMAN	squalene epoxidase	190					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome	flavin adenine dinucleotide binding|squalene monooxygenase activity			ovary(1)|breast(1)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)		Butenafine(DB01091)|Naftifine(DB00735)|Terbinafine(DB00857)	TCTTGATGCCCAGGTTGTAAA	0.413													5	206					0	0	8.12818e-05	0	0
NSMCE2	286053	broad.mit.edu	37	8	126114627	126114627	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:126114627G>T	uc003yrw.2	+	3	283	c.55G>T	c.(55-57)GGT>TGT	p.G19C	NSMCE2_uc003yrv.2_Missense_Mutation_p.G19C	NM_173685	NP_775956	Q96MF7	NSE2_HUMAN	non-SMC element 2, MMS21 homolog	19					DNA recombination|DNA repair	nucleus	ligase activity|zinc ion binding			breast(1)	1	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)			CTCCTTCAGTGGTGTAGAGTC	0.418													10	358					0.000978159	0.00917326	0.000978159	1	0
NSMCE2	286053	broad.mit.edu	37	8	126194344	126194344	+	Splice_Site	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:126194344G>T	uc003yrw.2	+	5	493	c.265_splice	c.e5-1	p.V89_splice	NSMCE2_uc003yrv.2_Splice_Site_p.V89_splice	NM_173685	NP_775956	Q96MF7	NSE2_HUMAN	non-SMC element 2, MMS21 homolog						DNA recombination|DNA repair	nucleus	ligase activity|zinc ion binding			breast(1)	1	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)			GTCTCCCTTAGGTGAAAGAAG	0.294													10	277					0.000978159	0.00917326	0.000978159	1	0
NSMCE2	286053	broad.mit.edu	37	8	126369990	126369990	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:126369990G>T	uc003yrw.2	+	7	784	c.556G>T	c.(556-558)GGC>TGC	p.G186C		NM_173685	NP_775956	Q96MF7	NSE2_HUMAN	non-SMC element 2, MMS21 homolog	186	SP-RING-type.				DNA recombination|DNA repair	nucleus	ligase activity|zinc ion binding			breast(1)	1	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)			TAAAGTGTGTGGCCACACCTA	0.468													9	260					0.000978159	0.00917326	0.000978159	1	0
ASAP1	50807	broad.mit.edu	37	8	131179822	131179823	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:131179822_131179823CG>AT	uc003yta.1	-	10	896_897	c.868_869CG>AT	c.(868-870)CGA>ATA	p.R290I	ASAP1_uc003ysz.1_Missense_Mutation_p.R98I|ASAP1_uc011liw.1_Missense_Mutation_p.R283I	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	290					cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						TATTAAGTCTCGGAGTGCAGTT	0.366													6	274					0	0	6.4e-05	0	0
KCNQ3	3786	broad.mit.edu	37	8	133192412	133192412	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:133192412G>C	uc003ytj.2	-	4	994	c.769C>G	c.(769-771)CAC>GAC	p.H257D	KCNQ3_uc010mdt.2_Missense_Mutation_p.H257D	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	257					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			ACTTTGCTGTGGGCACAGATG	0.597													4	49					0	0	3.59834e-05	0	0
NDRG1	10397	broad.mit.edu	37	8	134292501	134292501	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:134292501C>T	uc003yuh.2	-	3	659	c.73G>A	c.(73-75)GGC>AGC	p.G25S	NDRG1_uc003yug.2_Missense_Mutation_p.G25S|NDRG1_uc010mee.2_5'UTR|NDRG1_uc010mef.2_Intron|NDRG1_uc011ljh.1_5'UTR|NDRG1_uc011lji.1_Intron	NM_001135242	NP_001128714	Q92597	NDRG1_HUMAN	N-myc downstream regulated 1	25					cellular response to hypoxia|response to metal ion	cytoplasm|microtubule cytoskeleton|nucleus|plasma membrane	protein binding			ovary(4)	4	all_epithelial(106;4.26e-24)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			TGCAGGAGGCCGGTGATGGTC	0.408													5	90					0	0	0.000602214	0	0
ZFAT	57623	broad.mit.edu	37	8	135600607	135600607	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:135600607G>A	uc003yup.2	-	9	2770	c.2595C>T	c.(2593-2595)CTC>CTT	p.L865L	ZFAT_uc003yun.2_Silent_p.L853L|ZFAT_uc003yuo.2_Silent_p.L853L|ZFAT_uc010meh.2_Silent_p.L853L|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Silent_p.L853L|ZFAT_uc010mej.2_Silent_p.L803L	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	865					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			CCCTCCTCCCGAGAACCTCAG	0.453													4	11					0	0	0.000602214	0	0
DENND3	22898	broad.mit.edu	37	8	142151361	142151361	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:142151361C>G	uc003yvy.2	+	4	599	c.321C>G	c.(319-321)CCC>CCG	p.P107P	DENND3_uc003yvw.1_Silent_p.P120P|DENND3_uc003yvx.2_Missense_Mutation_p.P186R|DENND3_uc010mep.2_Silent_p.P120P	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	107	DENN.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			GCTTCGTGCCCTTCGCGGTGT	0.587													4	110					0	0	0.00024832	0	0
BAI1	575	broad.mit.edu	37	8	143562943	143562943	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:143562943G>A	uc003ywm.2	+	10	2184	c.2001G>A	c.(1999-2001)CAG>CAA	p.Q667Q		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	667	Extracellular (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					AGGTCATCCAGACACTGGTGG	0.627													4	18					0	0	0.000602214	0	0
CYP11B1	1584	broad.mit.edu	37	8	143961094	143961094	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:143961094C>T	uc003yxi.2	-	1	143	c.136G>A	c.(136-138)GGC>AGC	p.G46S	CYP11B1_uc003yxj.2_Missense_Mutation_p.G46S|CYP11B1_uc010mey.2_Missense_Mutation_p.G46S	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	46					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	CACCTGTTGCCTGGACGCCGG	0.632									Familial_Hyperaldosteronism_type_I				7	83					0	0	0.000274275	0	0
ZC3H3	23144	broad.mit.edu	37	8	144620361	144620361	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:144620361G>A	uc003yyd.2	-	2	1205	c.1176C>T	c.(1174-1176)TTC>TTT	p.F392F		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	392					mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			ACTGCCAACGGAAGGAGGAAG	0.647													5	92					0	0	0.000602214	0	0
SCRIB	23513	broad.mit.edu	37	8	144892746	144892746	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:144892746G>C	uc003yzp.1	-	13	1440	c.1433C>G	c.(1432-1434)CCC>CGC	p.P478R	SCRIB_uc003yzo.1_Missense_Mutation_p.P478R	NM_015356	NP_056171	Q14160	SCRIB_HUMAN	scribble isoform b	478	Sufficient for targeting to adherens junction and to inhibit cell proliferation.				activation of Rac GTPase activity|apoptosis involved in morphogenesis|cell migration|cell proliferation|cell-cell adhesion|establishment of apical/basal cell polarity|interspecies interaction between organisms|mammary gland duct morphogenesis|negative regulation of mitotic cell cycle|positive chemotaxis|positive regulation of apoptosis|positive regulation of receptor recycling|protein localization to adherens junction	cell-cell adherens junction|Scrib-APC-beta-catenin complex	protein binding			urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)|pancreas(1)	5	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;1.12e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			GAGCTCGCTGGGGTGAGGTGT	0.667													4	108					0	0	0.000602214	0	0
PARP10	84875	broad.mit.edu	37	8	145059111	145059111	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:145059111G>T	uc003zal.3	-	5	1167	c.1059C>A	c.(1057-1059)CCC>CCA	p.P353P	PARP10_uc003zak.3_Silent_p.P59P|PARP10_uc011lku.1_Silent_p.P365P|PARP10_uc011lkv.1_RNA|PARP10_uc003zam.2_Silent_p.P353P|PARP10_uc010mfn.1_Silent_p.P268P|PARP10_uc010mfo.1_3'UTR	NM_032789	NP_116178	Q53GL7	PAR10_HUMAN	poly (ADP-ribose) polymerase family, member 10	353						Golgi apparatus|nucleolus	NAD+ ADP-ribosyltransferase activity|nucleotide binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)|pancreas(1)	6	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GAGACCCCATGGGCATCGAGC	0.642													7	98					3.07112e-06	3.84493e-05	0.000978159	1	0
CYC1	1537	broad.mit.edu	37	8	145152211	145152211	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:145152211G>C	uc003zaz.3	+	7	993	c.950G>C	c.(949-951)CGG>CCG	p.R317P	CYC1_uc003zay.2_Missense_Mutation_p.R258P	NM_001916	NP_001907	P08574	CY1_HUMAN	cytochrome c-1	317					respiratory electron transport chain|transport	cell junction|integral to membrane|mitochondrial inner membrane|respiratory chain	electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity|heme binding				0	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;8.71e-40)|all cancers(56;3e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CTGAAGAGTCGGAAGCTGGCA	0.572													4	62					0	0	0.000157383	0	0
GPR172A	79581	broad.mit.edu	37	8	145584615	145584615	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:145584615G>T	uc003zcc.1	+	5	1435	c.1278G>T	c.(1276-1278)CCG>CCT	p.P426P	FBXL6_uc003zbz.2_5'Flank|FBXL6_uc003zca.2_5'Flank|FBXL6_uc003zcb.2_5'Flank|FBXL6_uc010mfx.2_5'Flank|GPR172A_uc003zcd.1_Silent_p.P426P|GPR172A_uc003zce.1_Silent_p.P426P|GPR172A_uc010mfy.1_Silent_p.P426P|GPR172A_uc003zcf.1_Silent_p.P426P|GPR172A_uc011llc.1_Silent_p.P338P	NM_024531	NP_078807	Q9HAB3	RFT3_HUMAN	G protein-coupled receptor 172A precursor	426						integral to plasma membrane	receptor activity|riboflavin transporter activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			TGTTCCCCCCGACCAGCATCT	0.662													5	102					7.48243e-07	9.56199e-06	0.000442599	1	0
PPP1R16A	84988	broad.mit.edu	37	8	145724424	145724424	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:145724424G>A	uc003zdd.2	+	4	1369	c.456G>A	c.(454-456)CTG>CTA	p.L152L	uc003zde.1_5'Flank|PPP1R16A_uc003zdf.2_Silent_p.L152L	NM_032902	NP_116291	Q96I34	PP16A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	152	ANK 3.					plasma membrane	protein binding				0	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			ACCTGCACCTGGTGGAGCTGC	0.642													4	48					0	0	0.00024832	0	0
ZNF7	7553	broad.mit.edu	37	8	146068465	146068465	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:146068465G>C	uc003zeg.3	+	5	2110	c.1973G>C	c.(1972-1974)GGG>GCG	p.G658A	ZNF7_uc010mge.2_Missense_Mutation_p.G669A|ZNF7_uc011lln.1_Missense_Mutation_p.G562A|ZNF7_uc003zeh.2_Intron|ZNF7_uc003zek.3_Missense_Mutation_p.G562A|COMMD5_uc003zel.1_Intron	NM_003416	NP_003407	P17097	ZNF7_HUMAN	zinc finger protein 7	658					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4	all_cancers(97;1.03e-11)|all_epithelial(106;6.69e-11)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.0812)|Ovarian(118;0.0822)|Acute lymphoblastic leukemia(644;0.143)	Epithelial(56;8.75e-39)|OV - Ovarian serous cystadenocarcinoma(54;1.13e-38)|all cancers(56;8.48e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0355)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;2.11e-07)		ATTCACACCGGGGAGAAGCCT	0.388													4	166					0	0	0.00024832	0	0
CBWD1	55871	broad.mit.edu	37	9	172083	172084	+	Missense_Mutation	DNP	GG	TC	TC			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:172083_172084GG>TC	uc003zga.3	-	4	533_534	c.427_428CC>GA	c.(427-429)CCT>GAT	p.P143D	CBWD1_uc003zgb.3_Missense_Mutation_p.P107D|CBWD1_uc003zgc.3_Missense_Mutation_p.P143D|CBWD1_uc011llr.1_Missense_Mutation_p.P107D	NM_018491	NP_060961	Q9BRT8	CBWD1_HUMAN	COBW domain containing 1 isoform 1	143							ATP binding|protein binding			ovary(1)	1	all_lung(41;0.218)	all_cancers(5;3.04e-16)|all_epithelial(5;4.68e-12)|all_lung(10;1.94e-10)|Lung NSC(10;3.61e-10)|Acute lymphoblastic leukemia(5;0.00439)|Breast(48;0.0148)|all_hematologic(5;0.024)|Prostate(43;0.122)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		CTTCTTACCAGGGTCTGCTAAT	0.347													14	266					0	0	6.4e-05	0	0
DOCK8	81704	broad.mit.edu	37	9	463586	463586	+	Silent	SNP	C	A	A	rs139515839	byFrequency	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:463586C>A	uc003zgf.2	+	47	6250	c.6138C>A	c.(6136-6138)CTC>CTA	p.L2046L	DOCK8_uc010mgu.2_Silent_p.L1348L|DOCK8_uc010mgv.2_Silent_p.L1946L|DOCK8_uc003zgk.2_Silent_p.L1504L	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	2046				L -> F (in Ref. 8; AAG42221).	blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		AGCAGGAACTCAAAAAGAACT	0.413													7	67					8.12818e-05	0.000938396	8.12818e-05	1	0
KIAA2026	158358	broad.mit.edu	37	9	5924689	5924689	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:5924689C>G	uc003zjq.3	-	7	2871	c.2655G>C	c.(2653-2655)CTG>CTC	p.L885L	KIAA2026_uc010mht.2_Silent_p.L60L	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	885										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		CCAGGATATCCAGAGGTTCTG	0.378													5	132					0	0	0.000157383	0	0
GLDC	2731	broad.mit.edu	37	9	6645247	6645247	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:6645247C>T	uc003zkc.2	-	1	446	c.253G>A	c.(253-255)GCG>ACG	p.A85T		NM_000170	NP_000161	P23378	GCSP_HUMAN	glycine dehydrogenase (decarboxylating)	85					glycine catabolic process	mitochondrion	electron carrier activity|glycine dehydrogenase (decarboxylating) activity|lyase activity|pyridoxal phosphate binding			ovary(2)	2		Acute lymphoblastic leukemia(23;0.161)		GBM - Glioblastoma multiforme(50;0.0421)|Lung(218;0.134)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	GTCCTTACCGCCAGCCCCAAG	0.706													3	3					0	0	6.4e-05	0	0
MPDZ	8777	broad.mit.edu	37	9	13133826	13133826	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:13133826G>T	uc010mia.1	-	31	4518	c.4461C>A	c.(4459-4461)CCC>CCA	p.P1487P	MPDZ_uc003zky.3_Silent_p.P49P|MPDZ_uc010mib.2_Silent_p.P192P|MPDZ_uc010mhx.2_Silent_p.P309P|MPDZ_uc011lmm.1_Silent_p.P346P|MPDZ_uc003zkz.3_Silent_p.P180P|MPDZ_uc010mhy.2_Silent_p.P1487P|MPDZ_uc010mhz.2_Silent_p.P1454P|MPDZ_uc011lmn.1_Silent_p.P1454P|MPDZ_uc003zlb.3_Silent_p.P1487P	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1487	PDZ 9.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		GATTTACCTTGGGAAGCTCCA	0.343													4	23					5.9392e-07	7.64979e-06	3.59834e-05	1	0
C9orf93	203238	broad.mit.edu	37	9	15723727	15723727	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:15723727C>G	uc003zmd.2	+	13	1789	c.1474C>G	c.(1474-1476)CAC>GAC	p.H492D	C9orf93_uc010mih.1_Missense_Mutation_p.H500D|C9orf93_uc003zme.2_Missense_Mutation_p.H407D|C9orf93_uc011lmu.1_Missense_Mutation_p.H500D	NM_173550	NP_775821	Q6TFL3	CI093_HUMAN	hypothetical protein LOC203238	492	Potential.										0				GBM - Glioblastoma multiforme(50;4.84e-07)		GATAGACTCTCACACTAAAAA	0.264													5	91					0	0	3.59834e-05	0	0
MLLT3	4300	broad.mit.edu	37	9	20346498	20346498	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:20346498C>G	uc003zoe.2	-	11	1909	c.1650G>C	c.(1648-1650)CTG>CTC	p.L550L	MLLT3_uc011lne.1_Silent_p.L518L|MLLT3_uc011lnf.1_Silent_p.L547L	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	550					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		TGGTTTTGTCCAGCGAGCAAA	0.373			T	MLL	ALL								4	80					0	0	3.59834e-05	0	0
KIAA1797	54914	broad.mit.edu	37	9	20990196	20990196	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:20990196C>G	uc003zog.1	+	44	5442	c.5079C>G	c.(5077-5079)CTC>CTG	p.L1693L	KIAA1797_uc003zoh.1_Silent_p.L1129L	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	1693						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		CTCTCCTCCTCGGCCTCAGTG	0.547													4	51					0	0	0.00024832	0	0
IFNA16	3449	broad.mit.edu	37	9	21217277	21217277	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:21217277C>G	uc003zor.1	-	1	34	c.28G>C	c.(28-30)GCC>CCC	p.A10P	IFNA14_uc003zoo.1_Intron	NM_002173	NP_002164	P05015	IFN16_HUMAN	interferon, alpha 16 precursor	10					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			skin(1)	1				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		ACCAGCACGGCCATCAGTAAA	0.498													4	66					0	0	3.59834e-05	0	0
IFNA17	3451	broad.mit.edu	37	9	21227774	21227774	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:21227774G>C	uc003zos.1	-	1	448	c.399C>G	c.(397-399)CCC>CCG	p.P133P	IFNA14_uc003zoo.1_Intron	NM_021268	NP_067091	P01571	IFN17_HUMAN	interferon, alpha 17 precursor	133					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding				0				Lung(24;2.13e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		CATTCATCAGGGGAGTCTCTT	0.458													4	170					0	0	0.000157383	0	0
IFNA6	3443	broad.mit.edu	37	9	21350530	21350530	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:21350530C>G	uc011lni.1	-	1	357	c.357G>C	c.(355-357)CTG>CTC	p.L119L		NM_021002	NP_066282	P05013	IFNA6_HUMAN	interferon, alpha 6 precursor	119					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		CACAGGCTTCCAGGTCATTCA	0.488													4	100					0	0	0.00024832	0	0
TEK	7010	broad.mit.edu	37	9	27172633	27172633	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:27172633G>C	uc003zqi.3	+	5	1090	c.648G>C	c.(646-648)TGG>TGC	p.W216C	TEK_uc010mjc.1_Missense_Mutation_p.W69C|TEK_uc011lnn.1_Missense_Mutation_p.W216C|TEK_uc011lno.1_Missense_Mutation_p.W216C|TEK_uc011lnp.1_Missense_Mutation_p.W112C|TEK_uc003zqj.1_Missense_Mutation_p.W193C	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	216	Extracellular (Potential).|EGF-like 1.				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		CCCAGAAGTGGGGACCTGAAT	0.373													3	39					0	0	0.000602214	0	0
ACO1	48	broad.mit.edu	37	9	32407274	32407274	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:32407274C>A	uc003zqw.3	+	3	268	c.113C>A	c.(112-114)TCG>TAG	p.S38*	ACO1_uc010mjh.1_5'UTR|ACO1_uc003zqx.3_Nonsense_Mutation_p.S38*|ACO1_uc003zqy.3_RNA	NM_002197	NP_002188	P21399	ACOC_HUMAN	aconitase 1	38					citrate metabolic process|response to iron(II) ion|tricarboxylic acid cycle	cytosol|endoplasmic reticulum|Golgi apparatus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron-responsive element binding|isocitrate hydro-lyase (cis-aconitate-forming) activity|metal ion binding|protein binding				0			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;3.94e-06)		TTACCATTTTCGATCAGAGTT	0.383													5	111					2.7689e-08	3.63906e-07	8.12818e-05	1	0
DNAJA1	3301	broad.mit.edu	37	9	33036685	33036685	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:33036685C>G	uc003zsd.1	+	7	1055	c.872C>G	c.(871-873)CCA>CGA	p.P291R	DNAJA1_uc011lnt.1_Missense_Mutation_p.P134R|DNAJA1_uc003zse.1_Missense_Mutation_p.P291R	NM_001539	NP_001530	P31689	DNJA1_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 1	291					protein folding|response to heat|response to unfolded protein	membrane	ATP binding|heat shock protein binding|low-density lipoprotein particle receptor binding|metal ion binding|unfolded protein binding				0			LUSC - Lung squamous cell carcinoma(29;0.0227)	GBM - Glioblastoma multiforme(74;0.102)		ACCTCTCATCCAGGTATGGGA	0.428													3	42					0	0	0.00024832	0	0
