Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DFFB	1677	broad.mit.edu	37	1	3789135	3789135	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr1:3789135A>T	uc001alc.2	+	6	1104	c.781A>T	c.(781-783)ATA>TTA	p.I261L	DFFB_uc001ale.2_RNA|DFFB_uc009vlp.2_RNA|DFFB_uc001alb.2_RNA|DFFB_uc010nzn.1_Missense_Mutation_p.I285L|DFFB_uc009vlq.2_RNA|DFFB_uc009vlr.2_Missense_Mutation_p.I212L|DFFB_uc001ald.2_Missense_Mutation_p.I197L	NM_004402	NP_004393	O76075	DFFB_HUMAN	DNA fragmentation factor, 40 kD, beta	261					apoptotic chromosome condensation|DNA fragmentation involved in apoptotic nuclear change|intracellular signal transduction	cytosol|nucleoplasm	deoxyribonuclease activity|enzyme binding				0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_cancers(23;2.05e-30)|all_epithelial(116;6.22e-21)|all_lung(118;2.65e-08)|Lung NSC(185;6.25e-06)|Breast(487;0.000659)|Renal(390;0.00121)|all_neural(13;0.0019)|Hepatocellular(190;0.00705)|Colorectal(325;0.0113)|all_hematologic(16;0.0194)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0548)|Medulloblastoma(700;0.211)		Epithelial(90;1.18e-39)|OV - Ovarian serous cystadenocarcinoma(86;7.28e-23)|GBM - Glioblastoma multiforme(42;2.95e-17)|Colorectal(212;1.23e-05)|COAD - Colon adenocarcinoma(227;5.94e-05)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00038)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.124)		CCTGGATCACATGTAAGCTCA	0.393000													3	32					0	0	0.000602214	0	0
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr1:16918653C>T	uc009vos.1	-	6	853	c.-35_splice	c.e6+1		NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672							cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418000													19	68					0	0	0.000229342	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			79	38					0	0	0.000781405	0	0
ANKRD35	148741	broad.mit.edu	37	1	145558852	145558852	+	Silent	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr1:145558852G>A	uc001eob.1	+	7	579	c.471G>A	c.(469-471)CTG>CTA	p.L157L	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_5'UTR	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	157	ANK 4.									ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GTACACCCCTGATGATCGCAT	0.582000													68	208					0	0	0.000781405	0	0
ANKRD35	148741	broad.mit.edu	37	1	145560097	145560097	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr1:145560097G>A	uc001eob.1	+	8	691	c.583G>A	c.(583-585)GAG>AAG	p.E195K	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.E38K	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	195	ANK 5.									ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CCTGGCCTGTGAGAAAGGCAG	0.567000													24	88					0	0	0.00106085	0	0
HRNR	388697	broad.mit.edu	37	1	152191290	152191290	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr1:152191290C>T	uc001ezt.1	-	3	2891	c.2815G>A	c.(2815-2817)GGG>AGG	p.G939R		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	939	10.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGGACTGCCCTGAGCTAGAC	0.577000													156	459					0	0	0.000781405	0	0
OR6K2	81448	broad.mit.edu	37	1	158669743	158669743	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr1:158669743C>T	uc001fsu.1	-	1	700	c.700G>A	c.(700-702)GGC>AGC	p.G234S		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					GTGCGGCGGCCTCCAGCTGAA	0.468000													52	77					0	0	0.000781405	0	0
FMO1	2326	broad.mit.edu	37	1	171250049	171250049	+	Missense_Mutation	SNP	T	C	C	rs150268968	byFrequency	TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr1:171250049T>C	uc009wvz.2	+	6	888	c.752T>C	c.(751-753)ATT>ACT	p.I251T	FMO1_uc010pme.1_Missense_Mutation_p.I188T|FMO1_uc001ghl.2_Missense_Mutation_p.I251T|FMO1_uc001ghm.2_Missense_Mutation_p.I251T|FMO1_uc001ghn.2_Missense_Mutation_p.I251T	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	251					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CCAACCCCAATTGTGACTTGG	0.458000													25	93					0	0	0.000878237	0	0
