Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CDC7	8317	broad.mit.edu	37	1	91967356	91967356	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr1:91967356T>A	uc001doe.2	+	2	248	c.83T>A	c.(82-84)TTA>TAA	p.L28*	CDC7_uc001dof.2_Nonsense_Mutation_p.L28*|CDC7_uc010osw.1_Nonsense_Mutation_p.L28*|CDC7_uc009wdc.2_Nonsense_Mutation_p.L28*	NM_003503	NP_003494	O00311	CDC7_HUMAN	cell division cycle 7	28					cell cycle checkpoint|cell division|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|positive regulation of cell proliferation|regulation of S phase	cytoplasm|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	5		all_lung(203;0.0165)|Lung NSC(277;0.0562)		all cancers(265;0.00108)|Epithelial(280;0.0184)|KIRC - Kidney renal clear cell carcinoma(1967;0.124)		GAAGGCTCTTTAAAAAAAAAC	0.403000													4	120					0	0	0.009096	0	0
ADIPOR2	79602	broad.mit.edu	37	12	1890190	1890190	+	Missense_Mutation	SNP	A	G	G			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr12:1890190A>G	uc001qjm.2	+	6	983	c.786A>G	c.(784-786)ATA>ATG	p.I262M	ADIPOR2_uc001qjn.2_Missense_Mutation_p.I262M	NM_024551	NP_078827	Q86V24	ADR2_HUMAN	adiponectin receptor 2	262	Helical; Name=4; (Potential).				fatty acid oxidation|hormone-mediated signaling pathway	integral to membrane	hormone binding|receptor activity				0	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000382)			CAGCCATTATAGTCTCCCAGT	0.443000													3	150					0	0	0.004672	0	0
LOC284232	284232	broad.mit.edu	37	13	19413025	19413025	+	RNA	SNP	A	G	G			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr13:19413025A>G	uc010tcj.1	-	1		c.33085T>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						AATAACCTGCACATCCATGCA	0.299000													3	10					0	0	0.004672	0	0
LOC284232	284232	broad.mit.edu	37	13	19413033	19413033	+	RNA	SNP	G	A	A			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr13:19413033G>A	uc010tcj.1	-	1		c.33077C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GCACATCCATGCACTAAAAAG	0.294000													3	6					0	0	0.004672	0	0
VASN	114990	broad.mit.edu	37	16	4431310	4431310	+	Silent	SNP	C	T	T			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr16:4431310C>T	uc002cwj.1	+	2	587	c.432C>T	c.(430-432)TTC>TTT	p.F144F	CORO7_uc002cwe.2_Intron|CORO7_uc002cwf.2_Intron|CORO7_uc002cwg.3_Intron|CORO7_uc002cwh.3_Intron|CORO7_uc010uxh.1_Intron|CORO7_uc010uxi.1_Intron|CORO7_uc002cwi.1_Intron|CORO7_uc010uxj.1_Intron|CORO7_uc010btp.1_Intron	NM_138440	NP_612449	Q6EMK4	VASN_HUMAN	slit-like 2 precursor	144	LRR 4.|Extracellular (Potential).			Missing (in Ref. 2; AAQ88665).		extracellular region|integral to membrane					0						CTGGTGCCTTCGACACGCTCG	0.677000													15	21					0	0	0.004990	0	0
MYH11	4629	broad.mit.edu	37	16	15826509	15826509	+	Missense_Mutation	SNP	C	T	T			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr16:15826509C>T	uc002ddy.2	-	27	3670	c.3563G>A	c.(3562-3564)CGG>CAG	p.R1188Q	MYH11_uc002ddv.2_Missense_Mutation_p.R1195Q|MYH11_uc002ddw.2_Missense_Mutation_p.R1188Q|MYH11_uc002ddx.2_Missense_Mutation_p.R1195Q|MYH11_uc010bvg.2_Missense_Mutation_p.R1020Q	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1188	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						CTCATGGGACCGCGTCTCTTC	0.572000			T	CBFB	AML								68	96					0	0	0.014410	0	0
