Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CCDC27	148870	broad.mit.edu	37	1	3669271	3669271	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr1:3669271C>T	uc001akv.2	+	1	307	c.226C>T	c.(226-228)CGG>TGG	p.R76W		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	76										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		CATGGCCAGCCGGGACGCCCG	0.622													36	51					0	0	0.013726	0	0
LIN28A	79727	broad.mit.edu	37	1	26751818	26751818	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr1:26751818C>T	uc001bmj.2	+	3	367	c.253C>T	c.(253-255)CGG>TGG	p.R85W	LIN28A_uc001bmi.1_RNA	NM_024674	NP_078950	Q9H9Z2	LN28A_HUMAN	lin-28 homolog	85	CSD.				miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing|stem cell maintenance	cytoplasmic mRNA processing body|nucleolus|stress granule	DNA binding|zinc ion binding			central_nervous_system(1)	1						GGAAGGGTTCCGGAGCTTGAA	0.433													6	81					0	0	0.001168	0	0
PHC2	1912	broad.mit.edu	37	1	33832801	33832801	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr1:33832801T>G	uc001bxg.1	-	6	946	c.892A>C	c.(892-894)AGC>CGC	p.S298R	PHC2_uc001bxh.1_Missense_Mutation_p.S269R|PHC2_uc009vuh.1_Missense_Mutation_p.S298R|PHC2_uc001bxi.1_Missense_Mutation_p.S298R	NM_198040	NP_932157	Q8IXK0	PHC2_HUMAN	polyhomeotic-like 2 isoform a	298					multicellular organismal development	PcG protein complex	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				GGCACACTGCTGTTGCCATCT	0.602													13	144					0	0	0.002450	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			74	89					0	0	0.014410	0	0
FAM5C	339479	broad.mit.edu	37	1	190067878	190067878	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr1:190067878C>A	uc001gse.1	-	8	1803	c.1571G>T	c.(1570-1572)TGG>TTG	p.W524L	FAM5C_uc010pot.1_Missense_Mutation_p.W422L	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	524						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GGGATCAAACCAGCTATTGAG	0.448													38	105					4.0492e-12	7.74458e-12	0.006999	1	0
KCNT2	343450	broad.mit.edu	37	1	196250003	196250003	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr1:196250003A>C	uc001gtd.1	-	25	2957	c.2897T>G	c.(2896-2898)CTT>CGT	p.L966R	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.L892R|KCNT2_uc001gtf.1_Missense_Mutation_p.L942R|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.L942R|KCNT2_uc001gth.1_Missense_Mutation_p.L463R	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	966	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						AGATGTAGTAAGTTTCTGAGA	0.328													4	53					0	0	0.009096	0	0
IARS2	55699	broad.mit.edu	37	1	220315224	220315224	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr1:220315224C>T	uc001hmc.2	+	20	2598	c.2494C>T	c.(2494-2496)CGT>TGT	p.R832C	IARS2_uc001hmd.2_Missense_Mutation_p.R168C	NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	832					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	TGTAATAGTTCGTTCTTTTGC	0.378													55	109					0	0	0.014410	0	0
ANK3	288	broad.mit.edu	37	10	61828512	61828512	+	Silent	SNP	G	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr10:61828512G>T	uc001jky.2	-	37	12319	c.12127C>A	c.(12127-12129)CGG>AGG	p.R4043R	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4043					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGGCCACCCCGGGAAGTCTCG	0.488													9	146					7.48243e-07	1.3906e-06	0.006214	1	0
PDE6C	5146	broad.mit.edu	37	10	95380467	95380467	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr10:95380467G>A	uc001kiu.3	+	2	697	c.559G>A	c.(559-561)GGC>AGC	p.G187S		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	187	GAF 1.				visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				GATCGTGGTGGGCAAGGAGGT	0.448													9	102					0	0	0.004482	0	0
PLCE1	51196	broad.mit.edu	37	10	95791335	95791335	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr10:95791335G>C	uc001kjk.2	+	2	1166	c.532G>C	c.(532-534)GCA>CCA	p.A178P	PLCE1_uc010qnx.1_Missense_Mutation_p.A178P	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	178					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				GACAGGCAGAGCACACCCTGA	0.413													3	107					0	0	0.004672	0	0
ATRNL1	26033	broad.mit.edu	37	10	117059735	117059735	+	Silent	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr10:117059735C>T	uc001lcg.2	+	16	2993	c.2607C>T	c.(2605-2607)GGC>GGT	p.G869G	ATRNL1_uc010qsm.1_Silent_p.G44G|ATRNL1_uc010qsn.1_5'Flank	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	869	C-type lectin.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		TGGCAAATGGCCTTGTCTGTG	0.438													7	32					0	0	0.003080	0	0
UPK2	7379	broad.mit.edu	37	11	118827131	118827131	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr11:118827131C>A	uc001puh.2	+	1	106	c.71C>A	c.(70-72)GCT>GAT	p.A24D		NM_006760	NP_006751	O00526	UPK2_HUMAN	uroplakin 2 precursor	24					cellular membrane organization|epithelial cell differentiation|multicellular organismal development	integral to endoplasmic reticulum membrane|integral to plasma membrane				skin(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.122)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;7.47e-05)		TCCCCAGGGGCTGCAGGTCTC	0.637													12	53					0.00136819	0.00230371	0.013537	1	0
OR6T1	219874	broad.mit.edu	37	11	123813903	123813903	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr11:123813903A>C	uc010sab.1	-	1	643	c.643T>G	c.(643-645)TCA>GCA	p.S215A		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		TAGGAAACTGAGGTCAGAGCC	0.547													5	73					0	0	0.000602	0	0
OR10S1	219873	broad.mit.edu	37	11	123847612	123847612	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr11:123847612G>A	uc001pzm.1	-	1	787	c.787C>T	c.(787-789)CTC>TTC	p.L263F		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	263	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		TAGTACAGGAGCACCCCAGTG	0.602													25	82					0	0	0.002780	0	0
APOLD1	81575	broad.mit.edu	37	12	12940476	12940476	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr12:12940476C>G	uc001rau.3	+	2	814	c.730C>G	c.(730-732)CTG>GTG	p.L244V	DDX47_uc001rav.2_Intron|APOLD1_uc001raw.3_Missense_Mutation_p.L213V	NM_001130415	NP_001123887	Q96LR9	APLD1_HUMAN	apolipoprotein L domain containing 1 isoform 1	244	Potential.				angiogenesis|cell differentiation|lipid transport|lipoprotein metabolic process	extracellular region|integral to membrane|plasma membrane	lipid binding			ovary(1)	1		Prostate(47;0.0632)		BRCA - Breast invasive adenocarcinoma(232;0.0338)|GBM - Glioblastoma multiforme(207;0.149)		CACCGGGGCTCTGGACGAACT	0.637													4	89					0	0	0.009096	0	0
