Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
VPS13D	55187	broad.mit.edu	37	1	12374213	12374213	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:12374213C>T	uc001atv.2	+	30	7118	c.6977C>T	c.(6976-6978)TCC>TTC	p.S2326F	VPS13D_uc001atw.2_Missense_Mutation_p.S2326F|VPS13D_uc001atx.2_Missense_Mutation_p.S1514F|VPS13D_uc001aty.1_Missense_Mutation_p.S64F	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	2326					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		GAAAGTTTTTCCAACCAAACC	0.403													10	45					0	0	6.40141e-05	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887329	12887329	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:12887329C>T	uc001auk.2	-	3	724	c.528G>A	c.(526-528)TGG>TGA	p.W176*		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	176											0						TGGGCAGTATCCACTTGCAAT	0.483													71	234					0	0	0.000147903	0	0
PRAMEF22	653606	broad.mit.edu	37	1	13036637	13036637	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:13036637C>T	uc009vnq.1	+	2	709	c.709C>T	c.(709-711)CGC>TGC	p.R237C	PRAMEF5_uc001aur.2_Intron	NM_001100631	NP_001094101	A3QJZ6	PRA22_HUMAN	PRAME family member 22	237											0						GAGGAATCTTCGCAAACTCTT	0.473													25	195					0	0	0.000339439	0	0
RAP1GAP	5909	broad.mit.edu	37	1	21928267	21928267	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:21928267T>C	uc001bex.2	-	20	1820	c.1562A>G	c.(1561-1563)AAG>AGG	p.K521R	RAP1GAP_uc001bev.2_Missense_Mutation_p.K606R|RAP1GAP_uc001bew.2_Missense_Mutation_p.K585R|RAP1GAP_uc001bey.2_Missense_Mutation_p.K547R	NM_002885	NP_002876	P47736	RPGP1_HUMAN	RAP1 GTPase activating protein isoform c	521					regulation of Ras GTPase activity|signal transduction	cytosol|Golgi membrane|membrane fraction	GTPase activator activity|GTPase activity|protein homodimerization activity|Ras GTPase binding			breast(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000861)|all_lung(284;0.000901)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;2.3e-26)|COAD - Colon adenocarcinoma(152;1.59e-05)|GBM - Glioblastoma multiforme(114;2.7e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000354)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00862)|READ - Rectum adenocarcinoma(331;0.0625)|Lung(427;0.146)		GTCTGGGGTCTTCTGACCAGC	0.667													8	23					0	0	0.000274275	0	0
ZBTB8A	653121	broad.mit.edu	37	1	33060754	33060754	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:33060754G>A	uc001bvn.2	+	4	1408	c.923G>A	c.(922-924)AGG>AAG	p.R308K	ZBTB8A_uc001bvk.2_RNA|ZBTB8A_uc001bvm.2_Missense_Mutation_p.R308K	NM_001040441	NP_001035531	Q96BR9	ZBT8A_HUMAN	zinc finger and BTB domain containing 8A	308					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACAGGAGAAAGGCCCTATCCA	0.453													23	61					0	0	0.000147802	0	0
CSMD2	114784	broad.mit.edu	37	1	34008417	34008417	+	Silent	SNP	G	A	A	rs138523089	byFrequency	TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:34008417G>A	uc001bxn.1	-	57	8777	c.8748C>T	c.(8746-8748)ATC>ATT	p.I2916I	CSMD2_uc001bxm.1_Silent_p.I3060I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2916	Sushi 21.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ACTCATAGACGATAGAGCTGG	0.542													13	34					0	0	0.00010058	0	0
CSMD2	114784	broad.mit.edu	37	1	34038260	34038260	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:34038260C>T	uc001bxn.1	-	51	7643	c.7614G>A	c.(7612-7614)AAG>AAA	p.K2538K	CSMD2_uc001bxm.1_Silent_p.K2536K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2538	Extracellular (Potential).|Sushi 15.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCATTCCATTCTTGGGGGCCT	0.488													16	54					0	0	0.000229342	0	0
CSMD2	114784	broad.mit.edu	37	1	34117982	34117982	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:34117982C>T	uc001bxn.1	-	28	4436	c.4407G>A	c.(4405-4407)AAG>AAA	p.K1469K	CSMD2_uc001bxm.1_Silent_p.K1509K|CSMD2_uc001bxo.1_Silent_p.K382K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1469	CUB 9.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGTCACACTCCTTGCCTGGCG	0.557													24	62					0	0	0.00047179	0	0
KIAA0467	23334	broad.mit.edu	37	1	43896717	43896717	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:43896717C>T	uc001cjk.1	+	18	2637	c.2175C>T	c.(2173-2175)CCC>CCT	p.P725P		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	1624						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TGACTTTGCCCCTGGAAGTGG	0.617													5	40					0	0	0.000602214	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47325337	47325337	+	RNA	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:47325337G>A	uc001cqo.1	-	9		c.1231C>T				NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						TGCAGGTAAGGAGCGTCCATC	0.403													12	61					0	0	0.000566183	0	0
ZYG11B	79699	broad.mit.edu	37	1	53267769	53267769	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:53267769C>T	uc001cuj.2	+	10	1848	c.1653C>T	c.(1651-1653)TTC>TTT	p.F551F	ZYG11B_uc009vzg.2_RNA|ZYG11B_uc010onj.1_Intron|ZYG11B_uc009vzh.2_5'UTR	NM_024646	NP_078922	Q9C0D3	ZY11B_HUMAN	zyg-11 homolog B	551							protein binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						TACAGTCTTTCCCAACTGAGT	0.294													17	91					0	0	0.000229342	0	0
C1orf87	127795	broad.mit.edu	37	1	60456397	60456397	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:60456397G>A	uc001czs.1	-	12	1681	c.1589C>T	c.(1588-1590)TCG>TTG	p.S530L	C1orf87_uc001czr.1_Missense_Mutation_p.S122L	NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	530							calcium ion binding			ovary(1)|breast(1)	2						ATTTTCTCCCGAACGGAATCT	0.473													56	160					0	0	0.000147903	0	0
ANKRD13C	81573	broad.mit.edu	37	1	70819698	70819698	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:70819698T>C	uc001dex.3	-	1	720	c.394A>G	c.(394-396)ATC>GTC	p.I132V	ANKRD13C_uc009wbk.2_Missense_Mutation_p.I132V|ANKRD13C_uc001dey.3_Missense_Mutation_p.I132V|HHLA3_uc010oqp.1_5'Flank|HHLA3_uc001dfa.2_5'Flank|HHLA3_uc001dfb.2_5'Flank|HHLA3_uc001dfc.2_5'Flank	NM_030816	NP_110443	Q8N6S4	AN13C_HUMAN	ankyrin repeat domain 13C	132	ANK 1.				protein retention in ER lumen|regulation of anoikis|regulation of receptor biosynthetic process	endoplasmic reticulum membrane|perinuclear region of cytoplasm	receptor binding				0						TGCGTGCGGATGAGAGAGGAG	0.617													4	17					0	0	0.00024832	0	0
C1orf173	127254	broad.mit.edu	37	1	75037652	75037652	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:75037652G>A	uc001dgg.2	-	14	3961	c.3742C>T	c.(3742-3744)CAC>TAC	p.H1248Y		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1248	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CAGGAGTCGTGATCTTTGGCT	0.602													12	36					0	0	0.000308642	0	0
C1orf173	127254	broad.mit.edu	37	1	75101970	75101970	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:75101970G>A	uc001dgg.2	-	6	816	c.597C>T	c.(595-597)CCC>CCT	p.P199P	C1orf173_uc001dgi.3_5'Flank	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	199										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TTACCCCAATGGGAAACAGAG	0.318													26	72					0	0	0.00047179	0	0
COL11A1	1301	broad.mit.edu	37	1	103471440	103471440	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:103471440C>A	uc001dul.2	-	18	2117	c.1799G>T	c.(1798-1800)CGA>CTA	p.R600L	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Missense_Mutation_p.R612L|COL11A1_uc001dun.2_Missense_Mutation_p.R561L|COL11A1_uc009weh.2_Missense_Mutation_p.R484L	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	600	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		ATCAAACCCTCGATCTCCCTG	0.318													6	141					0.000274275	0.00463112	0.000274275	1	0
TAF13	6884	broad.mit.edu	37	1	109607239	109607240	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:109607239_109607240GG>TT	uc001dwm.1	-	4	335_336	c.280_281CC>AA	c.(280-282)CCA>AAA	p.P94K		NM_005645	NP_005636	Q15543	TAF13_HUMAN	TBP-associated factor 13	94					transcription elongation from RNA polymerase II promoter|viral reproduction	transcription factor TFIID complex	protein C-terminus binding|sequence-specific DNA binding transcription factor activity				0		all_epithelial(167;0.000102)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0138)|Lung(183;0.0425)|COAD - Colon adenocarcinoma(174;0.113)|Epithelial(280;0.166)|all cancers(265;0.191)|LUSC - Lung squamous cell carcinoma(189;0.228)		AAACTTCCTTGGGTCCTTTCGA	0.361													18	786					0	0	6.4e-05	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			58	110					0	0	0.000147903	0	0
SPAG17	200162	broad.mit.edu	37	1	118550793	118550793	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:118550793C>T	uc001ehk.2	-	31	4529	c.4461G>A	c.(4459-4461)CAG>CAA	p.Q1487Q		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1487						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TACACTTCACCTGCCTGGTGA	0.488													7	36					0	0	0.000157383	0	0
CHD1L	9557	broad.mit.edu	37	1	146740470	146740470	+	Missense_Mutation	SNP	G	T	T	rs140168816		TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:146740470G>T	uc001epm.3	+	10	1081	c.1018G>T	c.(1018-1020)GAC>TAC	p.D340Y	uc001epp.2_Intron|CHD1L_uc001epn.3_Missense_Mutation_p.D227Y|CHD1L_uc010ozo.1_RNA|CHD1L_uc009wjg.2_RNA|CHD1L_uc009wjh.2_Intron|CHD1L_uc010ozp.1_Missense_Mutation_p.D59Y|CHD1L_uc001epo.3_Missense_Mutation_p.D136Y|CHD1L_uc010ozq.1_5'UTR|CHD1L_uc009wji.2_Missense_Mutation_p.D59Y	NM_004284	NP_004275	Q86WJ1	CHD1L_HUMAN	chromodomain helicase DNA binding protein	340					chromatin remodeling|DNA repair	cytoplasm|nucleus|plasma membrane	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(3)|lung(2)|upper_aerodigestive_tract(1)	6	all_hematologic(923;0.0487)					TGAAGTTGGAGACCACCTGAC	0.517													17	56					7.87624e-14	1.38689e-12	0.000375601	1	0
ARNT	405	broad.mit.edu	37	1	150812123	150812123	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:150812123G>A	uc001evr.1	-	6	423	c.280C>T	c.(280-282)CAC>TAC	p.H94Y	ARNT_uc001evs.1_Missense_Mutation_p.H79Y|ARNT_uc009wmb.1_Missense_Mutation_p.H85Y|ARNT_uc009wmc.1_Missense_Mutation_p.H94Y|ARNT_uc009wmd.1_Missense_Mutation_p.H79Y|ARNT_uc009wme.1_Missense_Mutation_p.H94Y|ARNT_uc010pcl.1_Missense_Mutation_p.H78Y	NM_001668	NP_001659	P27540	ARNT_HUMAN	aryl hydrocarbon receptor nuclear translocator	94	Basic motif.				positive regulation of hormone biosynthetic process|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|response to hypoxia		aryl hydrocarbon receptor binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity			skin(4)|lung(3)|central_nervous_system(1)|kidney(1)	9	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.02)|BRCA - Breast invasive adenocarcinoma(12;0.00606)|LUSC - Lung squamous cell carcinoma(543;0.211)			ATTTCACTGTGATTTTCCCTG	0.498			T	ETV6	AML								5	12					0	0	0.000602214	0	0
FLG	2312	broad.mit.edu	37	1	152278666	152278666	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:152278666C>T	uc001ezu.1	-	3	8732	c.8696G>A	c.(8695-8697)GGA>GAA	p.G2899E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2899	Ser-rich.|Filaggrin 17.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCTGAATGTCCCTCACTGTC	0.567									Ichthyosis				25	246					0	0	0.000228196	0	0
FLG	2312	broad.mit.edu	37	1	152280839	152280839	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:152280839C>T	uc001ezu.1	-	3	6559	c.6523G>A	c.(6523-6525)GGA>AGA	p.G2175R		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2175	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCAGACCTTCCCTGGGATGTG	0.562									Ichthyosis				31	407					0	0	0.000191422	0	0
FLG	2312	broad.mit.edu	37	1	152284730	152284730	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:152284730C>T	uc001ezu.1	-	3	2668	c.2632G>A	c.(2632-2634)GGA>AGA	p.G878R	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	878	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCAGACCTTCCCTGGGATGTG	0.582									Ichthyosis				10	319					0	0	0.000175454	0	0
IVL	3713	broad.mit.edu	37	1	152882398	152882398	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:152882398C>T	uc001fau.2	+	2	171	c.125C>T	c.(124-126)CCC>CTC	p.P42L		NM_005547	NP_005538	P07476	INVO_HUMAN	involucrin	42					isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(3)	3	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCACTGCCTCCCCCATGCCAG	0.552													16	36					0	0	0.000422831	0	0
PGLYRP4	57115	broad.mit.edu	37	1	153312870	153312870	+	Missense_Mutation	SNP	C	T	T	rs148847664		TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:153312870C>T	uc001fbo.2	-	7	876	c.811G>A	c.(811-813)GAC>AAC	p.D271N	PGLYRP4_uc001fbp.2_Missense_Mutation_p.D267N	NM_020393	NP_065126	Q96LB8	PGRP4_HUMAN	peptidoglycan recognition protein-I-beta	271					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)|skin(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			TAACCAATGTCGCATGACTTG	0.502													13	53					0	0	0.000422831	0	0
ITLN2	142683	broad.mit.edu	37	1	160920977	160920977	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:160920977C>T	uc001fxd.2	-	4	355	c.297G>A	c.(295-297)GAG>GAA	p.E99E	ITLN2_uc009wts.2_Silent_p.E98E|ITLN2_uc010pju.1_Silent_p.E16E	NM_080878	NP_543154	Q8WWU7	ITLN2_HUMAN	intelectin 2 precursor	99	Fibrinogen C-terminal.				signal transduction	extracellular region	receptor binding|sugar binding			ovary(1)	1	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GCATGTCATTCTCGTGCACGC	0.582													8	26					0	0	0.000274275	0	0
C1orf114	57821	broad.mit.edu	37	1	169388397	169388397	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:169388397C>T	uc001gga.1	-	4	1237	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K	C1orf114_uc001gfz.1_Missense_Mutation_p.E357K|C1orf114_uc009wvq.1_Missense_Mutation_p.E357K|C1orf114_uc001ggb.2_Missense_Mutation_p.E357K	NM_021179	NP_067002	Q5TID7	CA114_HUMAN	hypothetical protein LOC57821	357	Potential.										0	all_hematologic(923;0.208)					CGTCGCTCTTCCTAGTAAAAG	0.308													8	17					0	0	0.000157383	0	0
SLC9A11	284525	broad.mit.edu	37	1	173490538	173490538	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:173490538C>T	uc001giz.2	-	22	3064	c.2641G>A	c.(2641-2643)GAA>AAA	p.E881K	SLC9A11_uc009wwe.2_Missense_Mutation_p.E439K	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	881	cNMP.				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TTGGCTCTTTCCTGAGTGGGA	0.313													9	40					0	0	0.000442599	0	0
SLC9A11	284525	broad.mit.edu	37	1	173499164	173499164	+	Silent	SNP	T	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:173499164T>A	uc001giz.2	-	18	2616	c.2193A>T	c.(2191-2193)GCA>GCT	p.A731A	SLC9A11_uc009wwe.2_Silent_p.A289A|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	731					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TCTGCACATCTGCAATTCTTA	0.333													16	46					0	0	0.000422831	0	0
TNN	63923	broad.mit.edu	37	1	175105031	175105031	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:175105031G>A	uc001gkl.1	+	16	3494	c.3381G>A	c.(3379-3381)AGG>AGA	p.R1127R		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1127	Fibrinogen C-terminal.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		AGCGATGGAGGAGCTATGTGG	0.532													32	95					0	0	0.000132358	0	0
FAM129A	116496	broad.mit.edu	37	1	184801002	184801002	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:184801002C>T	uc001gra.2	-	6	890	c.696G>A	c.(694-696)ATG>ATA	p.M232I	FAM129A_uc001grb.1_Missense_Mutation_p.M30I|FAM129A_uc009wyh.1_Intron|FAM129A_uc009wyi.1_Missense_Mutation_p.M30I	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	232					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						CCCCAGTGATCATTTCCCAGG	0.408													20	76					0	0	0.000175454	0	0
FAM5C	339479	broad.mit.edu	37	1	190068158	190068158	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:190068158C>T	uc001gse.1	-	8	1523	c.1291G>A	c.(1291-1293)GAC>AAC	p.D431N	FAM5C_uc010pot.1_Missense_Mutation_p.D329N	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	431						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					ACCACCTGGTCATTCGGACAC	0.592													5	19					0	0	8.12818e-05	0	0
TNNT2	7139	broad.mit.edu	37	1	201334327	201334327	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:201334327C>T	uc001gwf.2	-	10	472	c.403G>A	c.(403-405)GAC>AAC	p.D135N	TNNT2_uc001gwg.2_Missense_Mutation_p.D125N|TNNT2_uc001gwh.2_Missense_Mutation_p.D120N|TNNT2_uc001gwi.2_Intron|TNNT2_uc009wzr.2_Missense_Mutation_p.D66N|TNNT2_uc001gwj.1_5'Flank|TNNT2_uc009wzs.1_Missense_Mutation_p.D100N|TNNT2_uc001gwk.1_Missense_Mutation_p.D66N|TNNT2_uc009wzt.1_Missense_Mutation_p.D125N	NM_000364	NP_000355	P45379	TNNT2_HUMAN	troponin T type 2, cardiac isoform 1	135					ATP catabolic process|muscle filament sliding|negative regulation of ATPase activity|positive regulation of ATPase activity|regulation of heart contraction|response to calcium ion|response to calcium ion|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin binding|tropomyosin binding|troponin C binding|troponin I binding				0						ACGATCCTGTCTTTGAGAGAA	0.488													24	88					0	0	0.00047179	0	0
AVPR1B	553	broad.mit.edu	37	1	206225010	206225010	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:206225010C>T	uc001hds.2	+	1	728	c.570C>T	c.(568-570)TTC>TTT	p.F190F		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	190	Extracellular (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	GGGCAGACTTCGGCTTCCCTT	0.632													26	61					0	0	0.000117367	0	0
CD34	947	broad.mit.edu	37	1	208062929	208062929	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:208062929C>T	uc001hgw.1	-	5	893	c.635G>A	c.(634-636)CGA>CAA	p.R212Q	CD34_uc001hgv.1_Missense_Mutation_p.R54Q|CD34_uc001hgx.1_Missense_Mutation_p.R212Q|CD34_uc010psj.1_Missense_Mutation_p.R77Q	NM_001025109	NP_001020280	P28906	CD34_HUMAN	CD34 antigen isoform a	212	Extracellular (Potential).				cell-cell adhesion|leukocyte migration|regulation of immune response	integral to membrane	carbohydrate binding			ovary(1)	1						ACACAGCACTCGGGCCAGGCC	0.582													18	39					0	0	0.000132079	0	0
SERTAD4	56256	broad.mit.edu	37	1	210415243	210415243	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:210415243G>A	uc001hhy.2	+	4	811	c.632G>A	c.(631-633)GGA>GAA	p.G211E	SERTAD4_uc009xcw.2_Missense_Mutation_p.G211E	NM_019605	NP_062551	Q9NUC0	SRTD4_HUMAN	SERTA domain containing 4	211							protein binding			ovary(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0237)|all cancers(67;0.127)		GCTAATGTTGGAAGTGCCTCC	0.348													47	117					0	0	0.000147903	0	0
PCNXL2	80003	broad.mit.edu	37	1	233296076	233296076	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:233296076G>A	uc001hvl.2	-	19	3705	c.3470C>T	c.(3469-3471)TCA>TTA	p.S1157L	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1157						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				AATGGGGTGTGAAATCCACAT	0.443													15	42					0	0	0.000422831	0	0
TARBP1	6894	broad.mit.edu	37	1	234541779	234541779	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:234541779G>A	uc001hwd.2	-	24	3859	c.3859C>T	c.(3859-3861)CGA>TGA	p.R1287*		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	1287					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			GCATACAGTCGAACACTAAAA	0.383													27	72					0	0	0.000279167	0	0
ACTN2	88	broad.mit.edu	37	1	236912437	236912437	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:236912437T>C	uc001hyf.2	+	14	1733	c.1529T>C	c.(1528-1530)TTG>TCG	p.L510S	ACTN2_uc001hyg.2_Missense_Mutation_p.L302S|ACTN2_uc009xgi.1_Missense_Mutation_p.L510S|ACTN2_uc010pxu.1_Missense_Mutation_p.L199S|ACTN2_uc001hyh.2_Missense_Mutation_p.L198S	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	510					focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			ATGGAGAAATTGCTAGAAACC	0.398													11	42					0	0	0.000151284	0	0
OR2M5	127059	broad.mit.edu	37	1	248309135	248309135	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:248309135G>A	uc010pze.1	+	1	686	c.686G>A	c.(685-687)GGA>GAA	p.G229E		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			ATTCACATGGGATCTGGAGAG	0.448													48	147					0	0	0.000147903	0	0
OR2T1	26696	broad.mit.edu	37	1	248570031	248570031	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr1:248570031G>A	uc010pzm.1	+	1	736	c.736G>A	c.(736-738)GAG>AAG	p.E246K		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	246	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGCCCTCTACGAGACAGTGAT	0.498													16	48					0	0	7.07596e-05	0	0
ITIH2	3698	broad.mit.edu	37	10	7786092	7786092	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:7786092G>A	uc001ijs.2	+	18	2419	c.2257G>A	c.(2257-2259)GGA>AGA	p.G753R		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	753					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						GCCCAACAATGGAAAACTAAG	0.388													17	25					0	0	9.7654e-05	0	0
CAMK1D	57118	broad.mit.edu	37	10	12870848	12870848	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:12870848C>T	uc001ilo.2	+	11	1355	c.1120C>T	c.(1120-1122)CCC>TCC	p.P374S		NM_153498	NP_705718	Q8IU85	KCC1D_HUMAN	calcium/calmodulin-dependent protein kinase ID	374						calcium- and calmodulin-dependent protein kinase complex|cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|stomach(1)	2				GBM - Glioblastoma multiforme(1;3.16e-05)		GAGACCCAGGCCCACCACTGT	0.647													49	179					0	0	0.000147903	0	0
