Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AADACL3	126767	broad.mit.edu	37	1	12779546	12779546	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:12779546C>T	uc009vnn.1	+	2	300	c.67C>T	c.(67-69)CCG>TCG	p.P23S	AADACL3_uc001aug.1_Intron	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	23							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		AGATCTGCCTCCGCTAAAGTA	0.483													43	66					0	0	0.010771	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12919002	12919002	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:12919002G>A	uc001aum.1	+	2	225	c.138G>A	c.(136-138)AGG>AGA	p.R46R		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	46											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CCTTCAGCAGGAGACACTTCC	0.592													23	58					0	0	0.014323	0	0
MST1P2	11209	broad.mit.edu	37	1	16974666	16974666	+	RNA	SNP	C	T	T	rs28503658	by1000genomes	TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:16974666C>T	uc010och.1	+	7		c.1126C>T			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CCAGATCCGGCGTTGTACAGA	0.697													9	48					0	0	0.010729	0	0
MST1P9	11223	broad.mit.edu	37	1	17087593	17087593	+	Silent	SNP	C	T	T	rs12145944	by1000genomes	TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:17087593C>T	uc010ock.1	-	2	72	c.72G>A	c.(70-72)CAG>CAA	p.Q24Q	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'Flank	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						ATGGCGAGCGCTGCCCTGCAG	0.577													4	52					0	0	0.009096	0	0
PADI6	353238	broad.mit.edu	37	1	17706448	17706448	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:17706448G>A	uc001bak.1	+	4	401	c.401G>A	c.(400-402)GGG>GAG	p.G134E		NM_207421	NP_997304	Q6TGC4	PADI6_HUMAN	peptidylarginine deiminase type 6	126					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	TACCGCAATGGGCAAGTTGAG	0.512													19	32					0	0	0.014323	0	0
EPHB2	2048	broad.mit.edu	37	1	23208919	23208919	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:23208919C>T	uc009vqj.1	+	6	1516	c.1371C>T	c.(1369-1371)TCC>TCT	p.S457S	EPHB2_uc001bge.2_Silent_p.S457S|EPHB2_uc001bgf.2_Silent_p.S457S|EPHB2_uc010odu.1_Silent_p.S457S	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	457	Fibronectin type-III 2.|Extracellular (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		TGTCGTGGTCCCAGCCGGACC	0.592									Hereditary_Prostate_Cancer				21	36					0	0	0.014323	0	0
HNRNPR	10236	broad.mit.edu	37	1	23645128	23645128	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:23645128G>A	uc001bgr.3	-	8	1024	c.865C>T	c.(865-867)CGG>TGG	p.R289W	HNRNPR_uc001bgp.3_Missense_Mutation_p.R292W|HNRNPR_uc009vqk.2_Missense_Mutation_p.R191W|HNRNPR_uc001bgs.3_Missense_Mutation_p.R188W|HNRNPR_uc010odw.1_Missense_Mutation_p.R251W|HNRNPR_uc010odx.1_Missense_Mutation_p.R129W|HNRNPR_uc009vql.2_Missense_Mutation_p.R150W	NM_005826	NP_005817	O43390	HNRPR_HUMAN	heterogeneous nuclear ribonucleoprotein R	289	RRM 2.					catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00394)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;6.83e-27)|Colorectal(126;6.01e-08)|COAD - Colon adenocarcinoma(152;3.32e-06)|GBM - Glioblastoma multiforme(114;6.69e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00357)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0875)|LUSC - Lung squamous cell carcinoma(448;0.19)		CAGAACCCCCGATTCTTCTTT	0.453													15	29					0	0	0.006122	0	0
PAFAH2	5051	broad.mit.edu	37	1	26301060	26301060	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:26301060G>A	uc001bld.3	-	9	1020	c.840C>T	c.(838-840)ATC>ATT	p.I280I	PAFAH2_uc001ble.3_Silent_p.I280I	NM_000437	NP_000428	Q99487	PAFA2_HUMAN	platelet-activating factor acetylhydrolase 2	280					lipid catabolic process	cytoplasm	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding			ovary(2)	2		Colorectal(325;3.47e-05)|Lung NSC(340;6.23e-05)|all_lung(284;9.48e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-25)|Colorectal(126;3.57e-08)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00155)|GBM - Glioblastoma multiforme(114;0.00717)|READ - Rectum adenocarcinoma(331;0.0649)		TCTCAGTATTGATAAAGAACA	0.463													14	27					0	0	0.003163	0	0
TXLNA	200081	broad.mit.edu	37	1	32653642	32653642	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:32653642G>A	uc001bui.2	+	5	750	c.685G>A	c.(685-687)GGT>AGT	p.G229S	TXLNA_uc001buj.2_Missense_Mutation_p.G229S	NM_175852	NP_787048	P40222	TXLNA_HUMAN	taxilin	229	Potential.				cell proliferation|exocytosis	cytoplasm|extracellular region	cytokine activity|high molecular weight B cell growth factor receptor binding			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				CCACCTGCGCGGTGAGCACAG	0.622													6	10					0	0	0.001984	0	0
CSMD2	114784	broad.mit.edu	37	1	34011788	34011788	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:34011788C>T	uc001bxn.1	-	56	8546	c.8517G>A	c.(8515-8517)GGG>GGA	p.G2839G	CSMD2_uc001bxm.1_Silent_p.G2983G	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2839	Extracellular (Potential).|Sushi 20.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GAGCCGGGATCCCAGGGTCAC	0.567													7	14					0	0	0.004482	0	0
C1orf168	199920	broad.mit.edu	37	1	57192203	57192203	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:57192203T>G	uc001cym.3	-	16	2253	c.1847A>C	c.(1846-1848)AAA>ACA	p.K616T	C1orf168_uc009vzu.1_RNA|C1orf168_uc001cyl.2_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	616										ovary(3)|skin(2)	5						TTTCTCTTTTTTTTCCTTTGG	0.313													5	7					0	0	0.001168	0	0
CYP2J2	1573	broad.mit.edu	37	1	60366767	60366767	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:60366767C>T	uc001czq.2	-	8	1205	c.1200G>A	c.(1198-1200)ATG>ATA	p.M400I		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	400					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					TGGTCAGGATCATGGTACCCT	0.547													11	24					0	0	0.002450	0	0
L1TD1	54596	broad.mit.edu	37	1	62672587	62672587	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:62672587C>T	uc001dae.3	+	3	589	c.287C>T	c.(286-288)TCC>TTC	p.S96F		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	96										ovary(1)|skin(1)	2						tcaGAGAACTCCAGTAGTAGG	0.05													28	38					0	0	0.010818	0	0
SFRS11	9295	broad.mit.edu	37	1	70715641	70715641	+	Silent	SNP	A	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:70715641A>G	uc001des.2	+	11	1153	c.1029A>G	c.(1027-1029)AGA>AGG	p.R343R	SFRS11_uc001det.2_Silent_p.R343R|SFRS11_uc001deu.2_Silent_p.R350R|SFRS11_uc001dev.2_Silent_p.R153R|SFRS11_uc001dew.2_Silent_p.R283R	NM_004768	NP_004759	Q05519	SRS11_HUMAN	splicing factor, arginine/serine-rich 11	343	Poly-Arg.|10 X 8 AA approximate repeats of R-R-S-R- S-R-S-R.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding				0						CTAGAGAGAGACGACGACGAA	0.398													3	20					0	0	0.004672	0	0
COL11A1	1301	broad.mit.edu	37	1	103381207	103381207	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:103381207G>A	uc001dul.2	-	50	4114	c.3796C>T	c.(3796-3798)CCT>TCT	p.P1266S	COL11A1_uc001duk.2_Missense_Mutation_p.P462S|COL11A1_uc001dum.2_Missense_Mutation_p.P1278S|COL11A1_uc001dun.2_Missense_Mutation_p.P1227S|COL11A1_uc009weh.2_Missense_Mutation_p.P1150S	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1266	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GCTTCCCCAGGAGGCCCTGGG	0.363													11	9					0	0	0.010729	0	0
COL11A1	1301	broad.mit.edu	37	1	103428225	103428225	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:103428225C>T	uc001dul.2	-	39	3326	c.3008G>A	c.(3007-3009)GGA>GAA	p.G1003E	COL11A1_uc001duk.2_Missense_Mutation_p.G199E|COL11A1_uc001dum.2_Missense_Mutation_p.G1015E|COL11A1_uc001dun.2_Missense_Mutation_p.G964E|COL11A1_uc009weh.2_Missense_Mutation_p.G887E	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1003	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		ACCTTCTTTTCCTGCAGCACC	0.473													13	13					0	0	0.004007	0	0
SORT1	6272	broad.mit.edu	37	1	109897060	109897060	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:109897060G>A	uc001dxm.1	-	5	686	c.637C>T	c.(637-639)CCT>TCT	p.P213S	SORT1_uc010ovi.1_Missense_Mutation_p.P77S|SORT1_uc009wfb.2_Missense_Mutation_p.P77S	NM_002959	NP_002950	Q99523	SORT_HUMAN	sortilin 1 preproprotein	213	Extracellular (Potential).				endocytosis|endosome to lysosome transport|endosome transport via multivesicular body sorting pathway|glucose import|Golgi to endosome transport|induction of apoptosis by extracellular signals|myotube differentiation|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|neuropeptide signaling pathway|ossification|plasma membrane to endosome transport|regulation of gene expression|response to insulin stimulus|vesicle organization	cell surface|coated pit|early endosome|endoplasmic reticulum membrane|endosome membrane|Golgi cisterna membrane|integral to membrane|lysosomal membrane|microsome|nuclear membrane|perinuclear region of cytoplasm|plasma membrane	enzyme binding|nerve growth factor binding|nerve growth factor receptor activity|neurotensin receptor activity, non-G-protein coupled			ovary(1)	1		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0529)|Colorectal(144;0.142)|Epithelial(280;0.145)|Kidney(133;0.169)|all cancers(265;0.184)		GGATGAAAAGGGAGATCTGTT	0.428													73	102					0	0	0.014410	0	0
KCND3	3752	broad.mit.edu	37	1	112318829	112318829	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:112318829G>A	uc001ebu.1	-	8	2318	c.1838C>T	c.(1837-1839)GCC>GTC	p.A613V	KCND3_uc001ebv.1_Missense_Mutation_p.A594V	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	613	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		GCTGATGATGGCTGTGGTGAT	0.557													17	15					0	0	0.008871	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	A	A	rs11554290		TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:115256529T>A	uc009wgu.2	-	3	436	c.182A>T	c.(181-183)CAA>CTA	p.Q61L		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			56	68					0	0	0.014410	0	0
NBPF9	400818	broad.mit.edu	37	1	144619403	144619403	+	Missense_Mutation	SNP	A	G	G	rs4067646		TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:144619403A>G	uc009wig.1	+	7	626	c.550A>G	c.(550-552)AAA>GAA	p.K184E	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Missense_Mutation_p.K184E|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Missense_Mutation_p.K115E|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Missense_Mutation_p.K115E|NBPF9_uc010oyg.1_Missense_Mutation_p.K149E|NBPF9_uc009wii.1_Intron	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	184	NBPF 1.					cytoplasm					0						GAAAGTGCAGAAATCATCTGC	0.413													4	182					0	0	0.000602	0	0
NOTCH2NL	388677	broad.mit.edu	37	1	145281564	145281564	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:145281564C>T	uc001emn.3	+	4	864	c.494C>T	c.(493-495)TCC>TTC	p.S165F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_5'UTR|NOTCH2NL_uc001emm.3_Missense_Mutation_p.S165F|NOTCH2NL_uc001emo.2_Missense_Mutation_p.S165F|NOTCH2NL_uc010oyh.1_RNA	NM_203458	NP_982283	Q7Z3S9	NT2NL_HUMAN	Notch homolog 2 N-terminal like protein	165	EGF-like 5; calcium-binding (Potential).				cell differentiation|multicellular organismal development|Notch signaling pathway	cytoplasm|extracellular region	calcium ion binding			ovary(1)	1						CTGCCTGGTTCCTACCAGTGC	0.577													63	591					0	0	0.014410	0	0
HRNR	388697	broad.mit.edu	37	1	152188374	152188374	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:152188374C>T	uc001ezt.1	-	3	5807	c.5731G>A	c.(5731-5733)GAA>AAA	p.E1911K		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1911	21.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCGTGTTGTTCACCCCTAGAT	0.557													34	861					0	0	0.009718	0	0
S100A7A	338324	broad.mit.edu	37	1	153390687	153390687	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:153390687C>T	uc001fbt.1	+	2	186	c.129C>T	c.(127-129)TTC>TTT	p.F43F		NM_176823	NP_789793	Q86SG5	S1A7A_HUMAN	S100 calcium binding protein A7-like 1	43	EF-hand 1.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			TCCCCAATTTCCTCAGTGCCT	0.413													24	40					0	0	0.003330	0	0
SPTA1	6708	broad.mit.edu	37	1	158606485	158606485	+	Silent	SNP	C	T	T	rs141683960	by1000genomes	TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:158606485C>T	uc001fst.1	-	37	5455	c.5256G>A	c.(5254-5256)CTG>CTA	p.L1752L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1752	Spectrin 17.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TGTGCTTCTTCAGCAAGTTCT	0.408													16	29					0	0	0.004990	0	0
OR6N1	128372	broad.mit.edu	37	1	158736021	158736021	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:158736021C>T	uc010piq.1	-	1	452	c.452G>A	c.(451-453)GGA>GAA	p.G151E		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					AGCCAAGCCTCCCAACCAACA	0.532													6	5					0	0	0.001984	0	0
