Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
UBIAD1	29914	broad.mit.edu	37	1	11333715	11333715	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr1:11333715A>G	uc001asg.2	+	1	461	c.127A>G	c.(127-129)AGG>GGG	p.R43G		NM_013319	NP_037451	Q9Y5Z9	UBIA1_HUMAN	UbiA prenyltransferase domain containing 1	43					menaquinone biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrion|nucleus	prenyltransferase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000818)|all_lung(284;0.00105)|Colorectal(325;0.0062)|Breast(348;0.012)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.52e-06)|COAD - Colon adenocarcinoma(227;0.000254)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0487)		GCGCTCCTGGAGGCAGAAGTG	0.622000													8	13					0	0	0.000157383	0	0
CROCCL1	84809	broad.mit.edu	37	1	16952952	16952952	+	RNA	SNP	G	A	A	rs1762946	by1000genomes	TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr1:16952952G>A	uc010ocf.1	-	1		c.43C>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA|CROCCL1_uc001azg.1_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						TCTGCCCTCAGCTTGGTCACG	0.622000													5	18					0	0	1.23904e-05	0	0
MST1P2	11209	broad.mit.edu	37	1	16974511	16974511	+	RNA	SNP	G	A	A	rs58679574	by1000genomes	TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr1:16974511G>A	uc009vow.2	+	5		c.1321G>A			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_RNA|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						GGGTAGTCACGGGCTTAGGGC	0.652000													5	18					0	0	1.23904e-05	0	0
KIAA0467	23334	broad.mit.edu	37	1	43891516	43891516	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr1:43891516G>T	uc001cjk.1	+	6	761	c.299G>T	c.(298-300)CGG>CTG	p.R100L	KIAA0467_uc009vws.1_Missense_Mutation_p.R942L	NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	942						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CTCCACCCACGGGATGCTGCC	0.562000													4	31					3.59834e-05	0.00158073	3.59834e-05	1	0
HYI	81888	broad.mit.edu	37	1	43917105	43917105	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr1:43917105C>A	uc001cjo.2	-	7	906	c.736G>T	c.(736-738)GTG>TTG	p.V246L	KIAA0467_uc001cjk.1_3'UTR|KIAA0467_uc001cjl.1_3'UTR|HYI_uc001cjm.2_Missense_Mutation_p.V173L|HYI_uc001cjn.2_Missense_Mutation_p.V246L|HYI_uc001cjp.2_Missense_Mutation_p.V173L	NM_031207	NP_112484	Q5T013	HYI_HUMAN	hydroxypyruvate isomerase homolog	246							hydroxypyruvate isomerase activity			ovary(1)	1	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TCACAGCCCACGAAGCCTTTG	0.622000													17	21					9.16793e-09	4.26788e-07	5.01169e-05	1	0
ZFYVE9	9372	broad.mit.edu	37	1	52810462	52810462	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr1:52810462A>G	uc001cto.2	+	18	4134	c.3962A>G	c.(3961-3963)GAC>GGC	p.D1321G	ZFYVE9_uc001ctp.2_Missense_Mutation_p.D1262G	NM_004799	NP_004790	O95405	ZFYV9_HUMAN	zinc finger, FYVE domain containing 9 isoform 3	1321					endocytosis|SMAD protein complex assembly|SMAD protein import into nucleus|transforming growth factor beta receptor signaling pathway	early endosome membrane	metal ion binding|protein binding|receptor activity|serine-type peptidase activity			ovary(2)|lung(2)|central_nervous_system(2)|skin(2)	8						GAAAACGATGACCAGCACAAT	0.428000													3	40					0	0	6.4e-05	0	0
GPX7	2882	broad.mit.edu	37	1	53072382	53072382	+	Silent	SNP	C	T	T			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr1:53072382C>T	uc001cue.2	+	2	204	c.165C>T	c.(163-165)AGC>AGT	p.S55S		NM_015696	NP_056511	Q96SL4	GPX7_HUMAN	glutathione peroxidase 7 precursor	55					response to oxidative stress	extracellular region	glutathione peroxidase activity				0					Glutathione(DB00143)	ATGTGGCCAGCGAGTGCGGCT	0.572000													11	8					0	0	6.40141e-05	0	0
CRNN	49860	broad.mit.edu	37	1	152382519	152382519	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr1:152382519T>C	uc001ezx.2	-	3	1113	c.1039A>G	c.(1039-1041)ACT>GCT	p.T347A		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	347	Gln-rich.				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTATCTGAGTGTGTCCTCCT	0.592000													4	105					0	0	0.00024832	0	0
FAM129A	116496	broad.mit.edu	37	1	184868434	184868434	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr1:184868434C>G	uc001gra.2	-	2	258	c.64G>C	c.(64-66)GAG>CAG	p.E22Q	FAM129A_uc009wyh.1_Missense_Mutation_p.E22Q|FAM129A_uc009wyi.1_5'UTR	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	22					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						ATGGCAGCCTCAGTTTTCCCT	0.403000													3	22					0	0	6.4e-05	0	0