C1QL3	389941	broad.mit.edu	37	10	16556625	16556625	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:16556625C>T	uc001ioj.1	-	2	1610	c.670G>A	c.(670-672)GGA>AGA	p.G224R		NM_001010908	NP_001010908	Q5VWW1	C1QL3_HUMAN	complement component 1, q subcomponent-like 3	224	C1q.					collagen				ovary(1)	1						ACTTCATCTCCCGGCTCCAAA	0.418													15	51					0	0	0.000566183	0	0
KIAA1217	56243	broad.mit.edu	37	10	24813599	24813600	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:24813599_24813600CC>TT	uc001iru.3	+	13	3207_3208	c.2804_2805CC>TT	c.(2803-2805)TCC>TTT	p.S935F	KIAA1217_uc001irs.2_Missense_Mutation_p.S855F|KIAA1217_uc001irt.3_Missense_Mutation_p.S900F|KIAA1217_uc010qcy.1_Missense_Mutation_p.S900F|KIAA1217_uc010qcz.1_Missense_Mutation_p.S900F|KIAA1217_uc001irv.1_Missense_Mutation_p.S750F|KIAA1217_uc010qda.1_Intron|KIAA1217_uc001irw.2_Missense_Mutation_p.S618F|KIAA1217_uc001irz.2_Missense_Mutation_p.S618F|KIAA1217_uc001irx.2_Missense_Mutation_p.S618F|KIAA1217_uc001iry.2_Missense_Mutation_p.S618F	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	935					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GCTCCGCAGTCCCCACAGATAC	0.574													5	34					0	0	6.4e-05	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702304	27702305	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:27702304_27702305CC>TT	uc001itu.2	-	1	993_994	c.875_876GG>AA	c.(874-876)AGG>AAA	p.R292K		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	292					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						AGAGGGGATGCCTGCCGTGGTT	0.624													12	44					0	0	6.4e-05	0	0
MPP7	143098	broad.mit.edu	37	10	28414002	28414002	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:28414002C>T	uc001iua.1	-	9	870	c.466G>A	c.(466-468)GAT>AAT	p.D156N	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.D156N|MPP7_uc009xla.2_Missense_Mutation_p.D156N|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	156	PDZ.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						GTCTGTTCATCCTTCTTAATG	0.403													13	54					0	0	0.000422831	0	0
C10orf72	196740	broad.mit.edu	37	10	50315705	50315705	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:50315705C>T	uc001jhf.2	-	2	420	c.391G>A	c.(391-393)GAA>AAA	p.E131K	C10orf72_uc001jhh.2_Missense_Mutation_p.E131K	NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	131	Ig-like.|Extracellular (Potential).					integral to membrane|plasma membrane					0						CTGCTGATTTCCTGGACTCTG	0.617													13	52					0	0	0.000151284	0	0
PCDH15	65217	broad.mit.edu	37	10	55955504	55955504	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:55955504G>A	uc001jju.1	-	11	1639	c.1244C>T	c.(1243-1245)TCG>TTG	p.S415L	PCDH15_uc010qhq.1_Missense_Mutation_p.S420L|PCDH15_uc010qhr.1_Missense_Mutation_p.S415L|PCDH15_uc010qhs.1_Missense_Mutation_p.S420L|PCDH15_uc010qht.1_Missense_Mutation_p.S415L|PCDH15_uc010qhu.1_Missense_Mutation_p.S415L|PCDH15_uc001jjv.1_Missense_Mutation_p.S393L|PCDH15_uc010qhv.1_Missense_Mutation_p.S415L|PCDH15_uc010qhw.1_Missense_Mutation_p.S378L|PCDH15_uc010qhx.1_Missense_Mutation_p.S415L|PCDH15_uc010qhy.1_Missense_Mutation_p.S420L|PCDH15_uc010qhz.1_Missense_Mutation_p.S415L|PCDH15_uc010qia.1_Missense_Mutation_p.S393L|PCDH15_uc010qib.1_Missense_Mutation_p.S393L|PCDH15_uc001jjw.2_Missense_Mutation_p.S415L	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	415	Cadherin 4.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GAGACTGTCCGAAATGGTTGC	0.373										HNSCC(58;0.16)			22	67					0	0	9.22233e-05	0	0
PBLD	64081	broad.mit.edu	37	10	70048753	70048753	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:70048753G>A	uc001jns.1	-	7	650	c.447C>T	c.(445-447)GTC>GTT	p.V149V	PBLD_uc001jnr.1_Silent_p.V116V|PBLD_uc001jnt.1_Silent_p.V149V|PBLD_uc001jnu.1_Silent_p.V149V|PBLD_uc001jnv.1_Silent_p.V116V	NM_022129	NP_071412	P30039	PBLD_HUMAN	MAWD binding protein isoform a	149					biosynthetic process		isomerase activity			skin(2)|ovary(1)	3						AGATGTCCTGGACCAGTGTGT	0.512													30	54					0	0	0.000409698	0	0
SYNPO2L	79933	broad.mit.edu	37	10	75407478	75407478	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:75407478C>T	uc001jut.3	-	4	2084	c.1932G>A	c.(1930-1932)ACG>ACA	p.T644T	SYNPO2L_uc001jus.3_Silent_p.T420T	NM_001114133	NP_001107605	Q9H987	SYP2L_HUMAN	synaptopodin 2-like isoform a	644	Pro-rich.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1	Prostate(51;0.0112)					GCGAGTTCTTCGTCTCCTCCT	0.637													50	121					0	0	0.000147903	0	0
ANKRD22	118932	broad.mit.edu	37	10	90583082	90583082	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:90583082G>A	uc001kfj.3	-	5	821	c.453C>T	c.(451-453)ATC>ATT	p.I151I		NM_144590	NP_653191	Q5VYY1	ANR22_HUMAN	ankyrin repeat domain 22	151	ANK 4.										0		Colorectal(252;0.0163)		Colorectal(12;6.29e-05)|COAD - Colon adenocarcinoma(12;7.69e-05)		AGAGCAGAGGGATAAGAGACT	0.488													46	112					0	0	0.000147903	0	0
PLCE1	51196	broad.mit.edu	37	10	96014752	96014752	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:96014752C>T	uc001kjk.2	+	11	4134	c.3500C>T	c.(3499-3501)CCC>CTC	p.P1167L	PLCE1_uc010qnx.1_Missense_Mutation_p.P1167L|PLCE1_uc001kjm.2_Missense_Mutation_p.P859L	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1167					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				ACGTCATCTCCCATCAGGCCA	0.552													17	71					0	0	7.07596e-05	0	0
CYP2C18	1562	broad.mit.edu	37	10	96466712	96466712	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:96466712G>A	uc001kjv.3	+	5	1140	c.814G>A	c.(814-816)GAA>AAA	p.E272K	CYP2C18_uc001kjw.3_Intron|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	272					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		GATCAAAATGGAACAGGTAAA	0.348													9	32					0	0	0.00010058	0	0
PAX2	5076	broad.mit.edu	37	10	102587325	102587325	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:102587325C>T	uc001krk.3	+	11	1734	c.1184C>T	c.(1183-1185)CCC>CTC	p.P395L	PAX2_uc001krl.3_3'UTR|PAX2_uc001krm.3_Silent_p.A401A|PAX2_uc001kro.3_Silent_p.A378A|PAX2_uc001krn.3_Missense_Mutation_p.P372L|PAX2_uc010qps.1_Silent_p.A377A	NM_003990	NP_003981	Q02962	PAX2_HUMAN	paired box protein 2 isoform e	395					anti-apoptosis|axonogenesis|brain morphogenesis|branching involved in ureteric bud morphogenesis|cell fate determination|cellular response to glucose stimulus|cellular response to hydrogen peroxide|cellular response to retinoic acid|cochlea development|glial cell differentiation|inner ear morphogenesis|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesodermal cell fate specification|mesonephros development|metanephric collecting duct development|metanephric distal convoluted tubule development|metanephric mesenchymal cell differentiation|metanephric nephron tubule formation|negative regulation of caspase activity|negative regulation of cytolysis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|negative regulation of reactive oxygen species metabolic process|negative regulation of transcription, DNA-dependent|nephric duct formation|neural tube closure|optic chiasma development|optic cup morphogenesis involved in camera-type eye development|optic nerve structural organization|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of metanephric glomerulus development|positive regulation of optic nerve formation|positive regulation of transcription from RNA polymerase II promoter|pronephric field specification|protein kinase B signaling cascade|reactive oxygen species metabolic process|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of metanephros size|retinal pigment epithelium development|stem cell differentiation|transcription from RNA polymerase II promoter|ureter maturation|vestibulocochlear nerve formation|visual perception	centriolar satellite|nucleus|protein complex|protein-DNA complex	core promoter proximal region sequence-specific DNA binding|superoxide-generating NADPH oxidase activity				0		Colorectal(252;0.234)		Epithelial(162;1.32e-08)|all cancers(201;7.32e-07)		ATAGTGCCGCCCCCCGGGGCT	0.572													20	73					0	0	9.22233e-05	0	0
ELOVL3	83401	broad.mit.edu	37	10	103988324	103988324	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:103988324C>T	uc001kut.2	+	3	547	c.384C>T	c.(382-384)CTC>CTT	p.L128L		NM_152310	NP_689523	Q9HB03	ELOV3_HUMAN	elongation of very long chain fatty acids like	128					fatty acid elongation, monounsaturated fatty acid|fatty acid elongation, polyunsaturated fatty acid|fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding			ovary(2)	2		Colorectal(252;0.207)		Epithelial(162;4.47e-08)|all cancers(201;7.96e-07)		TCATAGAACTCGGTGAGTGGC	0.512													25	66					0	0	0.000117367	0	0
TCF7L2	6934	broad.mit.edu	37	10	114925428	114925428	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:114925428C>T	uc001lae.3	+	14	2013	c.1506C>T	c.(1504-1506)TCC>TCT	p.S502S	TCF7L2_uc001lac.3_Silent_p.S496S|TCF7L2_uc010qrk.1_3'UTR|TCF7L2_uc010qrl.1_Silent_p.S479S|TCF7L2_uc010qrm.1_3'UTR|TCF7L2_uc010qrn.1_3'UTR|TCF7L2_uc001lad.3_3'UTR|TCF7L2_uc001lag.3_3'UTR|TCF7L2_uc001laf.3_Silent_p.S479S|TCF7L2_uc010qro.1_3'UTR|TCF7L2_uc001lah.2_3'UTR|TCF7L2_uc010qrp.1_3'UTR|TCF7L2_uc010qrq.1_3'UTR|TCF7L2_uc010qrr.1_Silent_p.S434S|TCF7L2_uc010qrs.1_Silent_p.S390S|TCF7L2_uc010qrt.1_Silent_p.S390S|TCF7L2_uc010qru.1_3'UTR|TCF7L2_uc010qrv.1_3'UTR|TCF7L2_uc010qrw.1_3'UTR|TCF7L2_uc010qrx.1_3'UTR	NM_001146274	NP_001139746	Q9NQB0	TF7L2_HUMAN	transcription factor 7-like 2 isoform 1	519					anti-apoptosis|blood vessel development|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell cycle arrest|cell proliferation|fat cell differentiation|glucose homeostasis|maintenance of DNA repeat elements|myoblast cell fate commitment|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|pancreas development|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of insulin secretion|positive regulation of protein binding|positive regulation of protein export from nucleus|positive regulation of protein kinase B signaling cascade|positive regulation of transcription from RNA polymerase II promoter|regulation of hormone metabolic process|regulation of smooth muscle cell proliferation|response to glucose stimulus	beta-catenin-TCF7L2 complex|PML body|protein-DNA complex	armadillo repeat domain binding|beta-catenin binding|gamma-catenin binding|nuclear hormone receptor binding|protein kinase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			large_intestine(3)|ovary(1)	4		Breast(234;0.058)|Colorectal(252;0.0615)		Epithelial(162;0.00554)|all cancers(201;0.02)		TGCTAGGCTCCCCTCCCCGAG	0.632													45	180					0	0	0.000147903	0	0
TACC2	10579	broad.mit.edu	37	10	123971035	123971035	+	Silent	SNP	A	G	G			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:123971035A>G	uc001lfv.2	+	9	7455	c.7095A>G	c.(7093-7095)CAA>CAG	p.Q2365Q	TACC2_uc001lfw.2_Silent_p.Q511Q|TACC2_uc009xzx.2_Silent_p.Q2320Q|TACC2_uc010qtv.1_Silent_p.Q2369Q|TACC2_uc001lfx.2_Silent_p.Q69Q|TACC2_uc001lfy.2_Silent_p.Q69Q|TACC2_uc001lfz.2_Silent_p.Q443Q|TACC2_uc001lga.2_Silent_p.Q443Q|TACC2_uc009xzy.2_Silent_p.Q443Q|TACC2_uc001lgb.2_Silent_p.Q400Q|TACC2_uc010qtw.1_Silent_p.Q460Q	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2365	SPAZ.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				TGCCCCAACAATCATACAACT	0.463													55	147					0	0	0.000147903	0	0
ARMS2	387715	broad.mit.edu	37	10	124214457	124214457	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:124214457C>T	uc001lgi.2	+	1	279	c.214C>T	c.(214-216)CAC>TAC	p.H72Y		NM_001099667	NP_001093137	P0C7Q2	ARMS2_HUMAN	age-related maculopathy susceptibility 2	72					retina homeostasis	mitochondrion|photoreceptor inner segment				ovary(1)	1		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGCTAAAATCCACACTGAGCT	0.408													6	32					0	0	3.59834e-05	0	0
MKI67	4288	broad.mit.edu	37	10	129901698	129901698	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr10:129901698G>A	uc001lke.2	-	13	8601	c.8406C>T	c.(8404-8406)GGC>GGT	p.G2802G	MKI67_uc001lkf.2_Silent_p.G2442G|MKI67_uc009yav.1_Silent_p.G2377G|MKI67_uc009yaw.1_Silent_p.G1952G	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2802	16 X 122 AA approximate repeats.|15.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				GGTCTTTGAAGCCAGCTAGGT	0.507													19	54					0	0	7.07596e-05	0	0
LOC650368	650368	broad.mit.edu	37	11	3423861	3423861	+	RNA	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:3423861C>T	uc010qxs.1	+	5		c.415C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						GACCCAGACACGGAGCGGTCG	0.657													6	10					0	0	8.12818e-05	0	0
OR51A4	401666	broad.mit.edu	37	11	4967488	4967488	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:4967488G>A	uc010qys.1	-	1	843	c.843C>T	c.(841-843)CTC>CTT	p.L281L		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	281	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTACAAGTAGGAGAACATTTG	0.438													23	139					0	0	0.000586117	0	0
HBE1	3046	broad.mit.edu	37	11	5290859	5290859	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:5290859C>T	uc001mal.1	-	2	393	c.140G>A	c.(139-141)GGA>GAA	p.G47E	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Missense_Mutation_p.G47E	NM_005330	NP_005321	P02100	HBE_HUMAN	epsilon globin	47					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity				0		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.34e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CGACAGGTTTCCAAAGCTGTC	0.453													17	50					0	0	0.000229342	0	0
NLRP14	338323	broad.mit.edu	37	11	7064319	7064319	+	Silent	SNP	T	C	C			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:7064319T>C	uc001mfb.1	+	4	1385	c.1062T>C	c.(1060-1062)AGT>AGC	p.S354S		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	354	NACHT.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		AAGTATTCAGTTCACTAAAAA	0.443													18	81					0	0	9.7654e-05	0	0
GAS2	2620	broad.mit.edu	37	11	22747973	22747973	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:22747973G>A	uc009yie.2	+	4	709	c.403G>A	c.(403-405)GGT>AGT	p.G135S	GAS2_uc001mqm.2_Missense_Mutation_p.G135S|GAS2_uc001mqn.2_RNA|GAS2_uc001mqo.2_Missense_Mutation_p.G135S	NM_001143830	NP_001137302	O43903	GAS2_HUMAN	growth arrest-specific 2	135	CH.				cell cycle arrest|cellular component disassembly involved in apoptosis|regulation of cell shape	actin filament|cytosol|membrane				ovary(1)|skin(1)	2						TGAATCGGAAGGTTTGGGTAT	0.378													12	78					0	0	0.000308642	0	0
PAMR1	25891	broad.mit.edu	37	11	35456129	35456129	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:35456129G>A	uc001mwg.2	-	10	1600	c.1557C>T	c.(1555-1557)GAC>GAT	p.D519D	PAMR1_uc001mwf.2_Silent_p.D536D|PAMR1_uc010rew.1_Silent_p.D408D|PAMR1_uc010rex.1_Silent_p.D479D	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	519	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						CAACTTTCAGGTCTGCTGTCT	0.552													23	76					0	0	0.000147802	0	0
F2	2147	broad.mit.edu	37	11	46747541	46747541	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:46747541G>A	uc001ndf.3	+	7	735	c.692G>A	c.(691-693)GGG>GAG	p.G231E	F2_uc001ndg.3_RNA	NM_000506	NP_000497	P00734	THRB_HUMAN	coagulation factor II preproprotein	231	Kringle 2.				activation of caspase activity|acute-phase response|blood coagulation, intrinsic pathway|cell surface receptor linked signaling pathway|cytosolic calcium ion homeostasis|fibrinolysis|leukocyte migration|negative regulation of astrocyte differentiation|negative regulation of fibrinolysis|negative regulation of platelet activation|negative regulation of proteolysis|peptidyl-glutamic acid carboxylation|platelet activation|positive regulation of collagen biosynthetic process|positive regulation of protein phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of release of sequestered calcium ion into cytosol|post-translational protein modification|proteolysis|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	cytosol|endoplasmic reticulum lumen|extracellular space|Golgi lumen|plasma membrane|soluble fraction	calcium ion binding|growth factor activity|serine-type endopeptidase activity|thrombospondin receptor activity			ovary(3)	3		all_lung(304;0.000414)|Lung NSC(402;0.0011)		BRCA - Breast invasive adenocarcinoma(625;0.146)	Antihemophilic Factor(DB00025)|Argatroban(DB00278)|Bivalirudin(DB00006)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)|Enoxaparin(DB01225)|Heparin(DB01109)|Lepirudin(DB00001)|Menadione(DB00170)|Proflavine(DB01123)|Simvastatin(DB00641)|Suramin(DB04786)|Warfarin(DB00682)|Ximelagatran(DB04898)	ACCACACATGGGCTCCCCTGC	0.642													15	29					0	0	0.000422831	0	0
LOC646813	646813	broad.mit.edu	37	11	50379313	50379313	+	RNA	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:50379313G>A	uc001nhe.2	+	6		c.796G>A			LOC646813_uc001nhf.1_RNA|LOC646813_uc001nhg.1_RNA|LOC646813_uc001nhh.1_RNA|LOC646813_uc010rib.1_RNA	NR_024504				Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit09-11-09-R.												0						TTTTTTACAGGAAAATTGCAA	0.393													7	22					0	0	0.000157383	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798785	55798785	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:55798785G>A	uc010riw.1	+	1	891	c.891G>A	c.(889-891)GTG>GTA	p.V297V		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					ACAAGGATGTGAAAAATGCTC	0.313													16	54					0	0	0.000308642	0	0
OR5T1	390155	broad.mit.edu	37	11	56043536	56043536	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:56043536C>A	uc001nio.1	+	1	422	c.422C>A	c.(421-423)CCT>CAT	p.P141H		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	141	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					ATCTACAACCCTCTCCTGTAT	0.443													9	166					3.86212e-05	0.000661173	3.86212e-05	1	0
OR5AR1	219493	broad.mit.edu	37	11	56431305	56431305	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:56431305G>A	uc010rjm.1	+	1	144	c.144G>A	c.(142-144)CTG>CTA	p.L48L		NM_001004730	NP_001004730	Q8NGP9	O5AR1_HUMAN	olfactory receptor, family 5, subfamily AR,	48	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGATTATCCTGATTACAACAG	0.478													41	116					0	0	0.000125731	0	0
ZP1	22917	broad.mit.edu	37	11	60637231	60637231	+	Silent	SNP	C	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:60637231C>A	uc001nqd.2	+	3	560	c.540C>A	c.(538-540)CCC>CCA	p.P180P	ZP1_uc001nqe.2_5'Flank	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	180	Extracellular (Potential).				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						ATGCCTTTCCCAGCCCACTGG	0.632													9	27					2.80697e-09	4.9146e-08	6.40141e-05	1	0
FCHSD2	9873	broad.mit.edu	37	11	72726930	72726931	+	Splice_Site	DNP	CC	AA	AA			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:72726930_72726931CC>AA	uc009ytl.2	-	4	387	c.166_splice	c.e4-1	p.G56_splice	FCHSD2_uc010rrg.1_Splice_Site|FCHSD2_uc001oth.3_Splice_Site|FCHSD2_uc001oti.2_Splice_Site_p.G15_splice	NM_014824	NP_055639	O94868	FCSD2_HUMAN	FCH and double SH3 domains 2								protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(5;3.3e-05)			TTCTGCATACCCTGttaaaaaa	0.302													18	490					0	0	6.4e-05	0	0
P2RY2	5029	broad.mit.edu	37	11	72945289	72945289	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:72945289G>A	uc001otj.2	+	3	418	c.85G>A	c.(85-87)GAG>AAG	p.E29K	P2RY2_uc001otk.2_Missense_Mutation_p.E29K|P2RY2_uc001otl.2_Missense_Mutation_p.E29K	NM_002564	NP_002555	P41231	P2RY2_HUMAN	purinergic receptor P2Y2	29	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(1)|skin(1)	4					Suramin(DB04786)	CCGCTTCAACGAGGACTTCAA	0.622													22	104					0	0	0.000175454	0	0
CCDC90B	60492	broad.mit.edu	37	11	82985699	82985699	+	Silent	SNP	G	A	A	rs149725315		TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:82985699G>A	uc001pae.2	-	4	771	c.409C>T	c.(409-411)CTG>TTG	p.L137L	CCDC90B_uc001pac.2_Silent_p.L36L|CCDC90B_uc001pad.2_Silent_p.L36L|CCDC90B_uc001paf.2_Silent_p.L128L	NM_021825	NP_068597	Q9GZT6	CC90B_HUMAN	coiled-coil domain containing 90B precursor	137	Potential.					integral to membrane|mitochondrion|mitochondrion					0		Acute lymphoblastic leukemia(157;0.103)				TCTGCTCTCAGATTTGCAAAT	0.303													35	33					0	0	0.000109025	0	0
FAT3	120114	broad.mit.edu	37	11	92523310	92523311	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:92523310_92523311CC>AA	uc001pdj.3	+	7	4554_4555	c.4537_4538CC>AA	c.(4537-4539)CCT>AAT	p.P1513N		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1513	Cadherin 14.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCGGATTGACCCTAGCACTGGC	0.49										TCGA Ovarian(4;0.039)			16	618					0	0	6.4e-05	0	0
FAT3	120114	broad.mit.edu	37	11	92532982	92532983	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:92532982_92532983GG>TT	uc001pdj.3	+	9	6820_6821	c.6803_6804GG>TT	c.(6802-6804)AGG>ATT	p.R2268I		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2268	Cadherin 20.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ACTGGTGCTAGGGCTGAAGTCA	0.431										TCGA Ovarian(4;0.039)			27	814					0	0	6.4e-05	0	0
