Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PLCH2	9651	broad.mit.edu	37	1	2410049	2410049	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:2410049G>A	uc001aji.1	+	2	533	c.259G>A	c.(259-261)GAG>AAG	p.E87K	PLCH2_uc010nyz.1_5'Flank|PLCH2_uc009vle.1_5'Flank|PLCH2_uc001ajj.1_5'Flank|PLCH2_uc001ajk.1_5'Flank	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	87	PH.|Necessary for plasma membrane localization (By similarity).				intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		ACGCAAGAACGAGAAGGCCAA	0.652													5	5					0	0	0.00198382	0	0
PER3	8863	broad.mit.edu	37	1	7863183	7863183	+	Missense_Mutation	SNP	C	T	T	rs145870917		TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:7863183C>T	uc001aoo.2	+	8	1121	c.946C>T	c.(946-948)CGT>TGT	p.R316C	PER3_uc009vmg.1_Missense_Mutation_p.R317C|PER3_uc009vmh.1_Missense_Mutation_p.R317C|PER3_uc001aop.2_Missense_Mutation_p.R317C|PER3_uc010nzw.1_5'UTR|PER3_uc001aon.2_Missense_Mutation_p.R316C	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	316	PAS 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		CCCTGAAGATCGTTCTCTGAT	0.428													27	90					0	0	0.00106085	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12939629	12939629	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:12939629G>A	uc001aun.2	-	4	1244	c.1173C>T	c.(1171-1173)CCC>CCT	p.P391P		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	391	LRR 6.									ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CCATGCAGATGGGATTTCCAC	0.527													128	106					0	0	0.000781405	0	0
PADI6	353238	broad.mit.edu	37	1	17720899	17720899	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:17720899G>A	uc001bak.1	+	12	1286	c.1286G>A	c.(1285-1287)GGG>GAG	p.G429E		NM_207421	NP_997304	Q6TGC4	PADI6_HUMAN	peptidylarginine deiminase type 6	421					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	AAGGTCCAAGGGAAAGAGTAC	0.547													4	9					0	0	0.00024832	0	0
HSPG2	3339	broad.mit.edu	37	1	22174253	22174253	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:22174253C>T	uc001bfj.2	-	61	7994	c.7954G>A	c.(7954-7956)GTG>ATG	p.V2652M	HSPG2_uc009vqd.2_Missense_Mutation_p.V2653M	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	2652	Ig-like C2-type 12.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CTGGCGACCACGCAGTTCAGA	0.647													6	10					0	0	0.00116845	0	0
EPHA8	2046	broad.mit.edu	37	1	22927916	22927916	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:22927916C>T	uc001bfx.1	+	16	2978	c.2853C>T	c.(2851-2853)TTC>TTT	p.F951F		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	951	Cytoplasmic (Potential).|SAM.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GAGACCACTTCGCTGCGGGCG	0.701													16	31					0	0	0.000958276	0	0
RPS6KA1	6195	broad.mit.edu	37	1	26873441	26873441	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:26873441C>T	uc001bmr.1	+	3	355	c.192C>T	c.(190-192)CTC>CTT	p.L64L	RPS6KA1_uc010ofe.1_Intron|RPS6KA1_uc010off.1_Silent_p.L48L|RPS6KA1_uc001bms.1_Silent_p.L73L|RPS6KA1_uc009vsl.1_5'UTR	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	64	Protein kinase 1.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		ATTTCGAGCTCCTCAAGGTTC	0.562													29	20					0	0	0.00209593	0	0
SPOCD1	90853	broad.mit.edu	37	1	32280643	32280643	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:32280643G>A	uc001bts.1	-	2	350	c.292C>T	c.(292-294)CCT>TCT	p.P98S	SPOCD1_uc001btu.2_Missense_Mutation_p.P98S|SPOCD1_uc001btv.2_Intron	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	98					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		TGGAGCCCAGGAGCCAGCATC	0.627													24	17					0	0	0.000586117	0	0
EIF2C4	192670	broad.mit.edu	37	1	36315797	36315797	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:36315797G>A	uc001bzj.1	+	16	2405	c.2215G>A	c.(2215-2217)GAT>AAT	p.D739N		NM_017629	NP_060099	Q9HCK5	AGO4_HUMAN	eukaryotic translation initiation factor 2C, 4	739	Piwi.				mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CACTACAGTGGATAGTACCAT	0.403													55	41					0	0	0.000781405	0	0
MACF1	23499	broad.mit.edu	37	1	39835860	39835860	+	Splice_Site	SNP	T	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:39835860T>C	uc010oiu.1	+	15	8546	c.8415_splice	c.e15+2	p.K2805_splice	MACF1_uc010ois.1_Splice_Site_p.K2303_splice|MACF1_uc001cda.1_Splice_Site_p.K2211_splice|MACF1_uc001cdc.1_Splice_Site_p.K1390_splice|MACF1_uc001cdb.1_Splice_Site_p.K1390_splice	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker						cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CACCTGAAGGTAGGTGAACAA	0.428													10	6					0	0	0.000442599	0	0
ZNF643	65243	broad.mit.edu	37	1	40929140	40929140	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:40929140G>A	uc001cfn.1	+	5	1781	c.1484G>A	c.(1483-1485)AGA>AAA	p.R495K	ZNF643_uc001cfl.1_Missense_Mutation_p.R393K|ZNF643_uc001cfm.1_Missense_Mutation_p.R361K	NM_023070	NP_075558	Q9UJL9	ZN643_HUMAN	zinc finger protein 643	495	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.25e-18)			AAACATCAGAGAATTCATACT	0.373													32	16					0	0	0.00178596	0	0
ZSWIM5	57643	broad.mit.edu	37	1	45506071	45506071	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:45506071C>T	uc001cnd.2	-	7	1977	c.1749G>A	c.(1747-1749)CAG>CAA	p.Q583Q		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	583							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					TACCTTTCTTCTGATGCTTGT	0.438													42	36					0	0	0.000781405	0	0
L1TD1	54596	broad.mit.edu	37	1	62672641	62672641	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:62672641G>A	uc001dae.3	+	3	643	c.341G>A	c.(340-342)GGG>GAG	p.G114E		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	114										ovary(1)|skin(1)	2						caaaaaacagggatggtaggg	0.05													80	76					0	0	0.000781405	0	0
TMEM56	148534	broad.mit.edu	37	1	95609521	95609521	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:95609521C>T	uc001drb.2	+	2	355	c.64C>T	c.(64-66)CTT>TTT	p.L22F	RWDD3_uc001drd.3_Missense_Mutation_p.L22F|TMEM56_uc001drc.2_Missense_Mutation_p.L22F	NM_152487	NP_689700	Q96MV1	TMM56_HUMAN	transmembrane protein 56	22	Helical; (Potential).					integral to membrane					0		all_lung(203;0.0232)|Lung NSC(277;0.0739)		all cancers(265;0.133)		CTTTCAGCTTCTTTTCTACTT	0.348													20	47					0	0	0.00188189	0	0
ATXN7L2	127002	broad.mit.edu	37	1	110033883	110033883	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:110033883G>A	uc001dxr.2	+	10	1713	c.1698G>A	c.(1696-1698)GAG>GAA	p.E566E	ATXN7L2_uc001dxs.2_Silent_p.E193E|ATXN7L2_uc001dxt.2_Silent_p.E69E|CYB561D1_uc010ovl.1_5'Flank|CYB561D1_uc010ovm.1_5'Flank|CYB561D1_uc001dxu.2_5'Flank|CYB561D1_uc001dxw.2_5'Flank|CYB561D1_uc010ovn.1_5'Flank|CYB561D1_uc010ovo.1_5'Flank|CYB561D1_uc009wfd.2_5'Flank|CYB561D1_uc010ovp.1_5'Flank	NM_153340	NP_699171	Q5T6C5	AT7L2_HUMAN	ataxin 7-like 2	566										ovary(2)	2		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0426)|Epithelial(280;0.0675)|READ - Rectum adenocarcinoma(129;0.0693)|all cancers(265;0.071)|LUSC - Lung squamous cell carcinoma(189;0.228)		TGGAGGTGGAGGCCCCTTCTC	0.607													197	154					0	0	0.000781405	0	0
HAO2	51179	broad.mit.edu	37	1	119923791	119923791	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:119923791G>A	uc001ehq.1	+	3	435	c.83G>A	c.(82-84)GGA>GAA	p.G28E	HAO2_uc001ehr.1_Missense_Mutation_p.G28E	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	28	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		ATTGAAGGTGGAGCAGATGAC	0.483													36	75					0	0	0.000692331	0	0
REG4	83998	broad.mit.edu	37	1	120342418	120342418	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:120342418G>A	uc001eig.2	-	5	673	c.233C>T	c.(232-234)ACC>ATC	p.T78I	REG4_uc001eif.2_Missense_Mutation_p.T78I	NM_001159352	NP_001152824	Q9BYZ8	REG4_HUMAN	regenerating islet-derived family, member 4	78	C-type lectin.					extracellular region	sugar binding			ovary(1)	1	all_cancers(5;4.81e-10)|all_epithelial(5;7.98e-11)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;8.1e-07)|Lung NSC(69;5.89e-06)|all_epithelial(167;0.000959)		Lung(183;0.011)|LUSC - Lung squamous cell carcinoma(189;0.0588)		CTCTGCTATGGTGCTGGCTTC	0.512													120	263					0	0	0.000781405	0	0
NOTCH2	4853	broad.mit.edu	37	1	120458415	120458415	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:120458415G>A	uc001eik.2	-	34	7186	c.6930C>T	c.(6928-6930)ATC>ATT	p.I2310I		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	2310	Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGCCTTTAGGGATGAGCTGGA	0.632			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				114	283					0	0	0.000781405	0	0
NOTCH2	4853	broad.mit.edu	37	1	120497814	120497814	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:120497814G>A	uc001eik.2	-	13	2324	c.2068C>T	c.(2068-2070)CCC>TCC	p.P690S	NOTCH2_uc001eil.2_Missense_Mutation_p.P690S|NOTCH2_uc001eim.3_Missense_Mutation_p.P607S	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	690	EGF-like 18; calcium-binding (Potential).|Extracellular (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTGCGACAGGGATTGGAGGCA	0.507			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				294	183					0	0	0.000781405	0	0
NBPF10	100132406	broad.mit.edu	37	1	146398324	146398324	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:146398324C>T	uc001emp.3	+	13	2321	c.1123C>T	c.(1123-1125)CGA>TGA	p.R375*	uc010ozk.1_Translation_Start_Site	NM_017940	NP_060410	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC55672	104											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		CTCTCAGGAACGAGAGCTGAC	0.493													77	56					0	0	0.000781405	0	0
FMO5	2330	broad.mit.edu	37	1	146658801	146658801	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:146658801G>A	uc001epi.2	-	9	1669	c.1280C>T	c.(1279-1281)ACC>ATC	p.T427I	FMO5_uc001eph.3_Intron|FMO5_uc001epj.2_3'UTR	NM_001461	NP_001452	P49326	FMO5_HUMAN	flavin containing monooxygenase 5 isoform 1	427						integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			ovary(3)	3	all_hematologic(923;0.0487)					TCCCTGAATGGTATGGCGTTG	0.403													12	4					0	0	0.00185496	0	0
NPR1	4881	broad.mit.edu	37	1	153665653	153665653	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:153665653C>T	uc001fcs.3	+	21	3524	c.3103C>T	c.(3103-3105)CGA>TGA	p.R1035*	NPR1_uc010pdz.1_Nonsense_Mutation_p.R781*|NPR1_uc010pea.1_Nonsense_Mutation_p.R513*	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	1035	Cytoplasmic (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	GCTGGAGCTTCGAGGGGATGT	0.562													32	76					0	0	0.000692331	0	0
OR10J5	127385	broad.mit.edu	37	1	159505705	159505705	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:159505705G>A	uc010piw.1	-	1	93	c.93C>T	c.(91-93)TTC>TTT	p.F31F		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					AGACAGTTAGGAAAACCACAA	0.378													18	41					0	0	0.00152264	0	0
VSIG8	391123	broad.mit.edu	37	1	159827671	159827671	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:159827671G>A	uc001fuh.2	-	4	652	c.516C>T	c.(514-516)GGC>GGT	p.G172G	C1orf204_uc001fuf.1_5'Flank|C1orf204_uc001fug.1_5'Flank	NM_001013661	NP_001013683	Q5VU13	VSIG8_HUMAN	V-set and immunoglobulin domain containing 8	172	Extracellular (Potential).|Ig-like V-type 2.					integral to membrane				central_nervous_system(1)	1	all_hematologic(112;0.0597)					GGGGCTGGGAGCCCCCACTGG	0.587													41	14					0	0	0.00285205	0	0
TMEM9	252839	broad.mit.edu	37	1	201113056	201113056	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:201113056G>A	uc001gvw.2	-	5	613	c.291C>T	c.(289-291)TCC>TCT	p.S97S	TMEM9_uc001gvx.2_Silent_p.S97S|TMEM9_uc001gvy.2_Silent_p.S97S|TMEM9_uc010ppo.1_Silent_p.S122S|TMEM9_uc001gvz.2_Silent_p.S100S|TMEM9_uc001gwa.2_Silent_p.S97S	NM_016456	NP_057540	Q9P0T7	TMEM9_HUMAN	transmembrane protein 9 precursor	97	Helical; (Potential).				transport	integral to membrane|late endosome membrane|lysosomal membrane					0		Breast(1374;0.000301)				CACCCACCACGGACAGGTAGA	0.522													5	37					0	0	0.00116845	0	0
LRRN2	10446	broad.mit.edu	37	1	204588493	204588493	+	Missense_Mutation	SNP	G	A	A	rs141989916	byFrequency	TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:204588493G>A	uc001hbe.1	-	3	1016	c.628C>T	c.(628-630)CGG>TGG	p.R210W	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Missense_Mutation_p.R210W|LRRN2_uc009xbf.1_Missense_Mutation_p.R210W|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	210	Extracellular (Potential).|LRR 6.				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			GCCAGGGGCCGGAAGTTCATG	0.587													38	55					0	0	0.00222228	0	0
SRGAP2	23380	broad.mit.edu	37	1	206619607	206619608	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:206619607_206619608CC>TT	uc001hdy.2	+	15	2133_2134	c.1800_1801CC>TT	c.(1798-1803)GGCCCT>GGTTCT	p.P601S	SRGAP2_uc010prt.1_Missense_Mutation_p.P524S|SRGAP2_uc001hdx.2_Missense_Mutation_p.P601S|SRGAP2_uc010pru.1_Missense_Mutation_p.P524S|SRGAP2_uc010prv.1_Missense_Mutation_p.P525S	NM_015326	NP_056141	O75044	FNBP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 2	688					axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding				0	Breast(84;0.137)					AGCTGGAGGGCCCTGTCTACAG	0.589													91	85					0	0	6.4e-05	0	0
CR2	1380	broad.mit.edu	37	1	207648498	207648498	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:207648498C>T	uc001hfw.2	+	13	2570	c.2476C>T	c.(2476-2478)CGC>TGC	p.R826C	CR2_uc001hfv.2_Missense_Mutation_p.R885C|CR2_uc009xch.2_Missense_Mutation_p.R826C	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	826	Sushi 13.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						GAATGGTAGTCGCGTGATTAG	0.408													71	19					0	0	0.000781405	0	0
TRAF5	7188	broad.mit.edu	37	1	211545968	211545968	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:211545968C>T	uc001hih.2	+	11	1658	c.1598C>T	c.(1597-1599)GCC>GTC	p.A533V	TRAF5_uc001hii.2_Missense_Mutation_p.A533V|TRAF5_uc010psx.1_Missense_Mutation_p.A544V|TRAF5_uc010psy.1_Missense_Mutation_p.A427V|TRAF5_uc001hij.2_Missense_Mutation_p.A533V	NM_004619	NP_004610	O00463	TRAF5_HUMAN	TNF receptor-associated factor 5	533	MATH.				apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis	CD40 receptor complex|centrosome|internal side of plasma membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)|breast(2)|ovary(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00946)|all cancers(67;0.0808)|Epithelial(68;0.144)		TTGGAGAATGCCAAGAACGCC	0.473													26	82					0	0	0.00047179	0	0
FLVCR1	28982	broad.mit.edu	37	1	213032489	213032489	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:213032489A>C	uc001hjt.2	+	1	893	c.695A>C	c.(694-696)AAA>ACA	p.K232T	LQK1_uc001hjr.3_5'Flank|LQK1_uc001hjs.3_5'Flank	NM_014053	NP_054772	Q9Y5Y0	FLVC1_HUMAN	feline leukemia virus subgroup C cellular	232					cell death|cellular iron ion homeostasis|heme export|transmembrane transport	integral to plasma membrane	heme transporter activity|protein binding|receptor activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.00733)|all cancers(67;0.013)|GBM - Glioblastoma multiforme(131;0.0845)|Epithelial(68;0.11)		TTTGGGCCCAAAGAGGTGTCC	0.562													20	59					0	0	0.00229938	0	0
SUSD4	55061	broad.mit.edu	37	1	223438040	223438040	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:223438040G>T	uc001hnx.2	-	4	1290	c.656C>A	c.(655-657)TCT>TAT	p.S219Y	SUSD4_uc001hny.3_Missense_Mutation_p.S219Y|SUSD4_uc010puw.1_Missense_Mutation_p.S59Y|SUSD4_uc001hnz.2_Missense_Mutation_p.S219Y|SUSD4_uc010pux.1_Missense_Mutation_p.S148Y	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	219	Sushi 3.|Extracellular (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		AAGATACGCAGACCCATCAAG	0.488													57	53					4.45325e-31	1.61287e-30	0.000781405	1	0
TP53BP2	7159	broad.mit.edu	37	1	223986192	223986192	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:223986192C>T	uc010pvb.1	-	12	1965	c.1673G>A	c.(1672-1674)AGA>AAA	p.R558K	TP53BP2_uc001hod.2_Missense_Mutation_p.R429K|TP53BP2_uc010puz.1_Intron|TP53BP2_uc010pva.1_Missense_Mutation_p.R197K	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	552					apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		TAGCAGCACTCTCGGCTGCTG	0.542													80	164					0	0	0.000781405	0	0
OBSCN	84033	broad.mit.edu	37	1	228476516	228476516	+	Silent	SNP	G	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:228476516G>T	uc009xez.1	+	38	10310	c.10266G>T	c.(10264-10266)CTG>CTT	p.L3422L	OBSCN_uc001hsn.2_Silent_p.L3422L|OBSCN_uc001hsq.1_Silent_p.L678L	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3422	Ig-like 34.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TCTGTGGCCTGGCTGTGGCAG	0.627													24	39					3.7963e-18	1.3671e-17	0.00047179	1	0
FMN2	56776	broad.mit.edu	37	1	240341256	240341256	+	Silent	SNP	A	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr1:240341256A>G	uc010pyd.1	+	3	2043	c.1818A>G	c.(1816-1818)CAA>CAG	p.Q606Q	FMN2_uc010pye.1_Silent_p.Q606Q	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	606					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CAGTTAGTCAACCCACACACT	0.418													16	6					0	0	0.000566183	0	0
NET1	10276	broad.mit.edu	37	10	5494349	5494349	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr10:5494349C>T	uc001iia.2	+	5	530	c.392C>T	c.(391-393)TCC>TTC	p.S131F	NET1_uc010qar.1_5'UTR|NET1_uc001iib.2_Missense_Mutation_p.S77F|NET1_uc010qas.1_5'UTR	NM_001047160	NP_001040625	Q7Z628	ARHG8_HUMAN	neuroepithelial cell transforming gene 1 isoform	131					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell growth|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|nucleus	Rho guanyl-nucleotide exchange factor activity			breast(1)	1						GACCACAGATCCCCAGCCTCT	0.433													15	2					0	0	0.00074312	0	0
CUBN	8029	broad.mit.edu	37	10	16967390	16967390	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr10:16967390A>C	uc001ioo.2	-	43	6548	c.6496T>G	c.(6496-6498)TTG>GTG	p.L2166V		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	2166	CUB 15.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GGGGGTCCCAAGGGTGGAGAA	0.388													25	3					0	0	0.000720815	0	0
PPA1	5464	broad.mit.edu	37	10	71990114	71990114	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr10:71990114G>A	uc001jqv.1	-	2	213	c.106C>T	c.(106-108)CCA>TCA	p.P36S		NM_021129	NP_066952	Q15181	IPYR_HUMAN	pyrophosphatase 1	36					diphosphate metabolic process|tRNA aminoacylation for protein translation	cytosol	inorganic diphosphatase activity|magnesium ion binding			breast(1)	1						GCATAAATTGGAATATCATGA	0.299													23	2					0	0	0.000878237	0	0
PTEN	5728	broad.mit.edu	37	10	89692839	89692839	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr10:89692839T>C	uc001kfb.2	+	6	1354	c.323T>C	c.(322-324)CTT>CCT	p.L108P		NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	108	Phosphatase tensin-type.				activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.R55fs*1(4)|p.L108R(3)|p.Y27_N212>Y(2)|p.?(2)|p.Y27fs*1(2)|p.L108_D109del(2)|p.F56fs*2(1)|p.L108P(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		TGTGAAGATCTTGACCAATGG	0.373		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			56	6					0	0	0.000781405	0	0
PLCE1	51196	broad.mit.edu	37	10	96028694	96028694	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr10:96028694G>A	uc001kjk.2	+	17	4924	c.4290G>A	c.(4288-4290)TTG>TTA	p.L1430L	PLCE1_uc010qnx.1_Silent_p.L1414L|PLCE1_uc001kjm.2_Silent_p.L1122L	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1430	PI-PLC X-box.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AGGTCCTTTTGCAAGGCTGTC	0.498													19	35					0	0	0.00121646	0	0
TACC2	10579	broad.mit.edu	37	10	123997041	123997041	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr10:123997041C>T	uc001lfv.2	+	17	8619	c.8259C>T	c.(8257-8259)ATC>ATT	p.I2753I	TACC2_uc001lfw.2_Silent_p.I899I|TACC2_uc009xzx.2_Silent_p.I2631I|TACC2_uc010qtv.1_Silent_p.I2680I|TACC2_uc001lfx.2_Silent_p.I380I|TACC2_uc001lfy.2_Silent_p.I376I|TACC2_uc001lfz.2_Silent_p.I831I|TACC2_uc001lga.2_Silent_p.I801I|TACC2_uc009xzy.2_Silent_p.I813I|TACC2_uc001lgb.2_Silent_p.I711I	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2753	Potential.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CCCTCCAGATCGCCAGAGCAG	0.547													19	13					0	0	0.00229938	0	0
KNDC1	85442	broad.mit.edu	37	10	135000066	135000066	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr10:135000066C>T	uc001llz.1	+	6	1215	c.1214C>T	c.(1213-1215)CCA>CTA	p.P405L	KNDC1_uc001lma.1_Missense_Mutation_p.P340L	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	405					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		AGCCAGGGGCCAGCAGAGGCC	0.662													11	29					0	0	0.000978159	0	0
LOC653544	653544	broad.mit.edu	37	10	135491112	135491112	+	Missense_Mutation	SNP	C	A	A	rs141602288	by1000genomes	TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr10:135491112C>A	uc010qvi.1	+	1	834	c.723C>A	c.(721-723)TTC>TTA	p.F241L		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	241						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGGTCGCCTTCGCCCACACCG	0.776													4	19					0.00198382	0.00688886	0.00198382	1	0
OR6A2	8590	broad.mit.edu	37	11	6816642	6816642	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:6816642C>T	uc001mes.1	-	1	498	c.298G>A	c.(298-300)GAG>AAG	p.E100K		NM_003696	NP_003687	O95222	OR6A2_HUMAN	olfactory receptor, family 6, subfamily A,	100	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		ATGCATCCCTCAAAGGAGATT	0.473													25	39					0	0	0.000720815	0	0