LMOD1	25802	broad.mit.edu	37	1	201868801	201868802	+	Missense_Mutation	DNP	AG	CT	CT			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr1:201868801_201868802AG>CT	uc001gxb.2	-	2	1587_1588	c.1339_1340CT>AG	c.(1339-1341)CTG>AGG	p.L447R	LMOD1_uc010ppu.1_Missense_Mutation_p.L396R	NM_012134	NP_036266	P29536	LMOD1_HUMAN	leiomodin 1 (smooth muscle)	447					muscle contraction	cytoskeleton|cytosol|membrane fraction	tropomyosin binding			ovary(1)|pancreas(1)|skin(1)	3						CAGCTTGAGCAGGGTAGTATTC	0.569000													5	6					0	0	6.4e-05	0	0
TAF1A	9015	broad.mit.edu	37	1	222734783	222734783	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr1:222734783C>A	uc009xdz.1	-	10	1352	c.1163G>T	c.(1162-1164)TGG>TTG	p.W388L	TAF1A_uc009xdy.1_Missense_Mutation_p.W79L|TAF1A_uc001hni.1_Missense_Mutation_p.W274L|TAF1A_uc001hnj.2_Missense_Mutation_p.W388L|TAF1A_uc001hnk.2_Missense_Mutation_p.W274L	NM_139352	NP_647603	Q15573	TAF1A_HUMAN	TBP-associated factor 1A isoform 2	388					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	RNA polymerase I transcription factor complex	DNA binding				0				GBM - Glioblastoma multiforme(131;0.0186)		ACTTTTTGCCCAAAAGTAGCT	0.408000													10	322					0.000219431	0.00937543	0.000219431	1	0
NLRP10	338322	broad.mit.edu	37	11	7982724	7982724	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr11:7982724C>A	uc001mfv.1	-	2	452	c.435G>T	c.(433-435)CAG>CAT	p.Q145H		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	145							ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		ACTCCAGCTCCTGCTCCGGGA	0.592000													16	18					2.31682e-05	0.00104727	2.31682e-05	1	0
PDHX	8050	broad.mit.edu	37	11	34991758	34991758	+	Missense_Mutation	SNP	A	C	C	rs146262415		TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr11:34991758A>C	uc001mvt.2	+	7	1415	c.889A>C	c.(889-891)ACT>CCT	p.T297P	PDHX_uc010rep.1_Missense_Mutation_p.T282P|PDHX_uc010req.1_Intron	NM_003477	NP_003468	O00330	ODPX_HUMAN	pyruvate dehydrogenase complex, component X	297					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	acyltransferase activity			kidney(1)	1	all_epithelial(35;0.115)|Lung NSC(22;0.218)|all_lung(20;0.242)	all_hematologic(20;0.124)	STAD - Stomach adenocarcinoma(6;0.00113)			ATCTAAAAGTACTGTACCTCA	0.393000													13	24					0	0	0.000219431	0	0
SLC22A12	116085	broad.mit.edu	37	11	64366364	64366364	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr11:64366364C>A	uc001oam.1	+	6	1786	c.1039C>A	c.(1039-1041)CGC>AGC	p.R347S	SLC22A12_uc009ypr.1_Missense_Mutation_p.R372S|SLC22A12_uc001oal.1_Missense_Mutation_p.R126S|SLC22A12_uc009yps.1_Missense_Mutation_p.R313S|SLC22A12_uc001oan.1_Missense_Mutation_p.R239S|SLC22A12_uc009ypt.2_Missense_Mutation_p.R165S	NM_144585	NP_653186	Q96S37	S22AC_HUMAN	urate anion exchanger 1 isoform a	347					cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			ovary(1)	1						GCCCGGACTGCGCTTCCGGAC	0.667000													10	12					3.07112e-06	0.000140865	6.40141e-05	1	0
RNFT2	84900	broad.mit.edu	37	12	117191806	117191806	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr12:117191806G>C	uc009zwn.2	+	5	801	c.568G>C	c.(568-570)GGG>CGG	p.G190R	RNFT2_uc001twb.3_Missense_Mutation_p.G190R|RNFT2_uc001twa.3_Missense_Mutation_p.G100R	NM_001109903	NP_001103373	Q96EX2	RNFT2_HUMAN	transmembrane protein 118 isoform 1	190	Helical; (Potential).					integral to membrane	zinc ion binding				0	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.034)		TGTGTGCATCGGGATGGCCAG	0.572000													3	66					0	0	6.4e-05	0	0
ANAPC5	51433	broad.mit.edu	37	12	121779838	121779839	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr12:121779838_121779839GG>TT	uc001uag.2	-	5	746_747	c.624_625CC>AA	c.(622-627)TCCCAA>TCAAAA	p.Q209K	ANAPC5_uc001uah.2_Missense_Mutation_p.Q110K	NM_016237	NP_057321	Q9UJX4	APC5_HUMAN	anaphase-promoting complex subunit 5 isoform a	209					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			skin(3)|breast(2)|kidney(1)	6	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GCTTGTTTTTGGGACAGAGGCC	0.322000													10	290					0	0	6.4e-05	0	0
REC8	9985	broad.mit.edu	37	14	24648843	24648843	+	Silent	SNP	C	G	G	rs11621624		TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr14:24648843C>G	uc001wmr.2	+	19	1789	c.1362C>G	c.(1360-1362)CCC>CCG	p.P454P	REC8_uc001wms.2_Silent_p.P454P	NM_005132	NP_005123	O95072	REC8_HUMAN	REC8 homolog	454	Glu-rich.				mitotic metaphase/anaphase transition|mitotic prometaphase|reciprocal meiotic recombination|sister chromatid cohesion	nucleoplasm					0				GBM - Glioblastoma multiforme(265;0.00839)		CTGCATTGCCCGTGGTGCCTG	0.617000													3	27					0	0	0.00024832	0	0