GRIA4	2893	broad.mit.edu	37	11	105623911	105623911	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:105623911G>A	uc001pix.2	+	4	898	c.452G>A	c.(451-453)TGG>TAG	p.W151*	GRIA4_uc001piu.1_Nonsense_Mutation_p.W151*|GRIA4_uc001piw.2_Nonsense_Mutation_p.W151*|GRIA4_uc001piv.2_Nonsense_Mutation_p.W151*|GRIA4_uc009yxk.1_Nonsense_Mutation_p.W151*	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	151	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	CACTACGAATGGAACTGTTTT	0.433													89	80					0	0	0.000147903	0	0
OR8B12	219858	broad.mit.edu	37	11	124412729	124412729	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr11:124412729G>A	uc010sam.1	-	1	822	c.822C>T	c.(820-822)TCC>TCT	p.S274S		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	274	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		TATAGAACAGGGAGGACACTT	0.438													19	30					0	0	0.000132079	0	0
VWF	7450	broad.mit.edu	37	12	6181605	6181605	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:6181605C>T	uc001qnn.1	-	9	1251	c.1001G>A	c.(1000-1002)GGA>GAA	p.G334E	VWF_uc010set.1_Missense_Mutation_p.G334E	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	334	TIL 1.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CAGGAGCTGTCCCTCTGGGGT	0.572													20	44					0	0	0.000295444	0	0
GYS2	2998	broad.mit.edu	37	12	21699368	21699368	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:21699368G>A	uc001rfb.2	-	12	1714	c.1459C>T	c.(1459-1461)CCC>TCC	p.P487S		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	487					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						GGTAGTAAGGGACTGGTGGAG	0.373													8	30					0	0	0.000274275	0	0
ABCC9	10060	broad.mit.edu	37	12	21954097	21954097	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:21954097G>A	uc001rfh.2	-	38	4551	c.4531C>T	c.(4531-4533)CTG>TTG	p.L1511L	ABCC9_uc001rfg.2_Silent_p.L40L	NM_020297	NP_064693	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1511	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TCTGCCGTCAGAATAGTGTGT	0.378													21	45					0	0	0.000117367	0	0
DDX11	1663	broad.mit.edu	37	12	31255459	31255459	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:31255459C>T	uc001rjt.1	+	23	2621	c.2370C>T	c.(2368-2370)GGC>GGT	p.G790G	DDX11_uc001rjr.1_Silent_p.G790G|DDX11_uc001rjs.1_Silent_p.G740G|DDX11_uc001rju.1_Silent_p.G462G|DDX11_uc001rjv.1_Silent_p.G790G|DDX11_uc001rjw.1_Silent_p.G764G|DDX11_uc009zjn.1_RNA|DDX11_uc009zjo.1_Silent_p.G12G	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	790					G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					ACAACCTAGGCCGGTAAGTAG	0.612										Multiple Myeloma(12;0.14)			18	27					0	0	7.07596e-05	0	0
SMARCD1	6602	broad.mit.edu	37	12	50484051	50484051	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:50484051C>T	uc001rvx.3	+	8	1071	c.901C>T	c.(901-903)CTA>TTA	p.L301L	SMARCD1_uc001rvy.3_Silent_p.L301L|SMARCD1_uc009zlp.2_Silent_p.L260L	NM_003076	NP_003067	Q96GM5	SMRD1_HUMAN	SWI/SNF-related matrix-associated	301	Interaction with SMARCC1 and SMARCC2.|SWIB.|Necessary for GR/NR3C1-mediated remodeling and transcription from chromatin; required for GR/NR3C1 interaction with the BRG1/SMARCA4 complex in vivo.				chromatin-mediated maintenance of transcription|nervous system development|regulation of transcription from RNA polymerase II promoter	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	protein complex scaffold|transcription coactivator activity			ovary(1)	1						AGACCCCCGCCTAGCTCGACT	0.498													31	70					0	0	0.000132358	0	0
KRT3	3850	broad.mit.edu	37	12	53189282	53189282	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:53189282G>A	uc001say.2	-	1	611	c.545C>T	c.(544-546)CCC>CTC	p.P182L		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	182	Head.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						CACATTGAGGGGCTGCAGGAG	0.542													10	27					0	0	0.00010058	0	0
SDR9C7	121214	broad.mit.edu	37	12	57323194	57323194	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:57323194C>T	uc010sqw.1	-	3	704	c.704G>A	c.(703-705)GGA>GAA	p.G235E		NM_148897	NP_683695	Q8NEX9	DR9C7_HUMAN	short chain dehydrogenase/reductase family 9C,	235						cytoplasm	binding|oxidoreductase activity			central_nervous_system(1)	1						ATAATCCTCTCCGTAGCTGTC	0.567													15	45					0	0	7.07596e-05	0	0
MYO1A	4640	broad.mit.edu	37	12	57430866	57430866	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:57430866G>A	uc001smw.3	-	20	2308	c.2065C>T	c.(2065-2067)CTC>TTC	p.L689F	MYO1A_uc010sqz.1_Missense_Mutation_p.L527F|MYO1A_uc009zpd.2_Missense_Mutation_p.L689F	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	689					sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						TGTTCTTCGAGGTAGAAAAGC	0.572													26	72					0	0	0.000227799	0	0
HELB	92797	broad.mit.edu	37	12	66700177	66700177	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:66700177C>T	uc001sti.2	+	3	688	c.660C>T	c.(658-660)TTC>TTT	p.F220F	HELB_uc010ssz.1_RNA|HELB_uc009zqt.1_RNA	NM_033647	NP_387467	Q8NG08	HELB_HUMAN	helicase (DNA) B	220					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		TAATGGAATTCCTTCCAGTTC	0.368													23	76					0	0	0.000375601	0	0
RAB3IP	117177	broad.mit.edu	37	12	70150363	70150363	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:70150363C>T	uc001svp.2	+	3	925	c.478C>T	c.(478-480)CGT>TGT	p.R160C	RAB3IP_uc001svl.1_Missense_Mutation_p.R144C|RAB3IP_uc001svm.2_Missense_Mutation_p.R144C|RAB3IP_uc001svn.2_Missense_Mutation_p.R144C|RAB3IP_uc001svo.2_RNA|RAB3IP_uc001svq.2_Missense_Mutation_p.R160C|RAB3IP_uc001svr.2_RNA|RAB3IP_uc001svs.2_RNA	NM_175623	NP_783322	Q96QF0	RAB3I_HUMAN	RAB3A interacting protein isoform alpha 2	160					cilium assembly|Golgi to plasma membrane transport|protein localization to organelle|protein transport	actin cortical patch|centrosome|cytosol|lamellipodium|microtubule basal body|nucleus	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1	Esophageal squamous(21;0.187)		Lung(24;0.000381)|OV - Ovarian serous cystadenocarcinoma(12;0.00168)|STAD - Stomach adenocarcinoma(21;0.00694)			TAGTCTGTCTCGTTTACGAAG	0.393													18	84					0	0	9.7654e-05	0	0
PTPRB	5787	broad.mit.edu	37	12	70986321	70986321	+	Silent	SNP	G	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:70986321G>T	uc001swb.3	-	5	897	c.867C>A	c.(865-867)CCC>CCA	p.P289P	PTPRB_uc010sto.1_Silent_p.P289P|PTPRB_uc010stp.1_Silent_p.P289P|PTPRB_uc001swc.3_Silent_p.P507P|PTPRB_uc001swa.3_Silent_p.P507P|PTPRB_uc001swd.3_Silent_p.P506P|PTPRB_uc009zrr.1_Silent_p.P386P|PTPRB_uc001swe.2_Silent_p.P507P	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	289	Fibronectin type-III 4.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AGACTTCCATGGGGGCTAATC	0.403													23	39					3.01185e-09	5.25836e-08	0.000586117	1	0
PTPRR	5801	broad.mit.edu	37	12	71286483	71286483	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:71286483G>A	uc001swi.1	-	2	749	c.333C>T	c.(331-333)ATC>ATT	p.I111I		NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	111	Extracellular (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		TTGCTGCTGGGATTGGGAGAT	0.418													30	83					0	0	0.000491102	0	0
PPFIA2	8499	broad.mit.edu	37	12	81693152	81693152	+	Silent	SNP	A	C	C			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:81693152A>C	uc001szo.1	-	23	2813	c.2652T>G	c.(2650-2652)CTT>CTG	p.L884L	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	810										ovary(3)|lung(2)|pancreas(1)	6						CTTCTTCAAGAAGTTCATGCC	0.383													3	8					0	0	0.00024832	0	0
ANO4	121601	broad.mit.edu	37	12	101505378	101505378	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:101505378C>T	uc010svm.1	+	24	2912	c.2340C>T	c.(2338-2340)CTC>CTT	p.L780L	ANO4_uc001thw.2_Silent_p.L745L|ANO4_uc001thx.2_Silent_p.L780L|ANO4_uc001thy.2_Silent_p.L300L	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	780	Helical; (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TTGGAATTCTCTCTGTTATCA	0.368										HNSCC(74;0.22)			21	51					0	0	0.000295444	0	0
PAH	5053	broad.mit.edu	37	12	103310870	103310870	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:103310870C>T	uc001tjq.1	-	2	511	c.39G>A	c.(37-39)AGG>AGA	p.R13R	PAH_uc010swc.1_Silent_p.R13R	NM_000277	NP_000268	P00439	PH4H_HUMAN	phenylalanine hydroxylase	13					catecholamine biosynthetic process|L-phenylalanine catabolic process|neurotransmitter biosynthetic process	cytosol	phenylalanine 4-monooxygenase activity			ovary(4)	4					Epinephrine(DB00668)|L-Phenylalanine(DB00120)|Levodopa(DB01235)|Norepinephrine(DB00368)|Tetrahydrobiopterin(DB00360)	CAGAGAGTTTCCTGCCCAAGC	0.572													8	51					0	0	3.86212e-05	0	0
NUAK1	9891	broad.mit.edu	37	12	106464638	106464638	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:106464638C>T	uc001tlj.1	-	6	2126	c.746G>A	c.(745-747)GGA>GAA	p.G249E		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	249	Protein kinase.						ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						GGGCATTGTTCCATAAACAAG	0.537													9	34					0	0	0.000274275	0	0
DNAH10	196385	broad.mit.edu	37	12	124315125	124315125	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr12:124315125T>C	uc001uft.3	+	25	4095	c.4070T>C	c.(4069-4071)GTC>GCC	p.V1357A		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1357	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AAAACGTCTGTCTTTTTTGAA	0.373													33	70					0	0	0.000191422	0	0
DKFZp686A1627	266695	broad.mit.edu	37	13	19622294	19622294	+	RNA	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr13:19622294G>A	uc001umb.1	-	10		c.3517C>T				NR_002801				Homo sapiens mRNA; cDNA DKFZp686A1627 (from clone DKFZp686A1627).												0						AGCAGGCGACGATGGGGGTGG	0.577													5	7					0	0	0.000602214	0	0
FLT1	2321	broad.mit.edu	37	13	28980009	28980009	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr13:28980009C>T	uc001usb.3	-	11	1744	c.1459G>A	c.(1459-1461)GAA>AAA	p.E487K	FLT1_uc010aar.1_Missense_Mutation_p.E487K|FLT1_uc001usc.3_Missense_Mutation_p.E487K|FLT1_uc010aas.1_RNA|FLT1_uc010aat.1_5'UTR|FLT1_uc010tdp.1_Missense_Mutation_p.E487K	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	487	Ig-like C2-type 5.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	AAGGACTCTTCATTATTGGAA	0.388													19	71					0	0	9.7654e-05	0	0
FRY	10129	broad.mit.edu	37	13	32818254	32818254	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr13:32818254C>T	uc001utx.2	+	47	7259	c.6763C>T	c.(6763-6765)CTT>TTT	p.L2255F	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2255					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CTACATGGACCTTTCTGTCGT	0.498													13	45					0	0	0.000151284	0	0
C13orf23	80209	broad.mit.edu	37	13	39587605	39587605	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr13:39587605G>A	uc001uwy.2	-	11	2657	c.1784C>T	c.(1783-1785)TCA>TTA	p.S595L	C13orf23_uc001uwz.2_Missense_Mutation_p.S573L	NM_025138	NP_079414	Q86XN7	CM023_HUMAN	hypothetical protein LOC80209 isoform 1	595	Ser-rich.									ovary(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)	5		Lung NSC(96;6.01e-07)|Breast(139;0.00394)|Prostate(109;0.00676)|Lung SC(185;0.0548)|Hepatocellular(188;0.114)		all cancers(112;3.7e-08)|Epithelial(112;4.28e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00114)|BRCA - Breast invasive adenocarcinoma(63;0.00366)|GBM - Glioblastoma multiforme(144;0.0146)		AGGGGTAGATGAAATATGCAG	0.542													40	110					0	0	0.000589545	0	0
MTRF1	9617	broad.mit.edu	37	13	41834968	41834968	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr13:41834968G>A	uc001uxx.2	-	4	546	c.76C>T	c.(76-78)CAT>TAT	p.H26Y	MTRF1_uc001uxy.2_Missense_Mutation_p.H26Y|MTRF1_uc001uxz.2_5'UTR|MTRF1_uc010tff.1_Missense_Mutation_p.H39Y|MTRF1_uc001uyc.1_Missense_Mutation_p.H26Y	NM_004294	NP_004285	O75570	RF1M_HUMAN	mitochondrial translational release factor 1	26					regulation of translational termination	mitochondrion	translation release factor activity, codon specific				0		Lung NSC(96;4.52e-06)|Breast(139;0.00123)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)|Ovarian(182;0.125)		OV - Ovarian serous cystadenocarcinoma(117;4.24e-10)|all cancers(112;2.05e-09)|Epithelial(112;2.48e-09)|GBM - Glioblastoma multiforme(144;0.00115)|BRCA - Breast invasive adenocarcinoma(63;0.0721)|KIRC - Kidney renal clear cell carcinoma(186;0.248)		TGATGAGAATGGAGCTGGATG	0.378													12	29					0	0	0.000219431	0	0
RCBTB1	55213	broad.mit.edu	37	13	50134129	50134129	+	Silent	SNP	G	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr13:50134129G>T	uc001vde.1	-	5	630	c.369C>A	c.(367-369)ACC>ACA	p.T123T		NM_018191	NP_060661	Q8NDN9	RCBT1_HUMAN	regulator of chromosome condensation (RCC1) and	123	RCC1 2.				cell cycle|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(1)	1		Lung NSC(96;2.1e-05)|Breast(56;0.00015)|Prostate(109;0.00314)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;4.7e-09)		TCAAGAGATTGGTACAGACCT	0.493													10	182					0.000151284	0.0025756	0.000151284	1	0
ARL11	115761	broad.mit.edu	37	13	50204873	50204873	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr13:50204873C>T	uc001vdf.1	+	2	436	c.290C>T	c.(289-291)CCC>CTC	p.P97L		NM_138450	NP_612459	Q969Q4	ARL11_HUMAN	ADP-ribosylation factor-like 11	97					small GTPase mediated signal transduction	intracellular	GTP binding|protein binding				0		Lung NSC(96;2.1e-05)|Breast(56;0.00015)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.119)|Kidney(9;0.169)	GBM - Glioblastoma multiforme(99;1.67e-09)		GCCCGCTTACCCGAGTCGGCG	0.607													15	56					0	0	0.000566183	0	0
GPC5	2262	broad.mit.edu	37	13	92408650	92408650	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr13:92408650G>A	uc010tif.1	+	5	1622	c.1256G>A	c.(1255-1257)TGG>TAG	p.W419*		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	419						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				CTTCCCTGCTGGAATGGAGAA	0.388													19	60					0	0	0.000295444	0	0
F7	2155	broad.mit.edu	37	13	113773099	113773099	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr13:113773099C>T	uc001vsv.2	+	9	1229	c.1178C>T	c.(1177-1179)TCG>TTG	p.S393L	F7_uc001vsw.2_Missense_Mutation_p.S371L|F7_uc010tjt.1_Missense_Mutation_p.S324L	NM_000131	NP_000122	P08709	FA7_HUMAN	coagulation factor VII isoform a precursor	393	Peptidase S1.				anti-apoptosis|blood coagulation, extrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of leukocyte chemotaxis|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of positive chemotaxis|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|glycoprotein binding|serine-type endopeptidase activity				0	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0364)|all_epithelial(44;0.0393)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0737)|Epithelial(84;0.213)|BRCA - Breast invasive adenocarcinoma(86;0.218)		Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Menadione(DB00170)	GCCGGCTACTCGGATGGCAGC	0.632													8	20					0	0	0.000157383	0	0
ZNF828	283489	broad.mit.edu	37	13	115089779	115089779	+	Silent	SNP	G	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr13:115089779G>T	uc010ahb.2	+	3	791	c.462G>T	c.(460-462)CTG>CTT	p.L154L	ZNF828_uc001vuv.2_Silent_p.L154L|ZNF828_uc010tko.1_Silent_p.L154L	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	154	Pro-rich.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		TTACTCCCCTGGAGCCTCAGA	0.483													8	145					0.000274275	0.00463112	0.000274275	1	0
OR4K1	79544	broad.mit.edu	37	14	20404440	20404440	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr14:20404440G>A	uc001vwj.1	+	1	615	c.615G>A	c.(613-615)CTG>CTA	p.L205L		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	205	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		ACAGTGGCCTGATATCATTGA	0.438													15	41					0	0	0.000566183	0	0
OR4K15	81127	broad.mit.edu	37	14	20444148	20444148	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr14:20444148G>A	uc010tkx.1	+	1	471	c.471G>A	c.(469-471)ATG>ATA	p.M157I		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	157	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCCACTACATGACAGTCATGA	0.453													38	97					0	0	0.000159656	0	0
OR4E2	26686	broad.mit.edu	37	14	22133973	22133973	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr14:22133973G>A	uc010tmd.1	+	1	677	c.677G>A	c.(676-678)CGA>CAA	p.R226Q		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		GTTTCTCTTCGAAAACACTCA	0.502													18	49					0	0	0.000229342	0	0
FANCM	57697	broad.mit.edu	37	14	45628328	45628328	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr14:45628328G>T	uc001wwd.3	+	9	1525	c.1426G>T	c.(1426-1428)GAG>TAG	p.E476*	FANCM_uc001wwc.2_Nonsense_Mutation_p.E476*|FANCM_uc010anf.2_Nonsense_Mutation_p.E450*|FANCM_uc001wwe.3_Nonsense_Mutation_p.E81*	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	476	Helicase C-terminal.				DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						GAAACGTGATGAGACCCGAGT	0.303								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				8	10					7.48243e-07	1.29899e-05	0.000442599	1	0
SDCCAG1	9147	broad.mit.edu	37	14	50298965	50298965	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr14:50298965G>A	uc001wxc.2	-	9	834	c.766C>T	c.(766-768)CCA>TCA	p.P256S	SDCCAG1_uc010anj.1_Missense_Mutation_p.P256S|SDCCAG1_uc010tqi.1_Missense_Mutation_p.P256S|SDCCAG1_uc001wxe.2_Missense_Mutation_p.P214S|SDCCAG1_uc001wxd.1_5'Flank|SDCCAG1_uc010anq.1_Missense_Mutation_p.P27S	NM_004713	NP_004704	O60524	NEMF_HUMAN	serologically defined colon cancer antigen 1	256						cytoplasm|nucleus					0	all_epithelial(31;0.000822)|Breast(41;0.0117)	all_lung(585;1.02e-05)		OV - Ovarian serous cystadenocarcinoma(311;5.99e-34)		TCCAAGCTTGGTTTTATTTCT	0.294													12	64					0	0	0.000219431	0	0
SYT16	83851	broad.mit.edu	37	14	62567122	62567122	+	Silent	SNP	A	G	G			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr14:62567122A>G	uc001xfu.1	+	6	1832	c.1635A>G	c.(1633-1635)GGA>GGG	p.G545G	SYT16_uc010tse.1_Silent_p.G103G	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	545	C2 2.									central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		ATACATATGGAAAACTCTTTC	0.433													4	12					0	0	0.000602214	0	0
PLEKHG3	26030	broad.mit.edu	37	14	65209922	65209922	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr14:65209922G>A	uc001xho.1	+	17	3430	c.3161G>A	c.(3160-3162)TGC>TAC	p.C1054Y	PLEKHG3_uc001xhn.1_Missense_Mutation_p.C998Y|PLEKHG3_uc001xhp.2_Missense_Mutation_p.C1175Y|PLEKHG3_uc010aqh.1_Missense_Mutation_p.C596Y|PLEKHG3_uc001xhq.1_Missense_Mutation_p.C559Y	NM_015549	NP_056364	A1L390	PKHG3_HUMAN	pleckstrin homology domain containing, family G,	1054					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)	1				all cancers(60;0.00802)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)|BRCA - Breast invasive adenocarcinoma(234;0.0485)		CGTGAGCTCTGCTCCAAGTAT	0.607													13	55					0	0	0.000219431	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634942	70634942	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr14:70634942C>T	uc001xly.2	-	2	952	c.198G>A	c.(196-198)GAG>GAA	p.E66E	SLC8A3_uc001xlw.2_Silent_p.E66E|SLC8A3_uc001xlx.2_Silent_p.E66E|SLC8A3_uc001xlz.2_Silent_p.E66E|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	66	Extracellular (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		GGGAAGGGTTCTCCGGGTACC	0.547													11	32					0	0	6.40141e-05	0	0
KCNK10	54207	broad.mit.edu	37	14	88652268	88652268	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr14:88652268C>T	uc001xwo.2	-	7	1685	c.1228G>A	c.(1228-1230)GCC>ACC	p.A410T	KCNK10_uc001xwm.2_Missense_Mutation_p.A415T|KCNK10_uc001xwn.2_Missense_Mutation_p.A415T	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	410	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						TGGGATGAGGCCTTGAAGCGG	0.662													16	48					0	0	0.000132079	0	0
SERPINA10	51156	broad.mit.edu	37	14	94754765	94754765	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr14:94754765G>A	uc001yct.2	-	3	1316	c.850C>T	c.(850-852)CGT>TGT	p.R284C	SERPINA10_uc001ycu.3_Missense_Mutation_p.R284C	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	284					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		ACATGACAACGAAAATTCTTG	0.507													16	45					0	0	0.000308642	0	0
AHNAK2	113146	broad.mit.edu	37	14	105413031	105413031	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr14:105413031C>T	uc010axc.1	-	7	8877	c.8757G>A	c.(8755-8757)AAG>AAA	p.K2919K	AHNAK2_uc001ypx.2_Silent_p.K2819K	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2919						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCTTGGGGCCCTTGACGTCTA	0.652													58	164					0	0	0.000147903	0	0
RYR3	6263	broad.mit.edu	37	15	33855189	33855189	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:33855189G>A	uc001zhi.2	+	11	1194	c.1124G>A	c.(1123-1125)CGC>CAC	p.R375H	RYR3_uc010bar.2_Missense_Mutation_p.R375H	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	375	Cytoplasmic (By similarity).|MIR 5.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		AAAACTTCCCGCCTGGGACCT	0.448													30	73					0	0	0.000409698	0	0