SALL3	27164	broad.mit.edu	37	18	76755190	76755190	+	Missense_Mutation	SNP	G	A	A			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr18:76755190G>A	uc002lmt.2	+	2	3199	c.3199G>A	c.(3199-3201)GGT>AGT	p.G1067S	SALL3_uc010dra.2_Missense_Mutation_p.G602S	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	1067					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GGAAGTGAACGGTCACGGCAA	0.652000													34	51					0	0	0.003755	0	0
ZNF98	148198	broad.mit.edu	37	19	22574657	22574657	+	Silent	SNP	T	C	C			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr19:22574657T>C	uc002nqt.2	-	4	1502	c.1380A>G	c.(1378-1380)AAA>AAG	p.K460K		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	460					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				ATTTGTAGGGTTTCTCTCCAG	0.373000													3	58					0	0	0.009096	0	0
CD22	933	broad.mit.edu	37	19	35827206	35827206	+	Missense_Mutation	SNP	A	T	T			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr19:35827206A>T	uc010edt.2	+	4	757	c.680A>T	c.(679-681)AAG>ATG	p.K227M	CD22_uc010xst.1_Missense_Mutation_p.K55M|CD22_uc010edu.2_Missense_Mutation_p.K227M|CD22_uc010edv.2_Missense_Mutation_p.K227M|CD22_uc002nzb.3_Missense_Mutation_p.K227M|CD22_uc010edx.2_5'Flank	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	227	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	GCAGATGGGAAGTTCCTCTCC	0.582000													37	51					0	0	0.014410	0	0
PRX	57716	broad.mit.edu	37	19	40899883	40899883	+	Missense_Mutation	SNP	G	A	A			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr19:40899883G>A	uc002onr.2	-	7	4645	c.4376C>T	c.(4375-4377)GCG>GTG	p.A1459V	PRX_uc002onq.2_Missense_Mutation_p.A1320V|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	1459					axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TCAGACAGCCGCAGCCTGAGC	0.617000													4	127					0	0	0.001168	0	0
CGB7	94027	broad.mit.edu	37	19	49558229	49558229	+	Missense_Mutation	SNP	T	C	C			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr19:49558229T>C	uc002pmd.2	-	2	417	c.52A>G	c.(52-54)ACA>GCA	p.T18A	CGB_uc010yad.1_Intron|CGB8_uc002pmc.2_Intron|CGB7_uc002pme.2_Missense_Mutation_p.T18A	NM_033142	NP_149133	P01233	CGHB_HUMAN	chorionic gonadotropin, beta polypeptide 7	18			T -> A.		apoptosis|cell-cell signaling|cellular nitrogen compound metabolic process|female gamete generation|hormone biosynthetic process|peptide hormone processing|signal transduction	extracellular region|soluble fraction	hormone activity				0		all_epithelial(76;9.62e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000371)|OV - Ovarian serous cystadenocarcinoma(262;0.000503)|GBM - Glioblastoma multiforme(486;0.00518)|Epithelial(262;0.0427)	Choriogonadotropin alfa(DB00097)	GATGCCCATGTCCCGCCCATG	0.657000													3	123					0	0	0.001984	0	0