ZNF215	7762	broad.mit.edu	37	11	6977392	6977392	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:6977392T>C	uc001mey.2	+	7	1772	c.1184T>C	c.(1183-1185)ATT>ACT	p.I395T	ZNF215_uc010raw.1_3'UTR|ZNF215_uc010rax.1_Missense_Mutation_p.I157T|ZNF215_uc001mez.1_Intron	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	395	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		TCATCCCTTATTCGACATCAG	0.383													34	41					0	0	0.000814825	0	0
TMEM41B	440026	broad.mit.edu	37	11	9310040	9310040	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:9310040T>C	uc001mhm.2	-	4	719	c.411A>G	c.(409-411)ATA>ATG	p.I137M	TMEM41B_uc001mhn.1_Missense_Mutation_p.I137M	NM_015012	NP_055827	Q5BJD5	TM41B_HUMAN	transmembrane protein 41B isoform 1	137						integral to membrane					0				all cancers(16;9.96e-08)|Epithelial(150;4.89e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0972)		ACCCTGAGAGTATACTGAGAA	0.294													34	32					0	0	0.000953801	0	0
DGKZ	8525	broad.mit.edu	37	11	46393075	46393075	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:46393075C>T	uc001ncn.1	+	9	1370	c.1245C>T	c.(1243-1245)ATC>ATT	p.I415I	DGKZ_uc001nch.1_Silent_p.I243I|DGKZ_uc010rgq.1_Silent_p.I170I|DGKZ_uc001ncj.1_Silent_p.I193I|DGKZ_uc010rgr.1_Silent_p.I192I|DGKZ_uc001nck.1_Silent_p.I5I|DGKZ_uc001ncl.2_Silent_p.I227I|DGKZ_uc001ncm.2_Silent_p.I226I|DGKZ_uc009yky.1_Silent_p.I227I|DGKZ_uc010rgs.1_Silent_p.I204I	NM_001105540	NP_001099010	Q13574	DGKZ_HUMAN	diacylglycerol kinase zeta isoform 4	415	Phorbol-ester/DAG-type 2.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell migration|intracellular signal transduction|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of mitotic cell cycle|platelet activation	cytoplasm|lamellipodium|nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|diacylglycerol kinase activity|lipid kinase activity|metal ion binding|protein binding|protein C-terminus binding			pancreas(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(35;0.0259)|Lung(87;0.141)		TGCAGCAGATCGAGGAGCCGT	0.677													14	16					0	0	0.00185496	0	0
OR4X1	390113	broad.mit.edu	37	11	48286316	48286316	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:48286316G>A	uc010rht.1	+	1	904	c.904G>A	c.(904-906)GGA>AGA	p.G302R		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						ATTTATTGGGGGAAAAGTAAT	0.269													14	24					0	0	0.00185496	0	0
OR4C3	256144	broad.mit.edu	37	11	48347057	48347057	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:48347057C>T	uc010rhv.1	+	1	565	c.565C>T	c.(565-567)CTT>TTT	p.L189F		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CCTCCTGGTCCTTTGGTTGCC	0.517													8	96					0	0	0.00188189	0	0
AHNAK	79026	broad.mit.edu	37	11	62300587	62300587	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:62300587C>T	uc001ntl.2	-	5	1602	c.1302G>A	c.(1300-1302)ATG>ATA	p.M434I	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	434					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TGGGGACTTTCATCTTGGGCA	0.542													30	30					0	0	0.00209593	0	0
SLC22A9	114571	broad.mit.edu	37	11	63141223	63141223	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:63141223T>C	uc001nww.2	+	3	882	c.614T>C	c.(613-615)TTG>TCG	p.L205S	SLC22A9_uc001nwx.2_Intron	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	205	Helical; (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						CTACGCTTCTTGTCTGGGATT	0.443													59	79					0	0	0.000781405	0	0
CCDC85B	11007	broad.mit.edu	37	11	65658858	65658858	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:65658858G>T	uc001ogf.2	+	1	984	c.604G>T	c.(604-606)GAT>TAT	p.D202Y	FIBP_uc009yqu.2_5'Flank|FIBP_uc001ogd.2_5'Flank|FIBP_uc001oge.2_5'Flank|FIBP_uc010roq.1_5'Flank|FIBP_uc010ror.1_5'Flank	NM_006848	NP_006839	Q15834	CC85B_HUMAN	hepatitis delta antigen-interacting protein A	202					cell differentiation|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	protein binding				0				READ - Rectum adenocarcinoma(159;0.166)		TTCCCCCGATGATTGAAGGCA	0.711													4	7					3.59834e-05	0.000126694	0.00116845	1	0
NPAS4	266743	broad.mit.edu	37	11	66191075	66191075	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:66191075G>A	uc001ohx.1	+	6	1011	c.835G>A	c.(835-837)GAG>AAG	p.E279K	NPAS4_uc010rpc.1_Missense_Mutation_p.E69K	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	279	PAC.				transcription, DNA-dependent		DNA binding|signal transducer activity				0						TATTCAGGCAGAGATGGTGGT	0.517													36	37					0	0	0.00128727	0	0
ALDH3B1	221	broad.mit.edu	37	11	67790121	67790121	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:67790121C>G	uc010rpy.1	+	10	1124	c.1008C>G	c.(1006-1008)TTC>TTG	p.F336L	ALDH3B1_uc001omz.2_Missense_Mutation_p.F336L|ALDH3B1_uc001ona.2_Missense_Mutation_p.F299L|ALDH3B1_uc001onb.2_RNA	NM_001161473	NP_001154945	P43353	AL3B1_HUMAN	aldehyde dehydrogenase 3B1 isoform a	336					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase				0					NADH(DB00157)	AGGAGATCTTCGGGCCCATCC	0.632													41	31					0	0	0.000781405	0	0
FAT3	120114	broad.mit.edu	37	11	92615911	92615911	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:92615911G>A	uc001pdj.3	+	23	12306	c.12289G>A	c.(12289-12291)GAG>AAG	p.E4097K	FAT3_uc001pdi.3_Missense_Mutation_p.E537K	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4097	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CAGGTGTGAGGAGGACATCAA	0.572										TCGA Ovarian(4;0.039)			82	116					0	0	0.000781405	0	0
SLC36A4	120103	broad.mit.edu	37	11	92916041	92916041	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:92916041A>G	uc001pdn.2	-	4	387	c.290T>C	c.(289-291)GTG>GCG	p.V97A	SLC36A4_uc001pdm.2_5'UTR	NM_152313	NP_689526	Q6YBV0	S36A4_HUMAN	solute carrier family 36 (proton/amino acid	97	Helical; (Potential).				L-alanine transport|proline transport|tryptophan transport	integral to membrane	symporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				TCCTATAAACACAAGGCTGAT	0.308													173	216					0	0	0.000781405	0	0
CWF19L2	143884	broad.mit.edu	37	11	107260890	107260890	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:107260890A>C	uc010rvp.1	-	12	1812	c.1782T>G	c.(1780-1782)GAT>GAG	p.D594E	CWF19L2_uc001pjh.3_RNA|CWF19L2_uc009yxo.2_RNA	NM_152434	NP_689647	Q2TBE0	C19L2_HUMAN	CWF19-like 2, cell cycle control	594							catalytic activity				0		Melanoma(852;1.75e-05)|all_epithelial(67;6.27e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0258)		Epithelial(105;7.18e-06)|BRCA - Breast invasive adenocarcinoma(274;1.65e-05)|all cancers(92;1.76e-05)		TTAGATTATCATCATCATGAA	0.313													17	34					0	0	0.00074312	0	0
ZC3H12C	85463	broad.mit.edu	37	11	110035104	110035104	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:110035104C>T	uc009yxw.2	+	6	1345	c.1294C>T	c.(1294-1296)CAT>TAT	p.H432Y	ZC3H12C_uc010rwc.1_Missense_Mutation_p.H433Y|ZC3H12C_uc010rwd.1_Missense_Mutation_p.H433Y|ZC3H12C_uc001pkr.3_Missense_Mutation_p.H401Y	NM_033390	NP_203748	Q9C0D7	ZC12C_HUMAN	zinc finger CCCH-type containing 12C	432	C3H1-type.						endonuclease activity|nucleic acid binding|zinc ion binding				0		all_cancers(61;3.24e-13)|all_epithelial(67;1.27e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.72e-06)|BRCA - Breast invasive adenocarcinoma(274;1.17e-05)|all cancers(92;9e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0279)		CAAATATTACCATCCCGAAAG	0.458													7	18					0	0	0.000157383	0	0
SORL1	6653	broad.mit.edu	37	11	121448004	121448004	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:121448004C>T	uc001pxx.2	+	25	3555	c.3475C>T	c.(3475-3477)CGG>TGG	p.R1159W	SORL1_uc010rzp.1_Missense_Mutation_p.R5W	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1159	Extracellular (Potential).|LDL-receptor class A 3.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GCACCAGTGCCGGAGTGACGA	0.517													21	42					0	0	0.00152264	0	0
IGSF9B	22997	broad.mit.edu	37	11	133790544	133790544	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr11:133790544G>A	uc001qgx.3	-	18	3307	c.3076C>T	c.(3076-3078)CCC>TCC	p.P1026S		NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	1026	Pro-rich.|Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		TGAGTCAAGGGCAGCGTGCTG	0.667													33	53					0	0	0.00170553	0	0
CACNA1C	775	broad.mit.edu	37	12	2602424	2602424	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:2602424G>A	uc009zdu.1	+	7	1298	c.985G>A	c.(985-987)GGC>AGC	p.G329S	CACNA1C_uc009zdv.1_Missense_Mutation_p.G326S|CACNA1C_uc001qkb.2_Missense_Mutation_p.G329S|CACNA1C_uc001qkc.2_Missense_Mutation_p.G329S|CACNA1C_uc001qke.2_Missense_Mutation_p.G329S|CACNA1C_uc001qkf.2_Missense_Mutation_p.G329S|CACNA1C_uc001qjz.2_Missense_Mutation_p.G329S|CACNA1C_uc001qkd.2_Missense_Mutation_p.G329S|CACNA1C_uc001qkg.2_Missense_Mutation_p.G329S|CACNA1C_uc009zdw.1_Missense_Mutation_p.G329S|CACNA1C_uc001qkh.2_Missense_Mutation_p.G329S|CACNA1C_uc001qkl.2_Missense_Mutation_p.G329S|CACNA1C_uc001qkn.2_Missense_Mutation_p.G329S|CACNA1C_uc001qko.2_Missense_Mutation_p.G329S|CACNA1C_uc001qkp.2_Missense_Mutation_p.G329S|CACNA1C_uc001qkr.2_Missense_Mutation_p.G329S|CACNA1C_uc001qku.2_Missense_Mutation_p.G329S|CACNA1C_uc001qkq.2_Missense_Mutation_p.G329S|CACNA1C_uc001qks.2_Missense_Mutation_p.G329S|CACNA1C_uc001qkt.2_Missense_Mutation_p.G329S|CACNA1C_uc001qka.1_5'UTR|CACNA1C_uc001qki.1_Missense_Mutation_p.G65S|CACNA1C_uc001qkj.1_Missense_Mutation_p.G65S|CACNA1C_uc001qkk.1_Missense_Mutation_p.G65S|CACNA1C_uc001qkm.1_Missense_Mutation_p.G65S	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	329	I.|Extracellular (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GTGCCAGAACGGCACGGTGTG	0.587													27	77					0	0	0.001512	0	0
KCNA6	3742	broad.mit.edu	37	12	4920364	4920364	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:4920364G>C	uc001qng.2	+	1	2023	c.1157G>C	c.(1156-1158)GGG>GCG	p.G386A		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	386	Helical; Name=Segment S5; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						CTCTTCATCGGGGTCATCCTC	0.582										HNSCC(72;0.22)			3	37					0	0	0.00024832	0	0
VWF	7450	broad.mit.edu	37	12	6173510	6173510	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:6173510G>A	uc001qnn.1	-	12	1584	c.1334C>T	c.(1333-1335)ACC>ATC	p.T445I	VWF_uc010set.1_Missense_Mutation_p.T445I	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	445	VWFD 2.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CAGCCGGACGGTGACGGAGCG	0.632													12	11					0	0	0.00244969	0	0
PZP	5858	broad.mit.edu	37	12	9360928	9360928	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:9360928C>T	uc001qvl.2	-	1	39	c.10G>A	c.(10-12)GAC>AAC	p.D4N	PZP_uc009zgl.2_5'UTR	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						AGAAGTCTGTCTTTCCGCATT	0.493													9	13					0	0	0.000274275	0	0
DERA	51071	broad.mit.edu	37	12	16185524	16185524	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:16185524C>T	uc001rde.2	+	7	818	c.686C>T	c.(685-687)ACC>ATC	p.T229I	DERA_uc010shx.1_Missense_Mutation_p.T141I	NM_015954	NP_057038	Q9Y315	DEOC_HUMAN	deoxyribose-phosphate aldolase-like	229					deoxyribonucleoside catabolic process|deoxyribonucleotide catabolic process	cytoplasm	deoxyribose-phosphate aldolase activity|protein binding				0		Hepatocellular(102;0.121)				GTAAATGCCACCTTCCCGGTA	0.343													5	4					0	0	0.000157383	0	0
PRPF40B	25766	broad.mit.edu	37	12	50036041	50036041	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:50036041G>A	uc001rur.1	+	19	1906	c.1842G>A	c.(1840-1842)CGG>CGA	p.R614R	FMNL3_uc001ruv.1_3'UTR|FMNL3_uc001ruw.1_3'UTR|PRPF40B_uc001rup.1_Silent_p.R636R|PRPF40B_uc001ruq.1_Silent_p.R601R|PRPF40B_uc001rus.1_Silent_p.R557R|FMNL3_uc001rut.1_3'UTR|FMNL3_uc001ruu.1_3'UTR	NM_001031698	NP_001026868	Q6NWY9	PR40B_HUMAN	Huntingtin interacting protein C isoform 1	614					mRNA processing|RNA splicing	nuclear speck				skin(2)|ovary(1)|pancreas(1)|kidney(1)	5						CAGAGGCACGGGAGAGGGAGC	0.627													25	55					0	0	0.000586117	0	0
KRT75	9119	broad.mit.edu	37	12	52827866	52827866	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:52827866C>G	uc001saj.2	-	1	245	c.223G>C	c.(223-225)GGG>CGG	p.G75R		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	75	Gly-rich.|Head.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		CTGCCACACCCATTGATGGAG	0.617													3	55					0	0	0.00024832	0	0
KRT4	3851	broad.mit.edu	37	12	53207774	53207774	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:53207774G>A	uc001saz.2	-	1	562	c.291C>T	c.(289-291)GGC>GGT	p.G97G		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	23						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						TCTTGCCACCGCCTACAATGG	0.617													32	34					0	0	0.00283554	0	0
KIAA0748	9840	broad.mit.edu	37	12	55356885	55356885	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:55356885G>A	uc001sgn.3	-	9	907	c.797C>T	c.(796-798)TCC>TTC	p.S266F	KIAA0748_uc001sgl.3_Missense_Mutation_p.S128F|KIAA0748_uc001sgm.3_Missense_Mutation_p.S13F|KIAA0748_uc010spb.1_Missense_Mutation_p.S13F|KIAA0748_uc010spc.1_Missense_Mutation_p.S128F|KIAA0748_uc010spd.1_Missense_Mutation_p.S266F|KIAA0748_uc001sgo.3_RNA	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	266										ovary(1)|central_nervous_system(1)	2						AATCCTGATGGATGGCACATC	0.527													11	19					0	0	0.00185496	0	0
GPR182	11318	broad.mit.edu	37	12	57389082	57389082	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:57389082C>T	uc001smk.2	+	2	183	c.89C>T	c.(88-90)ACC>ATC	p.T30I	RDH16_uc010sqx.1_Intron	NM_007264	NP_009195	O15218	GP182_HUMAN	G protein-coupled receptor 182	30	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(1)	1						CACAACTGGACCGAGCTGCTT	0.612													33	39					0	0	0.000814825	0	0
HELB	92797	broad.mit.edu	37	12	66725086	66725086	+	Silent	SNP	T	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:66725086T>C	uc001sti.2	+	12	2851	c.2823T>C	c.(2821-2823)TTT>TTC	p.F941F	HELB_uc010ssz.1_RNA|HELB_uc009zqt.1_RNA	NM_033647	NP_387467	Q8NG08	HELB_HUMAN	helicase (DNA) B	941					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		AAAACAGTTTTCCTAGAAAAA	0.517													30	19					0	0	0.00209593	0	0
ANO4	121601	broad.mit.edu	37	12	101520688	101520688	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:101520688C>T	uc010svm.1	+	27	3280	c.2708C>T	c.(2707-2709)TCA>TTA	p.S903L	ANO4_uc001thw.2_Missense_Mutation_p.S868L|ANO4_uc001thx.2_Missense_Mutation_p.S903L|ANO4_uc001thy.2_Missense_Mutation_p.S423L	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	903	Helical; (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						CACCTCATTTCATATCTGATC	0.443										HNSCC(74;0.22)			9	18					0	0	0.000274275	0	0
NT5DC3	51559	broad.mit.edu	37	12	104192412	104192412	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:104192412C>T	uc010swe.1	-	5	609	c.568G>A	c.(568-570)GAG>AAG	p.E190K		NM_001031701	NP_001026871	Q86UY8	NT5D3_HUMAN	5'-nucleotidase domain containing 3	190							hydrolase activity|metal ion binding			ovary(2)|skin(1)	3						TGGGACCCCTCGTACATTTCA	0.423													17	49					0	0	0.00229938	0	0
CHST11	50515	broad.mit.edu	37	12	105150791	105150791	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:105150791G>A	uc001tkx.1	+	4	560	c.269G>A	c.(268-270)CGA>CAA	p.R90Q	CHST11_uc001tky.2_Missense_Mutation_p.R85Q|uc001tkz.2_5'Flank	NM_018413	NP_060883	Q9NPF2	CHSTB_HUMAN	carbohydrate sulfotransferase 11	90	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 4-sulfotransferase activity|N-acetylgalactosamine 4-O-sulfotransferase activity				0						GACACGTGCCGAGCCAACAGC	0.582													21	12					0	0	0.00229938	0	0
NUAK1	9891	broad.mit.edu	37	12	106461156	106461156	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:106461156C>T	uc001tlj.1	-	7	2790	c.1410G>A	c.(1408-1410)AAG>AAA	p.K470K		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	470							ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						TCTGCTGGGTCTTTTTCAAGA	0.572													25	18					0	0	0.000586117	0	0
TMEM119	338773	broad.mit.edu	37	12	108985408	108985408	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:108985408C>T	uc001tng.2	-	2	915	c.752G>A	c.(751-753)GGG>GAG	p.G251E	TMEM119_uc001tnf.2_RNA	NM_181724	NP_859075	Q4V9L6	TM119_HUMAN	transmembrane protein 119 precursor	251	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						TTCCAGCTCCCCTTGGCCCTC	0.652													46	88					0	0	0.000781405	0	0
ALKBH2	121642	broad.mit.edu	37	12	109527892	109527892	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:109527892C>T	uc001tnx.2	-	3	794	c.401G>A	c.(400-402)TGG>TAG	p.W134*	ALKBH2_uc001tny.2_Nonsense_Mutation_p.W134*|ALKBH2_uc010sxj.1_Nonsense_Mutation_p.W134*|ALKBH2_uc009zvd.2_Intron|ALKBH2_uc010sxk.1_Intron	NM_001145374	NP_001138846	Q6NS38	ALKB2_HUMAN	AlkB homolog 2	134					DNA dealkylation involved in DNA repair|oxidative DNA demethylation	nucleoplasm	cytosine C-5 DNA demethylase activity|damaged DNA binding|DNA-N1-methyladenine dioxygenase activity|ferrous iron binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0					Vitamin C(DB00126)	AACTGGGATCCAGGGCTTTGG	0.557								Direct_reversal_of_damage					22	42					0	0	0.00152264	0	0
UBE3B	89910	broad.mit.edu	37	12	109954637	109954637	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:109954637C>T	uc001top.2	+	19	2627	c.2024C>T	c.(2023-2025)TCT>TTT	p.S675F	UBE3B_uc001toq.2_Missense_Mutation_p.S675F|UBE3B_uc001tos.2_Missense_Mutation_p.S102F|UBE3B_uc001too.1_RNA|UBE3B_uc009zvj.1_Missense_Mutation_p.S675F	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	675					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						GAAACCAGCTCTGCCTCCCCG	0.532													36	20					0	0	0.000814825	0	0
OAS3	4940	broad.mit.edu	37	12	113398967	113398967	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:113398967C>T	uc001tug.2	+	8	1836	c.1749C>T	c.(1747-1749)TTC>TTT	p.F583F		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	583	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						AGGCCTGCTTCGCAGAGCTGC	0.582													12	16					0	0	0.00185496	0	0
ZMYM2	7750	broad.mit.edu	37	13	20641482	20641482	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr13:20641482G>T	uc001umr.2	+	22	3703	c.3405G>T	c.(3403-3405)GAG>GAT	p.E1135D	ZMYM2_uc001ums.2_Missense_Mutation_p.E1135D|ZMYM2_uc001umt.2_Missense_Mutation_p.E1135D|ZMYM2_uc001umv.2_Missense_Mutation_p.E515D|ZMYM2_uc001umw.2_Missense_Mutation_p.E588D	NM_003453	NP_003444	Q9UBW7	ZMYM2_HUMAN	zinc finger protein 198	1135					regulation of transcription, DNA-dependent|transcription, DNA-dependent	PML body	ubiquitin conjugating enzyme binding|zinc ion binding			lung(3)|ovary(2)|prostate(1)	6		all_cancers(29;8.65e-21)|all_epithelial(30;1.04e-18)|all_lung(29;6.75e-18)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;0.000148)|Epithelial(112;0.000249)|OV - Ovarian serous cystadenocarcinoma(117;0.00816)|Lung(94;0.0173)|LUSC - Lung squamous cell carcinoma(192;0.0856)		CAAATGGAGAGAATTATGCAC	0.388													7	12					8.12818e-05	0.00028539	0.00198382	1	0
GJB6	10804	broad.mit.edu	37	13	20796916	20796916	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr13:20796916G>A	uc001umz.3	-	3	1257	c.704C>T	c.(703-705)GCC>GTC	p.A235V	GJB6_uc001unc.3_Missense_Mutation_p.A235V|GJB6_uc001una.3_Missense_Mutation_p.A235V|GJB6_uc001und.3_Missense_Mutation_p.A235V|GJB6_uc001unb.3_Missense_Mutation_p.A235V	NM_006783	NP_006774	O95452	CXB6_HUMAN	gap junction protein, beta 6	235	Cytoplasmic (Potential).				cell communication|sensory perception of sound	connexon complex|integral to membrane|intracellular membrane-bounded organelle				ovary(1)	1		all_cancers(29;2.04e-22)|all_epithelial(30;1.19e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;2.17e-05)|Epithelial(112;0.00075)|OV - Ovarian serous cystadenocarcinoma(117;0.00978)|Lung(94;0.0238)|GBM - Glioblastoma multiforme(144;0.0323)|LUSC - Lung squamous cell carcinoma(192;0.0744)		CTCCTTTAGGGCATGATTGGG	0.418													36	59					0	0	0.000692331	0	0
USPL1	10208	broad.mit.edu	37	13	31232917	31232917	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr13:31232917G>A	uc001utc.2	+	9	3135	c.2703G>A	c.(2701-2703)AAG>AAA	p.K901K	USPL1_uc001utd.2_Silent_p.K572K|USPL1_uc001ute.1_Silent_p.K572K	NM_005800	NP_005791	Q5W0Q7	USPL1_HUMAN	ubiquitin specific peptidase like 1	901					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			pancreas(2)|skin(1)	3		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0306)|Epithelial(112;0.131)|OV - Ovarian serous cystadenocarcinoma(117;0.134)		CAGAAAAGAAGAAATTAGCTG	0.408													10	36					0	0	0.000442599	0	0
FRY	10129	broad.mit.edu	37	13	32813472	32813472	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr13:32813472G>A	uc001utx.2	+	45	6998	c.6502G>A	c.(6502-6504)GAA>AAA	p.E2168K	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2168					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		GGATATAGCCGAAAGGATTGC	0.463													41	34					0	0	0.00170553	0	0
COG6	57511	broad.mit.edu	37	13	40251631	40251631	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr13:40251631T>C	uc001uxh.2	+	5	555	c.455T>C	c.(454-456)GTT>GCT	p.V152A	COG6_uc001uxi.2_Missense_Mutation_p.V100A|COG6_uc010acb.2_Missense_Mutation_p.V152A	NM_020751	NP_065802	Q9Y2V7	COG6_HUMAN	component of oligomeric golgi complex 6 isoform	152					protein transport	Golgi membrane|Golgi transport complex				kidney(1)|skin(1)	2		Lung NSC(96;0.000124)|Breast(139;0.0199)|Prostate(109;0.0233)|Lung SC(185;0.0367)		all cancers(112;6.03e-09)|Epithelial(112;7e-07)|OV - Ovarian serous cystadenocarcinoma(117;0.00015)|BRCA - Breast invasive adenocarcinoma(63;0.00438)|GBM - Glioblastoma multiforme(144;0.0168)		AGAGCTCAAGTTGCAGATGCC	0.373													16	29					0	0	0.000308642	0	0