SLC12A6	9990	broad.mit.edu	37	15	34529692	34529692	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:34529692G>A	uc001zhw.2	-	21	3026	c.2862C>T	c.(2860-2862)ATC>ATT	p.I954I	SLC12A6_uc001zhv.2_Silent_p.I903I|SLC12A6_uc001zhx.2_Silent_p.I939I|SLC12A6_uc001zhy.2_RNA|SLC12A6_uc001zhz.2_RNA|SLC12A6_uc001zia.2_Silent_p.I895I|SLC12A6_uc001zib.2_Silent_p.I945I|SLC12A6_uc001zic.2_Silent_p.I954I|SLC12A6_uc010bau.2_Silent_p.I954I|SLC12A6_uc001zid.2_Silent_p.I895I|SLC12A6_uc001zht.2_RNA|SLC12A6_uc001zhu.2_Silent_p.I766I	NM_133647	NP_598408	Q9UHW9	S12A6_HUMAN	solute carrier family 12, member 6 isoform a	954	Cytoplasmic (Potential).				angiogenesis|cellular hypotonic salinity response|potassium ion transport|sodium ion transport	basolateral plasma membrane|integral to membrane	potassium:chloride symporter activity			central_nervous_system(5)|ovary(1)|skin(1)	7		all_lung(180;2.78e-08)		all cancers(64;3.43e-17)|GBM - Glioblastoma multiforme(113;2.6e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0301)	Potassium Chloride(DB00761)	TCTTCATTTGGATACTGTTGT	0.448													16	48					0	0	7.07596e-05	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40282489	40282489	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:40282489G>A	uc001zkm.1	+	16	2592	c.2542G>A	c.(2542-2544)GAT>AAT	p.D848N	EIF2AK4_uc010bbj.1_Missense_Mutation_p.D549N|EIF2AK4_uc001zkn.1_5'Flank	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	848	Protein kinase 2.	Proton acceptor (By similarity).			translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		GATTCACCGGGATTTGAAGCC	0.378													43	140					0	0	0.000147903	0	0
ZFP106	64397	broad.mit.edu	37	15	42743105	42743105	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:42743105G>A	uc001zpw.2	-	2	1631	c.1296C>T	c.(1294-1296)TGC>TGT	p.C432C	ZFP106_uc001zpu.2_5'Flank|ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_Silent_p.C215C|ZFP106_uc001zpy.1_Silent_p.C455C	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	432						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		CTGCAGTGGGGCACTGTCTCA	0.433													62	140					0	0	0.000147903	0	0
CATSPER2	117155	broad.mit.edu	37	15	43928403	43928403	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:43928403G>A	uc001zsh.2	-	8	1072	c.857C>T	c.(856-858)TCC>TTC	p.S286F	CATSPER2_uc010bdm.2_RNA|CATSPER2_uc001zsi.2_Missense_Mutation_p.S286F|CATSPER2_uc001zsj.2_Missense_Mutation_p.S286F	NM_172095	NP_742093	Q96P56	CTSR2_HUMAN	sperm-associated cation channel 2 isoform 2	286					cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			ovary(1)	1		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		TGTTACCAGGGAATTCGGGAG	0.423													13	53					0	0	9.7654e-05	0	0
CATSPER2	117155	broad.mit.edu	37	15	43931128	43931128	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:43931128C>G	uc001zsh.2	-	7	1031	c.816G>C	c.(814-816)CAG>CAC	p.Q272H	CATSPER2_uc010bdm.2_RNA|CATSPER2_uc001zsi.2_Missense_Mutation_p.Q272H|CATSPER2_uc001zsj.2_Missense_Mutation_p.Q272H	NM_172095	NP_742093	Q96P56	CTSR2_HUMAN	sperm-associated cation channel 2 isoform 2	272	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			ovary(1)	1		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		ACTCCAGGTCCTGACGAGGTG	0.488													3	56					0	0	0.00024832	0	0
NEDD4	4734	broad.mit.edu	37	15	56155176	56155176	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:56155176G>A	uc002adj.2	-	5	2166	c.1866C>T	c.(1864-1866)ATC>ATT	p.I622I	NEDD4_uc002adl.2_Silent_p.I203I|NEDD4_uc002adi.2_Silent_p.I550I|NEDD4_uc010ugj.1_Silent_p.I606I|NEDD4_uc010bfm.2_Silent_p.I605I|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	622	WW 1.|Mediates interaction with TNIK (By similarity).				development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		TCCTTCCAAGGATATCCTGCC	0.463													25	87					0	0	9.22233e-05	0	0
ZNF280D	54816	broad.mit.edu	37	15	56981258	56981258	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:56981258G>A	uc002adu.2	-	9	978	c.761C>T	c.(760-762)CCT>CTT	p.P254L	ZNF280D_uc002adv.2_Missense_Mutation_p.P241L|ZNF280D_uc010bfq.2_Missense_Mutation_p.P254L|ZNF280D_uc002adw.1_Missense_Mutation_p.P282L|ZNF280D_uc010bfr.1_RNA	NM_017661	NP_060131	Q6N043	Z280D_HUMAN	suppressor of hairy wing homolog 4 isoform 1	254					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		ATTTTTCAAAGGATCCAAAAG	0.284													19	73					0	0	0.000175454	0	0
CGNL1	84952	broad.mit.edu	37	15	57731149	57731149	+	Missense_Mutation	SNP	G	A	A	rs141629614		TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:57731149G>A	uc002aeg.2	+	2	1028	c.952G>A	c.(952-954)GAA>AAA	p.E318K	CGNL1_uc010bfw.2_Missense_Mutation_p.E318K	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	318	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		GGATGATCAGGAATGTGCCAT	0.517													8	34					0	0	6.40141e-05	0	0
AQP9	366	broad.mit.edu	37	15	58430858	58430858	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:58430858G>A	uc002aez.2	+	1	451	c.94G>A	c.(94-96)GGC>AGC	p.G32S	ALDH1A2_uc010ugw.1_Intron|AQP9_uc010ugx.1_Intron	NM_020980	NP_066190	O43315	AQP9_HUMAN	aquaporin 9	32	Helical; (Potential).				cellular response to cAMP|excretion|immune response|metabolic process|response to mercury ion|response to osmotic stress|water homeostasis	integral to plasma membrane|intracellular membrane-bounded organelle	amine transmembrane transporter activity|carboxylic acid transmembrane transporter activity|glycerol channel activity|porin activity|purine base transmembrane transporter activity|pyrimidine base transmembrane transporter activity|water channel activity			ovary(1)	1				GBM - Glioblastoma multiforme(80;0.16)		TGAGTTCTTGGGCACGTTCAT	0.473													25	80					0	0	0.000339439	0	0
AQP9	366	broad.mit.edu	37	15	58465319	58465319	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:58465319G>A	uc002aez.2	+	3	648	c.291G>A	c.(289-291)ATG>ATA	p.M97I	ALDH1A2_uc010ugw.1_Intron|AQP9_uc010ugx.1_Missense_Mutation_p.M32I	NM_020980	NP_066190	O43315	AQP9_HUMAN	aquaporin 9	97	Cytoplasmic (Potential).				cellular response to cAMP|excretion|immune response|metabolic process|response to mercury ion|response to osmotic stress|water homeostasis	integral to plasma membrane|intracellular membrane-bounded organelle	amine transmembrane transporter activity|carboxylic acid transmembrane transporter activity|glycerol channel activity|porin activity|purine base transmembrane transporter activity|pyrimidine base transmembrane transporter activity|water channel activity			ovary(1)	1				GBM - Glioblastoma multiforme(80;0.16)		TTGGACGGATGAAATGGTTCA	0.478													65	196					0	0	0.000147903	0	0
AQP9	366	broad.mit.edu	37	15	58465346	58465346	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:58465346G>A	uc002aez.2	+	3	675	c.318G>A	c.(316-318)GTG>GTA	p.V106V	ALDH1A2_uc010ugw.1_Intron|AQP9_uc010ugx.1_Silent_p.V41V	NM_020980	NP_066190	O43315	AQP9_HUMAN	aquaporin 9	106	Cytoplasmic (Potential).				cellular response to cAMP|excretion|immune response|metabolic process|response to mercury ion|response to osmotic stress|water homeostasis	integral to plasma membrane|intracellular membrane-bounded organelle	amine transmembrane transporter activity|carboxylic acid transmembrane transporter activity|glycerol channel activity|porin activity|purine base transmembrane transporter activity|pyrimidine base transmembrane transporter activity|water channel activity			ovary(1)	1				GBM - Glioblastoma multiforme(80;0.16)		CATTTTATGTGGGAGCCCAGT	0.488													51	165					0	0	0.000147903	0	0
MYO9A	4649	broad.mit.edu	37	15	72190967	72190967	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:72190967G>A	uc002atl.3	-	25	4350	c.3877C>T	c.(3877-3879)CGT>TGT	p.R1293C	MYO9A_uc010biq.2_Missense_Mutation_p.R913C|MYO9A_uc002atn.1_Missense_Mutation_p.R1274C|MYO9A_uc002atk.2_Missense_Mutation_p.R17C|MYO9A_uc002atm.1_Missense_Mutation_p.R17C	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1293	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						CCAAGAGAACGAACTTTCAGC	0.463													21	52					0	0	0.000295444	0	0
CCDC33	80125	broad.mit.edu	37	15	74625065	74625065	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:74625065G>A	uc002axo.2	+	16	2211	c.1817G>A	c.(1816-1818)GGA>GAA	p.G606E	CCDC33_uc002axp.2_Missense_Mutation_p.G428E|CCDC33_uc002axq.2_Missense_Mutation_p.G199E|CCDC33_uc002axr.2_Missense_Mutation_p.G199E	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	809							protein binding			ovary(3)|skin(2)	5						GGTTCTATGGGAGAGAACCTG	0.582													38	97					0	0	0.000147903	0	0
SGK269	79834	broad.mit.edu	37	15	77407410	77407410	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:77407410G>A	uc002bcm.2	-	6	4637	c.4329C>T	c.(4327-4329)TCC>TCT	p.S1443S		NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1443	Protein kinase.				cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		TCTCTTTCTGGGATGATGCTG	0.498													33	80					0	0	0.000191422	0	0
BLM	641	broad.mit.edu	37	15	91293016	91293017	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:91293016_91293017CC>AA	uc002bpr.2	+	3	615_616	c.518_519CC>AA	c.(517-519)CCC>CAA	p.P173Q	BLM_uc010uqh.1_Missense_Mutation_p.P173Q|BLM_uc010uqi.1_5'UTR|BLM_uc010bnx.2_Missense_Mutation_p.P173Q	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	173					double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			GTTACACCACCCCAAAGTCACT	0.347			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				13	498					0	0	6.4e-05	0	0
SV2B	9899	broad.mit.edu	37	15	91835624	91835624	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr15:91835624G>A	uc002bqv.2	+	12	2285	c.1894G>A	c.(1894-1896)GGA>AGA	p.G632R	SV2B_uc010uqv.1_Missense_Mutation_p.G481R|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	632	Helical; (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			CATTCTCAATGGATTATGCAA	0.448													113	337					0	0	0.000147903	0	0
SETD1A	9739	broad.mit.edu	37	16	30976275	30976275	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr16:30976275C>T	uc002ead.1	+	7	1898	c.1212C>T	c.(1210-1212)CGC>CGT	p.R404R		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	404	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						CAGCTGAGCGCTTCCCACCTT	0.652													27	74					0	0	0.000227799	0	0
TRAPPC2L	51693	broad.mit.edu	37	16	88926378	88926378	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr16:88926378C>T	uc002fmc.2	+	4	425	c.372C>T	c.(370-372)TCC>TCT	p.S124S	TRAPPC2L_uc010cie.2_RNA|TRAPPC2L_uc002fmd.3_Silent_p.S124S|TRAPPC2L_uc002fme.3_Silent_p.S94S|TRAPPC2L_uc002fmf.2_Silent_p.S93S|uc002fmg.2_5'Flank	NM_016209	NP_057293	Q9UL33	TPC2L_HUMAN	trafficking protein particle complex 2-like	124					ER to Golgi vesicle-mediated transport	endoplasmic reticulum|Golgi apparatus|perinuclear region of cytoplasm					0				BRCA - Breast invasive adenocarcinoma(80;0.0477)		GCATCCAGTCCAGGTGGGCCC	0.498													9	24					0	0	0.000274275	0	0
SHPK	23729	broad.mit.edu	37	17	3539424	3539424	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:3539424G>A	uc002fvz.1	-	1	193	c.90C>T	c.(88-90)TCC>TCT	p.S30S	CTNS_uc002fwa.2_5'Flank|CTNS_uc002fwb.2_5'Flank|CTNS_uc010ckj.2_5'Flank|CTNS_uc010vrv.1_5'Flank|CTNS_uc010vrw.1_5'Flank	NM_013276	NP_037408	Q9UHJ6	SHPK_HUMAN	carbohydrate kinase-like	30					carbohydrate metabolic process	cytoplasm	ATP binding|sedoheptulokinase activity			ovary(1)	1				COAD - Colon adenocarcinoma(5;0.0828)		CTGCGAACCCGGATGGGTCGT	0.716													5	17					0	0	0.000602214	0	0
PIK3R5	23533	broad.mit.edu	37	17	8791943	8791943	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:8791943C>T	uc002glt.2	-	10	1228	c.1161G>A	c.(1159-1161)ATG>ATA	p.M387I	PIK3R5_uc010vuz.1_Missense_Mutation_p.M387I|PIK3R5_uc002glu.3_Missense_Mutation_p.M1I|PIK3R5_uc010coa.1_3'UTR|PIK3R5_uc010cob.1_Missense_Mutation_p.M1I	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	387					platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						AGCCGCTGTCCATGCCATCAG	0.662													8	21					0	0	0.000157383	0	0
MYH4	4622	broad.mit.edu	37	17	10351754	10351754	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:10351754G>A	uc002gmn.2	-	33	4726	c.4615C>T	c.(4615-4617)CAT>TAT	p.H1539Y	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1539	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CTCTTCTCATGATCAAGTTGT	0.363													8	29					0	0	0.000157383	0	0
MYH4	4622	broad.mit.edu	37	17	10358061	10358061	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:10358061C>T	uc002gmn.2	-	22	2613	c.2502G>A	c.(2500-2502)ATG>ATA	p.M834I	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	834					muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						AATACAGCTTCATCCAGGGCC	0.438													19	70					0	0	0.000132079	0	0
DNAH9	1770	broad.mit.edu	37	17	11726147	11726147	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:11726147C>T	uc002gne.2	+	48	9110	c.9042C>T	c.(9040-9042)TTC>TTT	p.F3014F	DNAH9_uc010coo.2_Silent_p.F2308F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3014	AAA 4 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TTAGCAAATTCATGGCCTTTG	0.433													25	75					0	0	9.22233e-05	0	0
MYOCD	93649	broad.mit.edu	37	17	12666526	12666526	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:12666526C>T	uc002gnn.2	+	13	2681	c.2382C>T	c.(2380-2382)ATC>ATT	p.I794I	MYOCD_uc002gno.2_Silent_p.I842I|MYOCD_uc002gnq.2_Silent_p.I518I	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	794					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		GCAGCCAGATCCCCTTTGATC	0.483													25	81					0	0	0.000147802	0	0
RNF112	7732	broad.mit.edu	37	17	19315892	19315892	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:19315892C>T	uc010vyw.1	+	3	376	c.177C>T	c.(175-177)ATC>ATT	p.I59I	RNF112_uc010vyu.1_Silent_p.I59I|RNF112_uc010vyv.1_Silent_p.I59I|RNF112_uc010vyx.1_Silent_p.I11I	NM_007148	NP_009079	Q7Z5V9	Q7Z5V9_HUMAN	ring finger protein 112	59							GTP binding|GTPase activity|zinc ion binding			ovary(2)	2						CCTGCTCCATCTGCCTGGAGA	0.657													7	13					0	0	0.000157383	0	0
CCDC144C	348254	broad.mit.edu	37	17	20294989	20294989	+	RNA	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:20294989C>T	uc010cqy.1	+	13		c.3712C>T				NR_023380				Homo sapiens cDNA FLJ59693 complete cds, moderately similar to Ankyrin repeat domain-containing protein 26.												0						TATGTTAGAACGTGGTGAAGC	0.358													13	64					0	0	0.000151284	0	0
ATAD5	79915	broad.mit.edu	37	17	29220966	29220966	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:29220966G>A	uc002hfs.1	+	21	5441	c.5095G>A	c.(5095-5097)GGA>AGA	p.G1699R		NM_024857	NP_079133	Q96QE3	ATAD5_HUMAN	ATPase family, AAA domain containing 5	1699					response to DNA damage stimulus	nucleus	ATP binding|nucleoside-triphosphatase activity			ovary(3)	3		all_hematologic(16;0.0202)|Acute lymphoblastic leukemia(14;0.0238)|Myeloproliferative disorder(56;0.0393)				GAGTAATGATGGATGGACTTC	0.378													35	72					0	0	0.000191422	0	0
GAS2L2	246176	broad.mit.edu	37	17	34074961	34074961	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:34074961G>A	uc002hjv.1	-	4	767	c.739C>T	c.(739-741)CTC>TTC	p.L247F		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	247	GAR.				cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TGGTTCCGGAGGATCTGAGGG	0.632											OREG0024328	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	23					0	0	8.12818e-05	0	0
DDX52	11056	broad.mit.edu	37	17	35986129	35986129	+	Silent	SNP	T	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:35986129T>A	uc002hoi.1	-	8	986	c.948A>T	c.(946-948)GTA>GTT	p.V316V	DDX52_uc002hoh.1_Silent_p.V208V	NM_007010	NP_008941	Q9Y2R4	DDX52_HUMAN	ATP-dependent RNA helicase ROK1 isoform a	316	Helicase ATP-binding.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|skin(1)	2		Breast(25;0.00637)|Ovarian(249;0.15)				ATTCGTCTACTACAAGCCACT	0.448													5	19					0	0	0.000602214	0	0
KRT31	3881	broad.mit.edu	37	17	39551875	39551875	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:39551875C>T	uc002hwn.2	-	4	642	c.589G>A	c.(589-591)GAG>AAG	p.E197K	KRT31_uc010cxn.2_Missense_Mutation_p.E197K	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	197	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				GTATTGACCTCCTATGGATGC	0.493													9	25					0	0	3.86212e-05	0	0
KRT37	8688	broad.mit.edu	37	17	39578598	39578598	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:39578598C>T	uc002hwp.1	-	4	868	c.821G>A	c.(820-822)GGG>GAG	p.G274E	uc002hwo.1_Intron	NM_003770	NP_003761	O76014	KRT37_HUMAN	keratin 37	274	Coil 2.|Rod.					intermediate filament	structural molecule activity			skin(1)	1		Breast(137;0.000496)				CCGCATCTCCCCCAACACCCT	0.572													38	89					0	0	0.000191422	0	0
PRR15L	79170	broad.mit.edu	37	17	46030312	46030312	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:46030312C>T	uc002imp.2	-	2	406	c.289G>A	c.(289-291)GAG>AAG	p.E97K		NM_024320	NP_077296	Q9BU68	PR15L_HUMAN	ATPase family, AAA domain containing 4	97										ovary(1)	1						CGTCCTTCCTCGTGATCATCA	0.557													17	52					0	0	0.000175454	0	0
DGKE	8526	broad.mit.edu	37	17	54939580	54939580	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:54939580C>T	uc002iur.2	+	11	1672	c.1492C>T	c.(1492-1494)CCT>TCT	p.P498S	DGKE_uc002ius.1_Missense_Mutation_p.P498S	NM_003647	NP_003638	P52429	DGKE_HUMAN	diacylglycerol kinase epsilon	498					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|phospholipid biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding|protein binding			breast(2)	2	Breast(9;3.59e-07)					ACTGGCTAATCCTTTTCGAAT	0.393													8	38					0	0	6.40141e-05	0	0
OR4D1	26689	broad.mit.edu	37	17	56232592	56232592	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:56232592C>T	uc010wno.1	+	1	78	c.78C>T	c.(76-78)TTC>TTT	p.F26F	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCCAGAAATTCCTGTTCCTTC	0.478													40	119					0	0	0.000319135	0	0
MPO	4353	broad.mit.edu	37	17	56355339	56355339	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:56355339C>T	uc002ivu.1	-	7	1230	c.1053G>A	c.(1051-1053)AGG>AGA	p.R351R		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	351					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	TGCGCAGGTTCCTGGCCAGGG	0.637													13	38					0	0	0.000151284	0	0
BCAS3	54828	broad.mit.edu	37	17	58786684	58786684	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:58786684C>T	uc002iyv.3	+	5	428	c.319C>T	c.(319-321)CCT>TCT	p.P107S	BCAS3_uc010wow.1_Intron|BCAS3_uc002iyu.3_Missense_Mutation_p.P107S|BCAS3_uc002iyw.3_Missense_Mutation_p.P103S	NM_001099432	NP_001092902	Q9H6U6	BCAS3_HUMAN	breast carcinoma amplified sequence 3 isoform 1	107	WD 1.					nucleus				ovary(2)|central_nervous_system(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(1;3.11e-12)|Epithelial(12;8.2e-07)|all cancers(12;5.33e-06)			CTGGAGCATCCCTGTAAGTAC	0.338													15	20					0	0	0.000566183	0	0
TEX2	55852	broad.mit.edu	37	17	62290901	62290901	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:62290901G>A	uc002jec.2	-	2	850	c.677C>T	c.(676-678)TCC>TTC	p.S226F	TEX2_uc002jed.2_Missense_Mutation_p.S226F|TEX2_uc002jee.2_Missense_Mutation_p.S226F	NM_018469	NP_060939	Q8IWB9	TEX2_HUMAN	testis expressed sequence 2	226					signal transduction|sphingolipid metabolic process	integral to membrane				ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;1.33e-10)	READ - Rectum adenocarcinoma(1115;0.0689)		CTCCTGCCGGGAAGTGTCCGT	0.527													25	68					0	0	0.000117367	0	0
HELZ	9931	broad.mit.edu	37	17	65124825	65124826	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:65124825_65124826CG>AT	uc010wqk.1	-	24	3518_3519	c.3331_3332CG>AT	c.(3331-3333)CGG>ATG	p.R1111M	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Missense_Mutation_p.R1110M	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					TCTTAGAGCCCGGGGGATAAAT	0.436													6	179					0	0	6.4e-05	0	0
PGS1	9489	broad.mit.edu	37	17	76396844	76396844	+	Missense_Mutation	SNP	C	T	T	rs79039614		TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr17:76396844C>T	uc002jvm.2	+	6	800	c.788C>T	c.(787-789)ACG>ATG	p.T263M	PGS1_uc010wtt.1_RNA|PGS1_uc010dho.2_RNA|PGS1_uc002jvn.2_Translation_Start_Site|PGS1_uc002jvo.2_RNA|PGS1_uc002jvp.1_Translation_Start_Site	NM_024419	NP_077733	Q32NB8	PGPS1_HUMAN	phosphatidylglycerophosphate synthase 1	263					phospholipid biosynthetic process	endoplasmic reticulum|mitochondrion	ATP binding|CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity				0			BRCA - Breast invasive adenocarcinoma(99;0.00144)|OV - Ovarian serous cystadenocarcinoma(97;0.031)			GACTTCTTCACGGAGCTGGTG	0.607													26	46					0	0	0.000184323	0	0
POTEC	388468	broad.mit.edu	37	18	14533112	14533112	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr18:14533112C>T	uc010dln.2	-	5	1457	c.1003G>A	c.(1003-1005)GAT>AAT	p.D335N	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	335										skin(3)	3						CCAGATAGATCTTGAGAAGAT	0.373													43	134					0	0	0.000147903	0	0
ASXL3	80816	broad.mit.edu	37	18	31323374	31323374	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr18:31323374C>T	uc010dmg.1	+	12	3617	c.3562C>T	c.(3562-3564)CCA>TCA	p.P1188S	ASXL3_uc002kxq.2_Missense_Mutation_p.P895S	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1188					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GTCTCTTAACCCAAGTAAACT	0.428													8	26					0	0	0.000274275	0	0