ZBTB1	22890	broad.mit.edu	37	14	64988483	64988483	+	Silent	SNP	T	A	A			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr14:64988483T>A	uc001xhh.3	+	4	692	c.261T>A	c.(259-261)ATT>ATA	p.I87I	ZBTB1_uc010aqg.2_Silent_p.I87I|ZBTB1_uc001xhi.2_Silent_p.I87I	NM_001123329	NP_001116801	Q9Y2K1	ZBTB1_HUMAN	zinc finger and BTB domain containing 1 isoform	87	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		all_lung(585;0.000567)|Myeloproliferative disorder(585;0.0255)|all_neural(303;0.0294)		UCEC - Uterine corpus endometrioid carcinoma (185;0.0182)|all cancers(60;3.78e-43)|OV - Ovarian serous cystadenocarcinoma(108;1.22e-20)|BRCA - Breast invasive adenocarcinoma(234;6.75e-06)|KIRC - Kidney renal clear cell carcinoma(182;0.00269)|STAD - Stomach adenocarcinoma(64;0.012)		TAGGAAAAATTATGACAGCTC	0.373000													22	43					0	0	0.000229342	0	0
C14orf145	145508	broad.mit.edu	37	14	81223261	81223261	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr14:81223261G>C	uc001xux.2	-	17	2759	c.2588C>G	c.(2587-2589)CCA>CGA	p.P863R	C14orf145_uc010asz.1_RNA	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	863						centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		CCAGCGATGTGGGTCATAATG	0.289000													3	41					0	0	6.4e-05	0	0
BDKRB2	624	broad.mit.edu	37	14	96706816	96706816	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr14:96706816G>C	uc010avm.1	+	3	347	c.151G>C	c.(151-153)GAG>CAG	p.E51Q	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Missense_Mutation_p.E24Q|BDKRB2_uc001yfg.2_Missense_Mutation_p.E51Q	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	51	Extracellular (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		CCCCCAAGTGGAGTGGCTGGG	0.572000													3	58					0	0	0.00024832	0	0
C14orf68	283600	broad.mit.edu	37	14	100793541	100793541	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr14:100793541G>C	uc001yhc.2	+	4	234	c.161G>C	c.(160-162)CGG>CCG	p.R54P	C14orf68_uc001yhd.2_5'UTR	NM_207117	NP_997000	Q6Q0C1	S2547_HUMAN	chromosome 14 open reading frame 68	54	Solcar 1.|Helical; Name=2; (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0		Melanoma(154;0.152)				GGCTTCTACCGGGGCCTCTCG	0.617000													3	50					0	0	0.00024832	0	0
ABCA3	21	broad.mit.edu	37	16	2376271	2376271	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr16:2376271C>G	uc002cpy.1	-	5	771	c.59G>C	c.(58-60)CGG>CCG	p.R20P	ABCA3_uc010bsk.1_Missense_Mutation_p.R20P|ABCA3_uc010bsl.1_Missense_Mutation_p.R20P|ABCA3_uc002cpz.1_Missense_Mutation_p.R20P	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	20					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				CAGGACCTTCCGCTTCTGGAA	0.567000													3	27					0	0	6.4e-05	0	0
NMRAL1	57407	broad.mit.edu	37	16	4511935	4511935	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr16:4511935A>G	uc002cwm.2	-	6	902	c.746T>C	c.(745-747)CTT>CCT	p.L249P	NMRAL1_uc002cwn.2_Missense_Mutation_p.L249P|NMRAL1_uc002cwo.2_Missense_Mutation_p.L249P|NMRAL1_uc002cwp.2_Missense_Mutation_p.L285P	NM_020677	NP_065728	Q9HBL8	NMRL1_HUMAN	NmrA-like family domain containing 1	249						nucleus|perinuclear region of cytoplasm	binding			kidney(1)	1						GGGAAAGCCAAGCTTTTCGTA	0.647000													27	29					0	0	0.000147802	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76555154	76555154	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr16:76555154G>C	uc002feu.1	+	18	2868	c.2483G>C	c.(2482-2484)GGG>GCG	p.G828A	CNTNAP4_uc002fev.1_Missense_Mutation_p.G692A|CNTNAP4_uc010chb.1_Missense_Mutation_p.G755A|CNTNAP4_uc002fex.1_Missense_Mutation_p.G831A	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	828	Extracellular (Potential).|Laminin G-like 3.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GCTTCATCTGGGGTATTTTTA	0.398000													4	151					0	0	1.23904e-05	0	0
TUBB3	10381	broad.mit.edu	37	16	89985811	89985811	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr16:89985811G>C	uc002fpf.2	+	1	553	c.145G>C	c.(145-147)GGG>CGG	p.G49R	MC1R_uc002fpe.3_Missense_Mutation_p.G49R|TUBB3_uc010ciz.1_5'Flank	NM_006086	NP_006077	Q13509	TBB3_HUMAN	tubulin, beta, 4	Error:Variant_position_missing_in_Q13509_after_alignment					'de novo' posttranslational protein folding|axon guidance|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(2)|pancreas(1)	3		all_cancers(9;1.69e-11)|Lung NSC(15;8.94e-06)|all_lung(18;1.39e-05)|all_neural(9;0.00581)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		CCTCAGCCTGGGGCTGGTGAG	0.647000													3	18					0	0	6.4e-05	0	0
