Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P2	11209	broad.mit.edu	37	1	16975005	16975005	+	RNA	SNP	C	T	T	rs75691517	by1000genomes	TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr1:16975005C>T	uc010och.1	+	7		c.1465C>T			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						GCCACGACTTCGCTCCCGCTC	0.632000													5	20					0	0	0.000978159	0	0
SNIP1	79753	broad.mit.edu	37	1	38005830	38005830	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr1:38005830C>T	uc001cbi.2	-	3	927	c.854G>A	c.(853-855)CGA>CAA	p.R285Q	SNIP1_uc010oid.1_RNA	NM_024700	NP_078976	Q8TAD8	SNIP1_HUMAN	Smad nuclear interacting protein	285	FHA.				production of miRNAs involved in gene silencing by miRNA	nucleus	protein binding			upper_aerodigestive_tract(1)|lung(1)	2		Myeloproliferative disorder(586;0.0393)				GCGGCGGTGTCGACCCAGTAG	0.468000													18	53					0	0	0.00074312	0	0
C1orf173	127254	broad.mit.edu	37	1	75055422	75055422	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr1:75055422T>G	uc001dgg.2	-	12	2288	c.2069A>C	c.(2068-2070)AAA>ACA	p.K690T	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.K484T	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	690	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AGAAACATGTTTCCCGGACTT	0.453000													66	72					0	0	0.000781405	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	G	G	rs146714035	by1000genomes	TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr1:145367739A>G	uc001end.3	+	85	10595	c.10560A>G	c.(10558-10560)AAA>AAG	p.K3520K	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3445											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ggaaggggaaaaaaagaaggg	0.244000													4	51					0	0	0.00116845	0	0
FAM78B	149297	broad.mit.edu	37	1	166135377	166135377	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr1:166135377T>C	uc001gdr.2	-	2	699	c.109A>G	c.(109-111)ACC>GCC	p.T37A	FAM78B_uc010plc.1_RNA	NM_001017961	NP_001017961	Q5VT40	FA78B_HUMAN	hypothetical protein LOC149297	37										central_nervous_system(1)|skin(1)	2	all_hematologic(923;0.0813)|Acute lymphoblastic leukemia(8;0.155)					ATGGGCGAGGTCTCCTCGATG	0.652000													5	7					0	0	0.000157383	0	0
PAPPA2	60676	broad.mit.edu	37	1	176709190	176709190	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr1:176709190C>A	uc001gkz.2	+	14	5173	c.4009C>A	c.(4009-4011)CAT>AAT	p.H1337N	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1337					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CCTTTTCCACCATACCACCTC	0.488000													24	126					3.6726e-16	3.71059e-15	0.000586117	1	0
KIAA1614	57710	broad.mit.edu	37	1	180885324	180885324	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr1:180885324G>A	uc001gok.2	+	2	152	c.85G>A	c.(85-87)GTG>ATG	p.V29M		NM_020950	NP_066001	Q5VZ46	K1614_HUMAN	hypothetical protein LOC57710	29										ovary(3)|skin(1)	4						AGCCAGCCCCGTGGAGGGGAC	0.607000													11	47					0	0	0.000219431	0	0
PKP1	5317	broad.mit.edu	37	1	201286702	201286702	+	Silent	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr1:201286702C>T	uc001gwd.2	+	5	1100	c.849C>T	c.(847-849)GTC>GTT	p.V283V	PKP1_uc001gwe.2_Silent_p.V283V|PKP1_uc009wzm.2_5'UTR	NM_000299	NP_000290	Q13835	PKP1_HUMAN	plakophilin 1 isoform 1b	283	ARM 2.				cell adhesion|cellular component disassembly involved in apoptosis|multicellular organismal development	desmosome|intermediate filament|nucleus	intermediate filament binding|signal transducer activity|structural constituent of epidermis			ovary(2)	2						CCTGGCAGGTCTATCAGCTGG	0.547000													9	61					0	0	0.000978159	0	0
MARK1	4139	broad.mit.edu	37	1	220777410	220777410	+	Silent	SNP	T	G	G			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr1:220777410T>G	uc001hmn.3	+	6	1023	c.426T>G	c.(424-426)GGT>GGG	p.G142G	MARK1_uc009xdw.2_Silent_p.G142G|MARK1_uc010pun.1_Silent_p.G142G|MARK1_uc001hmm.3_Silent_p.G120G	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	142	Protein kinase.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		CTGATTCAGGTGAAGTATTTG	0.323000													12	96					0	0	0.000308642	0	0