STX6	10228	broad.mit.edu	37	1	180957437	180957437	+	Silent	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr1:180957437G>A	uc010pnq.1	-	6	771	c.534C>T	c.(532-534)GGC>GGT	p.G178G	STX6_uc001goo.2_Silent_p.G178G|STX6_uc010pnr.1_Silent_p.G77G	NM_005819	NP_005810	O43752	STX6_HUMAN	syntaxin 6	178	t-SNARE coiled-coil homology.|Cytoplasmic (Potential).				Golgi vesicle transport|intracellular protein transport|vesicle fusion	clathrin-coated vesicle|early endosome|integral to membrane|perinuclear region of cytoplasm|plasma membrane|trans-Golgi network membrane	SNAP receptor activity			ovary(1)	1						CCCCGATGCTGCCAGAGACCA	0.517000													41	119					0	0	0.000374591	0	0
DENND1B	163486	broad.mit.edu	37	1	197509108	197509108	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr1:197509108G>A	uc010ppe.1	-	19	1779	c.1441C>T	c.(1441-1443)CGT>TGT	p.R481C	DENND1B_uc010ppf.1_RNA	NM_001142795	NP_001136267	Q6P3S1	DEN1B_HUMAN	DENN/MADD domain containing 1B isoform 1	Error:Variant_position_missing_in_Q6P3S1_after_alignment						clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity				0						GCAAGCTTACGCTTTTCTGAG	0.348000													10	93					0	0	0.000442599	0	0
LOC441666	441666	broad.mit.edu	37	10	42832499	42832499	+	RNA	SNP	C	G	G			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr10:42832499C>G	uc010qey.1	-	3		c.1476G>C				NR_024380				Homo sapiens noncoding mRNA sequence.												0						TCTCCCCTATCAATTATGTTT	0.363000													3	3					0	0	6.4e-05	0	0
GBF1	8729	broad.mit.edu	37	10	104120107	104120107	+	Silent	SNP	C	T	T			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr10:104120107C>T	uc001kux.1	+	12	1584	c.1344C>T	c.(1342-1344)ACC>ACT	p.T448T	GBF1_uc001kuw.2_3'UTR|GBF1_uc001kuy.1_Silent_p.T448T|GBF1_uc001kuz.1_Silent_p.T449T	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	448					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		AGTGCCAGACCCTCTTGGGCC	0.537000													42	59					0	0	0.000437636	0	0
OR5F1	338674	broad.mit.edu	37	11	55761975	55761975	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr11:55761975G>T	uc010riv.1	-	1	127	c.127C>A	c.(127-129)CTC>ATC	p.L43I		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					ATCATCCCGAGATTTCCCAGT	0.428000													10	23					0.000673444	0.00870579	0.000673444	1	0
OR8A1	390275	broad.mit.edu	37	11	124439994	124439994	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr11:124439994C>G	uc010san.1	+	1	30	c.30C>G	c.(28-30)TGC>TGG	p.C10W		NM_001005194	NP_001005194	Q8NGG7	OR8A1_HUMAN	olfactory receptor, family 8, subfamily A,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		TGCATCCCTGCAGGCCTCCCA	0.522000													22	5					0	0	0.000229342	0	0
CD163L1	283316	broad.mit.edu	37	12	7528424	7528424	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr12:7528424C>T	uc001qsy.2	-	10	2584	c.2558G>A	c.(2557-2559)GGG>GAG	p.G853E	CD163L1_uc010sge.1_Missense_Mutation_p.G863E	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	853	SRCR 8.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TAGACCATTCCCTTTTCCAAA	0.448000													40	25					0	0	0.00111076	0	0
GRIN2B	2904	broad.mit.edu	37	12	13761663	13761663	+	Silent	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr12:13761663G>A	uc001rbt.2	-	9	2063	c.1884C>T	c.(1882-1884)TCC>TCT	p.S628S		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	628	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCATGATCTTGGAGGTGGTCC	0.522000													24	39					0	0	0.000586117	0	0
PDE3A	5139	broad.mit.edu	37	12	20806962	20806962	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr12:20806962T>G	uc001reh.1	+	15	3029	c.3007T>G	c.(3007-3009)TCC>GCC	p.S1003A		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	1003	Catalytic (By similarity).				lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	CCTTCAGGAATCCTTCATCTC	0.488000													35	30					0	0	0.000491102	0	0