FMO1	2326	broad.mit.edu	37	1	171227356	171227356	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:171227356A>C	uc009wvz.2	+	2	266	c.130A>C	c.(130-132)ACC>CCC	p.T44P	FMO1_uc010pme.1_Missense_Mutation_p.T44P|FMO1_uc001ghl.2_Missense_Mutation_p.T44P|FMO1_uc001ghm.2_Missense_Mutation_p.T44P|FMO1_uc001ghn.2_Missense_Mutation_p.T44P	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	44					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GTGGAGATTCACCGTAAGTGG	0.527													39	63					0	0	0.010771	0	0
FAM5B	57795	broad.mit.edu	37	1	177226513	177226513	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:177226513C>T	uc001glf.2	+	4	974	c.662C>T	c.(661-663)GCC>GTC	p.A221V	FAM5B_uc010pna.1_5'UTR|FAM5B_uc001glg.2_Missense_Mutation_p.A116V	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	221						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GCCACGGGGGCCATCAAGGTA	0.617													3	13					0	0	0.004672	0	0
CEP350	9857	broad.mit.edu	37	1	180034295	180034296	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:180034295_180034296CC>TT	uc001gnt.2	+	27	5838_5839	c.5455_5456CC>TT	c.(5455-5457)CCT>TTT	p.P1819F	CEP350_uc009wxl.2_Missense_Mutation_p.P1818F	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	1819						centrosome|nucleus|spindle				ovary(4)	4						GGCAACCAGTCCTGGTCCAACT	0.431													6	7					0	0	0.004672	0	0
EDEM3	80267	broad.mit.edu	37	1	184663419	184663419	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:184663419G>A	uc010pok.1	-	20	2838	c.2577C>T	c.(2575-2577)TCC>TCT	p.S859S	EDEM3_uc010pol.1_RNA|EDEM3_uc010pom.1_Silent_p.S875S	NM_025191	NP_079467	Q9BZQ6	EDEM3_HUMAN	ER degradation enhancer, mannosidase alpha-like	859					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			skin(1)	1						GTTCAGAAGGGGAAATGCTTG	0.373													8	4					0	0	0.004482	0	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200819197	200819197	+	Silent	SNP	C	T	T	rs141562761		TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:200819197C>T	uc001gvl.2	+	12	3603	c.3333C>T	c.(3331-3333)CCC>CCT	p.P1111P	CAMSAP1L1_uc001gvk.2_Silent_p.P1100P|CAMSAP1L1_uc001gvm.2_Silent_p.P1084P	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	1111						cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						CTCCTAAACCCGTTTTCCCAC	0.443													11	18					0	0	0.010729	0	0
CHI3L1	1116	broad.mit.edu	37	1	203149625	203149625	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:203149625C>T	uc001gzi.2	-	8	1038	c.867G>A	c.(865-867)AAG>AAA	p.K289K	FMOD_uc010pqi.1_Intron|CHI3L1_uc001gzk.1_Intron|CHI3L1_uc001gzj.2_Intron|CHI3L1_uc001gzl.3_5'Flank	NM_001276	NP_001267	P36222	CH3L1_HUMAN	chitinase 3-like 1 precursor	289					chitin catabolic process	extracellular space|proteinaceous extracellular matrix	cation binding|chitinase activity|extracellular matrix structural constituent|sugar binding			pancreas(1)	1						TCCCTGCCTCCTTGGTGAACC	0.597													20	32					0	0	0.012319	0	0
LRRN2	10446	broad.mit.edu	37	1	204588452	204588452	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:204588452C>T	uc001hbe.1	-	3	1057	c.669G>A	c.(667-669)ATG>ATA	p.M223I	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Missense_Mutation_p.M223I|LRRN2_uc009xbf.1_Missense_Mutation_p.M223I|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	223	LRR 7.|Extracellular (Potential).				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			CCCGCAGGTTCATGCCTGCTA	0.607													36	50					0	0	0.004289	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209946292	209946292	+	Splice_Site	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:209946292G>A	uc001hho.2	+	9	993	c.703_splice	c.e9-1	p.G235_splice	TRAF3IP3_uc001hhl.2_Splice_Site_p.G215_splice|TRAF3IP3_uc001hhm.1_Splice_Site_p.G235_splice|TRAF3IP3_uc001hhn.2_Splice_Site_p.G215_splice|TRAF3IP3_uc009xcr.2_Splice_Site_p.G235_splice	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator							integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		ATTTGCTCCAGGGACAGCTTA	0.438													15	10					0	0	0.008871	0	0
USH2A	7399	broad.mit.edu	37	1	215813981	215813981	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:215813981C>T	uc001hku.1	-	68	15274	c.14887G>A	c.(14887-14889)GAG>AAG	p.E4963K		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4963	Fibronectin type-III 35.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AACACGTACTCCTTCAGTTGG	0.547										HNSCC(13;0.011)			21	14					0	0	0.008871	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232650533	232650533	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:232650533C>T	uc001hvg.2	-	1	711	c.553G>A	c.(553-555)GGG>AGG	p.G185R		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	185					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				AGGGCAGCCCCGGTGTTGGGG	0.483													26	42					0	0	0.005443	0	0
NLRP3	114548	broad.mit.edu	37	1	247599429	247599429	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:247599429C>T	uc001icr.2	+	8	2794	c.2656C>T	c.(2656-2658)CTG>TTG	p.L886L	NLRP3_uc001ics.2_Intron|NLRP3_uc001icu.2_Silent_p.L886L|NLRP3_uc001icw.2_Silent_p.L829L|NLRP3_uc001icv.2_Intron|NLRP3_uc010pyw.1_Silent_p.L864L	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	886	LRR 6.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			ACAGTGTAACCTGCAGAAACT	0.453													17	17					0	0	0.008871	0	0
OR2T3	343173	broad.mit.edu	37	1	248637593	248637593	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:248637593G>A	uc001iel.1	+	1	942	c.942G>A	c.(940-942)ATG>ATA	p.M314I		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	314	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGTCAAGAATGAACCAAGAAA	0.488													26	74					0	0	0.005443	0	0
NEBL	10529	broad.mit.edu	37	10	21097441	21097441	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr10:21097441C>T	uc001iqi.2	-	26	3156	c.2759G>A	c.(2758-2760)GGA>GAA	p.G920E	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	920	Linker.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TTTGATACCTCCTTCATCAGA	0.393													7	8					0	0	0.006214	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999963	46999964	+	Missense_Mutation	DNP	TG	GT	GT			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr10:46999963_46999964TG>GT	uc001jec.2	+	3	1218_1219	c.1083_1084TG>GT	c.(1081-1086)CATGTG>CAGTTG	p.361_362HV>QL	GPRIN2_uc010qfq.1_Missense_Mutation_p.124_125HV>QL	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	361_362											0						CAGCCCTGCATGTGTTCCCAGA	0.673													17	102					0	0	0.004672	0	0
PPYR1	5540	broad.mit.edu	37	10	47087692	47087692	+	Silent	SNP	C	T	T	rs138885771	byFrequency	TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr10:47087692C>T	uc001jee.2	+	3	1328	c.909C>T	c.(907-909)ATC>ATT	p.I303I	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.I303I	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	303	Helical; Name=7; (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						GGAACCTCATCTTCTTAGTGT	0.552													15	66					0	0	0.002450	0	0
TMEM26	219623	broad.mit.edu	37	10	63170314	63170314	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr10:63170314C>T	uc001jlo.2	-	6	1242	c.873G>A	c.(871-873)GCG>GCA	p.A291A	TMEM26_uc010qij.1_RNA|TMEM26_uc001jlp.1_RNA	NM_178505	NP_848600	Q6ZUK4	TMM26_HUMAN	transmembrane protein 26	291	Helical; (Potential).					integral to membrane					0	Prostate(12;0.0112)					GGAAGTTCTTCGCGGCAAAGA	0.507													7	5					0	0	0.003080	0	0
ARID5B	84159	broad.mit.edu	37	10	63700073	63700073	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr10:63700073G>A	uc001jlt.1	+	3	434	c.408G>A	c.(406-408)AGG>AGA	p.R136R	ARID5B_uc010qil.1_Silent_p.R136R	NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	136					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					CCTTGGGAAGGAATGGACAGA	0.488													8	8					0	0	0.003080	0	0
MYPN	84665	broad.mit.edu	37	10	69882042	69882042	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr10:69882042G>A	uc001jnm.3	+	3	1032	c.847G>A	c.(847-849)GGA>AGA	p.G283R	MYPN_uc001jnl.1_Missense_Mutation_p.G283R|MYPN_uc001jnn.3_Intron|MYPN_uc001jno.3_Missense_Mutation_p.G283R|MYPN_uc001jnp.1_Missense_Mutation_p.G283R|MYPN_uc009xps.2_Missense_Mutation_p.G283R|MYPN_uc009xpt.2_Missense_Mutation_p.G283R|MYPN_uc010qit.1_5'UTR|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	283	Interaction with CARP.|Ig-like 1.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						AGTTCCAGAAGGAACTCGAGT	0.468													20	22					0	0	0.010504	0	0
USP54	159195	broad.mit.edu	37	10	75258464	75258465	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr10:75258464_75258465CC>TT	uc001juo.2	-	22	4994_4995	c.4977_4978GG>AA	c.(4975-4980)GAGGGG>GAAAGG	p.G1660R	PPP3CB_uc001juf.2_5'Flank|PPP3CB_uc001jue.2_5'Flank|PPP3CB_uc001jug.2_5'Flank|PPP3CB_uc001jui.2_5'Flank|PPP3CB_uc001juh.2_5'Flank|USP54_uc010qkk.1_Missense_Mutation_p.G795R|USP54_uc001juk.2_Missense_Mutation_p.G748R|USP54_uc001jul.2_Missense_Mutation_p.G701R|USP54_uc001jum.2_RNA|USP54_uc001jun.2_RNA	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	1660					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					AACAGAAACCCCTCTCCCACTG	0.52													23	41					0	0	0.004672	0	0
DLG5	9231	broad.mit.edu	37	10	79569428	79569428	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr10:79569428G>A	uc001jzk.2	-	24	4594	c.4524C>T	c.(4522-4524)TCC>TCT	p.S1508S	DLG5_uc001jzi.2_Silent_p.S263S|DLG5_uc001jzj.2_Silent_p.S923S|DLG5_uc009xru.1_RNA	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1508	PDZ 4.				cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity	p.S1508S(1)		ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			GCTCCAGCTGGGACTTTTTGA	0.547													63	127					0	0	0.014410	0	0
GRID1	2894	broad.mit.edu	37	10	87484330	87484330	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr10:87484330T>C	uc001kdl.1	-	11	1738	c.1637A>G	c.(1636-1638)AAG>AGG	p.K546R	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Missense_Mutation_p.K117R	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	546	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CTCGGGCTTCTTAATTAGAAT	0.527										Multiple Myeloma(13;0.14)			19	15					0	0	0.008871	0	0
C10orf4	118924	broad.mit.edu	37	10	95430549	95430549	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr10:95430549G>A	uc001kiz.1	-	13	1081	c.883C>T	c.(883-885)CCA>TCA	p.P295S	C10orf4_uc001kiv.1_RNA|C10orf4_uc001kja.1_Missense_Mutation_p.P295S	NM_145246	NP_660289	Q70Z53	F10C1_HUMAN	FRA10AC1 protein	295						nucleus	protein binding				0		Colorectal(252;0.122)				TCTGTCTCTGGTAGTGGACCC	0.323													3	3					0	0	0.004672	0	0
GOT1	2805	broad.mit.edu	37	10	101165984	101165984	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr10:101165984G>A	uc001kpr.2	-	4	655	c.447C>T	c.(445-447)TCC>TCT	p.S149S	GOT1_uc009xwh.2_RNA|GOT1_uc001kpq.1_5'UTR	NM_002079	NP_002070	P17174	AATC_HUMAN	aspartate aminotransferase 1	149					aspartate catabolic process|cellular response to insulin stimulus|gluconeogenesis|response to glucocorticoid stimulus	cytosol	L-aspartate:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding				0		Ovarian(717;0.028)|Colorectal(252;0.234)		Epithelial(162;4.76e-10)|all cancers(201;3.84e-08)	L-Aspartic Acid(DB00128)|L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	AACCAGCAGCGGAAAACACAG	0.463													29	31					0	0	0.013726	0	0
NRAP	4892	broad.mit.edu	37	10	115412762	115412762	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr10:115412762C>T	uc001laj.2	-	6	666	c.502G>A	c.(502-504)GGG>AGG	p.G168R	NRAP_uc001lak.2_Missense_Mutation_p.G168R|NRAP_uc001lal.3_Missense_Mutation_p.G168R	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	168						fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		GGAAAGCTCCCCTTGCCCCTG	0.473													20	27					0	0	0.012319	0	0
BTBD16	118663	broad.mit.edu	37	10	124043430	124043430	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr10:124043430G>A	uc001lgc.1	+	4	483	c.232G>A	c.(232-234)GGG>AGG	p.G78R	BTBD16_uc001lgd.1_Missense_Mutation_p.G77R	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	78										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				CATCCAAAGTGGGGAAGCAGG	0.398													6	16					0	0	0.001168	0	0
CUZD1	50624	broad.mit.edu	37	10	124596504	124596504	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr10:124596504G>A	uc001lgq.2	-	5	992	c.660C>T	c.(658-660)ACC>ACT	p.T220T	CUZD1_uc001lgp.2_5'UTR|CUZD1_uc009yad.2_5'UTR|CUZD1_uc009yaf.2_Intron|CUZD1_uc001lgr.2_5'UTR|CUZD1_uc010qty.1_Intron|CUZD1_uc009yae.2_Intron|CUZD1_uc001lgs.2_Silent_p.T220T|CUZD1_uc010qtz.1_Silent_p.T220T	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	220	Extracellular (Potential).|CUB 2.				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		GGCCAGAGTTGGTGGAGGGGC	0.458													6	7					0	0	0.001168	0	0