NPHP1	4867	broad.mit.edu	37	2	110905497	110905497	+	Missense_Mutation	SNP	C	T	T			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr2:110905497C>T	uc002tfn.3	-	13	1524	c.1430G>A	c.(1429-1431)CGC>CAC	p.R477H	NPHP1_uc002tfm.3_Missense_Mutation_p.R422H|NPHP1_uc002tfl.3_Missense_Mutation_p.R478H|NPHP1_uc002tfo.3_Missense_Mutation_p.R359H|NPHP1_uc010ywx.1_Missense_Mutation_p.R421H|NPHP1_uc010fjv.1_Missense_Mutation_p.R421H	NM_207181	NP_997064	O15259	NPHP1_HUMAN	nephrocystin 1 isoform 2	477					actin cytoskeleton organization|cell projection organization|cell-cell adhesion|excretion|retina development in camera-type eye|signal transduction|spermatid differentiation|visual behavior	adherens junction|cell-cell junction|cilium axoneme|cytoplasm|cytoskeleton|motile cilium|photoreceptor connecting cilium	protein binding|structural molecule activity			ovary(2)	2						ACATACATTGCGAATATAAGA	0.343000													35	53					0	0	0.004289	0	0
SCN2A	6326	broad.mit.edu	37	2	166246020	166246020	+	Missense_Mutation	SNP	C	T	T			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr2:166246020C>T	uc002udc.2	+	27	5994	c.5704C>T	c.(5704-5706)CGC>TGC	p.R1902C	SCN2A_uc002udd.2_Missense_Mutation_p.R1902C|SCN2A_uc002ude.2_Missense_Mutation_p.R1902C	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1902			R -> T (associated with autism).		myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	CACGTTGAAACGCAAACAAGA	0.433000													15	34					0	0	0.004007	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	G	G			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr2:207025358A>G	uc002vbf.1	+	3	285	c.127A>G	c.(127-129)AGC>GGC	p.S43G	NDUFS1_uc010ziq.1_5'Flank|NDUFS1_uc002vbe.2_5'Flank|NDUFS1_uc010zir.1_5'Flank|NDUFS1_uc010zis.1_5'Flank|NDUFS1_uc010zit.1_5'Flank|NDUFS1_uc010ziu.1_5'Flank|EEF1B2_uc002vbg.1_Missense_Mutation_p.S43G|EEF1B2_uc002vbh.1_Missense_Mutation_p.S43G|SNORD51_uc002vbi.1_5'Flank|SNORA41_uc002vbj.2_5'Flank	NM_001037663	NP_001032752	P24534	EF1B_HUMAN	eukaryotic translation elongation factor 1 beta	43	GST C-terminal.					cytosol|eukaryotic translation elongation factor 1 complex	protein binding|translation elongation factor activity				0						AGCCGTGTCCAGCCCACCGCC	0.468000													5	154					0	0	0.000602	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	A	A			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr2:207025366G>A	uc002vbf.1	+	3	293	c.135G>A	c.(133-135)CCG>CCA	p.P45P	NDUFS1_uc010ziq.1_5'Flank|NDUFS1_uc002vbe.2_5'Flank|NDUFS1_uc010zir.1_5'Flank|NDUFS1_uc010zis.1_5'Flank|NDUFS1_uc010zit.1_5'Flank|NDUFS1_uc010ziu.1_5'Flank|EEF1B2_uc002vbg.1_Silent_p.P45P|EEF1B2_uc002vbh.1_Silent_p.P45P|SNORD51_uc002vbi.1_5'Flank|SNORA41_uc002vbj.2_5'Flank	NM_001037663	NP_001032752	P24534	EF1B_HUMAN	eukaryotic translation elongation factor 1 beta	45	GST C-terminal.					cytosol|eukaryotic translation elongation factor 1 complex	protein binding|translation elongation factor activity				0						CCAGCCCACCGCCTGCCGACT	0.448000													5	157					0	0	0.000602	0	0
DSCAM	1826	broad.mit.edu	37	21	41648146	41648146	+	Missense_Mutation	SNP	A	G	G			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr21:41648146A>G	uc002yyq.1	-	11	2686	c.2234T>C	c.(2233-2235)GTT>GCT	p.V745A	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	745	Extracellular (Potential).|Ig-like C2-type 8.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATTGCTGAGAACTTGGATTCG	0.512000													31	41					0	0	0.012213	0	0
LOC96610	96610	broad.mit.edu	37	22	22663086	22663086	+	RNA	SNP	T	G	G	rs1054157	by1000genomes	TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr22:22663086T>G	uc011aim.1	+	29		c.1859T>G			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_RNA|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						AGCTGCCACATAAGTTGTCCT	0.299000													5	53					0	0	0.001168	0	0
