Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SCNN1D	6339	broad.mit.edu	37	1	1221515	1221515	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr1:1221515C>T	uc001adu.1	+	6	900	c.276C>T	c.(274-276)TCC>TCT	p.S92S	SCNN1D_uc001adt.1_Silent_p.S256S|SCNN1D_uc001adw.2_Silent_p.S158S|SCNN1D_uc001adx.2_5'UTR|SCNN1D_uc001adv.2_Silent_p.S92S	NM_002978	NP_002969			sodium channel, nonvoltage-gated 1, delta												0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.01e-35)|OV - Ovarian serous cystadenocarcinoma(86;2.46e-21)|Colorectal(212;0.000157)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00229)|BRCA - Breast invasive adenocarcinoma(365;0.00251)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.034)|Lung(427;0.199)		GGCTGCTGTCCCTGGGAGCCC	0.677000													9	11					0	0	0.058154	0	0
PGD	5226	broad.mit.edu	37	1	10479478	10479478	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr1:10479478C>T	uc001arc.2	+	12	1304	c.1214C>T	c.(1213-1215)TCC>TTC	p.S405F	PGD_uc001ard.2_Missense_Mutation_p.S325F|PGD_uc010oak.1_Missense_Mutation_p.S383F|PGD_uc010oal.1_Missense_Mutation_p.S392F	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	405					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		GCTCAGGACTCCTGGCGGCGG	0.522000													42	59					0	0	0.131918	0	0
MST1P2	11209	broad.mit.edu	37	1	16974666	16974666	+	RNA	SNP	C	T	T	rs28503658	by1000genomes	TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr1:16974666C>T	uc010och.1	+	7		c.1126C>T			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CCAGATCCGGCGTTGTACAGA	0.697000													4	32					0	0	0.047766	0	0
DPYD	1806	broad.mit.edu	37	1	97981303	97981303	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr1:97981303G>A	uc001drv.2	-	13	1856	c.1719C>T	c.(1717-1719)ACC>ACT	p.T573T		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	573					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	AGAAAGTTTTGGTGAGGGCAA	0.333000													35	38					0	0	0.080422	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458000	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			70	84					6.88731e-43	8.28474e-43	0.139131	1	0
C1orf161	126868	broad.mit.edu	37	1	116675835	116675835	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr1:116675835G>A	uc001egc.1	+	7	1203	c.938G>A	c.(937-939)AGG>AAG	p.R313K		NM_152367	NP_689580	Q8N8X9	MB213_HUMAN	hypothetical protein LOC126868	313											0	Lung SC(450;0.184)	all_cancers(81;0.00142)|all_lung(203;0.000139)|all_epithelial(167;0.000401)|Lung NSC(69;0.000705)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		CGCCTGGTGAGGAAACTGCAC	0.512000													28	28					0	0	0.125774	0	0
C1orf9	51430	broad.mit.edu	37	1	172546697	172546697	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr1:172546697A>G	uc001giq.3	+	12	1598	c.1282A>G	c.(1282-1284)AAG>GAG	p.K428E	C1orf9_uc010pmm.1_Missense_Mutation_p.K428E|C1orf9_uc009wwd.2_Intron|C1orf9_uc010pmn.1_Missense_Mutation_p.K391E|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	428	SUN.				multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		CAAGTACATAAAGGTTAGCAA	0.318000													19	32					0	0	0.043863	0	0
PPFIA4	8497	broad.mit.edu	37	1	203015491	203015491	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr1:203015491G>A	uc009xaj.2	+	13	1562	c.1562G>A	c.(1561-1563)AGA>AAA	p.R521K	PPFIA4_uc010pqf.1_Missense_Mutation_p.R81K			O75335	LIPA4_HUMAN	SubName: Full=Liprin alpha4;	Error:Variant_position_missing_in_O75335_after_alignment					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						CTGGCCCAGAGAATTGCAGCC	0.652000													4	7					0	0	0.009096	0	0
VN1R5	317705	broad.mit.edu	37	1	247419455	247419455	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr1:247419455C>T	uc010pyu.1	+	1	82	c.82C>T	c.(82-84)CTT>TTT	p.L28F		NM_173858	NP_776257	Q7Z5H4	VN1R5_HUMAN	vomeronasal 1 receptor 5	28	Cytoplasmic (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0	all_cancers(71;5.7e-05)|all_epithelial(71;1.03e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0607)|Lung NSC(105;0.0661)	all_cancers(173;0.0314)	OV - Ovarian serous cystadenocarcinoma(106;0.00854)			CACAGATATCCTTTGCTTTAA	0.328000													48	66					0	0	0.124865	0	0
OR2T12	127064	broad.mit.edu	37	1	248458416	248458416	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr1:248458416G>A	uc010pzj.1	-	1	465	c.465C>T	c.(463-465)CTC>CTT	p.L155L		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			CAGCCTGCAGGAGGCCGTCAG	0.607000													43	47					0	0	0.131918	0	0
KLF6	1316	broad.mit.edu	37	10	3824211	3824211	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr10:3824211C>G	uc001iha.2	-	2	565	c.298G>C	c.(298-300)GAG>CAG	p.E100Q	KLF6_uc010qaj.1_Missense_Mutation_p.E100Q|KLF6_uc010qak.1_RNA|KLF6_uc010qal.1_Missense_Mutation_p.E100Q|KLF6_uc001ihb.2_Missense_Mutation_p.E100Q	NM_001300	NP_001291	Q99612	KLF6_HUMAN	Kruppel-like factor 6 isoform A	100					B cell differentiation	nucleus	zinc ion binding			central_nervous_system(3)|lung(1)	4				Colorectal(1;0.238)		CTGTTGGTCTCTAAGTTGTAA	0.507000											OREG0019980	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	121	119					0	0	0.139131	0	0
KIAA1217	56243	broad.mit.edu	37	10	24508690	24508690	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr10:24508690T>C	uc001iru.3	+	2	609	c.206T>C	c.(205-207)CTA>CCA	p.L69P	KIAA1217_uc001irs.2_5'UTR|KIAA1217_uc001irt.3_Missense_Mutation_p.L69P|KIAA1217_uc010qcy.1_Missense_Mutation_p.L69P|KIAA1217_uc010qcz.1_Missense_Mutation_p.L69P	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	69					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AGACACACCCTAGGGGGGCCC	0.502000													27	44					0	0	0.116897	0	0
ARMC4	55130	broad.mit.edu	37	10	28270414	28270414	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr10:28270414G>A	uc009xky.2	-	7	1015	c.917C>T	c.(916-918)TCA>TTA	p.S306L	ARMC4_uc010qds.1_5'UTR|ARMC4_uc010qdt.1_5'UTR|ARMC4_uc001itz.2_Missense_Mutation_p.S306L|ARMC4_uc010qdu.1_5'UTR	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	306							binding			ovary(4)|skin(2)	6						CATATTTTCTGAAAATTTTGG	0.289000													38	52					0	0	0.074837	0	0
TMEM26	219623	broad.mit.edu	37	10	63170314	63170314	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr10:63170314C>T	uc001jlo.2	-	6	1242	c.873G>A	c.(871-873)GCG>GCA	p.A291A	TMEM26_uc010qij.1_RNA|TMEM26_uc001jlp.1_RNA	NM_178505	NP_848600	Q6ZUK4	TMM26_HUMAN	transmembrane protein 26	291	Helical; (Potential).					integral to membrane					0	Prostate(12;0.0112)					GGAAGTTCTTCGCGGCAAAGA	0.507000													19	32					0	0	0.038395	0	0
ZNF365	22891	broad.mit.edu	37	10	64159311	64159311	+	Silent	SNP	A	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr10:64159311A>T	uc001jly.3	+	5	1094	c.1032A>T	c.(1030-1032)GTA>GTT	p.V344V	ZNF365_uc001jmb.3_Intron|ZNF365_uc001jmc.2_Intron|ZNF365_uc001jlz.3_Silent_p.V329V|ZNF365_uc001jma.3_RNA	NM_014951	NP_055766	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform A	Error:Variant_position_missing_in_Q70YC4_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					CGCATTCGGTATGTAACCACC	0.502000													75	79					0	0	0.139131	0	0
CDH23	64072	broad.mit.edu	37	10	73437212	73437212	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr10:73437212G>A	uc001jrx.3	+	15	1892	c.1515_splice	c.e15-1	p.R505_splice	CDH23_uc001jry.2_Splice_Site_p.R121_splice|CDH23_uc001jrz.2_Splice_Site_p.R121_splice	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor						calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GCCTGGCACAGGTTCTCGCTG	0.577000													3	6					0	0	0.115264	0	0
LRIT1	26103	broad.mit.edu	37	10	85991885	85991885	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr10:85991885C>T	uc001kcz.1	-	4	1692	c.1670G>A	c.(1669-1671)CGA>CAA	p.R557Q		NM_015613	NP_056428	Q9P2V4	LRIT1_HUMAN	retina specific protein PAL	557	Cytoplasmic (Potential).					integral to endoplasmic reticulum membrane					0						GAAGCACTTTCGGCAGCGCTT	0.567000													27	19					0	0	0.091800	0	0
WAPAL	23063	broad.mit.edu	37	10	88211815	88211815	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr10:88211815G>A	uc001kdo.2	-	15	3465	c.3023C>T	c.(3022-3024)TCG>TTG	p.S1008L	WAPAL_uc009xsv.2_Intron|WAPAL_uc001kdn.2_Missense_Mutation_p.S1045L|WAPAL_uc009xsw.2_Missense_Mutation_p.S1002L	NM_015045	NP_055860	Q7Z5K2	WAPL_HUMAN	wings apart-like homolog	1008	WAPL.				cell division|interspecies interaction between organisms|mitosis|negative regulation of chromatin binding|negative regulation of DNA replication|negative regulation of sister chromatid cohesion|protein localization to chromatin|regulation of cohesin localization to chromatin	chromatin|cohesin complex|cytoplasm	protein binding			ovary(1)	1						AAAAGAGCACGATGTTTCCAT	0.423000													27	33					0	0	0.099896	0	0
TBC1D12	23232	broad.mit.edu	37	10	96201752	96201752	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr10:96201752G>A	uc001kjr.2	+	2	1256	c.1071G>A	c.(1069-1071)CAG>CAA	p.Q357Q		NM_015188	NP_056003	O60347	TBC12_HUMAN	TBC1 domain family, member 12	357				Q -> G (in Ref. 3; CAB43225).		intracellular	Rab GTPase activator activity				0		Colorectal(252;0.0429)				AGAATCTTCAGAAAACATCCA	0.328000													18	27					0	0	0.049695	0	0
CYP2C19	1557	broad.mit.edu	37	10	96535148	96535148	+	Silent	SNP	A	G	G			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr10:96535148A>G	uc010qnz.1	+	3	333	c.333A>G	c.(331-333)GGA>GGG	p.G111G	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Silent_p.G89G	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	111					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TCCTGTTAGGAATCGTTTTCA	0.532000													38	34					0	0	0.080422	0	0
ABCC8	6833	broad.mit.edu	37	11	17498277	17498277	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr11:17498277C>A	uc001mnc.2	-	1	173	c.47G>T	c.(46-48)CGG>CTG	p.R16L	ABCC8_uc010rcy.1_Missense_Mutation_p.R16L	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	16	Extracellular (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CTGGTCCACCCGGTAGGCGGC	0.682000													5	238					0.00116845	0.00132851	0.021553	1	0
SLC17A6	57084	broad.mit.edu	37	11	22384288	22384288	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr11:22384288C>G	uc001mqk.2	+	6	1078	c.665C>G	c.(664-666)TCC>TGC	p.S222C		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	222	Helical; (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						ACTTTAGGTTCCTATGCCGGA	0.403000													3	72					0	0	0.115264	0	0
FSHB	2488	broad.mit.edu	37	11	30255226	30255226	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr11:30255226C>T	uc001msl.2	+	3	338	c.269C>T	c.(268-270)TCC>TTC	p.S90F	FSHB_uc001msm.2_Missense_Mutation_p.S90F|FSHB_uc001msn.2_Missense_Mutation_p.S90F	NM_000510	NP_000501	P01225	FSHB_HUMAN	follicle stimulating hormone, beta polypeptide	90					cellular nitrogen compound metabolic process|female gamete generation|female pregnancy|ovarian follicle development|peptide hormone processing|progesterone biosynthetic process|spermatogenesis|transforming growth factor beta receptor signaling pathway	cytoplasm|extracellular region|soluble fraction	follicle-stimulating hormone activity|protein heterodimerization activity			ovary(3)	3					Follitropin beta(DB00066)|Thyrotropin Alfa(DB00024)|Urofollitropin(DB00094)	CATGCAGATTCCTTGTATACA	0.537000													34	35					0	0	0.064281	0	0
CCDC73	493860	broad.mit.edu	37	11	32636297	32636297	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr11:32636297C>T	uc001mtv.2	-	16	1611	c.1567G>A	c.(1567-1569)GAA>AAA	p.E523K		NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	523										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					TTGTCTTTTTCCAAGCATATC	0.318000													36	57					0	0	0.080422	0	0
PRR5L	79899	broad.mit.edu	37	11	36467960	36467960	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr11:36467960G>A	uc001mwo.3	+	7	944	c.555G>A	c.(553-555)TCG>TCA	p.S185S	PRR5L_uc001mwp.2_Silent_p.S185S|PRR5L_uc009ykk.2_Intron|PRR5L_uc010rfc.1_Silent_p.S185S	NM_001160167	NP_001153639	Q6MZQ0	PRR5L_HUMAN	protor-2 isoform a	185										ovary(1)	1						AGCTGCCCTCGTCCATTGTCC	0.587000													24	29					0	0	0.108266	0	0
LRRC4C	57689	broad.mit.edu	37	11	40137376	40137376	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr11:40137376C>T	uc001mxa.1	-	2	2431	c.467G>A	c.(466-468)CGA>CAA	p.R156Q	LRRC4C_uc001mxc.1_Missense_Mutation_p.R152Q|LRRC4C_uc001mxd.1_Missense_Mutation_p.R152Q|LRRC4C_uc001mxb.1_Missense_Mutation_p.R152Q	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	156	LRR 4.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				GGGGTTGTTTCGCAACCAGAG	0.428000													21	53					0	0	0.062417	0	0
PYGM	5837	broad.mit.edu	37	11	64522219	64522219	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr11:64522219G>A	uc001oax.3	-	8	1762	c.945C>T	c.(943-945)TCC>TCT	p.S315S	PYGM_uc001oay.3_Silent_p.S227S	NM_005609	NP_005600	P11217	PYGM_HUMAN	muscle glycogen phosphorylase isoform 1	315					glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			ovary(2)	2					Pyridoxal Phosphate(DB00114)	AGCCGAACTTGGAAGACTTGA	0.587000													11	19					0	0	0.080935	0	0