UBE3B	89910	broad.mit.edu	37	12	109949049	109949049	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr12:109949049G>A	uc001top.2	+	18	2500	c.1897G>A	c.(1897-1899)GAC>AAC	p.D633N	UBE3B_uc001toq.2_Missense_Mutation_p.D633N|UBE3B_uc001tos.2_Missense_Mutation_p.D60N|UBE3B_uc001too.1_RNA|UBE3B_uc009zvj.1_Missense_Mutation_p.D633N	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	633					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						ACTCGACAGGGACAGAAAACG	0.473													3	25					0	0	0.004672	0	0
OR4K17	390436	broad.mit.edu	37	14	20586099	20586099	+	Silent	SNP	C	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr14:20586099C>A	uc001vwo.1	+	1	534	c.534C>A	c.(532-534)ACC>ACA	p.T178T		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	150	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TTGTAGTGACCTCATGGCTCT	0.453													20	53					2.4624e-09	4.61992e-09	0.008871	1	0
C14orf115	55237	broad.mit.edu	37	14	74823852	74823852	+	Silent	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr14:74823852C>T	uc001xpw.3	+	2	557	c.366C>T	c.(364-366)GGC>GGT	p.G122G		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	122					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		ACCTCCAGGGCATGATCGACT	0.647													4	24					0	0	0.009096	0	0
TTC8	123016	broad.mit.edu	37	14	89338675	89338675	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr14:89338675G>C	uc010ath.2	+	13	1408	c.1274G>C	c.(1273-1275)GGA>GCA	p.G425A	TTC8_uc001xxl.2_Missense_Mutation_p.G170A|TTC8_uc010ati.2_Missense_Mutation_p.G211A|TTC8_uc001xxm.2_Missense_Mutation_p.G369A|TTC8_uc010atj.2_Missense_Mutation_p.G144A|TTC8_uc001xxi.2_Missense_Mutation_p.G409A|TTC8_uc001xxj.2_Missense_Mutation_p.G399A|TTC8_uc001xxk.2_Missense_Mutation_p.G369A	NM_198309	NP_938051	Q8TAM2	TTC8_HUMAN	tetratricopeptide repeat domain 8 isoform B	435	TPR 7.				cilium assembly|establishment of anatomical structure orientation|sensory processing	BBSome|centrosome|cilium membrane|microtubule basal body	protein binding				0						CTTTTGTAGGGAATAGGAGAT	0.488									Bardet-Biedl_syndrome				3	57					0	0	0.004672	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103405977	103405977	+	Silent	SNP	G	A	A	rs150855245	byFrequency	TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr14:103405977G>A	uc001ymi.1	-	34	5029	c.4797C>T	c.(4795-4797)GAC>GAT	p.D1599D		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	1599					actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		CCTGCATGCCGTCGCCTGGGC	0.612													38	84					0	0	0.004289	0	0
B2M	567	broad.mit.edu	37	15	45003745	45003745	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr15:45003745A>T	uc001zuc.2	+	1	61	c.1A>T	c.(1-3)ATG>TTG	p.M1L	B2M_uc010uek.1_Missense_Mutation_p.M1L|B2M_uc010bdx.1_Missense_Mutation_p.M1L	NM_004048	NP_004039	P61769	B2MG_HUMAN	beta-2-microglobulin precursor	1					antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	early endosome membrane|Golgi membrane|MHC class I protein complex	protein binding	p.M1V(2)		ovary(2)|skin(1)	3		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		TCGGGCCGAGATGTCTCGCTC	0.612													14	38					0	0	0.004990	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857593	9857593	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr16:9857593C>G	uc002czo.3	-	13	4356	c.3808G>C	c.(3808-3810)GAC>CAC	p.D1270H	GRIN2A_uc010uym.1_Missense_Mutation_p.D1270H|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1270	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGTGCCCAGTCCTGCTGGTAG	0.517													12	78					0	0	0.010729	0	0
UMOD	7369	broad.mit.edu	37	16	20348693	20348693	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr16:20348693G>A	uc002dgz.2	-	8	1789	c.1660C>T	c.(1660-1662)CGG>TGG	p.R554W	UMOD_uc002dha.2_Missense_Mutation_p.R554W|UMOD_uc002dhb.2_Missense_Mutation_p.R587W	NM_003361	NP_003352	P07911	UROM_HUMAN	uromodulin precursor	554	ZP.				cellular defense response|negative regulation of cell proliferation	anchored to membrane|apical plasma membrane|basolateral plasma membrane|cilium membrane|extrinsic to membrane|primary cilium|spindle pole	calcium ion binding			ovary(1)|skin(1)	2						CCAGCAAACCGGAACATCTGG	0.517													12	50					0	0	0.010729	0	0
SMG6	23293	broad.mit.edu	37	17	2202561	2202561	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr17:2202561C>T	uc002fub.1	-	2	1541	c.1486G>A	c.(1486-1488)GCA>ACA	p.A496T	SMG6_uc002fud.1_Missense_Mutation_p.A465T	NM_017575	NP_060045	Q86US8	EST1A_HUMAN	Smg-6 homolog, nonsense mediated mRNA decay	496	Interaction with telomeric DNA.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation|telomere maintenance	chromosome, telomeric region|cytosol|nucleolus|telomerase holoenzyme complex	endoribonuclease activity|metal ion binding|protein binding|telomeric DNA binding			central_nervous_system(2)|lung(1)|kidney(1)	4						TAGTAAGATGCCTGAGCCTGG	0.502													53	207					0	0	0.014410	0	0
MYH8	4626	broad.mit.edu	37	17	10304723	10304723	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr17:10304723C>T	uc002gmm.2	-	24	3072	c.2977G>A	c.(2977-2979)GCA>ACA	p.A993T	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	993	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						GACAGTTTTGCAATGGTTTCA	0.458									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				11	112					0	0	0.010729	0	0
RICH2	9912	broad.mit.edu	37	17	12883489	12883489	+	Silent	SNP	G	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr17:12883489G>T	uc002gnr.3	+	19	2205	c.1878G>T	c.(1876-1878)CCG>CCT	p.P626P	RICH2_uc010vvk.1_Silent_p.P626P|RICH2_uc010vvl.1_Silent_p.P620P|RICH2_uc002gns.3_Silent_p.P420P|RICH2_uc010vvm.1_Silent_p.P620P|RICH2_uc010vvn.1_Intron	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	626					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						GAGCTCAGCCGGGCGCCAGCC	0.647													5	40					3.59834e-05	6.44429e-05	0.001168	1	0
Unknown	0	broad.mit.edu	37	17	40180231	40180231	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr17:40180231C>T	uc002hyu.2	-	2	157	c.14G>A	c.(13-15)CGA>CAA	p.R5Q						RecName: Full=Zinc finger protein 385C;																		GGGAGCCCCTCGCTGACCTTC	0.706													6	90					0	0	0.001168	0	0
TANC2	26115	broad.mit.edu	37	17	61278279	61278279	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr17:61278279C>T	uc002jal.3	+	5	531	c.508C>T	c.(508-510)CCA>TCA	p.P170S	TANC2_uc010wpe.1_Missense_Mutation_p.P80S	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	170							binding			ovary(2)	2						TGTTACTAGTCCAACCTCTAC	0.443													22	56					0	0	0.010504	0	0