DCAF12	25853	broad.mit.edu	37	9	34125095	34125095	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:34125095C>A	uc003ztt.2	-	2	601	c.259G>T	c.(259-261)GGG>TGG	p.G87W		NM_015397	NP_056212	Q5T6F0	DCA12_HUMAN	DDB1 and CUL4 associated factor 12	87						centrosome|CUL4 RING ubiquitin ligase complex					0						TTAAGGGTCCCAAGGTGAAAC	0.493													6	94					0.000442599	0.00445669	0.000442599	1	0
UBAP1	51271	broad.mit.edu	37	9	34242074	34242074	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:34242074G>T	uc003ztx.2	+	4	1286	c.1051G>T	c.(1051-1053)GAG>TAG	p.E351*	UBAP1_uc010mka.1_Nonsense_Mutation_p.E387*|UBAP1_uc003zty.2_Nonsense_Mutation_p.E351*|UBAP1_uc011loi.1_Nonsense_Mutation_p.E387*|UBAP1_uc011loj.1_Nonsense_Mutation_p.E415*|KIF24_uc010mkb.2_Intron|UBAP1_uc003ztz.2_Nonsense_Mutation_p.E351*	NM_016525	NP_057609	Q9NZ09	UBAP1_HUMAN	ubiquitin associated protein 1	351						cytoplasm					0			LUSC - Lung squamous cell carcinoma(29;0.00272)			TGTGTGCACAGAGGAATCATC	0.473													7	114					0.000274275	0.00290969	0.000274275	1	0
FANCG	2189	broad.mit.edu	37	9	35074161	35074161	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:35074161G>A	uc003zwb.1	-	14	2305	c.1813C>T	c.(1813-1815)CGT>TGT	p.R605C	VCP_uc003zvy.2_5'Flank|VCP_uc003zvz.2_5'Flank|VCP_uc010mkh.1_5'Flank|VCP_uc010mki.1_5'Flank|FANCG_uc003zwa.1_Missense_Mutation_p.R347C|FANCG_uc010mkj.1_Missense_Mutation_p.R347C	NM_004629	NP_004620	O15287	FANCG_HUMAN	Fanconi anemia, complementation group G	605					cell cycle checkpoint|DNA repair|mitochondrion organization	mitochondrion|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|large_intestine(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			AAGGCGTCACGATCAGAGGGA	0.512			Mis|N|F|S			AML|leukemia		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				6	89					0	0	0.000442599	0	0
RECK	8434	broad.mit.edu	37	9	36110025	36110025	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:36110025C>G	uc003zyv.2	+	15	1923	c.1837C>G	c.(1837-1839)CGC>GGC	p.R613G	RECK_uc003zyw.2_Missense_Mutation_p.R485G|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	613						anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			GTGCTCTACCCGCCTTTGCCT	0.473													5	111					0	0	0.000602214	0	0
RECK	8434	broad.mit.edu	37	9	36118755	36118755	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:36118755C>T	uc003zyv.2	+	18	2341	c.2255C>T	c.(2254-2256)CCC>CTC	p.P752L	RECK_uc003zyw.2_Missense_Mutation_p.P624L|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	752	Kazal-like 2.					anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			TGCCCTCAGCCCTTTTGCAGA	0.498													4	51					0	0	0.00024832	0	0
RNF38	152006	broad.mit.edu	37	9	36357830	36357830	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:36357830G>C	uc003zzh.2	-	5	871	c.680C>G	c.(679-681)CCA>CGA	p.P227R	RNF38_uc003zzi.2_Missense_Mutation_p.P177R|RNF38_uc003zzj.2_Missense_Mutation_p.P144R|RNF38_uc003zzk.2_Missense_Mutation_p.P144R|RNF38_uc003zzl.2_Missense_Mutation_p.P151R|RNF38_uc003zzm.2_Missense_Mutation_p.P144R	NM_022781	NP_073618	Q9H0F5	RNF38_HUMAN	ring finger protein 38 isoform 1	227							zinc ion binding			central_nervous_system(1)	1			STAD - Stomach adenocarcinoma(86;0.228)			AGAGCATCCTGGGACCTGCTG	0.488													3	51					0	0	6.4e-05	0	0
GRHPR	9380	broad.mit.edu	37	9	37432088	37432088	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:37432088C>G	uc003zzu.1	+	8	859	c.818C>G	c.(817-819)CCA>CGA	p.P273R	GRHPR_uc003zzt.1_Missense_Mutation_p.P193R|GRHPR_uc003zzw.1_Missense_Mutation_p.P130R	NM_012203	NP_036335	Q9UBQ7	GRHPR_HUMAN	glyoxylate reductase/hydroxypyruvate reductase	273					cellular nitrogen compound metabolic process|excretion|glyoxylate metabolic process	peroxisomal matrix	glycerate dehydrogenase activity|glyoxylate reductase (NADP) activity|hydroxypyruvate reductase activity|NAD binding|protein binding				0				GBM - Glioblastoma multiforme(29;0.00687)		GTGACGAGCCCAGAACCACTG	0.562													3	53					0	0	3.59834e-05	0	0
FAM75A2	642265	broad.mit.edu	37	9	39361078	39361078	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:39361078C>G	uc004abm.2	+	4	3345	c.3316C>G	c.(3316-3318)CCT>GCT	p.P1106A		NM_001040065	NP_001035154	Q5RGS2	F75A2_HUMAN	hypothetical protein LOC642265	1106						integral to membrane					0				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		AATGTTTCCCCCTATTCACAA	0.478													5	300					0	0	8.12818e-05	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71549833	71549833	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:71549833G>C	uc004agu.2	+	13	1534	c.1229G>C	c.(1228-1230)CGG>CCG	p.R410P	PIP5K1B_uc011lrq.1_Missense_Mutation_p.R410P|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	410						endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		TCTAAGAAACGGTGCAATTCA	0.393													3	43					0	0	3.59834e-05	0	0
PTAR1	375743	broad.mit.edu	37	9	72349110	72349110	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:72349110G>C	uc004ahj.3	-	4	406	c.384C>G	c.(382-384)CTC>CTG	p.L128L	PTAR1_uc004ahi.2_Silent_p.L49L	NM_001099666	NP_001093136	Q7Z6K3	PTAR1_HUMAN	protein prenyltransferase alpha subunit repeat	128	PFTA 2.				protein prenylation		protein prenyltransferase activity			central_nervous_system(1)	1						TGGTTAAGGCGAGTTTTCCCA	0.333													3	64					0	0	6.4e-05	0	0
SMC5	23137	broad.mit.edu	37	9	72873997	72873997	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:72873997G>T	uc004ahr.2	+	1	120	c.3G>T	c.(1-3)ATG>ATT	p.M1I	uc004ahq.1_5'Flank	NM_015110	NP_055925	Q8IY18	SMC5_HUMAN	SMC5 protein	1					DNA recombination|DNA repair	chromosome|nucleus	ATP binding			ovary(2)|central_nervous_system(1)	3						AAGCCAGGATGGCGACTCCGA	0.662													4	15					3.59834e-05	0.000429	3.59834e-05	1	0
SMC5	23137	broad.mit.edu	37	9	72965084	72965084	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:72965084C>A	uc004ahr.2	+	23	3061	c.2944C>A	c.(2944-2946)CAA>AAA	p.Q982K	SMC5_uc011lry.1_Missense_Mutation_p.Q127K	NM_015110	NP_055925	Q8IY18	SMC5_HUMAN	SMC5 protein	982					DNA recombination|DNA repair	chromosome|nucleus	ATP binding			ovary(2)|central_nervous_system(1)	3						AAGTAGTACTCAACTGCATGA	0.328													6	81					8.12818e-05	0.000938396	8.12818e-05	1	0
TMEM2	23670	broad.mit.edu	37	9	74329859	74329859	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:74329859G>C	uc011lsa.1	-	15	3122	c.2582C>G	c.(2581-2583)CCC>CGC	p.P861R	TMEM2_uc010mos.2_Missense_Mutation_p.P798R|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	861						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		CCTGTTCCTGGGTAATGTTCG	0.443													3	52					0	0	0.000602214	0	0
GDA	9615	broad.mit.edu	37	9	74817503	74817503	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:74817503G>C	uc004aiq.2	+	3	412	c.229G>C	c.(229-231)GGG>CGG	p.G77R	GDA_uc011lse.1_Missense_Mutation_p.G3R|GDA_uc011lsf.1_Missense_Mutation_p.G3R|GDA_uc004air.2_Missense_Mutation_p.G77R|GDA_uc010mow.1_RNA|GDA_uc004ais.2_Missense_Mutation_p.G35R|GDA_uc004ait.1_Missense_Mutation_p.G3R	NM_004293	NP_004284	Q9Y2T3	GUAD_HUMAN	guanine deaminase	77					nervous system development|purine base metabolic process|purine nucleotide catabolic process	cytosol	guanine deaminase activity|zinc ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		Myeloproliferative disorder(762;0.0122)		Lung(182;0.0583)		CTTCATGCCTGGGCTGGTTGA	0.393													5	87					0	0	0.000157383	0	0
TMC1	117531	broad.mit.edu	37	9	75366811	75366811	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:75366811G>C	uc004aiz.1	+	11	1121	c.581G>C	c.(580-582)TGG>TCG	p.W194S	TMC1_uc010moz.1_Missense_Mutation_p.W152S|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_Missense_Mutation_p.W48S|TMC1_uc010mpa.1_Missense_Mutation_p.W48S	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	194	Cytoplasmic (Potential).				sensory perception of sound	integral to membrane				ovary(1)	1						TTCTTGAGATGGATGTATGGA	0.378													5	240					0	0	0.000442599	0	0
TMC1	117531	broad.mit.edu	37	9	75420357	75420357	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:75420357G>C	uc004aiz.1	+	18	2166	c.1626G>C	c.(1624-1626)GGG>GGC	p.G542G	TMC1_uc010moz.1_Silent_p.G500G|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_Silent_p.G396G|TMC1_uc010mpa.1_Silent_p.G396G	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	542	Cytoplasmic (Potential).				sensory perception of sound	integral to membrane				ovary(1)	1						TCCTCATTGGGGACTTTCTAA	0.388													4	201					0	0	0.000157383	0	0
RORB	6096	broad.mit.edu	37	9	77275561	77275561	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:77275561C>G	uc004aji.2	+	5	748	c.699C>G	c.(697-699)TCC>TCG	p.S233S	RORB_uc004ajh.2_Silent_p.S222S	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	233	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						TCATTAAGTCCCATTTGGAGA	0.393													6	169					0	0	3.59834e-05	0	0
C9orf41	138199	broad.mit.edu	37	9	77611470	77611470	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:77611470C>A	uc004ajq.2	-	6	1070	c.917G>T	c.(916-918)TGG>TTG	p.W306L	uc004ajp.2_RNA|C9orf41_uc011lsi.1_RNA	NM_152420	NP_689633	Q8N4J0	CI041_HUMAN	hypothetical protein LOC138199	306										ovary(1)|skin(1)	2						AATACAGTCCCAGGTATCTAA	0.303													7	110					5.18039e-06	6.44204e-05	0.000157383	1	0
PRUNE2	158471	broad.mit.edu	37	9	79320601	79320601	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:79320601C>G	uc010mpk.2	-	8	6713	c.6589G>C	c.(6589-6591)GGT>CGT	p.G2197R	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2197					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CTGTTGTCACCGTTTATTTCA	0.453													4	178					0	0	0.00024832	0	0
FRMD3	257019	broad.mit.edu	37	9	85928663	85928663	+	Splice_Site	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:85928663C>A	uc004ams.1	-	7	799	c.597_splice	c.e7-1	p.R199_splice	FRMD3_uc004amr.1_Splice_Site_p.R185_splice	NM_174938	NP_777598	A2A2Y4	FRMD3_HUMAN	FERM domain containing 3							cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2						GCTCTGCCCCCTAAAATCACA	0.428													7	114					0.000673444	0.00655963	0.000673444	1	0
GKAP1	80318	broad.mit.edu	37	9	86356937	86356937	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:86356937G>A	uc004amy.2	-	12	1479	c.983C>T	c.(982-984)TCA>TTA	p.S328L	GKAP1_uc004amz.2_Missense_Mutation_p.S277L	NM_025211	NP_079487	Q5VSY0	GKAP1_HUMAN	G kinase anchoring protein 1 isoform a	328	Potential.				signal transduction	Golgi apparatus					0						AGCATGAAGTGAAGTCACCTA	0.299													19	65					0	0	0.00047179	0	0
GKAP1	80318	broad.mit.edu	37	9	86414140	86414140	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:86414140C>A	uc004amy.2	-	4	816	c.320G>T	c.(319-321)CGA>CTA	p.R107L	GKAP1_uc004amz.2_Missense_Mutation_p.R107L|GKAP1_uc011lsu.1_RNA	NM_025211	NP_079487	Q5VSY0	GKAP1_HUMAN	G kinase anchoring protein 1 isoform a	107					signal transduction	Golgi apparatus					0						ATTTTCTTCTCGTGAATCCTT	0.368													6	247					0.000274275	0.00290969	0.000274275	1	0
KIF27	55582	broad.mit.edu	37	9	86503438	86503438	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:86503438C>A	uc004ana.2	-	8	2193	c.2049G>T	c.(2047-2049)CAG>CAT	p.Q683H	KIF27_uc010mpw.2_Missense_Mutation_p.Q683H|KIF27_uc010mpx.2_Missense_Mutation_p.Q683H	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	683					cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						GTGTTTCATCCTGAGTATCAC	0.333													6	65					0.000274275	0.00290969	0.000274275	1	0
RMI1	80010	broad.mit.edu	37	9	86617213	86617213	+	Silent	SNP	T	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:86617213T>C	uc004anq.3	+	3	1720	c.1312T>C	c.(1312-1314)TTA>CTA	p.L438L	RMI1_uc004anr.3_Silent_p.L438L|RMI1_uc004anp.3_Silent_p.L438L|RMI1_uc004ans.3_Silent_p.L438L	NM_024945	NP_079221	Q9H9A7	RMI1_HUMAN	RMI1, RecQ mediated genome instability 1,	438					DNA replication	nucleus					0						TAGCCATTCCttaaataataa	0.279													4	126					0	0	0.00024832	0	0
SLC28A3	64078	broad.mit.edu	37	9	86909137	86909137	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:86909137C>G	uc010mpz.2	-	9	1040	c.915G>C	c.(913-915)CTG>CTC	p.L305L	SLC28A3_uc011lsy.1_Silent_p.L236L|SLC28A3_uc004anu.1_Silent_p.L305L|SLC28A3_uc010mqb.2_Silent_p.L236L	NM_022127	NP_071410	Q9HAS3	S28A3_HUMAN	concentrative Na+-nucleoside cotransporter	305	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|plasma membrane	nucleoside binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|skin(1)	4						GCATCAGTCCCAGGTAGTACA	0.502													4	117					0	0	3.59834e-05	0	0
Unknown	0	broad.mit.edu	37	9	88464478	88464478	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:88464478C>A	uc004aoh.1	+	10	1768	c.665C>A	c.(664-666)CCT>CAT	p.P222H						RecName: Full=Kinesin-like protein KIF27;																		TCATACATTCCTGCTAAGTAT	0.368													10	48					0.000978159	0.00917326	0.000978159	1	0
GOLM1	51280	broad.mit.edu	37	9	88655717	88655717	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:88655717G>T	uc004aol.2	-	6	732	c.534C>A	c.(532-534)ACC>ACA	p.T178T	GOLM1_uc010mqd.1_RNA|GOLM1_uc004aom.2_Silent_p.T178T	NM_016548	NP_057632	Q8NBJ4	GOLM1_HUMAN	golgi membrane protein 1	178	Potential.|Lumenal (Potential).					Golgi apparatus|integral to plasma membrane					0						TCCCCTTTTTGGTGACCTCTT	0.478													7	128					8.12818e-05	0.000938396	8.12818e-05	1	0
OGN	4969	broad.mit.edu	37	9	95152205	95152206	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:95152205_95152206GG>TT	uc004asa.2	-	5	795_796	c.560_561CC>AA	c.(559-561)CCC>CAA	p.P187Q	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|OGN_uc004asb.2_Missense_Mutation_p.P187Q|OGN_uc011ltx.1_Missense_Mutation_p.P205Q	NM_014057	NP_054776	P20774	MIME_HUMAN	osteoglycin preproprotein	187	LRR 4.					extracellular space|proteinaceous extracellular matrix	growth factor activity				0						AAGTGAGCTTGGGAGGAAGAAC	0.307													8	241					0	0	6.4e-05	0	0
ZNF484	83744	broad.mit.edu	37	9	95618560	95618560	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:95618560C>A	uc004asu.1	-	3	205	c.56G>T	c.(55-57)AGG>ATG	p.R19M	ANKRD19_uc004asr.3_Intron|ZNF484_uc011lub.1_Missense_Mutation_p.R21M|ZNF484_uc010mrb.1_Translation_Start_Site|ZNF484_uc004asv.1_Translation_Start_Site	NM_031486	NP_113674	Q5JVG2	ZN484_HUMAN	zinc finger protein 484 isoform a	19	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCACTCATCCCTACTGAAGTC	0.318													8	138					1.06961e-07	1.39386e-06	0.000157383	1	0
CTSL2	1515	broad.mit.edu	37	9	99797110	99797110	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:99797110G>C	uc004awt.2	-	7	1000	c.803C>G	c.(802-804)CCA>CGA	p.P268R	CTSL2_uc010msi.2_Missense_Mutation_p.P268R|CTSL2_uc004awu.2_Missense_Mutation_p.P213R|CTSL2_uc010msj.1_Missense_Mutation_p.P213R	NM_001333	NP_001324	O60911	CATL2_HUMAN	cathepsin L2 preproprotein	268						lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(62;0.0559)				GCTGCAGTCTGGTTCAAAATA	0.478													6	110					0	0	3.59834e-05	0	0
TDRD7	23424	broad.mit.edu	37	9	100249462	100249462	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:100249462G>C	uc004axj.2	+	16	3149	c.2924G>C	c.(2923-2925)AGG>ACG	p.R975T	TDRD7_uc011lux.1_Missense_Mutation_p.R901T|TDRD7_uc011luy.1_Missense_Mutation_p.R295T	NM_014290	NP_055105	Q8NHU6	TDRD7_HUMAN	tudor domain containing 7	975	Interacts with CDK17 (By similarity).|Interacts with CABLES1 (By similarity).				lens fiber cell differentiation|lens morphogenesis in camera-type eye|posttranscriptional regulation of gene expression|spermatogenesis	chromatoid body	mRNA binding			ovary(2)|pancreas(1)	3		Acute lymphoblastic leukemia(62;0.158)				AGGTGGCACAGGGTGCTTTTA	0.353													4	83					0	0	0.00024832	0	0
ANKS6	203286	broad.mit.edu	37	9	101546426	101546426	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:101546426C>G	uc004ayu.2	-	4	942	c.921G>C	c.(919-921)CTG>CTC	p.L307L	ANKS6_uc004ayt.2_Silent_p.L6L|ANKS6_uc004ayx.1_RNA|ANKS6_uc004ayy.1_RNA	NM_173551	NP_775822	Q68DC2	ANKS6_HUMAN	ankyrin repeat and sterile alpha motif domain	307	ANK 8.									ovary(2)	2		Acute lymphoblastic leukemia(62;0.0527)				TCTCTTTGACCAGCTGGAAGT	0.517													3	51					0	0	0.000602214	0	0
INVS	27130	broad.mit.edu	37	9	103035213	103035213	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:103035213G>C	uc004bap.1	+	12	1851	c.1639G>C	c.(1639-1641)GGT>CGT	p.G547R	INVS_uc010mta.1_Missense_Mutation_p.G451R|INVS_uc011lve.1_Missense_Mutation_p.G451R|INVS_uc004bao.1_Missense_Mutation_p.G547R|INVS_uc004baq.1_Missense_Mutation_p.G451R|INVS_uc004bar.1_Missense_Mutation_p.G451R|INVS_uc010mtb.1_Missense_Mutation_p.G221R	NM_014425	NP_055240	Q9Y283	INVS_HUMAN	inversin isoform a	547	ANK 16.				negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|membrane|microtubule|nucleus|spindle	calmodulin binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.056)				GTTGGAGCACGGTGCCCTGTC	0.463													5	210					0	0	0.000602214	0	0
TEX10	54881	broad.mit.edu	37	9	103091524	103091524	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:103091524G>T	uc004bas.2	-	7	1738	c.1523C>A	c.(1522-1524)ACA>AAA	p.T508K	TEX10_uc011lvf.1_Missense_Mutation_p.T347K|TEX10_uc011lvg.1_Missense_Mutation_p.T511K	NM_017746	NP_060216	Q9NXF1	TEX10_HUMAN	testis expressed 10 isoform 1	508						integral to membrane|MLL1 complex|nuclear membrane|nucleolus	binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)		OV - Ovarian serous cystadenocarcinoma(323;0.157)		CTGATATAATGTATAAACTGC	0.363													8	203					0.000978159	0.00917326	0.000978159	1	0
GRIN3A	116443	broad.mit.edu	37	9	104499681	104499681	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:104499681G>A	uc004bbp.1	-	1	1182	c.581C>T	c.(580-582)TCG>TTG	p.S194L	GRIN3A_uc004bbq.1_Missense_Mutation_p.S194L	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	194	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	GAGCAGCGCCGACACCCCTTG	0.592													22	41					0	0	0.000295444	0	0