IFITM3	10410	broad.mit.edu	37	11	320606	320606	+	Missense_Mutation	SNP	G	T	T	rs149004156	by1000genomes	TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:320606G>T	uc001lpa.2	-	1	309	c.208C>A	c.(208-210)CCC>ACC	p.P70T	uc001loz.2_Intron	NM_021034	NP_066362	Q01628	IFM3_HUMAN	interferon-induced transmembrane protein 3	70	Interaction with SPP1.|Helical; (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane		p.P70T(1)		central_nervous_system(7)	7		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		AGGCAGCAGGGGTTCATGAAG	0.632													6	156					0.00307968	0.00330284	0.003080	1	0
KRTAP5-6	440023	broad.mit.edu	37	11	1718677	1718677	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:1718677G>A	uc001lua.2	+	1	253	c.202G>A	c.(202-204)GGG>AGG	p.G68R		NM_001012416	NP_001012416	Q6L8G9	KRA56_HUMAN	keratin associated protein 5-6	68	6 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GGGCTCCAAAGGGGGCTGTGG	0.642													88	101					0	0	0.014410	0	0
PGAP2	27315	broad.mit.edu	37	11	3832517	3832517	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:3832517C>T	uc001lys.2	+	2	154	c.28C>T	c.(28-30)CGG>TGG	p.R10W	PGAP2_uc001lyl.2_5'UTR|PGAP2_uc010qxw.1_Missense_Mutation_p.R67W|PGAP2_uc010qxx.1_Intron|PGAP2_uc001lyp.3_Silent_p.I21I|PGAP2_uc010qxy.1_Missense_Mutation_p.R67W|PGAP2_uc010qxz.1_Missense_Mutation_p.R67W|PGAP2_uc001lyn.3_Intron|PGAP2_uc010qya.1_RNA|PGAP2_uc001lyr.2_Missense_Mutation_p.R10W|PGAP2_uc010qyb.1_Intron|PGAP2_uc001lyt.2_Intron	NM_014489	NP_055304	Q9UHJ9	PGAP2_HUMAN	FGF receptor activating protein 1 isoform 1	10					GPI anchor biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	protein transporter activity				0						ACCACTGGATCGGGATGGGAC	0.607													29	27					0	0	0.010818	0	0
OR52M1	119772	broad.mit.edu	37	11	4567217	4567217	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:4567217G>A	uc010qyf.1	+	1	797	c.797G>A	c.(796-798)CGA>CAA	p.R266Q		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTGATTCACCGATTTGGTCAG	0.507													9	15					0	0	0.006214	0	0
SYT9	143425	broad.mit.edu	37	11	7334957	7334957	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:7334957C>T	uc001mfe.2	+	3	1066	c.829C>T	c.(829-831)CAC>TAC	p.H277Y	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_Intron	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	277	Cytoplasmic (Potential).|C2 1.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		GACTAAAGTTCACAGAAAGAC	0.433													17	38					0	0	0.004990	0	0
NLRP10	338322	broad.mit.edu	37	11	7984773	7984773	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:7984773G>A	uc001mfv.1	-	1	287	c.270C>T	c.(268-270)CTC>CTT	p.L90L		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	90	DAPIN.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AAATATGGCTGAGCTGGTCCA	0.527													15	24					0	0	0.004007	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16816459	16816459	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:16816459G>A	uc001mmo.2	-	18	2531	c.2516C>T	c.(2515-2517)CCG>CTG	p.P839L	PLEKHA7_uc010rcu.1_Missense_Mutation_p.P839L|PLEKHA7_uc010rcv.1_Missense_Mutation_p.P413L|PLEKHA7_uc001mmn.2_Missense_Mutation_p.P547L	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	839					epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						CATCTCACCCGGATTTTTTAC	0.512													41	40					0	0	0.009718	0	0
ACCSL	390110	broad.mit.edu	37	11	44072947	44072947	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:44072947C>T	uc001mxw.1	+	4	754	c.698C>T	c.(697-699)CCA>CTA	p.P233L	ACCSL_uc009ykr.2_Missense_Mutation_p.P52L	NM_001031854	NP_001027025	Q4AC99	1A1L2_HUMAN	1-aminocyclopropane-1-carboxylate synthase	233							1-aminocyclopropane-1-carboxylate synthase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			ovary(5)	5						CGACTTGACCCAGAAAATGTG	0.572													15	29					0	0	0.002450	0	0
CHST1	8534	broad.mit.edu	37	11	45671313	45671313	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:45671313G>A	uc001mys.1	-	4	1832	c.1161C>T	c.(1159-1161)ATC>ATT	p.I387I		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	387	Lumenal (Potential).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		CCGAGGCGGCGATCTTGTAGC	0.701													36	51					0	0	0.007835	0	0
OR5M3	219482	broad.mit.edu	37	11	56237408	56237408	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:56237408C>T	uc010rjk.1	-	1	566	c.566G>A	c.(565-567)GGG>GAG	p.G189E		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	189	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TACAAAGGTCCCAGCACAGGC	0.398													7	18					0	0	0.003080	0	0
OR1S1	219959	broad.mit.edu	37	11	57982301	57982301	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:57982301G>A	uc010rkc.1	+	1	85	c.85G>A	c.(85-87)GGA>AGA	p.G29R		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	29	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				CATTCTCCTGGGATTTTTCAA	0.418													14	28					0	0	0.002450	0	0
LGALS12	85329	broad.mit.edu	37	11	63283841	63283841	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:63283841C>T	uc001nxa.2	+	9	1328	c.987C>T	c.(985-987)GTC>GTT	p.V329V	LGALS12_uc001nxb.2_Silent_p.V320V|LGALS12_uc001nxc.2_Silent_p.V330V|LGALS12_uc001nxd.2_Silent_p.V268V|LGALS12_uc001nxe.2_Silent_p.V259V|LGALS12_uc009yot.2_Silent_p.V289V	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	329	Galectin 2.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						GTGGAAGTGTCCAGCTCTACT	0.622													22	20					0	0	0.002780	0	0
RASGRP2	10235	broad.mit.edu	37	11	64503020	64503020	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:64503020C>T	uc009ypu.2	-	11	1517	c.1290G>A	c.(1288-1290)ATG>ATA	p.M430I	RASGRP2_uc001oat.2_Missense_Mutation_p.M332I|RASGRP2_uc001oau.2_Missense_Mutation_p.M285I|RASGRP2_uc009ypv.2_Missense_Mutation_p.M430I|RASGRP2_uc009ypw.2_Missense_Mutation_p.M430I	NM_001098671	NP_001092141	Q7LDG7	GRP2_HUMAN	RAS guanyl releasing protein 2	430	EF-hand 1.				platelet activation|Ras protein signal transduction|regulation of cell growth|regulation of small GTPase mediated signal transduction	cell junction|cytosol|ruffle membrane|synapse|synaptosome	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity				0						TCACCTCCACCATCTTCTCGA	0.647													19	26					0	0	0.006122	0	0
PPP1CA	5499	broad.mit.edu	37	11	67166506	67166506	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:67166506C>T	uc001okw.1	-	5	775	c.652G>A	c.(652-654)GAG>AAG	p.E218K	PPP1CA_uc009yro.1_Missense_Mutation_p.E36K|PPP1CA_uc001okt.1_Missense_Mutation_p.E223K|PPP1CA_uc001oku.1_Missense_Mutation_p.E229K|PPP1CA_uc001okv.1_Missense_Mutation_p.E174K|PPP1CA_uc001okx.1_Missense_Mutation_p.E306K|PPP1CA_uc001oky.2_Missense_Mutation_p.E218K	NM_002708	NP_002699	P62136	PP1A_HUMAN	protein phosphatase 1, catalytic subunit, alpha	218					cell cycle|cell division|glycogen metabolic process|protein dephosphorylation|triglyceride catabolic process	cytosol|MLL5-L complex|nucleolus|PTW/PP1 phosphatase complex	metal ion binding|protein binding|protein phosphatase type 1 regulator activity|protein serine/threonine phosphatase activity			breast(1)|pancreas(1)	2			BRCA - Breast invasive adenocarcinoma(15;8.53e-07)			CGGTCGTTCTCGCCCCAGCCC	0.622													28	38					0	0	0.008361	0	0
UVRAG	7405	broad.mit.edu	37	11	75852265	75852265	+	Silent	SNP	C	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:75852265C>A	uc001oxc.2	+	15	2149	c.1908C>A	c.(1906-1908)ATC>ATA	p.I636I	UVRAG_uc010rrw.1_Silent_p.I535I|UVRAG_uc001oxd.2_Silent_p.I264I|UVRAG_uc010rrx.1_Silent_p.I264I|UVRAG_uc010rry.1_Silent_p.I192I	NM_003369	NP_003360	Q9P2Y5	UVRAG_HUMAN	UV radiation resistance associated	636					DNA repair|positive regulation of autophagy	early endosome|late endosome|lysosome	protein binding			skin(4)|lung(2)	6						AAGAAATCATCGGGCTGGAAG	0.562													4	35					0.00909568	0.00970789	0.009096	1	0
YAP1	10413	broad.mit.edu	37	11	102056830	102056830	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:102056830C>T	uc001pgt.2	+	4	1140	c.770C>T	c.(769-771)TCT>TTT	p.S257F	YAP1_uc001pgs.2_Intron|YAP1_uc001pgu.2_Missense_Mutation_p.S257F|YAP1_uc001pgv.2_Intron|YAP1_uc010ruo.1_Missense_Mutation_p.S79F|YAP1_uc001pgw.2_Missense_Mutation_p.S79F|YAP1_uc010rup.1_Missense_Mutation_p.S18F	NM_001130145	NP_001123617	P46937	YAP1_HUMAN	Yes-associated protein 1, 65kDa isoform 1	257	WW 2.				cell proliferation|cellular response to gamma radiation|contact inhibition|hippo signaling cascade|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription coactivator activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(1)|lung(1)|central_nervous_system(1)	3	all_cancers(8;0.000575)|all_epithelial(12;0.00564)	Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.00936)	Lung(13;0.245)	BRCA - Breast invasive adenocarcinoma(274;0.0189)		AAGACCACCTCTTGGCTAGAC	0.373													18	11					0	0	0.008871	0	0
DRD2	1813	broad.mit.edu	37	11	113286265	113286265	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:113286265G>A	uc001pnz.2	-	4	922	c.601C>T	c.(601-603)CCC>TCC	p.P201S	DRD2_uc010rwv.1_Missense_Mutation_p.P200S|DRD2_uc001poa.3_Missense_Mutation_p.P201S|DRD2_uc001pob.3_Missense_Mutation_p.P201S|DRD2_uc009yyr.1_Missense_Mutation_p.P201S	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	201	Helical; Name=5; (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	ACAATGAAGGGCACGTAGAAG	0.597													34	31					0	0	0.012213	0	0
UBE4A	9354	broad.mit.edu	37	11	118239494	118239494	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:118239494G>A	uc001psw.2	+	3	399	c.270G>A	c.(268-270)AGG>AGA	p.R90R	UBE4A_uc001psv.2_Silent_p.R90R	NM_004788	NP_004779	Q14139	UBE4A_HUMAN	ubiquitination factor E4A	90					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	5	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		TGATCCAAAGGATCTTCCTTA	0.433													29	54					0	0	0.005443	0	0
KCNJ5	3762	broad.mit.edu	37	11	128781885	128781885	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:128781885C>T	uc001qet.2	+	2	1031	c.717C>T	c.(715-717)ATC>ATT	p.I239I	KCNJ5_uc009zck.2_Silent_p.I239I|KCNJ5_uc001qew.2_Silent_p.I239I	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	239	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	CCAAGCTCATCAAGTCCCGGC	0.612													44	62					0	0	0.014410	0	0
KCNJ5	3762	broad.mit.edu	37	11	128781893	128781893	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr11:128781893G>A	uc001qet.2	+	2	1039	c.725G>A	c.(724-726)CGG>CAG	p.R242Q	KCNJ5_uc009zck.2_Missense_Mutation_p.R242Q|KCNJ5_uc001qew.2_Missense_Mutation_p.R242Q	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	242	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	ATCAAGTCCCGGCAGACCAAA	0.612													42	66					0	0	0.011902	0	0
IQSEC3	440073	broad.mit.edu	37	12	247568	247568	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:247568C>T	uc001qhw.1	+	1	136	c.130C>T	c.(130-132)CTG>TTG	p.L44L	IQSEC3_uc001qhu.1_Silent_p.L44L|IQSEC3_uc001qht.1_Silent_p.L129L|uc001qhv.1_RNA	NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	347					regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		GGAGAGCCGCCTGCCACGGCG	0.667													13	9					0	0	0.001855	0	0
KCNA6	3742	broad.mit.edu	37	12	4919931	4919931	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:4919931G>A	uc001qng.2	+	1	1590	c.724G>A	c.(724-726)GAA>AAA	p.E242K		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	242						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						CACCCCTGGGGAAATGGGGAC	0.557										HNSCC(72;0.22)			53	75					0	0	0.014410	0	0
KCNA5	3741	broad.mit.edu	37	12	5154998	5154998	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:5154998C>T	uc001qni.2	+	1	1914	c.1685C>T	c.(1684-1686)TCC>TTC	p.S562F		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	562						Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						AGCAGGGGATCCTTCTGCAAG	0.642													16	29					0	0	0.007413	0	0
PZP	5858	broad.mit.edu	37	12	9346693	9346693	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:9346693C>T	uc001qvl.2	-	11	1263	c.1234G>A	c.(1234-1236)GTT>ATT	p.V412I	PZP_uc009zgl.2_Missense_Mutation_p.V281I	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						AGTTTATTAACCGAGATACTG	0.378													11	29					0	0	0.002450	0	0
TAS2R31	259290	broad.mit.edu	37	12	11183232	11183232	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:11183232G>C	uc001qzo.1	-	1	775	c.703C>G	c.(703-705)CTC>GTC	p.L235V	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176885	NP_795366	P59538	T2R31_HUMAN	taste receptor, type 2, member 31	235	Helical; Name=6; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity				0						CATAACAAGAGGAAAAAGATC	0.403													7	119					0	0	0.003080	0	0