KRT73	319101	broad.mit.edu	37	12	53009977	53009977	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr12:53009977C>T	uc001sas.2	-	2	670	c.635G>A	c.(634-636)CGC>CAC	p.R212H		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	212	Coil 1B.|Rod.		R -> H (in a colorectal cancer sample; somatic mutation).			keratin filament	structural molecule activity	p.R212H(1)		large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		CACCACTTCGCGCACGCTCCT	0.627000													28	70					0	0	0.000878237	0	0
APPL2	55198	broad.mit.edu	37	12	105589120	105589120	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr12:105589120G>A	uc001tlf.1	-	14	1378	c.1160C>T	c.(1159-1161)GCG>GTG	p.A387V	APPL2_uc010swt.1_Missense_Mutation_p.A344V|APPL2_uc001tlg.1_Missense_Mutation_p.A141V|APPL2_uc010swu.1_Missense_Mutation_p.A393V|APPL2_uc009zuq.2_Missense_Mutation_p.A344V	NM_018171	NP_060641	Q8NEU8	DP13B_HUMAN	adaptor protein, phosphotyrosine interaction, PH	387	Required for RAB5A binding (By similarity).				cell cycle|cell proliferation|signal transduction	early endosome membrane|nucleus	protein binding			upper_aerodigestive_tract(1)	1						CAACTTGATCGCGACTGCCTA	0.473000													12	25					0	0	0.000978159	0	0
RFX4	5992	broad.mit.edu	37	12	107048024	107048024	+	Silent	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr12:107048024G>A	uc001tlr.2	+	4	276	c.210G>A	c.(208-210)GAG>GAA	p.E70E	RFX4_uc010swv.1_RNA|RFX4_uc001tls.2_Silent_p.E79E|RFX4_uc001tlt.2_Silent_p.E79E	NM_213594	NP_998759	Q33E94	RFX4_HUMAN	regulatory factor X4 isoform c	70	|RFX-type winged-helix.				transcription, DNA-dependent	nucleus	DNA binding			upper_aerodigestive_tract(1)	1						AGAACTATGAGATTGCAGAGG	0.473000													23	47					0	0	0.00047179	0	0
FBXO21	23014	broad.mit.edu	37	12	117593596	117593596	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr12:117593596C>G	uc001twk.2	-	11	1735	c.1696G>C	c.(1696-1698)GAA>CAA	p.E566Q	FBXO21_uc001twj.2_Missense_Mutation_p.E559Q|FBXO21_uc009zwq.2_Missense_Mutation_p.E499Q|FBXO21_uc001twl.1_Missense_Mutation_p.G179R	NM_033624	NP_296373	O94952	FBX21_HUMAN	F-box only protein 21 isoform 1	566					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	ubiquitin-protein ligase activity			kidney(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0291)		CGCCGCTTACCTTGGGCTGCG	0.642000											OREG0022166	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	25					0	0	6.4e-05	0	0
CARKD	55739	broad.mit.edu	37	13	111289537	111289537	+	Silent	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr13:111289537G>A	uc001vrb.2	+	9	848	c.834G>A	c.(832-834)TCG>TCA	p.S278S	CARKD_uc010tjj.1_Silent_p.S260S|CARKD_uc001vqz.2_RNA|CARKD_uc001vra.2_RNA|CARKD_uc010tjk.1_Silent_p.S168S|CARKD_uc010tjl.1_Silent_p.S147S|CARKD_uc001vrc.2_Silent_p.S278S			Q8IW45	CARKD_HUMAN	RecName: Full=Carbohydrate kinase domain-containing protein; Flags: Precursor;	278	YjeF C-terminal.									skin(1)	1						ACCTCCTGTCGGGCTCCCTGG	0.587000													17	25					0	0	0.000566183	0	0
TMEM90A	646658	broad.mit.edu	37	14	74874582	74874582	+	Silent	SNP	C	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr14:74874582C>A	uc001xpx.2	-	3	776	c.528G>T	c.(526-528)CTG>CTT	p.L176L		NM_001105579	NP_001099049	A6NDD5	SYN1L_HUMAN	transmembrane protein 90A	176	Helical; (Potential).				response to biotic stimulus	Golgi apparatus|integral to membrane					0				BRCA - Breast invasive adenocarcinoma(234;0.00159)		CAGCAATGCCCAGTGGCCAGA	0.592000													9	35					3.86212e-05	0.000508512	0.000673444	1	0