NIPSNAP3A	25934	broad.mit.edu	37	9	107515275	107515275	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:107515275C>G	uc004bch.1	+	3	465	c.360C>G	c.(358-360)CTC>CTG	p.L120L	NIPSNAP3A_uc011lvt.1_Silent_p.L120L|NIPSNAP3A_uc011lvu.1_Silent_p.L120L	NM_015469	NP_056284	Q9UFN0	NPS3A_HUMAN	nipsnap homolog 3A	120						cytosol					0						ATTTGGCTCTCATTGATAAAC	0.388													4	156					0	0	0.00024832	0	0
ABCA1	19	broad.mit.edu	37	9	107578466	107578466	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:107578466C>G	uc004bcl.2	-	25	4009	c.3696G>C	c.(3694-3696)CTG>CTC	p.L1232L		NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	1232					Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TAGAAATGCCCAGGTCTGAGA	0.483													6	225					0	0	0.000157383	0	0
SLC44A1	23446	broad.mit.edu	37	9	108123571	108123571	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:108123571G>T	uc004bcn.2	+	8	1081	c.860G>T	c.(859-861)CGG>CTG	p.R287L	SLC44A1_uc010mtk.1_Missense_Mutation_p.R287L|SLC44A1_uc004bco.1_Missense_Mutation_p.R79L	NM_080546	NP_536856	Q8WWI5	CTL1_HUMAN	CDW92 antigen	287	Mitochondrial intermembrane (Potential).					integral to membrane|mitochondrial outer membrane|plasma membrane	choline transmembrane transporter activity			breast(3)|ovary(1)	4					Choline(DB00122)	GACAATCTTCGGGCCCTCCTC	0.453													7	174					0.000442599	0.00445669	0.000442599	1	0
RAD23B	5887	broad.mit.edu	37	9	110081063	110081063	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:110081063C>A	uc004bde.2	+	6	951	c.584C>A	c.(583-585)ACT>AAT	p.T195N	RAD23B_uc011lwa.1_Missense_Mutation_p.T195N|RAD23B_uc011lwb.1_Missense_Mutation_p.T174N	NM_002874	NP_002865	P54727	RD23B_HUMAN	UV excision repair protein RAD23 homolog B	195	UBA 1.				nucleotide-excision repair, DNA damage recognition|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|regulation of proteasomal ubiquitin-dependent protein catabolic process	cytoplasm|nucleoplasm|proteasome complex|XPC complex	damaged DNA binding|polyubiquitin binding|single-stranded DNA binding	p.T195I(1)		ovary(1)	1						AATATGGTAACTGAGATCATG	0.383								Direct_reversal_of_damage|NER					6	143					0.000157383	0.00173811	0.000157383	1	0
SVEP1	79987	broad.mit.edu	37	9	113217905	113217905	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:113217905C>G	uc010mtz.2	-	22	4089	c.3752G>C	c.(3751-3753)GGG>GCG	p.G1251A	SVEP1_uc010mua.1_Missense_Mutation_p.G1251A	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1251	EGF-like 2; calcium-binding (Potential).				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AATGAATTCCCCAACTAGGTC	0.413													3	37					0	0	3.59834e-05	0	0
MUSK	4593	broad.mit.edu	37	9	113449410	113449410	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:113449410C>G	uc004bey.2	+	3	318	c.220C>G	c.(220-222)CGG>GGG	p.R74G	MUSK_uc004bex.2_Missense_Mutation_p.R74G	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	74	Ig-like 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						CTTTGACACCCGGTACAGCAT	0.468													4	84					0	0	8.12818e-05	0	0
MUSK	4593	broad.mit.edu	37	9	113510077	113510077	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:113510077G>A	uc004bey.2	+	7	1008	c.910G>A	c.(910-912)GCA>ACA	p.A304T	MUSK_uc004bex.2_Missense_Mutation_p.A314T	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	304	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						CATCAGCATAGCAGGTAGGAT	0.468													5	48					0	0	0.000602214	0	0
KIAA0368	23392	broad.mit.edu	37	9	114137453	114137453	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:114137453C>G	uc004bfe.1	-	39	4584	c.4584G>C	c.(4582-4584)CTG>CTC	p.L1528L		NM_001080398	NP_001073867			KIAA0368 protein												0						CTAGCTCGCCCAGCACTGACA	0.408													4	54					0	0	8.12818e-05	0	0
ROD1	9991	broad.mit.edu	37	9	114989824	114989824	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:114989824G>T	uc004bfw.2	-	13	1502	c.1315C>A	c.(1315-1317)CGA>AGA	p.R439R	ROD1_uc004bfv.2_Silent_p.R445R|ROD1_uc004bfx.2_Silent_p.R442R|ROD1_uc011lwu.1_Silent_p.R411R|ROD1_uc004bfy.2_Silent_p.R344R|ROD1_uc004bfz.2_Silent_p.R411R	NM_005156	NP_005147	O95758	ROD1_HUMAN	ROD1 regulator of differentiation 1 isoform 1	439					anatomical structure morphogenesis|mRNA processing	nucleus	nucleotide binding|RNA binding			skin(1)	1						TGTCCCTCTCGAGGAAGCTGT	0.443													6	81					5.18039e-06	6.44204e-05	0.000157383	1	0
HSDL2	84263	broad.mit.edu	37	9	115167931	115167931	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:115167931C>A	uc004bga.1	+	3	302	c.209C>A	c.(208-210)CCA>CAA	p.P70Q	HSDL2_uc011lwv.1_5'UTR|HSDL2_uc004bgb.1_5'UTR|HSDL2_uc004bgc.1_Missense_Mutation_p.P70Q|HSDL2_uc011lww.1_5'UTR	NM_032303	NP_115679	Q6YN16	HSDL2_HUMAN	hydroxysteroid dehydrogenase like 2	70						peroxisome	oxidoreductase activity|sterol binding				0						AAGGCCTTGCCATGTATTGTT	0.343													9	313					0.000151284	0.00173001	0.000151284	1	0
ZFP37	7539	broad.mit.edu	37	9	115806073	115806073	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:115806073G>C	uc004bgm.1	-	4	853	c.825C>G	c.(823-825)CCC>CCG	p.P275P	ZFP37_uc011lwz.1_Silent_p.P290P|ZFP37_uc011lxa.1_Silent_p.P276P	NM_003408	NP_003399	Q9Y6Q3	ZFP37_HUMAN	zinc finger protein 37 homolog	275						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						AGCTAAGGCTGGGTGATTTCT	0.373													4	129					0	0	0.00024832	0	0
SLC31A2	1318	broad.mit.edu	37	9	115925072	115925072	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:115925072C>G	uc004bgq.2	+	4	424	c.307C>G	c.(307-309)CAG>GAG	p.Q103E		NM_001860	NP_001851	O15432	COPT2_HUMAN	solute carrier family 31 (copper transporters),	103	Helical; (Potential).					integral to plasma membrane	copper ion transmembrane transporter activity				0						CCATGTCATCCAGGTGGTCAT	0.478													4	183					0	0	3.59834e-05	0	0
ALAD	210	broad.mit.edu	37	9	116155812	116155812	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:116155812C>G	uc011lxf.1	-	2	230	c.28G>C	c.(28-30)GGC>CGC	p.G10R	ALAD_uc011lxe.1_Missense_Mutation_p.G10R|ALAD_uc004bhl.3_5'UTR	NM_000031	NP_000022	P13716	HEM2_HUMAN	delta-aminolevulinic acid dehydratase	10					heme biosynthetic process|protein homooligomerization	cytosol	identical protein binding|lead ion binding|porphobilinogen synthase activity|zinc ion binding				0					Aminolevulinic acid(DB00855)	TGGAAGTAGCCGCTGTGCAGA	0.612													3	38					0	0	6.4e-05	0	0
C9orf43	257169	broad.mit.edu	37	9	116176160	116176160	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:116176160C>A	uc004bho.3	+	3	669	c.273C>A	c.(271-273)TCC>TCA	p.S91S	C9orf43_uc004bhp.2_Silent_p.S91S	NM_152786	NP_689999	Q8TAL5	CI043_HUMAN	hypothetical protein LOC257169	91											0						AGTTTTACTCCAAATTTCATG	0.353													7	132					0.000673444	0.00655963	0.000673444	1	0
RGS3	5998	broad.mit.edu	37	9	116299110	116299110	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:116299110C>A	uc004bhq.2	+	20	2158	c.1949C>A	c.(1948-1950)TCG>TAG	p.S650*	RGS3_uc004bhr.2_Nonsense_Mutation_p.S538*|RGS3_uc004bhs.2_Nonsense_Mutation_p.S540*|RGS3_uc004bht.2_Nonsense_Mutation_p.S369*|RGS3_uc010muy.2_Nonsense_Mutation_p.S369*|RGS3_uc004bhu.2_Nonsense_Mutation_p.S276*|RGS3_uc004bhv.2_5'UTR	NM_144488	NP_652759	P49796	RGS3_HUMAN	regulator of G-protein signalling 3 isoform 6	650					inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	cytosol|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3						GAAGCGCACTCGCAGGAGCAG	0.587													7	101					7.48243e-07	9.56199e-06	0.000442599	1	0
COL27A1	85301	broad.mit.edu	37	9	117072884	117072884	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:117072884A>G	uc011lxl.1	+	61	5492	c.5492A>G	c.(5491-5493)CAA>CGA	p.Q1831R	COL27A1_uc004bii.2_RNA|COL27A1_uc011lxn.1_Missense_Mutation_p.Q146R	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	1831	Fibrillar collagen NC1.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						CAAGACCCCCAACAGCTGCCC	0.562													3	59					0	0	6.4e-05	0	0
OR1Q1	158131	broad.mit.edu	37	9	125377554	125377554	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:125377554G>T	uc011lyy.1	+	1	538	c.538G>T	c.(538-540)GAC>TAC	p.D180Y		NM_012364	NP_036496	Q15612	OR1Q1_HUMAN	olfactory receptor, family 1, subfamily Q,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTTCTTCTGTGACCTCTACGC	0.493													7	106					3.09899e-07	4.00456e-06	0.000274275	1	0
RABGAP1	23637	broad.mit.edu	37	9	125758328	125758328	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:125758328C>A	uc011lzh.1	+	7	1066	c.932C>A	c.(931-933)CCC>CAC	p.P311H	RABGAP1_uc004bnl.3_RNA	NM_012197	NP_036329	Q9Y3P9	RBGP1_HUMAN	RAB GTPase activating protein 1	311					cell cycle	centrosome|cytosol|microtubule associated complex	Rab GTPase activator activity|tubulin binding			ovary(3)|kidney(2)	5						AGTGCAGTTCCCAAAGATAAG	0.343													7	138					0.000274275	0.00290969	0.000274275	1	0
MAPKAP1	79109	broad.mit.edu	37	9	128201177	128201177	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:128201177C>G	uc004bpv.2	-	12	1891	c.1558G>C	c.(1558-1560)GGG>CGG	p.G520R	MAPKAP1_uc011lzt.1_Missense_Mutation_p.G323R|MAPKAP1_uc010mwz.2_RNA|MAPKAP1_uc011lzu.1_Missense_Mutation_p.G323R|MAPKAP1_uc011lzv.1_Missense_Mutation_p.G228R|MAPKAP1_uc004bpw.2_Missense_Mutation_p.G328R|MAPKAP1_uc004bpx.2_Missense_Mutation_p.G328R|MAPKAP1_uc004bpy.2_Missense_Mutation_p.G484R|MAPKAP1_uc004bpz.2_Missense_Mutation_p.G473R|MAPKAP1_uc010mxa.2_RNA|MAPKAP1_uc004bpu.2_RNA	NM_001006617	NP_001006618	Q9BPZ7	SIN1_HUMAN	mitogen-activated protein kinase associated	520	Interaction with ATF2.				nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|response to stress|T cell costimulation	cytoplasmic membrane-bounded vesicle|cytosol|nucleus|plasma membrane	Ras GTPase binding			ovary(2)|lung(2)	4						CACTGCTGCCCGGATTTCTTC	0.562													4	117					0	0	3.59834e-05	0	0
STXBP1	6812	broad.mit.edu	37	9	130435469	130435469	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:130435469C>T	uc004brl.2	+	13	1236	c.1039C>T	c.(1039-1041)CAC>TAC	p.H347Y	STXBP1_uc004brk.2_Missense_Mutation_p.H347Y	NM_001032221	NP_001027392	P61764	STXB1_HUMAN	syntaxin binding protein 1 isoform b	347					axon target recognition|energy reserve metabolic process|glutamate secretion|negative regulation of synaptic transmission, GABAergic|neurotransmitter secretion|platelet aggregation|platelet degranulation|protein transport|regulation of insulin secretion|regulation of synaptic vesicle priming|synaptic vesicle maturation|vesicle docking involved in exocytosis	cytosol|mitochondrion|plasma membrane|platelet alpha granule|protein complex	identical protein binding|syntaxin-1 binding|syntaxin-2 binding			skin(1)	1						GTACTCCACCCACCTGCACCT	0.413													4	66					0	0	3.59834e-05	0	0
SPTAN1	6709	broad.mit.edu	37	9	131344084	131344084	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:131344084G>T	uc004bvl.3	+	12	1598	c.1485G>T	c.(1483-1485)TTG>TTT	p.L495F	SPTAN1_uc011mbg.1_Missense_Mutation_p.L495F|SPTAN1_uc011mbh.1_Missense_Mutation_p.L507F|SPTAN1_uc004bvm.3_Missense_Mutation_p.L495F|SPTAN1_uc004bvn.3_Missense_Mutation_p.L495F	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	495	Spectrin 6.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						ATGAAGACTTGGGAGATTCCT	0.423													12	287					0.000422831	0.00445499	0.000422831	1	0
SPTAN1	6709	broad.mit.edu	37	9	131390216	131390216	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:131390216C>G	uc004bvl.3	+	50	6800	c.6687C>G	c.(6685-6687)CTC>CTG	p.L2229L	SPTAN1_uc004bvm.3_Silent_p.L2234L|SPTAN1_uc004bvn.3_Silent_p.L2209L|SPTAN1_uc010mye.1_3'UTR|SPTAN1_uc010myf.1_Silent_p.L58L|SPTAN1_uc004bvo.3_5'Flank	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	2229	Spectrin 23.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						CATACCTCCTCGATGGGTTAA	0.572													4	230					0	0	3.59834e-05	0	0
PKN3	29941	broad.mit.edu	37	9	131477702	131477702	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:131477702A>G	uc004bvw.2	+	15	2164	c.1771A>G	c.(1771-1773)AAG>GAG	p.K591E	PKN3_uc010myh.2_Missense_Mutation_p.K591E|PKN3_uc011mbk.1_Missense_Mutation_p.K141E	NM_013355	NP_037487	Q6P5Z2	PKN3_HUMAN	protein kinase PKNbeta	591	Protein kinase.				signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein binding|protein kinase C activity			stomach(2)|lung(2)	4						CAAAGCACTGAAGAAGCAGGA	0.632													3	63					0	0	0.000602214	0	0
PKN3	29941	broad.mit.edu	37	9	131479099	131479099	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:131479099T>G	uc004bvw.2	+	16	2275	c.1882T>G	c.(1882-1884)TGC>GGC	p.C628G	PKN3_uc010myh.2_Missense_Mutation_p.C628G|PKN3_uc011mbk.1_Missense_Mutation_p.C178G	NM_013355	NP_037487	Q6P5Z2	PKN3_HUMAN	protein kinase PKNbeta	628	Protein kinase.				signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein binding|protein kinase C activity			stomach(2)|lung(2)	4						CCTCCTTGCCTGCTTCCAGAC	0.587													4	114					0	0	0.00024832	0	0
POMT1	10585	broad.mit.edu	37	9	134387518	134387518	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:134387518C>G	uc004cav.2	+	11	1345	c.1143C>G	c.(1141-1143)CCC>CCG	p.P381P	POMT1_uc004cax.2_Silent_p.P359P|POMT1_uc011mcj.1_Silent_p.P137P|POMT1_uc004cau.2_Silent_p.P359P|POMT1_uc004caw.2_Silent_p.P305P|POMT1_uc011mck.1_Silent_p.P242P|POMT1_uc011mcl.1_Silent_p.P207P|POMT1_uc011mcm.1_Silent_p.P329P|POMT1_uc011mcn.1_Silent_p.P84P	NM_007171	NP_009102	Q9Y6A1	POMT1_HUMAN	protein-O-mannosyltransferase 1 isoform a	381	MIR 1.				multicellular organismal development|protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			upper_aerodigestive_tract(1)	1		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.65e-05)|Epithelial(140;0.000259)		TAAAGGATCCCAGGAGGTGAG	0.577													5	53					0	0	0.000157383	0	0
SETX	23064	broad.mit.edu	37	9	135206511	135206511	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:135206511C>G	uc004cbk.2	-	9	1209	c.1026G>C	c.(1024-1026)CCG>CCC	p.P342P	SETX_uc004cbj.2_5'Flank|SETX_uc010mzt.2_5'Flank	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	342					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		AATAGGACTCCGGTTCTAACT	0.343													4	130					0	0	0.00024832	0	0
TTF1	7270	broad.mit.edu	37	9	135271884	135271884	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:135271884G>C	uc004cbl.2	-	5	1844	c.1792C>G	c.(1792-1794)CGG>GGG	p.R598G	TTF1_uc011mcp.1_RNA|TTF1_uc004cbm.2_Missense_Mutation_p.R83G	NM_007344	NP_031370	Q15361	TTF1_HUMAN	transcription termination factor, RNA polymerase	598					negative regulation of DNA replication|regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription	nucleolus|nucleoplasm	DNA binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;4.25e-06)|Epithelial(140;9.09e-05)		TTCCAGGGCCGGGCAATGTTC	0.403													5	67					0	0	3.59834e-05	0	0
TSC1	7248	broad.mit.edu	37	9	135786955	135786955	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:135786955C>G	uc004cca.2	-	10	1148	c.914G>C	c.(913-915)GGG>GCG	p.G305A	TSC1_uc004ccb.3_Missense_Mutation_p.G305A|TSC1_uc011mcq.1_Missense_Mutation_p.G254A|TSC1_uc011mcr.1_Missense_Mutation_p.G184A|TSC1_uc011mcs.1_Missense_Mutation_p.G184A|TSC1_uc004ccc.1_Missense_Mutation_p.G305A|TSC1_uc004ccd.2_Missense_Mutation_p.G305A|TSC1_uc004cce.1_Missense_Mutation_p.G305A	NM_000368	NP_000359	Q92574	TSC1_HUMAN	tuberous sclerosis 1 protein isoform 1	305					activation of Rho GTPase activity|cell cycle arrest|cell-matrix adhesion|insulin receptor signaling pathway|negative regulation of cell proliferation|negative regulation of protein ubiquitination|negative regulation of TOR signaling cascade|negative regulation of translation|positive regulation of focal adhesion assembly|regulation of phosphoprotein phosphatase activity|regulation of stress fiber assembly|rRNA export from nucleus	cell cortex|lamellipodium|membrane|TSC1-TSC2 complex	chaperone binding|protein N-terminus binding	p.?(1)		lung(4)|central_nervous_system(3)|breast(2)|haematopoietic_and_lymphoid_tissue(1)|urinary_tract(1)|skin(1)|ovary(1)|bone(1)	14				OV - Ovarian serous cystadenocarcinoma(145;4.32e-08)|Epithelial(140;2.72e-06)		AGTAGCACACCCTAAAATGGA	0.408			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				4	75					0	0	3.59834e-05	0	0
RALGDS	5900	broad.mit.edu	37	9	135975658	135975658	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:135975658G>C	uc004cco.2	-	17	2586	c.2566C>G	c.(2566-2568)CGG>GGG	p.R856G	RALGDS_uc004cct.1_5'Flank|RALGDS_uc004ccn.2_Missense_Mutation_p.R44G|RALGDS_uc004ccp.2_RNA|RALGDS_uc004ccq.2_Missense_Mutation_p.R844G|RALGDS_uc004ccr.2_Missense_Mutation_p.R855G|RALGDS_uc011mcv.1_Missense_Mutation_p.R827G|RALGDS_uc004ccs.2_Missense_Mutation_p.R801G|RALGDS_uc011mcw.1_Missense_Mutation_p.R927G|RALGDS_uc004ccv.1_3'UTR|RALGDS_uc004ccu.1_3'UTR	NM_006266	NP_006257	Q12967	GNDS_HUMAN	ral guanine nucleotide dissociation stimulator	856	Ras-associating.				nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	Ral guanyl-nucleotide exchange factor activity			large_intestine(1)|lung(1)|ovary(1)	3				OV - Ovarian serous cystadenocarcinoma(145;3.66e-06)|Epithelial(140;2.77e-05)		GACTTACTCCGGTCATCTGAG	0.582			T	CIITA	PMBL|Hodgkin Lymphona|								5	170					0	0	8.12818e-05	0	0
DBH	1621	broad.mit.edu	37	9	136522343	136522343	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:136522343C>G	uc004cel.2	+	11	1723	c.1714C>G	c.(1714-1716)CGC>GGC	p.R572G	uc010nao.1_Missense_Mutation_p.R13P	NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	572	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	CTCAGCCGTCCGCTTCCAGGT	0.632													3	52					0	0	3.59834e-05	0	0
BRD3	8019	broad.mit.edu	37	9	136913219	136913219	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:136913219G>T	uc004cew.2	-	6	1260	c.1072C>A	c.(1072-1074)CTC>ATC	p.L358I	BRD3_uc004cex.2_Missense_Mutation_p.L358I	NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	358	Bromo 2.					nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		ACGGTGCTGAGGTCCATCGGG	0.652			T	NUT|C15orf55	lethal midline carcinoma of young people								5	36					5.18039e-06	6.44204e-05	0.000157383	1	0