ARFGAP3	26286	broad.mit.edu	37	22	43204776	43204776	+	Silent	SNP	A	C	C			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr22:43204776A>C	uc003bdd.2	-	13	1537	c.1317T>G	c.(1315-1317)GCT>GCG	p.A439A	ARFGAP3_uc010gzf.2_Silent_p.A395A	NM_014570	NP_055385	Q9NP61	ARFG3_HUMAN	ADP-ribosylation factor GTPase activating	439					intracellular protein transport|protein secretion|regulation of ARF GTPase activity|vesicle-mediated transport	cytosol|Golgi membrane	ARF GTPase activator activity|protein transporter activity|zinc ion binding			breast(1)	1						CCCTTACATCAGCCTGGGATT	0.488000													61	111					0	0	0.014410	0	0
FBLN1	2192	broad.mit.edu	37	22	45914606	45914606	+	Missense_Mutation	SNP	C	T	T			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr22:45914606C>T	uc003bgj.1	+	2	271	c.124C>T	c.(124-126)CGG>TGG	p.R42W	FBLN1_uc003bgg.1_Missense_Mutation_p.R42W|FBLN1_uc003bgh.2_Missense_Mutation_p.R42W|FBLN1_uc010gzz.2_Missense_Mutation_p.R42W|FBLN1_uc003bgi.1_Missense_Mutation_p.R42W	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	42	Anaphylatoxin-like 1.			HR -> SH (in Ref. 8; AA sequence).	interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		GGACGGACACCGGATGGCCAC	0.582000													20	20					0	0	0.003330	0	0
LOC220729	220729	broad.mit.edu	37	3	197348674	197348674	+	RNA	SNP	A	G	G	rs144273946	by1000genomes	TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr3:197348674A>G	uc011bug.1	-	4		c.417T>C			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_Intron					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						GGCTCTGTCCACCAAATGCAC	0.478000													3	156					0	0	0.004672	0	0
DAPP1	27071	broad.mit.edu	37	4	100774447	100774447	+	Missense_Mutation	SNP	T	C	C			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr4:100774447T>C	uc003hvf.3	+	4	521	c.431T>C	c.(430-432)GTT>GCT	p.V144A	DAPP1_uc011cek.1_Intron|DAPP1_uc010ilh.2_Missense_Mutation_p.V144A	NM_014395	NP_055210	Q9UN19	DAPP1_HUMAN	dual adaptor of phosphotyrosine and	144					signal transduction	cytoplasm|plasma membrane	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein tyrosine phosphatase activity				0				OV - Ovarian serous cystadenocarcinoma(123;7.04e-09)		TCTGTCCGGGTTCACACAGCA	0.448000													9	23					0	0	0.006214	0	0
ZNF827	152485	broad.mit.edu	37	4	146686225	146686225	+	Missense_Mutation	SNP	A	C	C			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr4:146686225A>C	uc003ikn.2	-	13	3193	c.3145T>G	c.(3145-3147)TGT>GGT	p.C1049G	ZNF827_uc003ikm.2_Missense_Mutation_p.C1049G|ZNF827_uc010iox.2_Missense_Mutation_p.C699G|ZNF827_uc003ikl.2_Missense_Mutation_p.C134G	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	1049	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					CACACATCACACTCAAACATC	0.493000													60	109					0	0	0.014410	0	0