SYNM	23336	broad.mit.edu	37	15	99669741	99669741	+	Silent	SNP	T	G	G			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr15:99669741T>G	uc002bup.2	+	6	1296	c.1176T>G	c.(1174-1176)GGT>GGG	p.G392G	SYNM_uc002buo.2_Silent_p.G392G|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	392	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						CTATTGGAGGTGATGCCAGAA	0.522000													110	146					0	0	0.000781405	0	0
MYH2	4620	broad.mit.edu	37	17	10428344	10428344	+	Silent	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr17:10428344G>A	uc010coi.2	-	34	4829	c.4701C>T	c.(4699-4701)ATC>ATT	p.I1567I	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.I1567I|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1567	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						ACTCAAGCTGGATGCGCAGGA	0.418000													76	3					0	0	0.000781405	0	0
SLC47A1	55244	broad.mit.edu	37	17	19480647	19480647	+	Silent	SNP	T	C	C			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr17:19480647T>C	uc002gvy.1	+	17	1580	c.1494T>C	c.(1492-1494)CCT>CCC	p.P498P	SLC47A1_uc002gvx.2_Silent_p.P498P|SLC47A1_uc010vyz.1_Nonstop_Mutation_p.*444R|SLC47A1_uc010cqp.1_Silent_p.P196P|SLC47A1_uc010cqq.1_Silent_p.P244P|SLC47A1_uc010vza.1_Silent_p.P210P|SLC47A1_uc010vzb.1_Silent_p.P173P|SLC47A1_uc010vzc.1_Silent_p.P170P	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	498	Cytoplasmic (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					CAGGGTGCCCTGAAAACCTTG	0.418000													3	73					0	0	6.4e-05	0	0
DNAI2	64446	broad.mit.edu	37	17	72278045	72278045	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr17:72278045A>G	uc002jkf.2	+	2	188	c.89A>G	c.(88-90)GAC>GGC	p.D30G	DNAI2_uc002jkg.2_RNA|DNAI2_uc010dfp.2_RNA	NM_023036	NP_075462	Q9GZS0	DNAI2_HUMAN	dynein, axonemal, intermediate polypeptide 2	30					cilium assembly	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	microtubule motor activity			ovary(2)|central_nervous_system(1)	3						CTGAACATCGACATCATGCCC	0.602000									Kartagener_syndrome				22	67					0	0	0.000175454	0	0
NAT9	26151	broad.mit.edu	37	17	72768379	72768379	+	Silent	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr17:72768379G>A	uc002jlq.2	-	5	446	c.372C>T	c.(370-372)GCC>GCT	p.A124A	NAT9_uc002jlr.2_Silent_p.A123A	NM_015654	NP_056469	Q9BTE0	NAT9_HUMAN	N-acetyltransferase 9	124	N-acetyltransferase.					protein complex	N-acetyltransferase activity				0						TCGCGAGAACGGCCTCAGTGC	0.468000													8	23					0	0	0.000274275	0	0
RPTOR	57521	broad.mit.edu	37	17	78882720	78882720	+	Silent	SNP	C	T	T			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr17:78882720C>T	uc002jyt.1	+	21	3316	c.2511C>T	c.(2509-2511)ATC>ATT	p.I837I	RPTOR_uc010wug.1_Silent_p.I679I	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	837					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						TCAACAGCATCGCCTACAAGG	0.582000													91	56					0	0	0.000781405	0	0
FCGBP	8857	broad.mit.edu	37	19	40367841	40367841	+	Silent	SNP	T	G	G			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr19:40367841T>G	uc002omp.3	-	29	13127	c.13119A>C	c.(13117-13119)GCA>GCC	p.A4373A		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4373	TIL 10.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TCGTAAGGGGTGCAGGGGACG	0.627000													11	24					0	0	0.000132079	0	0
SIGLEC14	100049587	broad.mit.edu	37	19	52146852	52146853	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr19:52146852_52146853CC>AT	uc002pxf.3	-	6	1205_1206	c.1085_1086GG>AT	c.(1084-1086)AGG>AAT	p.R362N		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	362	Helical; (Potential).			R->A: Loss of interaction with TYROBP.	cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		TGAGAGCCCCCCTGATCAGGGT	0.579000													34	34					0	0	6.4e-05	0	0
POTEE	445582	broad.mit.edu	37	2	132021477	132021477	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr2:132021477G>A	uc002tsn.2	+	15	2501	c.2449G>A	c.(2449-2451)GAG>AAG	p.E817K	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Missense_Mutation_p.E417K|POTEE_uc002tsl.2_Missense_Mutation_p.E399K|POTEE_uc010fmy.1_Missense_Mutation_p.E281K	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	817	Actin-like.						ATP binding				0						GGCCAACCGCGAGAAGATGAC	0.612000													40	122					0	0	0.000781405	0	0