SLC22A20	440044	broad.mit.edu	37	11	65003966	65003966	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr11:65003966G>A	uc010roc.1	+	9	1348	c.1345G>A	c.(1345-1347)GAG>AAG	p.E449K	SLC22A20_uc001odi.3_RNA	NM_001004326	NP_001004326	A6NK97	S22AK_HUMAN	solute carrier family 22, member 20	449	Helical; (Potential).				ion transport	integral to membrane	transmembrane transporter activity			central_nervous_system(1)	1						GTTTACCGGCGAGCTGTACCC	0.637000													7	12					0	0	0.038147	0	0
TPCN2	219931	broad.mit.edu	37	11	68822718	68822718	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr11:68822718G>A	uc001oos.2	+	4	443	c.327G>A	c.(325-327)GCG>GCA	p.A109A	TPCN2_uc009ysk.1_RNA|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Silent_p.A109A	NM_139075	NP_620714	Q8NHX9	TPC2_HUMAN	two pore segment channel 2	109	Extracellular (Potential).				cellular calcium ion homeostasis|smooth muscle contraction	endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated calcium channel activity				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CCAGCACGGCGGACGTGCGCT	0.587000													35	61					0	0	0.050027	0	0
CEP164	22897	broad.mit.edu	37	11	117241991	117241991	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr11:117241991C>T	uc001prc.2	+	9	1108	c.961C>T	c.(961-963)CCT>TCT	p.P321S	CEP164_uc001prb.2_Missense_Mutation_p.P321S|CEP164_uc010rxk.1_Missense_Mutation_p.P295S|CEP164_uc001prf.2_RNA|CEP164_uc009yzp.1_RNA	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	321					cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		GAAGAGTGAACCTAAGATTTG	0.527000													83	11					0	0	0.139131	0	0
TMPRSS13	84000	broad.mit.edu	37	11	117789273	117789273	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr11:117789273G>A	uc001prs.1	-	2	395	c.302C>T	c.(301-303)TCC>TTC	p.S101F	TMPRSS13_uc009yzr.1_5'UTR|TMPRSS13_uc001prt.1_5'UTR|TMPRSS13_uc001pru.1_Missense_Mutation_p.S101F	NM_001077263	NP_001070731	Q9BYE2	TMPSD_HUMAN	transmembrane protease, serine 13	96	Cytoplasmic (Potential).				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			pancreas(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.00106)		TGACCTGCCGGATGAGGACCT	0.627000													19	6					0	0	0.043863	0	0
OR8B12	219858	broad.mit.edu	37	11	124412728	124412728	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr11:124412728G>A	uc010sam.1	-	1	823	c.823C>T	c.(823-825)CTG>TTG	p.L275L		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	275	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		GTATAGAACAGGGAGGACACT	0.433000													36	1					0	0	0.059317	0	0
WNK1	65125	broad.mit.edu	37	12	988854	988854	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr12:988854C>T	uc001qio.3	+	11	2996	c.2489C>T	c.(2488-2490)CCG>CTG	p.P830L	WNK1_uc001qip.3_Intron|WNK1_uc001qir.3_Intron	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	830					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			GTGGGACAGCCGCTCCCTACT	0.542000													67	85					0	0	0.139131	0	0
GALNT8	26290	broad.mit.edu	37	12	4835834	4835834	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr12:4835834G>A	uc001qne.1	+	2	440	c.348G>A	c.(346-348)ATG>ATA	p.M116I		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	116	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						AAACCCAAATGAAACTCTTCC	0.498000													15	17					0	0	0.119110	0	0
PLBD1	79887	broad.mit.edu	37	12	14659974	14659974	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr12:14659974A>C	uc001rcc.1	-	9	1426	c.1265T>G	c.(1264-1266)CTG>CGG	p.L422R		NM_024829	NP_079105	Q6P4A8	PLBL1_HUMAN	phospholipase B domain containing 1	422					lipid catabolic process	extracellular region	hydrolase activity				0						GTCCAAGCCCAGCTTCTGAAC	0.443000													53	51					0	0	0.139131	0	0
C12orf77	196415	broad.mit.edu	37	12	25148886	25148886	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr12:25148886A>G	uc001rgf.2	-	3	467	c.262T>C	c.(262-264)TGC>CGC	p.C88R		NM_001101339	NP_001094809	C9JDV5	CL097_HUMAN	hypothetical protein LOC196415	88											0						TTCTGGTGGCATTCGGGGGCA	0.507000													23	31					0	0	0.076483	0	0
ALG10	84920	broad.mit.edu	37	12	34179315	34179315	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr12:34179315C>T	uc001rlm.2	+	3	1206	c.887C>T	c.(886-888)TCA>TTA	p.S296L		NM_032834	NP_116223	Q5BKT4	AG10A_HUMAN	asparagine-linked glycosylation 10 homolog	296	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			skin(1)	1	Lung NSC(5;3.82e-05)|Acute lymphoblastic leukemia(23;0.0142)|all_hematologic(23;0.0429)	Lung NSC(34;0.204)|all_lung(34;0.235)				TACTTTTTTTCATTTACTCTC	0.348000													47	80					0	0	0.139131	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50191101	50191101	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr12:50191101G>A	uc009zlk.2	-	8	744	c.542C>T	c.(541-543)TCC>TTC	p.S181F	NCKAP5L_uc001rvc.3_5'Flank|NCKAP5L_uc001rvb.2_5'UTR	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	177	Pro-rich.									central_nervous_system(1)	1						AAGGAACGGGGATAGGGCATC	0.647000													13	20					0	0	0.105934	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54930811	54930811	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr12:54930811G>A	uc001sgc.3	+	29	3236	c.3157G>A	c.(3157-3159)GAA>AAA	p.E1053K	NCKAP1L_uc010sox.1_Missense_Mutation_p.E595K|NCKAP1L_uc010soy.1_Missense_Mutation_p.E1003K	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	1053					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						CAAGAACATTGAAACTCACCT	0.403000													33	52					0	0	0.080422	0	0
STAB2	55576	broad.mit.edu	37	12	103984724	103984724	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr12:103984724G>A	uc001tjw.2	+	2	317	c.131G>A	c.(130-132)CGA>CAA	p.R44Q		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	44	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						ACCGAGTGCCGATCCTGCGCT	0.433000													31	37					0	0	0.134883	0	0
DAO	1610	broad.mit.edu	37	12	109278890	109278891	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr12:109278890_109278891GG>TA	uc001tnr.3	+	2	261_262	c.108_109GG>TA	c.(106-111)GCGGAC>GCTAAC	p.D37N	DAO_uc001tnq.3_Missense_Mutation_p.D37N|DAO_uc009zvb.2_RNA|DAO_uc001tns.3_RNA	NM_001917	NP_001908	P14920	OXDA_HUMAN	D-amino-acid oxidase	37	FAD.				glyoxylate metabolic process	peroxisomal matrix	binding|D-amino-acid oxidase activity			ovary(1)|skin(1)	2						AGGTCTACGCGGACCGCTTCAC	0.624000													44	52					0	0	0.115264	0	0
CCDC60	160777	broad.mit.edu	37	12	119968748	119968748	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr12:119968748G>A	uc001txe.2	+	13	1896	c.1431G>A	c.(1429-1431)GTG>GTA	p.V477V	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	477										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		AGATCCTGGTGAAACTGCAGA	0.498000													51	50					0	0	0.139131	0	0
NCOR2	9612	broad.mit.edu	37	12	124856917	124856917	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr12:124856917G>A	uc010tba.1	-	20	2575	c.2458C>T	c.(2458-2460)CCT>TCT	p.P820S	NCOR2_uc010tay.1_Missense_Mutation_p.P820S|NCOR2_uc010taz.1_Missense_Mutation_p.P803S|NCOR2_uc010tbb.1_Missense_Mutation_p.P820S|NCOR2_uc010tbc.1_Missense_Mutation_p.P802S|NCOR2_uc001ugj.1_Missense_Mutation_p.P820S	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	820	Pro-rich.				cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GGGACCACAGGAGGAGGTGCA	0.716000													7	10					0	0	0.029380	0	0
SACS	26278	broad.mit.edu	37	13	23915199	23915199	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr13:23915199G>A	uc001uon.2	-	10	3405	c.2816C>T	c.(2815-2817)TCC>TTC	p.S939F	SACS_uc001uoo.2_Missense_Mutation_p.S792F|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	939					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TGTATAAGAGGAAATTCCCTG	0.363000													66	41					0	0	0.139131	0	0
MYO16	23026	broad.mit.edu	37	13	109379904	109379904	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr13:109379904C>T	uc001vqt.1	+	4	540	c.414C>T	c.(412-414)AAC>AAT	p.N138N	MYO16_uc010agk.1_Silent_p.N160N	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	138	ANK 3.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CCTGCGATAACCCTGATATTG	0.403000													53	33					0	0	0.139131	0	0
OR4K14	122740	broad.mit.edu	37	14	20483000	20483000	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr14:20483000G>A	uc010tky.1	-	1	353	c.353C>T	c.(352-354)TCC>TTC	p.S118F		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	118	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		ATAGGCCATGGAAACCAGGAG	0.468000													27	25					0	0	0.091800	0	0
KIAA0317	9870	broad.mit.edu	37	14	75142897	75142897	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr14:75142897G>A	uc001xqb.2	-	7	1284	c.779C>T	c.(778-780)TCA>TTA	p.S260L	KIAA0317_uc010tut.1_Missense_Mutation_p.S99L|KIAA0317_uc001xqc.2_Missense_Mutation_p.S260L	NM_001039479	NP_001034568	O15033	K0317_HUMAN	hypothetical protein LOC9870	260					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|intracellular	ubiquitin-protein ligase activity			ovary(2)|kidney(1)|central_nervous_system(1)|pancreas(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00404)		ATTTTGGTATGAAATGCAAGC	0.408000													22	4					0	0	0.062417	0	0
TMEM63C	57156	broad.mit.edu	37	14	77702977	77702977	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr14:77702977C>T	uc001xtf.2	+	9	765	c.553C>T	c.(553-555)CTG>TTG	p.L185L	TMEM63C_uc010asq.1_Silent_p.L185L	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	185	Helical; (Potential).					integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		GAGCAAGCTCCTGTGGCTGCA	0.582000													36	10					0	0	0.069456	0	0
DICER1	23405	broad.mit.edu	37	14	95571499	95571499	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr14:95571499G>A	uc001ydw.2	-	21	3360	c.3178C>T	c.(3178-3180)CGC>TGC	p.R1060C	DICER1_uc010avh.1_5'UTR|DICER1_uc001ydv.2_Missense_Mutation_p.R1050C|DICER1_uc001ydx.2_Missense_Mutation_p.R1060C|DICER1_uc001ydy.1_5'Flank	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	1060					negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		CAGTGAAGGCGATAAAGTATG	0.498000			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				6	86					0	0	0.029380	0	0
ADAM6	8755	broad.mit.edu	37	14	107219125	107219125	+	RNA	SNP	T	C	C			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr14:107219125T>C	uc010tyt.1	-	11		c.690A>G								Parts of antibodies, mostly variable regions.												0						CAGCCCAAACTCCATGGTGAG	0.502000													52	16					0	0	0.139131	0	0
THAP10	56906	broad.mit.edu	37	15	71174870	71174870	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr15:71174870C>T	uc002asv.2	-	3	839	c.697G>A	c.(697-699)GAT>AAT	p.D233N	LRRC49_uc002asu.2_Intron	NM_020147	NP_064532	Q9P2Z0	THA10_HUMAN	THAP domain containing 10	233							DNA binding|metal ion binding			ovary(1)|skin(1)	2						CAGTCTGTATCTGTTTCTGAA	0.383000													54	79					0	0	0.139131	0	0
ACAN	176	broad.mit.edu	37	15	89402420	89402420	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr15:89402420C>T	uc010upo.1	+	12	6978	c.6604C>T	c.(6604-6606)CTG>TTG	p.L2202L	ACAN_uc010upp.1_Silent_p.L2202L|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2202					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CAGCGGAGACCTGTCTGGTCA	0.602000													42	40					0	0	0.111260	0	0
WASH3P	374666	broad.mit.edu	37	15	102515299	102515299	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr15:102515299G>A	uc002cdi.2	+	9	1943	c.523G>A	c.(523-525)GGC>AGC	p.G175S	WASH3P_uc002cdl.2_Missense_Mutation_p.G175S|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.G175S|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						TGGGGGCATCGGCAAGGCCAA	0.652000													3	15					0	0	0.115264	0	0
MMP15	4324	broad.mit.edu	37	16	58079224	58079224	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr16:58079224G>A	uc002ena.2	+	10	2857	c.1884G>A	c.(1882-1884)ATG>ATA	p.M628I		NM_002428	NP_002419	P51511	MMP15_HUMAN	matrix metalloproteinase 15 preproprotein	628	Helical; (Potential).				protein modification process|proteolysis	extracellular matrix|integral to plasma membrane	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|protein binding|zinc ion binding			central_nervous_system(2)|breast(1)	3						ACGTGGTGATGGTGCTGGTGC	0.662000													13	21					0	0	0.105934	0	0
TAT	6898	broad.mit.edu	37	16	71606176	71606176	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr16:71606176C>T	uc002fap.2	-	6	718	c.619G>A	c.(619-621)GAA>AAA	p.E207K		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	207					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	GCTGTCTTTTCATCAATTAGA	0.418000													24	42					0	0	0.083992	0	0