ME2	4200	broad.mit.edu	37	18	48447032	48447032	+	Silent	SNP	G	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr18:48447032G>T	uc002ley.2	+	9	1102	c.846G>T	c.(844-846)GGG>GGT	p.G282G	ME2_uc010dpd.2_Silent_p.G282G	NM_002396	NP_002387	P23368	MAOM_HUMAN	malic enzyme 2, NAD(+)-dependent, mitochondrial	282					malate metabolic process	mitochondrial matrix	electron carrier activity|malate dehydrogenase (decarboxylating) activity|malate dehydrogenase (oxaloacetate-decarboxylating) activity|metal ion binding|NAD binding				0		Colorectal(6;0.0273)|all_epithelial(6;0.118)		Colorectal(21;0.0313)|READ - Rectum adenocarcinoma(32;0.105)|STAD - Stomach adenocarcinoma(97;0.184)	NADH(DB00157)	TTCTTACAGGGACAGCTGCAG	0.348													18	58					9.16793e-09	1.5961e-07	0.000566183	1	0
ALPK2	115701	broad.mit.edu	37	18	56203356	56203356	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr18:56203356C>T	uc002lhj.3	-	5	4277	c.4063G>A	c.(4063-4065)GAT>AAT	p.D1355N	ALPK2_uc002lhk.1_Missense_Mutation_p.D686N	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1355							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						GACAGTGAATCTGTGACAGAT	0.473													15	47					0	0	0.000422831	0	0
CDH20	28316	broad.mit.edu	37	18	59174790	59174790	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr18:59174790G>A	uc010dps.1	+	5	1026	c.1014G>A	c.(1012-1014)AAG>AAA	p.K338K	CDH20_uc002lif.2_Silent_p.K332K	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	338	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				TAACTGTGAAGAAGGTAATCC	0.368													7	40					0	0	0.000157383	0	0
OR4F17	81099	broad.mit.edu	37	19	110702	110702	+	Silent	SNP	G	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:110702G>T	uc002loc.1	+	1	24	c.24G>T	c.(22-24)CTG>CTT	p.L8L	OR4F17_uc002lob.1_Silent_p.L8L	NM_001005240	NP_001005240	Q8NGA8	O4F17_HUMAN	olfactory receptor, family 4, subfamily F,	8	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCATTTTTCTGGGTCTCTCTG	0.393													12	297					0.000566183	0.00953384	0.000566183	1	0
TMPRSS9	360200	broad.mit.edu	37	19	2396587	2396587	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:2396587G>A	uc010xgx.1	+	2	193	c.193G>A	c.(193-195)GGA>AGA	p.G65R	TMPRSS9_uc002lvv.1_Missense_Mutation_p.G65R	NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	65	Extracellular (Potential).				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGAGCTGCGGGGAATCCGGTG	0.667													6	9					0	0	0.000157383	0	0
MRPL54	116541	broad.mit.edu	37	19	3762778	3762778	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:3762778C>T	uc002lyq.3	+	1	114	c.80C>T	c.(79-81)TCC>TTC	p.S27F	APBA3_uc002lyp.1_5'Flank	NM_172251	NP_758455	Q6P161	RM54_HUMAN	mitochondrial ribosomal protein L54 precursor	27						mitochondrion|ribosome					0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00467)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCGCCACTTCCGGAAGACTC	0.622													16	50					0	0	0.000175454	0	0
ZBTB7A	51341	broad.mit.edu	37	19	4054985	4054985	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:4054985G>A	uc002lzh.2	-	2	321	c.246C>T	c.(244-246)GCC>GCT	p.A82A	ZBTB7A_uc002lzi.2_Silent_p.A82A	NM_015898	NP_056982	O95365	ZBT7A_HUMAN	zinc finger and BTB domain containing 7A	82	BTB.				cell differentiation|multicellular organismal development|transcription, DNA-dependent	nucleus	DNA binding|histone acetyltransferase binding|zinc ion binding			pancreas(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.014)|STAD - Stomach adenocarcinoma(1328;0.18)		TGAGCGCCTCGGCGCTGACGA	0.657													6	11					0	0	3.59834e-05	0	0
PNPLA6	10908	broad.mit.edu	37	19	7621391	7621391	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:7621391C>T	uc010xjq.1	+	27	3371	c.3176C>T	c.(3175-3177)TCC>TTC	p.S1059F	PNPLA6_uc002mgq.1_Missense_Mutation_p.S1011F|PNPLA6_uc010xjp.1_Missense_Mutation_p.S984F|PNPLA6_uc002mgr.1_Missense_Mutation_p.S1011F|PNPLA6_uc002mgs.2_Missense_Mutation_p.S1049F|PNPLA6_uc002mgt.1_RNA	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	1050	Patatin.|Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						CCAGTCACCTCCATGTTCACT	0.567													52	87					0	0	0.000147903	0	0
MUC16	94025	broad.mit.edu	37	19	9077726	9077726	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:9077726G>A	uc002mkp.2	-	3	9924	c.9720C>T	c.(9718-9720)ACC>ACT	p.T3240T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3241	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTCCACTGTGGTCTCCATGG	0.527													44	118					0	0	0.000147903	0	0
DNM2	1785	broad.mit.edu	37	19	10886406	10886407	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:10886406_10886407CG>AT	uc002mps.1	+	4	577_578	c.413_414CG>AT	c.(412-414)CCG>CAT	p.P138H	DNM2_uc010dxk.2_RNA|DNM2_uc002mpt.1_Missense_Mutation_p.P138H|DNM2_uc002mpv.1_Missense_Mutation_p.P138H|DNM2_uc002mpu.1_Missense_Mutation_p.P138H|DNM2_uc010dxl.1_Missense_Mutation_p.P138H	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	138	GTP (By similarity).				G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			ATCGACCTCCCGGGTATCACCA	0.584													9	268					0	0	6.4e-05	0	0
MAST1	22983	broad.mit.edu	37	19	12976153	12976153	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:12976153C>T	uc002mvm.2	+	15	1790	c.1662C>T	c.(1660-1662)ATC>ATT	p.I554I		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	554	Protein kinase.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						CAGAGTACATCGCGCCCGAGG	0.662													9	19					0	0	0.000442599	0	0
SLC1A6	6511	broad.mit.edu	37	19	15075164	15075164	+	Silent	SNP	A	G	G			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:15075164A>G	uc002naa.1	-	4	566	c.558T>C	c.(556-558)TTT>TTC	p.F186F	SLC1A6_uc010dzu.1_Silent_p.F186F|SLC1A6_uc010xod.1_Silent_p.F122F|SLC1A6_uc002nab.2_Silent_p.F186F|SLC1A6_uc002nac.2_Silent_p.F186F|SLC1A6_uc002nad.1_Silent_p.F186F	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	186	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	GGTTTGGTGGAAACATATTTC	0.463													69	189					0	0	0.000147903	0	0
ZNF99	7652	broad.mit.edu	37	19	22940058	22940058	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:22940058G>A	uc010xrh.1	-	6	2273	c.2273C>T	c.(2272-2274)TCC>TTC	p.S758F		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				AAGGGTTGAGGAATTGTTAAA	0.348													7	30					0	0	8.12818e-05	0	0
ZNF536	9745	broad.mit.edu	37	19	31025837	31025837	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:31025837G>A	uc002nsu.1	+	3	2392	c.2254G>A	c.(2254-2256)GAC>AAC	p.D752N	ZNF536_uc010edd.1_Missense_Mutation_p.D752N	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	752	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGCCATGAAGGACTGCCCGTA	0.587													12	69					0	0	6.40141e-05	0	0
LSM14A	26065	broad.mit.edu	37	19	34712640	34712640	+	Silent	SNP	T	C	C			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:34712640T>C	uc002nvb.3	+	9	1561	c.1365T>C	c.(1363-1365)TAT>TAC	p.Y455Y	LSM14A_uc002nva.3_Silent_p.Y455Y|LSM14A_uc010xru.1_Silent_p.Y414Y|LSM14A_uc002nvc.3_Silent_p.Y261Y	NM_001114093	NP_001107565	Q8ND56	LS14A_HUMAN	LSM14 homolog A isoform a	455					cytoplasmic mRNA processing body assembly|multicellular organismal development|regulation of translation	cytoplasmic mRNA processing body|intracellular membrane-bounded organelle|stress granule				skin(1)	1	Esophageal squamous(110;0.162)					ATTTTGAATATAGGGTAAGTG	0.453													9	40					0	0	0.000442599	0	0
RYR1	6261	broad.mit.edu	37	19	38958278	38958278	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:38958278C>T	uc002oit.2	+	25	3337	c.3207C>T	c.(3205-3207)GAC>GAT	p.D1069D	RYR1_uc002oiu.2_Silent_p.D1069D	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1069	6 X approximate repeats.|Cytoplasmic.|B30.2/SPRY 2.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTCGTTGTGACCGGGTGCGCA	0.557													29	73					0	0	0.000339439	0	0
PSG9	5678	broad.mit.edu	37	19	43763094	43763094	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:43763094C>T	uc002owd.3	-	4	1002	c.903G>A	c.(901-903)ACG>ACA	p.T301T	PSG9_uc002owe.3_Intron|PSG9_uc010xwm.1_Silent_p.T208T|PSG9_uc002owf.3_Intron|PSG9_uc002owg.2_Intron|PSG9_uc002owh.2_Intron	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	301	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TTTCATTTCTCGTGACACTGG	0.488													35	134					0	0	0.000374591	0	0
SLC1A5	6510	broad.mit.edu	37	19	47285682	47285682	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:47285682G>A	uc002pfs.2	-	4	1402	c.782C>T	c.(781-783)TCC>TTC	p.S261F	SLC1A5_uc010xyh.1_Missense_Mutation_p.S59F|SLC1A5_uc002pfq.2_Missense_Mutation_p.S85F|SLC1A5_uc002pfr.2_Missense_Mutation_p.S33F	NM_005628	NP_005619	Q15758	AAAT_HUMAN	solute carrier family 1 member 5 isoform 1	261					cellular nitrogen compound metabolic process	integral to plasma membrane|melanosome|membrane fraction	neutral amino acid transmembrane transporter activity|protein binding|receptor activity|sodium:dicarboxylate symporter activity				0		all_epithelial(76;0.00314)|Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000338)|all cancers(93;0.000882)|Epithelial(262;0.0211)|GBM - Glioblastoma multiforme(486;0.0341)	L-Asparagine(DB00174)|L-Glutamine(DB00130)	CTCATTGAAGGAGTTGAAGAA	0.597													17	48					0	0	0.000375601	0	0
TRPM4	54795	broad.mit.edu	37	19	49671814	49671814	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:49671814C>T	uc002pmw.2	+	6	689	c.617C>T	c.(616-618)TCG>TTG	p.S206L	TRPM4_uc010emu.2_Missense_Mutation_p.S206L|TRPM4_uc010yak.1_5'UTR|TRPM4_uc002pmx.2_Missense_Mutation_p.S32L|TRPM4_uc010emv.2_Missense_Mutation_p.S91L|TRPM4_uc010yal.1_5'UTR	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	206	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		CCCTAGGGCTCGTTCCCTGCG	0.413													16	34					0	0	0.000132079	0	0
POLD1	5424	broad.mit.edu	37	19	50912866	50912866	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:50912866C>T	uc002psb.3	+	17	2153	c.2097C>T	c.(2095-2097)TCC>TCT	p.S699S	POLD1_uc002psc.3_Silent_p.S699S|POLD1_uc010enx.2_RNA|POLD1_uc010eny.2_Silent_p.S725S	NM_002691	NP_002682	P28340	DPOD1_HUMAN	DNA-directed DNA polymerase delta 1	699					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|DNA synthesis involved in DNA repair|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|response to UV|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm|nucleotide-excision repair complex	3'-5'-exodeoxyribonuclease activity|chromatin binding|DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding|protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2		all_neural(266;0.0571)		OV - Ovarian serous cystadenocarcinoma(262;0.00794)|GBM - Glioblastoma multiforme(134;0.0195)		GCGCCAACTCCGTATACGGCT	0.687								DNA_polymerases_(catalytic_subunits)					29	76					0	0	0.000339439	0	0
NLRP5	126206	broad.mit.edu	37	19	56539572	56539572	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:56539572C>T	uc002qmj.2	+	7	1973	c.1973C>T	c.(1972-1974)CCC>CTC	p.P658L	NLRP5_uc002qmi.2_Missense_Mutation_p.P639L	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	658						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		TGTCCCGTTCCCCTGGGGGTG	0.587													19	49					0	0	0.000132079	0	0
ZSCAN18	65982	broad.mit.edu	37	19	58598336	58598336	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr19:58598336C>T	uc002qri.2	-	5	991	c.682G>A	c.(682-684)GAG>AAG	p.E228K	ZSCAN18_uc002qrj.3_Missense_Mutation_p.E228K|ZSCAN18_uc010yhs.1_Missense_Mutation_p.E93K|ZSCAN18_uc002qrh.2_Missense_Mutation_p.E228K|ZSCAN18_uc010yht.1_Missense_Mutation_p.E284K|ZSCAN18_uc002qrk.1_3'UTR|ZSCAN18_uc002qrl.2_3'UTR	NM_001145543	NP_001139015	Q8TBC5	ZSC18_HUMAN	zinc finger and SCAN domain containing 18	228					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.114)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		TGGCCCCACTCCCCCAGGTGC	0.642													11	33					0	0	3.86212e-05	0	0
KCNK3	3777	broad.mit.edu	37	2	26950541	26950541	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:26950541G>A	uc002rhn.2	+	2	453	c.290G>A	c.(289-291)GGG>GAG	p.G97E		NM_002246	NP_002237	O14649	KCNK3_HUMAN	potassium channel, subfamily K, member 3	97					synaptic transmission	integral to plasma membrane				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCAGGCTACGGGCACGCGGCA	0.627													39	168					0	0	0.000147903	0	0
LHCGR	3973	broad.mit.edu	37	2	48958405	48958405	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:48958405G>A	uc002rwu.3	-	2	264	c.194C>T	c.(193-195)CCA>CTA	p.P65L	GTF2A1L_uc002rwt.2_Intron|LHCGR_uc002rwv.2_RNA	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	65	LRRNT.|Extracellular (Potential).				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	AGCTTGAGATGGGATCACTTT	0.328									Familial_Male-Limited_Precocious_Puberty				29	93					0	0	0.000270559	0	0
ANTXR1	84168	broad.mit.edu	37	2	69472523	69472523	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:69472523C>T	uc002sfg.2	+	18	1957	c.1601C>T	c.(1600-1602)CCG>CTG	p.P534L		NM_032208	NP_115584	Q9H6X2	ANTR1_HUMAN	anthrax toxin receptor 1 isoform 1 precursor	534	Cytoplasmic (Potential).|Pro-rich.				actin cytoskeleton reorganization|substrate adhesion-dependent cell spreading	filopodium membrane|integral to membrane|lamellipodium membrane	actin filament binding|collagen binding|metal ion binding|protein binding|transmembrane receptor activity			ovary(2)|skin(2)	4						cctcccatcccgtccccacct	0.075									Familial_Infantile_Hemangioma				9	3					0	0	0.000274275	0	0
ATP6V1B1	525	broad.mit.edu	37	2	71191934	71191934	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:71191934C>T	uc002shj.2	+	13	1404	c.1317C>T	c.(1315-1317)ACC>ACT	p.T439T	ATP6V1B1_uc010fdv.2_Silent_p.T422T|ATP6V1B1_uc010fdw.2_RNA|ATP6V1B1_uc010fdx.2_Silent_p.T397T	NM_001692	NP_001683	P15313	VATB1_HUMAN	ATPase, H+ transporting, lysosomal 56/58kDa, V1	439					ATP hydrolysis coupled proton transport|calcium ion homeostasis|cellular iron ion homeostasis|excretion|inner ear morphogenesis|insulin receptor signaling pathway|ossification|pH reduction|sensory perception of sound|transferrin transport	apical plasma membrane|basolateral plasma membrane|cytosol|endomembrane system|lateral plasma membrane|microvillus|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			skin(1)	1						AGGCGCTCACCTCTGAGGACC	0.592											OREG0014686	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	40					0	0	6.40141e-05	0	0
DYSF	8291	broad.mit.edu	37	2	71730347	71730347	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:71730347C>T	uc002sie.2	+	4	616	c.240C>T	c.(238-240)TTC>TTT	p.F80F	DYSF_uc010feg.2_Silent_p.F80F|DYSF_uc010feh.2_Silent_p.F80F|DYSF_uc002sig.3_Silent_p.F80F|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.F80F|DYSF_uc010fef.2_Silent_p.F80F|DYSF_uc010fei.2_Silent_p.F80F|DYSF_uc010fek.2_Silent_p.F81F|DYSF_uc010fej.2_Silent_p.F81F|DYSF_uc010fel.2_Silent_p.F81F|DYSF_uc010feo.2_Silent_p.F81F|DYSF_uc010fem.2_Silent_p.F81F|DYSF_uc010fen.2_Silent_p.F81F|DYSF_uc002sif.2_Silent_p.F81F	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	80	Cytoplasmic (Potential).|C2 1.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CTCTCAGGTTCCTGGGGGAAG	0.592													22	91					0	0	0.000375601	0	0
CYP26B1	56603	broad.mit.edu	37	2	72362371	72362371	+	Missense_Mutation	SNP	G	A	A	rs142987158		TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:72362371G>A	uc002sih.1	-	3	607	c.607C>T	c.(607-609)CCT>TCT	p.P203S	CYP26B1_uc010yra.1_Missense_Mutation_p.P186S|CYP26B1_uc010yrb.1_Missense_Mutation_p.P128S	NM_019885	NP_063938	Q9NR63	CP26B_HUMAN	cytochrome P450, family 26, subfamily b,	203					cell fate determination|embryonic limb morphogenesis|male meiosis|negative regulation of retinoic acid receptor signaling pathway|proximal/distal pattern formation|retinoic acid catabolic process|spermatogenesis|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding	p.P203S(1)		skin(2)	2						TCCTCCTCAGGGATGCTGAAG	0.632													14	55					0	0	0.000308642	0	0
ARID5A	10865	broad.mit.edu	37	2	97217379	97217379	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:97217379T>A	uc002swe.2	+	7	1214	c.1114T>A	c.(1114-1116)TTG>ATG	p.L372M	ARID5A_uc010yuq.1_Missense_Mutation_p.L320M|ARID5A_uc002swf.2_Missense_Mutation_p.L208M|ARID5A_uc002swg.2_Missense_Mutation_p.L320M	NM_212481	NP_997646	Q03989	ARI5A_HUMAN	AT rich interactive domain 5A	372					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding				0						TGGGGTGCTATTGGGGCCTCC	0.592													5	9					0	0	3.59834e-05	0	0
ARID5A	10865	broad.mit.edu	37	2	97217381	97217381	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:97217381G>C	uc002swe.2	+	7	1216	c.1116G>C	c.(1114-1116)TTG>TTC	p.L372F	ARID5A_uc010yuq.1_Missense_Mutation_p.L320F|ARID5A_uc002swf.2_Missense_Mutation_p.L208F|ARID5A_uc002swg.2_Missense_Mutation_p.L320F	NM_212481	NP_997646	Q03989	ARI5A_HUMAN	AT rich interactive domain 5A	372					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding				0						GGGTGCTATTGGGGCCTCCTG	0.587													5	8					0	0	3.59834e-05	0	0
GPR39	2863	broad.mit.edu	37	2	133175423	133175423	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:133175423G>A	uc002ttl.2	+	1	1277	c.808G>A	c.(808-810)GAG>AAG	p.E270K		NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	270	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						GAGGAAGTCCGAGAGCGAAGA	0.617													17	57					0	0	0.000132079	0	0
GALNT13	114805	broad.mit.edu	37	2	155157940	155157940	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:155157940T>A	uc002tyr.3	+	9	1561	c.994T>A	c.(994-996)TCC>ACC	p.S332T	GALNT13_uc002tyt.3_Missense_Mutation_p.S332T|GALNT13_uc010foc.1_Missense_Mutation_p.S151T|GALNT13_uc010fod.2_Missense_Mutation_p.S85T	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	332	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						ATGTGGAGGCTCCTTGGAGAT	0.408													41	173					0	0	0.000147903	0	0
GPD2	2820	broad.mit.edu	37	2	157427695	157427695	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:157427695C>T	uc002tzf.3	+	13	2018	c.1658C>T	c.(1657-1659)TCA>TTA	p.S553L	GPD2_uc010zch.1_Missense_Mutation_p.S326L|GPD2_uc002tzd.3_Missense_Mutation_p.S553L|GPD2_uc002tze.1_RNA	NM_001083112	NP_001076581	P43304	GPDM_HUMAN	glycerol-3-phosphate dehydrogenase 2,	553					cellular lipid metabolic process	glycerol-3-phosphate dehydrogenase complex|mitochondrial inner membrane	calcium ion binding|sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity			ovary(1)	1						GATATGATTTCACGTCGTACT	0.418													32	86					0	0	0.00058488	0	0
SCN3A	6328	broad.mit.edu	37	2	165946963	165946963	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:165946963C>T	uc002ucx.2	-	28	6192	c.5700G>A	c.(5698-5700)GAG>GAA	p.E1900E	SCN3A_uc010zcy.1_Silent_p.E383E|SCN3A_uc002ucy.2_Silent_p.E1851E|SCN3A_uc002ucz.2_Silent_p.E1851E	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1900	IQ.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	CAGACACCTCCTCTTGTTTAC	0.373													20	55					0	0	0.000117367	0	0
SCN2A	6326	broad.mit.edu	37	2	166221774	166221774	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:166221774G>A	uc002udc.2	+	18	3810	c.3520_splice	c.e18+1	p.D1174_splice	SCN2A_uc002udd.2_Splice_Site_p.D1174_splice|SCN2A_uc002ude.2_Splice_Site_p.D1174_splice	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha						myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TTTACAGAAGGTAAGCAAAAC	0.358													17	44					0	0	0.000175454	0	0
XIRP2	129446	broad.mit.edu	37	2	168105217	168105217	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:168105217G>A	uc002udx.2	+	8	7333	c.7315G>A	c.(7315-7317)GAT>AAT	p.D2439N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.D2264N|XIRP2_uc010fpq.2_Missense_Mutation_p.D2217N|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2264					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TAATAAGAACGATTTTTCCCC	0.408													44	128					0	0	0.000147903	0	0
ZAK	51776	broad.mit.edu	37	2	174131075	174131075	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:174131075C>T	uc002uhz.2	+	20	2200	c.2000C>T	c.(1999-2001)TCT>TTT	p.S667F	uc002uib.2_Intron	NM_016653	NP_057737	Q9NYL2	MLTK_HUMAN	MLK-related kinase isoform 1	667					activation of JUN kinase activity|activation of MAPKK activity|cell cycle arrest|cell death|cell differentiation|cell proliferation|DNA damage checkpoint|positive regulation of apoptosis|response to radiation	cytoplasm|nucleus	ATP binding|identical protein binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			lung(3)|stomach(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.176)			ACTGACACCTCTTCAGAGAGG	0.453													26	63					0	0	0.000117367	0	0
TTN	7273	broad.mit.edu	37	2	179453985	179453985	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:179453985G>T	uc010zfg.1	-	253	54987	c.54763C>A	c.(54763-54765)CGT>AGT	p.R18255S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R11950S|TTN_uc010zfi.1_Missense_Mutation_p.R11883S|TTN_uc010zfj.1_Missense_Mutation_p.R11758S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19182							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAATCAGCACGGGTATCAATC	0.453													8	119					1.12685e-05	0.000193988	0.000274275	1	0