SEC14L1	6397	broad.mit.edu	37	17	75210034	75210034	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr17:75210034G>A	uc002jto.2	+	17	2344	c.2077G>A	c.(2077-2079)GGC>AGC	p.G693S	SEC14L1_uc010dhc.2_Missense_Mutation_p.G693S|SEC14L1_uc010wth.1_Missense_Mutation_p.G693S|SEC14L1_uc002jtm.2_Missense_Mutation_p.G693S|SEC14L1_uc010wti.1_Missense_Mutation_p.G659S|SEC14L1_uc010wtj.1_3'UTR|SEC14L1_uc002jtr.2_3'UTR	NM_003003	NP_002994	Q92503	S14L1_HUMAN	SEC14 (S. cerevisiae)-like 1 isoform a	693					transport	Golgi apparatus|integral to membrane	binding			ovary(2)	2						CAGCCACAGCGGCTTCTCCCA	0.657													21	104					0	0	0.002780	0	0
LAMA1	284217	broad.mit.edu	37	18	6943282	6943282	+	Silent	SNP	A	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr18:6943282A>C	uc002knm.2	-	62	9058	c.8964T>G	c.(8962-8964)CGT>CGG	p.R2988R	LAMA1_uc002knk.2_Silent_p.R318R|LAMA1_uc002knl.2_Silent_p.R441R|LAMA1_uc010wzj.1_Silent_p.R2464R	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2988	Laminin G-like 5.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCAGAGTGATACGGTGTTTGC	0.493													19	122					0	0	0.007413	0	0
CTAGE1	64693	broad.mit.edu	37	18	19996184	19996184	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr18:19996184G>C	uc002ktv.1	-	1	1695	c.1591C>G	c.(1591-1593)CCA>GCA	p.P531A		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	531						integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					GGATTCCCTGGGCCTCTGGAG	0.527													6	89					0	0	0.001984	0	0
ATP9B	374868	broad.mit.edu	37	18	77067094	77067094	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr18:77067094G>A	uc002lmx.2	+	15	1647	c.1633G>A	c.(1633-1635)GTG>ATG	p.V545M	ATP9B_uc002lmv.1_RNA|ATP9B_uc002lmw.1_Missense_Mutation_p.V545M|ATP9B_uc002lmz.1_Missense_Mutation_p.V239M	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	545	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		CCATGAAGCCGTGAAAGCCAT	0.507													14	50					0	0	0.002450	0	0
LRRC8E	80131	broad.mit.edu	37	19	7965628	7965628	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr19:7965628G>A	uc002mir.2	+	3	2322	c.2221G>A	c.(2221-2223)GTG>ATG	p.V741M		NM_025061	NP_079337	Q6NSJ5	LRC8E_HUMAN	leucine rich repeat containing 8 family, member	741	LRR 10.					integral to membrane				lung(1)|pancreas(1)	2						CTCGCCCCACGTGGGTGCCCT	0.642													5	105					0	0	0.000602	0	0
OR2Z1	284383	broad.mit.edu	37	19	8842005	8842005	+	Silent	SNP	G	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr19:8842005G>T	uc010xkg.1	+	1	615	c.615G>T	c.(613-615)CTG>CTT	p.L205L		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	205	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						CAGGGGTGCTGATCCTAATGC	0.567											OREG0007662	type=TRANSCRIPTION FACTOR BINDING SITE|Gene=OR2Z1|TFbs=REST|Dataset=NRSF/REST ChIPSeq sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	7	90					2.0095e-06	3.69973e-06	0.001984	1	0
ZNF317	57693	broad.mit.edu	37	19	9271505	9271505	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr19:9271505G>T	uc002mku.2	+	7	1459	c.1184G>T	c.(1183-1185)TGC>TTC	p.C395F	ZNF317_uc002mkv.2_Missense_Mutation_p.C254F|ZNF317_uc002mkw.2_Missense_Mutation_p.C363F|ZNF317_uc002mkx.2_Missense_Mutation_p.C310F|ZNF317_uc002mky.2_Missense_Mutation_p.C278F	NM_020933	NP_065984	Q96PQ6	ZN317_HUMAN	zinc finger protein 317	395	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGTAAAGAATGCGGGAAATCC	0.517													4	41					2.56e-06	4.66963e-06	0.009096	1	0
ZNF85	7639	broad.mit.edu	37	19	21131712	21131712	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr19:21131712G>C	uc002npg.3	+	4	519	c.392G>C	c.(391-393)TGT>TCT	p.C131S	ZNF85_uc010ecn.2_Missense_Mutation_p.C66S|ZNF85_uc010eco.2_Missense_Mutation_p.C79S|ZNF85_uc002npi.2_Missense_Mutation_p.C72S	NM_003429	NP_003420	Q03923	ZNF85_HUMAN	zinc finger protein 85	131						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			central_nervous_system(1)	1						AAAGGAGGTTGTAATGGACTT	0.328													4	57					0	0	0.009096	0	0
ATP1A3	478	broad.mit.edu	37	19	42485697	42485697	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr19:42485697T>C	uc002osg.2	-	11	1548	c.1394A>G	c.(1393-1395)AAG>AGG	p.K465R	ATP1A3_uc010xwf.1_Missense_Mutation_p.K476R|ATP1A3_uc010xwg.1_Missense_Mutation_p.K435R|ATP1A3_uc010xwh.1_Missense_Mutation_p.K478R|ATP1A3_uc002osh.2_Missense_Mutation_p.K465R	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	465	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						AGCCACTTTCTTGTTGCGTTC	0.557													15	75					0	0	0.004007	0	0
GRIK5	2901	broad.mit.edu	37	19	42566747	42566747	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr19:42566747G>A	uc002osj.1	-	4	436	c.401C>T	c.(400-402)GCG>GTG	p.A134V	GRIK5_uc010eib.1_Missense_Mutation_p.A53V	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	134	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	GCTGACAGACGCGAAGCGAAG	0.602													11	141					0	0	0.001855	0	0
PNMAL1	55228	broad.mit.edu	37	19	46974137	46974137	+	Silent	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr19:46974137C>T	uc002peq.3	-	2	462	c.156G>A	c.(154-156)CCG>CCA	p.P52P	PNMAL1_uc002per.3_Silent_p.P52P	NM_018215	NP_060685	Q86V59	PNML1_HUMAN	PNMA-like 1 isoform a	52											0		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000166)|all cancers(93;0.0014)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		gcacgcggtacgggcccagtg	0													9	41					0	0	0.004482	0	0
NLRP2	55655	broad.mit.edu	37	19	55489137	55489137	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr19:55489137C>T	uc002qij.2	+	4	429	c.343C>T	c.(343-345)CGA>TGA	p.R115*	NLRP2_uc010yfp.1_Nonsense_Mutation_p.R92*|NLRP2_uc010esn.2_Intron|NLRP2_uc010eso.2_Nonsense_Mutation_p.R115*|NLRP2_uc010esp.2_Nonsense_Mutation_p.R115*	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	115					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		ACGGAAAGAACGACCACCTCT	0.552													5	93					0	0	0.000602	0	0
SLC8A1	6546	broad.mit.edu	37	2	40366564	40366564	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr2:40366564A>G	uc002rrx.2	-	9	2546	c.2522T>C	c.(2521-2523)GTC>GCC	p.V841A	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Missense_Mutation_p.V836A|SLC8A1_uc002rrz.2_Missense_Mutation_p.V828A|SLC8A1_uc002rsa.2_Missense_Mutation_p.V805A|SLC8A1_uc002rsd.3_Missense_Mutation_p.V805A	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	841	Helical; (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	TCCAAGTGCGACGAACACGAC	0.453													4	40					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	2	90008114	90008114	+	RNA	SNP	A	G	G			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr2:90008114A>G	uc010fhm.2	+	9		c.1287A>G								Parts of antibodies, mostly variable regions.																		CAGCCTGAAGATGTTGCAACT	0.502													3	63					0	0	0.004672	0	0