CYTIP	9595	broad.mit.edu	37	2	158300486	158300486	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr2:158300486G>A	uc002tzj.1	-	1	119	c.47C>T	c.(46-48)GCG>GTG	p.A16V	CYTIP_uc010zcl.1_Intron	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	16					regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						GCAGAAGTCCGCCAAATTGCC	0.507000													41	63					0	0	0.000589545	0	0
ZNF804A	91752	broad.mit.edu	37	2	185798353	185798353	+	Silent	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr2:185798353G>A	uc002uph.2	+	3	873	c.279G>A	c.(277-279)AGG>AGA	p.R93R		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	93						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TGAAACAAAGGGAATTTGCTC	0.353000													29	39					0	0	0.000279167	0	0
ANKAR	150709	broad.mit.edu	37	2	190541666	190541666	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr2:190541666T>G	uc002uqw.1	+	1	237	c.237T>G	c.(235-237)ATT>ATG	p.I79M	ANKAR_uc002uqu.2_Intron|ANKAR_uc002uqv.1_Missense_Mutation_p.I150M	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	150						integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			TGATCAATATTGACTACATGC	0.388000													28	41					0	0	0.00106085	0	0
DGKD	8527	broad.mit.edu	37	2	234368894	234368894	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr2:234368894C>G	uc002vui.1	+	24	2896	c.2884C>G	c.(2884-2886)CGC>GGC	p.R962G	DGKD_uc002vuj.1_Missense_Mutation_p.R918G|DGKD_uc010fyi.1_RNA	NM_152879	NP_690618	Q16760	DGKD_HUMAN	diacylglycerol kinase, delta 130kDa isoform 2	962					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell growth|diacylglycerol metabolic process|endocytosis|epidermal growth factor receptor signaling pathway|multicellular organismal development|platelet activation|protein homooligomerization|protein transport|response to organic substance|second-messenger-mediated signaling	cytoplasm|cytoplasmic membrane-bounded vesicle|plasma membrane|plasma membrane	ATP binding|diacylglycerol binding|diacylglycerol kinase activity|metal ion binding|protein heterodimerization activity|protein homodimerization activity			central_nervous_system(2)|pancreas(1)|lung(1)|skin(1)	5		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0538)		Epithelial(121;1.31e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000416)|Lung(119;0.00285)|LUSC - Lung squamous cell carcinoma(224;0.00655)	Phosphatidylserine(DB00144)	CGAGCTGCCCCGCCCTCCATC	0.597000													25	47					0	0	0.000586117	0	0
FRG1B	284802	broad.mit.edu	37	20	29628300	29628300	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr20:29628300G>A	uc010ztl.1	+	3	244	c.212G>A	c.(211-213)AGT>AAT	p.S71N	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.S23N					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GAAGCAAAAAGTAAAACAGCA	0.358000													6	60					0	0	0.000157383	0	0
PMM1	5372	broad.mit.edu	37	22	41980568	41980568	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr22:41980568G>A	uc003bal.2	-	3	307	c.245C>T	c.(244-246)ACG>ATG	p.T82M		NM_002676	NP_002667	Q92871	PMM1_HUMAN	phosphomannomutase 1	82					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	cytosol	metal ion binding|phosphomannomutase activity			ovary(1)	1						ATACTGCACCGTCCCGTTCTC	0.547000													25	151					0	0	0.000184323	0	0
GRIA2	2891	broad.mit.edu	37	4	158224758	158224758	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr4:158224758A>C	uc003ipm.3	+	3	743	c.284A>C	c.(283-285)AAG>ACG	p.K95T	GRIA2_uc011cit.1_Missense_Mutation_p.K48T|GRIA2_uc003ipl.3_Missense_Mutation_p.K95T|GRIA2_uc003ipk.3_Missense_Mutation_p.K48T|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	95	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TATGACAAGAAGTCTGTAAAT	0.398000													45	89					0	0	0.000680045	0	0