HNF1B	6928	broad.mit.edu	37	17	36093584	36093584	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr17:36093584C>T	uc002hok.3	-	3	996	c.775G>A	c.(775-777)GAA>AAA	p.E259K	HNF1B_uc010wdi.1_Missense_Mutation_p.E233K|HNF1B_uc010cve.1_Missense_Mutation_p.E67K	NM_000458	NP_000449	P35680	HNF1B_HUMAN	hepatocyte nuclear factor 1-beta isoform 1	259	Homeobox; HNF1-type.				endocrine pancreas development|genitalia development|kidney development|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric nephron tubule development|regulation of pronephros size	nucleus	DNA binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(25;0.00765)|Ovarian(249;0.15)	STAD - Stomach adenocarcinoma(1;0.0142)			TCTCTCTCTTCCTTGCTGGGG	0.587000									Hereditary_Prostate_Cancer				201	241					0	0	0.139131	0	0
Unknown	0	broad.mit.edu	37	17	37263782	37263783	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr17:37263782_37263783GG>AA	uc002hrf.1	+	3	337_338	c.306_307GG>AA	c.(304-309)TGGGGA>TGAAGA	p.102_103WG>*R	PLXDC1_uc002hrg.2_Intron|PLXDC1_uc002hrh.2_Intron|PLXDC1_uc002hri.2_Intron|PLXDC1_uc002hrj.1_Intron|PLXDC1_uc002hrk.1_Intron					SubName: Full=cDNA FLJ42226 fis, clone THYMU2040824;																		ACTGTCCCTGGGGAGAAGAACA	0.604000													14	23					0	0	0.115264	0	0
KRTAP9-4	85280	broad.mit.edu	37	17	39406130	39406130	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr17:39406130G>A	uc002hwi.2	+	1	192	c.158G>A	c.(157-159)CGC>CAC	p.R53H	KRTAP9-9_uc010wfq.1_Intron	NM_033191	NP_149461	Q9BYQ2	KRA94_HUMAN	keratin associated protein 9-4	53	6.|15 X 5 AA repeats of C-C-[RQVGE]-[SPTN]- [TASPF].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000397)			CCTTGCTGCCGCCCAACTTGC	0.642000													4	66					0	0	0.029380	0	0
KRT13	3860	broad.mit.edu	37	17	39659243	39659243	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr17:39659243G>A	uc002hwu.1	-	4	906	c.843C>T	c.(841-843)TAC>TAT	p.Y281Y	KRT13_uc002hwv.1_Silent_p.Y281Y|KRT13_uc002hww.2_Silent_p.Y174Y|KRT13_uc010wfr.1_Silent_p.Y174Y|KRT13_uc010cxo.2_Silent_p.Y281Y|KRT13_uc002hwx.1_Silent_p.Y269Y	NM_153490	NP_705694	P13646	K1C13_HUMAN	keratin 13 isoform a	281	Rod.|Coil 2.				epidermis development	intermediate filament	structural molecule activity			ovary(2)|skin(2)|pancreas(1)	5		Breast(137;0.000286)				CCATGGCCTCGTACTGCTCCC	0.612000													101	110					0	0	0.139131	0	0
CACNA1G	8913	broad.mit.edu	37	17	48695411	48695411	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr17:48695411G>A	uc002irk.1	+	31	5601	c.5229G>A	c.(5227-5229)GTG>GTA	p.V1743V	CACNA1G_uc002irj.1_Silent_p.V1709V|CACNA1G_uc002irl.1_Silent_p.V1720V|CACNA1G_uc002irm.1_Silent_p.V1709V|CACNA1G_uc002irn.1_Silent_p.V1702V|CACNA1G_uc002iro.1_Silent_p.V1709V|CACNA1G_uc002irp.1_Silent_p.V1743V|CACNA1G_uc002irq.1_Silent_p.V1720V|CACNA1G_uc002irr.1_Silent_p.V1743V|CACNA1G_uc002irs.1_Silent_p.V1732V|CACNA1G_uc002irt.1_Silent_p.V1725V|CACNA1G_uc002irv.1_Silent_p.V1732V|CACNA1G_uc002irw.1_Silent_p.V1720V|CACNA1G_uc002iru.1_Silent_p.V1709V|CACNA1G_uc002irx.1_Silent_p.V1656V|CACNA1G_uc002iry.1_Silent_p.V1645V|CACNA1G_uc002irz.1_Silent_p.V1649V|CACNA1G_uc002isa.1_Silent_p.V1622V|CACNA1G_uc002isb.1_Silent_p.V1663V|CACNA1G_uc002isc.1_Silent_p.V1645V|CACNA1G_uc002isd.1_Silent_p.V1631V|CACNA1G_uc002ise.1_Silent_p.V1611V|CACNA1G_uc002isf.1_Silent_p.V1638V|CACNA1G_uc002isg.1_Silent_p.V1604V|CACNA1G_uc002ish.1_Silent_p.V1611V|CACNA1G_uc002isi.1_Silent_p.V1599V	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1743	IV.|Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	TTTTCCAGGTGGGGAACCTGG	0.557000													19	23					0	0	0.055883	0	0
UNK	85451	broad.mit.edu	37	17	73780856	73780856	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr17:73780856G>A	uc002jpm.2	+	2	123	c.123G>A	c.(121-123)GGG>GGA	p.G41G	UNK_uc002jpn.2_RNA|UNK_uc002jpo.2_RNA	NM_001080419	NP_001073888	Q9C0B0	UNK_HUMAN	zinc finger CCCH-type domain containing 5	Error:Variant_position_missing_in_Q9C0B0_after_alignment							nucleic acid binding|zinc ion binding				0			all cancers(21;2.61e-06)|Epithelial(20;7.39e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCGTGTGGGGGGTCTTCACGT	0.612000													7	13					0	0	0.047766	0	0
TCEB3C	162699	broad.mit.edu	37	18	44549197	44549197	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr18:44549197C>T	uc010dnr.2	-	1	1102	c.1102G>A	c.(1102-1104)GAA>AAA	p.E368K	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_001100817	NP_001094287	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	368	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						GTCCACCCTTCCAGAACGGGT	0.607000													16	628					0	0	0.069288	0	0
ST8SIA3	51046	broad.mit.edu	37	18	55020187	55020187	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr18:55020187A>G	uc002lgn.2	+	1	467	c.110A>G	c.(109-111)AAC>AGC	p.N37S		NM_015879	NP_056963	O43173	SIA8C_HUMAN	ST8 alpha-N-acetyl-neuraminide	37	Lumenal (Potential).				glycosphingolipid biosynthetic process|N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			breast(1)|skin(1)	2				READ - Rectum adenocarcinoma(59;0.19)|Colorectal(16;0.205)		AAAAAGGAGAACATCTTCACC	0.602000													27	37					0	0	0.116897	0	0
TJP3	27134	broad.mit.edu	37	19	3736281	3736281	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr19:3736281G>A	uc010xhv.1	+	10	1345	c.1345G>A	c.(1345-1347)GAC>AAC	p.D449N	TJP3_uc010xhs.1_Missense_Mutation_p.D416N|TJP3_uc010xht.1_Missense_Mutation_p.D380N|TJP3_uc010xhu.1_Missense_Mutation_p.D425N|TJP3_uc010xhw.1_Missense_Mutation_p.D435N	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	430	PDZ 3.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGCCCGGCCGACGGGCAGGG	0.687000													13	12					0	0	0.105934	0	0
OR7G1	125962	broad.mit.edu	37	19	9225585	9225585	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr19:9225585C>T	uc002mks.1	-	1	855	c.855G>A	c.(853-855)ATG>ATA	p.M285I		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						TGAAGGGGTTCATCATTTGAG	0.443000													47	42					0	0	0.139131	0	0
TECR	9524	broad.mit.edu	37	19	14674675	14674675	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr19:14674675T>A	uc002mza.2	+	5	354	c.227T>A	c.(226-228)CTG>CAG	p.L76Q	TECR_uc002mzb.2_Missense_Mutation_p.L91Q|TECR_uc010xns.1_5'UTR|TECR_uc002mzc.2_5'UTR|TECR_uc002mzd.2_Missense_Mutation_p.L76Q|TECR_uc002mze.2_5'Flank|TECR_uc002mzf.1_5'Flank	NM_138501	NP_612510	Q9NZ01	TECR_HUMAN	glycoprotein, synaptic 2	76					fatty acid elongation|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	trans-2-enoyl-CoA reductase (NADPH) activity|very long-chain-acyl-CoA dehydrogenase activity				0						ACGGCCACACTGTACTTCCGG	0.642000													35	29					0	0	0.059317	0	0
CYP4F8	11283	broad.mit.edu	37	19	15739173	15739173	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr19:15739173C>T	uc002nbi.2	+	12	1241	c.1177C>T	c.(1177-1179)CCC>TCC	p.P393S	CYP4F8_uc010xoj.1_Missense_Mutation_p.P205S	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	393					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						GCGGTTGCATCCCCCAATCCC	0.612000													53	62					0	0	0.139131	0	0
NWD1	284434	broad.mit.edu	37	19	16861034	16861034	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr19:16861034C>T	uc002neu.3	+	6	2003	c.1581C>T	c.(1579-1581)CTC>CTT	p.L527L	NWD1_uc002net.3_Silent_p.L392L|NWD1_uc002nev.3_Silent_p.L321L			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	527	NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GGGCCAGCCTCCCAGAGTGTG	0.642000													33	36					0	0	0.069456	0	0
FAM129C	199786	broad.mit.edu	37	19	17648329	17648329	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr19:17648329G>A	uc010xpr.1	+	6	803	c.665G>A	c.(664-666)GGT>GAT	p.G222D	FAM129C_uc010xpq.1_Missense_Mutation_p.G222D|FAM129C_uc010xps.1_Missense_Mutation_p.G191D|FAM129C_uc010xpt.1_RNA|FAM129C_uc002ngy.3_5'Flank|FAM129C_uc010xpu.1_5'Flank|FAM129C_uc002ngz.3_5'Flank|FAM129C_uc010eaw.2_5'Flank|FAM129C_uc002nhb.2_5'Flank	NM_173544	NP_775815	Q86XR2	NIBL2_HUMAN	B-cell novel protein 1 isoform a	222											0						GCCCTGCAGGGTGGCATCCGG	0.642000													39	40					0	0	0.098360	0	0
ZNF714	148206	broad.mit.edu	37	19	21299966	21299966	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr19:21299966C>T	uc002npo.3	+	6	859	c.499C>T	c.(499-501)CAT>TAT	p.H167Y	ZNF714_uc002npl.2_Missense_Mutation_p.H12Y|ZNF714_uc010ecp.1_Missense_Mutation_p.H118Y|ZNF714_uc002npn.2_RNA	NM_182515	NP_872321	Q96N38	ZN714_HUMAN	zinc finger protein 714	167	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TAAAAGAATTCATATTAGAGA	0.348000													18	34					0	0	0.043863	0	0
ZNF43	7594	broad.mit.edu	37	19	21991634	21991634	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr19:21991634T>C	uc002nqj.2	-	4	1335	c.1205A>G	c.(1204-1206)GAA>GGA	p.E402G	ZNF43_uc010ecv.2_Missense_Mutation_p.E396G|ZNF43_uc002nql.2_Missense_Mutation_p.E396G|ZNF43_uc002nqm.2_Missense_Mutation_p.E396G|ZNF43_uc002nqk.2_Missense_Mutation_p.E332G	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	402	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		TTTGCCACATTCTTCACATTT	0.363000													30	25					0	0	0.134883	0	0
ZNF43	7594	broad.mit.edu	37	19	21991924	21991924	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr19:21991924C>A	uc002nqj.2	-	4	1045	c.915G>T	c.(913-915)AAG>AAT	p.K305N	ZNF43_uc010ecv.2_Missense_Mutation_p.K299N|ZNF43_uc002nql.2_Missense_Mutation_p.K299N|ZNF43_uc002nqm.2_Missense_Mutation_p.K299N|ZNF43_uc002nqk.2_Missense_Mutation_p.K235N	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	305	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		GATGAATTTTCTTATGTTCAG	0.368000													31	23					4.74835e-14	5.68433e-14	0.045705	1	0
SUPT5H	6829	broad.mit.edu	37	19	39960881	39960881	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr19:39960881C>T	uc002olo.3	+	17	1676	c.1497C>T	c.(1495-1497)TTC>TTT	p.F499F	SUPT5H_uc002olp.3_Silent_p.F499F|SUPT5H_uc002olq.3_Silent_p.F495F|SUPT5H_uc002oln.3_Silent_p.F499F|SUPT5H_uc002olr.3_Silent_p.F499F|SUPT5H_uc002ols.1_Silent_p.F122F|SUPT5H_uc010egp.1_5'Flank	NM_001111020	NP_001104490	O00267	SPT5H_HUMAN	suppressor of Ty 5 homolog isoform a	499	KOW 3.				cell cycle|chromatin remodeling|mRNA capping|negative regulation of transcription elongation, DNA-dependent|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription elongation from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|response to organic substance|retroviral genome replication|transcription elongation from RNA polymerase II promoter	nucleoplasm	enzyme binding|protein heterodimerization activity			ovary(3)|pancreas(1)	4	all_cancers(60;6.69e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;1.57e-06)|Ovarian(47;0.159)		Epithelial(26;3.9e-26)|all cancers(26;1.35e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			AGGAGAATTTCGTTATCCTGT	0.552000													76	87					0	0	0.139131	0	0
C5AR1	728	broad.mit.edu	37	19	47823556	47823557	+	Missense_Mutation	DNP	CC	TT	TT	rs141160351		TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr19:47823556_47823557CC>TT	uc002pgj.1	+	2	571_572	c.522_523CC>TT	c.(520-525)TACCGG>TATTGG	p.R175W		NM_001736	NP_001727	P21730	C5AR_HUMAN	complement component 5 receptor 1	175	Extracellular (Potential).				activation of MAPK activity|activation of phospholipase C activity|cellular defense response|elevation of cytosolic calcium ion concentration|immune response|sensory perception of chemical stimulus	integral to plasma membrane	C5a anaphylatoxin receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_cancers(25;2e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000267)|OV - Ovarian serous cystadenocarcinoma(262;0.000618)|Epithelial(262;0.0142)|GBM - Glioblastoma multiforme(486;0.0242)		CCTTCCTGTACCGGGTGGTCCG	0.634000													66	86					0	0	0.115264	0	0
FPR2	2358	broad.mit.edu	37	19	52272840	52272840	+	Missense_Mutation	SNP	G	C	C	rs148745659	byFrequency	TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr19:52272840G>C	uc002pxr.2	+	2	974	c.929G>C	c.(928-930)CGA>CCA	p.R310P	FPR2_uc002pxs.3_Missense_Mutation_p.R310P|FPR2_uc010epf.2_Missense_Mutation_p.R310P	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	310	Cytoplasmic (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						CAAGACTTCCGAGAGAGACTG	0.542000													37	43					0	0	0.080422	0	0
ZNF701	55762	broad.mit.edu	37	19	53085502	53085502	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr19:53085502G>A	uc002pzs.1	+	4	317	c.190G>A	c.(190-192)GGC>AGC	p.G64S	ZNF701_uc010ydn.1_Missense_Mutation_p.G130S	NM_018260	NP_060730	Q9NV72	ZN701_HUMAN	zinc finger protein 701	64	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0105)|GBM - Glioblastoma multiforme(134;0.0402)		AACAGGACAAGGCAATACAGA	0.358000													26	33					0	0	0.134883	0	0
FCAR	2204	broad.mit.edu	37	19	55401098	55401098	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr19:55401098C>T	uc002qhr.1	+	5	930	c.733C>T	c.(733-735)CTG>TTG	p.L245L	FCAR_uc002qhs.1_RNA|FCAR_uc002qht.1_Silent_p.L196L|FCAR_uc010esi.1_Silent_p.L122L|FCAR_uc002qhu.1_Silent_p.L149L|FCAR_uc002qhv.1_Silent_p.L223L|FCAR_uc002qhw.1_Silent_p.L233L|FCAR_uc002qhx.1_Silent_p.L137L|FCAR_uc002qhy.1_Silent_p.L211L|FCAR_uc002qhz.1_Missense_Mutation_p.T208I|FCAR_uc002qia.1_Silent_p.L136L	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	245	Helical; (Potential).				immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		CTTGGCCATACTGGTTGAAAA	0.542000													153	166					0	0	0.139131	0	0