STEAP3	55240	broad.mit.edu	37	2	120020788	120020788	+	Silent	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr2:120020788C>T	uc002tlp.2	+	6	1498	c.1341C>T	c.(1339-1341)GCC>GCT	p.A447A	STEAP3_uc002tlq.2_Silent_p.A457A|STEAP3_uc002tlr.2_Silent_p.A447A|STEAP3_uc010fle.2_3'UTR	NM_018234	NP_060704	Q658P3	STEA3_HUMAN	dudulin 2 isoform b	447	Helical; (Potential).				apoptosis|cell cycle|cellular iron ion homeostasis|protein secretion|transferrin transport|transmembrane transport	endosome membrane|integral to membrane|multivesicular body	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			central_nervous_system(2)|skin(1)	3						TGGCCAAAGCCCTGTTTCTCC	0.647													9	100					0	0	0.006214	0	0
PRPF40A	55660	broad.mit.edu	37	2	153526811	153526811	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr2:153526811T>A	uc002tyh.3	-	15	1586	c.1564A>T	c.(1564-1566)ACT>TCT	p.T522S	PRPF40A_uc002tyg.3_5'Flank|PRPF40A_uc010zcd.1_Missense_Mutation_p.T469S	NM_017892	NP_060362	O75400	PR40A_HUMAN	formin binding protein 3	549	FF 3.				mRNA processing|RNA splicing	nuclear matrix|nuclear speck	protein binding				0						TCAGACCAAGTGGTAGAGTAT	0.368													6	31					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179616651	179616651	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr2:179616651T>C	uc002unb.2	-	46	10700	c.10476A>G	c.(10474-10476)ATA>ATG	p.I3492M	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGTAGATGATATTCTACTTG	0.378													65	119					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179640377	179640377	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr2:179640377T>G	uc010zfg.1	-	28	6438	c.6214A>C	c.(6214-6216)AGT>CGT	p.S2072R	TTN_uc010zfh.1_Missense_Mutation_p.S2026R|TTN_uc010zfi.1_Missense_Mutation_p.S2026R|TTN_uc010zfj.1_Missense_Mutation_p.S2026R|TTN_uc002unb.2_Missense_Mutation_p.S2072R|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2072							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATACTAGGACTTAGTTCAATC	0.458													10	94					0	0	0.008291	0	0
FRG1B	284802	broad.mit.edu	37	20	29625905	29625905	+	Missense_Mutation	SNP	T	C	C	rs137871677	by1000genomes	TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr20:29625905T>C	uc010ztl.1	+	2	91	c.59T>C	c.(58-60)CTT>CCT	p.L20P	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGAAAATATCTTGGTATAAAT	0.333													4	80					0	0	0.009096	0	0
SEMG1	6406	broad.mit.edu	37	20	43837052	43837052	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr20:43837052C>T	uc002xni.2	+	2	1171	c.1114C>T	c.(1114-1116)CGC>TGC	p.R372C	SEMG1_uc002xnj.2_Missense_Mutation_p.R312C|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Intron	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	372	58 AA repeat 2.				insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				TGTATCCCAACGCAGTATTTA	0.418													5	34					0	0	0.001168	0	0
MMP9	4318	broad.mit.edu	37	20	44640212	44640212	+	Splice_Site	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr20:44640212G>A	uc002xqz.2	+	6	843	c.824_splice	c.e6-1	p.R275_splice		NM_004994	NP_004985	P14780	MMP9_HUMAN	matrix metalloproteinase 9 preproprotein						collagen catabolic process|macrophage differentiation|positive regulation of keratinocyte migration|proteolysis	extracellular space|proteinaceous extracellular matrix	collagen binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)			Glucosamine(DB01296)|Marimastat(DB00786)|Minocycline(DB01017)|Simvastatin(DB00641)	CCTCGCCCCAGGACTCTACAC	0.557													4	97					0	0	0.009096	0	0
KCNG1	3755	broad.mit.edu	37	20	49620833	49620833	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr20:49620833C>T	uc002xwa.3	-	3	1580	c.1285G>A	c.(1285-1287)GAC>AAC	p.D429N		NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	429	Selectivity filter (By similarity).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						GGGACCATGTCGCCATAGCCC	0.627													16	93					0	0	0.004990	0	0
GNAS	2778	broad.mit.edu	37	20	57415675	57415675	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr20:57415675G>A	uc002xzt.2	+	1	881	c.514G>A	c.(514-516)GAC>AAC	p.D172N	GNASAS_uc002xzs.1_Intron|GNAS_uc002xzu.3_5'Flank|GNAS_uc010gjq.2_5'Flank	NM_016592	NP_057676	P63092	GNAS2_HUMAN	GNAS complex locus NESP55	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			GCGAAGCCCCGACGCCTCCCC	0.682			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			4	33					0	0	0.001168	0	0
SERPIND1	3053	broad.mit.edu	37	22	21134155	21134155	+	Silent	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr22:21134155C>T	uc002ztb.1	+	2	622	c.555C>T	c.(553-555)GAC>GAT	p.D185D	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Silent_p.D213D	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	185					blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	ATTTTAAAGACTTTGTTAATG	0.443													6	121					0	0	0.001168	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659813	24659813	+	RNA	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr22:24659813C>T	uc002zzs.3	+	7		c.3545C>T			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						ATCTGCGCACCCGGAGGTGGG	0.607													3	6					0	0	0.004672	0	0
PDGFB	5155	broad.mit.edu	37	22	39626222	39626222	+	Silent	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr22:39626222G>A	uc003axf.2	-	5	1457	c.468C>T	c.(466-468)ATC>ATT	p.I156I	PDGFB_uc003axe.2_Silent_p.I141I	NM_002608	NP_002599	P01127	PDGFB_HUMAN	platelet-derived growth factor beta isoform 1	156					activation of protein kinase B activity|cellular response to mycophenolic acid|embryonic placenta development|heart development|hemopoiesis|metanephric glomerular mesangial cell development|monocyte chemotaxis|negative regulation of phosphatidylinositol biosynthetic process|negative regulation of platelet activation|negative regulation of transcription, DNA-dependent|paracrine signaling|peptidyl-serine phosphorylation|peptidyl-tyrosine phosphorylation|platelet activation|platelet degranulation|positive regulation of blood vessel endothelial cell migration|positive regulation of calcium ion import|positive regulation of cell division|positive regulation of chemotaxis|positive regulation of cyclin-dependent protein kinase activity|positive regulation of DNA biosynthetic process|positive regulation of DNA replication|positive regulation of endothelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|positive regulation of glomerular filtration|positive regulation of glomerular mesangial cell proliferation|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein autophosphorylation|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription, DNA-dependent|reactive oxygen species metabolic process|transforming growth factor beta receptor signaling pathway	basolateral plasma membrane|cell surface|endoplasmic reticulum lumen|extracellular region|Golgi membrane|platelet alpha granule lumen	collagen binding|eukaryotic cell surface binding|growth factor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein heterodimerization activity|protein homodimerization activity|superoxide-generating NADPH oxidase activator activity		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(1)	373	Melanoma(58;0.04)				Becaplermin(DB00102)	GCACAATCTCGATCTTTCTCA	0.582			T	COL1A1	DFSP								7	88					0	0	0.001984	0	0