PTGER4	5734	broad.mit.edu	37	5	40691977	40691977	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr5:40691977C>A	uc003jlz.2	+	3	1556	c.964C>A	c.(964-966)CCC>ACC	p.P322T		NM_000958	NP_000949	P35408	PE2R4_HUMAN	prostaglandin E receptor 4, subtype EP4	322	Helical; Name=7; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|immune response	integral to membrane|plasma membrane	prostaglandin E receptor activity			lung(2)	2						TTCTGTGAACCCCATCCTAGA	0.483000													27	48					8.53417e-09	1.14487e-07	0.000491102	1	0
NOTCH4	4855	broad.mit.edu	37	6	32163258	32163258	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr6:32163258G>A	uc003obb.2	-	30	6107	c.5968C>T	c.(5968-5970)CTC>TTC	p.L1990F	GPSM3_uc003oax.3_5'Flank|GPSM3_uc003oay.3_5'Flank|GPSM3_uc003oaz.2_5'UTR|NOTCH4_uc011dpt.1_3'UTR|NOTCH4_uc003oba.2_Missense_Mutation_p.L650F|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1990	Cytoplasmic (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						ATTTCTTGGAGGGCTGGGGGA	0.522000													169	221					0	0	0.000781405	0	0
PGK2	5232	broad.mit.edu	37	6	49753894	49753894	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr6:49753894C>A	uc003ozu.2	-	1	1114	c.1007G>T	c.(1006-1008)TGG>TTG	p.W336L		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	336					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					CGGCCCATTCCAAACAATTAG	0.483000													43	154					2.35958e-20	3.28954e-19	0.000437636	1	0
C7orf27	221927	broad.mit.edu	37	7	2583426	2583426	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr7:2583426G>A	uc003smi.2	-	5	643	c.601C>T	c.(601-603)CAC>TAC	p.H201Y	C7orf27_uc003smh.3_5'Flank|C7orf27_uc003smj.1_Missense_Mutation_p.H201Y	NM_152743	NP_689956	Q6PJG6	BRAT1_HUMAN	hypothetical protein LOC221927 precursor	201					response to ionizing radiation	nucleus	protein binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;2.91e-14)		TCTTCAACGTGATCCATGATC	0.672000													20	71					0	0	0.000586117	0	0
DLGAP2	9228	broad.mit.edu	37	8	1497675	1497675	+	Silent	SNP	G	A	A			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr8:1497675G>A	uc003wpl.2	+	2	913	c.816G>A	c.(814-816)TCG>TCA	p.S272S	DLGAP2_uc003wpm.2_Silent_p.S272S	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	351					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		TCAAGTGCTCGGCCTGTGAGG	0.662000													32	33					0	0	0.000279167	0	0
PTPN14	5784	broad.mit.edu	37	1	214557049	214557051	+	In_Frame_Del	DEL	CCT	-	-			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr1:214557049_214557051delCCT	uc001hkk.1	-	13	2418_2420	c.2147_2149delAGG	c.(2146-2151)GAGGCT>GCT	p.E716del	PTPN14_uc010pty.1_In_Frame_Del_p.E617del	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	716	Poly-Glu.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		GATTCTGGAGCCTCCTCCTCCTC	0.626													7	100	---	---	---	---					
LOC441666	441666	broad.mit.edu	37	10	42832502	42832503	+	RNA	INS	-	TATCA	TATCA			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr10:42832502_42832503insTATCA	uc010qey.1	-	3		c.1472_1473insTGATA				NR_024380				Homo sapiens noncoding mRNA sequence.												0						CCCCTATCAATTATGTTTAGTA	0.366													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	16415262	16415264	+	In_Frame_Del	DEL	GTG	-	-			TCGA-FS-A1ZY-06A-11D-A197-08	TCGA-FS-A1ZY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8c06caf8-b204-4030-9e44-26fda5232e1d	416e6d70-b904-473f-ad36-f94d8ad3cc2b	g.chr16:16415262_16415264delGTG	uc010vab.1	+	7	1782_1784	c.1180_1182delGTG	c.(1180-1182)GTGdel	p.V394del	uc002der.3_RNA					SubName: Full=cDNA FLJ59085, highly similar to Polycystin-1;																		GGGAGTCCCAGTGGTGAGTATGG	0.714													2	4	---	---	---	---					