MBTD1	54799	broad.mit.edu	37	17	49270312	49270312	+	Silent	SNP	A	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr17:49270312A>G	uc002itr.3	-	15	1865	c.1521T>C	c.(1519-1521)CGT>CGC	p.R507R	MBTD1_uc002itp.3_Silent_p.R343R|MBTD1_uc002itq.3_3'UTR	NM_017643	NP_060113	Q05BQ5	MBTD1_HUMAN	mbt domain containing 1	507	MBT 4.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(22;1.54e-08)			CACATATTAAACGTGGCTCCA	0.388000													48	67					0	0	0.000147903	0	0
CSH1	1442	broad.mit.edu	37	17	61972893	61972893	+	Silent	SNP	C	T	T			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr17:61972893C>T	uc002jcs.1	-	4	512	c.396G>A	c.(394-396)TCG>TCA	p.S132S	CSH2_uc002jck.2_Intron|CSH1_uc002jcp.1_Silent_p.S93S|CSH1_uc002jcq.1_Silent_p.S93S|CSH1_uc002jcr.1_3'UTR|CSH1_uc002jct.1_Silent_p.S98S|CSH1_uc002jcu.1_Silent_p.S132S|CSH1_uc002jcv.1_Intron|CSH1_uc002jcw.2_Silent_p.S132S|CSH1_uc002jcy.2_3'UTR	NM_001317	NP_001308	P01243	CSH_HUMAN	chorionic somatomammotropin hormone 1 isoform 1	132					female pregnancy|signal transduction	extracellular region	hormone activity|metal ion binding			skin(1)	1						CATCGCTGTCCGAGGTGTCAT	0.592000									Russell-Silver_syndrome				8	10					0	0	6.40141e-05	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74625601	74625601	+	Silent	SNP	C	T	T			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr17:74625601C>T	uc002jsh.2	-	2	498	c.324G>A	c.(322-324)CCG>CCA	p.P108P	ST6GALNAC1_uc002jsi.2_5'UTR|ST6GALNAC1_uc002jsj.2_RNA	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	108	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0						GCTCCTCCGGCGGTGCCTGGT	0.587000													15	16					0	0	0.000219431	0	0
L3MBTL4	91133	broad.mit.edu	37	18	5969390	5969390	+	Splice_Site	SNP	A	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr18:5969390A>G	uc002kmz.3	-	18	1801	c.1641_splice	c.e18+1	p.E547_splice	L3MBTL4_uc010dkt.2_Splice_Site_p.E547_splice|L3MBTL4_uc002kmy.3_Splice_Site_p.E376_splice	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4						chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				AGCTCCACTCACCTCATCCAC	0.622000													4	37					0	0	3.59834e-05	0	0
CXXC1	30827	broad.mit.edu	37	18	47812187	47812187	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr18:47812187T>A	uc002leq.3	-	5	1304	c.571A>T	c.(571-573)AAG>TAG	p.K191*	CXXC1_uc002lep.3_Nonsense_Mutation_p.K48*|CXXC1_uc002ler.3_Nonsense_Mutation_p.K191*|CXXC1_uc010doy.2_Nonsense_Mutation_p.K191*|CXXC1_uc002les.2_Nonsense_Mutation_p.K191*	NM_014593	NP_055408	Q9P0U4	CXXC1_HUMAN	CXXC finger 1 (PHD domain) isoform 2	191	CXXC-type.				histone H3-K4 methylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|Set1C/COMPASS complex	protein binding|unmethylated CpG binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						CCGAACTTCTTCATGTCCCGA	0.577000													15	18					0	0	5.01169e-05	0	0
ZNF254	9534	broad.mit.edu	37	19	24310294	24310294	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr19:24310294T>G	uc002nru.2	+	4	1626	c.1492T>G	c.(1492-1494)TCT>GCT	p.S498A	ZNF254_uc010xrk.1_Missense_Mutation_p.S413A	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	498	C2H2-type 11.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				ATGTGGCAAATCTTTTAGCCA	0.408000													3	38					0	0	6.4e-05	0	0
ZNF83	55769	broad.mit.edu	37	19	53116885	53116885	+	Silent	SNP	A	G	G	rs7247257		TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr19:53116885A>G	uc002pzu.3	-	2	2177	c.933T>C	c.(931-933)CAT>CAC	p.H311H	ZNF83_uc002pzv.3_Silent_p.H311H|ZNF83_uc010eps.2_Silent_p.H283H|ZNF83_uc010ept.2_Silent_p.H311H|ZNF83_uc010epu.2_Silent_p.H311H|ZNF83_uc010epv.2_Silent_p.H311H|ZNF83_uc010epw.2_Silent_p.H311H|ZNF83_uc010epx.2_Silent_p.H283H|ZNF83_uc010epy.2_Silent_p.H311H|ZNF83_uc010epz.2_Silent_p.H283H	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	311	C2H2-type 8.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		TCTCTCCAGTATGAATTCTCC	0.418000													3	69					0	0	6.4e-05	0	0