TNRC6B	23112	broad.mit.edu	37	22	40706900	40706900	+	Silent	SNP	T	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr22:40706900T>C	uc011aor.1	+	17	4549	c.4338T>C	c.(4336-4338)GGT>GGC	p.G1446G	TNRC6B_uc003aym.2_Silent_p.G642G|TNRC6B_uc003ayn.3_Silent_p.G1336G|TNRC6B_uc003ayo.2_Silent_p.G1193G	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	1446					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						ACACACTGGGTGGCCATACGG	0.507													5	41					0	0	0.000602	0	0
EP300	2033	broad.mit.edu	37	22	41573889	41573889	+	Silent	SNP	C	G	G			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr22:41573889C>G	uc003azl.3	+	31	6569	c.6174C>G	c.(6172-6174)CTC>CTG	p.L2058L		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	2058	Interaction with HTLV-1 Tax.|Interaction with NCOA2.				apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						TGCGGACTCTCAGGTCTCCCA	0.552			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				4	191					0	0	0.009096	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64526833	64526833	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr3:64526833G>A	uc003dmg.2	-	36	5491	c.5459C>T	c.(5458-5460)ACG>ATG	p.T1820M	ADAMTS9_uc011bfo.1_Missense_Mutation_p.T1792M|ADAMTS9_uc011bfp.1_Missense_Mutation_p.T731M	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1820	GON.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		CCCAGCGGCCGTGTAATCCTT	0.468													11	454					0	0	0.002450	0	0
C3orf26	84319	broad.mit.edu	37	3	99891184	99891184	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr3:99891184G>C	uc003dtl.2	+	8	747	c.604G>C	c.(604-606)GAG>CAG	p.E202Q		NM_032359	NP_115735	Q9BQ75	CC026_HUMAN	hypothetical protein LOC84319	202							ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(1)	1						AAAGTTGCTGGAGAAGCGTGT	0.443													9	66					0	0	0.006214	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125844474	125844474	+	Silent	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr3:125844474C>T	uc003eim.1	-	15	1975	c.1785G>A	c.(1783-1785)GTG>GTA	p.V595V	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Silent_p.V494V	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	595	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	CAGGCTTGATCACCACTGTGT	0.582													5	71					0	0	0.001984	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125844486	125844486	+	Silent	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr3:125844486C>T	uc003eim.1	-	15	1963	c.1773G>A	c.(1771-1773)GGG>GGA	p.G591G	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Silent_p.G490G	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	591	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	CCACTGTGTTCCCGGCAGCCA	0.572													4	81					0	0	0.001168	0	0
PLD1	5337	broad.mit.edu	37	3	171455813	171455813	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr3:171455813T>C	uc003fhs.2	-	2	145	c.29A>G	c.(28-30)AAT>AGT	p.N10S	PLD1_uc003fht.2_Missense_Mutation_p.N10S	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	10					cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	TGCAGAGGTATTTACCCGTGG	0.433													17	29					0	0	0.007413	0	0
LPHN3	23284	broad.mit.edu	37	4	62845386	62845386	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr4:62845386C>T	uc010ihh.2	+	15	2880	c.2707C>T	c.(2707-2709)CGG>TGG	p.R903W	LPHN3_uc003hcq.3_Missense_Mutation_p.R903W|LPHN3_uc003hct.2_Missense_Mutation_p.R296W	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	890	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						TTGCTTTTTCCGGGGGCTCCA	0.493													64	180					0	0	0.014410	0	0
ANKRD56	345079	broad.mit.edu	37	4	77817552	77817552	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr4:77817552G>T	uc003hki.2	-	1	1451	c.1451C>A	c.(1450-1452)CCT>CAT	p.P484H		NM_001029870	NP_001025041	A6NEL2	ANR56_HUMAN	ankyrin repeat domain 56	484											0						CCAAGGCAAAGGCTTCAGGGG	0.592													6	152					3.59834e-05	6.44429e-05	0.001168	1	0
PDLIM5	10611	broad.mit.edu	37	4	95497040	95497040	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr4:95497040C>G	uc003hti.2	+	5	716	c.565C>G	c.(565-567)CAG>GAG	p.Q189E	PDLIM5_uc003htf.2_Intron|PDLIM5_uc003htg.2_Intron|PDLIM5_uc011cdx.1_Intron|PDLIM5_uc003hth.2_Intron|PDLIM5_uc003htj.2_Intron|PDLIM5_uc003htk.2_Intron|PDLIM5_uc011cdy.1_Missense_Mutation_p.Q67E	NM_006457	NP_006448	Q96HC4	PDLI5_HUMAN	PDZ and LIM domain 5 isoform a	189					regulation of dendritic spine morphogenesis|regulation of synaptogenesis	actin cytoskeleton|cell junction|cytosol|postsynaptic density|postsynaptic membrane|synaptosome	actin binding|actinin binding|protein kinase C binding|zinc ion binding			ovary(1)|skin(1)	2		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.84e-09)		TAGTGCTGACCAGTCTCCATC	0.562													6	98					0	0	0.001168	0	0
DNAH5	1767	broad.mit.edu	37	5	13759027	13759027	+	Silent	SNP	G	A	A	rs150773884	by1000genomes	TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr5:13759027G>A	uc003jfd.2	-	61	10389	c.10347C>T	c.(10345-10347)GCC>GCT	p.A3449A	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3449	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CATCCAACTCGGCCTGGGCTT	0.552									Kartagener_syndrome				11	174					0	0	0.013537	0	0
UGT3A1	133688	broad.mit.edu	37	5	35954471	35954471	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr5:35954471T>C	uc003jjv.1	-	7	1562	c.1405A>G	c.(1405-1407)ACG>GCG	p.T469A	UGT3A1_uc003jjw.1_RNA	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	469	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTGAGGTGCGTCGCTCCCCCA	0.612													6	22					0	0	0.001984	0	0
GDNF	2668	broad.mit.edu	37	5	37816054	37816054	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr5:37816054C>T	uc011cpi.1	-	3	535	c.335G>A	c.(334-336)AGG>AAG	p.R112K	GDNF_uc011cpc.1_Missense_Mutation_p.R34K|GDNF_uc011cpd.1_Missense_Mutation_p.R60K|GDNF_uc011cpe.1_Missense_Mutation_p.R86K|GDNF_uc011cpf.1_Missense_Mutation_p.R86K|GDNF_uc011cpg.1_Missense_Mutation_p.R129K|GDNF_uc011cph.1_Missense_Mutation_p.R103K	NM_000514	NP_000505	P39905	GDNF_HUMAN	glial cell derived neurotrophic factor isoform 1	112					adult locomotory behavior|anti-apoptosis|axon guidance|branching involved in ureteric bud morphogenesis|enteric nervous system development|mRNA stabilization|negative regulation of neuron apoptosis|neural crest cell migration|peristalsis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of dopamine secretion|positive regulation of monooxygenase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of ureteric bud formation|postganglionic parasympathetic nervous system development|regulation of dopamine uptake|signal transduction|sympathetic nervous system development	extracellular region	growth factor activity|protein homodimerization activity				0	all_lung(31;0.00118)					GTTTTTGCCCCTCTGGCCTCT	0.493													15	105					0	0	0.002450	0	0