KCNT1	57582	broad.mit.edu	37	9	138675872	138675872	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:138675872G>C	uc011mdq.1	+	25	2918	c.2844G>C	c.(2842-2844)AGG>AGC	p.R948S	KCNT1_uc011mdr.1_Missense_Mutation_p.R775S|KCNT1_uc010nbf.2_Missense_Mutation_p.R903S|KCNT1_uc004cgo.1_Missense_Mutation_p.R697S	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	948						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		TCCCACAGAGGGAGCGAGAGA	0.592													3	50					0	0	6.4e-05	0	0
C9orf139	401563	broad.mit.edu	37	9	139929107	139929107	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:139929107C>G	uc004ckp.1	+	3	1688	c.174C>G	c.(172-174)CCC>CCG	p.P58P	FUT7_uc004ckq.2_5'Flank	NM_207511	NP_997394	Q6ZV77	CI139_HUMAN	hypothetical protein LOC401563	58											0	all_cancers(76;0.0893)	Myeloproliferative disorder(178;0.0821)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.99e-05)|Epithelial(140;0.000493)		AACAGACACCCGGCGGCAGTT	0.662													5	102					0	0	0.000157383	0	0
RNF208	727800	broad.mit.edu	37	9	140114995	140114995	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:140114995C>G	uc004clz.1	-	1	781	c.670G>C	c.(670-672)GGG>CGG	p.G224R		NM_031297	NP_112587	Q9H0X6	RN208_HUMAN	ring finger protein 208	224							zinc ion binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		CACTGACCCCCGGATGGGGCC	0.701													3	13					0	0	6.4e-05	0	0
ENTPD8	377841	broad.mit.edu	37	9	140332516	140332516	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:140332516C>G	uc004cmw.2	-	3	331	c.147G>C	c.(145-147)GCG>GCC	p.A49A	C9orf167_uc011mew.1_Intron|ENTPD8_uc004cmx.2_Silent_p.A49A|ENTPD8_uc004cmy.2_Silent_p.A49A	NM_001033113	NP_001028285	Q5MY95	ENTP8_HUMAN	ectonucleoside triphosphate diphosphohydrolase 8	49	Extracellular (Potential).					integral to membrane|plasma membrane	ATP binding			skin(1)	1	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000224)|Epithelial(140;0.000898)		GGGAGGAGCCCGCATCAAACA	0.647													3	33					0	0	0.000602214	0	0
CACNA1B	774	broad.mit.edu	37	9	140870416	140870416	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:140870416A>G	uc004cog.2	+	12	1746	c.1601A>G	c.(1600-1602)TAT>TGT	p.Y534C	CACNA1B_uc011mfd.1_Missense_Mutation_p.Y65C	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	534	Helical; Name=S2 of repeat II; (Potential).|II.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CTGAAGATGTATGGCCTGGGG	0.552													3	38					0	0	6.4e-05	0	0
CACNA1B	774	broad.mit.edu	37	9	140952597	140952597	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:140952597G>C	uc004cog.2	+	28	4348	c.4203G>C	c.(4201-4203)GTG>GTC	p.V1401V	CACNA1B_uc011mfd.1_Silent_p.V931V|CACNA1B_uc004coi.2_Silent_p.V615V	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1401	Helical; Name=S6 of repeat III; (Potential).|III.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	TCTACTTTGTGGTCTTTCCCT	0.532													4	126					0	0	0.00024832	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071420	141071420	+	Missense_Mutation	SNP	G	A	A	rs147421666	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:141071420G>A	uc004com.2	+	4	1084	c.823G>A	c.(823-825)GAC>AAC	p.D275N	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						CTGGTTCCCCGACAACGTAAA	0.512													23	75					0	0	0.000720815	0	0
CSF2RA	1438	broad.mit.edu	37	X	1422828	1422828	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:1422828G>C	uc010nct.2	+	12	1281	c.959G>C	c.(958-960)GGG>GCG	p.G320A	CSF2RA_uc011mhb.1_Missense_Mutation_p.G320A|CSF2RA_uc004cpq.2_Intron|CSF2RA_uc004cpn.2_Missense_Mutation_p.G320A|CSF2RA_uc004cpo.2_Missense_Mutation_p.G320A|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Missense_Mutation_p.G187A|CSF2RA_uc004cpp.2_Intron|CSF2RA_uc010ncv.2_Missense_Mutation_p.G354A|CSF2RA_uc004cpr.2_Intron	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	320	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	TCTGACGACGGGAACCTCGGC	0.413													6	287					0	0	0.000157383	0	0
IL3RA	3563	broad.mit.edu	37	X	1464266	1464266	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:1464266G>C	uc004cps.2	+	3	471	c.122G>C	c.(121-123)TGG>TCG	p.W41S	IL3RA_uc011mhd.1_Intron	NM_002183	NP_002174	P26951	IL3RA_HUMAN	interleukin 3 receptor, alpha precursor	41	Extracellular (Potential).					integral to membrane|plasma membrane	interleukin-3 receptor activity			skin(2)|lung(1)	3		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	CAGTTGACCTGGGACCTTAAC	0.398													6	289					0	0	0.000442599	0	0
ASMT	438	broad.mit.edu	37	X	1755449	1755449	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:1755449G>T	uc004cqd.2	+	9	1051	c.906G>T	c.(904-906)AAG>AAT	p.K302N	ASMT_uc010ncy.2_Missense_Mutation_p.K302N|ASMT_uc004cqe.2_Missense_Mutation_p.K227N	NM_004043	NP_004034	P46597	HIOM_HUMAN	acetylserotonin O-methyltransferase	274					melatonin biosynthetic process|translation	cytosol	acetylserotonin O-methyltransferase activity|S-methyltransferase activity			skin(1)	1		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				ACACTTGCAAGCCAGGTAAGT	0.532													6	245					0.000442599	0.00445669	0.000442599	1	0
MXRA5	25878	broad.mit.edu	37	X	3241350	3241350	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:3241350C>T	uc004crg.3	-	5	2533	c.2376G>A	c.(2374-2376)GGG>GGA	p.G792G		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	792						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGAGATTTTTCCCACGGACTT	0.453													11	127					0	0	0.000673444	0	0
FRMPD4	9758	broad.mit.edu	37	X	12736646	12736646	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:12736646C>G	uc004cuz.1	+	16	4207	c.3701C>G	c.(3700-3702)CCC>CGC	p.P1234R	FRMPD4_uc011mij.1_Missense_Mutation_p.P1226R	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	1234					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						TGTGCCACACCCGTGGAGTCG	0.597													4	179					0	0	0.00024832	0	0
PRPS2	5634	broad.mit.edu	37	X	12840891	12840891	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:12840891C>A	uc004cvb.2	+	7	1057	c.933C>A	c.(931-933)TAC>TAA	p.Y311*	PRPS2_uc004cva.2_Nonsense_Mutation_p.Y314*|PRPS2_uc010nec.2_Nonsense_Mutation_p.Y189*	NM_002765	NP_002756	P11908	PRPS2_HUMAN	phosphoribosyl pyrophosphate synthetase 2	311					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity				0						CCGTGTCCTACCTGTTCAGCC	0.448													5	69					2.7689e-08	3.63906e-07	8.12818e-05	1	0
TLR7	51284	broad.mit.edu	37	X	12903638	12903638	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:12903638C>A	uc004cvc.2	+	3	150	c.11C>A	c.(10-12)CCA>CAA	p.P4Q		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	4					cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	CAGGTGTTTCCAATGTGGACA	0.348													9	248					0.000274275	0.00290969	0.000274275	1	0
MOSPD2	158747	broad.mit.edu	37	X	14930468	14930468	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:14930468C>A	uc004cwi.2	+	10	1065	c.977C>A	c.(976-978)CCC>CAC	p.P326H	MOSPD2_uc004cwj.2_Missense_Mutation_p.P263H	NM_152581	NP_689794	Q8NHP6	MSPD2_HUMAN	motile sperm domain containing 2	326						integral to membrane	structural molecule activity			lung(1)	1	Hepatocellular(33;0.183)					TTTAAAGGCCCCTTACTACAC	0.323													6	83					3.59834e-05	0.000429	3.59834e-05	1	0
PIGA	5277	broad.mit.edu	37	X	15342953	15342953	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:15342953G>T	uc004cwr.2	-	5	1122	c.1022C>A	c.(1021-1023)CCA>CAA	p.P341Q	PIGA_uc010neu.2_Intron|PIGA_uc004cwq.2_Missense_Mutation_p.P26Q|PIGA_uc010nev.2_Missense_Mutation_p.P172Q|PIGA_uc004cws.2_Missense_Mutation_p.P26Q|PIGA_uc011miq.1_Missense_Mutation_p.P107Q	NM_002641	NP_002632	P37287	PIGA_HUMAN	phosphatidylinositol	341	Cytoplasmic (Potential).				C-terminal protein lipidation|positive regulation of metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity|protein binding				0	Hepatocellular(33;0.183)					AAGGTTTTCTGGAAGCACCTC	0.388													8	167					0.000157383	0.00173811	0.000157383	1	0
PIGA	5277	broad.mit.edu	37	X	15344087	15344087	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:15344087G>T	uc004cwr.2	-	3	897	c.797C>A	c.(796-798)CCA>CAA	p.P266Q	PIGA_uc010neu.2_5'Flank|PIGA_uc004cwq.2_5'UTR|PIGA_uc010nev.2_Intron|PIGA_uc004cws.2_5'UTR|PIGA_uc011miq.1_Missense_Mutation_p.P32Q|PIGA_uc010new.1_3'UTR	NM_002641	NP_002632	P37287	PIGA_HUMAN	phosphatidylinositol	266	Cytoplasmic (Potential).				C-terminal protein lipidation|positive regulation of metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity|protein binding				0	Hepatocellular(33;0.183)					GATTCTCTTTGGTCCCTCTCC	0.363													9	279					0.000673444	0.00655963	0.000673444	1	0
PIR	8544	broad.mit.edu	37	X	15408313	15408313	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:15408313G>C	uc004cwu.2	-	9	992	c.754C>G	c.(754-756)CAA>GAA	p.Q252E	PIR_uc004cwv.2_Missense_Mutation_p.Q252E	NM_003662	NP_003653	O00625	PIR_HUMAN	pirin	252					transcription from RNA polymerase II promoter	cytoplasm|nucleus	metal ion binding|protein binding|quercetin 2,3-dioxygenase activity|transcription cofactor activity			ovary(1)	1	Hepatocellular(33;0.183)					TTACCATGTTGGATAACTGGT	0.353													5	112					0	0	0.000602214	0	0
ACE2	59272	broad.mit.edu	37	X	15603685	15603685	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:15603685C>G	uc004cxa.1	-	7	981	c.813G>C	c.(811-813)TGG>TGC	p.W271C	ACE2_uc004cxb.2_Missense_Mutation_p.W271C	NM_021804	NP_068576	Q9BYF1	ACE2_HUMAN	angiotensin I converting enzyme 2 precursor	271	Extracellular (Potential).				angiotensin-mediated drinking behavior|proteolysis|receptor biosynthetic process|regulation of cell proliferation|virion attachment, binding of host cell surface receptor	cell surface|extracellular space|integral to membrane|membrane raft|plasma membrane	carboxypeptidase activity|glycoprotein binding|metallopeptidase activity|peptidyl-dipeptidase activity|viral receptor activity|zinc ion binding			ovary(3)	3	Hepatocellular(33;0.183)				Moexipril(DB00691)	AAAATCTACCCCACATATCAC	0.348													4	175					0	0	0.000157383	0	0
ACE2	59272	broad.mit.edu	37	X	15610443	15610443	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:15610443C>A	uc004cxa.1	-	3	516	c.348G>T	c.(346-348)TTG>TTT	p.L116F	ACE2_uc004cxb.2_Missense_Mutation_p.L116F	NM_021804	NP_068576	Q9BYF1	ACE2_HUMAN	angiotensin I converting enzyme 2 precursor	116	Extracellular (Potential).				angiotensin-mediated drinking behavior|proteolysis|receptor biosynthetic process|regulation of cell proliferation|virion attachment, binding of host cell surface receptor	cell surface|extracellular space|integral to membrane|membrane raft|plasma membrane	carboxypeptidase activity|glycoprotein binding|metallopeptidase activity|peptidyl-dipeptidase activity|viral receptor activity|zinc ion binding			ovary(3)	3	Hepatocellular(33;0.183)				Moexipril(DB00691)	GAATTGTGTTCAACTGCAAAT	0.313													8	171					0.000442599	0.00445669	0.000442599	1	0
TMEM27	57393	broad.mit.edu	37	X	15657865	15657865	+	Missense_Mutation	SNP	C	G	G	rs147033832		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:15657865C>G	uc004cxc.1	-	5	588	c.332G>C	c.(331-333)CGG>CCG	p.R111P		NM_020665	NP_065716	Q9HBJ8	TMM27_HUMAN	transmembrane protein 27 precursor	111	Extracellular (Potential).				proteolysis	integral to membrane	metallopeptidase activity|peptidyl-dipeptidase activity			ovary(1)	1	Hepatocellular(33;0.183)					ATTGTTGATCCGGTTCTTGTT	0.343													6	203					0	0	3.59834e-05	0	0
ZRSR2	8233	broad.mit.edu	37	X	15833823	15833823	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:15833823C>A	uc004cxg.3	+	8	626	c.581C>A	c.(580-582)CCA>CAA	p.P194Q		NM_005089	NP_005080	Q15696	U2AFM_HUMAN	U2 small nuclear RNA auxiliary factor 1-like 2	194	C3H1-type 1.				spliceosome assembly	U12-type spliceosomal complex	nucleotide binding|pre-mRNA 3'-splice site binding|protein binding|zinc ion binding			breast(3)	3	Hepatocellular(33;0.183)					CATAATTTCCCAACATCCAGT	0.398													8	366					0.000673444	0.00655963	0.000673444	1	0
RBBP7	5931	broad.mit.edu	37	X	16875719	16875719	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:16875719G>C	uc004cxt.2	-	5	953	c.595C>G	c.(595-597)CAT>GAT	p.H199D	RBBP7_uc004cxs.1_Missense_Mutation_p.H243D|RBBP7_uc004cxu.2_Missense_Mutation_p.H190D|RBBP7_uc010nez.2_Missense_Mutation_p.H68D	NM_002893	NP_002884	Q16576	RBBP7_HUMAN	retinoblastoma binding protein 7	199	WD 3.				cell proliferation|cellular heat acclimation|CenH3-containing nucleosome assembly at centromere|DNA replication|multicellular organismal development|negative regulation of cell growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex|NuRD complex	protein binding			upper_aerodigestive_tract(1)|ovary(1)	2	Hepatocellular(33;0.0997)					TTTCTCACATGGTCATCAGAT	0.398													4	227					0	0	0.000602214	0	0
NHS	4810	broad.mit.edu	37	X	17749981	17749981	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:17749981C>A	uc004cxx.2	+	8	4628	c.4290C>A	c.(4288-4290)TCC>TCA	p.S1430S	NHS_uc011mix.1_Silent_p.S1451S|NHS_uc004cxy.2_Silent_p.S1274S|NHS_uc004cxz.2_Silent_p.S1253S|NHS_uc004cya.2_Silent_p.S1153S	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	1430						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					CTCAAAGATCCAAGAGGAAAG	0.448													12	283					4.3838e-07	5.65166e-06	0.000151284	1	0
BEND2	139105	broad.mit.edu	37	X	18230761	18230761	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:18230761G>C	uc004cyj.3	-	4	570	c.416C>G	c.(415-417)CCA>CGA	p.P139R	BEND2_uc010nfb.2_Missense_Mutation_p.P139R	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	139										ovary(3)|kidney(1)|central_nervous_system(1)	5						TAAATGTACTGGGTGGTTTAT	0.343													5	172					0	0	0.000157383	0	0
GPR64	10149	broad.mit.edu	37	X	19017170	19017170	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:19017170C>G	uc004cyx.2	-	26	2722	c.2558G>C	c.(2557-2559)TGG>TCG	p.W853S	GPR64_uc004cyy.2_Missense_Mutation_p.W850S|GPR64_uc004cyz.2_Missense_Mutation_p.W839S|GPR64_uc004czb.2_Missense_Mutation_p.W853S|GPR64_uc004czc.2_Missense_Mutation_p.W837S|GPR64_uc004czd.2_Missense_Mutation_p.W829S|GPR64_uc004cze.2_Missense_Mutation_p.W823S|GPR64_uc004czf.2_Missense_Mutation_p.W815S|GPR64_uc004cza.2_Missense_Mutation_p.W831S|GPR64_uc004cyw.2_Missense_Mutation_p.W837S|GPR64_uc010nfj.2_Missense_Mutation_p.W734S	NM_001079858	NP_001073327	Q8IZP9	GPR64_HUMAN	G protein-coupled receptor 64 isoform 1	853	Helical; Name=6; (Potential).				neuropeptide signaling pathway|spermatogenesis	cytoplasm|integral to plasma membrane	G-protein coupled receptor activity				0	Hepatocellular(33;0.183)					AACTGGTCCCCAGGCAAAGAA	0.438													4	237					0	0	0.00024832	0	0
GPR64	10149	broad.mit.edu	37	X	19039227	19039227	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:19039227G>T	uc004cyx.2	-	14	802	c.638C>A	c.(637-639)CCA>CAA	p.P213Q	GPR64_uc004cyy.2_Missense_Mutation_p.P210Q|GPR64_uc004cyz.2_Missense_Mutation_p.P199Q|GPR64_uc004czb.2_Missense_Mutation_p.P213Q|GPR64_uc004czc.2_Missense_Mutation_p.P197Q|GPR64_uc004czd.2_Missense_Mutation_p.P189Q|GPR64_uc004cze.2_Missense_Mutation_p.P183Q|GPR64_uc004czf.2_Missense_Mutation_p.P175Q|GPR64_uc004cza.2_Missense_Mutation_p.P191Q|GPR64_uc004cyw.2_Missense_Mutation_p.P197Q|GPR64_uc010nfj.2_Missense_Mutation_p.P183Q	NM_001079858	NP_001073327	Q8IZP9	GPR64_HUMAN	G protein-coupled receptor 64 isoform 1	213	Extracellular (Potential).				neuropeptide signaling pathway|spermatogenesis	cytoplasm|integral to plasma membrane	G-protein coupled receptor activity				0	Hepatocellular(33;0.183)					CTTACCCATTGGTCGAATCTT	0.284													8	200					0.000978159	0.00917326	0.000978159	1	0
PDHA1	5160	broad.mit.edu	37	X	19373504	19373504	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:19373504G>A	uc004czg.3	+	7	786	c.641G>A	c.(640-642)TGG>TAG	p.W214*	PDHA1_uc004czh.3_Nonsense_Mutation_p.W249*|PDHA1_uc011mjc.1_Nonsense_Mutation_p.W218*|PDHA1_uc011mjd.1_Nonsense_Mutation_p.W180*|PDHA1_uc010nfk.2_Nonsense_Mutation_p.W211*|PDHA1_uc010nfl.2_Nonsense_Mutation_p.W5*	NM_000284	NP_000275	P08559	ODPA_HUMAN	pyruvate dehydrogenase E1 alpha 1 precursor	214					glycolysis|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	protein binding|pyruvate dehydrogenase (acetyl-transferring) activity			ovary(1)	1	Hepatocellular(33;0.183)				NADH(DB00157)	GCAGCTTTGTGGAAATTACCT	0.443													26	197					0	0	0.000491102	0	0
CXorf23	256643	broad.mit.edu	37	X	19971948	19971948	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:19971948G>T	uc004czp.2	-	5	1513	c.1513C>A	c.(1513-1515)CAC>AAC	p.H505N	CXorf23_uc010nfn.2_RNA|CXorf23_uc011mjg.1_Missense_Mutation_p.H70N|CXorf23_uc004czo.2_Missense_Mutation_p.H455N	NM_198279	NP_938020	A2AJT9	CX023_HUMAN	hypothetical protein LOC256643	505						mitochondrion				lung(1)|skin(1)	2						TCTGCCTTGTGTATATCTTGC	0.323													5	163					0.000442599	0.00445669	0.000442599	1	0
RPS6KA3	6197	broad.mit.edu	37	X	20181083	20181084	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:20181083_20181084CG>AT	uc004czu.2	-	19	1839_1840	c.1839_1840CG>AT	c.(1837-1842)ACCGGT>ACATGT	p.G614C	RPS6KA3_uc011mjk.1_Missense_Mutation_p.G584C|RPS6KA3_uc004czv.2_Missense_Mutation_p.G601C|RPS6KA3_uc011mjl.1_Missense_Mutation_p.G585C|RPS6KA3_uc011mjm.1_Missense_Mutation_p.G586C	NM_004586	NP_004577	P51812	KS6A3_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	614	Protein kinase 2.				axon guidance|central nervous system development|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|skeletal system development|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(4)|stomach(1)|ovary(1)|lung(1)|breast(1)	8						TACACTCACCCGGTAAGCATTG	0.332													7	161					0	0	6.4e-05	0	0
MBTPS2	51360	broad.mit.edu	37	X	21886591	21886591	+	Missense_Mutation	SNP	G	T	T	rs122468180		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:21886591G>T	uc004dae.2	+	6	874	c.677G>T	c.(676-678)TGG>TTG	p.W226L	MBTPS2_uc010nfr.2_5'UTR|MBTPS2_uc004dab.2_Missense_Mutation_p.W226L	NM_015884	NP_056968	O43462	MBTP2_HUMAN	membrane-bound transcription factor peptidase,	226			W -> L (in IFAPS; does not affect subcellular localization; impairs activity).		cholesterol metabolic process|proteolysis	Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity			ovary(1)	1						CCAGGTATCTGGCATAATTTT	0.428													20	304					4.16121e-05	0.000492508	0.000375601	1	0