NOLC1	9221	broad.mit.edu	37	10	103917932	103917932	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr10:103917932G>A	uc001kuo.2	+	5	803	c.568G>A	c.(568-570)GTG>ATG	p.V190M	NOLC1_uc001kup.2_Missense_Mutation_p.V190M|NOLC1_uc001kuq.2_Missense_Mutation_p.V191M|NOLC1_uc009xxb.1_Translation_Start_Site|NOLC1_uc001kur.2_Intron	NM_004741	NP_004732	Q14978	NOLC1_HUMAN	nucleolar and coiled-body phosphoprotein 1	190	11 X 12 AA approximate repeats of an acidic serine cluster.				mitosis|rRNA processing	cytoplasm|nucleolus	ATP binding|GTP binding|protein binding			ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;5.19e-08)|all cancers(201;9.43e-07)		GATAACACCTGTGACAGTTAA	0.512000													7	26					0	0	0.000157383	0	0
FRG2B	441581	broad.mit.edu	37	10	135439077	135439077	+	Silent	SNP	T	C	C	rs149978897	by1000genomes	TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr10:135439077T>C	uc010qvg.1	-	4	416	c.363A>G	c.(361-363)TCA>TCG	p.S121S		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	121						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		TTTTATTCAATGACAAGCTGC	0.517000													2	0					0	0	0.000274275	0	0
LOC653544	653544	broad.mit.edu	37	10	135491085	135491085	+	Silent	SNP	T	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr10:135491085T>A	uc010qvi.1	+	1	807	c.696T>A	c.(694-696)GGT>GGA	p.G232G		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	232						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CCGGCGGGGGTCACCCTGCTC	0.741000													6	34					0	0	0.000157383	0	0
POLA2	23649	broad.mit.edu	37	11	65036175	65036175	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr11:65036175T>A	uc001odj.2	+	4	671	c.329T>A	c.(328-330)TTG>TAG	p.L110*	POLA2_uc009yqf.1_Nonsense_Mutation_p.L110*|POLA2_uc010rod.1_5'UTR	NM_002689	NP_002680	Q14181	DPOA2_HUMAN	DNA-directed DNA polymerase alpha 2	110					DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	nucleoplasm	DNA binding				0					Dacarbazine(DB00851)	GAAATCCTCTTGAACTCTTAC	0.259000													13	16					0	0	0.00074312	0	0
PCF11	51585	broad.mit.edu	37	11	82879917	82879917	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr11:82879917G>A	uc001ozx.3	+	8	2885	c.2540G>A	c.(2539-2541)CGG>CAG	p.R847Q	PCF11_uc010rsu.1_Missense_Mutation_p.R978Q	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	847	Gly-rich.				mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						GGTGGTTTTCGGTTTGAAGGT	0.567000													16	28					0	0	0.000422831	0	0
PITPNM2	57605	broad.mit.edu	37	12	123482052	123482052	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr12:123482052C>T	uc001uej.1	-	10	1431	c.1292G>A	c.(1291-1293)GGA>GAA	p.G431E	PITPNM2_uc001uek.1_Missense_Mutation_p.G431E	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	431					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		GATGGTGCCTCCGTGCAGCAC	0.642000													25	46					0	0	0.000720815	0	0
LOC284232	284232	broad.mit.edu	37	13	19412486	19412486	+	RNA	SNP	G	A	A	rs140236254	by1000genomes	TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr13:19412486G>A	uc010tcj.1	-	1		c.33624C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						CTTCTACTTCGGAAATATCAG	0.348000													6	14					0	0	0.00116845	0	0
TEP1	7011	broad.mit.edu	37	14	20876172	20876172	+	Missense_Mutation	SNP	G	A	A	rs138848717		TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr14:20876172G>A	uc001vxe.2	-	2	467	c.427C>T	c.(427-429)CGT>TGT	p.R143C	TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.R143C	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	143					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		TTGTTCACACGGTACAAATCA	0.522000													4	93					0	0	0.00024832	0	0
CTSG	1511	broad.mit.edu	37	14	25043625	25043625	+	Silent	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr14:25043625C>T	uc001wpq.2	-	4	457	c.420G>A	c.(418-420)ACG>ACA	p.T140T		NM_001911	NP_001902	P08311	CATG_HUMAN	cathepsin G preproprotein	140	Peptidase S1.				immune response|proteolysis	cell surface|extracellular space|plasma membrane|stored secretory granule	heparin binding|serine-type endopeptidase activity	p.T140T(1)		ovary(2)	2				GBM - Glioblastoma multiforme(265;0.0269)		CAGTGCACAGCGTCCCGGGTC	0.612000													14	34					0	0	0.000422831	0	0