SLITRK6	84189	broad.mit.edu	37	13	86369000	86369000	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr13:86369000G>A	uc001vll.1	-	2	2103	c.1644C>T	c.(1642-1644)TCC>TCT	p.S548S	SLITRK6_uc010afe.1_Intron	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	548	LRRCT 2.|Extracellular (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		GATGCCCGGGGGAAGTGCAGA	0.463													36	24					0	0	0.000814825	0	0
ZIC2	7546	broad.mit.edu	37	13	100635129	100635129	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr13:100635129A>C	uc001von.2	+	1	811	c.811A>C	c.(811-813)AAG>CAG	p.K271Q		NM_007129	NP_009060	O95409	ZIC2_HUMAN	zinc finger protein of the cerebellum 2	271	C2H2-type 1; atypical.				brain development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|visual perception	cytoplasm|nucleus	chromatin DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CAATCCCAAGAAGAGCTGCAA	0.552													20	61					0	0	0.00278032	0	0
C13orf27	93081	broad.mit.edu	37	13	103419826	103419826	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr13:103419826G>A	uc001vpo.2	-	5	479	c.301C>T	c.(301-303)CGT>TGT	p.R101C	C13orf27_uc001vpn.2_Missense_Mutation_p.R60C|C13orf27_uc001vpp.2_Missense_Mutation_p.R60C	NM_138779	NP_620134	Q5JUR7	CM027_HUMAN	hypothetical protein LOC93081	101											0	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CCCATTGAACGACCTAAAATC	0.363													17	6					0	0	0.000958276	0	0
GRTP1	79774	broad.mit.edu	37	13	113999256	113999256	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr13:113999256C>T	uc001vtn.2	-	5	581	c.484G>A	c.(484-486)GGA>AGA	p.G162R	GRTP1_uc010tkb.1_Missense_Mutation_p.G84R|GRTP1_uc010tkc.1_Missense_Mutation_p.G162R	NM_024719	NP_078995	Q5TC63	GRTP1_HUMAN	growth hormone regulated TBC protein 1	162	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0314)|all_epithelial(44;0.011)|all_lung(25;0.0271)|Lung NSC(25;0.0978)|Breast(118;0.188)	all cancers(43;0.025)|GBM - Glioblastoma multiforme(44;0.206)|Epithelial(84;0.246)			ATCAGATATCCTGCTATAAAA	0.338													40	32					0	0	0.00148497	0	0
OR4M1	441670	broad.mit.edu	37	14	20248980	20248980	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr14:20248980C>T	uc010tku.1	+	1	499	c.499C>T	c.(499-501)CCT>TCT	p.P167S		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGTTCGACTTCCTTTCTGTGG	0.488													86	163					0	0	0.000781405	0	0
OR4K1	79544	broad.mit.edu	37	14	20403845	20403845	+	Missense_Mutation	SNP	C	T	T	rs146809169		TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr14:20403845C>T	uc001vwj.1	+	1	20	c.20C>T	c.(19-21)TCG>TTG	p.S7L		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		ACAAATGAATCGATGGTGTCT	0.348													46	282					0	0	0.000781405	0	0
CMTM5	116173	broad.mit.edu	37	14	23847927	23847927	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr14:23847927C>T	uc010akm.2	+	3	773	c.329C>T	c.(328-330)TCC>TTC	p.S110F	CMTM5_uc001wjs.2_Intron|CMTM5_uc001wjt.2_Intron|CMTM5_uc010akn.2_Intron|CMTM5_uc001wju.2_Intron|CMTM5_uc010ako.2_Intron	NM_138460	NP_612469	Q96DZ9	CKLF5_HUMAN	chemokine-like factor superfamily 5 isoform a	110	MARVEL.				chemotaxis	extracellular space|integral to membrane	cytokine activity				0	all_cancers(95;2e-05)			GBM - Glioblastoma multiforme(265;0.0064)|READ - Rectum adenocarcinoma(4;0.0276)|Colorectal(4;0.0382)		GATCTACTCTCCCACTCAGCA	0.627													8	22					0	0	0.000157383	0	0
TINF2	26277	broad.mit.edu	37	14	24709293	24709293	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr14:24709293C>T	uc001woa.3	-	8	1540	c.1198G>A	c.(1198-1200)GAA>AAA	p.E400K	TINF2_uc010alm.2_3'UTR|TINF2_uc001wob.3_3'UTR|TINF2_uc010tof.1_Missense_Mutation_p.E365K|TINF2_uc001woc.3_3'UTR	NM_001099274	NP_001092744	Q9BSI4	TINF2_HUMAN	TERF1 (TRF1)-interacting nuclear factor 2	400					negative regulation of epithelial cell proliferation|negative regulation of protein ADP-ribosylation|negative regulation of telomere maintenance via telomerase|positive regulation of telomere maintenance|protein localization to chromosome, telomeric region|telomere assembly|telomere maintenance via telomere lengthening	nuclear telomere cap complex|nucleoplasm|perinucleolar chromocenter	protein binding|protein binding|telomeric DNA binding				0				GBM - Glioblastoma multiforme(265;0.0185)		TGGCCATTTTCTTCCTCATCA	0.488									Ataxia_Pancytopenia_syndrome|Congenital_Dyskeratosis				57	185					0	0	0.000781405	0	0
ADAM20	8748	broad.mit.edu	37	14	70990899	70990899	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr14:70990899G>A	uc001xme.2	-	2	971	c.726C>T	c.(724-726)TTC>TTT	p.F242F		NM_003814	NP_003805	O43506	ADA20_HUMAN	ADAM metallopeptidase domain 20 preproprotein	192					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.133)|Kidney(31;0.188)	all cancers(60;0.00294)|BRCA - Breast invasive adenocarcinoma(234;0.00668)|OV - Ovarian serous cystadenocarcinoma(108;0.0344)		GCTTCAGAGTGAAATTATATG	0.398													14	12					0	0	0.00185496	0	0
ISCA2	122961	broad.mit.edu	37	14	74961672	74961672	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr14:74961672C>T	uc001xpz.2	+	4	462	c.434C>T	c.(433-435)TCC>TTC	p.S145F	NPC2_uc001xpy.2_5'Flank|NPC2_uc010tus.1_5'Flank	NM_194279	NP_919255	Q86U28	ISCA2_HUMAN	iron-sulfur cluster assembly 2 precursor	145					iron-sulfur cluster assembly	mitochondrion	iron-sulfur cluster binding|metal ion binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00146)		CAAGGCTGCTCCTGTGGGTCA	0.463													41	42					0	0	0.00222228	0	0
EML5	161436	broad.mit.edu	37	14	89131701	89131701	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr14:89131701G>A	uc001xxg.2	-	23	3443	c.3257C>T	c.(3256-3258)TCA>TTA	p.S1086L	EML5_uc001xxf.2_5'UTR|EML5_uc001xxh.1_Missense_Mutation_p.S225L	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	1086	WD 18.					cytoplasm|microtubule				ovary(3)	3						TCGAATATCTGAAATCATATC	0.338													17	11					0	0	0.00074312	0	0
BDKRB1	623	broad.mit.edu	37	14	96730324	96730324	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr14:96730324A>G	uc001yfh.2	+	3	513	c.305A>G	c.(304-306)AAC>AGC	p.N102S	BDKRB1_uc010avn.2_Missense_Mutation_p.N102S	NM_000710	NP_000701	P46663	BKRB1_HUMAN	bradykinin receptor B1	102	Extracellular (Potential).				elevation of cytosolic calcium ion concentration	endoplasmic reticulum|integral to plasma membrane	bradykinin receptor activity			ovary(3)	3		all_cancers(154;0.0677)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.208)|Epithelial(152;0.226)		AACCAGTTTAACTGGCCTTTC	0.552													30	24					0	0	0.00209593	0	0
MIR409	574413	broad.mit.edu	37	14	101531680	101531680	+	RNA	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr14:101531680G>A	hsa-mir-409|MI0001735	+			c.44G>A			MIR412_hsa-mir-412|MI0002464_5'Flank|uc010txp.1_5'Flank|MIR369_hsa-mir-369|MI0000777_5'Flank|MIR410_hsa-mir-410|MI0002465_5'Flank|MIR656_hsa-mir-656|MI0003678_5'Flank																	0						GCATCTGGACGACGAATGTTG	0.592													21	29					0	0	0.00278032	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102452896	102452896	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr14:102452896C>T	uc001yks.2	+	8	2498	c.2334C>T	c.(2332-2334)GCC>GCT	p.A778A		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	778	Interaction with DYNC1LI2 (By similarity).|Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						ACCCGTTTGCCATCTCACTGA	0.517													48	35					0	0	0.000781405	0	0
AKT1	207	broad.mit.edu	37	14	105241328	105241329	+	Missense_Mutation	DNP	GG	AA	AA	rs139453090		TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr14:105241328_105241329GG>AA	uc001ypk.2	-	7	1133_1134	c.579_580CC>TT	c.(577-582)GCCCAC>GCTTAC	p.H194Y	INF2_uc010tyi.1_Intron|AKT1_uc001ypl.2_Missense_Mutation_p.H194Y|AKT1_uc010axa.2_Missense_Mutation_p.H194Y|AKT1_uc001ypm.2_Missense_Mutation_p.H194Y|AKT1_uc001ypn.2_Missense_Mutation_p.H194Y|AKT1_uc010tyk.1_Missense_Mutation_p.H132Y	NM_005163	NP_005154	P31749	AKT1_HUMAN	AKT1 kinase	194	Protein kinase.				activation of pro-apoptotic gene products|activation-induced cell death of T cells|endocrine pancreas development|G-protein coupled receptor protein signaling pathway|glucose metabolic process|glycogen biosynthetic process|induction of apoptosis by intracellular signals|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|mRNA metabolic process|negative regulation of fatty acid beta-oxidation|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|nitric oxide biosynthetic process|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of blood vessel endothelial cell migration|positive regulation of cell growth|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of establishment of protein localization in plasma membrane|positive regulation of fat cell differentiation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|positive regulation of nitric oxide biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein autophosphorylation|protein import into nucleus, translocation|regulation of neuron projection development|regulation of translation|response to fluid shear stress|response to heat|response to UV-A|T cell costimulation	cytosol|nucleoplasm|plasma membrane	enzyme binding|identical protein binding|nitric-oxide synthase regulator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein serine/threonine kinase activity			breast(86)|urinary_tract(12)|thyroid(10)|lung(7)|endometrium(5)|large_intestine(4)|skin(4)|prostate(3)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|NS(1)	134		all_cancers(154;3.77e-06)|all_lung(585;3.24e-07)|all_epithelial(191;3.45e-05)|all_neural(303;0.0459)|Melanoma(154;0.155)	all cancers(16;0.000486)|OV - Ovarian serous cystadenocarcinoma(23;0.00647)|Epithelial(46;0.0153)|GBM - Glioblastoma multiforme(11;0.116)	all cancers(159;0.0107)|OV - Ovarian serous cystadenocarcinoma(161;0.0132)|Epithelial(152;0.243)	Adenosine triphosphate(DB00171)|Arsenic trioxide(DB01169)	GTGAGTGTGTGGGCCACCTCGT	0.668		1	Mis		breast|colorectal|ovarian|NSCLC								23	13					0	0	6.4e-05	0	0
ADAM6	8755	broad.mit.edu	37	14	106110247	106110247	+	RNA	SNP	G	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr14:106110247G>T	uc010tyt.1	-	3642		c.61004C>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_RNA					Parts of antibodies, mostly variable regions.												0						CTTGGGTTTTGGGGGGAAGAG	0.617													10	32					7.03913e-09	2.49228e-08	0.00136819	1	0
LOC646214	646214	broad.mit.edu	37	15	21937005	21937005	+	RNA	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr15:21937005C>T	uc010tzj.1	-	1		c.3735G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						TCCTTCCATTCCCAAAAGTAC	0.473													22	67					0	0	0.00047179	0	0
HERC2	8924	broad.mit.edu	37	15	28366576	28366576	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr15:28366576C>T	uc001zbj.2	-	86	13295	c.13189_splice	c.e86-1	p.E4397_splice		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2						DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		AAGCCGCCTCCTAAAACACAT	0.438													25	24					0	0	0.00106085	0	0
RYR3	6263	broad.mit.edu	37	15	34080580	34080580	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr15:34080580A>C	uc001zhi.2	+	67	9821	c.9751A>C	c.(9751-9753)ATC>CTC	p.I3251L	RYR3_uc010bar.2_Missense_Mutation_p.I3251L	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3251					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		AGAACTCCTCATCCTGGACGA	0.552													45	65					0	0	0.000680045	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40293202	40293202	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr15:40293202C>T	uc001zkm.1	+	21	2986	c.2936C>T	c.(2935-2937)TCC>TTC	p.S979F	EIF2AK4_uc010bbj.1_Missense_Mutation_p.S680F|EIF2AK4_uc001zkn.1_Missense_Mutation_p.S79F|EIF2AK4_uc001zko.1_5'Flank	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	979	Protein kinase 2.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		TCAGTCATCTCCTGGCTGTTG	0.517													93	143					0	0	0.000781405	0	0
SERINC4	619189	broad.mit.edu	37	15	44087630	44087630	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr15:44087630G>A	uc010bds.1	-	8	1035	c.567C>T	c.(565-567)TTC>TTT	p.F189F	ELL3_uc001zsx.1_5'UTR|SERF2_uc010uee.1_3'UTR|C15orf63_uc001ztb.2_Intron|SERF2_uc001zsz.3_3'UTR|MIR1282_hsa-mir-1282|MI0006429_5'Flank|SERINC4_uc001ztc.1_RNA|SERINC4_uc001ztd.1_Missense_Mutation_p.S77F|SERINC4_uc001zte.1_Silent_p.F189F	NM_001033517	NP_001028689	A6NH21	SERC4_HUMAN	serine incorporator 4	433	Helical; (Potential).				phospholipid biosynthetic process	integral to membrane					0		all_cancers(109;3.26e-11)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.61e-06)|all_lung(180;1.5e-05)|Melanoma(134;0.0417)		GBM - Glioblastoma multiforme(94;7.81e-07)		GTGAGGCAAGGAAGAAGACGA	0.502													48	57					0	0	0.000781405	0	0
B2M	567	broad.mit.edu	37	15	45007827	45007827	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr15:45007827C>G	uc001zuc.2	+	2	334	c.274C>G	c.(274-276)CCC>GCC	p.P92A	B2M_uc010uek.1_Missense_Mutation_p.P92A|B2M_uc010bdx.1_Intron	NM_004048	NP_004039	P61769	B2MG_HUMAN	beta-2-microglobulin precursor	92	Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	early endosome membrane|Golgi membrane|MHC class I protein complex	protein binding			ovary(2)|skin(1)	3		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		TGAATTCACCCCCACTGAAAA	0.423													3	120					0	0	6.4e-05	0	0
SLC28A2	9153	broad.mit.edu	37	15	45562453	45562453	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr15:45562453G>A	uc001zva.2	+	15	1692	c.1627G>A	c.(1627-1629)GGA>AGA	p.G543R		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	543	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		TAGTTCCATAGGAATCACACT	0.433													41	50					0	0	0.00285205	0	0
ISLR2	57611	broad.mit.edu	37	15	74426504	74426504	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr15:74426504A>G	uc002axd.2	+	4	2178	c.1409A>G	c.(1408-1410)AAC>AGC	p.N470S	ISLR2_uc002axe.2_Missense_Mutation_p.N470S|ISLR2_uc010bjg.2_Missense_Mutation_p.N470S|ISLR2_uc010bjf.2_Missense_Mutation_p.N470S	NM_001130136	NP_001123608	Q6UXK2	ISLR2_HUMAN	immunoglobulin superfamily containing	470	Extracellular (Potential).				positive regulation of axon extension	cell surface|integral to membrane|plasma membrane					0						TACGTTTCTAACCACGCGTTC	0.662													8	10					0	0	0.000442599	0	0
CHRNB4	1143	broad.mit.edu	37	15	78922068	78922068	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr15:78922068A>C	uc002bed.1	-	5	691	c.579T>G	c.(577-579)GAT>GAG	p.D193E	CHRNB4_uc002bee.1_Intron|CHRNB4_uc010blh.1_Missense_Mutation_p.D11E	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	193	Extracellular (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						GAGTAAAGTCATCCATGCTGG	0.562													40	52					0	0	0.00148497	0	0
EFTUD1	79631	broad.mit.edu	37	15	82520603	82520603	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr15:82520603C>T	uc002bgt.1	-	10	1167	c.998G>A	c.(997-999)CGA>CAA	p.R333Q	EFTUD1_uc002bgu.1_Missense_Mutation_p.R282Q	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	333					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						GTCTGAATGTCGTGCCTCCCG	0.408													22	35					0	0	0.00229938	0	0
FSD2	123722	broad.mit.edu	37	15	83451553	83451553	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr15:83451553G>A	uc002bjd.2	-	4	1127	c.960C>T	c.(958-960)TTC>TTT	p.F320F	FSD2_uc010uol.1_Silent_p.F320F|FSD2_uc010uom.1_Silent_p.F320F	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	320										central_nervous_system(1)	1						TGACCTTTATGAAATCCACCT	0.378													125	182					0	0	0.000781405	0	0
PDE8A	5151	broad.mit.edu	37	15	85657248	85657248	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr15:85657248C>T	uc002blh.2	+	14	1519	c.1330C>T	c.(1330-1332)CTT>TTT	p.L444F	PDE8A_uc002bli.2_Missense_Mutation_p.L398F|PDE8A_uc010bnc.2_Missense_Mutation_p.L197F|PDE8A_uc010bnd.2_Missense_Mutation_p.L197F|PDE8A_uc002blj.2_Missense_Mutation_p.L64F|PDE8A_uc002blk.2_Missense_Mutation_p.L64F	NM_002605	NP_002596	O60658	PDE8A_HUMAN	phosphodiesterase 8A isoform 1	444					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(223;0.227)		BRCA - Breast invasive adenocarcinoma(143;0.0608)			TGCCAATGACCTTGTTGGGGG	0.423													32	38					0	0	0.00283554	0	0
WDR93	56964	broad.mit.edu	37	15	90280818	90280818	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr15:90280818C>T	uc002boj.2	+	15	1724	c.1623C>T	c.(1621-1623)TCC>TCT	p.S541S	WDR93_uc010bnr.2_Silent_p.S513S|WDR93_uc010upz.1_Silent_p.S258S	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	541					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			TCATCTTTTCCAAGAATGGCT	0.557													60	67					0	0	0.000781405	0	0
PKD1	5310	broad.mit.edu	37	16	2140133	2140133	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr16:2140133G>A	uc002cos.1	-	46	12716	c.12507C>T	c.(12505-12507)TCC>TCT	p.S4169S	PKD1_uc002cot.1_Silent_p.S4168S	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	4169	Cytoplasmic (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						GGGATACCTTGGAGCCCCTGG	0.692													16	37					0	0	0.000422831	0	0
TFAP4	7023	broad.mit.edu	37	16	4310169	4310169	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr16:4310169G>A	uc010uxg.1	-	6	998	c.744C>T	c.(742-744)ATC>ATT	p.I248I		NM_003223	NP_003214	Q01664	TFAP4_HUMAN	transcription factor AP-4 (activating enhancer	248					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation by host of viral transcription|negative regulation of cell cycle arrest|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|regulation of S phase of mitotic cell cycle	transcriptional repressor complex	E-box binding|histone deacetylase binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						TGACGACATTGATGTGGTGGG	0.627													43	30					0	0	0.000781405	0	0
ALG1	56052	broad.mit.edu	37	16	5123177	5123177	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr16:5123177G>A	uc002cym.2	+	3	351	c.310G>A	c.(310-312)GGA>AGA	p.G104R	ALG1_uc002cyj.2_5'UTR|ALG1_uc002cyn.2_Missense_Mutation_p.G104R|ALG1_uc010bue.2_5'UTR|ALG1_uc010uxy.1_5'UTR	NM_019109	NP_061982	Q9BT22	ALG1_HUMAN	beta-1,4-mannosyltransferase	104	Lumenal (Potential).				dolichol-linked oligosaccharide biosynthetic process|lipopolysaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	chitobiosyldiphosphodolichol beta-mannosyltransferase activity			upper_aerodigestive_tract(1)|ovary(1)	2		Ovarian(90;0.0164)				TTTCCAGTACGGAGTCAAAGT	0.512													20	37					0	0	0.00152264	0	0
MKL2	57496	broad.mit.edu	37	16	14341258	14341258	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr16:14341258C>T	uc010uza.1	+	12	2296	c.2141C>T	c.(2140-2142)CCC>CTC	p.P714L	MKL2_uc002dcg.2_Intron|MKL2_uc002dcj.2_5'Flank	NM_014048	NP_054767	Q9ULH7	MKL2_HUMAN	megakaryoblastic leukemia 2 protein	703	Gln-rich.				cell differentiation|muscle organ development|positive regulation of striated muscle tissue development|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		identical protein binding|nucleic acid binding|transcription coactivator activity			ovary(3)|kidney(1)|pancreas(1)	5						GTTGCTCAGCCCCAGGCTTTA	0.592													23	14					0	0	0.00229938	0	0
DNAH3	55567	broad.mit.edu	37	16	21098222	21098222	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr16:21098222G>A	uc010vbe.1	-	19	2825	c.2825C>T	c.(2824-2826)CCC>CTC	p.P942L		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	942	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ACTGAGGATGGGAATGTACTG	0.512													66	156					0	0	0.000781405	0	0
RBL2	5934	broad.mit.edu	37	16	53515595	53515595	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr16:53515595C>A	uc002ehi.3	+	21	3215	c.3097C>A	c.(3097-3099)CCA>ACA	p.P1033T	RBL2_uc002ehj.2_Missense_Mutation_p.P743T|RBL2_uc010vgw.1_Intron	NM_005611	NP_005602	Q08999	RBL2_HUMAN	retinoblastoma-like 2 (p130)	1033					cell cycle|chromatin modification|regulation of cell cycle|regulation of lipid kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						GGATGCTCCTCCACTCTCTCC	0.313													23	219					3.01185e-09	1.06938e-08	0.000586117	1	0
CDH11	1009	broad.mit.edu	37	16	64984767	64984767	+	Silent	SNP	C	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr16:64984767C>A	uc002eoi.2	-	12	2231	c.1797G>T	c.(1795-1797)GGG>GGT	p.G599G	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_Silent_p.G599G|CDH11_uc010vin.1_Silent_p.G473G	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	599	Cadherin 5.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		AGAGCAGTGCCCCGTTCACGT	0.602			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			12	23					9.31168e-06	3.2877e-05	0.00185496	1	0