SMS	6611	broad.mit.edu	37	X	21995222	21995222	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:21995222C>T	uc004dag.2	+	5	474	c.373C>T	c.(373-375)CCC>TCC	p.P125S	SMS_uc011mjq.1_Missense_Mutation_p.P29S|SMS_uc004daf.1_Missense_Mutation_p.P72S|SMS_uc010nfs.2_5'Flank|SMS_uc010nft.2_5'Flank	NM_004595	NP_004586	P52788	SPSY_HUMAN	spermine synthase	125					methionine metabolic process|spermine biosynthetic process	cytosol	spermidine synthase activity|spermine synthase activity			ovary(1)	1					Spermine(DB00127)	CAGATACTGGCCCACCGCCGA	0.438													6	115					0	0	0.000157383	0	0
SMS	6611	broad.mit.edu	37	X	21996107	21996107	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:21996107C>G	uc004dag.2	+	6	636	c.535C>G	c.(535-537)CGG>GGG	p.R179G	SMS_uc011mjq.1_Missense_Mutation_p.R83G|SMS_uc004daf.1_Missense_Mutation_p.R126G|SMS_uc010nfs.2_5'Flank|SMS_uc010nft.2_5'Flank	NM_004595	NP_004586	P52788	SPSY_HUMAN	spermine synthase	179					methionine metabolic process|spermine biosynthetic process	cytosol	spermidine synthase activity|spermine synthase activity			ovary(1)	1					Spermine(DB00127)	GGCATATACCCGGGCCATCAT	0.473													4	170					0	0	8.12818e-05	0	0
PRDX4	10549	broad.mit.edu	37	X	23704408	23704408	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:23704408C>G	uc004dam.2	+	7	815	c.772C>G	c.(772-774)CCA>GCA	p.P258A		NM_006406	NP_006397	Q13162	PRDX4_HUMAN	peroxiredoxin 4	258					cell redox homeostasis|I-kappaB phosphorylation		thioredoxin peroxidase activity			upper_aerodigestive_tract(1)	1						ACAGATAATCCCAGATCCAGC	0.333													4	190					0	0	0.000157383	0	0
KLHL15	80311	broad.mit.edu	37	X	24006591	24006591	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:24006591C>T	uc004dba.3	-	4	1518	c.1262G>A	c.(1261-1263)GGG>GAG	p.G421E		NM_030624	NP_085127	Q96M94	KLH15_HUMAN	kelch-like 15	421	Kelch 2.									ovary(1)|breast(1)	2						GAGCACTGTCCCCTCATGTCC	0.428													24	157					0	0	0.000295444	0	0
PDK3	5165	broad.mit.edu	37	X	24549803	24549803	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:24549803C>A	uc004dbg.2	+	10	1222	c.993C>A	c.(991-993)TCC>TCA	p.S331S	PDK3_uc004dbh.2_Silent_p.S331S	NM_005391	NP_005382	Q15120	PDK3_HUMAN	pyruvate dehydrogenase kinase 3 isoform 2	331	Histidine kinase.				glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|protein binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						TGCCAATTTCCCGTCTGTATG	0.363													7	174					0.000442599	0.00445669	0.000442599	1	0
CXorf21	80231	broad.mit.edu	37	X	30578361	30578361	+	Missense_Mutation	SNP	C	A	A	rs141385060		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:30578361C>A	uc004dcg.1	-	3	388	c.112G>T	c.(112-114)GTT>TTT	p.V38F		NM_025159	NP_079435	Q9HAI6	CX021_HUMAN	hypothetical protein LOC80231	38										ovary(1)	1						AGGGTAGCAACAGAATTTGTC	0.453													5	145					0.000274275	0.00290969	0.000274275	1	0
DMD	1756	broad.mit.edu	37	X	31227664	31227664	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:31227664G>T	uc004dda.1	-	65	9758	c.9514C>A	c.(9514-9516)CCT>ACT	p.P3172T	DMD_uc004dcq.1_Missense_Mutation_p.P443T|DMD_uc004dcr.1_Missense_Mutation_p.P712T|DMD_uc004dcs.1_Missense_Mutation_p.P712T|DMD_uc004dct.1_Missense_Mutation_p.P712T|DMD_uc004dcu.1_Missense_Mutation_p.P712T|DMD_uc004dcv.1_Missense_Mutation_p.P712T|DMD_uc004dcw.2_Missense_Mutation_p.P1828T|DMD_uc004dcx.2_Missense_Mutation_p.P1831T|DMD_uc004dcz.2_Missense_Mutation_p.P3049T|DMD_uc004dcy.1_Missense_Mutation_p.P3168T|DMD_uc004ddb.1_Missense_Mutation_p.P3164T|DMD_uc004dcm.1_Missense_Mutation_p.P104T|DMD_uc004dcn.1_Missense_Mutation_p.P104T|DMD_uc004dco.1_Missense_Mutation_p.P104T|DMD_uc004dcp.1_Missense_Mutation_p.P104T|DMD_uc011mkb.1_Missense_Mutation_p.P104T|DMD_uc010ngm.2_Missense_Mutation_p.P104T	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	3172	Interaction with SYNM (By similarity).				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				ACGCAGAGAGGGACGTTGACC	0.458													7	154					0.000673444	0.00655963	0.000673444	1	0
DMD	1756	broad.mit.edu	37	X	31747755	31747756	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:31747755_31747756CG>AT	uc004dda.1	-	52	7896_7897	c.7652_7653CG>AT	c.(7651-7653)ACG>AAT	p.T2551N	DMD_uc004dcr.1_Missense_Mutation_p.T91N|DMD_uc004dcs.1_Missense_Mutation_p.T91N|DMD_uc004dct.1_Missense_Mutation_p.T91N|DMD_uc004dcu.1_Missense_Mutation_p.T91N|DMD_uc004dcv.1_Missense_Mutation_p.T91N|DMD_uc004dcw.2_Missense_Mutation_p.T1207N|DMD_uc004dcx.2_Missense_Mutation_p.T1210N|DMD_uc004dcz.2_Missense_Mutation_p.T2428N|DMD_uc004dcy.1_Missense_Mutation_p.T2547N|DMD_uc004ddb.1_Missense_Mutation_p.T2543N|DMD_uc004ddd.1_Missense_Mutation_p.T91N	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2551	Spectrin 17.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TACTTCGATCCGTAATGATTGT	0.391													6	284					0	0	6.4e-05	0	0
USP9X	8239	broad.mit.edu	37	X	41043305	41043305	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:41043305G>T	uc004dfb.2	+	22	3836	c.3203G>T	c.(3202-3204)GGA>GTA	p.G1068V	USP9X_uc004dfc.2_Missense_Mutation_p.G1068V	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	1068					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						GCCAAACTTGGAGAAAGCAGC	0.368													8	265					0.000978159	0.00917326	0.000978159	1	0
USP9X	8239	broad.mit.edu	37	X	41055568	41055568	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:41055568C>G	uc004dfb.2	+	27	4675	c.4042C>G	c.(4042-4044)CGG>GGG	p.R1348G	USP9X_uc004dfc.2_Missense_Mutation_p.R1348G	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	1348					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						CATGGGACACCGGCCTCTACT	0.353													5	273					0	0	8.12818e-05	0	0
KDM6A	7403	broad.mit.edu	37	X	44966741	44966741	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:44966741G>A	uc004dge.3	+	27	4340	c.3965G>A	c.(3964-3966)CGG>CAG	p.R1322Q	KDM6A_uc011mkz.1_Missense_Mutation_p.R1374Q|KDM6A_uc011mla.1_Missense_Mutation_p.R1277Q|KDM6A_uc011mlb.1_Missense_Mutation_p.R1329Q|KDM6A_uc011mlc.1_Missense_Mutation_p.R1026Q|KDM6A_uc011mld.1_Missense_Mutation_p.R961Q	NM_021140	NP_066963	O15550	KDM6A_HUMAN	ubiquitously transcribed tetratricopeptide	1322					histone H3-K4 methylation		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			kidney(24)|haematopoietic_and_lymphoid_tissue(23)|oesophagus(11)|large_intestine(7)|lung(5)|breast(4)|central_nervous_system(3)|urinary_tract(3)|endometrium(2)|pancreas(2)	84						TGGCATGGGCGGACAAAAGAA	0.413			D|N|F|S		renal|oesophageal SCC|MM								5	121					0	0	0.000274275	0	0
UBA1	7317	broad.mit.edu	37	X	47073812	47073812	+	Silent	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:47073812C>T	uc004dhj.3	+	24	3076	c.2925C>T	c.(2923-2925)TTC>TTT	p.F975F	UBA1_uc004dhk.3_Silent_p.F975F|UBA1_uc004dhm.2_Silent_p.F423F	NM_153280	NP_695012	P22314	UBA1_HUMAN	ubiquitin-activating enzyme E1	975					cell death|protein modification process		ATP binding|ligase activity|protein binding|small protein activating enzyme activity			ovary(1)	1						TCAAACAGTTCCTCGACTATT	0.532													12	83					0	0	0.000978159	0	0
UBA1	7317	broad.mit.edu	37	X	47074246	47074246	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:47074246G>C	uc004dhj.3	+	26	3246	c.3095G>C	c.(3094-3096)CGG>CCG	p.R1032P	UBA1_uc004dhk.3_Missense_Mutation_p.R1032P|UBA1_uc004dhm.2_Missense_Mutation_p.R480P	NM_153280	NP_695012	P22314	UBA1_HUMAN	ubiquitin-activating enzyme E1	1032					cell death|protein modification process		ATP binding|ligase activity|protein binding|small protein activating enzyme activity			ovary(1)	1						CGCCACGTGCGGGCGCTGGTG	0.602													4	81					0	0	0.00024832	0	0
ZNF630	57232	broad.mit.edu	37	X	47918962	47918963	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:47918962_47918963GG>AA	uc004div.3	-	5	1120_1121	c.868_869CC>TT	c.(868-870)CCA>TTA	p.P290L	ZNF630_uc010nhz.1_Intron|ZNF630_uc004diw.2_Missense_Mutation_p.P166L	NM_001037735	NP_001032824	Q2M218	ZN630_HUMAN	zinc finger protein 630	290					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|lung(1)	2						ACATACATATGGTTTCTCTCCA	0.401													17	128					0	0	6.4e-05	0	0
GAGE2A	729447	broad.mit.edu	37	X	49355893	49355893	+	Missense_Mutation	SNP	C	G	G	rs147803166	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:49355893C>G	uc004doi.3	+	3	272	c.175C>G	c.(175-177)CAG>GAG	p.Q59E	GAGE1_uc011mnu.1_Intron|GAGE1_uc004doj.2_Intron	NM_001127212	NP_001120684	Q6NT46	GAG2A_HUMAN	G antigen 2A	59											0	Ovarian(276;0.236)					TCAGGAGGGACAGGATGAGGG	0.443													17	337					0	0	0.000229342	0	0
SSX7	280658	broad.mit.edu	37	X	52681978	52681978	+	Silent	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:52681978G>A	uc004dqx.1	-	3	285	c.126C>T	c.(124-126)TCC>TCT	p.S42S		NM_173358	NP_775494	Q7RTT5	SSX7_HUMAN	synovial sarcoma, X breakpoint 7	42	KRAB-related.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			skin(1)	1	Ovarian(276;0.236)					TTTTCTCCAAGGATTTCATCT	0.378													29	195					0	0	0.000692331	0	0
SPANXN5	494197	broad.mit.edu	37	X	52826360	52826360	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:52826360C>G	uc004drc.1	-	1	29	c.29G>C	c.(28-30)GGG>GCG	p.G10A		NM_001009616	NP_001009616	Q5MJ07	SPXN5_HUMAN	SPANX family, member N5	10											0	Ovarian(276;0.236)					CCTCTTCTCCCCATTGGTGCT	0.348													4	160					0	0	0.000157383	0	0
HUWE1	10075	broad.mit.edu	37	X	53652212	53652212	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:53652212C>G	uc004dsp.2	-	18	1899	c.1497G>C	c.(1495-1497)CAG>CAC	p.Q499H		NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	499					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						GTGGAATACACTGGACTCCTG	0.393													4	242					0	0	0.000157383	0	0
WNK3	65267	broad.mit.edu	37	X	54259282	54259282	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:54259282G>C	uc004dtd.1	-	21	5098	c.4659C>G	c.(4657-4659)CCC>CCG	p.P1553P	WNK3_uc004dtc.1_Silent_p.P1600P	NM_001002838	NP_001002838	Q9BYP7	WNK3_HUMAN	WNK lysine deficient protein kinase 3 isoform 2	1553					intracellular protein kinase cascade|positive regulation of establishment of protein localization in plasma membrane|positive regulation of peptidyl-threonine phosphorylation|positive regulation of rubidium ion transmembrane transporter activity|positive regulation of rubidium ion transport|positive regulation of sodium ion transmembrane transporter activity|positive regulation of sodium ion transport|protein autophosphorylation	adherens junction|tight junction	ATP binding|protein binding|protein serine/threonine kinase activity|rubidium ion transmembrane transporter activity|sodium ion transmembrane transporter activity			lung(4)|ovary(3)|kidney(2)|central_nervous_system(2)	11						TCAAGGACTGGGGGCGGCTTC	0.378													5	190					0	0	8.12818e-05	0	0
ITIH5L	347365	broad.mit.edu	37	X	54783527	54783527	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:54783527G>A	uc004dtj.2	-	8	3010	c.2980C>T	c.(2980-2982)CCT>TCT	p.P994S		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	994	Pro-rich.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						ATGGCCTCAGGGAGGATGCTA	0.542													5	79					0	0	0.000602214	0	0
ZXDA	7789	broad.mit.edu	37	X	57935097	57935097	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:57935097G>T	uc004dve.2	-	1	1971	c.1758C>A	c.(1756-1758)CCC>CCA	p.P586P		NM_007156	NP_009087	P98168	ZXDA_HUMAN	zinc finger, X-linked, duplicated A	586	Required for transcriptional activation.				positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						GTTCACTGCTGGGTGTAAGAG	0.473													8	203					0.000157383	0.00173811	0.000157383	1	0
FAM123B	139285	broad.mit.edu	37	X	63411447	63411447	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:63411447G>A	uc004dvo.2	-	2	1993	c.1720C>T	c.(1720-1722)CGG>TGG	p.R574W		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	574					Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						TGCTCCCGCCGAAGCTCCCAA	0.592													6	82					0	0	3.59834e-05	0	0
FAM123B	139285	broad.mit.edu	37	X	63413106	63413106	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:63413106G>C	uc004dvo.2	-	2	334	c.61C>G	c.(61-63)CGT>GGT	p.R21G		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	21					Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						GTTTGTTCACGGGTACTCCCA	0.552													4	150					0	0	0.00024832	0	0
AR	367	broad.mit.edu	37	X	66863242	66863242	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:66863242C>G	uc004dwu.1	+	2	2876	c.1761C>G	c.(1759-1761)GCC>GCG	p.A587A	AR_uc011mpd.1_Silent_p.A587A|AR_uc011mpe.1_RNA|AR_uc011mpf.1_Silent_p.A587A|AR_uc004dwv.1_Silent_p.A55A	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	586	Interaction with HIPK3 (By similarity).|Nuclear receptor.		A -> V (in prostate cancer; somatic mutation).		cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	TCAAAAGAGCCGCTGAAGGTA	0.488									Androgen_Insensitivity_Syndrome				3	27					0	0	0.00024832	0	0
EDA	1896	broad.mit.edu	37	X	69253280	69253280	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:69253280C>G	uc004dxs.2	+	7	1068	c.826C>G	c.(826-828)CGC>GGC	p.R276G	EDA_uc004dxr.2_Missense_Mutation_p.R276G|EDA_uc011mpj.1_Missense_Mutation_p.R273G	NM_001399	NP_001390	Q92838	EDA_HUMAN	ectodysplasin A isoform EDA-A1	276	Extracellular (Potential).				cell differentiation|ectoderm development|immune response|positive regulation of NF-kappaB transcription factor activity|signal transduction	collagen|cytoskeleton|membrane fraction	tumor necrosis factor receptor binding			ovary(2)|large_intestine(1)	3						TGACTGGTCTCGCATCACTAT	0.483											OREG0019847	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	195					0	0	8.12818e-05	0	0
RAB41	347517	broad.mit.edu	37	X	69504151	69504151	+	Silent	SNP	A	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:69504151A>G	uc004dyc.2	+	7	585	c.585A>G	c.(583-585)ACA>ACG	p.T195T	RAB41_uc010nkv.2_Silent_p.T184T	NM_001032726	NP_001027898	Q5JT25	RAB41_HUMAN	RAB41, member RAS oncogene family	195					protein transport|small GTPase mediated signal transduction		GTP binding			ovary(2)|breast(2)	4						TTCTTTCCACAAGGACTTCAC	0.458													5	129					0	0	3.59834e-05	0	0
PDZD11	51248	broad.mit.edu	37	X	69507681	69507681	+	Splice_Site	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:69507681C>G	uc004dyd.1	-	5	331	c.229_splice	c.e5-1	p.V77_splice	KIF4A_uc004dyg.2_5'Flank|KIF4A_uc010nkw.2_5'Flank|PDZD11_uc004dye.1_Splice_Site_p.V109_splice|KIF4A_uc004dyf.1_5'Flank	NM_016484	NP_057568	Q5EBL8	PDZ11_HUMAN	PDZ domain containing 11							basolateral plasma membrane|cytosol|extracellular region	protein C-terminus binding				0						CAGGAATCACCTGTTGGTAAA	0.423													4	164					0	0	0.000157383	0	0
SNX12	29934	broad.mit.edu	37	X	70281765	70281765	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:70281765C>G	uc004dyr.1	-	3	389	c.314G>C	c.(313-315)CGA>CCA	p.R105P	SNX12_uc004dyp.1_RNA|uc004dyq.2_5'Flank	NM_013346	NP_037478	Q9UMY4	SNX12_HUMAN	sorting nexin 12	105	PX.				cell communication|protein transport	membrane	phosphatidylinositol binding|protein binding				0	Renal(35;0.156)					TTCATCTCCTCGGAAAGGGAG	0.522													4	83					0	0	0.00024832	0	0
HDAC8	55869	broad.mit.edu	37	X	71681864	71681864	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:71681864G>T	uc004eau.2	-	9	1037	c.995C>A	c.(994-996)CCA>CAA	p.P332Q	HDAC8_uc011mqe.1_Missense_Mutation_p.P189Q|HDAC8_uc011mqf.1_Missense_Mutation_p.P137Q|HDAC8_uc011mqg.1_Missense_Mutation_p.P241Q	NM_018486	NP_060956	Q9BY41	HDAC8_HUMAN	histone deacetylase 8	332					chromatin assembly or disassembly|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|nuclear chromosome	histone deacetylase activity (H3-K16 specific)|metal ion binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription factor binding				0	Renal(35;0.156)				Vorinostat(DB02546)	CTCATGATCTGGGATCTCAGA	0.478													5	48					0.000274275	0.00290969	0.000274275	1	0
XIST	7503	broad.mit.edu	37	X	73064054	73064054	+	RNA	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:73064054G>C	uc004ebm.1	-	1		c.8535C>G				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GCAAATGGAGGGTGAGAAGGT	0.408													6	192					0	0	3.59834e-05	0	0
XIST	7503	broad.mit.edu	37	X	73064955	73064955	+	RNA	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:73064955C>G	uc004ebm.1	-	1		c.7634G>C				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CATTTATGTCCAAGGTGCATG	0.478													4	205					0	0	8.12818e-05	0	0
ABCB7	22	broad.mit.edu	37	X	74288867	74288867	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:74288867C>T	uc004eca.2	-	12	1659	c.1634G>A	c.(1633-1635)CGG>CAG	p.R545Q	ABCB7_uc004ebz.2_Missense_Mutation_p.R546Q|ABCB7_uc011mqn.1_Missense_Mutation_p.R519Q|ABCB7_uc010nls.2_Missense_Mutation_p.R506Q|ABCB7_uc010nlt.2_Missense_Mutation_p.R505Q	NM_004299	NP_004290	O75027	ABCB7_HUMAN	ATP-binding cassette, sub-family B, member 7	545	ABC transporter.				cellular iron ion homeostasis	integral to membrane|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|heme transporter activity			ovary(1)	1						CACTGCCCTCCGAAGGCTTTC	0.393													6	164					0	0	0.000157383	0	0
ATRX	546	broad.mit.edu	37	X	76776901	76776901	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:76776901C>A	uc004ecp.3	-	33	7283	c.7051G>T	c.(7051-7053)GAG>TAG	p.E2351*	ATRX_uc004ecq.3_Nonsense_Mutation_p.E2313*|ATRX_uc004eco.3_Nonsense_Mutation_p.E2136*	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	2351					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding	p.E2351fs*3(1)		haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	ATTATATCCTCAAGAGGTTGA	0.363			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						6	113					0.000978159	0.00917326	0.000978159	1	0
ATRX	546	broad.mit.edu	37	X	76814195	76814195	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:76814195C>A	uc004ecp.3	-	29	6681	c.6449G>T	c.(6448-6450)AGA>ATA	p.R2150I	ATRX_uc004ecq.3_Missense_Mutation_p.R2112I|ATRX_uc004eco.3_Missense_Mutation_p.R1935I	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	2150	Helicase C-terminal.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	GCGATAAACTCTGAATATACT	0.343			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						7	152					0.000442599	0.00445669	0.000442599	1	0