ZNF581	51545	broad.mit.edu	37	19	56156050	56156051	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr19:56156050_56156051CC>TT	uc002qln.2	+	2	829_830	c.113_114CC>TT	c.(112-114)TCC>TTT	p.S38F	ZNF581_uc002qlq.2_Missense_Mutation_p.S38F|CCDC106_uc002qlr.2_5'Flank	NM_016535	NP_057619	Q9P0T4	ZN581_HUMAN	zinc finger protein 581	38					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(87;0.133)	BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.105)		CCTTCCTCCTCCATCGGATCTC	0.614000													4	7					0	0	0.115264	0	0
FAM179A	165186	broad.mit.edu	37	2	29240119	29240119	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:29240119C>A	uc010ezl.2	+	9	1495	c.1144C>A	c.(1144-1146)CAG>AAG	p.Q382K	FAM179A_uc010ymm.1_Missense_Mutation_p.Q382K|FAM179A_uc002rmr.3_Intron	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	382							binding			ovary(3)|skin(1)	4						CAGGACAGGGCAGGAGCTCAC	0.602000													17	35					0.000566183	0.000646695	0.033300	1	0
MEMO1	51072	broad.mit.edu	37	2	32093518	32093518	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:32093518G>A	uc002rnx.2	-	9	1188	c.806C>T	c.(805-807)TCG>TTG	p.S269L	MEMO1_uc010ymu.1_Missense_Mutation_p.S246L|MEMO1_uc010ezq.2_Missense_Mutation_p.S269L|MEMO1_uc002rny.2_RNA|MEMO1_uc002rnz.2_RNA	NM_015955	NP_057039	Q9Y316	MEMO1_HUMAN	mediator of cell motility 1 isoform 1	269					regulation of microtubule-based process	cytosol|nucleus				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)					ATTCAAAAACGAAAAACTCAT	0.423000													4	8					0	0	0.014758	0	0
BIRC6	57448	broad.mit.edu	37	2	32724814	32724814	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:32724814G>A	uc010ezu.2	+	46	8803	c.8669G>A	c.(8668-8670)CGA>CAA	p.R2890Q		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	2890					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					GTGGGTGCTCGAGCATGCTTT	0.438000													87	128					0	0	0.139131	0	0
Unknown	0	broad.mit.edu	37	2	38709407	38709407	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:38709407C>T	uc002rqu.1	+	1	482	c.415C>T	c.(415-417)CAG>TAG	p.Q139*						SubName: Full=RPLP0 protein;																		CTCCTTTTTCCAGGCTTTAGG	0.552000													18	26					0	0	0.049695	0	0
VRK2	7444	broad.mit.edu	37	2	58373490	58373490	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:58373490G>A	uc002rzo.2	+	15	1808	c.1063G>A	c.(1063-1065)GCA>ACA	p.A355T	VRK2_uc010fcb.2_Missense_Mutation_p.A355T|VRK2_uc002rzs.2_Missense_Mutation_p.A355T|VRK2_uc002rzr.2_Missense_Mutation_p.A355T|VRK2_uc010fcc.2_Missense_Mutation_p.A237T|VRK2_uc002rzv.2_Missense_Mutation_p.A355T|VRK2_uc010fcd.2_Missense_Mutation_p.A332T|VRK2_uc002rzp.2_Missense_Mutation_p.A355T|VRK2_uc010ypg.1_Missense_Mutation_p.A355T|VRK2_uc002rzq.2_Missense_Mutation_p.A355T|VRK2_uc002rzu.2_Missense_Mutation_p.A355T|VRK2_uc002rzt.2_Missense_Mutation_p.A237T	NM_001130482	NP_001123954	Q86Y07	VRK2_HUMAN	vaccinia related kinase 2 isoform 2	355						integral to membrane	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						AGTCAACAAGGCACACAATAG	0.363000													16	23					0	0	0.146539	0	0
MAT2A	4144	broad.mit.edu	37	2	85770052	85770052	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:85770052C>T	uc002spr.2	+	8	1103	c.980C>T	c.(979-981)CCA>CTA	p.P327L	MAT2A_uc010ysr.1_Missense_Mutation_p.P327L|MAT2A_uc010fgk.2_Missense_Mutation_p.P301L|MAT2A_uc010fgl.2_Missense_Mutation_p.P264L	NM_005911	NP_005902	P31153	METK2_HUMAN	methionine adenosyltransferase II, alpha	327					methylation|xenobiotic metabolic process	cytosol	ATP binding|metal ion binding|methionine adenosyltransferase activity				0					L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	GTTTCTCATCCATTATCTATC	0.378000													39	74					0	0	0.098360	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95522727	95522727	+	RNA	SNP	C	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:95522727C>A	uc010fhp.2	-	1		c.94G>T				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						CTGCTTGTCCCGGGCGTCCAG	0.731000													5	56					0.000274275	0.000314721	0.047766	1	0
ANKRD20B	729171	broad.mit.edu	37	2	95522772	95522772	+	RNA	SNP	T	C	C			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:95522772T>C	uc010fhp.2	-	1		c.49A>G				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						GCGCTCCACCTCCGCGGCGTC	0.682000													3	73					0	0	0.047766	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95522786	95522786	+	RNA	SNP	T	C	C			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:95522786T>C	uc010fhp.2	-	1		c.35A>G				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						CGGCGTCGCCTTTGACAGCTG	0.687000													5	84					0	0	0.069234	0	0
PROM2	150696	broad.mit.edu	37	2	95944471	95944471	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:95944471G>A	uc002suh.1	+	9	1186	c.1053G>A	c.(1051-1053)GAG>GAA	p.E351E	PROM2_uc002sui.2_Silent_p.E351E|PROM2_uc002suj.2_Silent_p.E5E|PROM2_uc002suk.2_Silent_p.E351E|PROM2_uc002sul.2_5'UTR	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	351	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						TCCTGCAGGAGAACAGCACCT	0.637000													33	34					0	0	0.059317	0	0
TSN	7247	broad.mit.edu	37	2	122522899	122522899	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:122522899C>T	uc002tnl.2	+	6	878	c.643C>T	c.(643-645)CGG>TGG	p.R215W	TSN_uc002tnm.2_Missense_Mutation_p.R168W|TSN_uc010yze.1_3'UTR|TSN_uc010flt.2_RNA	NM_004622	NP_004613	Q15631	TSN_HUMAN	translin	215					DNA recombination	cytoplasm|nucleus	sequence-specific DNA binding			breast(2)|large_intestine(1)	3		Ovarian(717;0.0563)|Prostate(154;0.116)				TCTCTCCATCCGGGGCTTTAA	0.512000													49	68					0	0	0.139131	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125282027	125282027	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:125282027G>T	uc002tno.2	+	9	1836	c.1472G>T	c.(1471-1473)GGA>GTA	p.G491V	CNTNAP5_uc010flu.2_Missense_Mutation_p.G492V	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	491	Laminin G-like 2.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TACTATTTTGGAGGTAAATTC	0.438000													4	10					2.56e-06	2.99268e-06	0.009096	1	0
KLHL23	151230	broad.mit.edu	37	2	170592455	170592455	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:170592455G>A	uc002ufh.1	+	4	1269	c.931G>A	c.(931-933)GAG>AAG	p.E311K	KLHL23_uc002ufi.1_Missense_Mutation_p.E311K	NM_144711	NP_653312	Q8NBE8	KLH23_HUMAN	kelch-like 23	311	Kelch 1.										0						TTATACCAGGGAGAGCTATGG	0.423000													60	69					0	0	0.139131	0	0
UBR3	130507	broad.mit.edu	37	2	170930037	170930037	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:170930037C>T	uc010zdi.1	+	36	5119	c.5119C>T	c.(5119-5121)CCA>TCA	p.P1707S	UBR3_uc002ufr.3_RNA|UBR3_uc010fqa.2_Missense_Mutation_p.P528S|UBR3_uc002uft.3_Missense_Mutation_p.P564S|UBR3_uc010zdj.1_Missense_Mutation_p.P398S|UBR3_uc002ufu.3_Missense_Mutation_p.P213S	NM_172070	NP_742067	Q6ZT12	UBR3_HUMAN	E3 ubiquitin-protein ligase UBR3	1707					sensory perception of smell|suckling behavior|ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0						TCTGGATTGGCCAGTTCCAGC	0.403000													5	109					0	0	0.021553	0	0
TTN	7273	broad.mit.edu	37	2	179505295	179505295	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:179505295C>T	uc010zfg.1	-	170	33216	c.32992G>A	c.(32992-32994)GAA>AAA	p.E10998K	TTN_uc010zfh.1_Missense_Mutation_p.E4693K|TTN_uc010zfi.1_Missense_Mutation_p.E4626K|TTN_uc010zfj.1_Missense_Mutation_p.E4501K|TTN_uc010fre.1_Missense_Mutation_p.E876K|TTN_uc002umw.1_RNA|TTN_uc002umx.1_Missense_Mutation_p.E213K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11925							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCTTCCTTTCCCTTTTTGTA	0.318000													49	78					0	0	0.139131	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187712480	187712480	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:187712480G>A	uc002upu.1	-	2	248	c.208C>T	c.(208-210)CCG>TCG	p.P70S		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	70	SWIM-type.				apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			CCTCCTTTCGGAAATGTGGAA	0.348000													37	31					0	0	0.111260	0	0
WDR69	164781	broad.mit.edu	37	2	228754594	228754594	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:228754594G>A	uc002vpn.1	+	3	215	c.136G>A	c.(136-138)GAA>AAA	p.E46K	WDR69_uc010zlw.1_Missense_Mutation_p.E31K|WDR69_uc002vpo.1_RNA	NM_178821	NP_849143	Q8N136	WDR69_HUMAN	WD repeat domain 69	46										breast(1)	1		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;1.22e-10)|all cancers(144;8.11e-08)|Lung(261;0.011)|LUSC - Lung squamous cell carcinoma(224;0.0148)		TGCGTTAGTAGAAGAAATCCA	0.373000													19	23					0	0	0.055883	0	0
SP140	11262	broad.mit.edu	37	2	231177389	231177389	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:231177389G>A	uc002vql.2	+	27	2709	c.2594G>A	c.(2593-2595)GGG>GAG	p.G865E	SP140_uc010zma.1_Intron|SP140_uc002vqn.2_Missense_Mutation_p.G751E|SP140_uc002vqm.2_Missense_Mutation_p.G805E|SP140_uc010fxl.2_Missense_Mutation_p.G838E	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	865					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		GAAACAAATGGGAACAATTGA	0.239000													22	41					0	0	0.083992	0	0
SLC4A11	83959	broad.mit.edu	37	20	3215509	3215509	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr20:3215509G>A	uc002wig.2	-	2	216	c.168C>T	c.(166-168)TTC>TTT	p.F56F	SLC4A11_uc010zqe.1_Silent_p.F83F|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Silent_p.F40F	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	56	Cytoplasmic (Potential).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						CTCGGGCTTCGAAGGTGTCAT	0.547000													20	64					0	0	0.055883	0	0
PCNA	5111	broad.mit.edu	37	20	5100229	5100229	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr20:5100229G>A	uc002wlp.2	-	1	419	c.216C>T	c.(214-216)CTC>CTT	p.L72L	PCNA_uc002wlq.2_Silent_p.L72L|PCNA_uc010zqs.1_Silent_p.L72L	NM_182649	NP_872590	P12004	PCNA_HUMAN	proliferating cell nuclear antigen	72	Potential.|Interaction with NUDT15.				cell proliferation|DNA strand elongation involved in DNA replication|mismatch repair|nucleotide-excision repair, DNA gap filling|phosphatidylinositol-mediated signaling|positive regulation of deoxyribonuclease activity|regulation of DNA replication|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair|translesion synthesis	cytoplasm|DNA replication factor C complex|microtubule cytoskeleton|nuclear replication fork|nucleoplasm|PCNA complex|PCNA-p21 complex	dinucleotide insertion or deletion binding|DNA polymerase processivity factor activity|MutLalpha complex binding|purine-specific mismatch base pair DNA N-glycosylase activity			lung(1)	1						CTCACCTGGTGAGGTTCACGC	0.692000								DNA_polymerases_(catalytic_subunits)					6	27					0	0	0.038147	0	0
MCM8	84515	broad.mit.edu	37	20	5953775	5953775	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr20:5953775C>T	uc002wmi.2	+	12	1705	c.1328C>T	c.(1327-1329)CCA>CTA	p.P443L	MCM8_uc002wmj.2_Missense_Mutation_p.P427L|MCM8_uc002wmk.2_Missense_Mutation_p.P483L|MCM8_uc002wml.2_Missense_Mutation_p.P443L|MCM8_uc010gbp.2_Intron|MCM8_uc002wmm.2_5'UTR	NM_032485	NP_115874	Q9UJA3	MCM8_HUMAN	minichromosome maintenance complex component 8	443	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|nucleoside-triphosphatase activity			skin(1)	1						AACAGAATTCCAATTCGGGGA	0.413000													48	34					0	0	0.139131	0	0
TMEM90B	79953	broad.mit.edu	37	20	24523737	24523737	+	Missense_Mutation	SNP	G	A	A	rs140803711	by1000genomes	TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr20:24523737G>A	uc002wtw.1	+	2	637	c.4G>A	c.(4-6)GAT>AAT	p.D2N		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	2	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						GAGTACCATGGATGGCATCAT	0.507000													86	52					0	0	0.139131	0	0
CDK5RAP1	51654	broad.mit.edu	37	20	31973529	31973529	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr20:31973529G>A	uc010gek.2	-	7	927	c.803C>T	c.(802-804)CCT>CTT	p.P268L	CDK5RAP1_uc002wyy.2_Missense_Mutation_p.P178L|CDK5RAP1_uc002wyz.2_Missense_Mutation_p.P268L|CDK5RAP1_uc002wza.2_Missense_Mutation_p.P268L|CDK5RAP1_uc010gel.2_Missense_Mutation_p.P177L|CDK5RAP1_uc010gem.2_Missense_Mutation_p.P268L|CDK5RAP1_uc002wzc.1_Missense_Mutation_p.P268L|CDK5RAP1_uc010gen.2_Missense_Mutation_p.P268L	NM_016408	NP_057492	Q96SZ6	CK5P1_HUMAN	CDK5 regulatory subunit associated protein 1	268					brain development|negative regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation|tRNA modification	cytoplasm	4 iron, 4 sulfur cluster binding|metal ion binding|neuronal Cdc2-like kinase binding|transferase activity			ovary(2)|skin(2)|lung(1)	5						CCGGGTGAAAGGAACAATGCA	0.498000													41	181					0	0	0.092188	0	0