TTN	7273	broad.mit.edu	37	2	179456088	179456089	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:179456088_179456089CG>AT	uc010zfg.1	-	253	52883_52884	c.52659_52660CG>AT	c.(52657-52662)ACCGAT>ACATAT	p.D17554Y	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D11249Y|TTN_uc010zfi.1_Missense_Mutation_p.D11182Y|TTN_uc010zfj.1_Missense_Mutation_p.D11057Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18481							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAGTGCTCATCGGTTTTAATCT	0.431													8	369					0	0	6.4e-05	0	0
TTN	7273	broad.mit.edu	37	2	179581852	179581852	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:179581852C>T	uc010zfg.1	-	85	22101	c.21877G>A	c.(21877-21879)GAC>AAC	p.D7293N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D3954N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8220							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAACAAGAGTCTTTTCCAGCG	0.448													13	33					0	0	0.000219431	0	0
TTN	7273	broad.mit.edu	37	2	179613640	179613640	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:179613640G>A	uc002unb.2	-	46	13711	c.13487C>T	c.(13486-13488)TCA>TTA	p.S4496L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGCTTTAATGAAAAGGCTTT	0.318													18	71					0	0	7.07596e-05	0	0
TTN	7273	broad.mit.edu	37	2	179617872	179617872	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:179617872C>T	uc010zfg.1	-	45	10563	c.10339G>A	c.(10339-10341)GAG>AAG	p.E3447K	TTN_uc010zfh.1_Missense_Mutation_p.E3593K|TTN_uc010zfi.1_Missense_Mutation_p.E3526K|TTN_uc010zfj.1_Missense_Mutation_p.E3401K|TTN_uc002umz.1_Missense_Mutation_p.E108K|TTN_uc002unb.2_Missense_Mutation_p.E3447K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCTCAATCTCTTGTTCAATC	0.294													6	34					0	0	0.000274275	0	0
CCDC141	285025	broad.mit.edu	37	2	179702043	179702043	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:179702043G>A	uc002unf.1	-	13	2235	c.2178C>T	c.(2176-2178)ACC>ACT	p.T726T	CCDC141_uc002une.1_Silent_p.T176T	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	726							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			ATCCTCTGGAGGTTAGTGGGG	0.468													18	66					0	0	0.000229342	0	0
CCDC141	285025	broad.mit.edu	37	2	179732794	179732794	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:179732794G>A	uc002unf.1	-	6	865	c.808C>T	c.(808-810)CTT>TTT	p.L270F		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	270							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			CCTAAGGAAAGGGCCAGTCTG	0.517													8	36					0	0	3.86212e-05	0	0
ITGA4	3676	broad.mit.edu	37	2	182360646	182360646	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:182360646G>A	uc002unu.2	+	14	2285	c.1522G>A	c.(1522-1524)GAA>AAA	p.E508K	ITGA4_uc010frj.1_5'Flank	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	508	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	TAAGGGCAAGGAAGTTCCAGG	0.443													17	64					0	0	0.000229342	0	0
FAM171B	165215	broad.mit.edu	37	2	187627263	187627263	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:187627263C>T	uc002ups.2	+	8	2306	c.2194C>T	c.(2194-2196)CAG>TAG	p.Q732*	FAM171B_uc002upr.1_Nonsense_Mutation_p.Q699*|FAM171B_uc002upt.2_Nonsense_Mutation_p.Q201*	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	732	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						AAGCATGCATCAGCCCAAGAT	0.483													32	78					0	0	0.000132358	0	0
Unknown	0	broad.mit.edu	37	2	190788333	190788333	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:190788333A>G	uc002uro.2	+	1	415	c.272A>G	c.(271-273)AAC>AGC	p.N91S						SubName: Full=cDNA FLJ54127, highly similar to Heterogeneous nuclear ribonucleoproteins C;																		CCAAAAGTGAACCGAGGAAAA	0.478													11	56					0	0	0.000151284	0	0
NBEAL1	65065	broad.mit.edu	37	2	204045122	204045122	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:204045122G>T	uc002uzt.3	+	42	6728	c.6395G>T	c.(6394-6396)CGA>CTA	p.R2132L	NBEAL1_uc002uzs.3_Missense_Mutation_p.R842L	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2132	BEACH.						binding			ovary(1)|skin(1)	2						TGTGCAGATCGACAGTTCCAT	0.343													8	483					3.86212e-05	0.000661173	3.86212e-05	1	0
PARD3B	117583	broad.mit.edu	37	2	205986545	205986545	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:205986545C>T	uc002var.1	+	8	1244	c.1037C>T	c.(1036-1038)TCC>TTC	p.S346F	PARD3B_uc010fub.1_Missense_Mutation_p.S346F|PARD3B_uc002vao.1_Missense_Mutation_p.S346F|PARD3B_uc002vap.1_Missense_Mutation_p.S346F|PARD3B_uc002vaq.1_Missense_Mutation_p.S346F	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	346					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		GCATCAGCTTCCCTGCAACAA	0.488													11	38					0	0	3.86212e-05	0	0
ZDBF2	57683	broad.mit.edu	37	2	207170180	207170181	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:207170180_207170181CC>TT	uc002vbp.2	+	5	1178_1179	c.928_929CC>TT	c.(928-930)CCG>TTG	p.P310L		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	310							nucleic acid binding|zinc ion binding			ovary(3)	3						AGCAGTAAACCCGAATAAAACT	0.371													8	43					0	0	6.4e-05	0	0
IKZF2	22807	broad.mit.edu	37	2	213914548	213914548	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:213914548G>A	uc002vem.2	-	5	632	c.463C>T	c.(463-465)CTT>TTT	p.L155F	IKZF2_uc010fuu.2_Intron|IKZF2_uc002vej.2_Missense_Mutation_p.L102F|IKZF2_uc002vek.2_RNA|IKZF2_uc010fuv.2_Missense_Mutation_p.L129F|IKZF2_uc002vel.2_Missense_Mutation_p.L76F|IKZF2_uc010fuw.2_5'UTR|IKZF2_uc010fux.2_5'UTR|IKZF2_uc010fuy.2_Missense_Mutation_p.L129F|IKZF2_uc002ven.2_Missense_Mutation_p.L129F	NM_016260	NP_057344	Q9UKS7	IKZF2_HUMAN	helios isoform 1	155	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Esophageal squamous(248;0.0559)|Renal(323;0.218)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;2.97e-07)|all cancers(144;1.53e-05)|LUSC - Lung squamous cell carcinoma(224;0.00599)|Lung(261;0.00792)		TGTCTCAGAAGGTTGCCCTTC	0.488													4	26					0	0	0.00024832	0	0
VIL1	7429	broad.mit.edu	37	2	219289022	219289022	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:219289022C>T	uc002via.2	+	3	163	c.98C>T	c.(97-99)CCT>CTT	p.P33L	VIL1_uc010zke.1_Intron|VIL1_uc002vib.2_Missense_Mutation_p.P33L|VIL1_uc002vic.1_Missense_Mutation_p.P33L	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	33	Gelsolin-like 1.|Core.|Necessary for homodimerization.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GTGCCTGTTCCTTCCAGCACC	0.612													34	90					0	0	0.000437636	0	0
CYP27A1	1593	broad.mit.edu	37	2	219679735	219679735	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:219679735C>T	uc002viz.3	+	9	2012	c.1578C>T	c.(1576-1578)TTC>TTT	p.F526F		NM_000784	NP_000775	Q02318	CP27A_HUMAN	cytochrome P450, family 27, subfamily A,	526					bile acid biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	cholestanetriol 26-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;9.48e-07)|all cancers(144;0.000171)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00981)	Cholecalciferol(DB00169)	GCCTGCAGTTCCTGCAGAGAC	0.587													15	26					0	0	0.000308642	0	0
SPEG	10290	broad.mit.edu	37	2	220337666	220337666	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:220337666G>A	uc010fwg.2	+	16	3995	c.3995G>A	c.(3994-3996)TGG>TAG	p.W1332*		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1332	Fibronectin type-III 1.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		TCGGACCAGTGGACGGCACTG	0.647													17	13					0	0	7.07596e-05	0	0
SP140L	93349	broad.mit.edu	37	2	231223698	231223698	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr2:231223698G>A	uc010fxm.1	+	4	381	c.290G>A	c.(289-291)AGA>AAA	p.R97K	SP140_uc010zma.1_RNA|SP140L_uc010fxn.1_Missense_Mutation_p.R10K	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	97	HSR.					nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						GATTCTTGTAGAAACCTGGTC	0.363													31	94					0	0	0.000132358	0	0
DEFB127	140850	broad.mit.edu	37	20	139486	139486	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr20:139486G>A	uc002wcy.1	+	2	121	c.121G>A	c.(121-123)GAA>AAA	p.E41K		NM_139074	NP_620713	Q9H1M4	DB127_HUMAN	defensin, beta 127 preproprotein	41					defense response to bacterium|innate immune response	extracellular region					0		all_cancers(10;7.65e-05)|Lung NSC(37;0.0417)|all_epithelial(17;0.0676)|all_lung(30;0.0713)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.122)			CAGAGTAAATGAAGTGCCTGA	0.398													5	26					0	0	3.59834e-05	0	0
JAG1	182	broad.mit.edu	37	20	10629243	10629243	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr20:10629243C>T	uc002wnw.2	-	12	2039	c.1523G>A	c.(1522-1524)AGA>AAA	p.R508K	JAG1_uc010gcd.1_Missense_Mutation_p.R66K	NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	508	EGF-like 8; calcium-binding (Potential).|Extracellular (Potential).				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						ACACTGGAATCTGTTGATTTC	0.512									Alagille_Syndrome				12	31					0	0	0.000151284	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20493762	20493762	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr20:20493762G>A	uc002wrz.2	-	32	4394	c.4251C>T	c.(4249-4251)TCC>TCT	p.S1417S	RALGAPA2_uc010gcx.2_Silent_p.S1121S|RALGAPA2_uc010zsg.1_Silent_p.S865S|RALGAPA2_uc002wsa.1_Silent_p.S189S	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	1417					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						ACACCTCAAAGGACAGCTCGG	0.552													4	22					0	0	3.59834e-05	0	0
CHD6	84181	broad.mit.edu	37	20	40034065	40034065	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr20:40034065G>A	uc002xka.1	-	37	7494	c.7316C>T	c.(7315-7317)CCC>CTC	p.P2439L	CHD6_uc002xjz.1_5'UTR	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2439					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				CCTCCTGCGGGGGCCCGTATC	0.532													13	30					0	0	0.000151284	0	0
SLC12A5	57468	broad.mit.edu	37	20	44674583	44674583	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr20:44674583G>A	uc010zxl.1	+	13	1781	c.1705G>A	c.(1705-1707)GAG>AAG	p.E569K	SLC12A5_uc010zxm.1_RNA|SLC12A5_uc002xrb.2_Missense_Mutation_p.E546K	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	569					potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	CTGCATCTGCGAGATTGGCAT	0.592													34	114					0	0	0.000228196	0	0
ELMO2	63916	broad.mit.edu	37	20	45017738	45017738	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr20:45017738T>C	uc002xrt.1	-	7	575	c.365A>G	c.(364-366)AAC>AGC	p.N122S	ELMO2_uc002xru.1_Missense_Mutation_p.N122S|ELMO2_uc010zxr.1_Missense_Mutation_p.N122S|ELMO2_uc010zxs.1_5'UTR|ELMO2_uc002xrw.2_5'Flank|ELMO2_uc002xrx.1_Missense_Mutation_p.N122S	NM_133171	NP_573403	Q96JJ3	ELMO2_HUMAN	engulfment and cell motility 2	122					apoptosis|cell chemotaxis|phagocytosis	cytoskeleton|cytosol|membrane	lyase activity|receptor tyrosine kinase binding|SH3 domain binding			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GCCATCCATGTTGATGAACTC	0.527													13	35					0	0	0.00010058	0	0
RNF114	55905	broad.mit.edu	37	20	48561960	48561960	+	Silent	SNP	C	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr20:48561960C>A	uc002xux.2	+	3	369	c.333C>A	c.(331-333)TCC>TCA	p.S111S	RNF114_uc010zyo.1_Silent_p.S111S|RNF114_uc002xuy.2_RNA	NM_018683	NP_061153	Q9Y508	RN114_HUMAN	zinc finger protein 313	111					cell differentiation|multicellular organismal development|spermatogenesis	intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)	2						CTACTTGTTCCAAATACCAGA	0.458													22	47					1.77063e-15	3.12676e-14	0.000117367	1	0
ZFP64	55734	broad.mit.edu	37	20	50701658	50701658	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr20:50701658G>A	uc002xwk.2	-	9	1725	c.1376C>T	c.(1375-1377)TCG>TTG	p.S459L	ZFP64_uc002xwj.2_Missense_Mutation_p.S240L	NM_199427	NP_955459	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform d	442	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						GCGGATGTGCGATTTGAGATT	0.597													22	51					0	0	0.000375601	0	0
CASS4	57091	broad.mit.edu	37	20	55027409	55027409	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr20:55027409C>T	uc002xxp.2	+	6	1402	c.1177C>T	c.(1177-1179)CCT>TCT	p.P393S	CASS4_uc002xxq.3_Missense_Mutation_p.P393S|CASS4_uc002xxr.2_Missense_Mutation_p.P393S|CASS4_uc010zze.1_Missense_Mutation_p.P339S|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	393	Ser-rich.				cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						TTCCCCATCTCCTGAACCGGA	0.547													10	31					0	0	6.40141e-05	0	0
ZNF831	128611	broad.mit.edu	37	20	57766946	57766946	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr20:57766946C>T	uc002yan.2	+	1	872	c.872C>T	c.(871-873)CCA>CTA	p.P291L		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	291						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CCTGGGCTCCCAGCGGCCAGC	0.677													14	56					0	0	0.000308642	0	0
BAGE2	85319	broad.mit.edu	37	21	11058322	11058322	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr21:11058322C>T	uc002yit.1	-	3	326	c.118G>A	c.(118-120)GAT>AAT	p.D40N	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AAATGCACATCGCTGAAAGGG	0.383													15	163					0	0	0.000422831	0	0
TRAPPC10	7109	broad.mit.edu	37	21	45523370	45523370	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr21:45523370C>T	uc002zea.2	+	23	3907	c.3738C>T	c.(3736-3738)ATC>ATT	p.I1246I	TRAPPC10_uc010gpo.2_Silent_p.I957I|TRAPPC10_uc011afa.1_Silent_p.I624I	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	1246					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						TCCTGGTCATCCCCAGCCAAG	0.607													5	15					0	0	8.12818e-05	0	0
ARVCF	421	broad.mit.edu	37	22	19969131	19969131	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr22:19969131A>G	uc002zqz.2	-	5	770	c.499T>C	c.(499-501)TTC>CTC	p.F167L	ARVCF_uc002zqy.2_5'Flank|ARVCF_uc002zra.2_Missense_Mutation_p.F167L	NM_001670	NP_001661	O00192	ARVC_HUMAN	armadillo repeat protein	167					cell adhesion|multicellular organismal development		protein binding			liver(1)	1	Colorectal(54;0.0993)					CGCAGCAGGAAATGCCGGTCC	0.687													11	37					0	0	0.00010058	0	0
C22orf25	128989	broad.mit.edu	37	22	20024356	20024356	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr22:20024356C>T	uc010grw.1	+	3	372	c.35C>T	c.(34-36)CCT>CTT	p.P12L	C22orf25_uc002zrb.1_Missense_Mutation_p.P12L|C22orf25_uc002zrc.1_Missense_Mutation_p.P12L|C22orf25_uc002zrd.1_5'UTR|C22orf25_uc002zre.2_Missense_Mutation_p.P12L|C22orf25_uc010grx.2_5'UTR|C22orf25_uc011ahe.1_RNA|C22orf25_uc011ahf.1_Missense_Mutation_p.P12L|C22orf25_uc011ahg.1_5'UTR|C22orf25_uc002zrg.2_5'UTR|C22orf25_uc011ahh.1_Missense_Mutation_p.P12L|C22orf25_uc002zrf.2_Missense_Mutation_p.P12L|C22orf25_uc011ahi.1_5'UTR|C22orf25_uc010gry.1_RNA|C22orf25_uc002zrh.1_5'UTR	NM_152906	NP_690870	Q6ICL3	CV025_HUMAN	hypothetical protein LOC128989	12											0	Colorectal(54;0.0533)					GATCCTCGCCCTGTTTCCAAA	0.577													26	65					0	0	0.000279167	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659734	24659734	+	RNA	SNP	T	C	C			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr22:24659734T>C	uc002zzs.3	+	7		c.3466T>C			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						CTCTCTCCTGTGGGAGGGGGG	0.632													3	11					0	0	0.00024832	0	0
MYO18B	84700	broad.mit.edu	37	22	26423117	26423117	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr22:26423117G>A	uc003abz.1	+	43	7427	c.7177G>A	c.(7177-7179)GAT>AAT	p.D2393N	MYO18B_uc003aca.1_Missense_Mutation_p.D2274N|MYO18B_uc010guy.1_Missense_Mutation_p.D2275N|MYO18B_uc010guz.1_Missense_Mutation_p.D2273N|MYO18B_uc011aka.1_Missense_Mutation_p.D1547N|MYO18B_uc011akb.1_Missense_Mutation_p.D1906N|MYO18B_uc010gva.1_Missense_Mutation_p.D376N|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2393						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CTCTGTGGACGATGCGGGCTG	0.597													11	32					0	0	3.86212e-05	0	0
LIF	3976	broad.mit.edu	37	22	30639731	30639731	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr22:30639731G>A	uc003agz.2	-	3	630	c.518C>T	c.(517-519)TCG>TTG	p.S173L	LIF_uc011aks.1_3'UTR|uc003aha.2_5'Flank	NM_002309	NP_002300	P15018	LIF_HUMAN	leukemia inhibitory factor (cholinergic	173					immune response|leukemia inhibitory factor signaling pathway|negative regulation of hormone secretion|positive regulation of cell proliferation|positive regulation of macrophage differentiation|positive regulation of MAPKKK cascade|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of peptidyl-serine phosphorylation of STAT protein|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of metanephric nephron tubule epithelial cell differentiation		cytokine activity|growth factor activity|leukemia inhibitory factor receptor binding				0			Epithelial(10;0.171)			ATCCTTACCCGAGGTGTCAGG	0.597													12	56					0	0	0.000151284	0	0
C22orf42	150297	broad.mit.edu	37	22	32554993	32554993	+	Silent	SNP	C	T	T	rs138905164	byFrequency	TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr22:32554993C>T	uc003amd.2	-	1	251	c.210G>A	c.(208-210)CCG>CCA	p.P70P		NM_001010859	NP_001010859	Q6IC83	CV042_HUMAN	chromosome 22 open reading frame 42	70										ovary(1)|skin(1)	2						TCAGCATCTTCGGCGTCTTCG	0.557													54	158					0	0	0.000147903	0	0
APOBEC3F	200316	broad.mit.edu	37	22	39448129	39448129	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr22:39448129C>T	uc003aww.2	+	6	1067	c.774C>T	c.(772-774)TTC>TTT	p.F258F		NM_145298	NP_660341	Q9HC16	ABC3G_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					base conversion or substitution editing|DNA cytosine deamination|innate immune response|interspecies interaction between organisms|negative regulation of retroviral genome replication|negative regulation of transposition|positive regulation of defense response to virus by host|response to virus|viral reproduction	apolipoprotein B mRNA editing enzyme complex|cytosol|mitochondrion	cytidine deaminase activity|dCTP deaminase activity|protein homodimerization activity|RNA binding|zinc ion binding				0	Melanoma(58;0.04)					TCTCTTGGTTCTGTGACGACA	0.572													41	102					0	0	0.000147903	0	0
PKDREJ	10343	broad.mit.edu	37	22	46658038	46658038	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr22:46658038C>T	uc003bhh.2	-	1	1182	c.1182G>A	c.(1180-1182)GGG>GGA	p.G394G		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	394	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		CTTCCTTGCTCCCCAGGATTA	0.562													21	70					0	0	0.00047179	0	0
EDEM1	9695	broad.mit.edu	37	3	5251859	5251859	+	Splice_Site	SNP	G	C	C			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr3:5251859G>C	uc003bqi.2	+	9	1642	c.1510_splice	c.e9-1	p.A504_splice	EDEM1_uc003bqh.2_Splice_Site_p.A504_splice	NM_014674	NP_055489	Q92611	EDEM1_HUMAN	ER degradation enhancer, mannosidase alpha-like						ER-associated protein catabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	integral to endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			ovary(2)|breast(1)	3				Epithelial(13;0.0588)|OV - Ovarian serous cystadenocarcinoma(96;0.0682)		GTTCTCTCTAGGCAACCAAGA	0.473													3	64					0	0	0.00024832	0	0
SRGAP3	9901	broad.mit.edu	37	3	9034648	9034648	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr3:9034648C>T	uc003brf.1	-	20	3176	c.2500G>A	c.(2500-2502)GAC>AAC	p.D834N	SRGAP3_uc003brg.1_Missense_Mutation_p.D810N	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	834					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		GACTGGAGGTCGTTTTTGGAA	0.582			T	RAF1	pilocytic astrocytoma								10	32					0	0	3.86212e-05	0	0
CCR2	729230	broad.mit.edu	37	3	46399601	46399601	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr3:46399601C>T	uc003cpn.3	+	2	1068	c.583C>T	c.(583-585)CCA>TCA	p.P195S	CCR2_uc003cpm.3_Missense_Mutation_p.P195S	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	195	Extracellular (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		CCCTTATTTTCCACGAGGATG	0.453													99	294					0	0	0.000147903	0	0
COL7A1	1294	broad.mit.edu	37	3	48613092	48613092	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr3:48613092C>T	uc003ctz.2	-	72	5947	c.5946G>A	c.(5944-5946)GGG>GGA	p.G1982G		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1982	Triple-helical region.		G -> W (in HS-DEB).		cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CGCCTGAGTCCCCCTTGGGGC	0.647													5	37					0	0	3.59834e-05	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64601033	64601033	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr3:64601033G>A	uc003dmg.2	-	21	3185	c.3153C>T	c.(3151-3153)TTC>TTT	p.F1051F	ADAMTS9_uc011bfo.1_Silent_p.F1023F|ADAMTS9_uc003dmh.1_Silent_p.F880F|ADAMTS9_uc003dmk.1_Silent_p.F1051F|ADAMTS9_uc011bfp.1_5'UTR	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1051					glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		GTGGACAAGGGAACTCACTGC	0.458													109	327					0	0	0.000147903	0	0
POU1F1	5449	broad.mit.edu	37	3	87322529	87322529	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr3:87322529C>T	uc003dqq.1	-	2	307	c.182G>A	c.(181-183)GGA>GAA	p.G61E	POU1F1_uc010hoj.1_Missense_Mutation_p.G87E	NM_000306	NP_000297	P28069	PIT1_HUMAN	pituitary specific transcription factor 1	61					negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|skin(1)	2	all_cancers(8;0.104)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00229)|Lung(72;0.00677)		TGGCTGGTTTCCATAATGACA	0.408													10	40					0	0	0.00010058	0	0