CLCN3	1182	broad.mit.edu	37	4	170618538	170618538	+	Missense_Mutation	SNP	T	C	C			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr4:170618538T>C	uc003isi.2	+	9	1725	c.1216T>C	c.(1216-1218)TTT>CTT	p.F406L	CLCN3_uc003ish.2_Missense_Mutation_p.F406L|CLCN3_uc011cjz.1_Missense_Mutation_p.F389L|CLCN3_uc011cka.1_Missense_Mutation_p.F379L|CLCN3_uc003isj.1_Missense_Mutation_p.F379L	NM_001829	NP_001820	P51790	CLCN3_HUMAN	chloride channel 3 isoform b	406	Helical; (By similarity).				endosomal lumen acidification	cell surface|early endosome membrane|Golgi membrane|integral to membrane|late endosome membrane|transport vesicle membrane	antiporter activity|ATP binding|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|voltage-gated chloride channel activity			breast(2)|ovary(1)	3		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0233)|LUSC - Lung squamous cell carcinoma(193;0.131)		TTGGGGAGCCTTTTTCATTAG	0.438000													3	165					0	0	0.004672	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140768251	140768251	+	Missense_Mutation	SNP	C	T	T			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr5:140768251C>T	uc003lkc.1	+	1	800	c.800C>T	c.(799-801)ACG>ATG	p.T267M	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.T267M	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	267	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGACTGCCACGGACCAGGAT	0.498000													85	121					0	0	0.014410	0	0
EYA1	2138	broad.mit.edu	37	8	72233985	72233985	+	Silent	SNP	G	A	A			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr8:72233985G>A	uc003xys.3	-	5	689	c.402C>T	c.(400-402)TAC>TAT	p.Y134Y	EYA1_uc003xyr.3_Silent_p.Y134Y|EYA1_uc003xyt.3_Silent_p.Y101Y|EYA1_uc010lzf.2_Silent_p.Y61Y|EYA1_uc003xyu.2_Silent_p.Y134Y|EYA1_uc011lfe.1_Silent_p.Y133Y|EYA1_uc003xyv.2_Silent_p.Y17Y	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	134					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			AGGAAATGCCGTACGGCTGTC	0.483000													4	166					0	0	0.000602	0	0
ZFPM2	23414	broad.mit.edu	37	8	106801107	106801107	+	Missense_Mutation	SNP	C	A	A			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr8:106801107C>A	uc003ymd.2	+	6	717	c.694C>A	c.(694-696)CAG>AAG	p.Q232K	ZFPM2_uc011lhs.1_5'UTR	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	232					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GCTGCTTCCTCAGCAAGCTGC	0.498000													108	22					1.04646e-50	1.43889e-50	0.014410	1	0
HRCT1	646962	broad.mit.edu	37	9	35906559	35906559	+	Missense_Mutation	SNP	A	C	C			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr9:35906559A>C	uc003zyr.1	+	1	371	c.275A>C	c.(274-276)CAC>CCC	p.H92P	LOC158376_uc003zys.1_5'Flank	NM_001039792	NP_001034881	Q6UXD1	HRCT1_HUMAN	histidine rich carboxyl terminus 1	92	His-rich.					integral to membrane					0						caccaccaccacccccgccac	0.393000													6	16					0	0	0.006122	0	0
KIAA1210	57481	broad.mit.edu	37	X	118221921	118221921	+	Missense_Mutation	SNP	G	C	C			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chrX:118221921G>C	uc004era.3	-	11	3272	c.3272C>G	c.(3271-3273)ACC>AGC	p.T1091S		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1091										ovary(4)|skin(1)	5						AAATTTAGGGGTCACCCATGG	0.493000													118	160					0	0	0.014410	0	0