PRB2	653247	broad.mit.edu	37	12	11546911	11546911	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:11546911C>T	uc010shk.1	-	3	136	c.101G>A	c.(100-102)GGA>GAA	p.G34E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTGGATTTCCTGGAGAACA	0.483													29	43					0	0	0.010818	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20890120	20890120	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:20890120G>A	uc001rej.3	+	12	1817	c.1462G>A	c.(1462-1464)GAA>AAA	p.E488K	SLCO1C1_uc010sii.1_Missense_Mutation_p.E488K|SLCO1C1_uc010sij.1_Missense_Mutation_p.E439K|SLCO1C1_uc009zip.2_Missense_Mutation_p.E322K|SLCO1C1_uc001rei.2_Missense_Mutation_p.E488K|SLCO1C1_uc010sik.1_Missense_Mutation_p.E370K	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	488	Extracellular (Potential).|Kazal-like.				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					GACAAAATGGGAACCCATGTG	0.378													6	11					0	0	0.001168	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21196326	21196326	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:21196326C>T	uc010sin.1	+	6	645	c.645C>T	c.(643-645)TTC>TTT	p.F215F	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Silent_p.F262F	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	215						membrane	transporter activity				0						GGCTTGGTTTCCTTGTGTCTG	0.353													5	11					0	0	0.000602	0	0
KRT75	9119	broad.mit.edu	37	12	52818522	52818522	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:52818522G>A	uc001saj.2	-	9	1457	c.1435C>T	c.(1435-1437)CTT>TTT	p.L479F		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	479	Tail.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		CCACTGGAAAGAGTAGAGGTG	0.612													39	36					0	0	0.014410	0	0
SLC39A5	283375	broad.mit.edu	37	12	56625174	56625174	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:56625174A>C	uc010sqj.1	+	4	373	c.116A>C	c.(115-117)TAC>TCC	p.Y39S	SLC39A5_uc010sqi.1_Intron|SLC39A5_uc010sqk.1_Missense_Mutation_p.Y39S	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	39	Extracellular (By similarity).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						CAGAACCATTACCTGGCCCAG	0.652													63	81					0	0	0.014410	0	0
SYT1	6857	broad.mit.edu	37	12	79837936	79837936	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:79837936C>T	uc001sys.2	+	11	1683	c.1012C>T	c.(1012-1014)CCC>TCC	p.P338S	SYT1_uc001syt.2_Missense_Mutation_p.P338S|SYT1_uc001syu.2_Missense_Mutation_p.P335S|SYT1_uc001syv.2_Missense_Mutation_p.P338S	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	338	Cytoplasmic (Potential).|Phospholipid binding (Probable).|C2 2.				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						CACACTTAACCCCTACTACAA	0.358													18	21					0	0	0.006122	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85450857	85450857	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:85450857G>A	uc001tac.2	+	8	2397	c.2286G>A	c.(2284-2286)AAG>AAA	p.K762K	LRRIQ1_uc001tab.1_Silent_p.K762K|LRRIQ1_uc001taa.1_Silent_p.K737K	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	762										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		ATCAACAAAAGAAAATTGTTA	0.378													20	22					0	0	0.008871	0	0
C12orf50	160419	broad.mit.edu	37	12	88379815	88379815	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:88379815C>T	uc001tam.1	-	11	1106	c.938G>A	c.(937-939)AGA>AAA	p.R313K	C12orf50_uc001tan.2_Missense_Mutation_p.R328K	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	313										skin(2)|ovary(1)	3						ATTTTGGGGTCTTGGGGCCTG	0.423													11	11					0	0	0.010729	0	0
STAB2	55576	broad.mit.edu	37	12	104063322	104063322	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:104063322C>T	uc001tjw.2	+	21	2362	c.2176C>T	c.(2176-2178)CCA>TCA	p.P726S		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	726	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TTTTCAGATTCCAAAGTGCTG	0.438													44	52					0	0	0.010771	0	0
BTBD11	121551	broad.mit.edu	37	12	108011078	108011078	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:108011078G>A	uc001tmk.1	+	9	2617	c.2096G>A	c.(2095-2097)GGA>GAA	p.G699E	BTBD11_uc009zut.1_Intron|BTBD11_uc001tmj.2_Missense_Mutation_p.G699E|BTBD11_uc001tml.1_Missense_Mutation_p.G236E	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	699	ANK 3.					integral to membrane	DNA binding			skin(2)|ovary(1)	3						GGGCTTGCAGGAAATTTTGAG	0.502													39	58					0	0	0.011902	0	0
PWP1	11137	broad.mit.edu	37	12	108102893	108102893	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:108102893G>A	uc001tmo.1	+	13	1261	c.1174G>A	c.(1174-1176)GAT>AAT	p.D392N	PWP1_uc009zuu.1_Missense_Mutation_p.D392N	NM_007062	NP_008993	Q13610	PWP1_HUMAN	periodic tryptophan protein 1	392	WD 4.				transcription, DNA-dependent	nucleus					0						TTTAGGTCTTGATCTTAGCAG	0.388													12	14					0	0	0.010729	0	0
OASL	8638	broad.mit.edu	37	12	121469308	121469308	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:121469308G>A	uc001tzj.1	-	3	600	c.594C>T	c.(592-594)TTC>TTT	p.F198F	OASL_uc001tzk.1_Silent_p.F198F	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	198					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GATGTTTCACGAAATTTCTCT	0.587													148	185					0	0	0.014410	0	0
OASL	8638	broad.mit.edu	37	12	121471375	121471375	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr12:121471375C>T	uc001tzj.1	-	2	376	c.370G>A	c.(370-372)GAG>AAG	p.E124K	OASL_uc001tzk.1_Missense_Mutation_p.E124K	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	124					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CTCAGGTCCTCGAGCCCGAGG	0.577													201	254					0	0	0.014410	0	0
BRCA2	675	broad.mit.edu	37	13	32914692	32914692	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr13:32914692C>T	uc001uub.1	+	11	6427	c.6200C>T	c.(6199-6201)TCC>TTC	p.S2067F		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	2067	BRCA2 8.				cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		AAGCAAGTTTCCATTTTAGAA	0.353			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			12	22					0	0	0.013537	0	0
NBEA	26960	broad.mit.edu	37	13	36229125	36229125	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr13:36229125C>T	uc001uvb.2	+	53	8312	c.8106C>T	c.(8104-8106)TTC>TTT	p.F2702F	NBEA_uc010abi.2_Silent_p.F1358F|NBEA_uc010tef.1_Silent_p.F495F|NBEA_uc001uvd.2_Silent_p.F280F	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2702						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		ATAAGAGCTTCAGAGTTTATT	0.343													9	8					0	0	0.004482	0	0
RCBTB1	55213	broad.mit.edu	37	13	50140769	50140769	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr13:50140769G>A	uc001vde.1	-	4	523	c.262C>T	c.(262-264)CTT>TTT	p.L88F		NM_018191	NP_060661	Q8NDN9	RCBT1_HUMAN	regulator of chromosome condensation (RCC1) and	88	RCC1 1.				cell cycle|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(1)	1		Lung NSC(96;2.1e-05)|Breast(56;0.00015)|Prostate(109;0.00314)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;4.7e-09)		GTGCTGAGAAGAACATGTGGT	0.433													30	46					0	0	0.009535	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454314	84454314	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr13:84454314G>A	uc001vlk.2	-	1	2215	c.1329C>T	c.(1327-1329)TTC>TTT	p.F443F		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	443	LRR 9.|Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GCAGCCCCGCGAATTTCTCCC	0.507													29	33					0	0	0.005443	0	0
SLC10A2	6555	broad.mit.edu	37	13	103698526	103698526	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr13:103698526G>A	uc001vpy.3	-	6	1601	c.1004C>T	c.(1003-1005)TCG>TTG	p.S335L		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	335	Cytoplasmic (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CTTATAAAACGATGACTCTGG	0.373													6	7					0	0	0.001984	0	0
COL4A2	1284	broad.mit.edu	37	13	111156271	111156271	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr13:111156271C>T	uc001vqx.2	+	44	4505	c.4216C>T	c.(4216-4218)CCC>TCC	p.P1406S		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1406	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			GACAGTGGGTCCCCAGGGGAG	0.711													34	44					0	0	0.012213	0	0
OR11G2	390439	broad.mit.edu	37	14	20666514	20666514	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr14:20666514G>A	uc010tlb.1	+	1	1020	c.1020G>A	c.(1018-1020)AAG>AAA	p.K340K		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	340	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		AAGCTCTGAAGAAATTTTGGG	0.184													37	51					0	0	0.008740	0	0
LRRC16B	90668	broad.mit.edu	37	14	24534842	24534842	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr14:24534842G>A	uc001wlj.2	+	34	3565	c.3408G>A	c.(3406-3408)GGG>GGA	p.G1136G	LRRC16B_uc001wlk.2_Intron	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	1136										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		GCACTGAGGGGTCAGAGCCAG	0.617													43	68					0	0	0.014410	0	0
AKAP6	9472	broad.mit.edu	37	14	32902941	32902941	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr14:32902941C>T	uc001wrq.2	+	2	412	c.242C>T	c.(241-243)TCA>TTA	p.S81L	AKAP6_uc010aml.2_Missense_Mutation_p.S78L	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	81					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		CGGATGACCTCAGAGAGGGTC	0.507													6	11					0	0	0.001168	0	0
NIN	51199	broad.mit.edu	37	14	51196294	51196294	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr14:51196294G>A	uc001wym.2	-	29	6216	c.6025C>T	c.(6025-6027)CAG>TAG	p.Q2009*	NIN_uc001wyi.2_Nonsense_Mutation_p.Q2009*|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Nonsense_Mutation_p.Q1296*|NIN_uc010tqp.1_Nonsense_Mutation_p.Q2015*|NIN_uc001wyo.2_Nonsense_Mutation_p.Q2009*|NIN_uc001wyn.2_RNA	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	2009	Potential.				centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					TGCAGGTGCTGGTTTATCCTT	0.517			T	PDGFRB	MPD								12	21					0	0	0.002450	0	0
ADAM21	8747	broad.mit.edu	37	14	70924572	70924572	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr14:70924572C>T	uc001xmd.2	+	1	356	c.356C>T	c.(355-357)CCT>CTT	p.P119L		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	119					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		GAGGCAGCCCCTGAGTCTCTG	0.498													8	61					0	0	0.008291	0	0
COQ6	51004	broad.mit.edu	37	14	74428237	74428237	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr14:74428237C>G	uc001xph.2	+	10	1254	c.1174C>G	c.(1174-1176)CAC>GAC	p.H392D	ENTPD5_uc001xpi.2_Intron|COQ6_uc001xpe.2_Missense_Mutation_p.H317D|COQ6_uc001xpf.2_Missense_Mutation_p.H317D|COQ6_uc010tuk.1_Missense_Mutation_p.H367D|COQ6_uc001xpg.2_Missense_Mutation_p.H392D	NM_182476	NP_872282	Q9Y2Z9	COQ6_HUMAN	coenzyme Q6 homolog isoform a	392					ubiquinone biosynthetic process	mitochondrion	flavin adenine dinucleotide binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen				0				BRCA - Breast invasive adenocarcinoma(234;0.00337)		CTTGGCCCATCACCTCAGTAC	0.507													10	22					0	0	0.010729	0	0
GALC	2581	broad.mit.edu	37	14	88454820	88454820	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr14:88454820C>A	uc001xvt.2	-	2	642	c.243G>T	c.(241-243)CAG>CAT	p.Q81H	GALC_uc010tvx.1_Missense_Mutation_p.Q55H|GALC_uc010tvy.1_Intron|GALC_uc010tvz.1_Missense_Mutation_p.Q25H|GALC_uc001xvu.1_Missense_Mutation_p.Q81H	NM_000153	NP_000144	P54803	GALC_HUMAN	galactosylceramidase isoform a precursor	81					carbohydrate metabolic process|galactosylceramide catabolic process	lysosome	cation binding|galactosylceramidase activity				0						AATCCAATATCTGAGAACGAT	0.303													30	47					1.56738e-10	1.68911e-10	0.004289	1	0
SERPINA10	51156	broad.mit.edu	37	14	94756511	94756511	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr14:94756511G>A	uc001yct.2	-	2	886	c.420C>T	c.(418-420)CTC>CTT	p.L140L	SERPINA10_uc001ycu.3_Silent_p.L140L	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	140					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		GGGAAGGCAGGAGCCCGGGCT	0.592													16	25					0	0	0.003163	0	0
SERPINA11	256394	broad.mit.edu	37	14	94909486	94909486	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr14:94909486G>A	uc001ydd.1	-	4	1054	c.994C>T	c.(994-996)CTC>TTC	p.L332F		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	332					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		ATGTTGGTGAGACCAATTTGG	0.438													24	19					0	0	0.014323	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103432657	103432657	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr14:103432657C>G	uc001ymi.1	-	18	2771	c.2539G>C	c.(2539-2541)GAG>CAG	p.E847Q	CDC42BPB_uc001ymj.1_5'Flank	NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	847					actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		CTCAAAGCCTCGAGCTCTTCG	0.453													28	37					0	0	0.006320	0	0