UQCC	55245	broad.mit.edu	37	20	33894523	33894523	+	Silent	SNP	C	G	G			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr20:33894523C>G	uc002xcd.2	-	9	778	c.711G>C	c.(709-711)CGG>CGC	p.R237R	UQCC_uc010zuy.1_Silent_p.R138R|UQCC_uc010zuz.1_Silent_p.R82R|UQCC_uc010zva.1_Silent_p.R100R|UQCC_uc002xce.2_Silent_p.R210R|UQCC_uc002xcg.2_Silent_p.R103R|UQCC_uc010gfb.2_Silent_p.R211R|UQCC_uc010zvb.1_Silent_p.R169R|UQCC_uc002xcf.2_Silent_p.R125R|UQCC_uc002xch.2_5'Flank|UQCC_uc002xcc.2_Silent_p.R50R	NM_018244	NP_060714	Q9NVA1	UQCC_HUMAN	basic FGF-repressed Zic binding protein isoform	237						cytoplasmic membrane-bounded vesicle				breast(1)	1			BRCA - Breast invasive adenocarcinoma(18;0.00252)			CTTCACATTTCCGGTTGAAGA	0.542000											OREG0025889	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	202	56					0	0	0.139131	0	0
CPNE1	8904	broad.mit.edu	37	20	34218407	34218407	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr20:34218407C>T	uc002xdf.2	-	15	1419	c.1056G>A	c.(1054-1056)TCG>TCA	p.S352S	CPNE1_uc002xdc.2_Silent_p.S14S|CPNE1_uc010zvj.1_Silent_p.S357S|CPNE1_uc002xde.2_Silent_p.S328S|CPNE1_uc002xdg.2_Silent_p.S352S|CPNE1_uc010gfi.2_RNA|CPNE1_uc010gfj.2_RNA|CPNE1_uc002xdh.2_Silent_p.S352S|CPNE1_uc002xdi.2_Silent_p.S352S|CPNE1_uc002xdj.2_Silent_p.S352S|CPNE1_uc002xdk.2_Silent_p.S352S|CPNE1_uc002xdl.2_Silent_p.S352S|CPNE1_uc002xdm.2_Silent_p.S352S	NM_152931	NP_690908	Q99829	CPNE1_HUMAN	copine I isoform a	352	VWFA.				lipid metabolic process|vesicle-mediated transport		calcium-dependent phospholipid binding|phosphatidylserine binding|transporter activity			upper_aerodigestive_tract(1)	1	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			CAAATTCATGCGAGACCTGGA	0.488000													7	587					0	0	0.038147	0	0
C20orf152	140894	broad.mit.edu	37	20	34571961	34571961	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr20:34571961C>T	uc002xes.1	+	5	621	c.465C>T	c.(463-465)TTC>TTT	p.F155F	C20orf152_uc002xer.1_Silent_p.F155F|C20orf152_uc010gfp.1_Intron			Q96M20	CT152_HUMAN	SubName: Full=C20orf152 protein;	155	cNMP.										0	Breast(12;0.00631)					GCTTTTATTTCATCTACCTGG	0.522000													158	41					0	0	0.139131	0	0
DSN1	79980	broad.mit.edu	37	20	35387003	35387003	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr20:35387003G>A	uc010gfr.2	-	7	981	c.608C>T	c.(607-609)TCT>TTT	p.S203F	DSN1_uc002xfz.2_Missense_Mutation_p.S203F|DSN1_uc002xfy.3_5'UTR|DSN1_uc002xga.2_Missense_Mutation_p.S203F|DSN1_uc010zvs.1_Missense_Mutation_p.S96F|DSN1_uc002xgc.2_Missense_Mutation_p.S187F|DSN1_uc002xgb.2_Missense_Mutation_p.S187F	NM_001145316	NP_001138788	Q9H410	DSN1_HUMAN	DSN1, MIND kinetochore complex component,	203					cell division|chromosome segregation|mitotic prometaphase	cytosol|MIS12/MIND type complex|nucleus	protein binding			ovary(2)	2		Myeloproliferative disorder(115;0.00874)				TGCTTCCAAAGAAAAATCTGA	0.289000													43	134					0	0	0.139131	0	0
RALGAPB	57148	broad.mit.edu	37	20	37146558	37146558	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr20:37146558G>A	uc002xiw.2	+	9	1589	c.1332G>A	c.(1330-1332)TTG>TTA	p.L444L	RALGAPB_uc010zvz.1_Silent_p.L444L|RALGAPB_uc002xix.2_Silent_p.L444L|RALGAPB_uc002xiy.1_Silent_p.L444L|RALGAPB_uc002xiz.2_Silent_p.L222L|RALGAPB_uc002xja.1_Silent_p.L171L	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	444					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						ACAGCATCTTGAATCTCTTTG	0.453000													103	55					0	0	0.139131	0	0
ZSWIM3	140831	broad.mit.edu	37	20	44505869	44505869	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr20:44505869C>T	uc002xqd.2	+	2	875	c.672C>T	c.(670-672)CAC>CAT	p.H224H	ZSWIM3_uc010zxg.1_Silent_p.H218H	NM_080752	NP_542790	Q96MP5	ZSWM3_HUMAN	zinc finger, SWIM domain containing 3	224							zinc ion binding			ovary(2)	2		Myeloproliferative disorder(115;0.0122)				TCTTGCTACACCGGGTGGAGA	0.557000													42	171					0	0	0.111260	0	0
SLC12A5	57468	broad.mit.edu	37	20	44685019	44685019	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr20:44685019G>A	uc010zxl.1	+	23	3071	c.2995G>A	c.(2995-2997)GAT>AAT	p.D999N	SLC12A5_uc002xrb.2_Missense_Mutation_p.D976N	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	999	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	GCTGATCCACGATCAGAGTGC	0.627000													8	41					0	0	0.038147	0	0
BAGE2	85319	broad.mit.edu	37	21	11058288	11058288	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr21:11058288G>A	uc002yit.1	-	3	360	c.152C>T	c.(151-153)TCA>TTA	p.S51L	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CACAGCATTTGATAGTGGCTC	0.403000													11	130					0	0	0.069234	0	0
DSCR10	259234	broad.mit.edu	37	21	39580587	39580587	+	RNA	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr21:39580587G>A	uc010gnt.1	+	3		c.709G>A				NR_027695				Homo sapiens DSCR10 mRNA, complete cds.												0						CTAACATTTGGAAACATTTAG	0.353000													84	14					0	0	0.139131	0	0
KRTAP12-3	386683	broad.mit.edu	37	21	46078116	46078116	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr21:46078116G>A	uc002zft.2	+	1	268	c.220G>A	c.(220-222)GGG>AGG	p.G74R	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198697	NP_941970	P60328	KR123_HUMAN	keratin associated protein 12-3	74	10.|14 X 5 AA approximate repeats.					intermediate filament				central_nervous_system(1)	1						CCAATCTTCGGGGTGCTGCCA	0.647000													40	6					0	0	0.098360	0	0
COL18A1	80781	broad.mit.edu	37	21	46895442	46895442	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr21:46895442A>G	uc011afs.1	+	4	2057	c.2036A>G	c.(2035-2037)GAG>GGG	p.E679G	COL18A1_uc002zhg.2_Missense_Mutation_p.E264G|COL18A1_uc002zhi.2_Missense_Mutation_p.E444G	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	679	Nonhelical region 1 (NC1).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CTTCTCAGGGAGGAGACGGTG	0.677000													5	2					0	0	0.014758	0	0
LOC96610	96610	broad.mit.edu	37	22	22758921	22758921	+	RNA	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr22:22758921G>A	uc011aim.1	+	53		c.5987G>A								Parts of antibodies, mostly variable regions.												0						AATAATAAGCGACCCTCAGGG	0.552000													164	4					0	0	0.139131	0	0
MYO18B	84700	broad.mit.edu	37	22	26194047	26194047	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr22:26194047C>T	uc003abz.1	+	12	2754	c.2504C>T	c.(2503-2505)GCG>GTG	p.A835V	MYO18B_uc003aca.1_Missense_Mutation_p.A716V|MYO18B_uc010guy.1_Missense_Mutation_p.A716V|MYO18B_uc010guz.1_Missense_Mutation_p.A716V|MYO18B_uc011aka.1_Intron|MYO18B_uc011akb.1_Missense_Mutation_p.A348V	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	835	Myosin head-like.		A -> G (in a lung squamous cell carcinoma sample; somatic mutation).			nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CACCTGGGTGCGGCGGGGGCC	0.662000													10	2					0	0	0.093190	0	0
MN1	4330	broad.mit.edu	37	22	28194068	28194068	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr22:28194068G>A	uc003adj.2	-	1	3419	c.2464C>T	c.(2464-2466)CAG>TAG	p.Q822*		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	822							binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						AGGCAGCTCTGGCCGAACAGG	0.627000			T	ETV6	AML|meningioma								44	10					0	0	0.117977	0	0
ST13	6767	broad.mit.edu	37	22	41223178	41223178	+	Silent	SNP	T	G	G			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr22:41223178T>G	uc003aze.2	-	11	1046	c.903A>C	c.(901-903)GGA>GGC	p.G301G	ST13_uc011aow.1_Silent_p.G291G	NM_003932	NP_003923	P50502	F10A1_HUMAN	heat shock 70kD protein binding protein	301	Gly/Met/Pro-rich.						protein binding, bridging				0						GCATGCCCCCTCCCATTCCAG	0.453000													200	8					0	0	0.139131	0	0
CPNE9	151835	broad.mit.edu	37	3	9754249	9754249	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr3:9754249G>A	uc003bsd.2	+	7	573	c.402G>A	c.(400-402)GGG>GGA	p.G134G		NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	134	C2 2.									ovary(2)	2	Medulloblastoma(99;0.227)					AGAAGTGTGGGACCATATTGC	0.532000													28	50					0	0	0.050027	0	0
OSBPL10	114884	broad.mit.edu	37	3	31743863	31743863	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr3:31743863C>T	uc003cev.2	-	8	1614	c.1233G>A	c.(1231-1233)ATG>ATA	p.M411I	OSBPL10_uc003ceu.1_Missense_Mutation_p.M168I|OSBPL10_uc011axf.1_Missense_Mutation_p.M347I	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	411					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		TGGTCAAATCCATTCCAAGTT	0.428000													11	27					0	0	0.080935	0	0
DLEC1	9940	broad.mit.edu	37	3	38151594	38151594	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr3:38151594G>A	uc003cho.1	+	23	3286	c.3265G>A	c.(3265-3267)GAG>AAG	p.E1089K	DLEC1_uc003chp.1_Missense_Mutation_p.E1089K|DLEC1_uc010hgv.1_Missense_Mutation_p.E1092K|DLEC1_uc003chr.1_Missense_Mutation_p.E195K|DLEC1_uc010hgx.1_RNA	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	1089					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		TTTCAGCACAGAGCAGTGGCC	0.602000													26	41					0	0	0.091800	0	0
SLC6A20	54716	broad.mit.edu	37	3	45801384	45801384	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr3:45801384C>T	uc011bai.1	-	10	1718	c.1594G>A	c.(1594-1596)GGG>AGG	p.G532R	SLC6A20_uc003cow.2_Missense_Mutation_p.G182R|SLC6A20_uc011baj.1_Missense_Mutation_p.G495R	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	532	Extracellular (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		TTCAGGGTCCCCGTGAGGATG	0.587000													69	73					0	0	0.139131	0	0
COL7A1	1294	broad.mit.edu	37	3	48609941	48609941	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr3:48609941C>T	uc003ctz.2	-	88	6932	c.6931G>A	c.(6931-6933)GAG>AAG	p.E2311K		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2311	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CTCACCTTCTCTCCCTTTGCT	0.647000													34	34					0	0	0.098360	0	0
MST1R	4486	broad.mit.edu	37	3	49933263	49933263	+	Silent	SNP	C	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr3:49933263C>A	uc003cxy.3	-	12	3111	c.2847G>T	c.(2845-2847)GGG>GGT	p.G949G	MST1R_uc011bdc.1_5'UTR	NM_002447	NP_002438	Q04912	RON_HUMAN	macrophage stimulating 1 receptor precursor	949	Extracellular (Potential).				cellular component movement|defense response|multicellular organismal development|positive regulation of cell proliferation|single fertilization|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|macrophage colony-stimulating factor receptor activity|protein binding			ovary(5)|lung(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.65e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00553)|Kidney(197;0.00625)		CCCCATCTGGCCCTGGCCGCA	0.622000													21	37					5.35356e-11	6.34779e-11	0.076483	1	0
RRP9	9136	broad.mit.edu	37	3	51971239	51971239	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr3:51971239G>A	uc003dbw.1	-	6	525	c.486C>T	c.(484-486)TTC>TTT	p.F162F		NM_004704	NP_004695	O43818	U3IP2_HUMAN	RNA, U3 small nucleolar interacting protein 2	162	WD 1.				rRNA processing	nucleolus|small nuclear ribonucleoprotein complex|small nucleolar ribonucleoprotein complex	RNA binding			breast(2)|ovary(1)	3				BRCA - Breast invasive adenocarcinoma(193;8.04e-05)|Kidney(197;0.000553)|KIRC - Kidney renal clear cell carcinoma(197;0.000724)		TGGCAGCAGAGAAGATGGCTG	0.607000													64	66					0	0	0.139131	0	0
ROBO2	6092	broad.mit.edu	37	3	77147226	77147226	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr3:77147226C>T	uc003dpy.3	+	2	766	c.123C>T	c.(121-123)ATC>ATT	p.I41I	ROBO2_uc003dpz.2_Silent_p.I41I|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Silent_p.I41I	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	41	Ig-like C2-type 1.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		CCGATGTCATCGTCTCTAAGG	0.547000													13	20					0	0	0.093190	0	0
CADM2	253559	broad.mit.edu	37	3	86010782	86010782	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr3:86010782G>A	uc003dqj.2	+	7	1554	c.928G>A	c.(928-930)GTT>ATT	p.V310I	CADM2_uc003dqk.2_Missense_Mutation_p.V319I|CADM2_uc003dql.2_Missense_Mutation_p.V312I	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	310	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		TGCGGAATATGTTCTCATTGT	0.358000													26	44					0	0	0.108266	0	0
OR5H6	79295	broad.mit.edu	37	3	97983771	97983771	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr3:97983771G>A	uc003dsi.1	+	1	643	c.643G>A	c.(643-645)GTT>ATT	p.V215I		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						CTTTCTAATGGTTTTTATTTT	0.289000													29	19					0	0	0.108266	0	0
HHLA2	11148	broad.mit.edu	37	3	108072555	108072555	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr3:108072555G>A	uc003dwy.3	+	4	513	c.346G>A	c.(346-348)GAA>AAA	p.E116K	HHLA2_uc011bhl.1_Missense_Mutation_p.E52K|HHLA2_uc010hpu.2_Missense_Mutation_p.E116K|HHLA2_uc003dwz.2_Missense_Mutation_p.E116K	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	116	Ig-like V-type 1.					integral to membrane				ovary(1)	1						CCTTCTGGACGAAGGAATTTA	0.398000													22	36					0	0	0.069288	0	0
UROC1	131669	broad.mit.edu	37	3	126219548	126219548	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr3:126219548C>T	uc003eiz.1	-	11	1167	c.1135G>A	c.(1135-1137)GTC>ATC	p.V379I	UROC1_uc010hsi.1_Missense_Mutation_p.V439I	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	379					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		CTTTCCTGGACCAGGTCCTTG	0.547000													39	53					0	0	0.124865	0	0