LOC100133050	100133050	broad.mit.edu	37	5	99715528	99715528	+	RNA	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr5:99715528C>T	uc011cuw.1	-	4		c.382G>A				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						AGCGGACAGTCGAAGCCCTTC	0.607													5	7					0	0	0.000602	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140712490	140712490	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr5:140712490C>T	uc003lji.1	+	1	2239	c.2239C>T	c.(2239-2241)CGG>TGG	p.R747W	PCDHGA1_uc011dan.1_Missense_Mutation_p.R747W	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	747	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACGGGGTTCGGGCTTTCCT	0.627													5	114					0	0	0.000602	0	0
SH3RF2	153769	broad.mit.edu	37	5	145317757	145317757	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr5:145317757G>A	uc003lnt.2	+	2	504	c.266G>A	c.(265-267)CGC>CAC	p.R89H	SH3RF2_uc011dbl.1_Missense_Mutation_p.R89H	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	89							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGCTCCTTCCGCAGGCCTGGC	0.617													16	50					0	0	0.003163	0	0
GRIA1	2890	broad.mit.edu	37	5	153054142	153054142	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr5:153054142C>G	uc003lva.3	+	6	1147	c.782C>G	c.(781-783)ACT>AGT	p.T261S	GRIA1_uc003luy.3_Missense_Mutation_p.T261S|GRIA1_uc003luz.3_Missense_Mutation_p.T166S|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.T181S|GRIA1_uc011dcx.1_Missense_Mutation_p.T192S|GRIA1_uc011dcy.1_Missense_Mutation_p.T271S|GRIA1_uc011dcz.1_Missense_Mutation_p.T271S|GRIA1_uc010jia.1_Missense_Mutation_p.T241S	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	261	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TACACAGACACTATTCCGGCC	0.532													42	133					0	0	0.006999	0	0
DSP	1832	broad.mit.edu	37	6	7581095	7581095	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr6:7581095C>T	uc003mxp.1	+	23	4951	c.4672C>T	c.(4672-4674)CGG>TGG	p.R1558W	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1558	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GGATATCACGCGGTTCCAGAA	0.517													16	120					0	0	0.004007	0	0
TRIM27	5987	broad.mit.edu	37	6	28871870	28871870	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr6:28871870G>C	uc003nlr.2	-	8	1878	c.1519C>G	c.(1519-1521)CAT>GAT	p.H507D	TRIM27_uc003nls.2_3'UTR|TRIM27_uc003nlt.1_3'UTR	NM_006510	NP_006501	P14373	TRI27_HUMAN	ret finger protein	507					cell proliferation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|protein trimerization|spermatogenesis|transcription, DNA-dependent	cytoplasm|integral to plasma membrane|membrane fraction|nuclear membrane|PML body	DNA binding|protein binding|transmembrane receptor protein tyrosine kinase activity|zinc ion binding			ovary(1)	1						TCCATGGAATGACCATGATTC	0.527			T	RET	papillary thyroid								7	97					0	0	0.003080	0	0
TCP11	6954	broad.mit.edu	37	6	35108611	35108611	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr6:35108611G>T	uc003okd.2	-	2	257	c.76C>A	c.(76-78)CCT>ACT	p.P26T	TCP11_uc003ojz.1_5'UTR|TCP11_uc003oka.2_5'UTR|TCP11_uc003okb.2_5'UTR|TCP11_uc003okc.2_5'UTR|TCP11_uc011dsu.1_Missense_Mutation_p.P13T|TCP11_uc011dsv.1_Intron|TCP11_uc011dsw.1_Intron	NM_001093728	NP_001087197	Q8WWU5	TCP11_HUMAN	t-complex 11 isoform 1	13					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(3)|skin(2)	5						GAGTCGCCAGGATATTTCGGG	0.622													7	34					0.000157383	0.000274376	0.003080	1	0
SLC26A8	116369	broad.mit.edu	37	6	35911728	35911728	+	Silent	SNP	G	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr6:35911728G>T	uc003olm.2	-	20	2973	c.2862C>A	c.(2860-2862)CGC>CGA	p.R954R	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Silent_p.R536R|SLC26A8_uc003oln.2_Silent_p.R954R|SLC26A8_uc003oll.2_Silent_p.R849R	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	954	Interaction with RACGAP1.|Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						CCATAGGATGGCGTCTCCTCT	0.488													26	136					1.33986e-20	2.6134e-20	0.004656	1	0
MED20	9477	broad.mit.edu	37	6	41874865	41874865	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr6:41874865T>A	uc003ork.2	-	4	705	c.584A>T	c.(583-585)GAA>GTA	p.E195V	MED20_uc003orj.2_Missense_Mutation_p.E130V|MED20_uc011duh.1_3'UTR|MED20_uc011dui.1_RNA|MED20_uc011duj.1_Missense_Mutation_p.E130V	NM_004275	NP_004266	Q9H944	MED20_HUMAN	Trf (TATA binding protein-related	195					regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	mediator complex	DNA-directed RNA polymerase activity|protein binding				0	Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000367)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GTTGAAGAGTTCCATGTACTG	0.572													37	50					0	0	0.004878	0	0
SYNE1	23345	broad.mit.edu	37	6	152772230	152772230	+	Silent	SNP	G	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr6:152772230G>T	uc010kiw.2	-	26	3740	c.3138C>A	c.(3136-3138)ACC>ACA	p.T1046T	SYNE1_uc003qot.3_Silent_p.T1053T|SYNE1_uc003qou.3_Silent_p.T1046T|SYNE1_uc010kjb.1_Silent_p.T1029T|SYNE1_uc003qow.2_Silent_p.T341T|SYNE1_uc003qox.1_Silent_p.T562T	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1046	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GCATCAGCTTGGTCTCTCGAT	0.463										HNSCC(10;0.0054)			6	119					8.12818e-05	0.000142969	0.001984	1	0
HOXA2	3199	broad.mit.edu	37	7	27140362	27140362	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr7:27140362G>A	uc003syh.2	-	2	1389	c.1114C>T	c.(1114-1116)CAG>TAG	p.Q372*		NM_006735	NP_006726	O43364	HXA2_HUMAN	homeobox A2	372						nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						TTCAGATGCTGCAAGTCGATT	0.403													12	153					0	0	0.010729	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31126128	31126128	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr7:31126128A>G	uc003tca.1	+	10	1023	c.800A>G	c.(799-801)TAC>TGC	p.Y267C	ADCYAP1R1_uc003tcb.1_Missense_Mutation_p.Y246C|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.Y267C|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.Y267C|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.Y267C|ADCYAP1R1_uc003tcf.1_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	267	Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						AGATACTTCTACTGGTACACC	0.527													28	60					0	0	0.006320	0	0