ADAM6	8755	broad.mit.edu	37	14	106622269	106622269	+	RNA	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr14:106622269C>T	uc010tyt.1	-	1111		c.25424G>A								Parts of antibodies, mostly variable regions.												0						CATGTCCACTCACTCAATATC	0.448													24	21					0	0	0.002780	0	0
ADAM6	8755	broad.mit.edu	37	14	106899287	106899287	+	RNA	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr14:106899287C>T	uc010tyt.1	-	266		c.10869G>A			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						GTCTCAGGGACCCCCCAGGCT	0.597													13	5					0	0	0.003163	0	0
ADAM6	8755	broad.mit.edu	37	14	106926361	106926361	+	RNA	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr14:106926361C>T	uc010tyt.1	-	235		c.10194G>A			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						AGACCCTTCCCCGGAGCTTGA	0.547													39	55					0	0	0.005524	0	0
Unknown	0	broad.mit.edu	37	15	20496610	20496610	+	RNA	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr15:20496610G>A	uc001ytf.1	+	6		c.663G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		TCTACTAGTCGAAAGTGGCCT	0.438													9	75					0	0	0.006214	0	0
LOC646214	646214	broad.mit.edu	37	15	21937133	21937133	+	RNA	SNP	C	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr15:21937133C>A	uc010tzj.1	-	1		c.3607G>T				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						TTTCTGTTACCACATCAGTGA	0.433													5	43					1.23904e-05	1.33204e-05	0.000602	1	0
NIPA1	123606	broad.mit.edu	37	15	23049282	23049282	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr15:23049282G>A	uc001yvc.2	-	5	562	c.537C>T	c.(535-537)ATC>ATT	p.I179I	NIPA1_uc001yvd.2_Silent_p.I9I|NIPA1_uc001yve.2_Silent_p.I104I	NM_144599	NP_653200	Q7RTP0	NIPA1_HUMAN	non-imprinted in Prader-Willi/Angelman syndrome	179	Helical; (Potential).				cell death	early endosome|integral to membrane|plasma membrane					0		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;4.18e-06)|Epithelial(43;3.97e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00165)		GGGCCGGCGCGATCCAGAAGA	0.607													6	9					0	0	0.001168	0	0
RASGRP1	10125	broad.mit.edu	37	15	38794597	38794597	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr15:38794597T>C	uc001zke.3	-	12	1632	c.1454A>G	c.(1453-1455)GAC>GGC	p.D485G	RASGRP1_uc010bbe.2_RNA|RASGRP1_uc010bbf.2_Missense_Mutation_p.D312G|RASGRP1_uc010bbg.2_Missense_Mutation_p.D312G|RASGRP1_uc001zkd.3_Missense_Mutation_p.D450G	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	485	1 (Potential).|EF-hand 1.				cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding			large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		TCCATCCTGGTCGTGATCATA	0.393													2	5					0	0	0.004672	0	0
HDC	3067	broad.mit.edu	37	15	50534909	50534909	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr15:50534909C>T	uc001zxz.2	-	12	1643	c.1537G>A	c.(1537-1539)GGA>AGA	p.G513R	HDC_uc001zxy.2_Missense_Mutation_p.G256R|HDC_uc010uff.1_Missense_Mutation_p.G480R	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	513					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	GGATCATCTCCTGCCCCACTG	0.582													12	21					0	0	0.001855	0	0
GCNT3	9245	broad.mit.edu	37	15	59910454	59910454	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr15:59910454G>A	uc002age.2	+	3	466	c.17G>A	c.(16-18)AGA>AAA	p.R6K	GCNT3_uc002agd.2_Missense_Mutation_p.R6K	NM_004751	NP_004742	O95395	GCNT3_HUMAN	glucosaminyl (N-acetyl) transferase 3, mucin	6	Cytoplasmic (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|membrane fraction	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)	2						CAATGGAAGAGACTCTGCCAG	0.522													21	30					0	0	0.002780	0	0
STRA6	64220	broad.mit.edu	37	15	74486141	74486141	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr15:74486141C>T	uc002axk.2	-	8	902	c.720G>A	c.(718-720)AAG>AAA	p.K240K	STRA6_uc002axi.2_Silent_p.K49K|STRA6_uc010ulh.1_Silent_p.K278K|STRA6_uc002axj.2_Silent_p.K279K|STRA6_uc010bji.2_Silent_p.K240K|STRA6_uc002axl.2_Silent_p.K172K|STRA6_uc002axm.2_Silent_p.K240K|STRA6_uc002axn.2_Silent_p.K231K|STRA6_uc010uli.1_Silent_p.K277K|STRA6_uc010bjj.1_RNA	NM_022369	NP_071764	Q9BX79	STRA6_HUMAN	stimulated by retinoic acid gene 6 homolog	240	Cytoplasmic (Potential).				adrenal gland development|alveolar primary septum development|developmental growth|diaphragm development|digestive tract morphogenesis|ear development|embryonic camera-type eye formation|embryonic digestive tract development|eyelid development in camera-type eye|face morphogenesis|feeding behavior|female genitalia development|kidney development|lung vasculature development|neuromuscular process|nose morphogenesis|paramesonephric duct development|positive regulation of behavior|pulmonary artery morphogenesis|pulmonary valve morphogenesis|smooth muscle tissue development|transport|uterus morphogenesis|ventricular septum development|vocal learning	integral to membrane|plasma membrane|protein complex	receptor activity			central_nervous_system(1)	1						GCCCCTTTACCTTGGAGCCTG	0.567													63	59					0	0	0.014410	0	0
CYP1A2	1544	broad.mit.edu	37	15	75047399	75047399	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr15:75047399C>T	uc002ayr.1	+	7	1585	c.1521C>T	c.(1519-1521)GTC>GTT	p.V507V		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	507					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	GTGAACATGTCCAGGCGCGGC	0.622													26	29					0	0	0.007291	0	0
AKAP13	11214	broad.mit.edu	37	15	86265545	86265545	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr15:86265545G>A	uc002blv.1	+	25	6633	c.6463G>A	c.(6463-6465)GTT>ATT	p.V2155I	AKAP13_uc002blu.1_Missense_Mutation_p.V2159I|AKAP13_uc010bnf.1_Missense_Mutation_p.V776I|AKAP13_uc002blw.1_Missense_Mutation_p.V620I|AKAP13_uc002blx.1_Missense_Mutation_p.V400I	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	2155	Interaction with ESR1.|DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						CAAGTACCCAGTTTTATTCCA	0.433													29	43					0	0	0.008361	0	0
Unknown	0	broad.mit.edu	37	16	66940	66940	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:66940G>A	uc002cfg.1	-	5	1355	c.696C>T	c.(694-696)AGC>AGT	p.S232S		NM_182905	NP_878908			WAS protein family homolog 1																		GCTCTCTCTTGCTGATGGACA	0.597													5	34					0	0	0.003080	0	0
ITFG3	83986	broad.mit.edu	37	16	314898	314898	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:314898C>T	uc002cgf.2	+	13	1731	c.1536C>T	c.(1534-1536)ATC>ATT	p.I512I	ITFG3_uc002cgg.2_Silent_p.I512I|ITFG3_uc010uud.1_Intron|ITFG3_uc002cgh.2_Silent_p.I512I	NM_032039	NP_114428	Q9H0X4	ITFG3_HUMAN	integrin alpha FG-GAP repeat containing 3	512	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1		all_cancers(16;0.000129)|all_epithelial(16;0.000206)|Hepatocellular(16;0.00264)|Lung NSC(18;0.0626)|all_lung(18;0.13)				TCTCTGTGATCAAGCACAAGG	0.662													32	32					0	0	0.009535	0	0
FLYWCH1	84256	broad.mit.edu	37	16	2983757	2983757	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:2983757C>T	uc002csd.2	+	6	1653	c.1290C>T	c.(1288-1290)TTC>TTT	p.F430F	FLYWCH1_uc002csb.2_Silent_p.F429F|FLYWCH1_uc002csc.2_Silent_p.F429F|FLYWCH1_uc010bsv.2_Silent_p.F105F	NM_032296	NP_115672	Q4VC44	FWCH1_HUMAN	FLYWCH-type zinc finger 1 isoform a	430	FLYWCH-type 3.					nucleus	DNA binding|metal ion binding				0						GGGGCAGCTTCCTGGTGTACG	0.682													9	11					0	0	0.008291	0	0
NOMO2	283820	broad.mit.edu	37	16	18532111	18532111	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:18532111G>A	uc002dfe.2	-	19	2321	c.2249C>T	c.(2248-2250)TCG>TTG	p.S750L	NOMO2_uc002dff.2_Missense_Mutation_p.S750L|NOMO2_uc010bvx.2_Missense_Mutation_p.S583L	NM_001004060	NP_001004060	Q5JPE7	NOMO2_HUMAN	nodal modulator 2 isoform 1	750	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			skin(1)	1						GAAATCATACGAGAAGGGGCC	0.507													27	101					0	0	0.014410	0	0
TMC5	79838	broad.mit.edu	37	16	19481053	19481053	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:19481053G>A	uc002dgc.3	+	10	2437	c.1688G>A	c.(1687-1689)GGA>GAA	p.G563E	TMC5_uc010vaq.1_Missense_Mutation_p.G563E|TMC5_uc002dgb.3_Missense_Mutation_p.G563E|TMC5_uc010var.1_Missense_Mutation_p.G563E|TMC5_uc002dgd.1_Missense_Mutation_p.G317E|TMC5_uc002dge.3_Missense_Mutation_p.G317E|TMC5_uc002dgf.3_Missense_Mutation_p.G246E|TMC5_uc002dgg.3_Missense_Mutation_p.G204E	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	563	Cytoplasmic (Potential).					integral to membrane				skin(1)	1						ATTTACTCCGGAGGGATCACC	0.448													27	36					0	0	0.005443	0	0
ACSM5	54988	broad.mit.edu	37	16	20430564	20430564	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:20430564C>T	uc002dhe.2	+	4	577	c.430C>T	c.(430-432)CCG>TCG	p.P144S	ACSM5_uc002dhd.1_Missense_Mutation_p.P144S	NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	144					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						TGTGATGATTCCGGGTGTGAC	0.557													13	23					0	0	0.001855	0	0
SPN	6693	broad.mit.edu	37	16	29675424	29675424	+	Silent	SNP	A	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:29675424A>G	uc002dtm.2	+	2	511	c.375A>G	c.(373-375)CTA>CTG	p.L125L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SPN_uc002dtn.2_Silent_p.L125L|SPN_uc010bzd.2_RNA	NM_001030288	NP_001025459	P16150	LEUK_HUMAN	sialophorin precursor	125	Extracellular (Potential).				blood coagulation|cellular defense response|chemotaxis|defense response to bacterium|establishment or maintenance of cell polarity|immune response|leukocyte migration|negative regulation of cell adhesion|positive regulation of tumor necrosis factor biosynthetic process	extracellular space|integral to plasma membrane	bacterial cell surface binding|transmembrane receptor activity			central_nervous_system(2)	2						CAAACTCTCTAGGATCCCACA	0.527													47	50					0	0	0.014410	0	0
ITGAX	3687	broad.mit.edu	37	16	31382410	31382410	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:31382410C>T	uc002ebu.1	+	15	1783	c.1716C>T	c.(1714-1716)ATC>ATT	p.I572I	ITGAX_uc002ebt.2_Silent_p.I572I|ITGAX_uc010vfk.1_Silent_p.I222I	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	572	FG-GAP 7.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GCCAGCGGATCGCGGGCTCCC	0.567													56	78					0	0	0.014410	0	0
UBE2MP1	606551	broad.mit.edu	37	16	34404506	34404506	+	RNA	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:34404506C>T	uc002edv.1	-	1		c.257G>A				NR_002837				full-length cDNA clone CS0DH003YB23 of T cells (Jurkat cell line) of Homo sapiens (human).												0						CGTTTATGTCCTTCTGGATCC	0.567													18	32					0	0	0.008871	0	0
ABCC11	85320	broad.mit.edu	37	16	48231955	48231955	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:48231955C>T	uc002eff.1	-	16	2591	c.2241G>A	c.(2239-2241)AAG>AAA	p.K747K	ABCC11_uc002efg.1_Silent_p.K747K|ABCC11_uc002efh.1_Silent_p.K747K|ABCC11_uc010vgk.1_Intron	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	747	Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				TCTCTGCTATCTTTGCTGTGT	0.557									Cerumen_Type				25	42					0	0	0.004656	0	0
ABCC11	85320	broad.mit.edu	37	16	48261785	48261785	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:48261785C>T	uc002eff.1	-	3	677	c.327G>A	c.(325-327)CGG>CGA	p.R109R	ABCC11_uc002efg.1_Silent_p.R109R|ABCC11_uc002efh.1_Silent_p.R109R|ABCC11_uc010vgl.1_Silent_p.R109R	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	109	Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				CTAAGCGACTCCGTAAGCTTT	0.552									Cerumen_Type				21	41					0	0	0.012319	0	0
HERPUD1	9709	broad.mit.edu	37	16	56977182	56977182	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:56977182C>T	uc002eke.1	+	8	1565	c.1156C>T	c.(1156-1158)CCC>TCC	p.P386S	HERPUD1_uc002ekf.1_Missense_Mutation_p.P385S|HERPUD1_uc002ekg.1_Missense_Mutation_p.P361S|HERPUD1_uc010cco.1_3'UTR|HERPUD1_uc010ccp.1_Missense_Mutation_p.P288S|HERPUD1_uc002ekh.1_Missense_Mutation_p.P204S	NM_014685	NP_055500	Q15011	HERP1_HUMAN	homocysteine-inducible, endoplasmic reticulum	386	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	protein binding				0						TCCAGAAGGCCCCCCAGCCAT	0.527			T	ERG	prostate								53	98					0	0	0.014410	0	0
NLRC5	84166	broad.mit.edu	37	16	57116378	57116378	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:57116378C>T	uc002ekk.1	+	49	5764	c.5539C>T	c.(5539-5541)CAG>TAG	p.Q1847*	NLRC5_uc010ccr.1_RNA|NLRC5_uc010ccs.1_RNA|NLRC5_uc002eko.1_RNA|NLRC5_uc002ekq.1_Nonsense_Mutation_p.Q389*|NLRC5_uc002ekr.1_Nonsense_Mutation_p.Q734*	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	1847					defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				CCTGAAGAGCCAGGAGCCCAG	0.567													20	54					0	0	0.002780	0	0