TMEM86B	255043	broad.mit.edu	37	19	55739565	55739565	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr19:55739565C>T	uc002qju.2	-	2	815	c.292G>A	c.(292-294)GTC>ATC	p.V98I	TMEM86B_uc002qjt.2_Missense_Mutation_p.V97I	NM_173804	NP_776165	Q8N661	TM86B_HUMAN	transmembrane protein 86B	98	Helical; (Potential).				ether lipid metabolic process	cytoplasmic part|integral to membrane	alkenylglycerophosphocholine hydrolase activity|alkenylglycerophosphoethanolamine hydrolase activity				0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0443)		TCACCAGGGACGAAGGCTGCC	0.652000													8	8					0	0	2.17888e-05	0	0
KLF11	8462	broad.mit.edu	37	2	10192515	10192515	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr2:10192515C>G	uc002raf.1	+	4	1582	c.1420C>G	c.(1420-1422)CGG>GGG	p.R474G	KLF11_uc010yjc.1_Missense_Mutation_p.R457G	NM_003597	NP_003588	O14901	KLF11_HUMAN	Kruppel-like factor 11	474	C2H2-type 3.				apoptosis|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|regulation of transcription involved in S phase of mitotic cell cycle	nucleus	sequence-specific DNA binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.133)|OV - Ovarian serous cystadenocarcinoma(76;0.228)		GAAGCATGCCCGGCGCCACAT	0.612000													5	166					0	0	3.59834e-05	0	0
FAM179A	165186	broad.mit.edu	37	2	29240047	29240047	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr2:29240047C>G	uc010ezl.2	+	9	1423	c.1072C>G	c.(1072-1074)CGG>GGG	p.R358G	FAM179A_uc010ymm.1_Missense_Mutation_p.R358G|FAM179A_uc002rmr.3_Intron	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	358							binding			ovary(3)|skin(1)	4						CAAGTCTGCCCGGGAGAAGAT	0.493000													3	61					0	0	0.00024832	0	0
VPS54	51542	broad.mit.edu	37	2	64160813	64160813	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr2:64160813T>G	uc002scq.2	-	12	1896	c.1733A>C	c.(1732-1734)GAT>GCT	p.D578A	VPS54_uc002scp.2_Missense_Mutation_p.D566A|VPS54_uc002sco.2_Missense_Mutation_p.D63A|VPS54_uc010fct.2_Missense_Mutation_p.D425A	NM_016516	NP_057600	Q9P1Q0	VPS54_HUMAN	vacuolar protein sorting 54 isoform 1	578					protein transport|retrograde transport, endosome to Golgi						0						TCACATAATATCCACACCTCC	0.388000													13	21					0	0	5.01169e-05	0	0
MBD5	55777	broad.mit.edu	37	2	149247828	149247828	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr2:149247828C>T	uc002twm.3	+	12	4916	c.3928C>T	c.(3928-3930)CAA>TAA	p.Q1310*	MBD5_uc010zbs.1_Intron|MBD5_uc010fns.2_Nonsense_Mutation_p.Q1310*|MBD5_uc002two.2_Nonsense_Mutation_p.Q568*|MBD5_uc002twp.2_Nonsense_Mutation_p.Q360*	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1310						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		CACTGCAAAGCAAGACCTGGT	0.443000													21	25					0	0	0.000229342	0	0
ATRN	8455	broad.mit.edu	37	20	3515900	3515900	+	Silent	SNP	A	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr20:3515900A>G	uc002wim.2	+	2	501	c.411A>G	c.(409-411)AGA>AGG	p.R137R	ATRN_uc002wil.2_Silent_p.R137R	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	137	Extracellular (Potential).|CUB.				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						TAAATTACAGACTAACTGGAT	0.259000													21	35					0	0	0.000229342	0	0
NAA20	51126	broad.mit.edu	37	20	20013240	20013240	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr20:20013240A>G	uc002wrp.2	+	5	498	c.394A>G	c.(394-396)AGG>GGG	p.R132G	NAA20_uc002wrq.2_Intron|NAA20_uc002wrr.2_Missense_Mutation_p.R120G	NM_016100	NP_057184	P61599	NAA20_HUMAN	N-acetyltransferase 5 isoform a	132	N-acetyltransferase.					cytoplasm|nucleus	peptide alpha-N-acetyltransferase activity				0						CAGTGTATATAGGACGGTCAT	0.443000													3	67					0	0	6.4e-05	0	0
PIGU	128869	broad.mit.edu	37	20	33176297	33176297	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr20:33176297G>C	uc002xas.2	-	8	942	c.742C>G	c.(742-744)CTC>GTC	p.L248V	PIGU_uc010zul.1_Missense_Mutation_p.L248V|PIGU_uc002xat.2_Missense_Mutation_p.L228V|PIGU_uc010gev.1_RNA	NM_080476	NP_536724	Q9H490	PIGU_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	248	Helical; (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|regulation of JAK-STAT cascade	GPI-anchor transamidase complex|plasma membrane					0						CAAGAGCTGAGAAGGAAGAAG	0.358000													10	15					0	0	6.40141e-05	0	0
ST13	6767	broad.mit.edu	37	22	41231636	41231637	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr22:41231636_41231637CG>AT	uc003aze.2	-	7	648_649	c.505_506CG>AT	c.(505-507)CGA>ATA	p.R169I	ST13_uc011aow.1_Missense_Mutation_p.R159I	NM_003932	NP_003923	P50502	F10A1_HUMAN	heat shock 70kD protein binding protein	169	TPR 2.						protein binding, bridging				0						GTCACAGTCTCGGATGGCAGCA	0.366000													8	467					0	0	6.4e-05	0	0