PNN	5411	broad.mit.edu	37	14	39648305	39648305	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr14:39648305G>A	uc001wuw.3	+	7	606	c.509G>A	c.(508-510)CGC>CAC	p.R170H		NM_002687	NP_002678	Q9H307	PININ_HUMAN	pinin, desmosome associated protein	170	Potential.|Necessary for interaction with RNPS1.				cell adhesion|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|desmosome|intermediate filament|nuclear speck	DNA binding|protein binding|structural molecule activity			ovary(1)	1	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0119)		CAAAAGCGGCGCCAGGAAATT	0.358000													12	27					0	0	0.000151284	0	0
AHNAK2	113146	broad.mit.edu	37	14	105408731	105408731	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr14:105408731C>T	uc010axc.1	-	7	13177	c.13057G>A	c.(13057-13059)GCT>ACT	p.A4353T	AHNAK2_uc001ypx.2_Missense_Mutation_p.A4253T	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4353						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TCCAGATCAGCGGAAGGGGGC	0.622000													29	68					0	0	0.00106085	0	0
SMAD6	4091	broad.mit.edu	37	15	67073772	67073772	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr15:67073772G>A	uc002aqf.2	+	4	2313	c.1390G>A	c.(1390-1392)GTC>ATC	p.V464I	SMAD6_uc010bhx.2_RNA|SMAD6_uc002aqg.2_Missense_Mutation_p.V203I	NM_005585	NP_005576	O43541	SMAD6_HUMAN	SMAD family member 6 isoform 1	464	MH2.				BMP signaling pathway|immune response|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of caspase activity|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of SMAD protein complex assembly|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of S phase of mitotic cell cycle|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	cytosol|transcription factor complex	co-SMAD binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I activin receptor binding|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding			skin(1)	1						CCCCAACAGCGTCCGCATCAG	0.682000													13	19					0	0	0.000219431	0	0
SNX33	257364	broad.mit.edu	37	15	75942635	75942635	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr15:75942635G>C	uc002bau.2	+	1	1288	c.1192G>C	c.(1192-1194)GTG>CTG	p.V398L	IMP3_uc002bat.2_5'Flank|SNX33_uc002bav.2_Missense_Mutation_p.V85L	NM_153271	NP_695003	Q8WV41	SNX33_HUMAN	sorting nexin 33	398	BAR.				cell communication		phosphatidylinositol binding|protein binding			ovary(1)	1						GCTCAGCACTGTGGCATCAGA	0.572000													7	23					0	0	0.000157383	0	0
TMC3	342125	broad.mit.edu	37	15	81625347	81625347	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr15:81625347C>G	uc002bgo.1	-	22	2716	c.2716G>C	c.(2716-2718)GAA>CAA	p.E906Q	TMC3_uc010blr.1_RNA	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	906	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						AAATGTCTTTCTGGCCAGACA	0.522000													17	44					0	0	0.000958276	0	0
CPEB1	64506	broad.mit.edu	37	15	83226697	83226697	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr15:83226697C>T	uc002bit.2	-	4	736	c.599G>A	c.(598-600)GGA>GAA	p.G200E	CPEB1_uc002biq.2_Missense_Mutation_p.G65E|CPEB1_uc002bir.2_Missense_Mutation_p.G65E|CPEB1_uc002bis.2_Missense_Mutation_p.G65E|CPEB1_uc010uod.1_Intron|CPEB1_uc010uoe.1_Missense_Mutation_p.G143E|CPEB1_uc002biu.2_Missense_Mutation_p.G167E|CPEB1_uc010uof.1_Missense_Mutation_p.G65E|CPEB1_uc002biv.2_Missense_Mutation_p.G140E|CPEB1_uc002bip.2_5'Flank	NM_001079533	NP_001073001	Q9BZB8	CPEB1_HUMAN	cytoplasmic polyadenylation element binding	140					mRNA processing|regulation of translation	cell junction|cytoplasmic mRNA processing body|dendrite|postsynaptic density|postsynaptic membrane	nucleotide binding|RNA binding			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(143;0.229)			GGGGGGTTTTCCTAGGACATT	0.522000													17	31					0	0	0.00121646	0	0