ACD	65057	broad.mit.edu	37	16	67694194	67694194	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr16:67694194G>A	uc002etq.3	-	1	525	c.188C>T	c.(187-189)CCG>CTG	p.P63L	ACD_uc002etp.3_Missense_Mutation_p.P63L|ACD_uc002etr.3_Missense_Mutation_p.P63L|ACD_uc010vjt.1_Missense_Mutation_p.P53L|PARD6A_uc002ets.2_5'Flank|PARD6A_uc002ett.2_5'Flank|PARD6A_uc002etu.2_5'Flank	NM_001082486	NP_001075955	Q96AP0	ACD_HUMAN	adrenocortical dysplasia homolog isoform 1	63					intracellular protein transport|negative regulation of telomere maintenance via telomerase|positive regulation of single-stranded telomeric DNA binding|positive regulation of telomerase activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|telomere assembly	nuclear telomere cap complex|nucleoplasm	DNA binding|DNA polymerase binding			pancreas(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		GCCTTTCCTCGGAAGAGGAAG	0.741													16	5					0	0	0.000308642	0	0
SF3B3	23450	broad.mit.edu	37	16	70572248	70572248	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr16:70572248G>A	uc002ezf.2	+	7	1059	c.848G>A	c.(847-849)AGA>AAA	p.R283K		NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	283					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				GACCCTGAAAGAGGAATGATT	0.388													34	99					0	0	0.00148497	0	0
PKD1L2	114780	broad.mit.edu	37	16	81249940	81249941	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr16:81249940_81249941GG>AA	uc002fgh.1	-	2	372_373	c.372_373CC>TT	c.(370-375)GCCCCT>GCTTCT	p.P125S	PKD1L2_uc002fgj.2_Missense_Mutation_p.P125S	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	125	Extracellular (Potential).|C-type lectin.				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CAGGTGTCAGGGGCAGCGGCGG	0.649													13	31					0	0	6.4e-05	0	0
ANKRD11	29123	broad.mit.edu	37	16	89348234	89348234	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr16:89348234G>A	uc002fmx.1	-	9	5177	c.4716C>T	c.(4714-4716)CTC>CTT	p.L1572L	ANKRD11_uc002fmy.1_Silent_p.L1572L|ANKRD11_uc002fnc.1_Silent_p.L1572L|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Silent_p.L1529L	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1572	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		CGTCCCCCAGGAGCTTCTCCC	0.577													9	22					0	0	0.000442599	0	0
RPH3AL	9501	broad.mit.edu	37	17	177278	177278	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr17:177278C>T	uc002frd.1	-	1	101	c.57G>A	c.(55-57)CGG>CGA	p.R19R	RPH3AL_uc010vpy.1_Silent_p.R19R|RPH3AL_uc002fre.1_Silent_p.R19R|RPH3AL_uc002frf.1_Silent_p.R19R|RPH3AL_uc010cjl.1_Silent_p.R19R	NM_006987	NP_008918	Q9UNE2	RPH3L_HUMAN	rabphilin 3A-like (without C2 domains)	19					exocytosis|intracellular protein transport	transport vesicle membrane	cytoskeletal protein binding|Rab GTPase binding|zinc ion binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.023)|all cancers(1;4.96e-06)|Epithelial(1;2.86e-05)|BRCA - Breast invasive adenocarcinoma(1;0.00453)|OV - Ovarian serous cystadenocarcinoma(1;0.0716)|LUAD - Lung adenocarcinoma(1115;0.102)|COAD - Colon adenocarcinoma(4;0.107)		GGGCAAGCTGCCGGTCATTGG	0.622													17	33					0	0	0.00121646	0	0
SERPINF1	5176	broad.mit.edu	37	17	1674330	1674330	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr17:1674330G>A	uc002ftl.2	+	4	448	c.291G>A	c.(289-291)GAG>GAA	p.E97E	SERPINF1_uc010cjw.2_Intron	NM_002615	NP_002606	P36955	PEDF_HUMAN	serine (or cysteine) proteinase inhibitor, clade	97				EQ -> DE (in Ref. 1; AAA60058 and 9; AAB38685).	cell proliferation|negative regulation of angiogenesis|positive regulation of neurogenesis|regulation of proteolysis	extracellular space|melanosome	serine-type endopeptidase inhibitor activity			ovary(1)	1						CAGGAGCGGAGCAGCGAACAG	0.517													61	75					0	0	0.000781405	0	0
OR1D2	4991	broad.mit.edu	37	17	2995663	2995663	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr17:2995663G>A	uc010vrb.1	-	1	628	c.628C>T	c.(628-630)CCC>TCC	p.P210S		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	210	Helical; Name=5; (Potential).				cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						AATCCAAAGGGAATGAGGAAG	0.443													62	69					0	0	0.000781405	0	0
OR1D2	4991	broad.mit.edu	37	17	2995982	2995982	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr17:2995982G>A	uc010vrb.1	-	1	309	c.309C>T	c.(307-309)TTC>TTT	p.F103F		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	103	Helical; Name=3; (Potential).				cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						AGGAGACCAGGAAGTAGAGCT	0.542													80	77					0	0	0.000781405	0	0
OR1G1	8390	broad.mit.edu	37	17	3030271	3030271	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr17:3030271G>A	uc002fvc.1	-	1	575	c.575C>T	c.(574-576)CCC>CTC	p.P192L		NM_003555	NP_003546	P47890	OR1G1_HUMAN	olfactory receptor, family 1, subfamily G,	192	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATTGGTGAAGGGGTCTGTGCA	0.498													56	58					0	0	0.000781405	0	0
ZMYND15	84225	broad.mit.edu	37	17	4644204	4644204	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr17:4644204G>A	uc002fyt.2	+	2	400	c.361G>A	c.(361-363)GAA>AAA	p.E121K	CXCL16_uc002fyr.3_5'Flank|CXCL16_uc002fys.3_5'Flank|ZMYND15_uc002fyv.2_Missense_Mutation_p.E121K|ZMYND15_uc002fyu.2_Missense_Mutation_p.E121K	NM_032265	NP_115641	Q9H091	ZMY15_HUMAN	zinc finger, MYND-type containing 15 isoform 2	121	Glu-rich.						zinc ion binding				0						ggaagaggaggaagatgaaga	0.438													9	10					0	0	0.000274275	0	0
CHD3	1107	broad.mit.edu	37	17	7796803	7796803	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr17:7796803T>C	uc002gje.2	+	5	859	c.709T>C	c.(709-711)TCC>CCC	p.S237P	CHD3_uc002gjd.2_Missense_Mutation_p.S296P|CHD3_uc002gjf.2_Missense_Mutation_p.S237P|CHD3_uc002gjg.1_Missense_Mutation_p.S69P	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	237					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				CATAGCACCCTCCGGACCCCC	0.493													5	2					0	0	0.00198382	0	0
MYH8	4626	broad.mit.edu	37	17	10319023	10319023	+	Nonsense_Mutation	SNP	G	A	A	rs143063345		TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr17:10319023G>A	uc002gmm.2	-	6	609	c.514C>T	c.(514-516)CGA>TGA	p.R172*	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	172	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TGATTCTCTCGATCTGTGAAA	0.333									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				25	13					0	0	0.00106085	0	0
GSDMB	55876	broad.mit.edu	37	17	38062460	38062460	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr17:38062460G>A	uc010cwj.2	-	7	797	c.792C>T	c.(790-792)GTC>GTT	p.V264V	GSDMB_uc010cwi.2_Silent_p.V11V|GSDMB_uc010cwk.2_RNA|GSDMB_uc010cwl.2_RNA|GSDMB_uc010cwm.2_RNA|GSDMB_uc002htg.2_Silent_p.V242V|GSDMB_uc002hth.2_Silent_p.V251V|GSDMB_uc010wem.1_Silent_p.V255V	NM_001042471	NP_001035936	Q8TAX9	GSDMB_HUMAN	gasdermin B isoform 1	259	Potential.					cytoplasm				breast(1)|pancreas(1)	2						GGTCCTTGAGGACACTCTCCA	0.502													35	50					0	0	0.000814825	0	0
TNS4	84951	broad.mit.edu	37	17	38635928	38635929	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr17:38635928_38635929CC>TT	uc010cxb.2	-	10	2071_2072	c.1907_1908GG>AA	c.(1906-1908)AGG>AAA	p.R636K	TNS4_uc002huu.3_Intron	NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	636	Phosphatase tensin-type.				apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			GCCCTTACTTCCTCTGGACATC	0.475													20	34					0	0	6.4e-05	0	0
KRT25	147183	broad.mit.edu	37	17	38906748	38906748	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr17:38906748G>A	uc002hve.2	-	6	1120	c.1059C>T	c.(1057-1059)CAC>CAT	p.H353H		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	353	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				TTCTGACCTGGTGCAGCTGCT	0.572													93	112					0	0	0.000781405	0	0
KCNJ16	3773	broad.mit.edu	37	17	68128418	68128418	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr17:68128418A>C	uc002jin.2	+	5	676	c.190A>C	c.(190-192)ACT>CCT	p.T64P	KCNJ16_uc002jio.2_Missense_Mutation_p.T64P|KCNJ16_uc002jip.2_Missense_Mutation_p.T64P|KCNJ16_uc002jiq.2_Missense_Mutation_p.T96P	NM_018658	NP_061128	Q9NPI9	IRK16_HUMAN	potassium inwardly-rectifying channel J16	64	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Breast(10;2.96e-09)					CATCTTCACCACTCTTGTGGA	0.408													35	57					0	0	0.00058488	0	0
ZNF750	79755	broad.mit.edu	37	17	80788605	80788605	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr17:80788605C>T	uc002kga.2	-	3	1896	c.1585G>A	c.(1585-1587)GAA>AAA	p.E529K	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	529						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			TACGTGGGTTCGTGGGTGGCT	0.617													38	37					0	0	0.00170553	0	0
MOCOS	55034	broad.mit.edu	37	18	33795660	33795660	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr18:33795660G>A	uc002kzq.3	+	8	1540	c.1517G>A	c.(1516-1518)GGG>GAG	p.G506E		NM_017947	NP_060417	Q96EN8	MOCOS_HUMAN	molybdenum cofactor sulfurase	506					Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	lyase activity|Mo-molybdopterin cofactor sulfurase activity|molybdenum ion binding|pyridoxal phosphate binding	p.G506R(1)		skin(1)	1					Pyridoxal Phosphate(DB00114)	GCTGACACCGGGGAGACTGGA	0.592													7	12					0	0	0.00198382	0	0
FHOD3	80206	broad.mit.edu	37	18	34289066	34289066	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr18:34289066G>T	uc002kzt.1	+	14	1766	c.1669G>T	c.(1669-1671)GGG>TGG	p.G557W	FHOD3_uc002kzr.1_Missense_Mutation_p.G557W|FHOD3_uc002kzs.1_Missense_Mutation_p.G574W|FHOD3_uc010dmz.1_Missense_Mutation_p.G289W|FHOD3_uc010dna.1_5'UTR	NM_025135	NP_079411	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	557					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			skin(3)|large_intestine(2)|breast(2)|ovary(1)	8		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				AGCAAGTGCCGGGGATCCTGA	0.532													5	128					0.00198382	0.00688886	0.00198382	1	0
SETBP1	26040	broad.mit.edu	37	18	42530952	42530952	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr18:42530952C>T	uc010dni.2	+	4	1943	c.1647C>T	c.(1645-1647)GCC>GCT	p.A549A		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	549						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		CAGTTATGGCCACCTCTGATA	0.507									Schinzel-Giedion_syndrome				47	95					0	0	0.000781405	0	0
SETBP1	26040	broad.mit.edu	37	18	42533292	42533292	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr18:42533292C>T	uc010dni.2	+	4	4283	c.3987C>T	c.(3985-3987)TCC>TCT	p.S1329S		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	1329						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		CTTATGACTCCTCCATGTCTC	0.448									Schinzel-Giedion_syndrome				13	26					0	0	0.00244969	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45556242	45556242	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr18:45556242C>T	uc002lda.2	-	2	1265	c.1249G>A	c.(1249-1251)GAG>AAG	p.E417K	ZBTB7C_uc002ldb.2_Missense_Mutation_p.E417K|ZBTB7C_uc010dnu.2_Missense_Mutation_p.E426K|ZBTB7C_uc010dnv.2_Missense_Mutation_p.E439K|ZBTB7C_uc010dnw.2_Missense_Mutation_p.E417K	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	417						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TAGGGCCGCTCCCCTGTGTGC	0.592													18	17					0	0	0.00152264	0	0
CNDP1	84735	broad.mit.edu	37	18	72245505	72245505	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr18:72245505A>G	uc002llq.2	+	9	1321	c.1110A>G	c.(1108-1110)ATA>ATG	p.I370M	CNDP1_uc002lls.2_Missense_Mutation_p.I173M	NM_032649	NP_116038	Q96KN2	CNDP1_HUMAN	carnosinase 1 precursor	370					proteolysis	extracellular region	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity|tripeptidase activity				0		Esophageal squamous(42;0.129)|Prostate(75;0.157)|Melanoma(33;0.211)		BRCA - Breast invasive adenocarcinoma(31;0.109)		GCCGAGTTATAGGAAAATTTT	0.428													57	48					0	0	0.000781405	0	0
OR7E24	26648	broad.mit.edu	37	19	9362107	9362107	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:9362107G>A	uc002mlb.1	+	1	388	c.388G>A	c.(388-390)GAC>AAC	p.D130N		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	130	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ATGTATGGATGACATGCTCCT	0.488													27	44					0	0	0.000878237	0	0
RAD23A	5886	broad.mit.edu	37	19	13063580	13063580	+	Silent	SNP	G	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:13063580G>T	uc002mvw.1	+	8	1000	c.891G>T	c.(889-891)GTG>GTT	p.V297V	RAD23A_uc002mvx.1_Silent_p.V296V|RAD23A_uc002mvz.1_Silent_p.V296V|RAD23A_uc002mwa.1_Intron|RAD23A_uc002mvy.1_Silent_p.V131V|RAD23A_uc010xmw.1_Silent_p.V132V	NM_005053	NP_005044	P54725	RD23A_HUMAN	UV excision repair protein RAD23 homolog A	297					interspecies interaction between organisms|nucleotide-excision repair|positive regulation of viral genome replication|proteasomal ubiquitin-dependent protein catabolic process|regulation of proteasomal ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	damaged DNA binding|polyubiquitin binding|single-stranded DNA binding			central_nervous_system(1)	1						TCTCAGATGTGGAGGGGGAGG	0.617								NER					20	59					1.55795e-14	5.57859e-14	0.00188189	1	0
NXNL1	115861	broad.mit.edu	37	19	17571378	17571378	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:17571378G>A	uc002ngs.2	-	1	348	c.301C>T	c.(301-303)CTG>TTG	p.L101L		NM_138454	NP_612463	Q96CM4	NXNL1_HUMAN	nucleoredoxin-like 1	101	Thioredoxin.				cell redox homeostasis	nuclear outer membrane					0						TCAAAGGGCAGGAAAAGCCAT	0.378													25	30					0	0	0.00127121	0	0
FAM129C	199786	broad.mit.edu	37	19	17648261	17648261	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:17648261C>T	uc010xpr.1	+	6	735	c.597C>T	c.(595-597)TTC>TTT	p.F199F	FAM129C_uc010xpq.1_Silent_p.F199F|FAM129C_uc010xps.1_Silent_p.F168F|FAM129C_uc010xpt.1_RNA|FAM129C_uc002ngy.3_5'Flank|FAM129C_uc010xpu.1_5'Flank|FAM129C_uc002ngz.3_5'Flank|FAM129C_uc010eaw.2_5'Flank|FAM129C_uc002nhb.2_5'Flank	NM_173544	NP_775815	Q86XR2	NIBL2_HUMAN	B-cell novel protein 1 isoform a	199											0						AGCACCCCTTCCGCCGGCACC	0.617													51	69					0	0	0.000781405	0	0
ZNF91	7644	broad.mit.edu	37	19	23542295	23542295	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:23542295G>A	uc002nre.2	-	4	3599	c.3486C>T	c.(3484-3486)ATC>ATT	p.I1162I	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Silent_p.I1130I	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	1162						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				aaagtagtgggattacaggtg	0.154													14	20					0	0	0.00185496	0	0
WDR62	284403	broad.mit.edu	37	19	36593925	36593925	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:36593925C>T	uc002odc.2	+	28	3487	c.3396C>T	c.(3394-3396)GGC>GGT	p.G1132G	WDR62_uc002odd.2_Silent_p.G1137G	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	1132	WD 14.				cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			TGGACCGAGGCGGAAGCCAGC	0.647													18	22					0	0	0.00074312	0	0
HNRNPL	3191	broad.mit.edu	37	19	39330868	39330868	+	Silent	SNP	T	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:39330868T>G	uc010xul.1	-	8	1112	c.1101A>C	c.(1099-1101)CCA>CCC	p.P367P	HNRNPL_uc010ege.1_Silent_p.P23P|HNRNPL_uc002ojj.1_Silent_p.P23P|HNRNPL_uc002ojo.1_5'Flank|HNRNPL_uc002ojk.2_Silent_p.P23P|HNRNPL_uc002ojl.2_Silent_p.P23P|HNRNPL_uc010xum.1_Silent_p.P234P|HNRNPL_uc002ojp.1_Silent_p.P23P|HNRNPL_uc010xun.1_Missense_Mutation_p.H75P	NM_001533	NP_001524	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	367	Pro-rich.				nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			GGGGAGGGGGTGGGGGGTGCC	0.642													3	9					0	0	0.000157383	0	0
PSMC4	5704	broad.mit.edu	37	19	40480235	40480235	+	Silent	SNP	C	T	T	rs138214626		TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:40480235C>T	uc002omq.2	+	4	394	c.357C>T	c.(355-357)ATC>ATT	p.I119I	PSMC4_uc002omr.2_Silent_p.I88I	NM_006503	NP_006494	P43686	PRS6B_HUMAN	proteasome 26S ATPase subunit 4 isoform 1	119					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			ovary(1)	1	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TGAGCACCATCGATCGGGAGC	0.597													19	28					0	0	0.00047179	0	0
CADM4	199731	broad.mit.edu	37	19	44131417	44131417	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:44131417T>A	uc002oxc.1	-	3	314	c.265A>T	c.(265-267)ATC>TTC	p.I89F		NM_145296	NP_660339	Q8NFZ8	CADM4_HUMAN	cell adhesion molecule 4 precursor	89	Ig-like V-type.|Extracellular (Potential).				cell adhesion	integral to membrane					0		Prostate(69;0.0199)				GAGAGCCGGATCCGCACCCGG	0.602													17	43					0	0	0.00121646	0	0
TOMM40	10452	broad.mit.edu	37	19	45394827	45394827	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:45394827G>A	uc002ozx.3	+	2	256	c.155G>A	c.(154-156)CGA>CAA	p.R52Q	TOMM40_uc002ozy.3_Missense_Mutation_p.R52Q|TOMM40_uc002paa.3_Missense_Mutation_p.R52Q|TOMM40_uc002ozz.2_Missense_Mutation_p.R52Q	NM_006114	NP_006105	O96008	TOM40_HUMAN	translocase of outer mitochondrial membrane 40	52					protein targeting to mitochondrion	integral to membrane of membrane fraction|integral to mitochondrial outer membrane|mitochondrial outer membrane translocase complex|pore complex	porin activity|protein transmembrane transporter activity|voltage-gated anion channel activity				0	Lung NSC(12;0.0018)|all_lung(12;0.00481)			OV - Ovarian serous cystadenocarcinoma(262;0.0033)|Epithelial(262;0.176)		AGTACGAGTCGAAGTTCGGAA	0.493													13	14					0	0	0.00244969	0	0
GPR77	27202	broad.mit.edu	37	19	47844173	47844173	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:47844173C>T	uc010ela.1	+	2	335	c.117C>T	c.(115-117)CTC>CTT	p.L39L	GPR77_uc002pgk.1_Silent_p.L39L	NM_018485	NP_060955	Q9P296	C5ARL_HUMAN	G protein-coupled receptor 77	39	Helical; Name=1; (Potential).				chemotaxis	integral to membrane|plasma membrane	C5a anaphylatoxin receptor activity			ovary(1)	1		all_cancers(25;1.72e-06)|all_lung(116;2.15e-05)|all_epithelial(76;3.44e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.0652)|Ovarian(192;0.086)		all cancers(93;0.000129)|OV - Ovarian serous cystadenocarcinoma(262;0.000415)|Epithelial(262;0.0109)|GBM - Glioblastoma multiforme(486;0.0138)		TGGCCCCGCTCCCACTGTATG	0.692													37	43					0	0	0.00195071	0	0
PRR12	57479	broad.mit.edu	37	19	50099247	50099247	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:50099247C>T	uc002poo.3	+	4	1655	c.1655C>T	c.(1654-1656)TCC>TTC	p.S552F		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		GGACCCAGCTCCCTGGGAGGC	0.711													39	32					0	0	0.00148497	0	0
CPT1C	126129	broad.mit.edu	37	19	50209210	50209210	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:50209210C>T	uc002ppj.2	+	10	1214	c.1009C>T	c.(1009-1011)CAC>TAC	p.H337Y	CPT1C_uc002ppl.3_Missense_Mutation_p.H303Y|CPT1C_uc002ppi.2_Missense_Mutation_p.H254Y|CPT1C_uc002ppk.2_Missense_Mutation_p.H326Y|CPT1C_uc010eng.2_Missense_Mutation_p.H337Y|CPT1C_uc010enh.2_Missense_Mutation_p.H337Y|CPT1C_uc010ybc.1_Missense_Mutation_p.H208Y|CPT1C_uc010eni.1_5'UTR	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	337	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		GGCTGTCTTCCACCGGGGCCG	0.582													18	54					0	0	0.000720815	0	0
MYBPC2	4606	broad.mit.edu	37	19	50958811	50958811	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:50958811G>A	uc002psf.2	+	20	2299	c.2248G>A	c.(2248-2250)GAC>AAC	p.D750N		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	750	Fibronectin type-III 2.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		GGATGTGACAGACACCACCAC	0.587													36	68					0	0	0.00148497	0	0
ETFB	2109	broad.mit.edu	37	19	51856511	51856511	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:51856511C>T	uc002pwh.2	-	3	342	c.250G>A	c.(250-252)GAC>AAC	p.D84N	ETFB_uc002pwg.2_Missense_Mutation_p.D175N	NM_001985	NP_001976	P38117	ETFB_HUMAN	electron-transfer-flavoprotein, beta polypeptide	84					respiratory electron transport chain|transport	mitochondrial matrix	electron carrier activity				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000226)|OV - Ovarian serous cystadenocarcinoma(262;0.00661)		ATACCTCGGTCTGCACCCATG	0.562													34	47					0	0	0.00111076	0	0
ZNF528	84436	broad.mit.edu	37	19	52909821	52909821	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:52909821C>T	uc002pzh.2	+	6	622	c.196C>T	c.(196-198)CCC>TCC	p.P66S	ZNF528_uc002pzi.2_5'UTR	NM_032423	NP_115799	Q3MIS6	ZN528_HUMAN	zinc finger protein 528	66	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(134;0.00249)|OV - Ovarian serous cystadenocarcinoma(262;0.00817)		AAAGAGAGATCCCTGGACTCT	0.473													39	37					0	0	0.0025221	0	0
ZNF600	162966	broad.mit.edu	37	19	53269225	53269225	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:53269225G>A	uc002qab.3	-	3	2070	c.1784C>T	c.(1783-1785)TCA>TTA	p.S595L		NM_198457	NP_940859	Q6ZNG1	ZN600_HUMAN	zinc finger protein 600	595	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0241)|GBM - Glioblastoma multiforme(134;0.0404)		TGCCAGGTATGAATTACGCAC	0.408													72	98					0	0	0.000781405	0	0
NLRP12	91662	broad.mit.edu	37	19	54312870	54312870	+	Silent	SNP	G	A	A	rs141711127	by1000genomes	TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:54312870G>A	uc002qch.3	-	3	2263	c.2043C>T	c.(2041-2043)TCC>TCT	p.S681S	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Silent_p.S681S|NLRP12_uc002qcj.3_Silent_p.S681S|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Silent_p.S681S	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	681					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		GCGCTCCTGCGGAGCACCTCG	0.557													16	20					0	0	0.000422831	0	0
ZIM2	23619	broad.mit.edu	37	19	57293402	57293402	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:57293402C>T	uc002qnr.2	-	9	947	c.565G>A	c.(565-567)GAA>AAA	p.E189K	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_5'UTR|ZIM2_uc002qnq.2_Missense_Mutation_p.E189K|ZIM2_uc010etp.2_Missense_Mutation_p.E189K|ZIM2_uc010ygs.1_Missense_Mutation_p.E189K	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	189	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		GAACTAAGTTCCTCTGGGCTG	0.507													57	68					0	0	0.000781405	0	0