CLEC18A	348174	broad.mit.edu	37	16	69988295	69988295	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:69988295C>T	uc010vlo.1	+	4	395	c.275C>T	c.(274-276)CCA>CTA	p.P92L	CLEC18C_uc002exy.2_Missense_Mutation_p.P92L|CLEC18A_uc002exz.2_Missense_Mutation_p.P92L|CLEC18A_uc002eya.2_Missense_Mutation_p.P92L|CLEC18A_uc010vlp.1_Missense_Mutation_p.P92L	NM_001136214	NP_001129686	A5D8T8	CL18A_HUMAN	secretory protein LOC348174 precursor	92	SCP.					extracellular region	sugar binding				0						TGTGGAACCCCAACCCCGAGC	0.647													7	50					0	0	0.002450	0	0
HYDIN	54768	broad.mit.edu	37	16	70926411	70926412	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:70926411_70926412CC>TT	uc002ezr.2	-	56	9394_9395	c.9266_9267GG>AA	c.(9265-9267)GGG>GAA	p.G3089E		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3090										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GTGTTGAAATCCCTACAGAGTC	0.436													13	19					0	0	0.004672	0	0
KARS	3735	broad.mit.edu	37	16	75665648	75665648	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:75665648A>G	uc002feq.2	-	8	1069	c.1021T>C	c.(1021-1023)TAC>CAC	p.Y341H	KARS_uc002fer.2_Missense_Mutation_p.Y369H|KARS_uc002fes.2_Missense_Mutation_p.Y185H	NM_005548	NP_005539	Q15046	SYK_HUMAN	lysyl-tRNA synthetase isoform 2	341		Substrate.			interspecies interaction between organisms|lysyl-tRNA aminoacylation|tRNA processing	cytosol|extracellular region|mitochondrial matrix|nucleus|plasma membrane|soluble fraction	ATP binding|lysine-tRNA ligase activity|metal ion binding|tRNA binding			ovary(2)	2					L-Lysine(DB00123)	TAGGCCATGTAGAACTCACAG	0.498													3	106					0	0	0.004672	0	0
PLCG2	5336	broad.mit.edu	37	16	81969973	81969973	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:81969973C>T	uc002fgt.2	+	27	3194	c.3042C>T	c.(3040-3042)TTC>TTT	p.F1014F		NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	1014	PI-PLC Y-box.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						CACTCAATTTCCAGACGGCAG	0.582													7	12					0	0	0.001984	0	0
DPEP1	1800	broad.mit.edu	37	16	89703657	89703657	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:89703657G>A	uc010cin.2	+	7	840	c.637G>A	c.(637-639)GCT>ACT	p.A213T	DPEP1_uc002fnr.3_Missense_Mutation_p.A213T|DPEP1_uc002fns.3_Missense_Mutation_p.A213T	NM_001128141	NP_001121613	P16444	DPEP1_HUMAN	dipeptidase 1 precursor	213					proteolysis	anchored to membrane|apical plasma membrane|microvillus membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity|protein binding			large_intestine(1)	1		all_lung(18;0.0054)|all_hematologic(23;0.094)		BRCA - Breast invasive adenocarcinoma(80;0.0258)	Cilastatin(DB01597)	CATCGACTTGGCTCACGTGTC	0.667													31	30					0	0	0.003271	0	0
GGT6	124975	broad.mit.edu	37	17	4461605	4461605	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr17:4461605C>T	uc002fyd.3	-	4	1247	c.1187G>A	c.(1186-1188)AGT>AAT	p.S396N	MYBBP1A_uc002fxz.3_5'Flank|MYBBP1A_uc002fyb.3_5'Flank|GGT6_uc010vsb.1_Missense_Mutation_p.S248N|GGT6_uc002fyc.3_Missense_Mutation_p.S364N|GGT6_uc010vsc.1_Missense_Mutation_p.S402N	NM_001122890	NP_001116362	Q6P531	GGT6_HUMAN	gamma-glutamyltransferase 6 isoform a	396	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			skin(1)	1						GGCCCAGGCACTAGTGGTAGA	0.622													26	41					0	0	0.006320	0	0
ATP1B2	482	broad.mit.edu	37	17	7557429	7557429	+	Missense_Mutation	SNP	G	A	A	rs139562417		TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr17:7557429G>A	uc002gif.1	+	4	989	c.406G>A	c.(406-408)GAA>AAA	p.E136K		NM_001678	NP_001669	P14415	AT1B2_HUMAN	Na+/K+ -ATPase beta 2 subunit	136	Extracellular (Potential).				ATP biosynthetic process|blood coagulation|leukocyte migration	integral to membrane|plasma membrane	protein binding|sodium:potassium-exchanging ATPase activity	p.0?(2)|p.?(1)		central_nervous_system(1)|pancreas(1)	2		all_cancers(10;0.000178)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;2.55e-06)|READ - Rectum adenocarcinoma(115;0.168)		ACGCTATTACGAACAGCCAGA	0.552													94	150					0	0	0.014410	0	0
DNAH2	146754	broad.mit.edu	37	17	7722568	7722568	+	Silent	SNP	C	T	T	rs111592711		TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr17:7722568C>T	uc002giu.1	+	71	10871	c.10857C>T	c.(10855-10857)TTC>TTT	p.F3619F	DNAH2_uc010cnm.1_Silent_p.F557F	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3619					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TCCTGTTCTTCGTGCTCAATG	0.587													30	39					0	0	0.009535	0	0
UBB	7314	broad.mit.edu	37	17	16285560	16285560	+	Silent	SNP	T	C	C			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr17:16285560T>C	uc002gpx.2	+	2	477	c.339T>C	c.(337-339)CCT>CCC	p.P113P	UBB_uc010vwe.1_Intron	NM_018955	NP_061828	P0CG47	UBB_HUMAN	ubiquitin B precursor	113	Ubiquitin-like 2.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)		AAGGCATCCCTCCCGACCAGC	0.557													3	75					0	0	0.004672	0	0
LGALS9C	654346	broad.mit.edu	37	17	18392260	18392260	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr17:18392260C>T	uc002gtw.2	+	5	520	c.450C>T	c.(448-450)CCC>CCT	p.P150P	LGALS9C_uc010vyb.1_Silent_p.P62P	NM_001040078	NP_001035167	Q6DKI2	LEG9C_HUMAN	galectin 9 like	150							sugar binding			ovary(1)	1						AACAGAATCCCCGCGCAGTCC	0.582													11	37					0	0	0.010729	0	0
FOXN1	8456	broad.mit.edu	37	17	26861437	26861437	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr17:26861437C>T	uc010crm.2	+	7	1214	c.1016C>T	c.(1015-1017)TCC>TTC	p.S339F	FOXN1_uc002hbj.2_Missense_Mutation_p.S339F	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	339	Fork-head.				defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					TCAGGAAGTTCCTCCCGCAAG	0.547													27	31					0	0	0.003954	0	0
NF1	4763	broad.mit.edu	37	17	29533315	29533315	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr17:29533315C>T	uc002hgg.2	+	12	1651	c.1318C>T	c.(1318-1320)CGA>TGA	p.R440*	NF1_uc002hge.1_Nonsense_Mutation_p.R440*|NF1_uc002hgf.1_Nonsense_Mutation_p.R440*|NF1_uc002hgh.2_Nonsense_Mutation_p.R440*|NF1_uc010csn.1_Nonsense_Mutation_p.R300*	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	440					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		GGTTGAACTTCGAAATATGTT	0.398			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			38	4					0	0	0.005524	0	0
Unknown	0	broad.mit.edu	37	17	39296152	39296152	+	RNA	SNP	A	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr17:39296152A>G	uc010cxk.1	-	1		c.552T>C								Homo sapiens partial mRNA for keratin associated protein 4.6 (KRTAP4.6 gene).																		AGCACAAGGGACGGGGGCAGG	0.507													2	6					0	0	0.004672	0	0
C17orf53	78995	broad.mit.edu	37	17	42225491	42225491	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr17:42225491C>T	uc002ifi.1	+	3	505	c.320C>T	c.(319-321)TCC>TTC	p.S107F	C17orf53_uc010czq.1_Missense_Mutation_p.S107F|C17orf53_uc002ifj.1_Missense_Mutation_p.S107F|C17orf53_uc002ifk.1_RNA	NM_024032	NP_076937	Q8N3J3	CQ053_HUMAN	hypothetical protein LOC78995	107											0		Breast(137;0.0364)|Prostate(33;0.0376)		BRCA - Breast invasive adenocarcinoma(366;0.114)		GTCTCTACTTCCAGCAGCTGG	0.567													90	7					0	0	0.014410	0	0
ACE	1636	broad.mit.edu	37	17	61560861	61560861	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr17:61560861G>A	uc002jau.1	+	10	1550	c.1528G>A	c.(1528-1530)GAA>AAA	p.E510K	ACE_uc010wpi.1_Silent_p.T461T|ACE_uc010ddu.1_Missense_Mutation_p.E327K|ACE_uc002jav.1_5'Flank|ACE_uc010ddv.1_5'Flank|ACE_uc010wpj.1_5'Flank|ACE_uc002jaw.1_5'Flank|ACE_uc010wpk.1_5'Flank	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	510	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	TACCCGAAACGAAACCCACTT	0.478													107	15					0	0	0.014410	0	0
LGALS3BP	3959	broad.mit.edu	37	17	76968665	76968666	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr17:76968665_76968666GG>AA	uc002jwh.2	-	6	929_930	c.750_751CC>TT	c.(748-753)CTCCTC>CTTTTC	p.L251F	LGALS3BP_uc002jwi.2_Missense_Mutation_p.L57F|LGALS3BP_uc010dhr.2_Missense_Mutation_p.L57F	NM_005567	NP_005558	Q08380	LG3BP_HUMAN	galectin 3 binding protein	251					cell adhesion|cellular defense response	extracellular space|membrane|proteinaceous extracellular matrix	protein binding|scavenger receptor activity			central_nervous_system(3)|ovary(1)	4			BRCA - Breast invasive adenocarcinoma(99;0.0677)|OV - Ovarian serous cystadenocarcinoma(97;0.139)			TCCTGGGGGAGGAGGATGGCAA	0.619													65	9					0	0	0.004672	0	0
TBCD	6904	broad.mit.edu	37	17	80858571	80858571	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr17:80858571A>G	uc002kfz.2	+	18	1824	c.1694A>G	c.(1693-1695)GAC>GGC	p.D565G	TBCD_uc002kfx.1_Missense_Mutation_p.D548G|TBCD_uc002kfy.1_Missense_Mutation_p.D565G|TBCD_uc002kgb.1_5'UTR	NM_005993	NP_005984	Q9BTW9	TBCD_HUMAN	beta-tubulin cofactor D	565	HEAT 2.				'de novo' posttranslational protein folding|adherens junction assembly|negative regulation of cell-substrate adhesion|negative regulation of microtubule polymerization|post-chaperonin tubulin folding pathway|tight junction assembly	adherens junction|cytoplasm|lateral plasma membrane|microtubule|tight junction	beta-tubulin binding|chaperone binding|GTPase activator activity				0	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0266)|all_epithelial(8;0.0696)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.18)			CCAATGATAGACCACCTGGTT	0.338													3	76					0	0	0.004672	0	0
KIAA0802	23255	broad.mit.edu	37	18	8784733	8784733	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr18:8784733C>T	uc002knr.2	+	6	1765	c.1623C>T	c.(1621-1623)TCC>TCT	p.S541S	KIAA0802_uc002knq.2_Silent_p.S541S|KIAA0802_uc010dkw.1_Silent_p.S379S	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	892											0						ATGGCCTATCCCCCTTGCCCC	0.617													93	51					0	0	0.014410	0	0
POTEC	388468	broad.mit.edu	37	18	14542973	14542973	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr18:14542973C>T	uc010dln.2	-	1	627	c.173G>A	c.(172-174)AGG>AAG	p.R58K	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	58										skin(3)	3						CATCTTGCTCCTGAGCATCTT	0.582													38	320					0	0	0.014410	0	0
CTAGE1	64693	broad.mit.edu	37	18	19997134	19997134	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr18:19997134C>T	uc002ktv.1	-	1	745	c.641G>A	c.(640-642)AGA>AAA	p.R214K		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	214	Potential.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					TTCAAATGTTCTTTTCTGTTT	0.363													55	40					0	0	0.014410	0	0
SS18	6760	broad.mit.edu	37	18	23619270	23619270	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr18:23619270T>C	uc002kvm.2	-	6	836	c.758A>G	c.(757-759)TAT>TGT	p.Y253C	SS18_uc002kvn.2_Missense_Mutation_p.Y253C|SS18_uc010xbf.1_Missense_Mutation_p.Y171C|SS18_uc010xbg.1_Missense_Mutation_p.Y201C|SS18_uc010xbh.1_Missense_Mutation_p.Y201C|SS18_uc010xbi.1_Missense_Mutation_p.Y230C|SS18_uc010dlz.1_Missense_Mutation_p.Y201C	NM_001007559	NP_001007560	Q15532	SSXT_HUMAN	synovial sarcoma translocation, chromosome 18	253	Gln-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	ligand-dependent nuclear receptor transcription coactivator activity|protein binding		SS18/SSX1(1169)|SS18/SSX2(702)|SS18/SSX4(12)	soft_tissue(1883)|ovary(1)	1884	all_cancers(21;0.000194)|Lung NSC(5;0.000413)|all_lung(6;0.00118)|Ovarian(20;0.124)					AGGAGGTCTATAGGGAGGAAT	0.408			T	SSX1| SSX2	synovial sarcoma								6	43					0	0	0.001168	0	0
DTNA	1837	broad.mit.edu	37	18	32345942	32345942	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr18:32345942C>T	uc010dmn.1	+	2	86	c.85C>T	c.(85-87)CGC>TGC	p.R29C	DTNA_uc002kxu.2_Missense_Mutation_p.R29C|DTNA_uc010xbx.1_Missense_Mutation_p.R29C|DTNA_uc002kxv.3_Missense_Mutation_p.R29C|DTNA_uc002kxw.2_Missense_Mutation_p.R29C|DTNA_uc002kxx.2_Missense_Mutation_p.R29C|DTNA_uc010dmj.2_Missense_Mutation_p.R29C|DTNA_uc002kxz.2_Missense_Mutation_p.R29C|DTNA_uc002kxy.2_Missense_Mutation_p.R29C|DTNA_uc010dmk.1_RNA|DTNA_uc010dml.2_Missense_Mutation_p.R29C|DTNA_uc002kyb.3_Missense_Mutation_p.R29C|DTNA_uc010dmm.2_Missense_Mutation_p.R29C	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	29	Interaction with MAGEE1 (By similarity).				neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						AGATCTGGATCGCATCCGACT	0.408													12	13					0	0	0.004007	0	0
CELF4	56853	broad.mit.edu	37	18	34853081	34853081	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr18:34853081C>T	uc002lae.2	-	7	1243	c.847G>A	c.(847-849)GGC>AGC	p.G283S	CELF4_uc010dnd.1_Missense_Mutation_p.G281S|CELF4_uc002lag.2_Missense_Mutation_p.G273S|CELF4_uc002laf.2_Missense_Mutation_p.G278S|CELF4_uc002lai.2_Missense_Mutation_p.G268S|CELF4_uc002lah.1_Missense_Mutation_p.G8S|CELF4_uc002laj.1_Missense_Mutation_p.R118Q	NM_020180	NP_064565	Q9BZC1	CELF4_HUMAN	bruno-like 4, RNA binding protein isoform 1	283	Sufficient for RNA-binding and MSE- dependent splicing activity.|Ala-rich.				embryo development|germ cell development|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	BRE binding|nucleotide binding|translation repressor activity, nucleic acid binding			ovary(2)	2						TTCAGGTAGCCGCCCTGCGCG	0.642													50	32					0	0	0.014410	0	0