SEPT6	23157	broad.mit.edu	37	X	118783980	118783980	+	Missense_Mutation	SNP	C	T	T			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chrX:118783980C>T	uc004erv.2	-	5	875	c.610G>A	c.(610-612)GAG>AAG	p.E204K	SEPT6_uc010nqk.2_RNA|SEPT6_uc004ers.2_Missense_Mutation_p.E204K|SEPT6_uc004ert.2_Missense_Mutation_p.E204K|SEPT6_uc004eru.2_Missense_Mutation_p.E204K|SEPT6_uc004erw.2_Missense_Mutation_p.E146K|SEPT6_uc011mtv.1_Missense_Mutation_p.E146K|SEPT6_uc011mtw.1_Missense_Mutation_p.E234K	NM_015129	NP_055944	Q14141	SEPT6_HUMAN	septin 6 isoform B	204					cell cycle|cytokinesis|interspecies interaction between organisms	cleavage furrow|condensed chromosome kinetochore|midbody|septin complex|spindle	GTP binding|protein binding			lung(1)|ovary(1)|prostate(1)|kidney(1)	4						CTGACAAGCTCGCTGGTGATT	0.473000													108	161					0	0	0.014410	0	0
TREX2	11219	broad.mit.edu	37	X	152710664	152710664	+	Silent	SNP	G	A	A			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chrX:152710664G>A	uc010nue.1	-	3	467	c.351C>T	c.(349-351)AGC>AGT	p.S117S	TREX2_uc010nud.1_Silent_p.S75S|TREX2_uc011myp.1_Silent_p.S75S|HAUS7_uc004fhl.2_RNA|HAUS7_uc004fhm.2_RNA	NM_080701	NP_542432	Q9BQ50	TREX2_HUMAN	three prime repair exonuclease 2	118					DNA repair	nucleus	3'-5'-exodeoxyribonuclease activity|exodeoxyribonuclease III activity|nucleic acid binding			large_intestine(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CGGTGATCTCGCTGGCCTTGG	0.682000								Editing_and_processing_nucleases					3	53					0	0	0.009096	0	0
DUSP8	1850	broad.mit.edu	37	11	1586978	1586979	+	Frame_Shift_Ins	INS	-	C	C			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr11:1586978_1586979insC	uc001lts.2	-	2	206_207	c.78_79insG	c.(76-81)GGGCCGfs	p.G26fs		NM_004420	NP_004411	Q13202	DUS8_HUMAN	dual specificity phosphatase 8	26_27	Rhodanese.				inactivation of MAPK activity	cytoplasm|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		all_epithelial(84;0.000134)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000621)|Lung(200;0.0687)|LUSC - Lung squamous cell carcinoma(625;0.0825)		ATGACCAGCGGCCCCCCAGGCC	0.663													7	358	---	---	---	---					
KSR1	8844	broad.mit.edu	37	17	25910015	25910016	+	Frame_Shift_Ins	INS	-	C	C			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr17:25910015_25910016insC	uc010crg.2	+	5	898_899	c.453_454insC	c.(451-456)ACGCCCfs	p.T151fs	KSR1_uc002gzj.1_RNA	NM_014238	NP_055053	Q8IVT5	KSR1_HUMAN	kinase suppressor of ras	286_287	Poly-Pro.				Ras protein signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(1)	4	Lung NSC(42;0.00836)		BRCA - Breast invasive adenocarcinoma(3;0.00122)	UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		CACCACGGACGCCCCCCCCACC	0.678													8	26	---	---	---	---					
PMEPA1	56937	broad.mit.edu	37	20	56227348	56227349	+	Frame_Shift_Ins	INS	-	G	G			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr20:56227348_56227349insG	uc002xyq.2	-	4	1017_1018	c.624_625insC	c.(622-627)CCCAGCfs	p.P208fs	PMEPA1_uc002xyr.2_Frame_Shift_Ins_p.P158fs|PMEPA1_uc002xys.2_Frame_Shift_Ins_p.P173fs|PMEPA1_uc002xyt.2_Frame_Shift_Ins_p.P158fs	NM_020182	NP_064567	Q969W9	PMEPA_HUMAN	transmembrane prostate androgen-induced protein	208_209	Cytoplasmic (Potential).				androgen receptor signaling pathway	integral to membrane|plasma membrane	WW domain binding			pancreas(1)	1						GAGTTACTGCTGGGGGGGCAGG	0.683													7	130	---	---	---	---					