DDX1	1653	broad.mit.edu	37	2	15735288	15735288	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:15735288G>A	uc002rce.2	+	2	324	c.36G>A	c.(34-36)GAG>GAA	p.E12E	DDX1_uc010yjq.1_Intron	NM_004939	NP_004930	Q92499	DDX1_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	12	Necessary for interaction with HNRNPK.|Necessary for interaction with RELA.|Helicase ATP-binding.				DNA duplex unwinding|double-strand break repair|multicellular organismal development|regulation of transcription, DNA-dependent|regulation of translational initiation|spliceosome assembly|transcription, DNA-dependent	cleavage body|stress granule|tRNA-splicing ligase complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|DNA/RNA helicase activity|exonuclease activity|poly(A) RNA binding|protein binding|RNA helicase activity|transcription cofactor activity			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.197)	all_epithelial(98;2.96e-07)|Acute lymphoblastic leukemia(84;4.24e-05)|Ovarian(717;0.0694)	GBM - Glioblastoma multiforme(3;0.00969)	Epithelial(75;4.35e-05)|OV - Ovarian serous cystadenocarcinoma(76;0.133)		TAATGCCTGAGATTGCACAAG	0.318													20	29					0	0	0.00229938	0	0
C2orf16	84226	broad.mit.edu	37	2	27804224	27804224	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:27804224G>A	uc002rkz.3	+	1	4836	c.4785G>A	c.(4783-4785)AGG>AGA	p.R1595R	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1595	1.|27 X 8 AA approximative tandem repeat of P-S-E-R-S-H-H-S.|Arg-rich.									large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					GTCCCTCTAGGAAAAACCATT	0.547													39	50					0	0	0.00170553	0	0
PRKD3	23683	broad.mit.edu	37	2	37543442	37543442	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:37543442C>T	uc002rqd.2	-	1	781	c.226G>A	c.(226-228)GAA>AAA	p.E76K	PRKD3_uc002rqf.1_Missense_Mutation_p.E76K	NM_005813	NP_005804	O94806	KPCD3_HUMAN	protein kinase D3	76					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(2)|ovary(1)|central_nervous_system(1)	4		all_hematologic(82;0.21)				TCCTGGGCTTCAATGGTAACA	0.428													46	94					0	0	0.000781405	0	0
DHX57	90957	broad.mit.edu	37	2	39088480	39088480	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:39088480G>A	uc002rrf.2	-	5	1171	c.1072C>T	c.(1072-1074)CGA>TGA	p.R358*	DHX57_uc002rre.2_5'UTR|DHX57_uc002rrg.2_Nonsense_Mutation_p.R358*	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	358							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				TTAGAAAATCGAATTTCAAGT	0.368													25	31					0	0	0.00047179	0	0
THADA	63892	broad.mit.edu	37	2	43819134	43819134	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:43819134A>C	uc002rsw.3	-	3	480	c.128T>G	c.(127-129)GTG>GGG	p.V43G	THADA_uc002rsx.3_Missense_Mutation_p.V43G|THADA_uc002rsy.3_RNA|THADA_uc002rsz.2_5'UTR|THADA_uc002rta.2_5'UTR|THADA_uc002rtb.1_Missense_Mutation_p.V43G|THADA_uc002rtc.3_Missense_Mutation_p.V43G|THADA_uc002rtd.2_Missense_Mutation_p.V43G	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	43							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				CGTGAGTTGCACACAATGTAA	0.318													152	208					0	0	0.000781405	0	0
LRPPRC	10128	broad.mit.edu	37	2	44203350	44203350	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:44203350C>T	uc002rtr.2	-	6	727	c.669G>A	c.(667-669)ATG>ATA	p.M223I	LRPPRC_uc010yob.1_Missense_Mutation_p.M123I|LRPPRC_uc010faw.1_Missense_Mutation_p.M197I	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	223	PPR 3.				mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CCTTAGTTTTCATAAATCCAA	0.393													146	203					0	0	0.000781405	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69049478	69049478	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:69049478G>C	uc002seu.2	+	10	1568	c.1204G>C	c.(1204-1206)GAC>CAC	p.D402H	ARHGAP25_uc010fdg.2_Missense_Mutation_p.D403H|ARHGAP25_uc010yql.1_Missense_Mutation_p.D363H|ARHGAP25_uc002sew.2_Missense_Mutation_p.D395H|ARHGAP25_uc002sex.2_Missense_Mutation_p.D396H|ARHGAP25_uc002sey.2_Missense_Mutation_p.D129H	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	402					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						CTAGACAAGCGACTCTGATAC	0.507													45	91					0	0	0.000781405	0	0
KDM3A	55818	broad.mit.edu	37	2	86711207	86711207	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:86711207T>C	uc002sri.3	+	19	3347	c.3020T>C	c.(3019-3021)GTT>GCT	p.V1007A	KDM3A_uc010ytj.1_Missense_Mutation_p.V1007A|KDM3A_uc010ytk.1_Missense_Mutation_p.V955A	NM_018433	NP_060903	Q9Y4C1	KDM3A_HUMAN	jumonji domain containing 1A	1007					androgen receptor signaling pathway|cell differentiation|formaldehyde biosynthetic process|histone H3-K9 demethylation|hormone-mediated signaling pathway|positive regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleus	androgen receptor binding|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	5						GTAGACCTAGTTAATTGTAGG	0.418													36	45					0	0	0.000814825	0	0
EIF5B	9669	broad.mit.edu	37	2	99988138	99988138	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:99988138G>A	uc002tab.2	+	9	1681	c.1497G>A	c.(1495-1497)GAG>GAA	p.E499E		NM_015904	NP_056988	O60841	IF2P_HUMAN	eukaryotic translation initiation factor 5B	499					regulation of translational initiation	cytosol	GTP binding|GTPase activity|protein binding|translation initiation factor activity			ovary(2)|pancreas(1)	3						AAGATACTGAGGATGCTGGAT	0.338													16	22					0	0	0.00152264	0	0
REV1	51455	broad.mit.edu	37	2	100058829	100058829	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:100058829C>T	uc002tad.2	-	5	665	c.453G>A	c.(451-453)GAG>GAA	p.E151E	REV1_uc002tac.2_Silent_p.E151E|REV1_uc002tae.1_Silent_p.E130E	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	151					DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						GCAGAGGATCCTCAGGTCTGC	0.458								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					35	38					0	0	0.000814825	0	0
POLR1B	84172	broad.mit.edu	37	2	113325561	113325561	+	Silent	SNP	A	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:113325561A>G	uc002thw.2	+	11	2344	c.1764A>G	c.(1762-1764)AGA>AGG	p.R588R	POLR1B_uc010fkn.2_Silent_p.R532R|POLR1B_uc002thx.2_Silent_p.R449R|POLR1B_uc010fko.2_Silent_p.R405R|POLR1B_uc010fkp.2_Silent_p.R27R|POLR1B_uc010yxn.1_Silent_p.R626R|POLR1B_uc002thy.2_Silent_p.R449R|POLR1B_uc010yxo.1_Silent_p.R365R	NM_019014	NP_061887	Q9H9Y6	RPA2_HUMAN	RNA polymerase I polypeptide B isoform 1	588					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(1)	1						GAGAGAAAAGAATTCCTCCCT	0.463													21	34					0	0	0.00229938	0	0
NCKAP5	344148	broad.mit.edu	37	2	133542936	133542936	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:133542936G>A	uc002ttp.2	-	14	1822	c.1448C>T	c.(1447-1449)TCC>TTC	p.S483F	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	483							protein binding				0						TGCTAAGGTGGAAGGGTCATC	0.527													60	63					0	0	0.000781405	0	0
RAB3GAP1	22930	broad.mit.edu	37	2	135884211	135884211	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:135884211C>T	uc002tuj.2	+	11	983	c.958C>T	c.(958-960)CCT>TCT	p.P320S	RAB3GAP1_uc010fnf.2_Missense_Mutation_p.P320S|RAB3GAP1_uc010fng.2_Missense_Mutation_p.P145S|RAB3GAP1_uc010fnh.1_RNA	NM_012233	NP_036365	Q15042	RB3GP_HUMAN	RAB3 GTPase-activating protein	320						centrosome|nucleus|soluble fraction	Rab GTPase activator activity|Rab GTPase binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.117)		AGCTGAGAATCCTCAGTGTTT	0.358													84	97					0	0	0.000781405	0	0
RIF1	55183	broad.mit.edu	37	2	152273114	152273114	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:152273114C>T	uc002txm.2	+	5	450	c.320C>T	c.(319-321)ACC>ATC	p.T107I	RIF1_uc002txl.2_Missense_Mutation_p.T107I|RIF1_uc010fnv.1_Missense_Mutation_p.T71I|RIF1_uc002txn.2_Missense_Mutation_p.T107I|RIF1_uc002txo.2_Missense_Mutation_p.T107I|RIF1_uc010zby.1_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	107					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		TTGAATGATACCATTAAGAAT	0.333													116	132					0	0	0.000781405	0	0
NEB	4703	broad.mit.edu	37	2	152507246	152507246	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:152507246A>T	uc010fnx.2	-	53	7260	c.7069T>A	c.(7069-7071)TTC>ATC	p.F2357I		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2357	Nebulin 63.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GGGCTGGAGAACTTAGTTTTC	0.458													190	219					0	0	0.000781405	0	0
NEB	4703	broad.mit.edu	37	2	152525626	152525626	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:152525626C>T	uc010fnx.2	-	39	4717	c.4526G>A	c.(4525-4527)GGA>GAA	p.G1509E		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1509	Nebulin 38.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CAGTTTCTCTCCCTCTACCTT	0.398													3	9					0	0	6.4e-05	0	0
PRPF40A	55660	broad.mit.edu	37	2	153520278	153520278	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:153520278C>T	uc002tyh.3	-	19	2001	c.1979G>A	c.(1978-1980)GGA>GAA	p.G660E	PRPF40A_uc002tyg.3_Missense_Mutation_p.G116E|PRPF40A_uc010zcd.1_Missense_Mutation_p.G611E	NM_017892	NP_060362	O75400	PR40A_HUMAN	formin binding protein 3	687					mRNA processing|RNA splicing	nuclear matrix|nuclear speck	protein binding				0						AACTACAAATCCTTTATCCTA	0.269													23	39					0	0	0.00278032	0	0
KCNH7	90134	broad.mit.edu	37	2	163292066	163292066	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:163292066G>A	uc002uch.1	-	8	1808	c.1596C>T	c.(1594-1596)CTC>CTT	p.L532L	KCNH7_uc002uci.2_Silent_p.L525L	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	532	Helical; Voltage-sensor; Name=Segment S4; (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	GCACAAGACGGAGGAGTCGGG	0.443													29	34					0	0	0.00178596	0	0
LRP2	4036	broad.mit.edu	37	2	170032974	170032974	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:170032974G>A	uc002ues.2	-	54	10731	c.10518C>T	c.(10516-10518)ACC>ACT	p.T3506T		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3506	Extracellular (Potential).|EGF-like 13.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GCATGCAGTAGGTGCTGCCAC	0.552													23	29					0	0	0.00229938	0	0
SCRN3	79634	broad.mit.edu	37	2	175268966	175268966	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:175268966C>T	uc002uiq.2	+	5	765	c.677C>T	c.(676-678)TCC>TTC	p.S226F	SCRN3_uc010zen.1_Missense_Mutation_p.S219F|SCRN3_uc010zeo.1_Missense_Mutation_p.S24F	NM_024583	NP_078859	Q0VDG4	SCRN3_HUMAN	secernin 3	226					proteolysis		dipeptidase activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.229)			GCAGCATATTCCTATCTTGAC	0.403													23	20					0	0	0.000720815	0	0
TTN	7273	broad.mit.edu	37	2	179477898	179477898	+	Silent	SNP	C	T	T	rs7355450		TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:179477898C>T	uc010zfg.1	-	213	42158	c.41934G>A	c.(41932-41934)AAG>AAA	p.K13978K	uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.K7673K|TTN_uc010zfi.1_Silent_p.K7606K|TTN_uc010zfj.1_Silent_p.K7481K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14905							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTATGGGATCCTTTATTAAGA	0.333													22	27					0	0	0.00152264	0	0
TTN	7273	broad.mit.edu	37	2	179611971	179611971	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:179611971G>A	uc002unb.2	-	46	15380	c.15156C>T	c.(15154-15156)TCC>TCT	p.S5052S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGGGGGTGTGGAGTATCTTT	0.483													21	32					0	0	0.00152264	0	0
STAT4	6775	broad.mit.edu	37	2	191941042	191941042	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:191941042G>A	uc002usm.1	-	4	537	c.283C>T	c.(283-285)CAT>TAT	p.H95Y	STAT4_uc002usn.1_Missense_Mutation_p.H95Y|STAT4_uc002uso.2_Missense_Mutation_p.H95Y|STAT4_uc002usp.3_Missense_Mutation_p.H95Y	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	95					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			GGATTTCCATGAAATTTTCCC	0.328													48	63					0	0	0.000781405	0	0
FARSB	10056	broad.mit.edu	37	2	223436631	223436631	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:223436631G>A	uc002vne.1	-	17	1764	c.1729C>T	c.(1729-1731)CCC>TCC	p.P577S	FARSB_uc010zlq.1_Missense_Mutation_p.P597S|FARSB_uc002vnf.1_Missense_Mutation_p.P478S	NM_005687	NP_005678	Q9NSD9	SYFB_HUMAN	phenylalanyl-tRNA synthetase, beta subunit	577					phenylalanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|RNA binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(121;3.47e-10)|all cancers(144;1.86e-07)|LUSC - Lung squamous cell carcinoma(224;0.00871)|Lung(261;0.011)	L-Phenylalanine(DB00120)	GAGGAGCAGGGCATGGTCAGC	0.527													16	26					0	0	0.000566183	0	0
SCG2	7857	broad.mit.edu	37	2	224462334	224462334	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:224462334G>A	uc002vnm.2	-	2	1800	c.1667C>T	c.(1666-1668)TCT>TTT	p.S556F		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	556					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		AGTCTCCTGAGAGCTGCCTTG	0.517													29	34					0	0	0.00127121	0	0
NEU2	4759	broad.mit.edu	37	2	233899088	233899088	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:233899088C>T	uc010zmn.1	+	2	464	c.464C>T	c.(463-465)TCC>TTC	p.S155F		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	155							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		CGGGAGTGGTCCACCTTTGCA	0.657													9	16					0	0	0.000673444	0	0
HJURP	55355	broad.mit.edu	37	2	234749335	234749335	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:234749335G>A	uc002vvg.2	-	8	2157	c.2091C>T	c.(2089-2091)TCC>TCT	p.S697S	HJURP_uc010znd.1_Silent_p.S636S|HJURP_uc010zne.1_Silent_p.S605S	NM_018410	NP_060880	Q8NCD3	HJURP_HUMAN	Holliday junction recognition protein	697					cell cycle|CenH3-containing nucleosome assembly at centromere|centromeric core chromatin assembly|chromosome segregation|regulation of DNA binding|regulation of protein complex assembly	condensed chromosome kinetochore|cytoplasm|nucleolus|nucleoplasm	DNA binding|histone binding			ovary(1)	1		Breast(86;0.00204)|all_lung(227;0.00433)|Renal(207;0.00685)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0719)|Lung SC(224;0.128)		Epithelial(121;2.01e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000186)|Lung(119;0.00521)|LUSC - Lung squamous cell carcinoma(224;0.00829)		AGGCACCCAGGGAATTGCCCT	0.592													61	78					0	0	0.000781405	0	0
SH3BP4	23677	broad.mit.edu	37	2	235951888	235951888	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:235951888G>A	uc002vvp.2	+	4	2868	c.2475G>A	c.(2473-2475)GTG>GTA	p.V825V	SH3BP4_uc010fym.2_Silent_p.V807V|SH3BP4_uc002vvq.2_Silent_p.V825V	NM_014521	NP_055336	Q9P0V3	SH3B4_HUMAN	SH3-domain binding protein 4	825					endocytosis	clathrin-coated vesicle|coated pit|nucleus	protein binding			skin(3)|ovary(1)	4		Breast(86;0.000332)|Renal(207;0.00339)|all_lung(227;0.00458)|all_hematologic(139;0.0296)|Lung NSC(271;0.0419)		Epithelial(121;7.66e-20)|BRCA - Breast invasive adenocarcinoma(100;0.000402)|Lung(119;0.00299)|LUSC - Lung squamous cell carcinoma(224;0.00645)|GBM - Glioblastoma multiforme(43;0.237)		AGGAGCTTGTGATGGTGAGTG	0.577													27	35					0	0	0.001512	0	0
NEU4	129807	broad.mit.edu	37	2	242756224	242756224	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr2:242756224G>A	uc010fzr.2	+	3	423	c.337G>A	c.(337-339)GTG>ATG	p.V113M	NEU4_uc002wcl.2_RNA|NEU4_uc002wcm.2_Missense_Mutation_p.V113M|NEU4_uc002wcn.1_Missense_Mutation_p.V125M|NEU4_uc002wco.1_Missense_Mutation_p.V113M|NEU4_uc002wcp.1_Missense_Mutation_p.V125M	NM_080741	NP_542779	Q8WWR8	NEUR4_HUMAN	sialidase 4	113						lysosomal lumen|organelle inner membrane	exo-alpha-sialidase activity|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;3.84e-33)|all cancers(36;8.08e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.41e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0825)		GCCTGAGGCCGTGCAGATCGC	0.711													5	8					0	0	0.000602214	0	0
PAK7	57144	broad.mit.edu	37	20	9525015	9525015	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr20:9525015C>T	uc002wnl.2	-	9	2414	c.1869_splice	c.e9+1	p.E623_splice	PAK7_uc002wnk.2_Splice_Site_p.E623_splice|PAK7_uc002wnj.2_Splice_Site_p.E623_splice|PAK7_uc010gby.1_Intron	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7								ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GACCCCCTTACCTCTGTCCCA	0.542													67	69					0	0	0.000781405	0	0
ESF1	51575	broad.mit.edu	37	20	13695681	13695681	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr20:13695681C>T	uc002woj.2	-	14	2504	c.2396G>A	c.(2395-2397)CGG>CAG	p.R799Q		NM_016649	NP_057733	Q9H501	ESF1_HUMAN	ABT1-associated protein	799	Lys-rich.|Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|nucleoplasm				ovary(1)	1						TTGTTCTTTCCGTTCTCTTTG	0.393													47	93					0	0	0.000781405	0	0
TMEM90B	79953	broad.mit.edu	37	20	24565606	24565606	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr20:24565606G>A	uc002wtw.1	+	3	1228	c.595G>A	c.(595-597)GCA>ACA	p.A199T		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	199	Helical; (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						TCTGGGCATCGCAGCCTTCTA	0.617													57	54					0	0	0.000781405	0	0
MYH7B	57644	broad.mit.edu	37	20	33583241	33583241	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr20:33583241G>A	uc002xbi.1	+	26	3021	c.2929G>A	c.(2929-2931)GAT>AAT	p.D977N		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	935	Potential.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			GCGGCTGGAGGATGAGGAGGA	0.617													6	7					0	0	0.00116845	0	0
MYL9	10398	broad.mit.edu	37	20	35177484	35177484	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr20:35177484C>T	uc002xfl.1	+	4	445	c.351C>T	c.(349-351)TTC>TTT	p.F117F	uc002xfk.3_Intron|MYL9_uc002xfm.1_Silent_p.F63F	NM_006097	NP_006088	P24844	MYL9_HUMAN	myosin regulatory light chain 9 isoform a	117	EF-hand 2.				axon guidance|muscle contraction|regulation of muscle contraction	cytosol|muscle myosin complex	calcium ion binding|structural constituent of muscle				0	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				CCGCAGGTTTCATCCATGAGG	0.602													26	20					0	0	0.00178596	0	0
PTPRT	11122	broad.mit.edu	37	20	40757431	40757431	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr20:40757431T>G	uc002xkg.2	-	19	2994	c.2810A>C	c.(2809-2811)GAC>GCC	p.D937A	PTPRT_uc010ggj.2_Missense_Mutation_p.D956A|PTPRT_uc010ggi.2_Missense_Mutation_p.D140A	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	937	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				AGAGTGCGGGTCTCCATCCAG	0.537													25	37					0	0	0.000586117	0	0
TNNC2	7125	broad.mit.edu	37	20	44452684	44452684	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr20:44452684C>T	uc002xpr.2	-	5	463	c.397G>A	c.(397-399)GAA>AAA	p.E133K		NM_003279	NP_003270	P02585	TNNC2_HUMAN	fast skeletal muscle troponin C	133	EF-hand 4.				muscle filament sliding|regulation of muscle contraction|skeletal muscle contraction	cytosol|troponin complex	calcium ion binding			upper_aerodigestive_tract(1)	1		Myeloproliferative disorder(115;0.0122)				ATCAGAGATTCGATCTCCTCG	0.612													57	58					0	0	0.000781405	0	0
SYCP2	10388	broad.mit.edu	37	20	58457220	58457220	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr20:58457220C>T	uc002yaz.2	-	26	2669	c.2530G>A	c.(2530-2532)GAA>AAA	p.E844K		NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	844					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			TGAACTTTTTcctgaaaagag	0.134													15	15					0	0	0.00244969	0	0
OSBPL2	9885	broad.mit.edu	37	20	60854332	60854332	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr20:60854332T>C	uc002yck.1	+	7	813	c.611T>C	c.(610-612)CTC>CCC	p.L204P	OSBPL2_uc002ycl.1_Missense_Mutation_p.L192P|OSBPL2_uc011aah.1_Missense_Mutation_p.L112P|OSBPL2_uc002ycm.1_Missense_Mutation_p.S13P	NM_144498	NP_653081	Q9H1P3	OSBL2_HUMAN	oxysterol-binding protein-like protein 2 isoform	204					lipid transport		lipid binding			ovary(1)|central_nervous_system(1)	2	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;1.33e-06)			TACCCCAAGCTCAAGTTCTGG	0.582													3	59					0	0	0.000602214	0	0
ADRM1	11047	broad.mit.edu	37	20	60882796	60882796	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr20:60882796C>T	uc002ycn.2	+	7	848	c.768C>T	c.(766-768)GCC>GCT	p.A256A	ADRM1_uc002yco.2_Silent_p.A256A	NM_007002	NP_008933	Q16186	ADRM1_HUMAN	adhesion regulating molecule 1 precursor	256	Ser-rich.				proteasome assembly|transcription elongation from RNA polymerase II promoter	cytoplasm|integral to plasma membrane|membrane fraction|nucleus|proteasome complex	endopeptidase activator activity|protease binding|proteasome binding				0	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;2.51e-06)			GCACAGCAGCCAGCCCGACCC	0.677													12	13					0	0	0.00136819	0	0
TPTE	7179	broad.mit.edu	37	21	10951367	10951367	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr21:10951367G>A	uc002yip.1	-	10	713	c.345C>T	c.(343-345)TTC>TTT	p.F115F	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.F97F|TPTE_uc002yir.1_Silent_p.F77F|TPTE_uc010gkv.1_5'UTR	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	115					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGCTGTCAGTGAAAATTAGGT	0.308													48	109					0	0	0.000781405	0	0