ATRX	546	broad.mit.edu	37	X	76937733	76937733	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:76937733C>G	uc004ecp.3	-	9	3247	c.3015G>C	c.(3013-3015)ATG>ATC	p.M1005I	ATRX_uc004ecq.3_Missense_Mutation_p.M967I|ATRX_uc004eco.3_Missense_Mutation_p.M790I|ATRX_uc004ecr.2_Missense_Mutation_p.M937I|ATRX_uc010nlx.1_Missense_Mutation_p.M976I|ATRX_uc010nly.1_Missense_Mutation_p.M950I	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1005					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	ACTGTTGTTCCATTTTAATTA	0.333			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						5	250					0	0	8.12818e-05	0	0
ATP7A	538	broad.mit.edu	37	X	77298914	77298914	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:77298914G>T	uc004ecx.3	+	21	4265	c.4105G>T	c.(4105-4107)GGA>TGA	p.G1369*		NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	1369	Helical; (Potential).		G -> R (in MNKD).		ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						TAATCTGGTTGGAATTCCCAT	0.363													9	234					5.50884e-06	6.81381e-05	0.00010058	1	0
PGK1	5230	broad.mit.edu	37	X	77369513	77369513	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:77369513G>C	uc004ecz.3	+	4	445	c.273G>C	c.(271-273)AAG>AAC	p.K91N	PGK1_uc010nlz.2_RNA|PGK1_uc011mqq.1_Missense_Mutation_p.K63N	NM_000291	NP_000282	P00558	PGK1_HUMAN	phosphoglycerate kinase 1	91					gluconeogenesis|glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			upper_aerodigestive_tract(1)|ovary(1)	2						CTCTTCTCAGGGATGTTCTGT	0.507													4	250					0	0	0.000157383	0	0
PGK1	5230	broad.mit.edu	37	X	77381286	77381286	+	Splice_Site	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:77381286G>C	uc004ecz.3	+	11	1386	c.1214_splice	c.e11-1	p.G405_splice	PGK1_uc010nlz.2_Splice_Site|PGK1_uc011mqq.1_Splice_Site_p.G377_splice	NM_000291	NP_000282	P00558	PGK1_HUMAN	phosphoglycerate kinase 1						gluconeogenesis|glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			upper_aerodigestive_tract(1)|ovary(1)	2						CTCAAAAACAGGTAAAGTCCT	0.438													5	283					0	0	8.12818e-05	0	0
SH3BGRL	6451	broad.mit.edu	37	X	80533896	80533896	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:80533896C>G	uc004eef.2	+	3	695	c.298C>G	c.(298-300)CCA>GCA	p.P100A	SH3BGRL_uc011mqs.1_RNA|SH3BGRL_uc010nml.2_RNA|SH3BGRL_uc010nmm.2_Missense_Mutation_p.P137A|SH3BGRL_uc010nmn.2_Missense_Mutation_p.P137A	NM_003022	NP_003013	O75368	SH3L1_HUMAN	SH3 domain binding glutamic acid-rich protein	100						cytoplasm|nucleus	SH3 domain binding|SH3/SH2 adaptor activity			ovary(1)	1		all_lung(315;5.94e-05)				CTTGACAGCCCCACCTGGTTC	0.343													3	46					0	0	3.59834e-05	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83352841	83352841	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:83352841C>G	uc004eej.1	-	19	1869	c.1792G>C	c.(1792-1794)GGA>CGA	p.G598R	RPS6KA6_uc011mqt.1_Missense_Mutation_p.G598R|RPS6KA6_uc011mqu.1_Missense_Mutation_p.G495R	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	598	Protein kinase 2.				axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						GCATCATATCCCTGTTGCATA	0.313													5	212					0	0	0.000157383	0	0
TGIF2LX	90316	broad.mit.edu	37	X	89177130	89177130	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:89177130G>A	uc004efe.2	+	2	95	c.46G>A	c.(46-48)GAA>AAA	p.E16K		NM_138960	NP_620410	Q8IUE1	TF2LX_HUMAN	TGFB-induced factor homeobox 2-like, X-linked	16						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						AAGCCCGGTGGAAAAAGACAG	0.527													13	98					0	0	0.000219431	0	0
DIAPH2	1730	broad.mit.edu	37	X	96185813	96185813	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:96185813C>G	uc004efu.3	+	10	1456	c.1060C>G	c.(1060-1062)CTC>GTC	p.L354V	DIAPH2_uc004eft.3_Missense_Mutation_p.L354V|DIAPH2_uc004efs.2_Missense_Mutation_p.L361V	NM_006729	NP_006720	O60879	DIAP2_HUMAN	diaphanous 2 isoform 156	354	GBD/FH3.				cell differentiation|cytokinesis|multicellular organismal development|oogenesis	cytosol|early endosome|Golgi apparatus|mitochondrion|nucleolus	receptor binding|Rho GTPase binding			ovary(3)|lung(1)	4						GAATGAATTCCTCCGTTCAGG	0.328													4	99					0	0	0.00024832	0	0
SRPX2	27286	broad.mit.edu	37	X	99917209	99917209	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:99917209G>C	uc004egb.2	+	4	680	c.200G>C	c.(199-201)GGA>GCA	p.G67A		NM_014467	NP_055282	O60687	SRPX2_HUMAN	sushi-repeat-containing protein, X-linked 2	67					angiogenesis|cell motility|cell-cell adhesion|positive regulation of cell migration involved in sprouting angiogenesis|regulation of phosphorylation	cytoplasm|extracellular region	receptor binding			ovary(2)	2						ATCCAGGATGGAGAAGCCACA	0.418													4	125					0	0	0.00024832	0	0
ARL13A	392509	broad.mit.edu	37	X	100229165	100229165	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:100229165C>T	uc004ego.2	+	3	225	c.109C>T	c.(109-111)CTT>TTT	p.L37F	ARL13A_uc011mrf.1_Missense_Mutation_p.L37F|ARL13A_uc010nng.2_Missense_Mutation_p.L37F	NM_001012990	NP_001013008	Q5H913	AR13A_HUMAN	ADP-ribosylation factor-like 13 isoform a	37							GTP binding			ovary(1)	1						CAAAACTGTTCTTGTGGAGGC	0.413													8	29					0	0	0.000978159	0	0
DRP2	1821	broad.mit.edu	37	X	100497447	100497447	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:100497447G>A	uc004egz.2	+	8	1331	c.962G>A	c.(961-963)TGG>TAG	p.W321*	DRP2_uc011mrh.1_Nonsense_Mutation_p.W243*	NM_001939	NP_001930	Q13474	DRP2_HUMAN	dystrophin related protein 2	321	Spectrin 2.				central nervous system development	cytoplasm|cytoskeleton	zinc ion binding			ovary(2)	2						AACGTCCGATGGAAACAACTA	0.498													5	134					0	0	0.000602214	0	0
BTK	695	broad.mit.edu	37	X	100609628	100609629	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:100609628_100609629CG>AT	uc004ehg.2	-	16	1813_1814	c.1620_1621CG>AT	c.(1618-1623)TTCGGC>TTATGC	p.540_541FG>LC	BTK_uc004ehf.2_Missense_Mutation_p.40_41FG>LC|BTK_uc010nnh.2_Intron|BTK_uc010nni.2_Intron|BTK_uc004ehe.2_RNA|BTK_uc010nnj.2_Intron|BTK_uc010nnk.2_Intron|BTK_uc010nnl.2_Intron|BTK_uc010nnm.2_Missense_Mutation_p.110_111FG>LC|BTK_uc010nnn.2_Missense_Mutation_p.364_365FG>LC|BTK_uc010nno.2_Missense_Mutation_p.574_575FG>LC|BTK_uc004ehh.1_RNA	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	540_541	Protein kinase.				calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding			lung(3)|central_nervous_system(2)|ovary(1)	6						CTGGACAGGCCGAAATCAGATA	0.45									Agammaglobulinemia_X-linked				6	312					0	0	6.4e-05	0	0
NXF4	55999	broad.mit.edu	37	X	101818151	101818151	+	RNA	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:101818151G>T	uc004ejf.1	+	7		c.741G>T				NR_002216				Homo sapiens cDNA FLJ42710 fis, clone BRAMY3007609, moderately similar to Homo sapiens nuclear RNA export factor 2 (NXF2).												0						CTGAACAAATGATATGATGTC	0.537													7	171					0.000673444	0.00655963	0.000673444	1	0
ARMCX5	64860	broad.mit.edu	37	X	101858161	101858161	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:101858161C>A	uc004ejg.2	+	6	1973	c.1092C>A	c.(1090-1092)CCC>CCA	p.P364P	ARMCX5_uc004ejh.2_Silent_p.P364P	NM_022838	NP_073749	Q6P1M9	ARMX5_HUMAN	armadillo repeat containing, X-linked 5	364							binding			ovary(1)	1						TCAATAATCCCAATGTTAAAG	0.368													9	225					4.3838e-07	5.65166e-06	0.000151284	1	0
BEX1	55859	broad.mit.edu	37	X	102318183	102318184	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:102318183_102318184CG>AT	uc004ejt.1	-	3	259_260	c.19_20CG>AT	c.(19-21)CGA>ATA	p.R7I		NM_018476	NP_060946	Q9HBH7	BEX1_HUMAN	brain expressed, X-linked 1	7				R -> L (in Ref. 1; AAG09752).	cell differentiation|nervous system development	cytoplasm|nucleus				ovary(1)	1						GTTTACTGCTCGTTTCTCTTTG	0.495													6	288					0	0	6.4e-05	0	0
NXF3	56000	broad.mit.edu	37	X	102337934	102337934	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:102337934G>C	uc004eju.2	-	7	760	c.689C>G	c.(688-690)CCA>CGA	p.P230R	NXF3_uc010noi.1_Missense_Mutation_p.P80R|NXF3_uc011mrw.1_Missense_Mutation_p.P230R|NXF3_uc011mrx.1_Missense_Mutation_p.P141R	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	230						cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						AGCCATACCTGGGTAAAATGG	0.498													6	287					0	0	0.000673444	0	0
GLRA4	441509	broad.mit.edu	37	X	102974002	102974002	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:102974002G>T	uc011mse.1	-	7	1337	c.916C>A	c.(916-918)CGG>AGG	p.R306R	GLRA4_uc010nou.2_Silent_p.R306R	NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	306	Cytoplasmic (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						AAAGAGGCCCGGGAGCCAGAG	0.577													5	125					0.000274275	0.00290969	0.000274275	1	0
TEX13A	56157	broad.mit.edu	37	X	104463736	104463736	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:104463736C>G	uc004ema.2	-	5	1252	c.1140G>C	c.(1138-1140)TGG>TGC	p.W380C	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_3'UTR	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	380	RanBP2-type.					intracellular	zinc ion binding			ovary(2)	2						AAGGGCAGTCCCAGTCCCCTG	0.527													4	205					0	0	3.59834e-05	0	0
RNF128	79589	broad.mit.edu	37	X	106033472	106033472	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:106033472C>G	uc004eml.2	+	5	1194	c.944C>G	c.(943-945)CCC>CGC	p.P315R	RNF128_uc004emk.2_Missense_Mutation_p.P289R	NM_194463	NP_919445	Q8TEB7	RN128_HUMAN	ring finger protein 128 isoform 1	315	RING-type; atypical.					endomembrane system|integral to membrane|perinuclear region of cytoplasm	zinc ion binding			ovary(1)|central_nervous_system(1)	2						AGGACTTGCCCCATGTGCAAA	0.348													5	115					0	0	0.000157383	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106096832	106096832	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:106096832C>A	uc004emo.2	+	13	2370	c.2205C>A	c.(2203-2205)ACC>ACA	p.T735T	MORC4_uc004emp.3_Intron	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	735						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						ATGAAAAAACCAGTCATACTA	0.308													9	241					0.000978159	0.00917326	0.000978159	1	0
NUP62CL	54830	broad.mit.edu	37	X	106418328	106418328	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:106418328C>A	uc004ena.2	-	3	308	c.49G>T	c.(49-51)GGG>TGG	p.G17W	NUP62CL_uc004enb.2_RNA	NM_017681	NP_060151	Q9H1M0	N62CL_HUMAN	nucleoporin 62kDa C-terminal like	17	Thr-rich.				protein transport	nuclear pore	structural constituent of nuclear pore				0						CATGAGAGCCCAATAGCAGCA	0.423													13	305					0.000308642	0.00326428	0.000308642	1	0
PRPS1	5631	broad.mit.edu	37	X	106885595	106885595	+	Splice_Site	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:106885595G>T	uc004ene.3	+	4	611	c.406_splice	c.e4-1	p.G136_splice	PRPS1_uc010npg.2_Splice_Site_p.G103_splice|PRPS1_uc011msj.1_Intron	NM_002764	NP_002755	P60891	PRPS1_HUMAN	phosphoribosyl pyrophosphate synthetase 1						5-phosphoribose 1-diphosphate biosynthetic process|hypoxanthine biosynthetic process|nervous system development|nucleoside metabolic process|purine nucleotide biosynthetic process|pyrimidine nucleotide biosynthetic process|ribonucleoside monophosphate biosynthetic process|urate biosynthetic process	cytosol	ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			breast(3)|large_intestine(1)	4						TCTTTCTACAGGGCTTTTTTG	0.408													7	131					0.000442599	0.00445669	0.000442599	1	0
MID2	11043	broad.mit.edu	37	X	107160864	107160864	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:107160864C>G	uc004enl.2	+	7	1903	c.1330C>G	c.(1330-1332)CAG>GAG	p.Q444E	MID2_uc004enk.2_Missense_Mutation_p.Q444E	NM_012216	NP_036348	Q9UJV3	TRIM1_HUMAN	midline 2 isoform 1	444	Fibronectin type-III.					centrosome|microtubule	ligase activity|zinc ion binding			ovary(1)	1						ATTCACTGGCCAGGCTAACTT	0.507													4	167					0	0	0.000157383	0	0
COL4A5	1287	broad.mit.edu	37	X	107814669	107814669	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:107814669C>G	uc004enz.1	+	7	613	c.411C>G	c.(409-411)CCC>CCG	p.P137P	COL4A5_uc011mso.1_Silent_p.P137P	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	137	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						CAGGCAGTCCCGGTTTTCCTG	0.393									Alport_syndrome_with_Diffuse_Leiomyomatosis				4	214					0	0	3.59834e-05	0	0
COL4A5	1287	broad.mit.edu	37	X	107936108	107936108	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:107936108G>T	uc004enz.1	+	49	4861	c.4659G>T	c.(4657-4659)ATG>ATT	p.M1553I	COL4A5_uc011mso.1_Missense_Mutation_p.M1550I|COL4A5_uc011msp.1_Missense_Mutation_p.M229I	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1547	Collagen IV NC1.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						CCATGCCAATGAGCATGCAAC	0.443									Alport_syndrome_with_Diffuse_Leiomyomatosis				7	81					0.000673444	0.00655963	0.000673444	1	0
IRS4	8471	broad.mit.edu	37	X	107975913	107975913	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:107975913C>G	uc004eoc.2	-	1	3695	c.3662G>C	c.(3661-3663)CGG>CCG	p.R1221P		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	1221						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						TCTTGGCACCCGGCGACTGCG	0.592													7	211					0	0	0.000151284	0	0
IRS4	8471	broad.mit.edu	37	X	107977625	107977625	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:107977625C>G	uc004eoc.2	-	1	1983	c.1950G>C	c.(1948-1950)GGG>GGC	p.G650G		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	650						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						TGAATCTTCCCCCAGACTTCC	0.498													5	423					0	0	0.000157383	0	0
CHRDL1	91851	broad.mit.edu	37	X	109931983	109931983	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:109931983G>C	uc004eou.3	-	9	1176	c.827C>G	c.(826-828)CCA>CGA	p.P276R	CHRDL1_uc004eov.2_Missense_Mutation_p.P270R|CHRDL1_uc004eow.2_Missense_Mutation_p.P275R|CHRDL1_uc010nps.2_Missense_Mutation_p.P275R|CHRDL1_uc004eot.2_Missense_Mutation_p.P196R|CHRDL1_uc011mss.1_Missense_Mutation_p.P190R	NM_001143981	NP_001137453	Q9BU40	CRDL1_HUMAN	chordin-like 1 isoform 1 precursor	269	VWFC 3.				BMP signaling pathway|cell differentiation|nervous system development|ossification	extracellular region					0						CCGGAGGTTTGGGTGCCAGGA	0.453													4	184					0	0	0.000602214	0	0
CAPN6	827	broad.mit.edu	37	X	110491199	110491199	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:110491199G>T	uc004epc.1	-	11	1674	c.1506C>A	c.(1504-1506)CCC>CCA	p.P502P	CAPN6_uc011msu.1_Silent_p.P247P	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	502					microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						AGGACATTTTGGGCATGTCCA	0.423													9	274					5.50884e-06	6.81381e-05	0.00010058	1	0
DCX	1641	broad.mit.edu	37	X	110654011	110654011	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:110654011C>A	uc004epd.2	-	1	364	c.192G>T	c.(190-192)CCG>CCT	p.P64P	DCX_uc011msv.1_Silent_p.P64P|DCX_uc004epe.2_Intron|DCX_uc004epf.2_Intron|DCX_uc004epg.2_Intron	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	64					axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						ATTGGAACTTCGGGCTAAATA	0.433													6	177					3.09899e-07	4.00456e-06	0.000274275	1	0
TRPC5	7224	broad.mit.edu	37	X	111078243	111078244	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:111078243_111078244CC>AA	uc004epl.1	-	7	2720_2721	c.1801_1802GG>TT	c.(1801-1803)GGA>TTA	p.G601L	TRPC5_uc004epm.1_Missense_Mutation_p.G601L	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	601	Extracellular (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						CATGGTAGCTCCTACAAACTCG	0.431													13	289					0	0	6.4e-05	0	0
AMOT	154796	broad.mit.edu	37	X	112053139	112053139	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:112053139G>A	uc004epr.2	-	4	1613	c.1613C>T	c.(1612-1614)TCG>TTG	p.S538L	AMOT_uc004eps.2_Missense_Mutation_p.S129L|AMOT_uc004ept.1_Missense_Mutation_p.S538L	NM_001113490	NP_001106962	Q4VCS5	AMOT_HUMAN	angiomotin isoform 1	538	Potential.				actin cytoskeleton organization|cell-cell junction assembly|negative regulation of angiogenesis|negative regulation of vascular permeability|positive regulation of blood vessel endothelial cell migration|positive regulation of cell size|positive regulation of stress fiber assembly|regulation of cell migration	actin filament|cell surface|cytoplasm|endocytic vesicle|external side of plasma membrane|integral to membrane|lamellipodium|ruffle|stress fiber|tight junction|tight junction	angiostatin binding|protein binding|receptor activity			ovary(1)	1						AAAGAGCTGCGAGATGGTTTT	0.458													45	195					0	0	0.000781405	0	0
HTR2C	3358	broad.mit.edu	37	X	113965724	113965724	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:113965724G>T	uc004epu.1	+	4	785	c.57G>T	c.(55-57)TTG>TTT	p.L19F	HTR2C_uc010nqc.1_Missense_Mutation_p.L19F|HTR2C_uc004epv.1_Missense_Mutation_p.L19F	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	19	Extracellular (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	TTGGCCTATTGGTTTGGCAAT	0.378													10	222					0.000978159	0.00917326	0.000978159	1	0
HTR2C	3358	broad.mit.edu	37	X	113965819	113965819	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:113965819G>C	uc004epu.1	+	4	880	c.152G>C	c.(151-153)GGG>GCG	p.G51A	HTR2C_uc010nqc.1_Missense_Mutation_p.G51A|HTR2C_uc004epv.1_Missense_Mutation_p.G51A	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	51	Extracellular (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	TTCCCAGACGGGGTACAAAAC	0.428													5	265					0	0	3.59834e-05	0	0
WDR44	54521	broad.mit.edu	37	X	117528104	117528104	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:117528104G>A	uc004eqn.2	+	5	1338	c.913G>A	c.(913-915)GAT>AAT	p.D305N	WDR44_uc004eqo.2_Missense_Mutation_p.D305N|WDR44_uc011mtr.1_Missense_Mutation_p.D280N|WDR44_uc010nqi.2_Missense_Mutation_p.D15N	NM_019045	NP_061918	Q5JSH3	WDR44_HUMAN	WD repeat domain 44 protein	305						cytosol|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm				lung(2)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	5						GCCTTCTCTTGATTTGGCAAG	0.423													20	125					0	0	0.000375601	0	0