ZNF629	23361	broad.mit.edu	37	16	30794344	30794344	+	Silent	SNP	G	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr16:30794344G>A	uc002dzs.1	-	3	1513	c.1305C>T	c.(1303-1305)TGC>TGT	p.C435C		NM_001080417	NP_001073886	Q9UEG4	ZN629_HUMAN	zinc finger protein 629	435	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			Colorectal(24;0.198)			AGCTCTTGCCGCAGTCGGCGC	0.612000													29	36					0	0	0.00127121	0	0
KIF2B	84643	broad.mit.edu	37	17	51901912	51901912	+	Silent	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr17:51901912C>T	uc002iua.2	+	1	1674	c.1518C>T	c.(1516-1518)TCC>TCT	p.S506S	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	506					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						TCCGGGACTCCTTTATAGGCC	0.483000													9	40					0	0	0.000442599	0	0
KCNN4	3783	broad.mit.edu	37	19	44271811	44271811	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr19:44271811G>A	uc002oxl.2	-	8	1564	c.1168C>T	c.(1168-1170)CGG>TGG	p.R390W	KCNN4_uc010eiz.2_Missense_Mutation_p.R314W	NM_002250	NP_002241	O15554	KCNN4_HUMAN	intermediate conductance calcium-activated	390					defense response	voltage-gated potassium channel complex	calcium-activated potassium channel activity|calmodulin binding			ovary(2)	2		Prostate(69;0.0352)			Clotrimazole(DB00257)|Halothane(DB01159)|Quinine(DB00468)	TCCAGGGCCCGGTGTGAGCTG	0.622000													14	79					0	0	0.000308642	0	0
LILRB4	11006	broad.mit.edu	37	19	55176302	55176302	+	Splice_Site	SNP	T	G	G			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr19:55176302T>G	uc002qgp.2	+	5	1068	c.706_splice	c.e5+2	p.A236_splice	LILRB4_uc002qgq.2_Splice_Site_p.A236_splice|LILRB4_uc010ers.1_Silent_p.G149G|LILRB4_uc002qgr.2_Splice_Site_p.A277_splice|LILRB4_uc010ert.2_Splice_Site_p.A277_splice|LILRB4_uc010eru.2_Splice_Site_p.A265_splice	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,							integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		CAACAGCTGGTGAGTCTCAGA	0.572000													12	9					0	0	0.000978159	0	0
RQCD1	9125	broad.mit.edu	37	2	219447748	219447748	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr2:219447748T>C	uc010zkh.1	+	3	259	c.259T>C	c.(259-261)TCT>CCT	p.S87P	RQCD1_uc002vih.1_Missense_Mutation_p.S87P|RQCD1_uc010zki.1_Missense_Mutation_p.S87P	NM_005444	NP_005435	Q92600	RCD1_HUMAN	RCD1 required for cell differentiation1 homolog	87					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|sex differentiation|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(1)|skin(1)	2		Renal(207;0.0915)		Epithelial(149;1.13e-06)|all cancers(144;0.000192)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGCACACCAGTCTAACAGAGT	0.388000													17	41					0	0	0.000375601	0	0
DDX17	10521	broad.mit.edu	37	22	38881967	38881967	+	Silent	SNP	A	G	G			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr22:38881967A>G	uc003avy.3	-	13	2272	c.2169T>C	c.(2167-2169)CCT>CCC	p.P723P	DDX17_uc003avw.3_Silent_p.P175P|DDX17_uc010gxp.2_Silent_p.P173P|DDX17_uc003avx.3_Silent_p.P721P	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	642	Poly-Pro.				RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					gaggagggggaggaggaggag	0.363000													3	119					0	0	0.00024832	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654923	46654923	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr22:46654923T>C	uc003bhh.2	-	1	4297	c.4297A>G	c.(4297-4299)AGT>GGT	p.S1433G		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1433	Helical; (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		ATTAAGACACTTTCAATTCCT	0.343000													11	66					0	0	0.000978159	0	0
NUP210	23225	broad.mit.edu	37	3	13438970	13438970	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr3:13438970C>T	uc003bxv.1	-	3	406	c.323G>A	c.(322-324)CGC>CAC	p.R108H		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	108	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GGCATCACAGCGCAGGACCTG	0.622000													14	21					0	0	0.000566183	0	0
KBTBD5	131377	broad.mit.edu	37	3	42728091	42728091	+	Silent	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr3:42728091C>T	uc003clv.1	+	1	1081	c.981C>T	c.(979-981)GGC>GGT	p.G327G		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	327										ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		GTGAGGAGGGCGCTGTGGCCT	0.572000													12	29					0	0	0.000978159	0	0