KRTAP21-1	337977	broad.mit.edu	37	21	32127550	32127550	+	Silent	SNP	A	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr21:32127550A>G	uc011adi.1	-	1	147	c.147T>C	c.(145-147)GGT>GGC	p.G49G		NM_181619	NP_853650	Q3LI58	KR211_HUMAN	keratin associated protein 21-1	49						intermediate filament				breast(1)	1						cagttccataaccacagccat	0.159													54	78					0	0	0.000781405	0	0
SEC14L4	284904	broad.mit.edu	37	22	30886109	30886109	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr22:30886109G>A	uc003aid.2	-	12	1306	c.1206C>T	c.(1204-1206)CCC>CCT	p.P402P	SEC14L4_uc011akz.1_Intron|SEC14L4_uc003aie.2_Silent_p.P387P|SEC14L4_uc003aif.2_3'UTR	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	402						integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	GTGTTGGGGAGGGTCTCATCG	0.617													15	22					0	0	0.00074312	0	0
MYH9	4627	broad.mit.edu	37	22	36698686	36698686	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr22:36698686C>T	uc003apg.2	-	20	2658	c.2427G>A	c.(2425-2427)ATG>ATA	p.M809I	MYH9_uc003aph.1_Missense_Mutation_p.M673I	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	809					actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						GGAGGACCTTCATGGCGGTAA	0.572			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				33	36					0	0	0.000814825	0	0
ELFN2	114794	broad.mit.edu	37	22	37769437	37769437	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr22:37769437G>A	uc003asq.3	-	3	2924	c.2138C>T	c.(2137-2139)CCC>CTC	p.P713L		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	713	Cytoplasmic (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					GTACAGGGCGGGAAAGCTGTG	0.552													6	7					0	0	0.00116845	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120387	38120387	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr22:38120387C>T	uc003atr.2	+	7	2095	c.1824C>T	c.(1822-1824)CCC>CCT	p.P608P	TRIOBP_uc003atu.2_Silent_p.P436P|TRIOBP_uc003atq.1_Silent_p.P608P|TRIOBP_uc003ats.1_Silent_p.P436P	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	608					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GGGACAATCCCAGAGCCTCCA	0.582													28	55					0	0	0.001512	0	0
CSNK1E	1454	broad.mit.edu	37	22	38696771	38696771	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr22:38696771C>T	uc003avj.2	-	5	784	c.523G>A	c.(523-525)GGC>AGC	p.G175S	CSNK1E_uc003avk.2_Missense_Mutation_p.G175S|CSNK1E_uc003avl.1_RNA|CSNK1E_uc003avm.1_Missense_Mutation_p.G175S|CSNK1E_uc003avo.2_Missense_Mutation_p.G175S|CSNK1E_uc003avp.1_Missense_Mutation_p.G175S|CSNK1E_uc003avq.1_Missense_Mutation_p.G175S	NM_152221	NP_689407	P49674	KC1E_HUMAN	casein kinase 1 epsilon	175	Protein kinase.				DNA repair|G2/M transition of mitotic cell cycle|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|signal transduction	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Melanoma(58;0.045)					CGGGCCGTGCCGGTCAGGTTC	0.652													32	39					0	0	0.000814825	0	0
APOBEC3D	140564	broad.mit.edu	37	22	39418954	39418954	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr22:39418954C>T	uc011aoe.1	+	2	199	c.145C>T	c.(145-147)CTT>TTT	p.L49F	APOBEC3D_uc011aod.1_Missense_Mutation_p.L49F|APOBEC3D_uc011aof.1_Missense_Mutation_p.L49F|APOBEC3D_uc003awu.3_Missense_Mutation_p.L49F|APOBEC3D_uc003awt.3_Missense_Mutation_p.L49F|APOBEC3D_uc010gxu.2_5'UTR	NM_152426	NP_689639	Q96AK3	ABC3D_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	49					negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|zinc ion binding				0	Melanoma(58;0.04)					CTCAAATCTCCTTTGGGACAC	0.488													40	51					0	0	0.00222228	0	0
CENPM	79019	broad.mit.edu	37	22	42335114	42335114	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr22:42335114C>T	uc003bbn.2	-	6	557	c.489G>A	c.(487-489)CTG>CTA	p.L163L	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|CENPM_uc003bbm.2_Silent_p.L129L|CENPM_uc003bbo.2_3'UTR|CENPM_uc010gyq.2_Silent_p.L41L	NM_024053	NP_076958	Q9NSP4	CENPM_HUMAN	centromere protein M isoform a	163					mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleus					0						ACAGCAGGTTCAGAGCTGAGA	0.667													16	19					0	0	0.000422831	0	0
TTLL12	23170	broad.mit.edu	37	22	43579110	43579110	+	Missense_Mutation	SNP	C	T	T	rs143398079		TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr22:43579110C>T	uc003bdq.2	-	2	255	c.223G>A	c.(223-225)GTA>ATA	p.V75I	TTLL12_uc003bdr.1_Missense_Mutation_p.V75I	NM_015140	NP_055955	Q14166	TTL12_HUMAN	tubulin tyrosine ligase-like family, member 12	75					protein modification process		tubulin-tyrosine ligase activity			central_nervous_system(1)	1		Ovarian(80;0.221)|Glioma(61;0.222)				TCCTCTTCTACCTCCTCCACT	0.637													55	79					0	0	0.000781405	0	0
CELSR1	9620	broad.mit.edu	37	22	46761267	46761267	+	Silent	SNP	G	A	A	rs138188369	byFrequency	TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr22:46761267G>A	uc003bhw.1	-	32	8415	c.8415C>T	c.(8413-8415)TCC>TCT	p.S2805S		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	2805	Cytoplasmic (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		TATCTGAGTCGGAATCGTGGC	0.637													12	16					0	0	0.000308642	0	0
CHL1	10752	broad.mit.edu	37	3	447292	447292	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:447292C>A	uc003bou.2	+	27	3796	c.3525C>A	c.(3523-3525)TTC>TTA	p.F1175L	CHL1_uc003bot.2_Missense_Mutation_p.F1191L|CHL1_uc011asi.1_Missense_Mutation_p.F1138L	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	1175	Cytoplasmic (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		ATGGTCTCTTCAGTGAAGATG	0.478													31	11					3.90053e-15	1.40064e-14	0.0024448	1	0
DYNC1LI1	51143	broad.mit.edu	37	3	32587396	32587396	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:32587396C>T	uc003cfb.3	-	3	370	c.282G>A	c.(280-282)AAG>AAA	p.K94K	DYNC1LI1_uc011axh.1_Intron	NM_016141	NP_057225	Q9Y6G9	DC1L1_HUMAN	dynein, cytoplasmic 1, light intermediate chain	94					cell division|interspecies interaction between organisms|mitosis|positive regulation of mitotic cell cycle spindle assembly checkpoint|transport	centrosome|condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|plasma membrane|spindle pole	ATP binding|motor activity			ovary(1)	1						CTCTTCCTTTCTTATACTCCT	0.308													12	37					0	0	0.000978159	0	0
LZTFL1	54585	broad.mit.edu	37	3	45879463	45879463	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:45879463T>A	uc003cox.1	-	2	222	c.84A>T	c.(82-84)AGA>AGT	p.R28S	LZTFL1_uc003coy.1_Missense_Mutation_p.R11S|LZTFL1_uc011bak.1_Intron	NM_020347	NP_065080	Q9NQ48	LZTL1_HUMAN	leucine zipper transcription factor-like 1	28											0				BRCA - Breast invasive adenocarcinoma(193;0.00867)|KIRC - Kidney renal clear cell carcinoma(197;0.0177)|Kidney(197;0.0208)		CAGTTTTGAGTCTCAAGCCTC	0.413													33	20					0	0	0.000814825	0	0
STAB1	23166	broad.mit.edu	37	3	52549479	52549479	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:52549479C>T	uc003dej.2	+	37	3979	c.3905C>T	c.(3904-3906)TCC>TTC	p.S1302F		NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1302	Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		TCTGGCTTCTCCTTCTCCCGG	0.617													13	30					0	0	0.000308642	0	0
GNL3	26354	broad.mit.edu	37	3	52727560	52727560	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:52727560G>A	uc003dfd.2	+	12	1497	c.1324G>A	c.(1324-1326)GCC>ACC	p.A442T	GNL3_uc003dfe.2_Missense_Mutation_p.A430T|GNL3_uc003dff.2_Missense_Mutation_p.A430T	NM_014366	NP_055181	Q9BVP2	GNL3_HUMAN	guanine nucleotide binding protein-like 3	442	Intermediate (By similarity).				regulation of cell proliferation	nucleolus	GTP binding|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;6.75e-05)|Kidney(197;0.000611)|KIRC - Kidney renal clear cell carcinoma(197;0.000773)|OV - Ovarian serous cystadenocarcinoma(275;0.048)		GAGCATAAGAGGTGAGAATTG	0.468													24	67					0	0	0.00278032	0	0
ITIH4	3700	broad.mit.edu	37	3	52857968	52857968	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:52857968G>A	uc003dfz.2	-	10	1260	c.1224C>T	c.(1222-1224)GGC>GGT	p.G408G	ITIH4_uc011bel.1_Silent_p.G138G|ITIH4_uc003dfy.2_Silent_p.G272G|ITIH4_uc011bem.1_Silent_p.G408G|ITIH4_uc011ben.1_Silent_p.G408G	NM_002218	NP_002209	Q14624	ITIH4_HUMAN	inter-alpha (globulin) inhibitor H4	408	VWFA.				acute-phase response|hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		GGCTGTACCGGCCACTTACAG	0.582													18	17					0	0	0.00152264	0	0
ATXN7	6314	broad.mit.edu	37	3	63973962	63973962	+	Silent	SNP	A	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:63973962A>T	uc003dlw.3	+	9	1876	c.1323A>T	c.(1321-1323)GTA>GTT	p.V441V	ATXN7_uc003dlv.2_Silent_p.V441V|ATXN7_uc010hnv.2_Silent_p.V441V|ATXN7_uc011bfn.1_Silent_p.V296V	NM_000333	NP_000324	O15265	ATX7_HUMAN	ataxin 7 isoform a	441	Pro-rich.				cell death|histone deubiquitination|nucleus organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nuclear matrix|nucleolus	protein binding|zinc ion binding				0		Prostate(884;0.0181)		BRCA - Breast invasive adenocarcinoma(55;0.000614)|KIRC - Kidney renal clear cell carcinoma(15;0.00294)|Kidney(15;0.00305)		AGCCTTTTGTAGCTAGTAAAC	0.537													28	63					0	0	0.00106085	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806585	97806585	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:97806585C>T	uc011bgs.1	+	1	569	c.569C>T	c.(568-570)TCA>TTA	p.S190L		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTCAAAATTTCATGCAATGGT	0.313													25	59					0	0	0.000720815	0	0
MORC1	27136	broad.mit.edu	37	3	108723683	108723684	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:108723683_108723684CC>AT	uc003dxl.2	-	20	2152_2153	c.2065_2066GG>AT	c.(2065-2067)GGG>ATG	p.G689M	MORC1_uc011bhn.1_Missense_Mutation_p.G668M	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	689					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CTTCAGGCACCCTTCAGTTGGT	0.347													141	122					0	0	6.4e-05	0	0
SLC35A5	55032	broad.mit.edu	37	3	112299671	112299671	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:112299671T>C	uc003dze.2	+	6	952	c.707T>C	c.(706-708)ATT>ACT	p.I236T		NM_017945	NP_060415	Q9BS91	S35A5_HUMAN	solute carrier family 35, member A5	236	Helical; (Potential).					Golgi membrane|integral to membrane	nucleotide-sugar transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1						CATGTTCTTATTATAGTCCAG	0.403													37	35					0	0	0.000953801	0	0
MYLK	4638	broad.mit.edu	37	3	123367904	123367904	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:123367904C>T	uc003ego.2	-	26	4611	c.4329G>A	c.(4327-4329)AAG>AAA	p.K1443K	MYLK_uc010hrr.2_5'UTR|MYLK_uc011bjv.1_Silent_p.K243K|MYLK_uc011bjw.1_Silent_p.K1443K|MYLK_uc003egp.2_Silent_p.K1374K|MYLK_uc003egq.2_Silent_p.K1443K|MYLK_uc003egr.2_Silent_p.K1374K|MYLK_uc003egs.2_Silent_p.K1267K	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1443	Actin-binding (calcium/calmodulin- insensitive) (By similarity).				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		CCTCGGGCTCCTTCTCATCTG	0.542													35	64					0	0	0.00148497	0	0
PLXNA1	5361	broad.mit.edu	37	3	126707544	126707544	+	Silent	SNP	T	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:126707544T>G	uc003ejg.2	+	1	43	c.39T>G	c.(37-39)GGT>GGG	p.G13G		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	36	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CAGGCGGGGGTTCACAGCCCC	0.567													5	20					0	0	0.00198382	0	0
COL6A6	131873	broad.mit.edu	37	3	130318624	130318624	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:130318624C>T	uc010htl.2	+	19	4654	c.4623C>T	c.(4621-4623)CCC>CCT	p.P1541P	COL6A6_uc003eni.3_5'UTR	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1541	Triple-helical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GGCCAGGCCCCCCCGGGACAC	0.488													9	22					0	0	0.000978159	0	0
CEP63	80254	broad.mit.edu	37	3	134250777	134250777	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:134250777G>A	uc003eqo.1	+	5	762	c.313G>A	c.(313-315)GAA>AAA	p.E105K	CEP63_uc003eql.1_Missense_Mutation_p.E105K|CEP63_uc003eqm.2_Missense_Mutation_p.E105K|CEP63_uc003eqn.1_Missense_Mutation_p.E105K	NM_025180	NP_079456	Q96MT8	CEP63_HUMAN	centrosomal protein 63 isoform a	105	Potential.				cell division|DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitosis|signal transduction in response to DNA damage|spindle assembly	centrosome|cytosol|spindle pole	protein binding			ovary(1)	1						GAAACTACATGAAGAAGTGAG	0.358													9	26					0	0	0.000274275	0	0
GRK7	131890	broad.mit.edu	37	3	141497499	141497499	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:141497499T>G	uc011bnd.1	+	1	457	c.373T>G	c.(373-375)TTC>GTC	p.F125V		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	125	RGS.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						CCCGCAACCCTTCCTCAGCCA	0.667													14	12					0	0	0.00185496	0	0
CLRN1	7401	broad.mit.edu	37	3	150690318	150690318	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:150690318C>T	uc003eyk.1	-	1	469	c.178G>A	c.(178-180)GAA>AAA	p.E60K	CLRN1OS_uc011bny.1_Intron|CLRN1OS_uc003eyl.2_5'Flank	NM_174878	NP_777367	P58418	CLRN1_HUMAN	clarin 1 isoform a	60					equilibrioception|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	integral to membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			TACTGCATTTCACCCATAAAC	0.532													46	33					0	0	0.000680045	0	0
MME	4311	broad.mit.edu	37	3	154834527	154834527	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:154834527G>A	uc010hvr.1	+	6	725	c.514G>A	c.(514-516)GAA>AAA	p.E172K	MME_uc003fab.1_Missense_Mutation_p.E172K|MME_uc003fac.1_Missense_Mutation_p.E172K|MME_uc003fad.1_Missense_Mutation_p.E172K|MME_uc003fae.1_Missense_Mutation_p.E172K	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	172	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	AGTAGCAACAGAAAACTGGGA	0.343													12	28					0	0	0.00185496	0	0
MECOM	2122	broad.mit.edu	37	3	168834174	168834174	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:168834174G>A	uc003ffi.3	-	7	1191	c.922C>T	c.(922-924)CCT>TCT	p.P308S	MECOM_uc010hwk.1_Missense_Mutation_p.P331S|MECOM_uc003ffj.3_Missense_Mutation_p.P373S|MECOM_uc011bpi.1_Missense_Mutation_p.P309S|MECOM_uc003ffn.3_Missense_Mutation_p.P308S|MECOM_uc003ffk.2_Missense_Mutation_p.P308S|MECOM_uc003ffl.2_Missense_Mutation_p.P468S|MECOM_uc011bpj.1_Missense_Mutation_p.P496S|MECOM_uc011bpk.1_Missense_Mutation_p.P298S|MECOM_uc010hwn.2_Missense_Mutation_p.P496S	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	308					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						AAGCCGGAAGGAAACAGACCA	0.478													13	50					0	0	0.00185496	0	0
NLGN1	22871	broad.mit.edu	37	3	173998987	173998987	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:173998987C>T	uc003fio.1	+	7	2789	c.2366C>T	c.(2365-2367)CCA>CTA	p.P789L	NLGN1_uc003fip.1_Missense_Mutation_p.P789L	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	806	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			AACACTATACCAGGGATTCAG	0.483													35	29					0	0	0.00283554	0	0
MIR1248	100302143	broad.mit.edu	37	3	186504488	186504488	+	RNA	SNP	A	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:186504488A>G	hsa-mir-1248|MI0006383	+			c.28A>G			EIF4A2_uc003fqs.2_Intron|EIF4A2_uc003fqt.2_Intron|EIF4A2_uc003fqu.2_Intron|EIF4A2_uc003fqv.2_Intron|EIF4A2_uc003fqw.2_Intron|EIF4A2_uc011bsb.1_Intron|SNORA81_uc010hyv.1_RNA|SNORA63_uc010hyw.1_5'Flank|SNORA4_uc010hyx.1_5'Flank																	0						GCACTGTGCTAAAATTGCAGA	0.368													20	45					0	0	0.00121646	0	0
PCYT1A	5130	broad.mit.edu	37	3	195984731	195984731	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:195984731C>T	uc003fwg.2	-	4	318	c.145G>A	c.(145-147)GAT>AAT	p.D49N	PCYT1A_uc003fwh.2_Missense_Mutation_p.D49N	NM_005017	NP_005008	P49585	PCY1A_HUMAN	choline phosphate cytidylyltransferase 1 alpha	49						cytosol|soluble fraction	choline-phosphate cytidylyltransferase activity				0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.28e-24)|all cancers(36;1.01e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00259)	Choline(DB00122)	TCAATTTCATCAGAAAAAGGA	0.363													14	28					0	0	0.000308642	0	0
LRRC33	375387	broad.mit.edu	37	3	196381500	196381500	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:196381500C>T	uc003fwv.2	+	2	194	c.90C>T	c.(88-90)TCC>TCT	p.S30S		NM_198565	NP_940967	Q86YC3	LRC33_HUMAN	leucine rich repeat containing 33 precursor	30	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.9e-23)|all cancers(36;1.76e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00326)		CAGCAGCCTCCCAAGGAGTCT	0.557													13	37					0	0	0.00185496	0	0
RGS12	6002	broad.mit.edu	37	4	3318359	3318359	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr4:3318359G>A	uc003ggw.2	+	2	1366	c.462G>A	c.(460-462)CCG>CCA	p.P154P	RGS12_uc003ggu.2_Silent_p.P154P|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Silent_p.P154P|RGS12_uc003ggx.1_Silent_p.P154P	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	154						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		TTGAAAACCCGAGCCTTTGTG	0.428													8	32					0	0	0.000442599	0	0
PDS5A	23244	broad.mit.edu	37	4	39876033	39876033	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr4:39876033C>T	uc003guv.3	-	20	2694	c.2154_splice	c.e20-1	p.S718_splice	PDS5A_uc010ifo.2_Splice_Site_p.S678_splice	NM_001100399	NP_001093869	Q29RF7	PDS5A_HUMAN	PDS5, regulator of cohesion maintenance, homolog						cell division|mitosis|negative regulation of DNA replication	chromatin|nucleus	identical protein binding				0						AATTAAGGTCCTGCAAAAAAT	0.368													22	23					0	0	0.00278032	0	0
SULT1E1	6783	broad.mit.edu	37	4	70715154	70715154	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr4:70715154C>T	uc003heo.2	-	5	609	c.496_splice	c.e5+1	p.V166_splice	SULT1E1_uc010ihv.1_Missense_Mutation_p.G166D	NM_005420	NP_005411	P49888	ST1E1_HUMAN	estrogen sulfotransferase						3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol|nuclear membrane	estrone sulfotransferase activity|flavonol 3-sulfotransferase activity|steroid binding|steroid sulfotransferase activity			ovary(1)	1						GCTGTTCCTACCCTGTCCTTG	0.378													21	53					0	0	0.00229938	0	0
GK2	2712	broad.mit.edu	37	4	80329315	80329315	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr4:80329315C>T	uc003hlu.2	-	1	58	c.40G>A	c.(40-42)GGA>AGA	p.G14R		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	14					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						ACCACCGCTCCCACCAACGGC	0.557													8	17					0	0	0.000274275	0	0
AFF1	4299	broad.mit.edu	37	4	88048236	88048236	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr4:88048236C>T	uc003hqj.3	+	14	3256	c.2849C>T	c.(2848-2850)TCT>TTT	p.S950F	AFF1_uc011ccz.1_Missense_Mutation_p.S957F|AFF1_uc003hqk.3_Missense_Mutation_p.S950F|AFF1_uc011cda.1_Missense_Mutation_p.S588F	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	950						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		AATGGTAACTCTAAACCAGGG	0.383													84	48					0	0	0.000781405	0	0
ABCG2	9429	broad.mit.edu	37	4	89034569	89034569	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr4:89034569C>T	uc003hrg.2	-	9	1573	c.1080G>A	c.(1078-1080)AAG>AAA	p.K360K	ABCG2_uc003hrh.2_Silent_p.K360K|ABCG2_uc003hrf.2_Silent_p.K228K	NM_004827	NP_004818	Q9UNQ0	ABCG2_HUMAN	ATP-binding cassette, sub-family G, member 2	360	Cytoplasmic (Potential).				cellular iron ion homeostasis|urate metabolic process	integral to membrane|plasma membrane	ATP binding|heme transporter activity|protein homodimerization activity|xenobiotic-transporting ATPase activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;7.02e-05)	Imatinib(DB00619)|Mitoxantrone(DB01204)|Nicardipine(DB00622)|Nitrendipine(DB01054)|Rosuvastatin(DB01098)|Saquinavir(DB01232)|Topotecan(DB01030)	AGACTGTGATCTTCTTCTTCT	0.433													71	52					0	0	0.000781405	0	0
GPRIN3	285513	broad.mit.edu	37	4	90169055	90169055	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr4:90169055G>A	uc003hsm.1	-	2	2726	c.2207C>T	c.(2206-2208)TCC>TTC	p.S736F		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	736										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		AGTATCTGAGGAAATGGATCT	0.478													36	61					0	0	0.000953801	0	0
FAM190A	401145	broad.mit.edu	37	4	91645067	91645067	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr4:91645067T>G	uc003hsv.3	+	7	2275	c.1935T>G	c.(1933-1935)AGT>AGG	p.S645R	FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Missense_Mutation_p.S645R|FAM190A_uc003hsx.2_RNA	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	645										large_intestine(1)|ovary(1)	2						CCTTGCAGAGTGCAGACATGA	0.313													4	0					0	0	0.00024832	0	0
NDST3	9348	broad.mit.edu	37	4	118975867	118975867	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr4:118975867C>T	uc003ibx.2	+	2	1205	c.802C>T	c.(802-804)CAA>TAA	p.Q268*	NDST3_uc011cgf.1_Nonsense_Mutation_p.Q268*|NDST3_uc003ibw.2_Nonsense_Mutation_p.Q268*	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	268	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						TGATGGAATTCAAAGGGTTCT	0.418													45	80					0	0	0.00285205	0	0
GYPE	2996	broad.mit.edu	37	4	144797993	144797993	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr4:144797993T>C	uc003ijj.2	-	3	208	c.152A>G	c.(151-153)AAT>AGT	p.N51S	GYPE_uc010ion.2_Intron|GYPE_uc003ijk.3_Missense_Mutation_p.N51S	NM_198682	NP_941391	P15421	GLPE_HUMAN	glycophorin E precursor	51	Extracellular (Potential).					integral to plasma membrane					0	all_hematologic(180;0.158)					CGCCCACCAATTAATGAGTGT	0.358													12	11					0	0	0.00136819	0	0