NEUROD6	63974	broad.mit.edu	37	7	31378867	31378867	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr7:31378867A>C	uc003tch.2	-	2	369	c.16T>G	c.(16-18)TTT>GTT	p.F6V		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	6					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						GACTCATCAAACGGTAGTGTT	0.338													9	260					0	0	0.006214	0	0
TFEC	22797	broad.mit.edu	37	7	115624450	115624450	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr7:115624450G>T	uc003vhj.1	-	2	230	c.46C>A	c.(46-48)CAA>AAA	p.Q16K	TFEC_uc003vhk.1_Missense_Mutation_p.Q16K|TFEC_uc003vhl.3_Missense_Mutation_p.Q16K|TFEC_uc011kmw.1_Missense_Mutation_p.Q106K	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	16	Necessary for transcriptional transactivation.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			ACTGCAGGTTGTGACCATTTA	0.483													62	63					1.48873e-21	2.93279e-21	0.014410	1	0
TRPV5	56302	broad.mit.edu	37	7	142627261	142627261	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr7:142627261T>C	uc003wby.1	-	3	505	c.241A>G	c.(241-243)ACG>GCG	p.T81A	TRPV5_uc003wbz.2_Missense_Mutation_p.T81A	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	81	Cytoplasmic (Potential).|ANK 2.				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					TGCAGCGCCGTCTCCCCCAGG	0.587													5	94					0	0	0.000602	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110477062	110477062	+	Silent	SNP	C	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr8:110477062C>T	uc003yne.2	+	49	8105	c.8001C>T	c.(7999-8001)GCC>GCT	p.A2667A		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2667	Extracellular (Potential).|PbH1 3.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ATGGAGGTGCCCTTCAGTTCC	0.443										HNSCC(38;0.096)			11	80					0	0	0.008291	0	0
TSNARE1	203062	broad.mit.edu	37	8	143425673	143425673	+	Silent	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr8:143425673G>A	uc003ywk.2	-	4	517	c.399C>T	c.(397-399)ACC>ACT	p.T133T	TSNARE1_uc011lju.1_Silent_p.T133T|TSNARE1_uc003ywj.2_Silent_p.T133T|TSNARE1_uc003ywl.3_Intron	NM_145003	NP_659440	Q96NA8	TSNA1_HUMAN	t-SNARE domain containing 1	133					vesicle-mediated transport	integral to membrane					0	all_cancers(97;7.39e-11)|all_epithelial(106;8.98e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000332)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CCAGCACCTCGGTCTCCTGCG	0.682													5	36					0	0	0.000602	0	0
TMEM8B	51754	broad.mit.edu	37	9	35853764	35853764	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr9:35853764G>C	uc003zym.2	+	14	2361	c.1346G>C	c.(1345-1347)TGC>TCC	p.C449S	TMEM8B_uc003zyo.2_Missense_Mutation_p.C449S	NM_001042589	NP_001036054	A6NDV4	TMM8B_HUMAN	transmembrane protein 8B isoform a	449	Cytoplasmic (Potential).				cell-matrix adhesion|regulation of growth|regulation of mitotic cell cycle	cell surface|endoplasmic reticulum|integral to membrane|mitochondrion|nucleus|plasma membrane	protein binding			ovary(1)	1						TACCAGCTATGCATCAACGAG	0.677													12	99					0	0	0.001855	0	0
PRUNE2	158471	broad.mit.edu	37	9	79321837	79321837	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr9:79321837C>G	uc010mpk.2	-	8	5477	c.5353G>C	c.(5353-5355)GAG>CAG	p.E1785Q	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1785					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GATCTCTTCTCCTTCTCCACT	0.443													4	25					0	0	0.009096	0	0
ZNF367	195828	broad.mit.edu	37	9	99150590	99150590	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr9:99150590G>A	uc004awf.2	-	5	1337	c.982C>T	c.(982-984)CGG>TGG	p.R328W		NM_153695	NP_710162	Q7RTV3	ZN367_HUMAN	zinc finger protein 367	328	Potential.				regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0167)				AGGCGCTCCCGCTGCTCCTGC	0.602													9	58					0	0	0.004482	0	0
RGS3	5998	broad.mit.edu	37	9	116241803	116241803	+	Missense_Mutation	SNP	C	G	G	rs138702068	by1000genomes	TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr9:116241803C>G	uc004bhq.2	+	5	657	c.448C>G	c.(448-450)CGG>GGG	p.R150G	RGS3_uc004bhr.2_Missense_Mutation_p.R38G|RGS3_uc004bhs.2_Silent_p.T4T	NM_144488	NP_652759	P49796	RGS3_HUMAN	regulator of G-protein signalling 3 isoform 6	150	C2.				inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	cytosol|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3						TGCCCAGGACCGGGTTCTGCT	0.587													7	130					0	0	0.001984	0	0
METTL11A	28989	broad.mit.edu	37	9	132395060	132395060	+	Silent	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr9:132395060G>A	uc004byd.1	+	2	272	c.78G>A	c.(76-78)ACG>ACA	p.T26T	METTL11A_uc010myw.1_RNA|METTL11A_uc011mbs.1_Silent_p.T26T	NM_014064	NP_054783	Q9BV86	NTM1A_HUMAN	methyltransferase like 11A	26					chromosome segregation|N-terminal peptidyl-proline dimethylation|N-terminal peptidyl-serine dimethylation|N-terminal peptidyl-serine trimethylation|spindle organization	nucleus	protein binding|protein methyltransferase activity				0						TCCCACCCACGGTGGACGGCA	0.547													13	89					0	0	0.013537	0	0
PTCHD1	139411	broad.mit.edu	37	X	23398084	23398084	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chrX:23398084C>G	uc004dal.3	+	2	736	c.728C>G	c.(727-729)TCC>TGC	p.S243C	PTCHD1_uc010nfu.1_Missense_Mutation_p.S243C	NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	243					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						TTTCAGAAATCCAACAGCAAA	0.507													15	138					0	0	0.007413	0	0
ERAS	3266	broad.mit.edu	37	X	48687675	48687675	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chrX:48687675G>A	uc004dky.1	+	1	393	c.142G>A	c.(142-144)GGC>AGC	p.G48S		NM_181532	NP_853510	Q7Z444	RASE_HUMAN	ES cell expressed Ras precursor	48	GTP (By similarity).				small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity			lung(4)|urinary_tract(1)	5						TGTGGTGGTGGGCGCCAGTGG	0.642													4	24					0	0	0.009096	0	0
SERPINA7	6906	broad.mit.edu	37	X	105277631	105277631	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chrX:105277631C>A	uc004eme.1	-	4	1124	c.1108G>T	c.(1108-1110)GTT>TTT	p.V370F	SERPINA7_uc010npd.2_Missense_Mutation_p.V370F	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	370					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	GAAAGTTCAACTTCAGGGACA	0.458													21	151					9.95505e-16	1.92269e-15	0.014323	1	0