HACL1	26061	broad.mit.edu	37	3	15614708	15614708	+	Silent	SNP	G	C	C	rs141990933		TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr3:15614708G>C	uc003caf.2	-	11	1111	c.951C>G	c.(949-951)CCC>CCG	p.P317P	HACL1_uc011avr.1_RNA|HACL1_uc011avs.1_Silent_p.P290P|HACL1_uc011avt.1_Silent_p.P291P|HACL1_uc003cag.2_5'UTR|HACL1_uc011avu.1_Silent_p.P235P|HACL1_uc010hep.2_Silent_p.P76P	NM_012260	NP_036392	Q9UJ83	HACL1_HUMAN	2-hydroxyphytanoyl-CoA lyase	317					fatty acid alpha-oxidation	peroxisomal matrix	carbon-carbon lyase activity|identical protein binding|magnesium ion binding|thiamine pyrophosphate binding				0						AAGTAACAGCGGGCTTTACAT	0.358000													3	42					0	0	0.00024832	0	0
DHX30	22907	broad.mit.edu	37	3	47882497	47882497	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr3:47882497G>A	uc003cru.2	+	7	923	c.497G>A	c.(496-498)CGG>CAG	p.R166Q	DHX30_uc003crs.2_Missense_Mutation_p.R127Q|DHX30_uc003crt.2_Missense_Mutation_p.R127Q|DHX30_uc010hjr.1_Missense_Mutation_p.R194Q	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	166						mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		ACTTCCTGGCGGCAGCTGAAT	0.597000													5	8					0	0	1.23904e-05	0	0
ADAD1	132612	broad.mit.edu	37	4	123332531	123332531	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr4:123332531C>G	uc003ieo.2	+	9	1235	c.1003C>G	c.(1003-1005)CAG>GAG	p.Q335E	ADAD1_uc003iep.2_Missense_Mutation_p.Q324E|ADAD1_uc003ieq.2_Missense_Mutation_p.Q317E	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	335	A to I editase.				multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						AGGATCAGCCCAGATTAAGTC	0.333000													3	39					0	0	6.4e-05	0	0
ADCY2	108	broad.mit.edu	37	5	7789862	7789862	+	Silent	SNP	G	A	A			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr5:7789862G>A	uc003jdz.1	+	20	2644	c.2577G>A	c.(2575-2577)GTG>GTA	p.V859V	ADCY2_uc011cmo.1_Silent_p.V679V|ADCY2_uc010itm.1_Silent_p.V55V	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	859	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						TGGAGAACGTGCTTCCCGCGC	0.562000													11	62					0	0	3.86212e-05	0	0
GHR	2690	broad.mit.edu	37	5	42718721	42718721	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr5:42718721A>C	uc003jmt.2	+	10	1155	c.1112A>C	c.(1111-1113)GAG>GCG	p.E371A	GHR_uc011cpq.1_Missense_Mutation_p.E184A	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	371	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	AGTGACCATGAGAAATCACAT	0.433000													36	6					0	0	7.24521e-05	0	0
IQGAP2	10788	broad.mit.edu	37	5	75970327	75970327	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr5:75970327G>C	uc003kek.2	+	27	3542	c.3320G>C	c.(3319-3321)CGG>CCG	p.R1107P	IQGAP2_uc011csv.1_Missense_Mutation_p.R603P|IQGAP2_uc003kel.2_Missense_Mutation_p.R603P|IQGAP2_uc010izw.1_5'UTR	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	1107	Ras-GAP.				small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		CTGTACTATCGGTACATGAAT	0.388000													4	41					0	0	8.12818e-05	0	0
APC	324	broad.mit.edu	37	5	112173801	112173801	+	Nonsense_Mutation	SNP	C	G	G	rs79512956		TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr5:112173801C>G	uc010jby.2	+	16	2890	c.2510C>G	c.(2509-2511)TCA>TGA	p.S837*	APC_uc011cvt.1_Nonsense_Mutation_p.S819*|APC_uc003kpz.3_Nonsense_Mutation_p.S837*|APC_uc003kpy.3_Nonsense_Mutation_p.S837*|APC_uc010jbz.2_Nonsense_Mutation_p.S554*|APC_uc010jca.2_Nonsense_Mutation_p.S137*	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	837	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		TCCTCTTCATCAAGAGGAAGC	0.398000		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			22	22					0	0	0.000229342	0	0
PCDHB14	56122	broad.mit.edu	37	5	140604055	140604055	+	Silent	SNP	T	C	C			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr5:140604055T>C	uc003ljb.2	+	1	978	c.978T>C	c.(976-978)GGT>GGC	p.G326G	PCDHB14_uc011dal.1_Silent_p.G173G	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	326	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATGGTGGGGGTCTTTCAGGAA	0.383000													6	47					0	0	3.59834e-05	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140750027	140750027	+	Silent	SNP	C	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr5:140750027C>G	uc003ljw.1	+	1	66	c.66C>G	c.(64-66)CTC>CTG	p.L22L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc011dat.1_Silent_p.L22L	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	22					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTTCCTGCTCTCTTTGTTAG	0.587000													3	21					0	0	0.00024832	0	0