IMPG2	50939	broad.mit.edu	37	3	101022994	101022994	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr3:101022994A>T	uc003duq.1	-	3	700	c.497T>A	c.(496-498)ATG>AAG	p.M166K	IMPG2_uc011bhe.1_Missense_Mutation_p.M29K	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	166	Extracellular (Potential).				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						ACTTACCTTCATGATTAAGCT	0.393000													17	40					0	0	0.00074312	0	0
PIK3R4	30849	broad.mit.edu	37	3	130405181	130405181	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr3:130405181C>T	uc003enj.2	-	15	3930	c.3349G>A	c.(3349-3351)GTG>ATG	p.V1117M		NM_014602	NP_055417	Q99570	PI3R4_HUMAN	phosphoinositide-3-kinase, regulatory subunit 4	1117	WD 3.				fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|breast(2)|skin(2)|stomach(1)|central_nervous_system(1)|kidney(1)	12						GAGCCATTCACAGTGGCATAG	0.463000													14	41					0	0	0.000151284	0	0
SERPINI2	5276	broad.mit.edu	37	3	167183148	167183148	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr3:167183148C>T	uc003fer.1	-	4	770	c.712G>A	c.(712-714)GAA>AAA	p.E238K	SERPINI2_uc003fes.1_Missense_Mutation_p.E248K|SERPINI2_uc003fet.1_Missense_Mutation_p.E238K	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	238					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						TAAGACAATTCTAAAACTTGG	0.313000													5	71					0	0	0.000602214	0	0
TP63	8626	broad.mit.edu	37	3	189349361	189349361	+	Silent	SNP	C	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr3:189349361C>A	uc003fry.2	+	1	146	c.57C>A	c.(55-57)ATC>ATA	p.I19I	TP63_uc003frx.2_Silent_p.I19I|TP63_uc003frz.2_Silent_p.I19I|TP63_uc010hzc.1_Silent_p.I19I	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	19	Transcription activation.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		ACCCTTACATCCAGCGGTGAG	0.398000									Hay-Wells_syndrome	HNSCC(45;0.13)			15	20					5.01169e-05	0.000473686	0.000566183	1	0
PCDH18	54510	broad.mit.edu	37	4	138451512	138451512	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr4:138451512T>C	uc003ihe.3	-	1	2118	c.1731A>G	c.(1729-1731)ATA>ATG	p.I577M	PCDH18_uc003ihf.3_Missense_Mutation_p.I570M|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.I357M|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	577	Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					ATGCAGGCCCTATAACCACAG	0.463000													3	171					0	0	6.4e-05	0	0
GLRB	2743	broad.mit.edu	37	4	158059985	158059985	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr4:158059985G>A	uc003ipj.2	+	7	837	c.635G>A	c.(634-636)CGA>CAA	p.R212Q		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	212	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	GATGATTTACGATTTATCTGG	0.249000													13	71					0	0	0.000308642	0	0
ZFP42	132625	broad.mit.edu	37	4	188924150	188924150	+	Silent	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr4:188924150C>T	uc003izg.1	+	3	434	c.189C>T	c.(187-189)CTC>CTT	p.L63L	ZFP42_uc003izh.1_Silent_p.L63L|ZFP42_uc003izi.1_Silent_p.L63L	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	63					female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		CTCAGGCTCTCGGAGGGGATG	0.512000													14	48					0	0	0.000308642	0	0
SSBP2	23635	broad.mit.edu	37	5	80762838	80762838	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr5:80762838G>T	uc003kho.2	-	9	804	c.593C>A	c.(592-594)CCC>CAC	p.P198H	SSBP2_uc010jar.2_Missense_Mutation_p.P86H|SSBP2_uc003khn.2_Missense_Mutation_p.P72H|SSBP2_uc003khp.2_Missense_Mutation_p.P206H|SSBP2_uc011ctp.1_Missense_Mutation_p.P178H|SSBP2_uc011ctq.1_Missense_Mutation_p.P176H|SSBP2_uc011ctr.1_Missense_Mutation_p.P168H	NM_012446	NP_036578	P81877	SSBP2_HUMAN	single-stranded DNA binding protein 2	198	Gly-rich.|Pro-rich.				regulation of transcription, DNA-dependent	cytoplasm|nucleus	single-stranded DNA binding		SSBP2/JAK2(4)	haematopoietic_and_lymphoid_tissue(4)|skin(1)	5		Lung NSC(167;0.00154)|all_lung(232;0.00179)|Ovarian(174;0.0338)		OV - Ovarian serous cystadenocarcinoma(54;1.07e-41)|Epithelial(54;2.79e-35)|all cancers(79;1.18e-29)		ATTCAGTGGGGGTCTCATTGC	0.393000													13	27					1.15088e-07	1.14307e-06	0.000422831	1	0