DOCK11	139818	broad.mit.edu	37	X	117722243	117722244	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:117722243_117722244CC>TT	uc004eqp.2	+	17	2002_2003	c.1939_1940CC>TT	c.(1939-1941)CCC>TTC	p.P647F	DOCK11_uc004eqq.2_Missense_Mutation_p.P413F	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	647	DHR-1.				blood coagulation	cytosol	GTP binding			ovary(3)	3						GTATGTATATCCCCTGCAATTA	0.297													7	115					0	0	6.4e-05	0	0
DOCK11	139818	broad.mit.edu	37	X	117762188	117762188	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:117762188C>G	uc004eqp.2	+	34	3790	c.3727C>G	c.(3727-3729)CCA>GCA	p.P1243A	DOCK11_uc004eqq.2_Missense_Mutation_p.P1022A	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	1243					blood coagulation	cytosol	GTP binding			ovary(3)	3						TTCCCTCATCCCAGAAGGAGC	0.413													4	174					0	0	0.000157383	0	0
CUL4B	8450	broad.mit.edu	37	X	119672015	119672015	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:119672015C>A	uc004esw.2	-	16	2393	c.1956G>T	c.(1954-1956)ATG>ATT	p.M652I	CUL4B_uc010nqq.2_Missense_Mutation_p.M351I|CUL4B_uc004esv.2_Missense_Mutation_p.M634I	NM_003588	NP_003579	Q13620	CUL4B_HUMAN	cullin 4B isoform 1	652					cell cycle|DNA repair|ubiquitin-dependent protein catabolic process	Cul4B-RING ubiquitin ligase complex|nucleus	protein binding|ubiquitin protein ligase binding			lung(1)|central_nervous_system(1)|pancreas(1)	3						TAGAAAGTTCCATGTCTTTAA	0.308													8	214					0.000673444	0.00655963	0.000673444	1	0
CUL4B	8450	broad.mit.edu	37	X	119675486	119675486	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:119675486G>A	uc004esw.2	-	12	1905	c.1468C>T	c.(1468-1470)CTT>TTT	p.L490F	CUL4B_uc010nqq.2_Missense_Mutation_p.L189F|CUL4B_uc004esv.2_Missense_Mutation_p.L472F	NM_003588	NP_003579	Q13620	CUL4B_HUMAN	cullin 4B isoform 1	490					cell cycle|DNA repair|ubiquitin-dependent protein catabolic process	Cul4B-RING ubiquitin ligase complex|nucleus	protein binding|ubiquitin protein ligase binding			lung(1)|central_nervous_system(1)|pancreas(1)	3						TGCTGCAAAAGAACCTGAACT	0.368													42	251					0	0	0.000589545	0	0
CUL4B	8450	broad.mit.edu	37	X	119675558	119675558	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:119675558C>A	uc004esw.2	-	12	1833	c.1396G>T	c.(1396-1398)GAT>TAT	p.D466Y	CUL4B_uc010nqq.2_Missense_Mutation_p.D165Y|CUL4B_uc004esv.2_Missense_Mutation_p.D448Y	NM_003588	NP_003579	Q13620	CUL4B_HUMAN	cullin 4B isoform 1	466					cell cycle|DNA repair|ubiquitin-dependent protein catabolic process	Cul4B-RING ubiquitin ligase complex|nucleus	protein binding|ubiquitin protein ligase binding			lung(1)|central_nervous_system(1)|pancreas(1)	3						CGGTTTTCATCAAGGAGGTTA	0.318													11	315					0.000308642	0.00326428	0.000308642	1	0
GRIA3	2892	broad.mit.edu	37	X	122551581	122551581	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:122551581G>T	uc004etq.3	+	12	2122	c.1829G>T	c.(1828-1830)TGG>TTG	p.W610L	GRIA3_uc004etr.3_Missense_Mutation_p.W610L|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.W594L	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	610	Cytoplasmic (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	AACAGTCTTTGGTTTTCCTTG	0.408													11	145					4.3838e-07	5.65166e-06	0.000151284	1	0
GRIA3	2892	broad.mit.edu	37	X	122598809	122598809	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:122598809C>A	uc004etq.3	+	14	2463	c.2170C>A	c.(2170-2172)CGA>AGA	p.R724R	GRIA3_uc004etr.3_Silent_p.R724R|GRIA3_uc004ets.3_RNA	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	724	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	CGGAGTGGCCCGAGTGCGAAA	0.473													6	85					0.000157383	0.00173811	0.000157383	1	0
THOC2	57187	broad.mit.edu	37	X	122747263	122747263	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:122747263G>C	uc004etu.2	-	36	4696	c.4664C>G	c.(4663-4665)TCC>TGC	p.S1555C	THOC2_uc004etv.3_5'Flank|THOC2_uc010nqt.1_RNA|THOC2_uc004etw.1_Missense_Mutation_p.S376C	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	1555	Lys-rich.				intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						TTTGCCACCGGAGGAGATTTT	0.284													4	235					0	0	3.59834e-05	0	0
THOC2	57187	broad.mit.edu	37	X	122758425	122758425	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:122758425G>C	uc004etu.2	-	26	3185	c.3153C>G	c.(3151-3153)ACC>ACG	p.T1051T	THOC2_uc010nqt.1_5'Flank|THOC2_uc004etw.1_5'Flank	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	1051					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						TATGCCACCTGGTCACAGTCT	0.368													4	228					0	0	3.59834e-05	0	0
STAG2	10735	broad.mit.edu	37	X	123196817	123196817	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:123196817C>A	uc004etz.3	+	17	2043	c.1704C>A	c.(1702-1704)GCC>GCA	p.A568A	STAG2_uc004eua.2_Silent_p.A568A|STAG2_uc004eub.2_Silent_p.A568A|STAG2_uc004euc.2_Silent_p.A568A|STAG2_uc004eud.2_Silent_p.A568A|STAG2_uc004eue.2_Silent_p.A568A	NM_006603	NP_006594	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform b	568					cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5						AGCTTTTTGCCGTGGCCCTTC	0.358													6	96					0.000673444	0.00655963	0.000673444	1	0
BCORL1	63035	broad.mit.edu	37	X	129150007	129150007	+	Missense_Mutation	SNP	G	C	C	rs144120338		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:129150007G>C	uc004evb.1	+	4	3373	c.3259G>C	c.(3259-3261)GGG>CGG	p.G1087R	BCORL1_uc010nrd.1_Missense_Mutation_p.G989R	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	1087					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						GGCTAAGGCCGGGCAGGCTCG	0.572													4	160					0	0	0.00024832	0	0
RBMX2	51634	broad.mit.edu	37	X	129543263	129543263	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:129543263G>A	uc004evt.2	+	4	270	c.206G>A	c.(205-207)CGG>CAG	p.R69Q		NM_016024	NP_057108	Q9Y388	RBMX2_HUMAN	RNA binding motif protein, X-linked 2	69	RRM.						nucleotide binding|RNA binding			breast(3)|ovary(1)	4						AATCTCGTGCGGGACAAGAAA	0.333													7	129					0	0	8.12818e-05	0	0
ENOX2	10495	broad.mit.edu	37	X	129761946	129761946	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:129761946G>C	uc004evw.2	-	15	2105	c.1687C>G	c.(1687-1689)CGT>GGT	p.R563G	ENOX2_uc004evx.2_Missense_Mutation_p.R534G|ENOX2_uc004evy.2_Missense_Mutation_p.R534G|ENOX2_uc004evv.2_Missense_Mutation_p.R388G	NM_182314	NP_872114	Q16206	ENOX2_HUMAN	ecto-NOX disulfide-thiol exchanger 2 isoform b	563					cell growth|electron transport chain|regulation of growth|transport|ultradian rhythm	cytosol|external side of plasma membrane|extracellular space	nucleic acid binding|nucleotide binding|protein disulfide oxidoreductase activity			ovary(1)	1						TTATCAAGACGGTGCAAGTAG	0.433													6	260					0	0	0.000978159	0	0
GPC3	2719	broad.mit.edu	37	X	132834034	132834034	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:132834034G>C	uc004exe.1	-	4	1245	c.1055C>G	c.(1054-1056)TCT>TGT	p.S352C	GPC3_uc004exd.1_Missense_Mutation_p.S224C|GPC3_uc010nrn.1_Missense_Mutation_p.S375C|GPC3_uc011mvh.1_Missense_Mutation_p.S336C|GPC3_uc010nro.1_Missense_Mutation_p.S298C|GPC3_uc010nrp.1_Missense_Mutation_p.S224C	NM_004484	NP_004475	P51654	GPC3_HUMAN	glypican 3 isoform 2 precursor	352						extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding|peptidyl-dipeptidase inhibitor activity			lung(2)|prostate(1)|breast(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					GCGTTGTTGAGAATGGGCACA	0.323			T|D|Mis|N|F|S			Wilms tumour			Simpson-Golabi-Behmel_syndrome				4	297					0	0	0.00024832	0	0
PHF6	84295	broad.mit.edu	37	X	133527573	133527573	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:133527573G>C	uc004exj.2	+	4	485	c.283G>C	c.(283-285)GAT>CAT	p.D95H	PHF6_uc004exk.2_Missense_Mutation_p.D95H|PHF6_uc011mvk.1_Missense_Mutation_p.D61H|PHF6_uc004exh.2_Missense_Mutation_p.D95H|PHF6_uc010nrr.2_Missense_Mutation_p.D95H|PHF6_uc004exi.2_Missense_Mutation_p.D95H	NM_001015877	NP_001015877	Q8IWS0	PHF6_HUMAN	PHD finger protein 6 isoform 1	95	PHD-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					AATTGGTTGTGATGTGAAAAC	0.358													4	247					0	0	0.00024832	0	0
MIR542	664617	broad.mit.edu	37	X	133675378	133675378	+	RNA	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:133675378G>C	hsa-mir-542|MI0003686	-			c.90G>C			MIR450B_hsa-mir-450b|MI0005531_5'Flank|MIR450A1_hsa-mir-450a-1|MI0001652_5'Flank|uc011mvl.1_5'Flank|MIR450A2_hsa-mir-450a-2|MI0003187_5'Flank																	0						CTATGAAGATGAGTGGCTCCC	0.448													4	237					0	0	3.59834e-05	0	0
HTATSF1	27336	broad.mit.edu	37	X	135581828	135581828	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:135581828C>G	uc004ezw.2	+	3	680	c.258C>G	c.(256-258)ACC>ACG	p.T86T	HTATSF1_uc004ezx.2_Silent_p.T86T	NM_001163280	NP_001156752	O43719	HTSF1_HUMAN	HIV-1 Tat specific factor 1	86					regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|viral genome replication	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					CTAGTTCTACCGCAAATGTTG	0.453													4	202					0	0	0.000602214	0	0
HTATSF1	27336	broad.mit.edu	37	X	135592349	135592349	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:135592349C>G	uc004ezw.2	+	9	1455	c.1033C>G	c.(1033-1035)CAG>GAG	p.Q345E	HTATSF1_uc004ezx.2_Missense_Mutation_p.Q345E	NM_001163280	NP_001156752	O43719	HTSF1_HUMAN	HIV-1 Tat specific factor 1	345	RRM 2.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|viral genome replication	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AATCACTGCCCAGGCATGGGA	0.453													5	145					0	0	0.000274275	0	0
ARHGEF6	9459	broad.mit.edu	37	X	135751662	135751662	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:135751662G>C	uc004fab.2	-	21	2631	c.2169C>G	c.(2167-2169)GAC>GAG	p.D723E	ARHGEF6_uc011mwd.1_Missense_Mutation_p.D596E|ARHGEF6_uc011mwe.1_Missense_Mutation_p.D569E	NM_004840	NP_004831	Q15052	ARHG6_HUMAN	Rac/Cdc42 guanine nucleotide exchange factor 6	723					apoptosis|cell junction assembly|induction of apoptosis by extracellular signals|JNK cascade|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity				0	Acute lymphoblastic leukemia(192;0.000127)					CTCTGACCTCGTCCTTCAAGG	0.378													4	268					0	0	0.000157383	0	0
RBMX	27316	broad.mit.edu	37	X	135958762	135958762	+	Silent	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:135958762G>C	uc004fae.1	-	5	651	c.441C>G	c.(439-441)CTC>CTG	p.L147L	RBMX_uc004fac.1_5'Flank|RBMX_uc011mwf.1_Intron|RBMX_uc004fad.1_Silent_p.L147L|RBMX_uc011mwg.1_Silent_p.L108L|RBMX_uc004faf.1_Silent_p.L8L|RBMX_uc010nsf.1_Silent_p.L108L|RBMX_uc004fag.1_Silent_p.L19L	NM_002139	NP_002130	P38159	HNRPG_HUMAN	RNA binding motif protein, X-linked isoform 1	147						catalytic step 2 spliceosome|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TTTTTACTGGGAGTGGTCCCC	0.448													4	248					0	0	0.00024832	0	0
RBMX	27316	broad.mit.edu	37	X	135961216	135961216	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:135961216G>T	uc004fae.1	-	3	386	c.176C>A	c.(175-177)CCA>CAA	p.P59Q	RBMX_uc011mwf.1_Missense_Mutation_p.P59Q|RBMX_uc004fad.1_Missense_Mutation_p.P59Q|RBMX_uc011mwg.1_Missense_Mutation_p.P20Q|RBMX_uc004faf.1_5'UTR|RBMX_uc010nsf.1_Missense_Mutation_p.P20Q|RBMX_uc004fag.1_Intron	NM_002139	NP_002130	P38159	HNRPG_HUMAN	RNA binding motif protein, X-linked isoform 1	59	RRM.					catalytic step 2 spliceosome|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					AGCGTCTGCTGGGCTTTCAAA	0.378													11	290					2.23348e-06	2.81403e-05	0.000422831	1	0
ATP11C	286410	broad.mit.edu	37	X	138864883	138864883	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:138864883C>G	uc004faz.2	-	18	1883	c.1784G>C	c.(1783-1785)GGG>GCG	p.G595A	ATP11C_uc004fay.2_RNA|ATP11C_uc004fba.2_Missense_Mutation_p.G595A	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	ATPase, class VI, type 11C isoform a	595	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(5)|large_intestine(3)	8	Acute lymphoblastic leukemia(192;0.000127)					TGTCCGATACCCATCCTAGGA	0.363													4	142					0	0	0.00024832	0	0
CXorf66	347487	broad.mit.edu	37	X	139047572	139047572	+	Silent	SNP	A	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:139047572A>C	uc004fbb.2	-	1	106	c.84T>G	c.(82-84)ACT>ACG	p.T28T		NM_001013403	NP_001013421	Q5JRM2	CX066_HUMAN	hypothetical protein LOC347487 precursor	28	Extracellular (Potential).					integral to membrane					0						ACCTACCTGTAGTAGAAGATC	0.333													5	241					0	0	0.000602214	0	0
AFF2	2334	broad.mit.edu	37	X	147733536	147733536	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:147733536C>G	uc004fcp.2	+	2	543	c.64C>G	c.(64-66)CGT>GGT	p.R22G	AFF2_uc004fco.2_Missense_Mutation_p.R22G|AFF2_uc004fcq.2_Missense_Mutation_p.R22G|AFF2_uc004fcr.2_Missense_Mutation_p.R22G|AFF2_uc011mxb.1_Missense_Mutation_p.R22G|AFF2_uc004fcs.2_Missense_Mutation_p.R22G	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	22					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					TGAACAAGACCGTAGTGCACT	0.358													8	263					0	0	0.000157383	0	0
AFF2	2334	broad.mit.edu	37	X	147743486	147743486	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:147743486G>A	uc004fcp.2	+	3	717	c.238G>A	c.(238-240)GAA>AAA	p.E80K	AFF2_uc004fco.2_Missense_Mutation_p.E76K|AFF2_uc004fcq.2_Missense_Mutation_p.E76K|AFF2_uc004fcr.2_Missense_Mutation_p.E76K|AFF2_uc011mxb.1_Missense_Mutation_p.E80K|AFF2_uc004fcs.2_Missense_Mutation_p.E76K	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	80					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					AAACTATGATGAAATGAAGAA	0.403													31	234					0	0	0.000339439	0	0
AFF2	2334	broad.mit.edu	37	X	148037192	148037192	+	Silent	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:148037192C>G	uc004fcp.2	+	11	2096	c.1617C>G	c.(1615-1617)TCC>TCG	p.S539S	AFF2_uc004fcq.2_Silent_p.S529S|AFF2_uc004fcr.2_Silent_p.S500S|AFF2_uc011mxb.1_Silent_p.S504S|AFF2_uc004fcs.2_Silent_p.S506S|AFF2_uc011mxc.1_Silent_p.S180S	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	539					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					AAGTGACATCCCAGAACAAGT	0.428													4	240					0	0	3.59834e-05	0	0
MAMLD1	10046	broad.mit.edu	37	X	149638201	149638201	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:149638201C>G	uc004fee.1	+	3	432	c.356C>G	c.(355-357)CCT>CGT	p.P119R	MAMLD1_uc011mxt.1_Missense_Mutation_p.P81R|MAMLD1_uc011mxu.1_Missense_Mutation_p.P94R|MAMLD1_uc011mxv.1_Missense_Mutation_p.P94R|MAMLD1_uc011mxw.1_Missense_Mutation_p.P46R	NM_005491	NP_005482	Q13495	MAMD1_HUMAN	mastermind-like domain containing 1	119					male gonad development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(192;6.56e-05)					AATCCTAGCCCTGCGGCTATG	0.507													4	176					0	0	0.00024832	0	0
MAMLD1	10046	broad.mit.edu	37	X	149671589	149671589	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:149671589C>G	uc004fee.1	+	5	2162	c.2086C>G	c.(2086-2088)CAG>GAG	p.Q696E	MAMLD1_uc011mxu.1_Intron|MAMLD1_uc011mxv.1_Missense_Mutation_p.Q671E|MAMLD1_uc011mxw.1_Missense_Mutation_p.Q582E	NM_005491	NP_005482	Q13495	MAMD1_HUMAN	mastermind-like domain containing 1	696					male gonad development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(192;6.56e-05)					CAGGCACCCCCAGGTCAGCCT	0.602													4	177					0	0	3.59834e-05	0	0
MTMR1	8776	broad.mit.edu	37	X	149905727	149905727	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:149905727G>C	uc004fei.2	+	11	1391	c.1256G>C	c.(1255-1257)GGG>GCG	p.G419A	MTMR1_uc011mya.1_Missense_Mutation_p.G325A|MTMR1_uc004feh.1_Missense_Mutation_p.G427A|MTMR1_uc004fej.2_RNA|MTMR1_uc010ntf.2_RNA	NM_003828	NP_003819	Q13613	MTMR1_HUMAN	myotubularin-related protein 1	419	Myotubularin phosphatase.					plasma membrane	protein tyrosine phosphatase activity			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CTGCTTGCTGGGGCAGTAAGA	0.423													4	137					0	0	3.59834e-05	0	0
PRRG3	79057	broad.mit.edu	37	X	150869165	150869165	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:150869165G>A	uc004few.1	+	4	746	c.356G>A	c.(355-357)CGG>CAG	p.R119Q		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	119	Cytoplasmic (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GCTCAGAACCGGTACCTAGCC	0.632													28	92					0	0	0.000720815	0	0
CNGA2	1260	broad.mit.edu	37	X	150912736	150912737	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:150912736_150912737CG>AT	uc004fey.1	+	7	1985_1986	c.1761_1762CG>AT	c.(1759-1764)AACGAA>AAATAA	p.587_588NE>K*		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	587_588	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGGATGAGAACGAAGTGGCAAC	0.545													7	180					0	0	6.4e-05	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303199	151303199	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:151303199C>A	uc004ffk.2	-	5	1302	c.894G>T	c.(892-894)TGG>TGT	p.W298C	MAGEA10_uc004ffl.2_Missense_Mutation_p.W298C	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	298	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					CCCTTGGACCCCACAGAAACT	0.527													7	172					8.12818e-05	0.000938396	8.12818e-05	1	0
MAGEA12	4111	broad.mit.edu	37	X	151900616	151900616	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:151900616G>A	uc010ntp.2	-	3	539	c.185C>T	c.(184-186)CCC>CTC	p.P62L	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.P62L|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	62										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGGACTGTGGGGAGGACTTGG	0.597													20	146					0	0	0.000229342	0	0
PNMA3	29944	broad.mit.edu	37	X	152225508	152225508	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:152225508G>C	uc004fhc.2	+	2	432	c.96G>C	c.(94-96)GAG>GAC	p.E32D	PNMA5_uc004fha.3_5'Flank|PNMA3_uc004fhd.2_5'Flank	NM_013364	NP_037496	Q9UL41	PNMA3_HUMAN	paraneoplastic cancer-testis-brain antigen	32					apoptosis	nucleolus	nucleic acid binding|zinc ion binding			skin(2)|large_intestine(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					actgtggcgaggatgagtttg	0													4	96					0	0	3.59834e-05	0	0