SREBF2	6721	broad.mit.edu	37	22	42262949	42262951	+	In_Frame_Del	DEL	GCA	-	-			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr22:42262949_42262951delGCA	uc003bbi.2	+	2	372_374	c.203_205delGCA	c.(202-207)GGCAGC>GGC	p.S74del	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	74	Gly/Pro/Ser-rich.|Cytoplasmic (Potential).				cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						ggcagcagtggcagcagcagcag	0.365													8	116	---	---	---	---					
TCF20	6942	broad.mit.edu	37	22	42610776	42610778	+	In_Frame_Del	DEL	TGC	-	-			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr22:42610776_42610778delTGC	uc003bcj.1	-	1	668_670	c.534_536delGCA	c.(532-537)CAGCAA>CAA	p.178_179QQ>Q	TCF20_uc003bck.1_In_Frame_Del_p.178_179QQ>Q|TCF20_uc003bnt.2_In_Frame_Del_p.178_179QQ>Q	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	178_179	Poly-Gln.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						CTGCTGGACTTGCTGCTGCTGCT	0.571													7	179	---	---	---	---					
NKTR	4820	broad.mit.edu	37	3	42679035	42679036	+	Frame_Shift_Ins	INS	-	C	C			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr3:42679035_42679036insC	uc003clo.2	+	13	1986_1987	c.1839_1840insC	c.(1837-1842)AGTCCCfs	p.S613fs	NKTR_uc003clm.1_Frame_Shift_Ins_p.S360fs|NKTR_uc003clp.2_Frame_Shift_Ins_p.S360fs|NKTR_uc011azp.1_Intron|NKTR_uc003clq.1_Frame_Shift_Ins_p.S503fs|NKTR_uc003clr.1_Frame_Shift_Ins_p.S360fs|NKTR_uc003cls.2_Frame_Shift_Ins_p.S313fs	NM_005385	NP_005376	P30414	NKTR_HUMAN	natural killer-tumor recognition sequence	613_614					protein folding	membrane	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(284;0.24)		TGAGTGACAGTCCCCCCCCTTC	0.421													7	376	---	---	---	---					
COL12A1	1303	broad.mit.edu	37	6	75899298	75899298	+	Frame_Shift_Del	DEL	T	-	-			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr6:75899298delT	uc003phs.2	-	6	794	c.628delA	c.(628-630)ATTfs	p.I210fs	COL12A1_uc003pht.2_Intron|COL12A1_uc003phu.1_5'Flank	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	210	VWFA 1.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TTATATGGAATTTTTTTTATT	0.323													7	176	---	---	---	---					
ZNF704	619279	broad.mit.edu	37	8	81733778	81733778	+	Frame_Shift_Del	DEL	T	-	-			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr8:81733778delT	uc003yby.1	-	2	284	c.52delA	c.(52-54)ATGfs	p.M18fs		NM_001033723	NP_001028895	Q6ZNC4	ZN704_HUMAN	zinc finger protein 704	18						intracellular	zinc ion binding				0	all_cancers(3;8.53e-08)|all_epithelial(4;4.59e-10)|Breast(3;2.56e-06)|Lung NSC(7;2.58e-06)|all_lung(9;9.4e-06)		BRCA - Breast invasive adenocarcinoma(6;0.00401)|Epithelial(68;0.00448)|all cancers(69;0.0277)			TGATGAGACATTTTTTTACCA	0.423													9	1587	---	---	---	---					
UBR5	51366	broad.mit.edu	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	-	-			TCGA-FR-A2OS-01A-11D-A21A-08	TCGA-FR-A2OS-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ce829e3d-a0cd-40f6-9974-426eb4085f4f	9b315eb9-416e-4ee3-87dd-f7057c6ef2d1	g.chr8:103289349delT	uc003ykr.1	-	45	6393	c.6360delA	c.(6358-6360)AAAfs	p.K2120fs	UBR5_uc003yks.1_Frame_Shift_Del_p.K2120fs	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	2120					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			CTTCCCCTTCTTTTTTTTGCC	0.378													10	616	---	---	---	---					