HIST1H2BI	8346	broad.mit.edu	37	6	26273355	26273355	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr6:26273355C>G	uc003nhk.2	+	1	152	c.152C>G	c.(151-153)CCC>CGC	p.P51R	HIST1H3G_uc003nhi.2_5'Flank	NM_003525	NP_003516	P62807	H2B1C_HUMAN	histone cluster 1, H2bi	51					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding				0						CAGGTCCACCCCGACACCGGC	0.572000													5	167					0	0	8.12818e-05	0	0
STK38	11329	broad.mit.edu	37	6	36467713	36467713	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr6:36467713T>C	uc003omg.2	-	9	1477	c.889A>G	c.(889-891)ACC>GCC	p.T297A	STK38_uc003omh.2_Missense_Mutation_p.T297A|STK38_uc003omi.2_Missense_Mutation_p.T297A	NM_007271	NP_009202	Q15208	STK38_HUMAN	serine/threonine kinase 38	297	Protein kinase.				intracellular protein kinase cascade|negative regulation of MAP kinase activity	cytoplasm|MLL5-L complex	ATP binding|magnesium ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6						TTGTACCCGGTCTGCATGAAC	0.522000													7	62					0	0	8.12818e-05	0	0
GLP1R	2740	broad.mit.edu	37	6	39041404	39041404	+	Silent	SNP	C	T	T			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr6:39041404C>T	uc003ooj.3	+	7	742	c.682C>T	c.(682-684)CTG>TTG	p.L228L	GLP1R_uc003ooh.2_RNA|GLP1R_uc003ooi.2_RNA	NM_002062	NP_002053	P43220	GLP1R_HUMAN	glucagon-like peptide 1 receptor precursor	228	Helical; Name=3; (Potential).				activation of adenylate cyclase activity|cAMP-mediated signaling|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	glucagon receptor activity|peptide receptor activity, G-protein coupled			lung(3)|breast(1)|pancreas(1)	5					Exenatide(DB01276)|Glucagon recombinant(DB00040)	GAGCTGCCGCCTGGTGTTTCT	0.587000													26	34					0	0	0.000147802	0	0
FAM83B	222584	broad.mit.edu	37	6	54805115	54805115	+	Missense_Mutation	SNP	C	T	T	rs147775708	byFrequency	TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr6:54805115C>T	uc003pck.2	+	5	1462	c.1346C>T	c.(1345-1347)GCG>GTG	p.A449V		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	449										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					AATCGGCTTGCGCAGAGAAAA	0.463000													12	29					0	0	0.00010058	0	0
FKBP9	11328	broad.mit.edu	37	7	33042361	33042361	+	Silent	SNP	G	A	A			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr7:33042361G>A	uc003tdh.2	+	9	1627	c.1446G>A	c.(1444-1446)GAG>GAA	p.E482E	AVL9_uc011kai.1_Intron|FKBP9_uc011kak.1_RNA|FKBP9_uc011kal.1_Silent_p.E535E|FKBP9_uc011kam.1_Silent_p.E250E	NM_007270	NP_009201	O95302	FKBP9_HUMAN	FK506 binding protein 9 precursor	482					protein folding	endoplasmic reticulum|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			central_nervous_system(13)|ovary(1)	14			GBM - Glioblastoma multiforme(11;0.0156)			GCCTTCCTGAGGGGTACATGT	0.532000													16	3					0	0	3.45872e-05	0	0
CADPS2	93664	broad.mit.edu	37	7	122221289	122221289	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr7:122221289T>C	uc010lkp.2	-	7	1442	c.1279A>G	c.(1279-1281)AAA>GAA	p.K427E	CADPS2_uc003vkg.3_Missense_Mutation_p.K127E|CADPS2_uc010lkq.2_Missense_Mutation_p.K427E	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	427	C2.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						GTGAAGAGTTTCACTTTGACC	0.443000													4	87					0	0	0.00024832	0	0
PRKDC	5591	broad.mit.edu	37	8	48840367	48840367	+	Silent	SNP	A	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr8:48840367A>G	uc003xqi.2	-	20	2280	c.2223T>C	c.(2221-2223)ATT>ATC	p.I741I	PRKDC_uc003xqj.2_Silent_p.I741I|PRKDC_uc011ldh.1_Silent_p.I741I	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	741					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				CATCGAGTTCAATGATGTTGT	0.443000								NHEJ					9	16					0	0	2.17888e-05	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457264	110457264	+	Silent	SNP	G	C	C			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr8:110457264G>C	uc003yne.2	+	38	5270	c.5166G>C	c.(5164-5166)GTG>GTC	p.V1722V		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1722	IPT/TIG 9.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AACAGCTTGTGGATGTAGATC	0.443000										HNSCC(38;0.096)			4	131					0	0	3.59834e-05	0	0
FER1L6	654463	broad.mit.edu	37	8	125035704	125035704	+	Silent	SNP	C	T	T			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr8:125035704C>T	uc003yqw.2	+	18	2360	c.2154C>T	c.(2152-2154)GAC>GAT	p.D718D	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	718	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CTATCCCTGACGTTTTCATCT	0.527000													18	31					0	0	3.10358e-05	0	0