PCDHB12	56124	broad.mit.edu	37	5	140590562	140590562	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr5:140590562G>C	uc003liz.2	+	1	2272	c.2083G>C	c.(2083-2085)GCC>CCC	p.A695P	PCDHB12_uc011dak.1_Missense_Mutation_p.A358P|PCDHB13_uc003lja.1_5'Flank	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	695	Helical; (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGTGGCGTTGGCCTCAGTGTC	0.711000													22	76					0	0	0.000295444	0	0
C6orf222	389384	broad.mit.edu	37	6	36288968	36288968	+	Silent	SNP	T	G	G			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr6:36288968T>G	uc003oly.2	-	10	1810	c.1632A>C	c.(1630-1632)GCA>GCC	p.A544A		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	544										skin(2)|ovary(1)|breast(1)	4						CTTGGAGAAGTGCCACAAGCT	0.502000													10	1					0	0	0.000442599	0	0
RAC1	5879	broad.mit.edu	37	7	6439807	6439807	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr7:6439807T>G	uc003spx.2	+	4	517	c.276T>G	c.(274-276)AAT>AAG	p.N92K	RAC1_uc003spw.2_Missense_Mutation_p.N111K	NM_006908	NP_008839	P63000	RAC1_HUMAN	ras-related C3 botulinum toxin substrate 1	92					actin filament polymerization|apoptosis|axon guidance|cell motility|cell-matrix adhesion|induction of apoptosis by extracellular signals|inflammatory response|lamellipodium assembly|localization within membrane|negative regulation of interleukin-23 production|negative regulation of receptor-mediated endocytosis|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of lamellipodium assembly|positive regulation of Rho protein signal transduction|regulation of cell migration|regulation of defense response to virus by virus|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|ruffle organization|small GTPase mediated signal transduction|T cell costimulation|viral reproduction	cytosol|melanosome|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity|thioesterase binding			lung(2)	2		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.104)	Pravastatin(DB00175)|Simvastatin(DB00641)	CATTTGAAAATGTCCGTGCAA	0.338000													23	55					0	0	0.00127121	0	0
NDUFA4	4697	broad.mit.edu	37	7	10977742	10977742	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr7:10977742T>A	uc003srx.1	-	3	293	c.164A>T	c.(163-165)AAA>ATA	p.K55I		NM_002489	NP_002480	O00483	NDUA4_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	55					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0				UCEC - Uterine corpus endometrioid carcinoma (126;0.177)	NADH(DB00157)	GGGACCCAGTTTGTTCCAGGG	0.318000													13	36					0	0	0.000422831	0	0
C7orf31	136895	broad.mit.edu	37	7	25176283	25176283	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr7:25176283G>A	uc003sxn.1	-	10	1642	c.1081C>T	c.(1081-1083)CCT>TCT	p.P361S	C7orf31_uc003sxm.1_Missense_Mutation_p.P203S	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	361											0						AAAACTCTAGGAGTACAATCT	0.453000													26	56					0	0	0.000878237	0	0
RFC2	5982	broad.mit.edu	37	7	73646517	73646517	+	Silent	SNP	C	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr7:73646517C>A	uc003uaj.2	-	11	1009	c.984G>T	c.(982-984)GCG>GCT	p.A328A	RFC2_uc011kfa.1_RNA|RFC2_uc003uak.2_Silent_p.A294A|RFC2_uc010lbp.2_Silent_p.A257A|RFC2_uc003ual.2_Silent_p.A227A	NM_181471	NP_852136	P35250	RFC2_HUMAN	replication factor C 2 isoform 1	328					cell cycle checkpoint|DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|protein binding			liver(1)|central_nervous_system(1)	2						TCACTCCTTCCGCTATTTTCA	0.433000													4	48					0.000602214	0.00560155	0.000602214	1	0
RSBN1L	222194	broad.mit.edu	37	7	77325804	77325804	+	Silent	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr7:77325804C>T	uc010ldt.1	+	1	62	c.18C>T	c.(16-18)AGC>AGT	p.S6S	RSBN1L_uc003ugm.2_5'Flank|uc003ugj.1_RNA	NM_198467	NP_940869	Q6PCB5	RSBNL_HUMAN	round spermatid basic protein 1-like	6						nucleus				ovary(1)	1						AACCGCCGAGCCCCGTGCACT	0.692000													45	9					0	0	0.000781405	0	0