CLCN3	1182	broad.mit.edu	37	4	170610194	170610194	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr4:170610194G>A	uc003isi.2	+	5	928	c.419G>A	c.(418-420)GGG>GAG	p.G140E	CLCN3_uc003ish.2_Missense_Mutation_p.G140E|CLCN3_uc011cjz.1_Missense_Mutation_p.G123E|CLCN3_uc011cka.1_Missense_Mutation_p.G140E|CLCN3_uc003isj.1_Missense_Mutation_p.G113E	NM_001829	NP_001820	P51790	CLCN3_HUMAN	chloride channel 3 isoform b	140	Helical; (By similarity).				endosomal lumen acidification	cell surface|early endosome membrane|Golgi membrane|integral to membrane|late endosome membrane|transport vesicle membrane	antiporter activity|ATP binding|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|voltage-gated chloride channel activity			breast(2)|ovary(1)	3		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0233)|LUSC - Lung squamous cell carcinoma(193;0.131)		GTTTTTATAGGGGCACTGGCC	0.423													29	77					0	0	0.00178596	0	0
C4orf27	54969	broad.mit.edu	37	4	170650819	170650819	+	Silent	SNP	A	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr4:170650819A>G	uc003isl.3	-	8	1016	c.951T>C	c.(949-951)TAT>TAC	p.Y317Y		NM_017867	NP_060337	Q9NWY4	CD027_HUMAN	hypothetical protein LOC54969	317						nucleus				ovary(1)|pancreas(1)	2		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.018)|LUSC - Lung squamous cell carcinoma(193;0.116)		TCAACAGATTATATGCAAGAG	0.358													20	39					0	0	0.000958276	0	0
AGA	175	broad.mit.edu	37	4	178352882	178352882	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr4:178352882C>T	uc003iuu.1	-	9	1083	c.1021G>A	c.(1021-1023)GAA>AAA	p.E341K	AGA_uc010irt.1_RNA	NM_000027	NP_000018	P20933	ASPG_HUMAN	aspartylglucosaminidase precursor	341					asparagine catabolic process via L-aspartate|protein deglycosylation|protein maturation	endoplasmic reticulum|intermediate filament cytoskeleton|lysosome|microtubule cytoskeleton	N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity				0		all_lung(41;1.27e-09)|Lung NSC(41;1.1e-08)|Breast(14;6.27e-05)|Melanoma(52;0.00102)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Hepatocellular(41;0.148)|all_neural(102;0.164)|Colorectal(36;0.245)		all cancers(43;1.37e-22)|Epithelial(43;3.86e-20)|OV - Ovarian serous cystadenocarcinoma(60;3.8e-11)|Colorectal(24;6.98e-05)|GBM - Glioblastoma multiforme(59;0.000362)|COAD - Colon adenocarcinoma(29;0.000462)|STAD - Stomach adenocarcinoma(60;0.0029)|LUSC - Lung squamous cell carcinoma(193;0.0328)|READ - Rectum adenocarcinoma(43;0.163)		TCCACTTTTTCCTCAGTTGGC	0.368													16	12					0	0	0.000566183	0	0
TUBB4Q	56604	broad.mit.edu	37	4	190903789	190903789	+	Silent	SNP	C	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr4:190903789C>G	uc011clg.1	-	4	1194	c.1191G>C	c.(1189-1191)ACG>ACC	p.T397T		NM_020040	NP_064424	Q99867	TBB4Q_HUMAN	tubulin, beta polypeptide 4, member Q	398					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;4.1e-31)|Epithelial(3;1.44e-30)|OV - Ovarian serous cystadenocarcinoma(60;2.03e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00839)|READ - Rectum adenocarcinoma(43;0.155)		TGCCCTCGCCCGTGTACCAGT	0.552													3	47					0	0	6.4e-05	0	0
NKD2	85409	broad.mit.edu	37	5	1034434	1034434	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:1034434G>A	uc003jbt.1	+	6	420	c.415G>A	c.(415-417)GTC>ATC	p.V139I	NKD2_uc010itf.1_Missense_Mutation_p.V139I	NM_033120	NP_149111	Q969F2	NKD2_HUMAN	naked cuticle homolog 2	139	Targeting to the basolateral cell membrane.|EF-hand.|Potential.|Interaction with DVL1, DVL2 and DVL3 (By similarity).				exocytosis|Wnt receptor signaling pathway	cytoplasmic membrane-bounded vesicle|plasma membrane	calcium ion binding|ubiquitin protein ligase binding				0	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;3.28e-09)		Epithelial(17;0.00093)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00417)|Lung(60;0.165)			CTGCGGGAAGGTCACCAGGGA	0.612													13	15					0	0	0.000308642	0	0
SLC6A19	340024	broad.mit.edu	37	5	1201811	1201811	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:1201811C>T	uc003jbw.3	+	1	102	c.46C>T	c.(46-48)CCG>TCG	p.P16S		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	16	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CGCCCGGATCCCGTCCCTGGC	0.677													7	9					0	0	0.000157383	0	0
SLC6A3	6531	broad.mit.edu	37	5	1414876	1414876	+	Silent	SNP	G	A	A	rs28363072		TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:1414876G>A	uc003jck.2	-	8	1207	c.1086C>T	c.(1084-1086)TTC>TTT	p.F362F		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	362	Helical; Name=7; (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	AGAAGACGACGAAGCCGGAGG	0.617													16	17					0	0	0.000958276	0	0
DNAH5	1767	broad.mit.edu	37	5	13769624	13769624	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:13769624C>T	uc003jfd.2	-	57	9748	c.9706G>A	c.(9706-9708)GAT>AAT	p.D3236N	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3236	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCGGCTTTATCGTTGGCCACT	0.418									Kartagener_syndrome				34	52					0	0	0.00111076	0	0
DNAH5	1767	broad.mit.edu	37	5	13780959	13780959	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:13780959G>A	uc003jfd.2	-	53	8972	c.8930C>T	c.(8929-8931)TCC>TTC	p.S2977F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2977	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GATCTGGAAGGAAACGTAGCC	0.488									Kartagener_syndrome				9	17					0	0	0.000442599	0	0
NPR3	4883	broad.mit.edu	37	5	32780897	32780897	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:32780897C>T	uc003jhv.2	+	5	1483	c.1265C>T	c.(1264-1266)ACT>ATT	p.T422I	NPR3_uc010iuo.2_Missense_Mutation_p.T206I|NPR3_uc011cnz.1_Missense_Mutation_p.T206I|NPR3_uc003jhu.2_Missense_Mutation_p.T422I	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	422	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	ATTGCCATGACTGATGTGGAG	0.557													45	70					0	0	0.000781405	0	0
SPEF2	79925	broad.mit.edu	37	5	35654808	35654808	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:35654808A>C	uc003jjo.2	+	7	1069	c.958A>C	c.(958-960)ATA>CTA	p.I320L	SPEF2_uc003jjn.1_Missense_Mutation_p.I320L|SPEF2_uc003jjq.3_Missense_Mutation_p.I320L	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	320					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GGACCAGTTAATAGCCCACGA	0.378													14	20					0	0	0.000566183	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41000352	41000352	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:41000352C>T	uc003jmj.3	-	39	4942	c.4452G>A	c.(4450-4452)AGG>AGA	p.R1484R	HEATR7B2_uc003jmi.3_Silent_p.R1039R	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1484							binding			ovary(6)|central_nervous_system(2)	8						TGTAGAAATCCCTGGCCCTTG	0.502													23	31					0	0	0.000586117	0	0
MIER3	166968	broad.mit.edu	37	5	56219569	56219569	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:56219569G>A	uc003jrd.1	-	12	1169	c.1144C>T	c.(1144-1146)CCT>TCT	p.P382S	MIER3_uc003jqz.1_Missense_Mutation_p.P319S|MIER3_uc003jra.1_Missense_Mutation_p.P381S|MIER3_uc003jrb.1_Missense_Mutation_p.P206S|MIER3_uc003jrc.1_Missense_Mutation_p.P387S	NM_152622	NP_689835	Q7Z3K6	MIER3_HUMAN	mesoderm induction early response 1, family	382					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		Lung NSC(810;4.65e-05)|Prostate(74;0.0253)|Breast(144;0.0503)|Ovarian(174;0.223)		OV - Ovarian serous cystadenocarcinoma(10;1.24e-37)		TGTTGATCAGGAATAGGCTCA	0.418													66	37					0	0	0.000781405	0	0
SLC30A5	64924	broad.mit.edu	37	5	68412402	68412402	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:68412402G>A	uc003jvh.2	+	10	1455	c.1254G>A	c.(1252-1254)CAG>CAA	p.Q418Q	SLC30A5_uc003jvj.2_RNA|SLC30A5_uc003jvk.2_Silent_p.Q147Q|SLC30A5_uc003jvi.2_Silent_p.Q247Q	NM_022902	NP_075053	Q8TAD4	ZNT5_HUMAN	solute carrier family 30 (zinc transporter),	418	Cytoplasmic (Potential).				cellular zinc ion homeostasis|cobalt ion transport|regulation of proton transport|response to zinc ion	apical plasma membrane|Golgi apparatus|integral to plasma membrane|membrane fraction|secretory granule membrane	zinc ion binding|zinc ion transmembrane transporter activity			central_nervous_system(1)	1		Lung NSC(167;0.000986)|Prostate(74;0.00809)|Colorectal(97;0.0508)|Ovarian(174;0.16)		OV - Ovarian serous cystadenocarcinoma(47;1.24e-56)|Epithelial(20;1.12e-52)|all cancers(19;2.63e-48)|Lung(70;0.0177)		ACTCTAGGCAGATCTTTTACT	0.323													40	13					0	0	0.00222228	0	0
VCAN	1462	broad.mit.edu	37	5	82837738	82837738	+	Silent	SNP	A	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:82837738A>C	uc003kii.3	+	8	9272	c.8916A>C	c.(8914-8916)ACA>ACC	p.T2972T	VCAN_uc003kij.3_Silent_p.T1985T|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Silent_p.T1636T	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2972	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		AAGGTGCTACACAGTGGCCAC	0.483													33	34					0	0	0.000814825	0	0
GPR98	84059	broad.mit.edu	37	5	90040914	90040914	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:90040914C>T	uc003kju.2	+	51	10697	c.10601C>T	c.(10600-10602)TCG>TTG	p.S3534L	GPR98_uc003kjt.2_Missense_Mutation_p.S1240L|GPR98_uc003kjv.2_Missense_Mutation_p.S1134L	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3534	EAR 6.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGCTGGAATTCGGAGCGTAAT	0.388													93	343					0	0	0.000781405	0	0
C5orf24	134553	broad.mit.edu	37	5	134190754	134190754	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:134190754G>A	uc003kzx.2	+	2	225	c.164G>A	c.(163-165)AGG>AAG	p.R55K	C5orf24_uc003kzy.3_Missense_Mutation_p.R55K|C5orf24_uc003kzz.2_Missense_Mutation_p.R55K	NM_152409	NP_689622	Q7Z6I8	CE024_HUMAN	hypothetical protein LOC134553	55											0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GTTTGTCAGAGGCAAGACCCA	0.403													39	88					0	0	0.00170553	0	0
PCDHA5	56143	broad.mit.edu	37	5	140201883	140201883	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:140201883G>A	uc003lhl.2	+	1	523	c.523G>A	c.(523-525)GAA>AAA	p.E175K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.E175K|PCDHA5_uc003lhj.1_Missense_Mutation_p.E175K	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	175	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAATCCAAACGAATATTTTGA	0.388													36	7					0	0	0.00283554	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140801371	140801371	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:140801371C>T	uc003lkq.1	+	1	835	c.577C>T	c.(577-579)CCA>TCA	p.P193S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Missense_Mutation_p.P193S|PCDHGA11_uc003lkp.1_Missense_Mutation_p.P193S	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	193	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCCAAGAATCCAGAGCTAGT	0.567													18	8					0	0	0.000958276	0	0
TCERG1	10915	broad.mit.edu	37	5	145826961	145826962	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:145826961_145826962GG>AA	uc003lob.2	+	1	89_90	c.49_50GG>AA	c.(49-51)GGG>AAG	p.G17K	TCERG1_uc003loc.2_Missense_Mutation_p.G17K|TCERG1_uc011dbt.1_Missense_Mutation_p.G17K	NM_006706	NP_006697	O14776	TCRG1_HUMAN	transcription elongation regulator 1 isoform 1	17					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			ovary(1)|skin(1)	2		Lung NSC(249;0.00188)|all_lung(500;0.00307)|all_neural(839;0.0424)|Breast(839;0.0743)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATTCAACCCGGGGGAGCTCAGG	0.649													7	11					0	0	6.4e-05	0	0
HK3	3101	broad.mit.edu	37	5	176309021	176309021	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:176309021C>T	uc003mfa.2	-	16	2253	c.2161G>A	c.(2161-2163)GAT>AAT	p.D721N	HK3_uc003mez.2_Missense_Mutation_p.D277N	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	721	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGAGAGCCATCGTCCCCAAAG	0.642													56	32					0	0	0.000781405	0	0
DDX41	51428	broad.mit.edu	37	5	176940758	176940758	+	Silent	SNP	G	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:176940758G>C	uc003mho.2	-	10	1047	c.1026C>G	c.(1024-1026)GCC>GCG	p.A342A	DDX41_uc003mhm.2_Silent_p.A122A|DDX41_uc003mhn.2_Silent_p.A211A|DDX41_uc003mhp.2_Silent_p.A211A|DDX41_uc003mhq.1_Silent_p.A122A	NM_016222	NP_057306	Q9UJV9	DDX41_HUMAN	DEAD-box protein abstrakt	342	Helicase ATP-binding.				apoptosis|multicellular organismal development	catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding|zinc ion binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			CCTCGTCCAGGGCCAGGTAGC	0.627													9	57					0	0	0.000673444	0	0
OR11A1	26531	broad.mit.edu	37	6	29394760	29394760	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr6:29394760G>A	uc003nmg.2	-	1	750	c.659C>T	c.(658-660)GCC>GTC	p.A220V		NM_013937	NP_039225	Q9GZK7	O11A1_HUMAN	olfactory receptor, family 11, subfamily A,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CACAATTCTGGCATAAGATGT	0.522													19	15					0	0	0.00074312	0	0
MEP1A	4224	broad.mit.edu	37	6	46800919	46800919	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr6:46800919G>A	uc010jzh.1	+	11	1295	c.1253G>A	c.(1252-1254)GGA>GAA	p.G418E	MEP1A_uc011dwg.1_Missense_Mutation_p.G140E|MEP1A_uc011dwh.1_Missense_Mutation_p.G446E|MEP1A_uc011dwi.1_Missense_Mutation_p.G318E	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	418	Extracellular (Potential).|MAM.				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			TCAACTGGGGGAATTTACCTA	0.512													30	36					0	0	0.00127121	0	0
LRRC1	55227	broad.mit.edu	37	6	53706942	53706942	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr6:53706942G>A	uc003pcd.1	+	2	471	c.194G>A	c.(193-195)GGA>GAA	p.G65E		NM_018214	NP_060684	Q9BTT6	LRRC1_HUMAN	leucine rich repeat containing 1	65	LRR 3.					cytoplasm|membrane				ovary(1)	1	Lung NSC(77;0.0147)			BRCA - Breast invasive adenocarcinoma(397;0.0745)		CGAAAGCTTGGACTTAGTGAT	0.368													14	48					0	0	0.00074312	0	0
FAM83B	222584	broad.mit.edu	37	6	54804969	54804970	+	Silent	DNP	CC	TT	TT			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr6:54804969_54804970CC>TT	uc003pck.2	+	5	1316_1317	c.1200_1201CC>TT	c.(1198-1203)CTCCTG>CTTTTG	p.400_401LL>LL		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	400_401										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TGCCATACCTCCTGCTTAATAG	0.441													52	34					0	0	6.4e-05	0	0
CD109	135228	broad.mit.edu	37	6	74493476	74493477	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr6:74493476_74493477AC>TT	uc003php.2	+	19	2577_2578	c.2152_2153AC>TT	c.(2152-2154)ACT>TTT	p.T718F	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Missense_Mutation_p.T718F|CD109_uc010kba.2_Missense_Mutation_p.T641F	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	718						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						TGATTCTATCACTTCTTGGGTG	0.366													31	15					0	0	6.4e-05	0	0
BCLAF1	9774	broad.mit.edu	37	6	136597050	136597050	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr6:136597050A>T	uc003qgx.1	-	5	1866	c.1613T>A	c.(1612-1614)ATA>AAA	p.I538K	BCLAF1_uc003qgw.1_Missense_Mutation_p.I365K|BCLAF1_uc003qgy.1_Missense_Mutation_p.I536K|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.I536K	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	538					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		ATCACTCGCTATCATTTTGAT	0.423													31	134					0	0	0.00178596	0	0
SYTL3	94120	broad.mit.edu	37	6	159086619	159086619	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr6:159086619G>A	uc003qrp.2	+	4	547	c.303G>A	c.(301-303)TGG>TGA	p.W101*	SYTL3_uc011efp.1_Nonsense_Mutation_p.W101*|SYTL3_uc003qro.2_Nonsense_Mutation_p.W101*|SYTL3_uc003qrq.2_Nonsense_Mutation_p.W101*|SYTL3_uc003qrr.2_Nonsense_Mutation_p.W101*|SYTL3_uc003qrs.2_Nonsense_Mutation_p.W101*|SYTL3_uc011efq.1_5'UTR	NM_001009991	NP_001009991	Q4VX76	SYTL3_HUMAN	synaptotagmin-like 3	101	RabBD.				intracellular protein transport	endomembrane system|membrane	Rab GTPase binding				0		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.54e-17)|BRCA - Breast invasive adenocarcinoma(81;8.24e-06)		CCCATGCCTGGAAGTGCACGG	0.642													3	1					0	0	0.00024832	0	0
RASA4P	401331	broad.mit.edu	37	7	44069176	44069176	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr7:44069176G>A	uc011kbk.1	-	8	948	c.843C>T	c.(841-843)AGC>AGT	p.S281S	RASA4P_uc003tji.2_RNA|RASA4P_uc010kxx.2_RNA	NM_006989	NP_008920			RAS p21 protein activator 4 isoform 1												0						CTTTGCCAGGGCTCGTGGGCA	0.697													3	1					0	0	6.4e-05	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72658179	72658179	+	Missense_Mutation	SNP	T	C	C	rs147293416	by1000genomes	TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr7:72658179T>C	uc003txs.1	-	13	1733	c.805A>G	c.(805-807)AAA>GAA	p.K269E	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						cagagtgatttcggatgaatt	0													3	5					0	0	0.00024832	0	0
ZNF804B	219578	broad.mit.edu	37	7	88962967	88962967	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr7:88962967C>T	uc011khi.1	+	4	1209	c.671C>T	c.(670-672)TCC>TTC	p.S224F		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	224						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			TTTACTTTTTCCAAAAAAGTG	0.353										HNSCC(36;0.09)			17	33					0	0	0.00074312	0	0
SAMD9	54809	broad.mit.edu	37	7	92732256	92732256	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr7:92732256G>A	uc003umf.2	-	3	3411	c.3155C>T	c.(3154-3156)TCC>TTC	p.S1052F	SAMD9_uc003umg.2_Missense_Mutation_p.S1052F	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1052						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			AATAAATGGGGAAAACCAATT	0.383													28	56					0	0	0.00178596	0	0
ST7	7982	broad.mit.edu	37	7	116869938	116869938	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr7:116869938A>C	uc011knn.1	+	14	1470	c.1465A>C	c.(1465-1467)ACC>CCC	p.T489P	ST7_uc003vio.2_3'UTR|ST7_uc003viq.2_3'UTR|ST7_uc011knm.1_3'UTR|ST7_uc003vir.2_3'UTR	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	Error:Variant_position_missing_in_Q9NRC1_after_alignment						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		CACTCACCTCACCCGCCGCTG	0.507													7	41					0	0	0.00111076	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117424487	117424487	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr7:117424487G>A	uc003vjf.2	-	5	2182	c.2090C>T	c.(2089-2091)CCT>CTT	p.P697L		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	697										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		CATTAGCAAAGGGGTTAGGGA	0.507													90	5					0	0	0.000781405	0	0
ATP6V1F	9296	broad.mit.edu	37	7	128502964	128502964	+	Silent	SNP	G	C	C			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr7:128502964G>C	uc003voc.1	+	1	67	c.6G>C	c.(4-6)GCG>GCC	p.A2A	KCP_uc003vob.1_RNA	NM_004231	NP_004222	Q16864	VATF_HUMAN	ATPase, H+ transporting, lysosomal 14kD, V1	2					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|membrane fraction|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATPase activity, uncoupled|hydrogen ion transporting ATP synthase activity, rotational mechanism|protein binding|proton-transporting ATPase activity, rotational mechanism			ovary(1)	1						CAGGGATGGCGGGGAGGGGTA	0.642													3	26					0	0	6.4e-05	0	0
PTN	5764	broad.mit.edu	37	7	136938300	136938300	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr7:136938300C>G	uc003vtq.2	-	3	563	c.200G>C	c.(199-201)CGG>CCG	p.R67P	PTN_uc010lmx.2_Missense_Mutation_p.R67P|PTN_uc003vtr.1_Missense_Mutation_p.R67P	NM_002825	NP_002816	P21246	PTN_HUMAN	pleiotrophin	67					nervous system development|positive regulation of cell division|positive regulation of cell proliferation|transmembrane receptor protein tyrosine phosphatase signaling pathway	endoplasmic reticulum|extracellular space	growth factor activity|heparin binding|protein phosphatase inhibitor activity			upper_aerodigestive_tract(1)|pancreas(1)	2						AGTGCCCTCCCGTGTGCCCAG	0.522													3	47					0	0	6.4e-05	0	0
KIAA1549	57670	broad.mit.edu	37	7	138554416	138554416	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr7:138554416G>A	uc011kql.1	-	14	4692	c.4643C>T	c.(4642-4644)CCG>CTG	p.P1548L	KIAA1549_uc011kqi.1_Missense_Mutation_p.P332L|KIAA1549_uc003vuk.3_Missense_Mutation_p.P1498L|KIAA1549_uc011kqj.1_Missense_Mutation_p.P1548L|KIAA1549_uc011kqk.1_Missense_Mutation_p.P332L	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1548						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						GTCTACCACCGGGAACTCGTA	0.637			O	BRAF	pilocytic astrocytoma								9	12					0	0	0.000274275	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				68	4					0	0	0.000781405	0	0
TAS2R5	54429	broad.mit.edu	37	7	141490305	141490305	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr7:141490305C>T	uc003vwr.1	+	1	289	c.144C>T	c.(142-144)ATC>ATT	p.I48I		NM_018980	NP_061853	Q9NYW4	TA2R5_HUMAN	taste receptor T2R5	48	Helical; Name=2; (Potential).				chemosensory behavior|sensory perception of taste		taste receptor activity				0	Melanoma(164;0.0171)					ACCTCATTATCCTGGGCCTGG	0.448													70	5					0	0	0.000781405	0	0