SETBP1	26040	broad.mit.edu	37	18	42618621	42618621	+	Splice_Site	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr18:42618621G>A	uc010dni.2	+	5	4467	c.4171_splice	c.e5+1	p.V1391_splice		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a							nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		TCGGATGCAGGTGAGCACTTT	0.493									Schinzel-Giedion_syndrome				8	11					0	0	0.004482	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555242	44555242	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr18:44555242C>T	uc010xdb.1	-	1	1208	c.972G>A	c.(970-972)TCG>TCA	p.S324S	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	324	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						GCCTGGAGCCCGAGTACACCG	0.667													28	855					0	0	0.008361	0	0
DCC	1630	broad.mit.edu	37	18	51025778	51025778	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr18:51025778C>T	uc002lfe.1	+	27	4596	c.4009C>T	c.(4009-4011)CGA>TGA	p.R1337*	DCC_uc010dpf.1_Nonsense_Mutation_p.R970*	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1337	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AGCTTGTGTTCGACCAACTCA	0.532													13	35					0	0	0.001855	0	0
SERPINB2	5055	broad.mit.edu	37	18	61562584	61562584	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr18:61562584C>T	uc010xeu.1	+	4	588	c.255C>T	c.(253-255)ATC>ATT	p.I85I	SERPINB2_uc002ljo.2_Silent_p.I85I|SERPINB2_uc010dqh.2_Silent_p.I15I|SERPINB2_uc002ljp.1_5'Flank|SERPINB2_uc002ljq.1_5'Flank	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	85					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	TGCAGCAGATCCAGAAGGGTA	0.408													53	24					0	0	0.014410	0	0
ZNRF4	148066	broad.mit.edu	37	19	5455739	5455739	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr19:5455739C>T	uc002mca.3	+	1	314	c.237C>T	c.(235-237)GCC>GCT	p.A79A		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	79	Extracellular (Potential).					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		CGGGCCGAGCCCTCGTGGCAG	0.667													51	61					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9047571	9047571	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr19:9047571G>A	uc002mkp.2	-	5	34264	c.34060C>T	c.(34060-34062)CCT>TCT	p.P11354S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11356	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGACTGCAGGATGAGTAACC	0.512													54	59					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9075901	9075901	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr19:9075901T>C	uc002mkp.2	-	3	11749	c.11545A>G	c.(11545-11547)ACT>GCT	p.T3849A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3850	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTCTGAAAAGTTGCATCTGGA	0.498													11	26					0	0	0.010729	0	0
CACNA1A	773	broad.mit.edu	37	19	13427954	13427954	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr19:13427954G>A	uc010dze.2	-	11	1766	c.1530C>T	c.(1528-1530)AAC>AAT	p.N510N	CACNA1A_uc010dzc.2_Silent_p.N35N|CACNA1A_uc002mwy.3_Silent_p.N509N|CACNA1A_uc010xne.1_Silent_p.N35N	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	510	II.|Extracellular (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	ACTCGGGCTGGTTGTAGTGAA	0.527													5	7					0	0	0.001168	0	0
PDE4C	5143	broad.mit.edu	37	19	18327582	18327582	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr19:18327582C>T	uc010xqc.1	-	12	1934	c.1454G>A	c.(1453-1455)CGA>CAA	p.R485Q	PDE4C_uc002nik.3_Missense_Mutation_p.R485Q|PDE4C_uc002nil.3_Missense_Mutation_p.R485Q|PDE4C_uc002nif.3_Missense_Mutation_p.R254Q|PDE4C_uc002nig.3_Missense_Mutation_p.R200Q|PDE4C_uc002nih.3_Missense_Mutation_p.R255Q|PDE4C_uc010ebk.2_Missense_Mutation_p.R379Q|PDE4C_uc002nii.3_Missense_Mutation_p.R453Q|PDE4C_uc010ebl.2_Missense_Mutation_p.R199Q|PDE4C_uc010xqd.1_Missense_Mutation_p.R254Q	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	485					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	CAGACTCAGTCGCTGCTTGGC	0.612													55	49					0	0	0.014410	0	0
KIAA1683	80726	broad.mit.edu	37	19	18376574	18376574	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr19:18376574G>A	uc002nin.2	-	3	1992	c.1776C>T	c.(1774-1776)GTC>GTT	p.V592V	KIAA1683_uc010ebn.2_Silent_p.V592V|KIAA1683_uc010xqe.1_Silent_p.V546V	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	592						mitochondrion				ovary(2)	2						CAGCCCTGGGGACCCCAGTTC	0.552													19	21					0	0	0.008871	0	0
RYR1	6261	broad.mit.edu	37	19	39071102	39071102	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr19:39071102G>A	uc002oit.2	+	101	14734	c.14604G>A	c.(14602-14604)GAG>GAA	p.E4868E	RYR1_uc002oiu.2_Silent_p.E4863E	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4868			FYNKSED -> Y (in CCD).		muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	ACAAGAGCGAGGATGAGGATG	0.458													34	46					0	0	0.006230	0	0
SPTBN4	57731	broad.mit.edu	37	19	41071462	41071462	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr19:41071462G>A	uc002ony.2	+	28	6135	c.6049G>A	c.(6049-6051)GAT>AAT	p.D2017N	SPTBN4_uc002onz.2_Missense_Mutation_p.D2017N|SPTBN4_uc010egx.2_Missense_Mutation_p.D760N	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	2017	Spectrin 17.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TGCCATGGCTGATGAGGTGGG	0.657													7	15					0	0	0.001984	0	0
CYP2B6	1555	broad.mit.edu	37	19	41512832	41512832	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr19:41512832C>T	uc002opr.1	+	4	514	c.507C>T	c.(505-507)TTC>TTT	p.F169F	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Intron	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	169					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	ACCCCACCTTCCTCTTCCAGT	0.502													13	11					0	0	0.001855	0	0
PSG6	5675	broad.mit.edu	37	19	43414971	43414971	+	Missense_Mutation	SNP	T	C	C	rs144744998		TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr19:43414971T>C	uc002ovj.1	-	3	519	c.467A>G	c.(466-468)AAC>AGC	p.N156S	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.N163S|PSG6_uc002ovi.2_Missense_Mutation_p.N157S|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_5'UTR|PSG6_uc002ovf.1_Missense_Mutation_p.N156S|PSG6_uc002ovg.1_Missense_Mutation_p.N156S	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	156	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				CTCCCTGGGGTTTAAGTTGCT	0.527													51	64					0	0	0.014410	0	0
CEACAM20	125931	broad.mit.edu	37	19	45024764	45024764	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr19:45024764G>A	uc010ejn.1	-	5	790	c.774C>T	c.(772-774)GTC>GTT	p.V258V	CEACAM20_uc010ejo.1_Silent_p.V258V|CEACAM20_uc010ejp.1_Silent_p.V258V|CEACAM20_uc010ejq.1_Silent_p.V258V	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	258	Extracellular (Potential).|Ig-like C2-type 3.					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				TTGAAGGCACGACTTGAGGCA	0.522													127	191					0	0	0.014410	0	0
CRX	1406	broad.mit.edu	37	19	48339556	48339556	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr19:48339556G>A	uc002phq.3	+	3	361	c.157G>A	c.(157-159)GAG>AAG	p.E53K	CRX_uc010elm.1_RNA	NM_000554	NP_000545	O43186	CRX_HUMAN	cone-rod homeobox protein	53	Homeobox.				organ morphogenesis|response to stimulus|visual perception		leucine zipper domain binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)	2		all_cancers(25;2.76e-09)|all_epithelial(76;7.01e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		OV - Ovarian serous cystadenocarcinoma(262;0.000266)|all cancers(93;0.000788)|Epithelial(262;0.0226)|GBM - Glioblastoma multiforme(486;0.0521)		CCAACTGGAGGAGCTGGAGGC	0.632													28	44					0	0	0.007291	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49340728	49340728	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr19:49340728G>A	uc002pkx.2	-	20	2709	c.2158C>T	c.(2158-2160)CCC>TCC	p.P720S	HSD17B14_uc002pkv.1_5'Flank|HSD17B14_uc010emk.1_5'Flank|PLEKHA4_uc002pkw.1_3'UTR|PLEKHA4_uc010eml.2_3'UTR	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	720						cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		GATCTGGGGGGAGGGGTCTCC	0.687													42	63					0	0	0.014410	0	0
IRF3	3661	broad.mit.edu	37	19	50166467	50166467	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr19:50166467C>T	uc010end.1	-	4	768	c.386G>A	c.(385-387)GGA>GAA	p.G129E	IRF3_uc002pos.1_5'Flank|IRF3_uc002pot.1_Missense_Mutation_p.G129E|IRF3_uc002pox.1_Missense_Mutation_p.G129E|IRF3_uc002poy.1_Missense_Mutation_p.G129E|IRF3_uc002pou.2_Missense_Mutation_p.G129E|IRF3_uc002pov.2_5'UTR|IRF3_uc002pow.2_Missense_Mutation_p.G129E|IRF3_uc002poz.1_Missense_Mutation_p.G129E|IRF3_uc010ene.1_Missense_Mutation_p.E72K|BCL2L12_uc002ppa.2_5'Flank|BCL2L12_uc002ppb.2_5'Flank	NM_001571	NP_001562	Q14653	IRF3_HUMAN	interferon regulatory factor 3	129					interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|response to virus|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytosol|endosome membrane|nucleoplasm|plasma membrane	DNA binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(2)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.02)		AGTACTGCCTCCACCATTGGT	0.572													67	85					0	0	0.014410	0	0
ZNF765	91661	broad.mit.edu	37	19	53911308	53911308	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr19:53911308C>T	uc010ydx.1	+	6	827	c.500C>T	c.(499-501)TCT>TTT	p.S167F	ZNF765_uc002qbm.2_Missense_Mutation_p.S167F|ZNF765_uc002qbn.2_Intron	NM_001040185	NP_001035275	Q7L2R6	ZN765_HUMAN	zinc finger protein 765	167					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00379)		GTTGTGAAGTCTATCCACGAT	0.378													24	18					0	0	0.002780	0	0
LILRP2	79166	broad.mit.edu	37	19	55221674	55221674	+	RNA	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr19:55221674C>T	uc002qgs.1	+	1		c.2074C>T			LILRP2_uc002qgt.1_Intron	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						ACCCACGCTCCGCACAGGCCC	0.667													5	13					0	0	0.000602	0	0
MYCN	4613	broad.mit.edu	37	2	16085831	16085831	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:16085831C>T	uc002rci.2	+	3	1307	c.1007C>T	c.(1006-1008)TCT>TTT	p.S336F	MYCN_uc010yjr.1_Missense_Mutation_p.S328F	NM_005378	NP_005369	P04198	MYCN_HUMAN	v-myc myelocytomatosis viral related oncogene,	336					regulation of transcription from RNA polymerase II promoter	chromatin|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5	all_cancers(1;1.35e-08)|all_neural(1;2.92e-24)|Lung SC(1;3.26e-07)|Medulloblastoma(1;6.9e-06)|all_lung(1;1.26e-05)|Glioma(3;0.135)|Acute lymphoblastic leukemia(172;0.155)|all_epithelial(1;0.169)|all_hematologic(175;0.197)		GBM - Glioblastoma multiforme(3;0.000332)			GCCGCCCCCTCTCCCTACGTG	0.612			A		neuroblastoma								12	6					0	0	0.010729	0	0
C2orf71	388939	broad.mit.edu	37	2	29287774	29287774	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:29287774G>A	uc002rmt.1	-	2	3828	c.3828C>T	c.(3826-3828)TCC>TCT	p.S1276S		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	1276					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CCTCTGGCTGGGATTTGTCCT	0.657													9	14					0	0	0.010729	0	0
XDH	7498	broad.mit.edu	37	2	31599976	31599977	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:31599976_31599977CC>TT	uc002rnv.1	-	14	1448_1449	c.1369_1370GG>AA	c.(1369-1371)GGT>AAT	p.G457N		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	457					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	GGCCATTCCACCATAGCAAAGG	0.495													35	42					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	2	38709001	38709001	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:38709001G>A	uc002rqu.1	+	1	76	c.9G>A	c.(7-9)AGG>AGA	p.R3R						SubName: Full=RPLP0 protein;																		TGATGCCCAGGGAAGACAGGG	0.483													11	5					0	0	0.001855	0	0
TTC7A	57217	broad.mit.edu	37	2	47249053	47249054	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:47249053_47249054CC>TT	uc002rvo.2	+	12	1813_1814	c.1445_1446CC>TT	c.(1444-1446)GCC>GTT	p.A482V	TTC7A_uc002rvm.2_Missense_Mutation_p.A448V|TTC7A_uc002rvn.1_Missense_Mutation_p.A363V|TTC7A_uc010fbb.2_Missense_Mutation_p.A482V|TTC7A_uc010fbc.2_Missense_Mutation_p.A128V|TTC7A_uc002rvp.2_Missense_Mutation_p.A363V|TTC7A_uc002rvq.2_Missense_Mutation_p.A222V|TTC7A_uc002rvr.2_Intron	NM_020458	NP_065191	Q9ULT0	TTC7A_HUMAN	tetratricopeptide repeat domain 7A	482							binding			breast(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			GGAGAGGAAGCCGGGGAGTTCC	0.604													39	45					0	0	0.004672	0	0