PNMA3	29944	broad.mit.edu	37	X	152226003	152226003	+	Silent	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:152226003C>A	uc004fhc.2	+	2	927	c.591C>A	c.(589-591)CCC>CCA	p.P197P	PNMA5_uc004fha.3_5'Flank|PNMA3_uc004fhd.2_5'Flank	NM_013364	NP_037496	Q9UL41	PNMA3_HUMAN	paraneoplastic cancer-testis-brain antigen	197					apoptosis	nucleolus	nucleic acid binding|zinc ion binding			skin(2)|large_intestine(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					ggcaggtgcccgagggggaaa	0													7	125					2.17888e-05	0.000264662	0.000442599	1	0
AVPR2	554	broad.mit.edu	37	X	153171977	153171977	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:153171977G>C	uc004fjh.3	+	3	982	c.911G>C	c.(910-912)GGG>GCG	p.G304A	AVPR2_uc004fjg.3_Missense_Mutation_p.G93A|AVPR2_uc004fji.2_3'UTR	NM_000054	NP_000045	P30518	V2R_HUMAN	arginine vasopressin receptor 2 isoform 1	304	Extracellular (Potential).				activation of adenylate cyclase activity|excretion|G-protein signaling, coupled to cAMP nucleotide second messenger|hemostasis|positive regulation of gene expression|transmembrane transport|water transport	endoplasmic reticulum|endosome|Golgi apparatus|integral to plasma membrane	vasopressin receptor activity			breast(1)	1	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				Conivaptan(DB00872)|Terlipressin(DB02638)|Vasopressin(DB00067)	ACCTCCACAGGGGCGCCCTTT	0.622													4	211					0	0	0.000602214	0	0
HCFC1	3054	broad.mit.edu	37	X	153220600	153220600	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:153220600C>T	uc004fjp.2	-	17	3778	c.3250G>A	c.(3250-3252)GAG>AAG	p.E1084K		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	1084	HCF repeat 2.			E->A: No effect on cleavage at HCF repeat.	cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					gtgCCCGTCTCGTGGGTCTCG	0.537													7	72					0	0	8.12818e-05	0	0
TKTL1	8277	broad.mit.edu	37	X	153557975	153557975	+	Silent	SNP	G	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:153557975G>T	uc004fkg.2	+	13	1914	c.1728G>T	c.(1726-1728)CTG>CTT	p.L576L	TKTL1_uc011mzl.1_Silent_p.L570L|TKTL1_uc011mzm.1_Silent_p.L372L|TKTL1_uc004fkh.2_Silent_p.L520L	NM_012253	NP_036385	P51854	TKTL1_HUMAN	transketolase-like 1 isoform a	576					glucose catabolic process|thiamine metabolic process	cytoplasm|nucleus	metal ion binding|transketolase activity			ovary(3)|skin(1)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.82e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					AGGAATTGCTGGATATGTATG	0.502													7	140					3.86212e-05	0.000457303	0.000673444	1	0
FLNA	2316	broad.mit.edu	37	X	153592647	153592647	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:153592647G>C	uc004fkk.2	-	14	2365	c.2116C>G	c.(2116-2118)CCA>GCA	p.P706A	FLNA_uc010nuu.1_Missense_Mutation_p.P706A	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	706	Filamin 5.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					ACCCGAAGTGGGGCCTTGCCA	0.647													4	155					0	0	8.12818e-05	0	0
RPL10	6134	broad.mit.edu	37	X	153626879	153626879	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:153626879C>A	uc004fkm.2	+	2	207	c.19C>A	c.(19-21)CGT>AGT	p.R7S	uc010nuv.1_5'UTR|RPL10_uc004fko.2_Missense_Mutation_p.R7S|RPL10_uc004fkn.1_Missense_Mutation_p.R7S|RPL10_uc004fkp.1_Missense_Mutation_p.R7S|RPL10_uc004fkq.1_5'Flank|RPL10_uc004fkr.1_5'Flank|SNORA70_uc010nux.1_5'Flank	NM_006013	NP_006004	P27635	RL10_HUMAN	ribosomal protein L10	7					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|endoplasmic reticulum	structural constituent of ribosome				0	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CCGCCCCGCCCGTTGGTGAGT	0.572													8	248					0.000978159	0.00917326	0.000978159	1	0
MPP1	4354	broad.mit.edu	37	X	154007562	154007562	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:154007562C>A	uc004fmp.1	-	12	1406	c.1291G>T	c.(1291-1293)GAC>TAC	p.D431Y	MPP1_uc010nvg.1_Missense_Mutation_p.D411Y|MPP1_uc011mzv.1_Missense_Mutation_p.D401Y|MPP1_uc004fmq.1_Missense_Mutation_p.D385Y|MPP1_uc011mzw.1_Missense_Mutation_p.D414Y	NM_002436	NP_002427	Q00013	EM55_HUMAN	palmitoylated membrane protein 1	431	Guanylate kinase-like.|Interaction with MPP5.				regulation of neutrophil chemotaxis|signal transduction	integral to plasma membrane|membrane fraction|stereocilium	guanylate kinase activity|protein binding			ovary(2)|central_nervous_system(1)	3	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					AGTGAGAGGTCAAAGTAGTGA	0.512													7	130					0.00010058	0.00115734	0.00010058	1	0
F8	2157	broad.mit.edu	37	X	154157962	154157962	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chrX:154157962G>C	uc004fmt.2	-	14	4274	c.4103C>G	c.(4102-4104)CCG>CGG	p.P1368R		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1368	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GAGGGTGCTCGGGGTCAAATG	0.438													4	164					0	0	0.00024832	0	0
FAF1	11124	broad.mit.edu	37	1	50907144	50907145	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:50907144_50907145delGA	uc009vyx.1	-	20	1983_1984	c.1920_1921delTC	c.(1918-1923)CCTCAAfs	p.P640fs	FAF1_uc009vyw.1_RNA|FAF1_uc001cse.1_Frame_Shift_Del_p.P640fs|FAF1_uc010onc.1_Frame_Shift_Del_p.P398fs	NM_007051	NP_008982	Q9UNN5	FAF1_HUMAN	FAS-associated factor 1	640_641	UBX.				apoptosis|cytoplasmic sequestering of NF-kappaB|positive regulation of apoptosis|positive regulation of protein complex assembly|proteasomal ubiquitin-dependent protein catabolic process|regulation of protein catabolic process	CD95 death-inducing signaling complex|cytosol|perinuclear region of cytoplasm	heat shock protein binding|NF-kappaB binding|protein kinase binding|protein kinase regulator activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(3;3.18e-11)|all cancers(3;0.00526)		AGGGTTTCTTGAGGGAACAACT	0.436													2	4	---	---	---	---					
FLG	2312	broad.mit.edu	37	1	152276467	152276468	+	In_Frame_Ins	INS	-	GGA	GGA			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr1:152276467_152276468insGGA	uc001ezu.1	-	3	10930_10931	c.10894_10895insTCC	c.(10894-10896)CAG>CTCCAG	p.3631_3632insL		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3631_3632	Filaggrin 22.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTCTGCTGACTGCTGGTGGTGG	0.554									Ichthyosis				10	418	---	---	---	---					
FAM22D	728130	broad.mit.edu	37	10	89120886	89120886	+	Frame_Shift_Del	DEL	G	-	-			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:89120886delG	uc001kes.2	+	2	1361	c.815delG	c.(814-816)CGGfs	p.R272fs	FAM22D_uc009xte.1_Frame_Shift_Del_p.R272fs	NM_001009610	NP_001009610	Q5VT03	FA22D_HUMAN	hypothetical protein LOC728130	272											0						CCCCTGGCCCGGAGGCACCTT	0.607													8	61	---	---	---	---					
KIF11	3832	broad.mit.edu	37	10	94397154	94397154	+	Frame_Shift_Del	DEL	A	-	-			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr10:94397154delA	uc001kic.2	+	16	2320	c.2012delA	c.(2011-2013)CAAfs	p.Q671fs	KIF11_uc010qnq.1_Intron	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	671					blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						ATAGAAGATCAAAAAAAGGAA	0.323													7	528	---	---	---	---					
PSMA1	5682	broad.mit.edu	37	11	14529252	14529254	+	In_Frame_Del	DEL	CAT	-	-			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:14529252_14529254delCAT	uc001mlk.2	-	9	829_831	c.683_685delATG	c.(682-687)GATGTG>GTG	p.D228del	PSMA1_uc001mll.2_In_Frame_Del_p.D234del|PSMA1_uc010rcp.1_RNA|PSMA1_uc001mlj.2_In_Frame_Del_p.D203del	NM_002786	NP_002777	P25786	PSA1_HUMAN	proteasome alpha 1 subunit isoform 2	228					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|polysome|proteasome core complex, alpha-subunit complex	protein binding|RNA binding|threonine-type endopeptidase activity			upper_aerodigestive_tract(1)|skin(1)	2						AATGGAGACACATCATCATCATC	0.360													10	274	---	---	---	---					
EHF	26298	broad.mit.edu	37	11	34668169	34668169	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr11:34668169delC	uc001mvr.1	+	3	392	c.281delC	c.(280-282)ACCfs	p.T94fs	EHF_uc009yke.1_Frame_Shift_Del_p.T94fs|EHF_uc009ykf.1_Frame_Shift_Del_p.T97fs	NM_012153	NP_036285	Q9NZC4	EHF_HUMAN	ets homologous factor	94	PNT.				cell proliferation|epithelial cell differentiation|multicellular organismal development|positive regulation of transcription, DNA-dependent		protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(20;0.117)	Epithelial(1;0.055)|all cancers(1;0.137)|STAD - Stomach adenocarcinoma(6;0.235)			CAGGAGTTCACCCGGGCGGCA	0.572													8	186	---	---	---	---					
RPAP3	79657	broad.mit.edu	37	12	48084302	48084302	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:48084302delT	uc001rpr.2	-	6	782	c.666delA	c.(664-666)AAAfs	p.K222fs	RPAP3_uc010slk.1_Frame_Shift_Del_p.K63fs|RPAP3_uc001rps.2_Frame_Shift_Del_p.K222fs	NM_024604	NP_078880	Q9H6T3	RPAP3_HUMAN	RNA polymerase II associated protein 3 isoform	222	TPR 4.						binding			ovary(1)	1	Lung SC(27;0.192)					AGAAAATACCTTTTTTGGCCT	0.363													7	327	---	---	---	---					
ASCL1	429	broad.mit.edu	37	12	103352171	103352172	+	In_Frame_Ins	INS	-	GCA	GCA	rs3832799		TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr12:103352171_103352172insGCA	uc001tjr.3	+	1	720_721	c.149_150insGCA	c.(148-150)GCG>GCGCAG	p.62_63insQ		NM_004316	NP_004307	P50553	ASCL1_HUMAN	achaete-scute complex homolog 1	62_63					cerebral cortex GABAergic interneuron differentiation|negative regulation of apoptosis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|noradrenergic neuron fate commitment|Notch signaling pathway|positive regulation of neuron differentiation|positive regulation of transcription from RNA polymerase II promoter|response to retinoic acid|sympathetic nervous system development	nucleus	bHLH transcription factor binding|E-box binding|sequence-specific DNA binding transcription factor activity|transcription factor binding transcription factor activity				0						gcgcagagcgcgcagcagcagc	0.446													5	3	---	---	---	---					
C14orf49	161176	broad.mit.edu	37	14	95916406	95916407	+	Frame_Shift_Del	DEL	CG	-	-			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr14:95916406_95916407delCG	uc001yei.3	-	7	1325_1326	c.1310_1311delCG	c.(1309-1311)GCGfs	p.A437fs	C14orf49_uc010avi.2_Frame_Shift_Del_p.A437fs|C14orf49_uc001yej.1_Frame_Shift_Del_p.A437fs	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	437	Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		GCTCCACCGCCGCGGCATTGCG	0.649													4	8	---	---	---	---					
ITGA11	22801	broad.mit.edu	37	15	68657130	68657130	+	Frame_Shift_Del	DEL	A	-	-			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr15:68657130delA	uc002ari.2	-	4	359	c.272delT	c.(271-273)GTCfs	p.V91fs	ITGA11_uc010bib.2_Frame_Shift_Del_p.V91fs	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	91	FG-GAP 2.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	GGACAGGGTGACCCTTCCTGG	0.647													7	45	---	---	---	---					
RPGRIP1L	23322	broad.mit.edu	37	16	53691525	53691525	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr16:53691525delT	uc002ehp.2	-	13	1485	c.1421delA	c.(1420-1422)AATfs	p.N474fs	RPGRIP1L_uc002eho.3_Frame_Shift_Del_p.N474fs|RPGRIP1L_uc010vgy.1_Frame_Shift_Del_p.N474fs|RPGRIP1L_uc010cbx.2_Frame_Shift_Del_p.N474fs|RPGRIP1L_uc010vgz.1_Frame_Shift_Del_p.N474fs	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	474	Potential.				negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				AAGGTCTCCATTTTTTTGTTC	0.294													7	524	---	---	---	---					
ITPRIPL1	150771	broad.mit.edu	37	2	96992793	96992795	+	In_Frame_Del	DEL	GAG	-	-			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr2:96992793_96992795delGAG	uc002svx.2	+	3	759_761	c.424_426delGAG	c.(424-426)GAGdel	p.E147del	ITPRIPL1_uc010yuk.1_In_Frame_Del_p.E139del|ITPRIPL1_uc002svy.2_In_Frame_Del_p.E155del|ITPRIPL1_uc010yul.1_In_Frame_Del_p.E139del	NM_001008949	NP_001008949	Q6GPH6	IPIL1_HUMAN	inositol 1,4,5-triphosphate receptor interacting	147	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(2)|ovary(1)	3						TTCCAGCAGTGAGGAGGAGGAGG	0.532													7	105	---	---	---	---					
CSRP2BP	57325	broad.mit.edu	37	20	18142850	18142850	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr20:18142850delC	uc002wqj.2	+	6	1691	c.1069delC	c.(1069-1071)CCAfs	p.P357fs	CSRP2BP_uc002wqk.2_Frame_Shift_Del_p.P229fs|CSRP2BP_uc010zru.1_Frame_Shift_Del_p.P228fs	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	357					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						AGATCTGATTCCAGATGTGAT	0.458													7	375	---	---	---	---					
TRIOBP	11078	broad.mit.edu	37	22	38119882	38119884	+	In_Frame_Del	DEL	CCT	-	-			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr22:38119882_38119884delCCT	uc003atr.2	+	7	1590_1592	c.1319_1321delCCT	c.(1318-1323)GCCTCC>GCC	p.S442del	TRIOBP_uc003atu.2_In_Frame_Del_p.S270del|TRIOBP_uc003atq.1_In_Frame_Del_p.S442del|TRIOBP_uc003ats.1_In_Frame_Del_p.S270del	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	442					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					AATCCCAGAGCCTCCTCTCCCAG	0.601													7	120	---	---	---	---					
VENTXP7	391518	broad.mit.edu	37	3	21447901	21447902	+	RNA	INS	-	CC	CC	rs143568999	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr3:21447901_21447902insCC	uc003ccd.2	+	1		c.684_685insCC				NR_002311				Homo sapiens VENT homeobox (Xenopus laevis) pseudogene 7 (VENTXP7), non-coding RNA.												0						CTGGCATACCACCCCCCACGCC	0.663													7	3	---	---	---	---					
LNX1	84708	broad.mit.edu	37	4	54344769	54344769	+	Frame_Shift_Del	DEL	G	-	-	rs144424207	by1000genomes	TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr4:54344769delG	uc003hag.3	-	8	1882	c.1626delC	c.(1624-1626)CCCfs	p.P542fs	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Frame_Shift_Del_p.P446fs|LNX1_uc003hah.3_RNA	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	542	PDZ 3.					cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			TGACTCCTCCGGGCTCAACAC	0.448													8	151	---	---	---	---					
PAPD7	11044	broad.mit.edu	37	5	6755013	6755014	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:6755013_6755014delAC	uc003jdx.1	+	13	1713_1714	c.1584_1585delAC	c.(1582-1587)AAACACfs	p.K528fs	PAPD7_uc011cmn.1_Frame_Shift_Del_p.K518fs|PAPD7_uc010itl.1_Frame_Shift_Del_p.K348fs	NM_006999	NP_008930	Q5XG87	PAPD7_HUMAN	DNA polymerase sigma	528_529					cell division|DNA replication|double-strand break repair|mitotic chromosome condensation|response to drug|sister chromatid cohesion	nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|SMC protein binding			ovary(1)	1						GGAGGAAAAAACACACACACAC	0.653													7	56	---	---	---	---					
UBLCP1	134510	broad.mit.edu	37	5	158697396	158697398	+	In_Frame_Del	DEL	ATG	-	-			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr5:158697396_158697398delATG	uc003lxq.2	+	4	601_603	c.275_277delATG	c.(274-279)AATGAT>AAT	p.D94del		NM_145049	NP_659486	Q8WVY7	UBCP1_HUMAN	ubiquitin-like domain containing CTD phosphatase	94						nucleus	phosphoprotein phosphatase activity			ovary(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0523)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCCCCTGACAATGATGATGTTGT	0.320													8	258	---	---	---	---					
KIF13A	63971	broad.mit.edu	37	6	17804670	17804671	+	Frame_Shift_Ins	INS	-	A	A			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr6:17804670_17804671insA	uc003ncg.3	-	20	2480_2481	c.2375_2376insT	c.(2374-2376)GTGfs	p.V792fs	KIF13A_uc003ncf.2_Frame_Shift_Ins_p.V792fs|KIF13A_uc003nch.3_Frame_Shift_Ins_p.V792fs|KIF13A_uc003nci.3_Frame_Shift_Ins_p.V792fs	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	792					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			ATACATTCGCCACCCCGATGAG	0.515													4	7	---	---	---	---					
TPK1	27010	broad.mit.edu	37	7	144320288	144320288	+	Frame_Shift_Del	DEL	G	-	-			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr7:144320288delG	uc003weq.2	-	6	428	c.325delC	c.(325-327)CAAfs	p.Q109fs	TPK1_uc003weo.2_Frame_Shift_Del_p.Q104fs|TPK1_uc003wep.2_RNA|TPK1_uc003wer.2_Frame_Shift_Del_p.Q109fs|TPK1_uc003wes.2_RNA	NM_022445	NP_071890	Q9H3S4	TPK1_HUMAN	thiamin pyrophosphokinase 1 isoform a	109					thiamine diphosphate biosynthetic process	cytosol	ATP binding|kinase activity|thiamine diphosphokinase activity			ovary(2)	2					Thiamine(DB00152)	ATCTTCTTTTGGAGCATTTTA	0.318													7	387	---	---	---	---					
COPS5	10987	broad.mit.edu	37	8	67958081	67958082	+	Frame_Shift_Ins	INS	-	T	T			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr8:67958081_67958082insT	uc003xxe.2	-	7	1216_1217	c.885_886insA	c.(883-888)AAATCAfs	p.K295fs	COPS5_uc003xxd.2_Frame_Shift_Ins_p.K231fs|COPS5_uc003xxf.2_Frame_Shift_Ins_p.K340fs|COPS5_uc010lyu.1_RNA	NM_006837	NP_006828	Q92905	CSN5_HUMAN	COP9 signalosome subunit 5	295_296					cullin deneddylation|transcription from RNA polymerase II promoter	eukaryotic translation initiation factor 3 complex|signalosome	metal ion binding|metallopeptidase activity|protein binding|transcription coactivator activity|translation initiation factor activity			ovary(1)|skin(1)	2	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00389)|OV - Ovarian serous cystadenocarcinoma(28;0.00691)|all cancers(69;0.0205)|BRCA - Breast invasive adenocarcinoma(89;0.153)			TTGTCTTCTGATTTTCGGTCAT	0.411													12	159	---	---	---	---					
CDKN2A	1029	broad.mit.edu	37	9	21971145	21971148	+	Frame_Shift_Del	DEL	GTTG	-	-			TCGA-ER-A19P-06A-11D-A196-08	TCGA-ER-A19P-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	eb85faa4-af09-4a2e-8ba8-7c7763e59018	33753b8c-18af-4cb8-8932-e2abd794d1bf	g.chr9:21971145_21971148delGTTG	uc003zpk.2	-	2	422_425	c.210_213delCAAC	c.(208-213)CCCAACfs	p.P70fs	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Frame_Shift_Del_p.Q126fs	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	70_71	ANK 2.		Missing (in melanoma; loss of CDK4 binding).|N -> K (in CMM2).|N -> S.		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(13)|p.N71D(2)|p.C72fs*74(2)|p.N71K(2)|p.N71fs*50(1)|p.P70S(1)|p.P70A(1)|p.L65fs*38(1)|p.P70L(1)|p.L127fs*>47(1)|p.N71fs*0(1)|p.V59fs*45(1)|p.E61_L94del(1)|p.Q126R(1)|p.A68fs*3(1)|p.L63fs*75(1)|p.N71N(1)|p.N71I(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		GGTCGGCGCAGTTGGGCTCCGCGC	0.721		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			7	83	---	---	---	---					