RNF148	378925	broad.mit.edu	37	7	122342619	122342619	+	Silent	SNP	G	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr7:122342619G>A	uc003vkk.1	-	1	403	c.186C>T	c.(184-186)TTC>TTT	p.F62F	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron|RNF148_uc010lkr.1_Intron	NM_198085	NP_932351	Q8N7C7	RN148_HUMAN	ring finger protein 148 precursor	62						integral to membrane	zinc ion binding				0						AATGATTCCCGAACACTCCAC	0.468000													13	24					0	0	0.000219431	0	0
DLGAP2	9228	broad.mit.edu	37	8	1624758	1624758	+	Silent	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr8:1624758C>T	uc003wpl.2	+	8	2119	c.2022C>T	c.(2020-2022)GTC>GTT	p.V674V	DLGAP2_uc003wpm.2_Silent_p.V660V	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	753					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		ACCACTCTGTCGGGGTGCAAG	0.542000													6	2					0	0	0.00116845	0	0
CSMD1	64478	broad.mit.edu	37	8	3081268	3081268	+	Silent	SNP	G	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr8:3081268G>A	uc011kwk.1	-	28	4860	c.4470C>T	c.(4468-4470)ATC>ATT	p.I1490I	CSMD1_uc011kwj.1_Silent_p.I882I|CSMD1_uc003wqe.2_Silent_p.I646I	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1490	Extracellular (Potential).|CUB 9.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ATATCAAGGCGATGACAAAGT	0.428000													21	62					0	0	0.000720815	0	0
EPPK1	83481	broad.mit.edu	37	8	144946344	144946344	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr8:144946344C>T	uc003zaa.1	-	1	1091	c.1078G>A	c.(1078-1080)GAG>AAG	p.E360K		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	360	Plectin 8.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			ACGGCCTGCTCGGCCACCAGG	0.662000													4	24					0	0	0.00024832	0	0
SMARCA2	6595	broad.mit.edu	37	9	2161877	2161877	+	Silent	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr9:2161877C>T	uc003zhc.2	+	28	4272	c.4173C>T	c.(4171-4173)ATC>ATT	p.I1391I	SMARCA2_uc003zhd.2_Silent_p.I1391I|SMARCA2_uc010mha.2_Silent_p.I1324I|SMARCA2_uc011llw.1_Silent_p.I95I|SMARCA2_uc003zhf.2_Silent_p.I55I|SMARCA2_uc011llx.1_Silent_p.I55I|SMARCA2_uc003zhe.2_Silent_p.I97I|SMARCA2_uc003zhg.2_Silent_p.I55I|SMARCA2_uc010mhb.2_Silent_p.I79I	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	1391					chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		ACGCTATCATCGATACTGTGA	0.488000													9	17					0	0	0.000274275	0	0
WNK2	65268	broad.mit.edu	37	9	95993181	95993181	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr9:95993181G>T	uc004ati.1	+	3	866	c.866G>T	c.(865-867)CGG>CTG	p.R289L	WNK2_uc011lud.1_Missense_Mutation_p.R289L|WNK2_uc004atj.2_Missense_Mutation_p.R289L|WNK2_uc010mrc.1_Missense_Mutation_p.R289L|WNK2_uc010mrd.1_5'UTR	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	289	Protein kinase.				intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						TACCTGAAGCGGTTCAAGGTG	0.622000													20	5					1.15919e-05	0.000111358	0.00121646	1	0
ZNF462	58499	broad.mit.edu	37	9	109689800	109689800	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr9:109689800C>T	uc004bcz.2	+	3	3896	c.3607C>T	c.(3607-3609)CGG>TGG	p.R1203W	ZNF462_uc010mto.2_Missense_Mutation_p.R1051W|ZNF462_uc004bda.2_Missense_Mutation_p.R1051W	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1203					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						TTATGGGAACCGGACGGTCAA	0.527000													161	122					0	0	0.000781405	0	0
ZBTB26	57684	broad.mit.edu	37	9	125681625	125681625	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr9:125681625T>C	uc004bnj.2	-	2	801	c.589A>G	c.(589-591)AAA>GAA	p.K197E	ZBTB26_uc004bnk.2_Missense_Mutation_p.K197E	NM_020924	NP_065975	Q9HCK0	ZBT26_HUMAN	zinc finger and BTB domain containing 26	197					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGATCTTTTTTACTTCTAACC	0.388000													12	39					0	0	0.000151284	0	0