CBLB	868	broad.mit.edu	37	3	105421148	105421149	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr3:105421148_105421149GG>AA	uc003dwc.2	-	12	2070_2071	c.1748_1749CC>TT	c.(1747-1749)TCC>TTT	p.S583F	CBLB_uc011bhi.1_Missense_Mutation_p.S605F|CBLB_uc003dwd.1_Missense_Mutation_p.S583F|CBLB_uc003dwe.1_Missense_Mutation_p.S583F	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	583	Pro-rich.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						GCGGGTCTCTGGAAGGCACGCT	0.545			Mis S		AML								9	39					0	0	6.4e-05	0	0
KIAA1524	57650	broad.mit.edu	37	3	108281983	108281983	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr3:108281983G>A	uc003dxb.3	-	13	1893	c.1624C>T	c.(1624-1626)CCT>TCT	p.P542S	KIAA1524_uc010hpv.1_Missense_Mutation_p.P109S	NM_020890	NP_065941	Q8TCG1	CIP2A_HUMAN	p90 autoantigen	542						cytoplasm|integral to membrane	protein binding			ovary(2)|central_nervous_system(1)	3						ACTAAAGCAGGAAAATCTGGC	0.393													36	97					0	0	0.000132358	0	0
CD200R1	131450	broad.mit.edu	37	3	112647750	112647750	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr3:112647750G>A	uc003dzk.1	-	4	846	c.613C>T	c.(613-615)CAC>TAC	p.H205Y	CD200R1_uc003dzj.1_Missense_Mutation_p.H228Y|CD200R1_uc011bhx.1_Missense_Mutation_p.H183Y	NM_170780	NP_740750	Q8TD46	MO2R1_HUMAN	CD200 receptor 1 isoform d	205	Ig-like C2-type.|Extracellular (Potential).				interspecies interaction between organisms|regulation of immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(2)|pancreas(1)	3						ACCTCCCAGTGGCATGTACTC	0.507													7	33					0	0	0.000157383	0	0
Unknown	0	broad.mit.edu	37	3	126916050	126916050	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr3:126916050C>T	uc003eji.1	+	2	762	c.522C>T	c.(520-522)TCC>TCT	p.S174S						RecName: Full=Putative uncharacterized protein C3orf56;																		AGGGGCCATCCAGAGGAGCTC	0.637													6	24					0	0	8.12818e-05	0	0
TXNDC6	347736	broad.mit.edu	37	3	138023744	138023744	+	Silent	SNP	G	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr3:138023744G>T	uc003esg.2	-	9	790	c.762C>A	c.(760-762)CCC>CCA	p.P254P	TXNDC6_uc003esd.1_Intron|TXNDC6_uc010huf.1_Silent_p.P169P|TXNDC6_uc003ese.1_Silent_p.P193P	NM_178130	NP_835231	Q86XW9	TXND6_HUMAN	thioredoxin domain containing 6	254	NDK.				cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	cytoplasm|cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			breast(3)|ovary(1)|pancreas(1)	5						TGGCCACATTGGGGTCACGGG	0.587													11	296					0.000151284	0.0025756	0.000151284	1	0
PIK3CB	5291	broad.mit.edu	37	3	138426102	138426103	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr3:138426102_138426103CC>AA	uc011bmq.1	-	9	1428_1429	c.1428_1429GG>TT	c.(1426-1431)ATGGGA>ATTTGA	p.476_477MG>I*	PIK3CB_uc011bmn.1_Nonsense_Mutation_p.5_6MG>I*|PIK3CB_uc011bmo.1_Intron|PIK3CB_uc011bmp.1_Nonsense_Mutation_p.80_81MG>I*	NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	476_477					activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TGAACAGTTCCCATTGGATTCA	0.302													13	567					0	0	6.4e-05	0	0
AGTR1	185	broad.mit.edu	37	3	148459531	148459531	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr3:148459531G>A	uc003ewg.2	+	4	1155	c.709G>A	c.(709-711)GAT>AAT	p.D237N	AGTR1_uc003ewh.2_Missense_Mutation_p.D237N|AGTR1_uc003ewi.2_Missense_Mutation_p.D237N|AGTR1_uc003ewj.2_Missense_Mutation_p.D237N|AGTR1_uc003ewk.2_Missense_Mutation_p.D237N	NM_031850	NP_114038	P30556	AGTR1_HUMAN	angiotensin II receptor, type 1	237	Cytoplasmic (Potential).				calcium-mediated signaling|cell chemotaxis|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|kidney development|low-density lipoprotein particle remodeling|positive regulation of cellular protein metabolic process|positive regulation of cholesterol esterification|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of phospholipase A2 activity|positive regulation of reactive oxygen species metabolic process|regulation of cell growth|regulation of cell proliferation|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|Rho protein signal transduction		acetyltransferase activator activity|angiotensin type I receptor activity|angiotensin type II receptor activity|bradykinin receptor binding|protein heterodimerization activity				0			LUSC - Lung squamous cell carcinoma(72;0.127)|Lung(72;0.152)		Candesartan(DB00796)|Eprosartan(DB00876)|Forasartan(DB01342)|Irbesartan(DB01029)|Losartan(DB00678)|Olmesartan(DB00275)|Saprisartan(DB01347)|Spironolactone(DB00421)|Tasosartan(DB01349)|Telmisartan(DB00966)|Valsartan(DB00177)	AAGAAATGATGATATTTTTAA	0.323													15	55					0	0	9.7654e-05	0	0
RSRC1	51319	broad.mit.edu	37	3	157841716	157841716	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr3:157841716C>T	uc003fbt.2	+	3	367	c.256C>T	c.(256-258)CGT>TGT	p.R86C	RSRC1_uc011bou.1_Missense_Mutation_p.R86C|RSRC1_uc003fbu.1_Missense_Mutation_p.R86C|RSRC1_uc003fbv.2_Missense_Mutation_p.R86C	NM_016625	NP_057709	Q96IZ7	RSRC1_HUMAN	arginine/serine-rich coiled-coil 1	86	Arg/Ser-rich.				nucleocytoplasmic transport	cytoplasm|nuclear speck	protein binding				0			Lung(72;0.00416)|LUSC - Lung squamous cell carcinoma(72;0.00575)			AAGTCGAAGTCGTTCAAGGGG	0.363													25	84					0	0	0.000227799	0	0
RTP4	64108	broad.mit.edu	37	3	187089057	187089057	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr3:187089057G>T	uc003frm.2	+	2	699	c.637G>T	c.(637-639)GGG>TGG	p.G213W		NM_022147	NP_071430	Q96DX8	RTP4_HUMAN	28kD interferon responsive protein	213	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste|protein targeting to membrane	cytoplasm|integral to membrane	protein binding				0	all_cancers(143;4.66e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.56e-18)	GBM - Glioblastoma multiforme(93;0.0269)		TAAGGGGAGTGGGTATGAGAA	0.463													7	22					5.18039e-06	8.96819e-05	0.000157383	1	0
NSUN7	79730	broad.mit.edu	37	4	40810384	40810384	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr4:40810384C>T	uc003gvj.3	+	12	2080	c.1585C>T	c.(1585-1587)CTG>TTG	p.L529L	NSUN7_uc003gvi.3_3'UTR	NM_024677	NP_078953			NOL1/NOP2/Sun domain family, member 7												0						AGCCAAGGGTCTGCTGGATGG	0.433													15	55					0	0	0.000422831	0	0
PDGFRA	5156	broad.mit.edu	37	4	55136799	55136799	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr4:55136799G>A	uc003han.3	+	8	1453	c.1122_splice	c.e8-1	p.R374_splice	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Splice_Site_p.R268_splice|PDGFRA_uc003ham.2_Splice_Site	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha						cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	TTTTTTAAAAGGTATCGAAGC	0.308			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			18	78					0	0	9.7654e-05	0	0
UGT2A3	79799	broad.mit.edu	37	4	69795746	69795746	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr4:69795746G>A	uc003hef.2	-	6	1400	c.1369C>T	c.(1369-1371)CGA>TGA	p.R457*	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	457	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						AAGACTGCTCGATCTAGGGGC	0.448													16	72					0	0	7.07596e-05	0	0
C4orf37	285555	broad.mit.edu	37	4	98762039	98762039	+	Silent	SNP	C	T	T	rs142342055		TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr4:98762039C>T	uc003htt.1	-	9	1179	c.1089G>A	c.(1087-1089)GAG>GAA	p.E363E		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	363											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		CTTGGGACATCTCATATGATT	0.358													26	103					0	0	9.22233e-05	0	0
SEC24D	9871	broad.mit.edu	37	4	119736203	119736203	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr4:119736203G>A	uc003ici.3	-	6	1053	c.781C>T	c.(781-783)CCT>TCT	p.P261S	SEC24D_uc003icj.3_Missense_Mutation_p.P262S|SEC24D_uc003icl.2_RNA|SEC24D_uc010imz.1_RNA|SEC24D_uc011cgg.1_RNA	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	261	Pro-rich.				COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						ATAGAGTCAGGATCCAGCTTC	0.522													30	60					0	0	0.000437636	0	0
TLL1	7092	broad.mit.edu	37	4	166996085	166996085	+	Silent	SNP	G	A	A	rs115884871	byFrequency	TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr4:166996085G>A	uc003irh.1	+	17	2891	c.2244G>A	c.(2242-2244)ACG>ACA	p.T748T	TLL1_uc011cjn.1_Silent_p.T771T|TLL1_uc011cjo.1_Silent_p.T572T	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	748	EGF-like 2; calcium-binding (Potential).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GTGTCAACACGATGGGGAGCT	0.383													21	75					0	0	0.000229342	0	0
TAS2R1	50834	broad.mit.edu	37	5	9629920	9629920	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr5:9629920G>A	uc003jem.1	-	1	544	c.225C>T	c.(223-225)TTC>TTT	p.F75F		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	75	Helical; Name=2; (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						AACACATGATGAATTCTATGA	0.393													7	25					0	0	8.12818e-05	0	0
CDH9	1007	broad.mit.edu	37	5	26915795	26915795	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr5:26915795C>T	uc003jgs.1	-	3	635	c.466G>A	c.(466-468)GAG>AAG	p.E156K	CDH9_uc010iug.2_Missense_Mutation_p.E156K	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	156	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						AATTTTGGCTCATTGTCATTG	0.373													36	84					0	0	0.000191422	0	0
BTF3	689	broad.mit.edu	37	5	72794965	72794965	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr5:72794965G>C	uc003kcr.1	+	2	382	c.139G>C	c.(139-141)GAA>CAA	p.E47Q	BTF3_uc010izd.1_Missense_Mutation_p.E47Q|BTF3_uc003kcq.1_Missense_Mutation_p.E3Q|BTF3_uc003kcs.1_RNA|BTF3_uc003kct.1_RNA	NM_001037637	NP_001032726	P20290	BTF3_HUMAN	basic transcription factor 3 isoform A	47					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding				0		Lung NSC(167;0.00405)|Ovarian(174;0.0175)		OV - Ovarian serous cystadenocarcinoma(47;2.73e-54)		CTAGATGAAAGAAACAATCAT	0.403													13	33					0	0	0.000308642	0	0
APC	324	broad.mit.edu	37	5	112175912	112175912	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr5:112175912C>T	uc010jby.2	+	16	5001	c.4621C>T	c.(4621-4623)CAG>TAG	p.Q1541*	APC_uc011cvt.1_Nonsense_Mutation_p.Q1523*|APC_uc003kpz.3_Nonsense_Mutation_p.Q1541*|APC_uc003kpy.3_Nonsense_Mutation_p.Q1541*|APC_uc010jbz.2_Nonsense_Mutation_p.Q1258*|APC_uc010jca.2_Nonsense_Mutation_p.Q841*	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1541	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.Q1541*(1)|p.K1192fs*3(1)|p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		AGAATCAGAGCAGCCTAAAGA	0.358		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			13	37					0	0	0.000151284	0	0
BRD8	10902	broad.mit.edu	37	5	137501759	137501760	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr5:137501759_137501760CC>AA	uc003lcf.1	-	11	1090_1091	c.1035_1036GG>TT	c.(1033-1038)GTGGGG>GTTTGG	p.G346W	BRD8_uc003lcc.1_RNA|BRD8_uc011cyl.1_Missense_Mutation_p.G125W|BRD8_uc003lcg.2_Missense_Mutation_p.G419W|BRD8_uc003lci.2_Missense_Mutation_p.G349W|BRD8_uc003lch.2_Missense_Mutation_p.G240W|BRD8_uc011cym.1_Missense_Mutation_p.G330W|BRD8_uc010jer.1_Missense_Mutation_p.G315W|BRD8_uc011cyn.1_Missense_Mutation_p.G305W	NM_139199	NP_631938	Q9H0E9	BRD8_HUMAN	bromodomain containing 8 isoform 2	346					cell surface receptor linked signaling pathway|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription from RNA polymerase II promoter	mitochondrion|NuA4 histone acetyltransferase complex	sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TGTGGATCCCCCACAGCCTCCA	0.46													7	110					0	0	6.4e-05	0	0
MATR3	9782	broad.mit.edu	37	5	138658193	138658193	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr5:138658193C>T	uc003ldu.2	+	14	2203	c.1776C>T	c.(1774-1776)TCC>TCT	p.S592S	MATR3_uc010jfb.2_Silent_p.S592S|MATR3_uc003ldt.2_Silent_p.S254S|MATR3_uc003ldw.2_Silent_p.S592S|MATR3_uc003ldx.2_Silent_p.S592S|MATR3_uc010jfc.2_Silent_p.S592S|MATR3_uc003ldy.2_Silent_p.S269S|MATR3_uc011czb.1_Silent_p.S304S|MATR3_uc003ldz.2_Silent_p.S592S|MATR3_uc003lea.2_Silent_p.S592S|MATR3_uc003leb.2_Silent_p.S254S|MATR3_uc003lec.2_Silent_p.S269S	NM_199189	NP_954659	P43243	MATR3_HUMAN	matrin 3	592						nuclear inner membrane|nuclear matrix	nucleotide binding|protein binding|RNA binding|structural molecule activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			AAGATAAATCCCGGTAATTTC	0.299													8	23					0	0	0.000274275	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481797	140481797	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr5:140481797G>A	uc003lio.2	+	1	1564	c.1564G>A	c.(1564-1566)GAG>AAG	p.E522K	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	522	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTGGACTACGAGGCCCTGCA	0.692													10	36					0	0	0.000566183	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573066	140573066	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr5:140573066C>T	uc003lix.2	+	1	1115	c.941C>T	c.(940-942)TCT>TTT	p.S314F		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	314	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTAGTAAATTCTTACAAAATA	0.373													13	36					0	0	0.00010058	0	0
SPINK5	11005	broad.mit.edu	37	5	147478852	147478852	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr5:147478852G>A	uc003lox.2	+	12	1139	c.1066G>A	c.(1066-1068)GAA>AAA	p.E356K	SPINK5_uc010jgs.1_Missense_Mutation_p.E328K|SPINK5_uc010jgr.2_Missense_Mutation_p.E337K|SPINK5_uc003low.2_Missense_Mutation_p.E356K|SPINK5_uc003loy.2_Missense_Mutation_p.E356K	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	356					anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAACAAAAGAGAATCTGGAAA	0.373													8	20					0	0	0.000442599	0	0
FBXO38	81545	broad.mit.edu	37	5	147796734	147796734	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr5:147796734C>T	uc003lpf.1	+	12	1705	c.1585C>T	c.(1585-1587)CTG>TTG	p.L529L	FBXO38_uc003lpg.1_Silent_p.L529L|FBXO38_uc003lph.2_Silent_p.L529L	NM_205836	NP_995308	Q6PIJ6	FBX38_HUMAN	F-box protein 38 isoform b	529						cytoplasm|nucleus				ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGGCAAGATCTGCAGCCAGG	0.428													9	23					0	0	6.40141e-05	0	0
DSP	1832	broad.mit.edu	37	6	7584611	7584611	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr6:7584611C>T	uc003mxp.1	+	24	7395	c.7116C>T	c.(7114-7116)ATC>ATT	p.I2372I	DSP_uc003mxq.1_Silent_p.I1773I	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2372	Plectin 10.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AAGCACAGATCGCAACCGGGG	0.438													29	51					0	0	0.00058488	0	0
NKAPL	222698	broad.mit.edu	37	6	28227983	28227983	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr6:28227983A>G	uc003nkt.2	+	1	886	c.834A>G	c.(832-834)ATA>ATG	p.I278M	ZKSCAN4_uc011dlb.1_5'Flank	NM_001007531	NP_001007532	Q5M9Q1	NKAPL_HUMAN	NFKB activating protein-like	278										upper_aerodigestive_tract(1)|ovary(1)	2						TGGATTTAATAGGGCCAGAAG	0.443													3	51					0	0	6.4e-05	0	0
KLHL32	114792	broad.mit.edu	37	6	97562161	97562162	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr6:97562161_97562162CC>TT	uc010kcm.1	+	7	1602_1603	c.1130_1131CC>TT	c.(1129-1131)TCC>TTT	p.S377F	KLHL32_uc003poy.2_Missense_Mutation_p.S377F|KLHL32_uc011ead.1_Missense_Mutation_p.S341F|KLHL32_uc003poz.2_Intron|KLHL32_uc011eae.1_Missense_Mutation_p.S308F|KLHL32_uc003ppa.2_Intron	NM_052904	NP_443136	Q96NJ5	KLH32_HUMAN	kelch-like 32	377	Kelch 2.									ovary(3)|skin(1)	4		all_cancers(76;1.19e-06)|Acute lymphoblastic leukemia(125;5.83e-10)|all_hematologic(75;3.67e-07)|all_epithelial(107;0.00778)|Colorectal(196;0.122)		BRCA - Breast invasive adenocarcinoma(108;0.0558)		CGCAGTAATTCCTGGGCAGAGA	0.569													7	24					0	0	6.4e-05	0	0
PRDM1	639	broad.mit.edu	37	6	106552727	106552728	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr6:106552727_106552728CG>AT	uc003prd.2	+	5	926_927	c.692_693CG>AT	c.(691-693)CCG>CAT	p.P231H	PRDM1_uc003pre.2_Missense_Mutation_p.P97H	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	231					negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		CTAAAGCAACCGAGCACTGAGA	0.446			D|N|Mis|F|S		DLBCL								9	138					0	0	6.4e-05	0	0
FAM184A	79632	broad.mit.edu	37	6	119283029	119283029	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr6:119283029G>T	uc003pyj.2	-	17	3586	c.3238C>A	c.(3238-3240)CGC>AGC	p.R1080S	FAM184A_uc003pyk.3_Missense_Mutation_p.R911S|FAM184A_uc003pyl.3_Missense_Mutation_p.R876S|FAM184A_uc003pyi.2_RNA	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	1080										ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						GGATCCAGGCGGTTAGGATGT	0.463													7	201					0.000274275	0.00463112	0.000274275	1	0
SYNE1	23345	broad.mit.edu	37	6	152809609	152809609	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr6:152809609C>T	uc010kiw.2	-	12	1571	c.969G>A	c.(967-969)ATG>ATA	p.M323I	SYNE1_uc003qot.3_Missense_Mutation_p.M330I|SYNE1_uc003qou.3_Missense_Mutation_p.M323I|SYNE1_uc010kjb.1_Missense_Mutation_p.M306I|SYNE1_uc003qpa.1_Missense_Mutation_p.M323I	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	323	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCCAAACTTTCATTTCCTTAA	0.303										HNSCC(10;0.0054)			15	29					0	0	0.000566183	0	0
HEATR2	54919	broad.mit.edu	37	7	796443	796444	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr7:796443_796444GG>TT	uc010krz.1	+	6	1302_1303	c.1282_1283GG>TT	c.(1282-1284)GGG>TTG	p.G428L	HEATR2_uc003siz.2_Missense_Mutation_p.G296L	NM_017802	NP_060272	Q86Y56	HEAT2_HUMAN	HEAT repeat containing 2	428							protein binding			skin(1)	1		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0182)|Epithelial(4;5.48e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.95e-16)|all cancers(6;2.98e-14)		AGAGCTCGTCGGGACGTTTGTC	0.609													7	136					0	0	6.4e-05	0	0
COL28A1	340267	broad.mit.edu	37	7	7516754	7516754	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr7:7516754G>A	uc003src.1	-	14	1339	c.1222C>T	c.(1222-1224)CCA>TCA	p.P408S	COL28A1_uc011jxe.1_Missense_Mutation_p.P91S|COL28A1_uc003srd.2_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	408					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		TTTGGTCCTGGAAATCCTTCT	0.373													27	71					0	0	0.000409698	0	0
ABCB5	340273	broad.mit.edu	37	7	20683156	20683156	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr7:20683156G>A	uc010kuh.2	+	7	816	c.579G>A	c.(577-579)TCG>TCA	p.S193S		NM_001163941	NP_001157413	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						CTACTTTTTCGATTGGCCTGG	0.428													22	86					0	0	0.000229342	0	0
PKD1L1	168507	broad.mit.edu	37	7	47894629	47894629	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr7:47894629C>T	uc003tny.1	-	30	4710	c.4710G>A	c.(4708-4710)AGG>AGA	p.R1570R		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1570	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TTTTATTTCTCCTATTATCCT	0.358													12	46					0	0	0.000219431	0	0
ABCA13	154664	broad.mit.edu	37	7	48315712	48315712	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr7:48315712C>T	uc003toq.2	+	17	6474	c.6449C>T	c.(6448-6450)ACC>ATC	p.T2150I	ABCA13_uc010kyr.2_Missense_Mutation_p.T1653I	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2150					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						ATTCCTGTGACCAATGAGAGT	0.333													7	14					0	0	8.12818e-05	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	73961560	73961560	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr7:73961560C>T	uc003uaq.2	+	17	2253	c.1860C>T	c.(1858-1860)ATC>ATT	p.I620I	GTF2IRD1_uc010lbq.2_Silent_p.I652I|GTF2IRD1_uc003uap.2_Silent_p.I620I|GTF2IRD1_uc003uar.1_Silent_p.I620I	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	620	GTF2I-like 3.					nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						GCTTCGGGATCGCCAAGCTCC	0.592													8	16					0	0	0.000442599	0	0
RUNDC3B	154661	broad.mit.edu	37	7	87445545	87445545	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr7:87445545G>A	uc003ujb.2	+	11	1655	c.1244G>A	c.(1243-1245)GGA>GAA	p.G415E	RUNDC3B_uc011khd.1_Missense_Mutation_p.G396E|RUNDC3B_uc011khe.1_Missense_Mutation_p.G398E|RUNDC3B_uc003ujc.2_Missense_Mutation_p.G349E|RUNDC3B_uc003ujd.2_Missense_Mutation_p.G271E	NM_138290	NP_612147	Q96NL0	RUN3B_HUMAN	RUN domain containing 3B isoform a	415										skin(1)	1	Esophageal squamous(14;0.00164)					GAAGGAGATGGAAAACAAGAC	0.358													13	27					0	0	0.00010058	0	0
TRRAP	8295	broad.mit.edu	37	7	98509802	98509802	+	Missense_Mutation	SNP	C	T	T	rs147405090		TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr7:98509802C>T	uc003upp.2	+	18	2374	c.2165C>T	c.(2164-2166)TCC>TTC	p.S722F	TRRAP_uc011kis.1_Missense_Mutation_p.S722F|TRRAP_uc003upr.2_Missense_Mutation_p.S414F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	722					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity	p.S722F(10)		ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GGCTCTGTCTCCCTCTTTGCA	0.413													28	49					0	0	0.000132358	0	0