CYLC2	1539	broad.mit.edu	37	9	105765476	105765476	+	Silent	SNP	T	C	C			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr9:105765476T>C	uc004bbs.2	+	3	181	c.111T>C	c.(109-111)TTT>TTC	p.F37F		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	37	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				CCCTGTTATTTCCCAAACCAC	0.358000													16	40					0	0	9.7654e-05	0	0
C9orf84	158401	broad.mit.edu	37	9	114456569	114456569	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr9:114456569G>T	uc004bfr.2	-	23	3200	c.3065C>A	c.(3064-3066)TCA>TAA	p.S1022*	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfq.2_Nonsense_Mutation_p.S983*|C9orf84_uc010mug.2_Nonsense_Mutation_p.S933*	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	1022										ovary(2)	2						ATCTCTCTTTGAGGTCATTAA	0.328000													9	232					6.40141e-05	0.00277306	6.40141e-05	1	0
TNC	3371	broad.mit.edu	37	9	117808817	117808817	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr9:117808817A>C	uc004bjj.3	-	17	5359	c.4997T>G	c.(4996-4998)ATA>AGA	p.I1666R	TNC_uc010mvf.2_Intron	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1666	Fibronectin type-III 12.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						AAGTAGGGTTATTTCCAGTGG	0.473000													4	58					0	0	0.00024832	0	0
DMD	1756	broad.mit.edu	37	X	32486764	32486764	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chrX:32486764C>T	uc004dda.1	-	23	3257	c.3013G>A	c.(3013-3015)GAG>AAG	p.E1005K	DMD_uc004dcz.2_Missense_Mutation_p.E882K|DMD_uc004dcy.1_Missense_Mutation_p.E1001K|DMD_uc004ddb.1_Missense_Mutation_p.E997K|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1005	Spectrin 6.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TTCGACATCTCTTTCACAGTG	0.403000													22	4					0	0	4.16121e-05	0	0
GRIPAP1	56850	broad.mit.edu	37	X	48847416	48847416	+	Silent	SNP	C	T	T			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chrX:48847416C>T	uc004dly.1	-	7	599	c.564G>A	c.(562-564)CCG>CCA	p.P188P	GRIPAP1_uc004dlz.2_Silent_p.P78P|GRIPAP1_uc004dma.2_Silent_p.P135P	NM_020137	NP_064522	Q4V328	GRAP1_HUMAN	GRIP1 associated protein 1 isoform 1	188						early endosome				breast(2)|kidney(1)	3						CCTCTGCCAACGGCATGGGGG	0.597000													14	4					0	0	2.31682e-05	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106109035	106109035	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chrX:106109035T>G	uc004emo.2	+	16	2599	c.2434T>G	c.(2434-2436)TTA>GTA	p.L812V	MORC4_uc004emp.3_Intron	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	812						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						AGAGCTGTTTTTATCTTGTTA	0.328000													47	67					0	0	0.000125731	0	0
PLA2G2F	64600	broad.mit.edu	37	1	20465966	20465967	+	Frame_Shift_Del	DEL	GT	-	-			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr1:20465966_20465967delGT	uc009vpp.1	+	1	144_145	c.46_47delGT	c.(46-48)GTGfs	p.V16fs		NM_022819	NP_073730	Q9BZM2	PA2GF_HUMAN	phospholipase A2, group IIF	Error:Variant_position_missing_in_Q9BZM2_after_alignment					lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000247)|Lung NSC(340;0.000285)|Breast(348;0.000812)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;8.01e-05)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.000524)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)		CAAAAAGAAGGTGCTGGATAGA	0.579													2	4	---	---	---	---					
HECTD1	25831	broad.mit.edu	37	14	31602754	31602755	+	Frame_Shift_Ins	INS	-	T	T			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr14:31602754_31602755insT	uc001wrc.1	-	23	4194_4195	c.3705_3706insA	c.(3703-3708)GAACTTfs	p.E1235fs	HECTD1_uc001wrd.1_Frame_Shift_Ins_p.E750fs	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	1235_1236					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		GTGCCATAAAGTTCGAATCCAG	0.376													45	56	---	---	---	---					
HERC1	8925	broad.mit.edu	37	15	64039192	64039192	+	Frame_Shift_Del	DEL	G	-	-			TCGA-FS-A1ZG-06A-11D-A197-08	TCGA-FS-A1ZG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	12d3df2b-80aa-46ac-8a04-e7b0e9c45ff2	98ec11e7-b2e4-4c0f-9821-2440389ef54e	g.chr15:64039192delG	uc002amp.2	-	12	2593	c.2445delC	c.(2443-2445)CTCfs	p.L815fs	HERC1_uc010uil.1_Intron	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	815					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						CCTGCCTCCCGAGAATGCTGG	0.453													2	4	---	---	---	---					