MECOM	2122	broad.mit.edu	37	3	168819935	168819935	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr3:168819935G>A	uc003ffi.3	-	10	2389	c.2120C>T	c.(2119-2121)TCA>TTA	p.S707L	MECOM_uc010hwk.1_Missense_Mutation_p.S721L|MECOM_uc003ffj.3_Missense_Mutation_p.S772L|MECOM_uc011bpi.1_Missense_Mutation_p.S699L|MECOM_uc003ffn.3_Missense_Mutation_p.S707L|MECOM_uc003ffk.2_Missense_Mutation_p.S698L|MECOM_uc003ffl.2_Missense_Mutation_p.S858L|MECOM_uc011bpj.1_Missense_Mutation_p.S895L|MECOM_uc011bpk.1_Missense_Mutation_p.S697L|MECOM_uc010hwn.2_Missense_Mutation_p.S886L	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	707					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						AGAGGGCACTGACTGTAAGAG	0.507000													28	23					0	0	0.099896	0	0
MCF2L2	23101	broad.mit.edu	37	3	182925450	182925450	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr3:182925450C>T	uc003fli.1	-	23	2748	c.2658G>A	c.(2656-2658)ATG>ATA	p.M886I		NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	886	PH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			CCCCAGGCTCCATTCGTATCT	0.428000													47	78					0	0	0.139131	0	0
ETV5	2119	broad.mit.edu	37	3	185783821	185783821	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr3:185783821G>A	uc003fpz.2	-	8	938	c.691C>T	c.(691-693)CCT>TCT	p.P231S	ETV5_uc003fpy.2_Missense_Mutation_p.P273S	NM_004454	NP_004445	P41161	ETV5_HUMAN	ets variant gene 5 (ets-related molecule)	231					cellular response to oxidative stress	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|skin(2)|breast(1)	5	all_cancers(143;4.06e-12)|Ovarian(172;0.0386)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.62e-24)			CCTGGCTGAGGAGGGAAGGGG	0.488000			T	TMPRSS2|SCL45A3	Prostate 								32	37					0	0	0.045705	0	0
TP63	8626	broad.mit.edu	37	3	189455576	189455576	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr3:189455576G>A	uc003fry.2	+	2	199	c.110G>A	c.(109-111)CGA>CAA	p.R37Q	TP63_uc003frx.2_Missense_Mutation_p.R37Q|TP63_uc003frz.2_Missense_Mutation_p.R37Q|TP63_uc010hzc.1_Missense_Mutation_p.R37Q	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	37	Transcription activation.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		AGTTATTACCGATCCACCATG	0.373000									Hay-Wells_syndrome	HNSCC(45;0.13)			23	29					0	0	0.091800	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6083437	6083437	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr4:6083437C>T	uc003giu.3	-	6	1276	c.1000G>A	c.(1000-1002)GAG>AAG	p.E334K	JAKMIP1_uc010idb.1_Missense_Mutation_p.E334K|JAKMIP1_uc010idc.1_Missense_Mutation_p.E169K|JAKMIP1_uc010idd.1_Missense_Mutation_p.E334K|JAKMIP1_uc011bwc.1_Missense_Mutation_p.E169K|JAKMIP1_uc003giv.3_Missense_Mutation_p.E334K|JAKMIP1_uc010ide.2_Missense_Mutation_p.E334K	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	334	Potential.|Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TTGTTCTTCTCCACCAGGGGC	0.522000													31	33					0	0	0.045705	0	0
TADA2B	93624	broad.mit.edu	37	4	7056555	7056555	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr4:7056555C>T	uc003gjw.3	+	2	1188	c.1037C>T	c.(1036-1038)CCA>CTA	p.P346L	TADA2B_uc010idi.2_Missense_Mutation_p.P271L	NM_152293	NP_689506	Q86TJ2	TAD2B_HUMAN	transcriptional adaptor 2 (ADA2 homolog,	346					regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|zinc ion binding				0						GAGAACCTTCCAGGCTTCGAG	0.512000													49	58					0	0	0.139131	0	0
WDR1	9948	broad.mit.edu	37	4	10100722	10100722	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr4:10100722C>T	uc003gmf.2	-	4	554	c.271G>A	c.(271-273)GAG>AAG	p.E91K	WDR1_uc003gmg.2_Intron	NM_017491	NP_059830	O75083	WDR1_HUMAN	WD repeat-containing protein 1 isoform 1	91	WD 1.				platelet activation|platelet degranulation|sensory perception of sound	cytoskeleton|cytosol|extracellular region	actin binding			ovary(2)|pancreas(1)	3				STAD - Stomach adenocarcinoma(129;0.000703)|Colorectal(103;0.0057)|LUSC - Lung squamous cell carcinoma(721;0.0232)		AACAGGTGCTCCTTCTGCGTG	0.597000													30	47					0	0	0.050027	0	0
PHOX2B	8929	broad.mit.edu	37	4	41747973	41747973	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr4:41747973C>A	uc003gwf.3	-	3	1156	c.796G>T	c.(796-798)GCT>TCT	p.A266S		NM_003924	NP_003915	Q99453	PHX2B_HUMAN	paired-like homeobox 2b	266					positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			autonomic_ganglia(7)|lung(2)|ovary(2)|central_nervous_system(1)	12						GGGCCCCCAGCCGCAGCCAGG	0.468000			Mis|F		neuroblastoma	neuroblastoma	congenital central hypoventilation syndrome		Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				6	9					2.0095e-06	2.36021e-06	0.029380	1	0
LPHN3	23284	broad.mit.edu	37	4	62761482	62761482	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr4:62761482G>A	uc010ihh.2	+	8	1786	c.1613G>A	c.(1612-1614)GGA>GAA	p.G538E	LPHN3_uc003hcq.3_Missense_Mutation_p.G538E|LPHN3_uc003hcs.1_Missense_Mutation_p.G367E	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	538	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						GCTCCTGATGGAATTTGGGAT	0.373000													9	14					0	0	0.058154	0	0
ADH1B	125	broad.mit.edu	37	4	100237120	100237120	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr4:100237120C>T	uc003hus.3	-	5	586	c.502G>A	c.(502-504)GAG>AAG	p.E168K	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.E128K|ADH1B_uc011ceh.1_Missense_Mutation_p.E13K|ADH1B_uc011cei.1_Missense_Mutation_p.E128K	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	168					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	CAGACTTTCTCCAGGGGCGAG	0.517000													39	72					0	0	0.098360	0	0
BBS7	55212	broad.mit.edu	37	4	122749834	122749834	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr4:122749834G>A	uc003ied.2	-	16	1900	c.1726C>T	c.(1726-1728)CTA>TTA	p.L576L	BBS7_uc003iee.1_Silent_p.L576L	NM_176824	NP_789794	Q8IWZ6	BBS7_HUMAN	Bardet-Biedl syndrome 7 protein isoform a	576					cilium morphogenesis|digestive tract morphogenesis|fat cell differentiation|heart looping|melanosome transport|pigment granule aggregation in cell center|response to stimulus|visual perception	BBSome|centrosome|cilium membrane	protein binding			ovary(1)	1						ACATCTTTTAGGATGGAGATA	0.269000									Bardet-Biedl_syndrome				14	22					0	0	0.033300	0	0
GLRB	2743	broad.mit.edu	37	4	158059978	158059978	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr4:158059978G>A	uc003ipj.2	+	7	830	c.628G>A	c.(628-630)GAT>AAT	p.D210N		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	210	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	CACAACTGATGATTTACGATT	0.249000													38	56					0	0	0.117977	0	0
MARCH1	55016	broad.mit.edu	37	4	164506934	164506934	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr4:164506934G>A	uc003iqs.1	-	6	1367	c.390C>T	c.(388-390)TTC>TTT	p.F130F	MARCH1_uc003iqr.1_Silent_p.F113F	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	130	RING-CH-type.				antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TCTCCATTATGAAGTCATACT	0.493000													44	86					0	0	0.139131	0	0
GLRA3	8001	broad.mit.edu	37	4	175709987	175709987	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr4:175709987C>T	uc003ity.1	-	2	682	c.179G>A	c.(178-180)AGA>AAA	p.R60K	GLRA3_uc003itz.1_Missense_Mutation_p.R60K	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	60	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	GGGTCTGATTCTTGCATCATA	0.358000													24	33					0	0	0.108266	0	0
CCDC110	256309	broad.mit.edu	37	4	186380896	186380896	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr4:186380896T>C	uc003ixu.3	-	6	921	c.845A>G	c.(844-846)GAC>GGC	p.D282G	CCDC110_uc003ixv.3_Missense_Mutation_p.D245G|CCDC110_uc011ckt.1_Missense_Mutation_p.D282G	NM_152775	NP_689988	Q8TBZ0	CC110_HUMAN	coiled-coil domain containing 110 isoform a	282						nucleus				central_nervous_system(1)	1		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;7.86e-05)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|Colorectal(36;0.0381)|all_hematologic(60;0.0749)		OV - Ovarian serous cystadenocarcinoma(60;1.13e-10)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.00014)|STAD - Stomach adenocarcinoma(60;0.000777)|LUSC - Lung squamous cell carcinoma(40;0.00921)|COAD - Colon adenocarcinoma(29;0.0105)|READ - Rectum adenocarcinoma(43;0.164)		AGGGGACATGTCATATTTACC	0.338000													3	72					0	0	0.014758	0	0
PDLIM3	27295	broad.mit.edu	37	4	186435436	186435436	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr4:186435436G>A	uc003ixw.3	-	4	510	c.386C>T	c.(385-387)CCG>CTG	p.P129L	PDLIM3_uc003ixx.3_Intron|PDLIM3_uc010isi.2_Intron|PDLIM3_uc003ixy.2_3'UTR|PDLIM3_uc003ixz.2_3'UTR	NM_014476	NP_055291	Q53GG5	PDLI3_HUMAN	PDZ and LIM domain protein 3 isoform a	129						sarcomere	zinc ion binding			ovary(2)	2		all_lung(41;1.03e-13)|Lung NSC(41;2.49e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.00996)|Colorectal(36;0.0161)|all_hematologic(60;0.0592)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.4e-10)|BRCA - Breast invasive adenocarcinoma(30;8.64e-05)|GBM - Glioblastoma multiforme(59;0.000167)|STAD - Stomach adenocarcinoma(60;0.000828)|LUSC - Lung squamous cell carcinoma(40;0.00984)|COAD - Colon adenocarcinoma(29;0.0115)|READ - Rectum adenocarcinoma(43;0.171)		GCTTCGGCCCGGGATCACGAA	0.453000													40	4					0	0	0.124865	0	0
FAM173B	134145	broad.mit.edu	37	5	10236718	10236718	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr5:10236718C>T	uc003jeo.2	-	3	345	c.316G>A	c.(316-318)GCT>ACT	p.A106T	FAM173B_uc003jep.2_RNA|FAM173B_uc010itr.2_Missense_Mutation_p.A106T	NM_199133	NP_954584	Q6P4H8	F173B_HUMAN	hypothetical protein LOC134145	106						integral to membrane				kidney(1)|central_nervous_system(1)	2						TTCTTCGCAGCCGCTATGACC	0.408000													33	23					0	0	0.059317	0	0
MARCH6	10299	broad.mit.edu	37	5	10430029	10430029	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr5:10430029T>A	uc003jet.1	+	25	2714	c.2531T>A	c.(2530-2532)TTA>TAA	p.L844*	MARCH6_uc011cmu.1_Nonsense_Mutation_p.L796*|MARCH6_uc003jeu.1_Nonsense_Mutation_p.L542*|MARCH6_uc011cmv.1_Nonsense_Mutation_p.L739*	NM_005885	NP_005876	O60337	MARH6_HUMAN	membrane-associated ring finger (C3HC4) 6	844	Extracellular (Potential).				protein K48-linked ubiquitination	integral to endoplasmic reticulum membrane	ubiquitin conjugating enzyme binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|breast(1)	2						ATGCAAAACTTAGTCCATCGG	0.388000													46	26					0	0	0.139131	0	0
DNAH5	1767	broad.mit.edu	37	5	13735336	13735336	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr5:13735336C>T	uc003jfd.2	-	68	11707	c.11665G>A	c.(11665-11667)GAG>AAG	p.E3889K	DNAH5_uc003jfc.2_Missense_Mutation_p.E57K	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3889					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTGTGCTCCTCGTACAGCCCT	0.458000									Kartagener_syndrome				23	72					0	0	0.076483	0	0
PIK3R1	5295	broad.mit.edu	37	5	67576528	67576528	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr5:67576528C>T	uc003jva.2	+	6	1367	c.807C>T	c.(805-807)AGC>AGT	p.S269S	PIK3R1_uc003jvb.2_Silent_p.S269S	NM_181523	NP_852664	P27986	P85A_HUMAN	phosphoinositide-3-kinase, regulatory subunit 1	269	Rho-GAP.				epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|growth hormone receptor signaling pathway|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|T cell costimulation|T cell receptor signaling pathway	1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex	1-phosphatidylinositol binding|ErbB-3 class receptor binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase regulator activity|protein phosphatase binding	p.?(1)		endometrium(34)|central_nervous_system(27)|large_intestine(20)|breast(7)|ovary(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|urinary_tract(1)|skin(1)|pancreas(1)	101		Lung NSC(167;1.99e-05)|Prostate(74;0.00308)|Ovarian(174;0.00473)|Colorectal(97;0.0176)		OV - Ovarian serous cystadenocarcinoma(47;3.76e-51)|Lung(70;0.0211)	Isoproterenol(DB01064)	AAATTTTCAGCCCTATGCTTT	0.393000			Mis|F|O		gliobastoma|ovarian|colorectal					TCGA GBM(4;<1E-08)			56	30					0	0	0.139131	0	0
DMGDH	29958	broad.mit.edu	37	5	78359493	78359493	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr5:78359493C>T	uc003kfs.2	-	2	225	c.219G>A	c.(217-219)ATG>ATA	p.M73I	DMGDH_uc011ctf.1_Missense_Mutation_p.E29K|DMGDH_uc011ctg.1_5'UTR	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	73					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		CCACATCTTTCATCCCTGCTT	0.488000													36	68					0	0	0.064281	0	0
CMYA5	202333	broad.mit.edu	37	5	79029992	79029992	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr5:79029992G>A	uc003kgc.2	+	2	5476	c.5404G>A	c.(5404-5406)GTA>ATA	p.V1802I		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1802						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TTCATCCCAGGTACTCCAGAG	0.393000													40	72					0	0	0.080422	0	0