DLGAP2	9228	broad.mit.edu	37	8	1581039	1581039	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr8:1581039C>T	uc003wpl.2	+	5	1494	c.1397C>T	c.(1396-1398)TCC>TTC	p.S466F	DLGAP2_uc003wpm.2_Missense_Mutation_p.S466F	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	545					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		GTGTGCGAGTCCGTCTTCAGT	0.582													15	6					0	0	0.000566183	0	0
USP17L2	377630	broad.mit.edu	37	8	11996079	11996079	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr8:11996079G>A	uc003wvc.1	-	1	191	c.191C>T	c.(190-192)CCC>CTC	p.P64L	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	64					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						CTTCTTCCTGGGAGCAAGCTG	0.567													41	129					0	0	0.00222228	0	0
ADAM7	8756	broad.mit.edu	37	8	24350737	24350737	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr8:24350737G>A	uc003xeb.2	+	16	1950	c.1837G>A	c.(1837-1839)GGA>AGA	p.G613R	ADAM7_uc003xec.2_Missense_Mutation_p.G385R	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	613	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		ATGTGGAGAGGGAATGGTAAG	0.368													13	19					0	0	0.00136819	0	0
RB1CC1	9821	broad.mit.edu	37	8	53569134	53569134	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr8:53569134C>T	uc003xre.3	-	15	3813	c.3255G>A	c.(3253-3255)CAG>CAA	p.Q1085Q	RB1CC1_uc003xrf.3_Silent_p.Q1085Q	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	1085	Potential.				autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				AGGTCTCCTTCTGCTGGGCTC	0.358													35	49					0	0	0.00283554	0	0
RP1	6101	broad.mit.edu	37	8	55538985	55538985	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr8:55538985G>A	uc003xsd.1	+	4	2691	c.2543G>A	c.(2542-2544)AGA>AAA	p.R848K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	848					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GGGTATTTGAGAGGAATGGCA	0.348													28	31					0	0	0.00127121	0	0
HNF4G	3174	broad.mit.edu	37	8	76465432	76465432	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr8:76465432G>A	uc003yaq.2	+	6	774	c.504G>A	c.(502-504)CAG>CAA	p.Q168Q	HNF4G_uc003yar.2_Silent_p.Q205Q	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	168					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			TGGATGATCAGGTACACATTT	0.318													35	53					0	0	0.000814825	0	0
RNF19A	25897	broad.mit.edu	37	8	101300197	101300197	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr8:101300197G>A	uc003yjj.1	-	3	523	c.206C>T	c.(205-207)TCC>TTC	p.S69F	RNF19A_uc003yjk.1_Missense_Mutation_p.S69F|RNF19A_uc003yjl.1_Missense_Mutation_p.S69F	NM_015435	NP_056250	Q9NV58	RN19A_HUMAN	ring finger protein 19	69					microtubule cytoskeleton organization|protein modification process	centrosome|integral to membrane	ligase activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(14;3.5e-05)|all_epithelial(15;8.91e-08)|Lung NSC(17;0.000615)|all_lung(17;0.00166)		Epithelial(11;3.06e-11)|all cancers(13;5.78e-09)|OV - Ovarian serous cystadenocarcinoma(57;2.24e-05)|STAD - Stomach adenocarcinoma(118;0.0525)			CCGAAACAGGGAGCCTATTGA	0.418													60	84					0	0	0.000781405	0	0
SYBU	55638	broad.mit.edu	37	8	110631220	110631220	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr8:110631220G>A	uc003ynj.3	-	3	441	c.278C>T	c.(277-279)CCC>CTC	p.P93L	SYBU_uc003yni.3_Missense_Mutation_p.P90L|SYBU_uc003ynk.3_5'UTR|SYBU_uc010mco.2_Missense_Mutation_p.P92L|SYBU_uc003ynl.3_Missense_Mutation_p.P92L|SYBU_uc010mcp.2_Missense_Mutation_p.P93L|SYBU_uc010mcq.2_Missense_Mutation_p.P93L|SYBU_uc003yno.3_5'UTR|SYBU_uc010mcr.2_Missense_Mutation_p.P93L|SYBU_uc003ynm.3_Missense_Mutation_p.P92L|SYBU_uc003ynn.3_Missense_Mutation_p.P92L|SYBU_uc010mcs.2_5'UTR|SYBU_uc010mct.2_Missense_Mutation_p.P93L|SYBU_uc010mcu.2_Missense_Mutation_p.P92L|SYBU_uc003ynp.3_Missense_Mutation_p.P25L|SYBU_uc010mcv.2_Missense_Mutation_p.P93L	NM_001099754	NP_001093224	Q9NX95	SYBU_HUMAN	Golgi-localized syntaphilin-related protein	93	Sufficient for interaction with KIF5B.|Ser-rich.					cytoplasmic membrane-bounded vesicle|cytoskeleton|Golgi membrane|integral to membrane				ovary(1)	1						AGCATCTGAGGGTGTCTTCAC	0.463													24	112					0	0	0.00047179	0	0
TRPS1	7227	broad.mit.edu	37	8	116616406	116616406	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr8:116616406G>A	uc003ynz.2	-	3	2210	c.1751C>T	c.(1750-1752)CCG>CTG	p.P584L	TRPS1_uc011lhy.1_Missense_Mutation_p.P588L|TRPS1_uc003yny.2_Missense_Mutation_p.P597L|TRPS1_uc010mcy.2_Missense_Mutation_p.P584L	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	584					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			ACAAGCAAACGGATAAGTAAT	0.468									Langer-Giedion_syndrome				20	66					0	0	0.00152264	0	0
ADCY8	114	broad.mit.edu	37	8	131859707	131859707	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr8:131859707G>A	uc003ytd.3	-	11	2721	c.2465C>T	c.(2464-2466)TCC>TTC	p.S822F	ADCY8_uc010mds.2_Intron	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	822					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CACAGCTGAGGAATTGAAAGT	0.348										HNSCC(32;0.087)			36	87					0	0	0.000680045	0	0
KCNQ3	3786	broad.mit.edu	37	8	133141683	133141683	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr8:133141683A>T	uc003ytj.2	-	15	2670	c.2445T>A	c.(2443-2445)GAT>GAA	p.D815E	KCNQ3_uc010mdt.2_Missense_Mutation_p.D803E|uc003yti.2_5'Flank	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	815					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CGAACACATAATCATCTCTGT	0.607													18	29					0	0	0.00121646	0	0
LRRC6	23639	broad.mit.edu	37	8	133669119	133669119	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr8:133669119C>T	uc003ytk.2	-	3	287	c.213G>A	c.(211-213)TTG>TTA	p.L71L	LRRC6_uc003ytl.2_RNA	NM_012472	NP_036604	Q86X45	LRRC6_HUMAN	leucine rich repeat containing 6	71	LRR 3.					cytoplasm				ovary(1)|kidney(1)	2	Ovarian(258;0.00352)|Esophageal squamous(12;0.00507)|all_neural(3;0.0052)|Medulloblastoma(3;0.0922)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			AAGCTAAATTCAAATATTCAA	0.229													6	31					0	0	0.000157383	0	0
TG	7038	broad.mit.edu	37	8	134144060	134144060	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr8:134144060G>A	uc003ytw.2	+	46	7908	c.7867G>A	c.(7867-7869)GAG>AAG	p.E2623K	TG_uc010mdw.2_Missense_Mutation_p.E1382K|TG_uc011ljb.1_Missense_Mutation_p.E992K|TG_uc011ljc.1_Missense_Mutation_p.E756K	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2623					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TCTCAGCCTGGAGCTGCTGGC	0.458													39	57					0	0	0.00170553	0	0
PTPRD	5789	broad.mit.edu	37	9	8338947	8338947	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr9:8338947C>T	uc003zkk.2	-	42	6065	c.5354G>A	c.(5353-5355)AGG>AAG	p.R1785K	PTPRD_uc003zkp.2_Missense_Mutation_p.R1379K|PTPRD_uc003zkq.2_Missense_Mutation_p.R1378K|PTPRD_uc003zkr.2_Missense_Mutation_p.R1369K|PTPRD_uc003zks.2_Missense_Mutation_p.R1378K|PTPRD_uc003zkl.2_Missense_Mutation_p.R1776K|PTPRD_uc003zkm.2_Missense_Mutation_p.R1772K|PTPRD_uc003zkn.2_Missense_Mutation_p.R1374K|PTPRD_uc003zko.2_Missense_Mutation_p.R1375K	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1785	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CTTGAATTCCCTTAGGATATA	0.448										TSP Lung(15;0.13)			57	10					0	0	0.000781405	0	0
NFIB	4781	broad.mit.edu	37	9	14120611	14120611	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr9:14120611C>T	uc003zle.2	-	8	1508	c.1073G>A	c.(1072-1074)CGA>CAA	p.R358Q	NFIB_uc003zld.2_Missense_Mutation_p.R106Q|NFIB_uc003zlf.2_Missense_Mutation_p.R358Q|NFIB_uc011lmo.1_Missense_Mutation_p.R358Q	NM_005596	NP_005587	O00712	NFIB_HUMAN	nuclear factor I/B	358					anterior commissure morphogenesis|chondrocyte differentiation|Clara cell differentiation|commissural neuron axon guidance|DNA replication|glial cell differentiation|lung ciliated cell differentiation|negative regulation of DNA binding|negative regulation of epithelial cell proliferation involved in lung morphogenesis|negative regulation of mesenchymal cell proliferation involved in lung development|positive regulation of transcription from RNA polymerase II promoter|principal sensory nucleus of trigeminal nerve development|Type I pneumocyte differentiation|Type II pneumocyte differentiation	cerebellar mossy fiber|nucleolus|nucleus	RNA polymerase II transcription corepressor activity|sequence-specific DNA binding RNA polymerase II transcription factor activity				0				GBM - Glioblastoma multiforme(50;4.4e-08)|LUAD - Lung adenocarcinoma(58;0.119)|Lung(218;0.164)		AGGTGGAGTTCGAGTTGAGAT	0.458			T	MYB|HGMA2	adenoid cystic carcinoma|lipoma								10	2					0	0	0.000442599	0	0
TMC1	117531	broad.mit.edu	37	9	75403334	75403334	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr9:75403334G>A	uc004aiz.1	+	14	1504	c.964G>A	c.(964-966)GAC>AAC	p.D322N	TMC1_uc010moz.1_Missense_Mutation_p.D280N|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_Missense_Mutation_p.D176N|TMC1_uc010mpa.1_Missense_Mutation_p.D176N	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	322	Cytoplasmic (Potential).				sensory perception of sound	integral to membrane				ovary(1)	1						TACCAGCTGGGACTACCTGAT	0.398													27	37					0	0	0.00106085	0	0
SPIN1	10927	broad.mit.edu	37	9	91077425	91077425	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr9:91077425G>T	uc010mqj.2	+	4	616	c.116G>T	c.(115-117)AGT>ATT	p.S39I	SPIN1_uc004apy.2_Missense_Mutation_p.S39I|SPIN1_uc004apz.2_Missense_Mutation_p.S39I|SPIN1_uc010mqk.2_Missense_Mutation_p.S39I	NM_006717	NP_006708	Q9Y657	SPIN1_HUMAN	spindlin	39					cell cycle|gamete generation|multicellular organismal development	nucleus	methylated histone residue binding				0						CATCGGAGCAGTGTGGGTCCG	0.498													31	56					4.62619e-21	1.67072e-20	0.000814825	1	0
WNK2	65268	broad.mit.edu	37	9	96051722	96051722	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr9:96051722G>A	uc004ati.1	+	20	4797	c.4797G>A	c.(4795-4797)CAG>CAA	p.Q1599Q	WNK2_uc011lud.1_Silent_p.Q1562Q|WNK2_uc004atj.2_Silent_p.Q1562Q|WNK2_uc004atk.2_Silent_p.Q1199Q|WNK2_uc004atl.1_Silent_p.Q157Q	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1599					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						TGCTCTACCAGGAGCACGTGC	0.677													21	11					0	0	0.000878237	0	0
PTGS1	5742	broad.mit.edu	37	9	125146022	125146022	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr9:125146022C>T	uc004bmg.1	+	8	1132	c.997C>T	c.(997-999)CTC>TTC	p.L333F	PTGS1_uc011lys.1_Missense_Mutation_p.L308F|PTGS1_uc010mwb.1_Missense_Mutation_p.L224F|PTGS1_uc004bmf.1_Missense_Mutation_p.L333F|PTGS1_uc004bmh.1_Missense_Mutation_p.L224F|PTGS1_uc011lyt.1_Missense_Mutation_p.L224F	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	333					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	GACGACCCGCCTCATCCTCAT	0.597													17	23					0	0	0.00121646	0	0
OR1J2	26740	broad.mit.edu	37	9	125273649	125273649	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr9:125273649C>T	uc004bmj.1	+	4	1424	c.569C>T	c.(568-570)TCA>TTA	p.S190L	OR1J2_uc011lyv.1_Missense_Mutation_p.S190L	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						CTGTCCTGCTCAGATATCTTC	0.532													44	37					0	0	0.000680045	0	0
FAM129B	64855	broad.mit.edu	37	9	130269197	130269197	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr9:130269197A>T	uc004brh.2	-	14	2370	c.2168T>A	c.(2167-2169)GTG>GAG	p.V723E	FAM129B_uc004bri.2_Missense_Mutation_p.V710E|FAM129B_uc004brj.3_3'UTR	NM_022833	NP_073744	Q96TA1	NIBL1_HUMAN	hypothetical protein LOC64855 isoform 1	723							protein binding				0						GGGGCTGGACACCTGCTCTCC	0.672													31	50					0	0	0.00283554	0	0
FAM129B	64855	broad.mit.edu	37	9	130270444	130270444	+	Silent	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr9:130270444C>T	uc004brh.2	-	12	1672	c.1470G>A	c.(1468-1470)AGG>AGA	p.R490R	FAM129B_uc004bri.2_Silent_p.R477R|FAM129B_uc004brj.3_Silent_p.R490R	NM_022833	NP_073744	Q96TA1	NIBL1_HUMAN	hypothetical protein LOC64855 isoform 1	490							protein binding				0						CCCGGAAGAACCTCTTCCGCA	0.627													31	28					0	0	0.00058488	0	0
GLT6D1	360203	broad.mit.edu	37	9	138517996	138517996	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr9:138517996C>T	uc010nbd.1	-	4	430	c.176G>A	c.(175-177)GGG>GAG	p.G59E		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	59	Lumenal (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		GTCGAAAGTCCCTTCCCATAG	0.507													23	29					0	0	0.000586117	0	0
CACNA1B	774	broad.mit.edu	37	9	140809147	140809147	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr9:140809147C>T	uc004cog.2	+	5	809	c.664C>T	c.(664-666)CCA>TCA	p.P222S		NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	222	Cytoplasmic (Potential).|I.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GGCCATGGTTCCACTCCTGCA	0.547													12	11					0	0	0.00136819	0	0
SLC35A2	7355	broad.mit.edu	37	X	48762211	48762211	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chrX:48762211G>A	uc004dlo.1	-	4	979	c.975C>T	c.(973-975)GCC>GCT	p.A325A	SLC35A2_uc011mml.1_Silent_p.A338A|SLC35A2_uc004dlp.1_Silent_p.A325A|SLC35A2_uc011mmm.1_Silent_p.A353A|SLC35A2_uc011mmn.1_Silent_p.A264A|SLC35A2_uc004dlr.1_Missense_Mutation_p.P179L|SLC35A2_uc004dlq.2_Intron	NM_005660	NP_005651	P78381	S35A2_HUMAN	solute carrier family 35, member A2 isoform a	325	Helical; (Potential).				galactose metabolic process	Golgi membrane|integral to membrane|nucleus	sugar:hydrogen symporter activity|UDP-galactose transmembrane transporter activity			breast(1)	1						CAGCGCCAAGGGCAAATAATG	0.587													9	4					0	0	0.000442599	0	0
XIST	7503	broad.mit.edu	37	X	73071669	73071669	+	RNA	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chrX:73071669C>T	uc004ebm.1	-	1		c.920G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GGCCACTTTTCCTCCACAATC	0.473													51	9					0	0	0.000781405	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962468	73962468	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chrX:73962468G>T	uc004eby.2	-	3	2541	c.1924C>A	c.(1924-1926)CCA>ACA	p.P642T		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	642					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TCAATGGATGGGATTCTTTGA	0.403													14	3					2.32078e-09	8.2633e-09	0.000308642	1	0
CYLC1	1538	broad.mit.edu	37	X	83128980	83128980	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chrX:83128980G>A	uc004eei.1	+	4	1285	c.1264G>A	c.(1264-1266)GAA>AAA	p.E422K	CYLC1_uc004eeh.1_Missense_Mutation_p.E421K	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	422	5.				cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity	p.E421K(1)		ovary(4)|skin(1)	5						TCAGAAAGATGAAAAAAAGGA	0.343													12	1					0	0	0.00185496	0	0
ZNF711	7552	broad.mit.edu	37	X	84526439	84526439	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chrX:84526439C>T	uc004eeo.2	+	9	2238	c.1891C>T	c.(1891-1893)CCT>TCT	p.P631S	ZNF711_uc004eep.2_Missense_Mutation_p.P631S|ZNF711_uc004eeq.2_Missense_Mutation_p.P677S|ZNF711_uc011mqy.1_Missense_Mutation_p.P230S	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	631	C2H2-type 8.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						TTTTCATCGTCCTTCTGAGCT	0.403													26	0					0	0	0.000720815	0	0
CT47B1	643311	broad.mit.edu	37	X	120009363	120009363	+	Silent	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chrX:120009363G>A	uc011muc.1	-	1	417	c.162C>T	c.(160-162)GTC>GTT	p.V54V		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	54											0						CGGGCCCTGCGACTCCGACCA	0.736													30	5					0	0	0.00209593	0	0
ACTRT1	139741	broad.mit.edu	37	X	127186092	127186092	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chrX:127186092G>A	uc004eum.2	-	1	291	c.94C>T	c.(94-96)CGC>TGC	p.R32C		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	32						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						ATGACATGGCGGGGTCCAATC	0.448													44	7					0	0	0.0025221	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994617	140994617	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chrX:140994617C>T	uc004fbt.2	+	4	1713	c.1427C>T	c.(1426-1428)TCT>TTT	p.S476F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	476							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTTCCCCAGTCTCCTCTCCAG	0.468										HNSCC(15;0.026)			101	11					0	0	0.000781405	0	0
ARID2	196528	broad.mit.edu	37	12	46285865	46285891	+	Splice_Site	DEL	GAAGTCTTCTACCAAGTAAGGAAAATG	-	-	rs150531382		TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr12:46285865_46285891delGAAGTCTTCTACCAAGTAAGGAAAATG	uc001ros.1	+	18	5147	c.5147_splice	c.e18+1	p.K1716_splice	ARID2_uc001ror.2_Splice_Site_p.K1716_splice|ARID2_uc009zkg.1_Splice_Site_p.K1172_splice|ARID2_uc009zkh.1_Splice_Site_p.K1343_splice|ARID2_uc001rou.1_Splice_Site_p.K1050_splice	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)						chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		CAGGAAGTCAGAAGTCTTCTACCAAGTAAGGAAAATGAGTTTACTTC	0.326													4	6	---	---	---	---					
CHD2	1106	broad.mit.edu	37	15	93444495	93444497	+	In_Frame_Del	DEL	GAG	-	-			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr15:93444495_93444497delGAG	uc002bsp.2	+	2	603_605	c.28_30delGAG	c.(28-30)GAGdel	p.E11del	CHD2_uc002bsm.1_In_Frame_Del_p.E11del|CHD2_uc002bsn.2_In_Frame_Del_p.E11del|CHD2_uc002bso.1_In_Frame_Del_p.E11del	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	11					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			CAAAAGCCAAGAGGAGGACAGTT	0.399													11	10	---	---	---	---					
SRP68	6730	broad.mit.edu	37	17	74041436	74041436	+	Frame_Shift_Del	DEL	A	-	-			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr17:74041436delA	uc002jqk.1	-	12	1366	c.1331delT	c.(1330-1332)TTAfs	p.L444fs	SRP68_uc010wsu.1_Frame_Shift_Del_p.L343fs|SRP68_uc002jql.1_Frame_Shift_Del_p.L406fs|SRP68_uc002jqj.1_Frame_Shift_Del_p.L105fs	NM_014230	NP_055045	Q9UHB9	SRP68_HUMAN	signal recognition particle 68kDa	444					response to drug	cytosol|endoplasmic reticulum|nucleolus|ribosome|signal recognition particle, endoplasmic reticulum targeting	RNA binding|signal recognition particle binding			ovary(1)	1						GTCTTCCTCTAAACCAGGAAG	0.448													66	101	---	---	---	---					
DNMT1	1786	broad.mit.edu	37	19	10262139	10262139	+	Frame_Shift_Del	DEL	T	-	-			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:10262139delT	uc002mng.2	-	23	2332	c.2152delA	c.(2152-2154)ATGfs	p.M718fs	DNMT1_uc010xlc.1_Frame_Shift_Del_p.M734fs|DNMT1_uc002mnh.2_Frame_Shift_Del_p.M613fs|DNMT1_uc010xld.1_Frame_Shift_Del_p.M718fs	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	718					chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	CCCTGGTGCATTTTTTTGGGT	0.507													8	255	---	---	---	---					
GLTSCR1	29998	broad.mit.edu	37	19	48185390	48185390	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr19:48185390delC	uc002phh.3	+	7	2458	c.2264delC	c.(2263-2265)TCCfs	p.S755fs	GLTSCR1_uc002phi.3_Frame_Shift_Del_p.S513fs	NM_015711	NP_056526	Q9NZM4	GSCR1_HUMAN	glioma tumor suppressor candidate region gene 1	755							protein binding			pancreas(3)	3		all_cancers(25;1.8e-07)|all_lung(116;5.73e-06)|Lung NSC(112;9.69e-06)|all_epithelial(76;2.42e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		all cancers(93;0.000358)|OV - Ovarian serous cystadenocarcinoma(262;0.000576)|Epithelial(262;0.0212)|GBM - Glioblastoma multiforme(486;0.0355)		AGCCAGGCTTCCCCGGCTCCG	0.741													2	4	---	---	---	---					
UMODL1	89766	broad.mit.edu	37	21	43531807	43531808	+	Frame_Shift_Ins	INS	-	C	C	rs220130	by1000genomes	TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr21:43531807_43531808insC	uc002zaf.1	+	12	2091_2092	c.2091_2092insC	c.(2089-2094)AAGACCfs	p.K697fs	UMODL1_uc002zad.1_Frame_Shift_Ins_p.K625fs|UMODL1_uc002zae.1_Frame_Shift_Ins_p.K753fs|UMODL1_uc002zag.1_Frame_Shift_Ins_p.K825fs	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	697_698	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						CAGCTCTGAAGACCCCCGCCTG	0.589													7	11	---	---	---	---					
UBA5	79876	broad.mit.edu	37	3	132379489	132379489	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr3:132379489delC	uc003epa.3	+	1	350	c.108delC	c.(106-108)GGCfs	p.G36fs	NPHP3_uc003eoz.1_Intron|UBA5_uc010htr.2_Intron|UBA5_uc010htt.2_Frame_Shift_Del_p.G36fs|UBA5_uc003epb.3_5'Flank|ACAD11_uc003eov.3_5'Flank|ACAD11_uc003eoy.2_5'Flank|UBA5_uc010hts.1_RNA	NM_024818	NP_079094	Q9GZZ9	UBA5_HUMAN	ubiquitin-activating enzyme 5 isoform 1	36					protein ufmylation	aggresome|cytoplasm|cytoplasm|nucleus	ATP binding|cofactor binding|metal ion binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|protein binding|UFM1 activating enzyme activity			kidney(1)	1						GAGGGGGCGGCCGGGTCCGCA	0.682													2	4	---	---	---	---					
PPARGC1B	133522	broad.mit.edu	37	5	149216399	149216400	+	In_Frame_Ins	INS	-	CAG	CAG			TCGA-FS-A1ZD-06A-11D-A197-08	TCGA-FS-A1ZD-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ea666b7-2b6e-4df8-9a9d-b8265b9749b4	de373850-b2ca-457e-a345-c7634a1dd4fa	g.chr5:149216399_149216400insCAG	uc003lrc.2	+	8	2423_2424	c.2381_2382insCAG	c.(2380-2382)GAC>GACAGC	p.799_800insS	PPARGC1B_uc003lrb.1_In_Frame_Ins_p.799_800insS|PPARGC1B_uc003lrd.2_In_Frame_Ins_p.760_761insS|PPARGC1B_uc003lrf.2_In_Frame_Ins_p.778_779insS|PPARGC1B_uc003lre.1_In_Frame_Ins_p.778_779insS	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	799_800	Glu-rich.				estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			GTCTTTGAAGACAGCAGCAGCA	0.450													53	49	---	---	---	---					