TRRAP	8295	broad.mit.edu	37	7	98559084	98559084	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr7:98559084C>T	uc003upp.2	+	45	6878	c.6669C>T	c.(6667-6669)TTC>TTT	p.F2223F	TRRAP_uc011kis.1_Silent_p.F2205F|TRRAP_uc003upr.2_Silent_p.F1922F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2223	Interaction with TP53.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TGAGCATTTTCCCAACAGAGC	0.547													26	41					0	0	9.22233e-05	0	0
ST7	7982	broad.mit.edu	37	7	116862934	116862934	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr7:116862934C>T	uc003vin.2	+	16	1872	c.1658C>T	c.(1657-1659)TCG>TTG	p.S553L	ST7_uc011knl.1_Missense_Mutation_p.S530L|ST7_uc003vio.2_Intron|ST7_uc003viq.2_Intron|ST7_uc011knm.1_Intron|ST7_uc003vir.2_Intron|ST7_uc011knn.1_Intron	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	553						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		ATTTTCTGCTCGGCAGAGTTC	0.363													38	52					0	0	0.000509022	0	0
ZNF800	168850	broad.mit.edu	37	7	127017364	127017364	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr7:127017364A>T	uc003vlx.1	-	4	440	c.177T>A	c.(175-177)CAT>CAA	p.H59Q	ZNF800_uc003vlw.1_5'UTR|ZNF800_uc003vly.1_Missense_Mutation_p.H59Q|ZNF800_uc010lla.2_Missense_Mutation_p.H59Q	NM_176814	NP_789784	Q2TB10	ZN800_HUMAN	zinc finger protein 800	59					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TTAATAAAATATGCTTAAGTT	0.313													5	45					0	0	3.59834e-05	0	0
CHRM2	1129	broad.mit.edu	37	7	136700081	136700081	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr7:136700081C>T	uc003vtf.1	+	4	1092	c.469C>T	c.(469-471)CCA>TCA	p.P157S	CHRM2_uc003vtg.1_Missense_Mutation_p.P157S|CHRM2_uc003vtj.1_Missense_Mutation_p.P157S|CHRM2_uc003vtk.1_Missense_Mutation_p.P157S|CHRM2_uc003vtl.1_Missense_Mutation_p.P157S|CHRM2_uc003vtm.1_Missense_Mutation_p.P157S|CHRM2_uc003vti.1_Missense_Mutation_p.P157S|CHRM2_uc003vto.1_Missense_Mutation_p.P157S|CHRM2_uc003vtn.1_Missense_Mutation_p.P157S|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	157	Helical; Name=4; (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	CCTCTGGGCTCCAGCCATTCT	0.502													25	77					0	0	0.000117367	0	0
DENND2A	27147	broad.mit.edu	37	7	140221655	140221655	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr7:140221655C>T	uc010lnj.2	-	16	3056	c.2911G>A	c.(2911-2913)GGT>AGT	p.G971S	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Missense_Mutation_p.G971S|DENND2A_uc003vvw.2_Missense_Mutation_p.G971S	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	971										ovary(3)|breast(1)	4	Melanoma(164;0.00956)					TGCCCCTCACCTTTGGCATCC	0.597													20	58					0	0	0.000375601	0	0
TAS2R38	5726	broad.mit.edu	37	7	141673118	141673118	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr7:141673118G>A	uc003vwx.1	-	1	456	c.372C>T	c.(370-372)TTC>TTT	p.F124F		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	124	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					AGGTGTGAGAGAAACGGATGA	0.522													8	25					0	0	0.000157383	0	0
MGAM	8972	broad.mit.edu	37	7	141759716	141759716	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr7:141759716G>A	uc003vwy.2	+	33	4063	c.4009G>A	c.(4009-4011)GAT>AAT	p.D1337N		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1337	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GGGCGTGGAGGATGACGTCTT	0.493													5	29					0	0	3.59834e-05	0	0
ZNF777	27153	broad.mit.edu	37	7	149129502	149129502	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr7:149129502G>A	uc003wfv.2	-	6	2024	c.1861C>T	c.(1861-1863)CCC>TCC	p.P621S		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	621					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			GGTGACTTGGGACGCGGCTTG	0.667													33	99					0	0	0.000270559	0	0
ARHGEF10	9639	broad.mit.edu	37	8	1842672	1842672	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr8:1842672C>T	uc003wpr.2	+	13	1552	c.1374C>T	c.(1372-1374)ATC>ATT	p.I458I	ARHGEF10_uc003wpq.1_Silent_p.I483I|ARHGEF10_uc003wps.2_Silent_p.I420I|ARHGEF10_uc003wpt.2_Silent_p.I334I|ARHGEF10_uc003wpv.2_Silent_p.I191I|ARHGEF10_uc010lre.2_Silent_p.I138I	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	483	DH.				centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		TATTTCAGATCGCGCTGGCCA	0.552													10	36					0	0	3.86212e-05	0	0
USP17L2	377630	broad.mit.edu	37	8	11994741	11994741	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr8:11994741C>T	uc003wvc.1	-	1	1529	c.1529G>A	c.(1528-1530)GGG>GAG	p.G510E	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	510					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						CCTGGTCCTCCCTTGCAGAGA	0.552													12	57					0	0	0.00010058	0	0
SLC7A2	6542	broad.mit.edu	37	8	17412158	17412158	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr8:17412158C>T	uc011kyc.1	+	7	1314	c.1145C>T	c.(1144-1146)TCC>TTC	p.S382F	SLC7A2_uc011kyd.1_Intron|SLC7A2_uc011kye.1_Missense_Mutation_p.S422F|SLC7A2_uc011kyf.1_Missense_Mutation_p.S382F	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	382	Cytoplasmic (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	CAAATCAATTCCAAAACGAAG	0.413													36	112					0	0	0.000191422	0	0
TMEM66	51669	broad.mit.edu	37	8	29927235	29927235	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr8:29927235G>A	uc003xhs.2	-	3	807	c.623C>T	c.(622-624)CCT>CTT	p.P208L	TMEM66_uc003xht.2_Missense_Mutation_p.P208L|TMEM66_uc003xhu.2_Missense_Mutation_p.P172L|TMEM66_uc003xhv.2_Missense_Mutation_p.P36L	NM_016127	NP_057211	Q96BY9	TMM66_HUMAN	transmembrane protein 66 precursor	208						integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(542;0.0993)|Kidney(114;0.119)		GGAAAATGGAGGATACTCAGA	0.507													9	86					0	0	3.86212e-05	0	0
OPRK1	4986	broad.mit.edu	37	8	54142243	54142243	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr8:54142243G>A	uc003xrh.1	-	3	1132	c.757C>T	c.(757-759)CTC>TTC	p.L253F	OPRK1_uc003xri.1_Missense_Mutation_p.L253F|OPRK1_uc010lyc.1_Missense_Mutation_p.L164F	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	253	Cytoplasmic (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	ACGCTCTTGAGACGCAGGATC	0.557													18	42					0	0	0.000295444	0	0
ZFHX4	79776	broad.mit.edu	37	8	77620004	77620004	+	Silent	SNP	A	G	G			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr8:77620004A>G	uc003yav.2	+	3	3123	c.2736A>G	c.(2734-2736)GTA>GTG	p.V912V	ZFHX4_uc003yat.1_Silent_p.V912V|ZFHX4_uc003yau.1_Silent_p.V938V|ZFHX4_uc003yaw.1_Silent_p.V912V	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	912						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GGAGGGCAGTAATTGGAGATA	0.478										HNSCC(33;0.089)			3	23					0	0	6.4e-05	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885116	88885116	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr8:88885116C>T	uc003ydz.2	-	1	1181	c.1084G>A	c.(1084-1086)GAC>AAC	p.D362N		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	362										ovary(1)	1						CTGGGAATGTCGTTCTCCGAG	0.627													14	39					0	0	0.000219431	0	0
DPY19L4	286148	broad.mit.edu	37	8	95790003	95790004	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr8:95790003_95790004CC>AA	uc003ygx.2	+	14	1688_1689	c.1564_1565CC>AA	c.(1564-1566)CCA>AAA	p.P522K		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	522	Helical; (Potential).					integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					AACTGTACACCCAATATTGTTG	0.337													14	522					0	0	6.4e-05	0	0
TRHR	7201	broad.mit.edu	37	8	110100013	110100013	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr8:110100013G>A	uc003ymz.3	+	1	288	c.272G>A	c.(271-273)TGG>TAG	p.W91*		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	91	Extracellular (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			TACGGTTCCTGGGTCTATGGC	0.493													27	84					0	0	0.000339439	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457323	110457323	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr8:110457323C>T	uc003yne.2	+	38	5329	c.5225C>T	c.(5224-5226)TCA>TTA	p.S1742L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1742	IPT/TIG 9.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGCACCTTTTCATACTTAGAA	0.448										HNSCC(38;0.096)			30	89					0	0	0.000227799	0	0
TNFRSF11B	4982	broad.mit.edu	37	8	119936987	119936987	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr8:119936987C>T	uc003yon.3	-	5	1155	c.832G>A	c.(832-834)GAA>AAA	p.E278K		NM_002546	NP_002537	O00300	TR11B_HUMAN	osteoprotegerin precursor	278	Death 2.				apoptosis|skeletal system development		cytokine activity|receptor activity			central_nervous_system(2)	2	all_cancers(13;3.71e-26)|Lung NSC(37;1.69e-07)|Ovarian(258;0.018)|all_neural(195;0.0592)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00193)			ACGCTGTTTTCACAGAGGTCA	0.448													14	50					0	0	0.000308642	0	0
FAM135B	51059	broad.mit.edu	37	8	139164357	139164357	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr8:139164357G>T	uc003yuy.2	-	13	2532	c.2361C>A	c.(2359-2361)GAC>GAA	p.D787E	FAM135B_uc003yux.2_Missense_Mutation_p.D688E|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.D349E|FAM135B_uc003yvb.2_Missense_Mutation_p.D349E	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	787										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GCTGCTTGGTGTCCGCATCTT	0.517										HNSCC(54;0.14)			7	31					1.12685e-05	0.000193988	0.000274275	1	0
SLC45A4	57210	broad.mit.edu	37	8	142221650	142221650	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr8:142221650A>T	uc003ywd.1	-	8	2596	c.2288T>A	c.(2287-2289)TTC>TAC	p.F763Y	SLC45A4_uc003ywc.1_3'UTR|SLC45A4_uc010meq.1_3'UTR	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	Error:Variant_position_missing_in_Q5BKX6_after_alignment					transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CTCGCTGAGGAAAAGAAGATA	0.493													36	118					0	0	0.000509022	0	0
TSNARE1	203062	broad.mit.edu	37	8	143395785	143395785	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr8:143395785G>A	uc003ywk.2	-	9	1209	c.1091C>T	c.(1090-1092)TCC>TTC	p.S364F	TSNARE1_uc011lju.1_Missense_Mutation_p.S363F|TSNARE1_uc003ywj.2_Missense_Mutation_p.S364F|TSNARE1_uc003ywl.3_Missense_Mutation_p.S144F	NM_145003	NP_659440	Q96NA8	TSNA1_HUMAN	t-SNARE domain containing 1	364					vesicle-mediated transport	integral to membrane					0	all_cancers(97;7.39e-11)|all_epithelial(106;8.98e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000332)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CAGCGCTCTGGACTTTTCTGC	0.532													7	24					0	0	0.000274275	0	0
HSF1	3297	broad.mit.edu	37	8	145535747	145535747	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr8:145535747C>T	uc003zbt.3	+	9	1129	c.959C>T	c.(958-960)TCC>TTC	p.S320F	HSF1_uc003zbu.3_RNA	NM_005526	NP_005517	Q00613	HSF1_HUMAN	heat shock transcription factor 1	320						cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.94e-40)|Epithelial(56;1.12e-39)|all cancers(56;9.11e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0547)|Colorectal(110;0.055)			CGCCCATCTTCCGTGGACACC	0.706													14	44					0	0	0.000219431	0	0
IFNA13	3447	broad.mit.edu	37	9	21367911	21367911	+	Silent	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr9:21367911C>T	uc003zpa.2	-	1	165	c.99G>A	c.(97-99)CTG>CTA	p.L33L		NM_006900	NP_008831	P01562	IFNA1_HUMAN	interferon, alpha 13 precursor	32					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			ovary(1)	1				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.0173)		TCCTGTTATCCAGGCTGTGGG	0.542													13	19					0	0	9.7654e-05	0	0
C9orf131	138724	broad.mit.edu	37	9	35044878	35044878	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr9:35044878G>A	uc003zvw.2	+	2	2281	c.2252G>A	c.(2251-2253)GGA>GAA	p.G751E	C9orf131_uc003zvu.2_Missense_Mutation_p.G703E|C9orf131_uc003zvv.2_Missense_Mutation_p.G678E|C9orf131_uc003zvx.2_Missense_Mutation_p.G716E	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	751											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)			CTACCCAAGGGAGTAACGTGC	0.602													17	33					0	0	0.000422831	0	0
HNRNPK	3190	broad.mit.edu	37	9	86588850	86588850	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr9:86588850G>A	uc004ang.3	-	8	593	c.369C>T	c.(367-369)CTC>CTT	p.L123L	HNRNPK_uc011lsw.1_5'UTR|HNRNPK_uc004and.3_5'UTR|HNRNPK_uc004ank.3_Silent_p.L123L|HNRNPK_uc004anf.3_Silent_p.L123L|HNRNPK_uc004anh.3_Intron|HNRNPK_uc011lsx.1_Intron|HNRNPK_uc004ani.3_Silent_p.L123L|HNRNPK_uc004anj.3_Silent_p.L123L|HNRNPK_uc004ann.3_Intron|HNRNPK_uc004anl.3_Silent_p.L123L|HNRNPK_uc004anm.3_Silent_p.L123L	NM_031262	NP_112552	P61978	HNRPK_HUMAN	heterogeneous nuclear ribonucleoprotein K	123	5 X 4 AA repeats of G-X-G-G.|Necessary for interaction with DDX1.|2 X 22 AA approximate repeats.|Interaction with ASFV p30.				interspecies interaction between organisms|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of receptor-mediated endocytosis|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of low-density lipoprotein particle clearance|signal transduction	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nuclear chromatin|nucleoplasm	protein binding|RNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|single-stranded DNA binding			skin(1)	1						ATTCGAGCGGGAGCTGGCTGG	0.458													9	33					0	0	6.40141e-05	0	0
OR13C8	138802	broad.mit.edu	37	9	107331799	107331799	+	Silent	SNP	G	A	A	rs140558238		TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr9:107331799G>A	uc011lvo.1	+	1	351	c.351G>A	c.(349-351)ACG>ACA	p.T117T		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCTTAGGCACGATGGCACTGG	0.522													15	22					0	0	0.000219431	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112686019	112686019	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr9:112686019G>A	uc004bei.2	+	4	454	c.262G>A	c.(262-264)GAG>AAG	p.E88K	PALM2_uc004bef.2_Missense_Mutation_p.E90K|PALM2_uc004beg.2_Missense_Mutation_p.E90K|PALM2_uc004beh.3_Missense_Mutation_p.E88K|PALM2-AKAP2_uc004bek.3_Missense_Mutation_p.E88K|PALM2-AKAP2_uc004bej.3_Missense_Mutation_p.E88K|PALM2-AKAP2_uc004bel.1_5'UTR	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						TTCCAGGCTGGAGCAAGAAAT	0.443													5	4					0	0	3.59834e-05	0	0
ZNF883	169834	broad.mit.edu	37	9	115760080	115760080	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr9:115760080C>T	uc011lwy.1	-	5	1699	c.460G>A	c.(460-462)GAA>AAA	p.E154K		NM_001101338	NP_001094808	P0CG24	ZN883_HUMAN	hypothetical protein LOC169834	154	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCAGTACATTCATATGGTTTC	0.403													20	32					0	0	9.7654e-05	0	0
PAPPA	5069	broad.mit.edu	37	9	119115959	119115959	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr9:119115959C>T	uc004bjn.2	+	17	4615	c.4234C>T	c.(4234-4236)CCT>TCT	p.P1412S	PAPPA_uc011lxq.1_Missense_Mutation_p.P787S	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1412	Sushi 3.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						AGCTTGTGTTCCTGTGACCTG	0.507													21	34					0	0	0.000229342	0	0
ARSD	414	broad.mit.edu	37	X	2828785	2828785	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chrX:2828785G>A	uc004cqy.2	-	7	1126	c.1050C>T	c.(1048-1050)TTC>TTT	p.F350F	ARSD_uc004cqz.1_Intron	NM_001669	NP_001660	P51689	ARSD_HUMAN	arylsulfatase D isoform a precursor	350						lysosome	arylsulfatase activity|metal ion binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TGAAATACGTGAATGTTGAGT	0.423													37	40					0	0	0.000191422	0	0
PHKA2	5256	broad.mit.edu	37	X	18959728	18959728	+	Silent	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chrX:18959728G>A	uc004cyv.3	-	8	1213	c.783C>T	c.(781-783)TCC>TCT	p.S261S	PHKA2_uc010nfh.1_RNA|PHKA2_uc010nfi.1_Silent_p.S170S	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)	261					glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					AGGAAATAATGGAAAGAAGTC	0.403													21	14					0	0	0.000375601	0	0
MAGEB1	4112	broad.mit.edu	37	X	30268851	30268851	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chrX:30268851G>A	uc004dcc.2	+	4	561	c.241G>A	c.(241-243)GAA>AAA	p.E81K	MAGEB1_uc004dcd.2_Missense_Mutation_p.E81K|MAGEB1_uc004dce.2_Missense_Mutation_p.E81K	NM_002363	NP_002354	P43366	MAGB1_HUMAN	melanoma antigen family B, 1	81											0						CGAATCTGACGAAGGTGCCAA	0.557													5	6					0	0	3.59834e-05	0	0
GPR34	2857	broad.mit.edu	37	X	41555861	41555861	+	Silent	SNP	C	G	G			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chrX:41555861C>G	uc004dfp.3	+	3	1259	c.975C>G	c.(973-975)GTC>GTG	p.V325V	CASK_uc004dfl.3_Intron|CASK_uc004dfm.3_Intron|CASK_uc004dfn.3_Intron|GPR34_uc004dfq.3_Silent_p.V325V|GPR34_uc010nhg.2_Silent_p.V325V|GPR34_uc004dfr.3_Silent_p.V325V	NM_001097579	NP_001091048	Q9UPC5	GPR34_HUMAN	G protein-coupled receptor 34	325	Helical; Name=7; (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1						TAGATCCAGTCATGTATTTCC	0.373													3	28					0	0	6.4e-05	0	0
NXF3	56000	broad.mit.edu	37	X	102338384	102338384	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chrX:102338384C>T	uc004eju.2	-	5	553	c.482G>A	c.(481-483)AGC>AAC	p.S161N	NXF3_uc010noi.1_Missense_Mutation_p.S11N|NXF3_uc011mrw.1_Missense_Mutation_p.S161N|NXF3_uc011mrx.1_Missense_Mutation_p.S72N	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	161	RRM.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						ATAGGCGATGCTGGCATTCTC	0.448													21	24					0	0	0.000586117	0	0
TCEAL7	56849	broad.mit.edu	37	X	102586467	102586467	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chrX:102586467G>A	uc004ekc.1	+	3	349	c.136G>A	c.(136-138)GAA>AAA	p.E46K		NM_152278	NP_689491	Q9BRU2	TCAL7_HUMAN	transcription elongation factor A (SII)-like 7	46					negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				upper_aerodigestive_tract(1)	1						tcagtctctcgaagaatttaa	0													16	25					0	0	0.000308642	0	0
MUM1L1	139221	broad.mit.edu	37	X	105449585	105449585	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chrX:105449585G>A	uc004emf.1	+	4	809	c.160G>A	c.(160-162)GAA>AAA	p.E54K	MUM1L1_uc004emg.1_Missense_Mutation_p.E54K	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	54										ovary(2)|pancreas(1)|skin(1)	4						GGACAGCACAGAAACAAAGAT	0.388													9	10					0	0	0.000274275	0	0
SAGE1	55511	broad.mit.edu	37	X	134989136	134989136	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chrX:134989136C>T	uc004ezh.2	+	8	955	c.788C>T	c.(787-789)CCC>CTC	p.P263L	SAGE1_uc010nry.1_Missense_Mutation_p.P232L|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	263										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AAGGGCCAACCCCAACCTGAT	0.463													23	18					0	0	0.000295444	0	0
JAK2	3717	broad.mit.edu	37	9	5055745	5055745	+	Frame_Shift_Del	DEL	A	-	-			TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr9:5055745delA	uc010mhm.2	+	7	1126	c.1013delA	c.(1012-1014)GAAfs	p.E338fs	JAK2_uc003ziw.2_Frame_Shift_Del_p.E338fs	NM_004972	NP_004963	O60674	JAK2_HUMAN	Janus kinase 2	338	FERM.				actin filament polymerization|activation of caspase activity by protein phosphorylation|activation of JAK2 kinase activity|blood coagulation|cellular component movement|erythrocyte differentiation|interferon-gamma-mediated signaling pathway|interleukin-12-mediated signaling pathway|JAK-STAT cascade involved in growth hormone signaling pathway|mammary gland epithelium development|mesoderm development|negative regulation of cell proliferation|negative regulation of DNA binding|positive regulation of apoptosis|positive regulation of cell-substrate adhesion|positive regulation of growth hormone receptor signaling pathway|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|protein autophosphorylation|regulation of inflammatory response|regulation of interferon-gamma-mediated signaling pathway|response to antibiotic|response to lipopolysaccharide|STAT protein import into nucleus|tumor necrosis factor-mediated signaling pathway|tyrosine phosphorylation of STAT protein	caveola|cytoskeleton|cytosol|endomembrane system|nucleus	ATP binding|growth hormone receptor binding|heme binding|histone binding|histone kinase activity (H3-Y41 specific)|interleukin-12 receptor binding|non-membrane spanning protein tyrosine kinase activity|protein kinase binding|SH2 domain binding		PCM1/JAK2(30)|PAX5/JAK2(18)|ETV6/JAK2(11)|BCR/JAK2(6)|SSBP2/JAK2(4)|SEC31A/JAK2(4)	haematopoietic_and_lymphoid_tissue(28629)|lung(5)|breast(5)|ovary(1)|liver(1)	28641	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0198)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0237)|Lung(218;0.133)		GGTTCAAATGAAAGCCGAGTT	0.294		1	T|Mis|O	ETV6|PCM1|BCR	ALL|AML|MPD| CML				Polycythemia_Vera_Familial				11	24	---	---	---	---					
C9orf150	286343	broad.mit.edu	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	GGCGGCGGC	GGCGGCGGC	rs139315731	by1000genomes	TCGA-FS-A1ZB-06A-12D-A197-08	TCGA-FS-A1ZB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	028bca79-1c1c-43b4-9076-63516255f81d	ff8b8f87-3191-4f84-b85b-28cf388044b4	g.chr9:12775861_12775862insGGCGGCGGC	uc003zkw.2	+	1	850_851	c.147_148insGGCGGCGGC	c.(145-150)insGGCGGCGGC	p.55_56insGGG		NM_203403	NP_981948	Q8IV03	CI150_HUMAN	hypothetical protein LOC286343	58_59	Gly-rich.										0				GBM - Glioblastoma multiforme(1;1.64e-13)		gcggtggtggtggcggcggcgg	0.505													3	3	---	---	---	---					