CCDC99	54908	broad.mit.edu	37	5	169028327	169028327	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr5:169028327C>T	uc003mae.3	+	11	1647	c.1368C>T	c.(1366-1368)CTC>CTT	p.L456L	CCDC99_uc010jjj.2_Silent_p.L385L|CCDC99_uc011deq.1_Silent_p.L273L|CCDC99_uc010jjk.2_Silent_p.L182L	NM_017785	NP_060255	Q96EA4	SPDLY_HUMAN	coiled-coil domain containing 99	456					cell division|establishment of mitotic spindle orientation|mitotic metaphase plate congression|mitotic prometaphase|protein localization to kinetochore	condensed chromosome outer kinetochore|cytosol|microtubule organizing center|nucleus|spindle pole	kinetochore binding|protein binding			ovary(1)|liver(1)	2	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GTGAGGTGCTCCCTGTGGATA	0.443000													44	4					0	0	0.124865	0	0
HLA-DOA	3111	broad.mit.edu	37	6	32975833	32975833	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr6:32975833C>T	uc003ocr.2	-	2	364	c.288G>A	c.(286-288)CTG>CTA	p.L96L	HLA-DOA_uc010juj.2_Silent_p.L66L|HLA-DOA_uc010jui.2_Silent_p.L96L	NM_002119	NP_002110	P06340	DOA_HUMAN	major histocompatibility complex, class II, DO	96	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endosome membrane|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						CCAGGATGTCCAGATGGGCTT	0.637000													25	54					0	0	0.099896	0	0
CRISP2	7180	broad.mit.edu	37	6	49666200	49666200	+	Missense_Mutation	SNP	G	A	A	rs148414007	by1000genomes	TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr6:49666200G>A	uc003ozq.2	-	7	548	c.292C>T	c.(292-294)CTC>TTC	p.L98F	CRISP2_uc003ozl.2_Missense_Mutation_p.L98F|CRISP2_uc003ozn.2_Missense_Mutation_p.L98F|CRISP2_uc003ozr.2_Missense_Mutation_p.L98F|CRISP2_uc003ozo.2_Missense_Mutation_p.L98F|CRISP2_uc003ozm.2_Missense_Mutation_p.L98F|CRISP2_uc003ozp.2_Missense_Mutation_p.L98F	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	98						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			GACATATAGAGATTCTCACCA	0.408000													33	45					0	0	0.045705	0	0
GFRAL	389400	broad.mit.edu	37	6	55216059	55216059	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr6:55216059G>A	uc003pcm.1	+	5	465	c.379G>A	c.(379-381)GGG>AGG	p.G127R		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	127	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			AGGATTCAAAGGGATGTGGTC	0.433000													86	100					0	0	0.139131	0	0
BMP5	653	broad.mit.edu	37	6	55684502	55684502	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr6:55684502C>T	uc003pcq.2	-	2	1346	c.634G>A	c.(634-636)GAA>AAA	p.E212K	BMP5_uc011dxf.1_Missense_Mutation_p.E212K	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	212					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			TTAATTGTTTCATTTTCAAAT	0.323000													24	23					0	0	0.108266	0	0
C6orf221	154288	broad.mit.edu	37	6	74072991	74072991	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr6:74072991G>A	uc003pgt.3	+	2	396	c.343G>A	c.(343-345)GCG>ACG	p.A115T		NM_001017361	NP_001017361	Q587J8	ECAT1_HUMAN	hypothetical protein LOC154288	115										skin(2)	2						CCAGCTCCAGGCGAAAGGTAC	0.582000													37	46					0	0	0.074837	0	0
NMBR	4829	broad.mit.edu	37	6	142396988	142396988	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr6:142396988G>A	uc003qiu.2	-	3	1111	c.970C>T	c.(970-972)CTT>TTT	p.L324F		NM_002511	NP_002502	P28336	NMBR_HUMAN	neuromedin B receptor	324	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	cytoplasm|integral to plasma membrane	bombesin receptor activity			central_nervous_system(3)|breast(1)	4	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;9.93e-06)|GBM - Glioblastoma multiforme(68;0.0013)		AGTAGGTAAAGAGCAAATGGG	0.458000													51	39					0	0	0.139131	0	0
TIAM2	26230	broad.mit.edu	37	6	155458566	155458566	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr6:155458566G>A	uc003qqb.2	+	7	2723	c.1450G>A	c.(1450-1452)GAG>AAG	p.E484K	TIAM2_uc003qqe.2_Missense_Mutation_p.E484K|TIAM2_uc010kjj.2_Missense_Mutation_p.E17K	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	484					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		AGAAACCGCCGAGTCCAGCAG	0.532000													63	63					0	0	0.139131	0	0
UNC93A	54346	broad.mit.edu	37	6	167709750	167709750	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr6:167709750G>A	uc003qvq.2	+	3	674	c.499_splice	c.e3+1	p.E167_splice	UNC93A_uc003qvr.2_Splice_Site_p.G167_splice	NM_018974	NP_061847	Q86WB7	UN93A_HUMAN	unc-93 homolog A isoform 1							integral to membrane|plasma membrane					0		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		CCCAGCCAAGGTAAAAGGAAA	0.502000													31	52					0	0	0.050027	0	0
TTYH3	80727	broad.mit.edu	37	7	2686504	2686504	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr7:2686504G>A	uc003smp.2	+	2	328	c.141G>A	c.(139-141)GGG>GGA	p.G47G	TTYH3_uc010ksn.2_5'Flank|TTYH3_uc003smq.2_5'Flank	NM_025250	NP_079526	Q9C0H2	TTYH3_HUMAN	tweety 3	47	Helical; Name=1; (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;2.04e-14)		TGCTCCTGGGGGCCGCCGCCC	0.731000													42	4					0	0	0.139131	0	0
DNAH11	8701	broad.mit.edu	37	7	21658816	21658816	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr7:21658816G>A	uc003svc.2	+	24	4399	c.4368G>A	c.(4366-4368)GCG>GCA	p.A1456A		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1456	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity	p.A1456V(1)		ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TGGACAAGGCGGTGAAAGAGC	0.443000									Kartagener_syndrome				11	14					0	0	0.069234	0	0
NPVF	64111	broad.mit.edu	37	7	25266388	25266388	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr7:25266388C>T	uc003sxo.2	-	2	443	c.396G>A	c.(394-396)GGG>GGA	p.G132G		NM_022150	NP_071433	Q9HCQ7	RFRP_HUMAN	neuropeptide VF precursor	132					neuropeptide signaling pathway	extracellular region|membrane	G-protein coupled receptor activity			ovary(1)	1						TTGTTGTTCTCCCAAACCTTT	0.478000													188	83					0	0	0.139131	0	0
LANCL2	55915	broad.mit.edu	37	7	55466279	55466279	+	Silent	SNP	T	C	C			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr7:55466279T>C	uc003tqp.2	+	3	1064	c.486T>C	c.(484-486)TAT>TAC	p.Y162Y		NM_018697	NP_061167	Q9NS86	LANC2_HUMAN	LanC lantibiotic synthetase component C-like 2	162					negative regulation of transcription, DNA-dependent|positive regulation of abscisic acid mediated signaling pathway	cortical actin cytoskeleton|cytosol|nucleus|plasma membrane	ATP binding|catalytic activity|GTP binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4-phosphate binding|phosphatidylinositol-5-phosphate binding			ovary(1)|skin(1)	2	Breast(14;0.0379)		Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00128)|Epithelial(13;0.0706)			CTGTGATTTATCACAAACTCA	0.488000													13	40					0	0	0.119110	0	0
CCDC146	57639	broad.mit.edu	37	7	76903049	76903049	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr7:76903049G>A	uc003uga.2	+	10	1339	c.1212G>A	c.(1210-1212)GAG>GAA	p.E404E	CCDC146_uc010ldp.2_Intron	NM_020879	NP_065930	Q8IYE0	CC146_HUMAN	coiled-coil domain containing 146	404	Potential.									ovary(1)|central_nervous_system(1)	2		all_cancers(73;0.128)|all_lung(88;0.0986)|all_epithelial(88;0.163)|Myeloproliferative disorder(862;0.205)				CATTATCTGAGAGAAGGCGAG	0.328000													46	54					0	0	0.139131	0	0
PCLO	27445	broad.mit.edu	37	7	82582166	82582166	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr7:82582166C>T	uc003uhx.2	-	5	8392	c.8103G>A	c.(8101-8103)GAG>GAA	p.E2701E	PCLO_uc003uhv.2_Silent_p.E2701E|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2632					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GAGCAAGAGGCTCTGGAGGAA	0.403000													14	27					0	0	0.119110	0	0
ABCB1	5243	broad.mit.edu	37	7	87144571	87144571	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr7:87144571G>A	uc003uiz.1	-	26	3676	c.3258C>T	c.(3256-3258)TTC>TTT	p.F1086F	ABCB1_uc011khc.1_Silent_p.F1022F	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	1086	Cytoplasmic (Potential).|ABC transporter 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	AGGGGTCGTAGAACCGCTCCA	0.517000													24	33					0	0	0.116897	0	0
TSC22D4	81628	broad.mit.edu	37	7	100071977	100071977	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr7:100071977G>A	uc003uva.2	-	3	1604	c.849C>T	c.(847-849)TTC>TTT	p.F283F	TSC22D4_uc003uvb.2_Silent_p.F44F|TSC22D4_uc011kjv.1_Silent_p.F44F|TSC22D4_uc010lgx.2_Silent_p.F283F|TSC22D4_uc003uvc.3_Silent_p.F283F	NM_030935	NP_112197	Q9Y3Q8	T22D4_HUMAN	TSC22 domain family, member 4	283					negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			breast(2)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTACTGCTCCGAAGGGGTCTG	0.607000													27	29					0	0	0.099896	0	0
GIGYF1	64599	broad.mit.edu	37	7	100281709	100281709	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr7:100281709G>A	uc003uwg.1	-	15	2811	c.1802C>T	c.(1801-1803)CCG>CTG	p.P601L		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	601	Poly-Pro.|Gln-rich.									large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					CTGCTGTGGCGGCGGCGGTGG	0.677000													21	18					0	0	0.099896	0	0
PRKAR2B	5577	broad.mit.edu	37	7	106685403	106685403	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr7:106685403G>A	uc003vdx.2	+	1	226	c.51G>A	c.(49-51)ACG>ACA	p.T17T		NM_002736	NP_002727	P31323	KAP3_HUMAN	cAMP-dependent protein kinase, regulatory	17	Dimerization and phosphorylation.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G2/M transition of mitotic cell cycle|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|transmembrane transport|water transport	centrosome|cytosol|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity			ovary(1)	1						AGGGCTTCACGGTGGAGGTGC	0.726000													3	8					0	0	0.115264	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147926820	147926820	+	Silent	SNP	A	G	G			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr7:147926820A>G	uc003weu.1	+	20	3846	c.3330A>G	c.(3328-3330)GGA>GGG	p.G1110G		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1110	Laminin G-like 4.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TGGCCAATGGACAGCCCCACA	0.423000										HNSCC(39;0.1)			10	17					0	0	0.058154	0	0
MLL3	58508	broad.mit.edu	37	7	151849907	151849908	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr7:151849907_151849908CC>TT	uc003wla.2	-	49	12627_12628	c.12408_12409GG>AA	c.(12406-12411)TTGGAG>TTAAAG	p.E4137K	MLL3_uc003wkz.2_Missense_Mutation_p.E3255K|MLL3_uc003wkx.2_Missense_Mutation_p.E295K|MLL3_uc003wky.2_Missense_Mutation_p.E1701K	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	4137					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TGTCGATACTCCAAACCCGGGT	0.520000			N		medulloblastoma								47	56					0	0	0.115264	0	0
CSMD1	64478	broad.mit.edu	37	8	3008933	3008933	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr8:3008933A>G	uc011kwk.1	-	40	6410	c.6020T>C	c.(6019-6021)TTA>TCA	p.L2007S	CSMD1_uc011kwj.1_Missense_Mutation_p.L1399S|CSMD1_uc003wqe.2_Missense_Mutation_p.L1163S|CSMD1_uc010lrg.2_Missense_Mutation_p.L75S	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2007	Extracellular (Potential).|CUB 12.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GCCGATGGGTAATGAGATCCT	0.448000													5	6					0	0	0.021553	0	0
CLU	1191	broad.mit.edu	37	8	27462570	27462570	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr8:27462570G>A	uc003xfw.1	-	4	758	c.700C>T	c.(700-702)CCG>TCG	p.P234S	CLU_uc010lux.1_Missense_Mutation_p.P99S|CLU_uc003xfx.1_Missense_Mutation_p.P234S|CLU_uc003xfy.1_Missense_Mutation_p.P245S|CLU_uc003xfz.1_Missense_Mutation_p.P286S	NM_203339	NP_976084	P10909	CLUS_HUMAN	clusterin isoform 2	234					chaperone-mediated protein folding|complement activation, classical pathway|innate immune response|lipid metabolic process|negative regulation of apoptosis|negative regulation of protein homooligomerization|platelet activation|platelet degranulation|positive regulation of NF-kappaB transcription factor activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|response to misfolded protein|response to virus|reverse cholesterol transport	chromaffin granule|cytosol|endoplasmic reticulum|microsome|mitochondrial membrane|nucleus|perinuclear region of cytoplasm|platelet alpha granule lumen|spherical high-density lipoprotein particle	misfolded protein binding|ubiquitin protein ligase binding			ovary(2)	2		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|Colorectal(74;0.132)		GGCTCGTACGGAGAGAAGGGC	0.592000													32	47					0	0	0.064281	0	0
GPR124	25960	broad.mit.edu	37	8	37690619	37690619	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr8:37690619A>C	uc003xkj.2	+	9	1552	c.1189A>C	c.(1189-1191)ACC>CCC	p.T397P	GPR124_uc010lvy.2_Missense_Mutation_p.T397P	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	397	Extracellular (Potential).				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			TGCCCCGGGCACCCGAGCCTC	0.677000													14	38					0	0	0.134883	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110431459	110431459	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr8:110431459G>A	uc003yne.2	+	22	2598	c.2494G>A	c.(2494-2496)GGA>AGA	p.G832R		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	832	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AGTGTACATTGGACACACATC	0.328000										HNSCC(38;0.096)			5	11					0	0	0.014758	0	0