HS6ST2	90161	broad.mit.edu	37	X	131763004	131763004	+	Silent	SNP	A	G	G			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chrX:131763004A>G	uc011mve.1	-	4	1481	c.1065T>C	c.(1063-1065)CCT>CCC	p.P355P	HS6ST2_uc011mvb.1_Silent_p.P249P|HS6ST2_uc011mvc.1_Silent_p.P209P|HS6ST2_uc011mvd.1_Silent_p.P395P|HS6ST2_uc011mva.1_Silent_p.P81P	NM_147175	NP_671704	Q96MM7	H6ST2_HUMAN	heparan sulfate 6-O-sulfotransferase 2 isoform	355	Lumenal (Potential).					integral to membrane	sulfotransferase activity				0	Acute lymphoblastic leukemia(192;0.000127)					CGGAGGTTGGAGGCCTTCCAT	0.572													2	10					0	0	0.004672	0	0
ATP11C	286410	broad.mit.edu	37	X	138856964	138856964	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chrX:138856964T>C	uc004faz.2	-	19	2209	c.2110A>G	c.(2110-2112)ACC>GCC	p.T704A	ATP11C_uc004fay.2_RNA|ATP11C_uc004fba.2_Missense_Mutation_p.T704A	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	ATPase, class VI, type 11C isoform a	704	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(5)|large_intestine(3)	8	Acute lymphoblastic leukemia(192;0.000127)					GTTTTTGTGGTTAGTTCTAAG	0.418													4	52					0	0	0.009096	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994100	140994100	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chrX:140994100C>A	uc004fbt.2	+	4	1196	c.910C>A	c.(910-912)CAG>AAG	p.Q304K	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	304							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GTCTCCTCTCCAGATTCCTGT	0.498										HNSCC(15;0.026)			18	123					6.94344e-10	1.31525e-09	0.006122	1	0
RCC2	55920	broad.mit.edu	37	1	17747311	17747311	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr1:17747311delC	uc001bal.2	-	6	805	c.758delG	c.(757-759)GGCfs	p.G253fs	RCC2_uc001bam.2_Frame_Shift_Del_p.G253fs	NM_001136204	NP_001129676	Q9P258	RCC2_HUMAN	regulator of chromosome condensation 2	253	RCC1 3.				cell division|mitotic prometaphase	chromosome, centromeric region|cytosol|microtubule|nucleolus|spindle					0		Colorectal(325;0.000147)|Breast(348;0.00122)|Renal(390;0.00145)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;7.69e-06)|COAD - Colon adenocarcinoma(227;1.19e-05)|Kidney(64;0.000189)|KIRC - Kidney renal clear cell carcinoma(64;0.00273)|STAD - Stomach adenocarcinoma(196;0.0135)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.19)		AATTGGCTGGCCGTTGTACAT	0.413													7	65	---	---	---	---					
CCDC30	728621	broad.mit.edu	37	1	43002200	43002201	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr1:43002200_43002201delAG	uc009vwk.1	+	2	155_156	c.45_46delAG	c.(43-48)AAAGAGfs	p.K15fs	CCDC30_uc001chm.2_5'UTR|CCDC30_uc001chn.2_Intron|CCDC30_uc010oju.1_RNA|CCDC30_uc001chp.2_Frame_Shift_Del_p.K15fs	NM_001080850	NP_001074319	Q5VVM6	CCD30_HUMAN	coiled-coil domain containing 30	15_16											0						AGTGGTCAAAAGAGAGAGAGAG	0.356													10	72	---	---	---	---					
ADAM15	8751	broad.mit.edu	37	1	155030138	155030139	+	Frame_Shift_Ins	INS	-	T	T			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr1:155030138_155030139insT	uc001fgr.1	+	13	1450_1451	c.1349_1350insT	c.(1348-1350)TCTfs	p.S450fs	ADAM15_uc001fgq.1_Frame_Shift_Ins_p.S135fs|ADAM15_uc010pet.1_Frame_Shift_Ins_p.S434fs|ADAM15_uc010peu.1_Frame_Shift_Ins_p.S467fs|ADAM15_uc001fgt.1_Frame_Shift_Ins_p.S450fs|ADAM15_uc010pev.1_Frame_Shift_Ins_p.S460fs|ADAM15_uc001fgs.1_Frame_Shift_Ins_p.S450fs|ADAM15_uc001fgu.1_Frame_Shift_Ins_p.S450fs|ADAM15_uc001fgw.1_Frame_Shift_Ins_p.S450fs|ADAM15_uc001fgv.1_Frame_Shift_Ins_p.S450fs|ADAM15_uc001fgx.1_Frame_Shift_Ins_p.S450fs|ADAM15_uc001fgz.1_RNA|ADAM15_uc001fgy.1_RNA|ADAM15_uc001fha.1_RNA|ADAM15_uc001fhb.1_5'Flank	NM_207197	NP_997080	Q13444	ADA15_HUMAN	a disintegrin and metalloproteinase domain 15	450	Disintegrin.|Extracellular (Potential).				angiogenesis|cell-matrix adhesion|collagen catabolic process|proteolysis	acrosomal vesicle|adherens junction|endomembrane system|flagellum|integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			central_nervous_system(3)|skin(2)|ovary(1)	6	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			TGCTGTGATTCTTTGACCTGCC	0.619													80	169	---	---	---	---					
SLAMF1	6504	broad.mit.edu	37	1	160589601	160589601	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr1:160589601delT	uc001fwl.3	-	5	1175	c.829delA	c.(829-831)AGCfs	p.S277fs	SLAMF1_uc010pjk.1_Intron|SLAMF1_uc010pjl.1_Intron|SLAMF1_uc010pjm.1_Intron	NM_003037	NP_003028	Q13291	SLAF1_HUMAN	signaling lymphocytic activation molecule family	277	Cytoplasmic (Potential).|Ig-like V-type.				interspecies interaction between organisms|lymphocyte activation|positive regulation of cell proliferation	integral to membrane	antigen binding|transmembrane receptor activity			ovary(1)|breast(1)	2	all_cancers(52;4.94e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			ATCGTAAGGCTTTTTTTTTCC	0.433													8	184	---	---	---	---					
FAM5B	57795	broad.mit.edu	37	1	177249666	177249666	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr1:177249666delT	uc001glf.2	+	8	1666	c.1354delT	c.(1354-1356)TGCfs	p.C452fs	FAM5B_uc001glg.2_Frame_Shift_Del_p.C347fs	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	452						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CCAATCTTCCTGCCAGGGCCC	0.607													17	39	---	---	---	---					
KCNG2	26251	broad.mit.edu	37	18	77623691	77623692	+	In_Frame_Ins	INS	-	GGC	GGC	rs71338073		TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr18:77623691_77623692insGGC	uc010xfl.1	+	1	24_25	c.24_25insGGC	c.(22-27)insGGC	p.13_14insG		NM_012283	NP_036415	Q9UJ96	KCNG2_HUMAN	potassium voltage-gated channel, subfamily G,	13_14	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of heart contraction|regulation of insulin secretion	voltage-gated potassium channel complex	delayed rectifier potassium channel activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;6.92e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0244)		CCTGCTccccgggcggcggcgg	0.614													4	5	---	---	---	---					
ZNF804A	91752	broad.mit.edu	37	2	185801896	185801896	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr2:185801896delT	uc002uph.2	+	4	2367	c.1773delT	c.(1771-1773)CATfs	p.H591fs		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	591						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						ACTGGTTCCATAAAAGTAGAA	0.308													15	84	---	---	---	---					
ALPP	250	broad.mit.edu	37	2	233243529	233243531	+	In_Frame_Del	DEL	TGC	-	-			TCGA-ER-A2NB-01A-12D-A196-08	TCGA-ER-A2NB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f0d5f98d-c677-482d-b00d-24946ad60a25	926ae523-c8bc-43ff-bd68-77b01d7cacc3	g.chr2:233243529_233243531delTGC	uc002vsq.2	+	1	182_184	c.17_19delTGC	c.(16-21)ATGCTG>ATG	p.L13del	ALPP_uc002vsr.2_5'Flank	NM_001632	NP_001623	P05187	PPB1_HUMAN	placental alkaline phosphatase preproprotein	13						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		GGGCCCTGCAtgctgctgctgct	0.542													8	103	---	---	---	---					