ASMT	438	broad.mit.edu	37	X	1746653	1746653	+	Silent	SNP	G	A	A			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chrX:1746653G>A	uc004cqd.2	+	5	577	c.432G>A	c.(430-432)ACG>ACA	p.T144T	ASMT_uc010ncy.2_Silent_p.T144T|ASMT_uc004cqe.2_Silent_p.T144T	NM_004043	NP_004034	P46597	HIOM_HUMAN	acetylserotonin O-methyltransferase	144					melatonin biosynthetic process|translation	cytosol	acetylserotonin O-methyltransferase activity|S-methyltransferase activity			skin(1)	1		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				AGCTTTTTACGGCCATCTACA	0.378000													11	190					0	0	0.000219431	0	0
ZNF711	7552	broad.mit.edu	37	X	84526576	84526576	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chrX:84526576G>T	uc004eeo.2	+	9	2375	c.2028G>T	c.(2026-2028)TTG>TTT	p.L676F	ZNF711_uc004eep.2_Missense_Mutation_p.L676F|ZNF711_uc004eeq.2_Missense_Mutation_p.L722F|ZNF711_uc011mqy.1_Missense_Mutation_p.L275F	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	676	C2H2-type 10.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						ATCAGCCATTGAAATGTAAAA	0.373000													18	45					3.52763e-06	3.44532e-05	0.000566183	1	0
LOC653544	653544	broad.mit.edu	37	10	135491036	135491036	+	Frame_Shift_Del	DEL	G	-	-			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr10:135491036delG	uc010qvi.1	+	1	758	c.647delG	c.(646-648)AGGfs	p.R216fs		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	216						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CAGGGTGGCAGGGCGCCCGCG	0.736													7	93	---	---	---	---					
SIPA1	6494	broad.mit.edu	37	11	65414446	65414446	+	Frame_Shift_Del	DEL	G	-	-			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr11:65414446delG	uc001ofb.2	+	8	2108	c.1941delG	c.(1939-1941)CTGfs	p.L647fs	SIPA1_uc010rom.1_Frame_Shift_Del_p.L545fs|SIPA1_uc001ofd.2_Frame_Shift_Del_p.L647fs	NM_006747	NP_006738	Q96FS4	SIPA1_HUMAN	signal-induced proliferation-associated protein	647					cell proliferation|cytoskeleton organization|intracellular signal transduction|negative regulation of cell adhesion|negative regulation of cell cycle|negative regulation of cell growth	cytosol|endomembrane system|membrane|perinuclear region of cytoplasm	Rap GTPase activator activity				0						AGCAGCAGCTGGACCTGTACC	0.721													2	4	---	---	---	---					
MYO19	80179	broad.mit.edu	37	17	34883406	34883407	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr17:34883406_34883407delCT	uc010wcy.1	-	6	1267_1268	c.275_276delAG	c.(274-276)GAGfs	p.E92fs	MYO19_uc002hmw.2_Frame_Shift_Del_p.E92fs|MYO19_uc010cuu.2_RNA|MYO19_uc010wcz.1_RNA|MYO19_uc010wda.1_Intron|MYO19_uc002hmx.2_Frame_Shift_Del_p.E92fs	NM_001163735	NP_001157207	Q96H55	MYO19_HUMAN	myosin XIX isoform 2	92	Myosin head-like.					mitochondrial outer membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)	1		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		CAGCATGGTACTCTCTCATTAG	0.579													15	20	---	---	---	---					
NPHP3	27031	broad.mit.edu	37	3	132440872	132440873	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr3:132440872_132440873delAC	uc003epe.1	-	1	404_405	c.327_328delGT	c.(325-330)TTGTTGfs	p.L109fs	NCRNA00119_uc003epg.1_5'Flank|NPHP3_uc003epf.1_5'UTR|NCRNA00119_uc010htu.1_5'Flank	NM_153240	NP_694972	Q7Z494	NPHP3_HUMAN	nephrocystin 3	109_110	Potential.				maintenance of organ identity|negative regulation of canonical Wnt receptor signaling pathway|photoreceptor cell maintenance|regulation of Wnt receptor signaling pathway, planar cell polarity pathway|Wnt receptor signaling pathway	cilium	protein binding			ovary(1)	1						CCCATGGACAACAACTCCTGGT	0.673													13	36	---	---	---	---					
NOL8	55035	broad.mit.edu	37	9	95072931	95072932	+	Frame_Shift_Ins	INS	-	T	T			TCGA-FS-A1ZU-06A-12D-A196-08	TCGA-FS-A1ZU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fe8c62a6-c113-46e8-ab91-fdb90bb6a59f	7a49b1e5-5fb7-4a7e-85ba-f4c357089023	g.chr9:95072931_95072932insT	uc004arv.2	-	9	2835_2836	c.2498_2499insA	c.(2497-2499)AAGfs	p.K833fs	NOL8_uc010mqw.2_RNA|NOL8_uc004arw.2_Frame_Shift_Ins_p.K65fs|NOL8_uc011ltw.1_Frame_Shift_Ins_p.K765fs	NM_017948	NP_060418	Q76FK4	NOL8_HUMAN	nucleolar protein 8	833					DNA replication|positive regulation of cell growth	nucleolus	nucleotide binding|protein binding|RNA binding			ovary(1)	1						TATCAAACAGCTTCCCTGATGT	0.396													27	61	---	---	---	---					