CSMD3	114788	broad.mit.edu	37	8	113275867	113275867	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr8:113275867C>T	uc003ynu.2	-	61	10021	c.9862_splice	c.e61+1	p.P3288_splice	CSMD3_uc003yns.2_Splice_Site_p.P2490_splice|CSMD3_uc003ynt.2_Splice_Site_p.P3248_splice|CSMD3_uc011lhx.1_Splice_Site_p.P3119_splice	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1							integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATCATACTTACGTAAGCACTG	0.388000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			10	12					0	0	0.069234	0	0
EFR3A	23167	broad.mit.edu	37	8	132998461	132998461	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr8:132998461G>A	uc003yte.2	+	17	2091	c.1890G>A	c.(1888-1890)ATG>ATA	p.M630I		NM_015137	NP_055952	Q14156	EFR3A_HUMAN	EFR3 homolog A	630						plasma membrane	binding			ovary(3)|breast(1)|central_nervous_system(1)	5	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)|LUAD - Lung adenocarcinoma(14;0.102)			TTCGAACTATGGAAGCCCCTT	0.333000													8	28					0	0	0.093190	0	0
DMRT3	58524	broad.mit.edu	37	9	990879	990879	+	Silent	SNP	A	G	G			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr9:990879A>G	uc003zgw.1	+	2	1331	c.1293A>G	c.(1291-1293)GAA>GAG	p.E431E		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	431					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		GCGCCACGGAAGACCCTCGGA	0.547000													38	42					0	0	0.080422	0	0
KGFLP2	654466	broad.mit.edu	37	9	41962666	41962666	+	RNA	SNP	T	G	G			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr9:41962666T>G	uc004aca.3	-	3		c.843A>C				NR_003670				Homo sapiens cDNA FLJ76381 complete cds.												0						CCTCCGTTGTTTGTCCATTTA	0.343000													3	20					0	0	0.115264	0	0
LOC442421	442421	broad.mit.edu	37	9	66499739	66499739	+	Silent	SNP	G	A	A	rs150502168	by1000genomes	TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr9:66499739G>A	uc004aee.1	+	1	549	c.549G>A	c.(547-549)CCG>CCA	p.P183P	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						GCCTGGGACCGTCCATTTTCG	0.602000													30	55					0	0	0.117977	0	0
LOC442421	442421	broad.mit.edu	37	9	66499794	66499794	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr9:66499794C>T	uc004aee.1	+	1	604	c.604C>T	c.(604-606)CGC>TGC	p.R202C	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						GTGCAAGTCGCGCAAGGAGCA	0.587000													16	56					0	0	0.059317	0	0
FLJ46321	389763	broad.mit.edu	37	9	84609948	84609948	+	Silent	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr9:84609948G>A	uc004amn.2	+	4	4610	c.4563G>A	c.(4561-4563)AGG>AGA	p.R1521R		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	1521						integral to membrane					0						TGCCCCACAGGAAGCCTGTGC	0.537000													10	16					0	0	0.058154	0	0
GRIN3A	116443	broad.mit.edu	37	9	104375733	104375733	+	Silent	SNP	A	G	G			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr9:104375733A>G	uc004bbp.1	-	6	3292	c.2691T>C	c.(2689-2691)CAT>CAC	p.H897H	GRIN3A_uc004bbq.1_Silent_p.H897H	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	897	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	CCATAAACCCATGTGACTTGT	0.458000													26	34					0	0	0.099896	0	0
AMBP	259	broad.mit.edu	37	9	116823799	116823799	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr9:116823799G>A	uc004bie.3	-	8	1021	c.758C>T	c.(757-759)TCC>TTC	p.S253F	AMBP_uc011lxk.1_Missense_Mutation_p.S194F|AMBP_uc010mvc.1_RNA	NM_001633	NP_001624	P02760	AMBP_HUMAN	alpha-1-microglobulin/bikunin preproprotein	253	BPTI/Kunitz inhibitor 1.				cell adhesion|female pregnancy|heme catabolic process|interspecies interaction between organisms|negative regulation of immune response|negative regulation of JNK cascade|protein-chromophore linkage	extracellular region|plasma membrane	calcium channel inhibitor activity|calcium oxalate binding|heme binding|IgA binding|protein homodimerization activity|serine-type endopeptidase inhibitor activity|transporter activity			skin(1)	1					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	ACAGGCCATGGATGTACCATT	0.547000													49	52					0	0	0.139131	0	0
ORM1	5004	broad.mit.edu	37	9	117085950	117085950	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr9:117085950G>A	uc004bik.3	+	2	233	c.122G>A	c.(121-123)GGC>GAC	p.G41D	ORM1_uc011lxo.1_Missense_Mutation_p.G41D	NM_000607	NP_000598	P02763	A1AG1_HUMAN	orosomucoid 1 precursor	41					acute-phase response|regulation of immune system process|transport	extracellular space	protein binding				0		Myeloproliferative disorder(63;0.163)			Acenocoumarol(DB01418)|Alfentanil(DB00802)|Aprindine(DB01429)|Disopyramide(DB00280)|Penbutolol(DB01359)|Phenprocoumon(DB00946)|Quinidine(DB00908)|Tamsulosin(DB00706)	CAGATCACTGGCAAGTGGTTT	0.368000													40	54					0	0	0.111260	0	0
CRB2	286204	broad.mit.edu	37	9	126132627	126132627	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr9:126132627G>A	uc004bnx.1	+	7	1387	c.1295G>A	c.(1294-1296)GGA>GAA	p.G432E	CRB2_uc004bnw.1_Missense_Mutation_p.G432E	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	432	Extracellular (Potential).|EGF-like 9.|Laminin G-like 1.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GGTACCCATGGACCGTTCTGT	0.627000													22	28					0	0	0.083992	0	0
ODF2	4957	broad.mit.edu	37	9	131256911	131256911	+	Silent	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr9:131256911C>T	uc011mbd.1	+	17	2186	c.1875C>T	c.(1873-1875)ATC>ATT	p.I625I	ODF2_uc011maz.1_Silent_p.I625I|ODF2_uc011mbc.1_Silent_p.I544I|ODF2_uc004bva.2_Silent_p.I578I|ODF2_uc004bvb.2_Silent_p.I601I|ODF2_uc011mbe.1_Silent_p.I620I|ODF2_uc004bvc.2_Silent_p.I601I|ODF2_uc011mbf.1_Silent_p.I606I|ODF2_uc004bvd.3_Silent_p.I625I|ODF2_uc004bve.2_Silent_p.I606I|ODF2_uc004bvh.2_5'Flank	NM_002540	NP_002531	Q5BJF6	ODFP2_HUMAN	outer dense fiber of sperm tails 2 isoform 1	625	Potential.				cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centriole|cilium|cytosol|microtubule|spindle pole	protein binding|structural molecule activity			ovary(1)	1						GGAAGAACATCGACCTCACAG	0.597000													26	32					0	0	0.108266	0	0
ZMYM3	9203	broad.mit.edu	37	X	70467680	70467680	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chrX:70467680C>A	uc004dzh.1	-	12	2139	c.2052G>T	c.(2050-2052)CAG>CAT	p.Q684H	BCYRN1_uc011mpt.1_Intron|ZMYM3_uc004dzi.1_Missense_Mutation_p.Q684H|ZMYM3_uc004dzj.1_Missense_Mutation_p.Q684H	NM_201599	NP_963893	Q14202	ZMYM3_HUMAN	zinc finger protein 261	684	MYM-type 8.				multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Renal(35;0.156)					GCTGGCAGGTCTGGGAGCAGT	0.527000													13	0					0.000219431	0.000252956	0.119110	1	0
MAGT1	84061	broad.mit.edu	37	X	77112989	77112989	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chrX:77112989G>T	uc004fof.2	-	4	554	c.492C>A	c.(490-492)AAC>AAA	p.N164K	MAGT1_uc004fog.3_RNA	NM_032121	NP_115497	Q9H0U3	MAGT1_HUMAN	magnesium transporter 1	132					protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				upper_aerodigestive_tract(1)	1						CTGAATTCATGTTTAGCTGAA	0.338000													5	62					2.17888e-05	2.52344e-05	0.058154	1	0
LPAR4	2846	broad.mit.edu	37	X	78010805	78010805	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chrX:78010805C>T	uc010nme.2	+	2	844	c.439C>T	c.(439-441)CGT>TGT	p.R147C		NM_005296	NP_005287	Q99677	LPAR4_HUMAN	lysophosphatidic acid receptor 4	147	Cytoplasmic (Potential).					integral to plasma membrane	lipid binding|purinergic nucleotide receptor activity, G-protein coupled			ovary(3)	3						TTTTCGATCTCGTACTATTAG	0.463000													54	4					0	0	0.139131	0	0
CUL5	8065	broad.mit.edu	37	11	107965175	107965176	+	In_Frame_Ins	INS	-	AAGTATCTG	AAGTATCTG			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr11:107965175_107965176insAAGTATCTG	uc001pjv.2	+	14	2168_2169	c.1501_1502insAAGTATCTG	c.(1501-1503)AAA>AAAGTATCTGAA	p.504_505insVSE	CUL5_uc001pju.2_RNA	NM_003478	NP_003469	Q93034	CUL5_HUMAN	Vasopressin-activated calcium-mobilizing	504_505					cell cycle arrest|cell proliferation|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process|viral reproduction	cullin-RING ubiquitin ligase complex|cytosol	calcium channel activity|receptor activity|ubiquitin protein ligase binding			ovary(1)	1		all_cancers(61;7.09e-10)|all_epithelial(67;2.97e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|Melanoma(852;4.48e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;3.58e-05)|Epithelial(105;4.68e-05)|all cancers(92;0.00122)|OV - Ovarian serous cystadenocarcinoma(223;0.217)		TCAGGACATAAAAGTATCTGAA	0.267													16	23	---	---	---	---					
MIR620	693205	broad.mit.edu	37	12	116586415	116586418	+	RNA	DEL	TATA	-	-	rs10549054		TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr12:116586415_116586418delTATA	hsa-mir-620|MI0003634	-			c.42_45delTATA			MED13L_uc001tvw.2_Intron																	0						tggagatatctatatatatatata	0.196													3	3	---	---	---	---					
PKMYT1	9088	broad.mit.edu	37	16	3023032	3023033	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr16:3023032_3023033delCT	uc002csn.2	-	9	1864_1865	c.1421_1422delAG	c.(1420-1422)GAGfs	p.E474fs	PAQR4_uc002csj.3_3'UTR|PAQR4_uc002csk.3_3'UTR|PAQR4_uc002csl.3_3'UTR|PAQR4_uc010uwm.1_3'UTR|PKMYT1_uc010uwn.1_RNA|PKMYT1_uc002csm.2_3'UTR|PKMYT1_uc002cso.2_Frame_Shift_Del_p.E405fs|PKMYT1_uc002csp.2_Frame_Shift_Del_p.E465fs|PKMYT1_uc002csq.2_Frame_Shift_Del_p.E465fs	NM_004203	NP_004194	Q99640	PMYT1_HUMAN	protein kinase Myt1 isoform 1	474	Interaction with CDC2-CCNB1.|Interaction with PIN1.				G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis	endoplasmic reticulum membrane|Golgi membrane|membrane fraction|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)	1						CCCGAGGAGGCTCTGAGTTGAT	0.609													27	26	---	---	---	---					
NOL4	8715	broad.mit.edu	37	18	31538307	31538307	+	Frame_Shift_Del	DEL	G	-	-			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr18:31538307delG	uc010dmi.2	-	7	1361	c.1132delC	c.(1132-1134)CTAfs	p.L378fs	NOL4_uc010xbs.1_Frame_Shift_Del_p.L93fs|NOL4_uc002kxr.3_Frame_Shift_Del_p.L214fs|NOL4_uc010xbt.1_Frame_Shift_Del_p.L304fs|NOL4_uc010dmh.2_Frame_Shift_Del_p.L304fs|NOL4_uc010xbu.1_Frame_Shift_Del_p.L378fs|NOL4_uc002kxt.3_Frame_Shift_Del_p.L378fs|NOL4_uc010xbv.1_Frame_Shift_Del_p.L127fs|NOL4_uc010xbw.1_Frame_Shift_Del_p.L264fs	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	378						nucleolus	RNA binding			ovary(3)	3						CCCCTGTTTAGTGAGAGGTCC	0.488													102	155	---	---	---	---					
ANKRD23	200539	broad.mit.edu	37	2	97508103	97508105	+	In_Frame_Del	DEL	TTC	-	-			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:97508103_97508105delTTC	uc002sxa.2	-	2	200_202	c.171_173delGAA	c.(169-174)AAGAAA>AAA	p.57_58KK>K	ANKRD23_uc002sxb.2_RNA|ANKRD23_uc002sxc.2_In_Frame_Del_p.57_58KK>K	NM_144994	NP_659431	Q86SG2	ANR23_HUMAN	diabetes related ankyrin repeat protein	57_58	Potential.					nucleus				ovary(1)	1						CTCTCTCACTTTCTTCTTCTTCT	0.635													15	37	---	---	---	---					
NEB	4703	broad.mit.edu	37	2	152496526	152496526	+	Frame_Shift_Del	DEL	A	-	-	rs6713162	by1000genomes	TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr2:152496526delA	uc010fnx.2	-	62	8925	c.8734delT	c.(8734-8736)TCCfs	p.S2912fs	NEB_uc002txu.2_Frame_Shift_Del_p.S16fs	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2912	Nebulin 79.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GAGCCAATGGACACCCAGCCA	0.393													38	74	---	---	---	---					
SREBF2	6721	broad.mit.edu	37	22	42262949	42262951	+	In_Frame_Del	DEL	GCA	-	-			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr22:42262949_42262951delGCA	uc003bbi.2	+	2	372_374	c.203_205delGCA	c.(202-207)GGCAGC>GGC	p.S74del	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	74	Gly/Pro/Ser-rich.|Cytoplasmic (Potential).				cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						ggcagcagtggcagcagcagcag	0.365													8	210	---	---	---	---					
IPO11	51194	broad.mit.edu	37	5	61763066	61763069	+	Frame_Shift_Del	DEL	GAAC	-	-			TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr5:61763066_61763069delGAAC	uc003jtc.2	+	6	815_818	c.625_628delGAAC	c.(625-630)GAACGAfs	p.E209fs	IPO11_uc011cqr.1_Frame_Shift_Del_p.E249fs|IPO11_uc003jtb.1_Frame_Shift_Del_p.E209fs	NM_016338	NP_057422	Q9UI26	IPO11_HUMAN	Ran binding protein 11 isoform 2	209_210	HEAT 2.					cytoplasm|nucleus	protein binding			lung(2)|skin(2)	4		Lung NSC(810;8.99e-06)|Prostate(74;0.0235)|Ovarian(174;0.0511)|Breast(144;0.077)		Lung(70;0.0613)		GAGTTCACTAGAACGAACACTGCT	0.377													20	84	---	---	---	---					
BHLHE22	27319	broad.mit.edu	37	8	65494021	65494023	+	In_Frame_Del	DEL	GCA	-	-	rs34265378		TCGA-FS-A1ZE-06A-11D-A197-08	TCGA-FS-A1ZE-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8bc90571-61b8-4672-91f8-ed87c1a4a1ab	28e16dcc-e820-4e52-a0dd-a6289195da53	g.chr8:65494021_65494023delGCA	uc003xvi.2	+	1	1208_1210	c.674_676delGCA	c.(673-678)GGCAGC>GGC	p.S234del	LOC401463_uc003xvh.2_Intron	NM_152414	NP_689627	Q8NFJ8	BHE22_HUMAN	basic helix-loop-helix domain containing, class	234	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						ggcagcggcggcagcagcagcag	0.202													2	4	---	---	---	---					