BCL11A	53335	broad.mit.edu	37	2	60689199	60689199	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:60689199C>T	uc002sae.1	-	4	1076	c.848G>A	c.(847-849)GGG>GAG	p.G283E	BCL11A_uc002sab.2_Missense_Mutation_p.G283E|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Missense_Mutation_p.G249E|BCL11A_uc002sad.1_Missense_Mutation_p.G131E|BCL11A_uc002saf.1_Missense_Mutation_p.G249E	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	283	Pro-rich.				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			CTCTTCCGCCCCCAGGCGCTC	0.627			T	IGH@	B-CLL								242	334					0	0	0.014410	0	0
ETAA1	54465	broad.mit.edu	37	2	67631024	67631024	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:67631024C>T	uc002sdz.1	+	5	1349	c.1210C>T	c.(1210-1212)CCT>TCT	p.P404S		NM_019002	NP_061875	Q9NY74	ETAA1_HUMAN	ETAA16 protein	404						cytoplasm|nucleus				ovary(3)|large_intestine(1)	4						TGAACTCTTTCCTTCTAAAAC	0.353													8	16					0	0	0.003080	0	0
CTNNA2	1496	broad.mit.edu	37	2	80085151	80085151	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:80085151G>A	uc010ysh.1	+	3	316	c.311G>A	c.(310-312)CGG>CAG	p.R104Q	CTNNA2_uc010yse.1_Missense_Mutation_p.R104Q|CTNNA2_uc010ysf.1_Missense_Mutation_p.R104Q|CTNNA2_uc010ysg.1_Missense_Mutation_p.R104Q	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	104					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						GAGACGATGCGGATCGCCTCC	0.562													33	49					0	0	0.013726	0	0
Unknown	0	broad.mit.edu	37	2	95558300	95558300	+	RNA	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:95558300G>A	uc002stv.1	-	6		c.701C>T								Homo sapiens cDNA FLJ44118 fis, clone TESTI4047069.																		CACGTGTATGGATATTTCTTC	0.418													5	6					0	0	0.001984	0	0
SNRNP200	23020	broad.mit.edu	37	2	96949059	96949059	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:96949059G>A	uc002svu.2	-	34	4881	c.4795C>T	c.(4795-4797)CCG>TCG	p.P1599S	SNRNP200_uc002svt.2_Missense_Mutation_p.P209S|SNRNP200_uc010yuj.1_RNA|SNRNP200_uc002svv.1_Missense_Mutation_p.P126S	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	1599	Helicase C-terminal 2.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						TCCAGGTACGGAATCAGATCC	0.567													29	33					0	0	0.007291	0	0
REV1	51455	broad.mit.edu	37	2	100040690	100040690	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:100040690G>A	uc002tad.2	-	10	1812	c.1600C>T	c.(1600-1602)CCT>TCT	p.P534S	REV1_uc002tac.2_Missense_Mutation_p.P533S	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	534	UmuC.				DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						TGAAGATTAGGACATAGTTGT	0.373								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					7	5					0	0	0.001984	0	0
MAP4K4	9448	broad.mit.edu	37	2	102446002	102446002	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:102446002C>G	uc002tbg.2	+	6	509	c.454C>G	c.(454-456)CGG>GGG	p.R152G	MAP4K4_uc002tbc.2_Missense_Mutation_p.R152G|MAP4K4_uc002tbd.2_Missense_Mutation_p.R152G|MAP4K4_uc002tbe.2_Missense_Mutation_p.R152G|MAP4K4_uc002tbf.2_Missense_Mutation_p.R152G|MAP4K4_uc010yvy.1_Missense_Mutation_p.R152G|MAP4K4_uc002tbh.2_Missense_Mutation_p.R152G|MAP4K4_uc002tbi.2_Missense_Mutation_p.R152G|MAP4K4_uc010yvz.1_Missense_Mutation_p.R132G|MAP4K4_uc010fiw.1_Intron|MAP4K4_uc002tbj.1_Missense_Mutation_p.R48G	NM_145687	NP_663720	O95819	M4K4_HUMAN	mitogen-activated protein kinase kinase kinase	152	Protein kinase.				intracellular protein kinase cascade|regulation of JNK cascade|response to stress	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	4						TGTGATTCACCGGGATATCAA	0.443													4	3					0	0	0.000602	0	0
RANBP2	5903	broad.mit.edu	37	2	109382668	109382668	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:109382668C>T	uc002tem.3	+	20	5799	c.5673C>T	c.(5671-5673)ATC>ATT	p.I1891I		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	1891					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						GATTTTCCATCCCTGTGTCTG	0.378													35	53					0	0	0.004878	0	0
CCDC138	165055	broad.mit.edu	37	2	109489947	109489947	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:109489947A>T	uc002ten.1	+	14	1794	c.1734A>T	c.(1732-1734)TTA>TTT	p.L578F	CCDC138_uc002teo.1_Intron|CCDC138_uc002tep.1_Missense_Mutation_p.L262F|CCDC138_uc010fjm.1_Intron	NM_144978	NP_659415	Q96M89	CC138_HUMAN	coiled-coil domain containing 138	578											0						GCAACTCTTTATTTTTTCGTA	0.368													13	9					0	0	0.013537	0	0
BUB1	699	broad.mit.edu	37	2	111398697	111398697	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:111398697G>A	uc002tgc.2	-	23	2981	c.2869C>T	c.(2869-2871)CCA>TCA	p.P957S	BUB1_uc010yxh.1_Missense_Mutation_p.P937S|BUB1_uc010fkb.2_Missense_Mutation_p.P900S	NM_004336	NP_004327	O43683	BUB1_HUMAN	budding uninhibited by benzimidazoles 1	957	Protein kinase.				apoptosis|cell division|chromosome segregation|interspecies interaction between organisms|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|regulation of sister chromatid cohesion	condensed chromosome kinetochore|cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|breast(2)|stomach(1)|ovary(1)|kidney(1)	7		Ovarian(717;0.0822)		BRCA - Breast invasive adenocarcinoma(221;0.0556)		GTTCCTTTTGGAAAAAGTTTC	0.368													16	16					0	0	0.004007	0	0
POTEF	728378	broad.mit.edu	37	2	130832275	130832275	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:130832275C>T	uc010fmh.2	-	17	3170	c.2770G>A	c.(2770-2772)GAG>AAG	p.E924K		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	924	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						ATCTCCTGCTCGAAGTCCAGG	0.592													13	31					0	0	0.003163	0	0
THSD7B	80731	broad.mit.edu	37	2	137813992	137813992	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:137813992C>T	uc002tva.1	+	2	49	c.49C>T	c.(49-51)CCG>TCG	p.P17S	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_5'UTR	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GCCTGTAGGTCCGTGGGGAAG	0.473													8	8					0	0	0.006214	0	0
LRP1B	53353	broad.mit.edu	37	2	141986907	141986907	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:141986907C>T	uc002tvj.1	-	6	1667	c.695G>A	c.(694-696)GGA>GAA	p.G232E	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	232	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AATTTCATTTCCATTGACTGA	0.299										TSP Lung(27;0.18)			12	6					0	0	0.013537	0	0
GALNT13	114805	broad.mit.edu	37	2	155115593	155115593	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:155115593G>A	uc002tyr.3	+	8	1484	c.917G>A	c.(916-918)GGA>GAA	p.G306E	GALNT13_uc002tyt.3_Missense_Mutation_p.G306E|GALNT13_uc010foc.1_Missense_Mutation_p.G125E|GALNT13_uc010fod.2_Missense_Mutation_p.G59E	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	306	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						GAAGAGATAGGAACTTACGAT	0.333													9	18					0	0	0.006214	0	0
KCNJ3	3760	broad.mit.edu	37	2	155555495	155555495	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:155555495G>A	uc002tyv.1	+	1	403	c.208G>A	c.(208-210)GAC>AAC	p.D70N	KCNJ3_uc010zce.1_Missense_Mutation_p.D70N	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	70	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding	p.D70E(1)		upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	CTACCTCTCGGACCTCTTCAC	0.592													16	26					0	0	0.004007	0	0
COBLL1	22837	broad.mit.edu	37	2	165584664	165584664	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:165584664G>A	uc010zcw.1	-	6	759	c.635C>T	c.(634-636)ACC>ATC	p.T212I	COBLL1_uc002ucp.2_Missense_Mutation_p.T159I|COBLL1_uc002ucq.2_Missense_Mutation_p.T159I|COBLL1_uc010zcx.1_Missense_Mutation_p.T205I|COBLL1_uc002ucs.1_RNA	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	197										ovary(2)|pancreas(1)	3						TCTCACTATGGTCTTCTGTGT	0.363													10	13					0	0	0.008291	0	0
XIRP2	129446	broad.mit.edu	37	2	168103940	168103940	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:168103940G>A	uc002udx.2	+	8	6056	c.6038G>A	c.(6037-6039)AGA>AAA	p.R2013K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.R1838K|XIRP2_uc010fpq.2_Missense_Mutation_p.R1791K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1838					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GTAGAAGAAAGAACTGAGGTT	0.448													4	2					0	0	0.009096	0	0
TTN	7273	broad.mit.edu	37	2	179406269	179406269	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:179406269G>A	uc010zfg.1	-	299	90055	c.89831C>T	c.(89830-89832)TCC>TTC	p.S29944F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S23639F|TTN_uc010zfi.1_Missense_Mutation_p.S23572F|TTN_uc010zfj.1_Missense_Mutation_p.S23447F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30871							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCCATCACGGGAAACATCAAA	0.453													6	1					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179452725	179452725	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:179452725C>T	uc010zfg.1	-	254	55929	c.55705G>A	c.(55705-55707)GAA>AAA	p.E18569K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E12264K|TTN_uc010zfi.1_Missense_Mutation_p.E12197K|TTN_uc010zfj.1_Missense_Mutation_p.E12072K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19496							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTGGTTTTCATCCAAGCTG	0.468													5	1					0	0	0.000602	0	0
TTN	7273	broad.mit.edu	37	2	179638750	179638750	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:179638750T>G	uc010zfg.1	-	31	7369	c.7145A>C	c.(7144-7146)GAA>GCA	p.E2382A	TTN_uc010zfh.1_Missense_Mutation_p.E2336A|TTN_uc010zfi.1_Missense_Mutation_p.E2336A|TTN_uc010zfj.1_Missense_Mutation_p.E2336A|TTN_uc002unb.2_Missense_Mutation_p.E2382A|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2382							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCCACACTTTCCAAGGAGAC	0.463													10	12					0	0	0.006214	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802668	185802668	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:185802668A>G	uc002uph.2	+	4	3139	c.2545A>G	c.(2545-2547)ATA>GTA	p.I849V		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	849						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						GGATAGGTTAATAAGTGAAGA	0.348													7	11					0	0	0.004482	0	0
ADAM23	8745	broad.mit.edu	37	2	207459597	207459597	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:207459597G>A	uc002vbq.2	+	23	2438	c.2215G>A	c.(2215-2217)GAT>AAT	p.D739N	ADAM23_uc010ziv.1_RNA	NM_003812	NP_003803	O75077	ADA23_HUMAN	ADAM metallopeptidase domain 23 preproprotein	739	EGF-like.|Extracellular (Potential).				cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		CTGTCCACTCGATTCCAAGGG	0.483													14	15					0	0	0.001855	0	0
ABCA12	26154	broad.mit.edu	37	2	215852497	215852497	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:215852497G>A	uc002vew.2	-	27	4070	c.3850C>T	c.(3850-3852)CCC>TCC	p.P1284S	ABCA12_uc002vev.2_Missense_Mutation_p.P966S|ABCA12_uc010zjn.1_Missense_Mutation_p.P211S	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1284					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		AAATACCAGGGAGCTGCCATA	0.403													4	6					0	0	0.009096	0	0
CXCR2	3579	broad.mit.edu	37	2	218999642	218999642	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:218999642G>A	uc002vgz.1	+	4	343	c.118G>A	c.(118-120)GAA>AAA	p.E40K	CXCR2_uc002vha.1_Missense_Mutation_p.E40K|CXCR2_uc002vhb.1_Missense_Mutation_p.E40K	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	40	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						CGCCCCATGTGAACCAGAATC	0.468													48	67					0	0	0.014410	0	0
SPHKAP	80309	broad.mit.edu	37	2	228886515	228886515	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:228886515C>T	uc002vpq.2	-	6	656	c.609G>A	c.(607-609)ACG>ACA	p.T203T	SPHKAP_uc002vpp.2_Silent_p.T203T|SPHKAP_uc010zlx.1_Silent_p.T203T	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	203						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		AGGAACAGTTCGTGTCATCCT	0.463													14	11					0	0	0.003163	0	0
COL6A3	1293	broad.mit.edu	37	2	238249496	238249496	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:238249496G>A	uc002vwl.2	-	38	8348	c.8063C>T	c.(8062-8064)TCC>TTC	p.S2688F	COL6A3_uc002vwo.2_Missense_Mutation_p.S2482F|COL6A3_uc010znj.1_Missense_Mutation_p.S2081F|COL6A3_uc002vwj.2_Missense_Mutation_p.S69F	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2688	VWFA 12.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GTCAGTCAGGGAGAATTCCAC	0.582													22	28					0	0	0.012319	0	0
PASK	23178	broad.mit.edu	37	2	242077394	242077394	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:242077394G>A	uc002wao.1	-	6	942	c.850C>T	c.(850-852)CCT>TCT	p.P284S	PASK_uc010zol.1_Missense_Mutation_p.P98S|PASK_uc010zom.1_Missense_Mutation_p.P249S|PASK_uc010fzl.1_Missense_Mutation_p.P284S|PASK_uc010zon.1_Missense_Mutation_p.P65S|PASK_uc002waq.2_Missense_Mutation_p.P284S	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	284					regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		CCAGAAGGAGGGAGCTGCACA	0.562													29	25					0	0	0.009535	0	0
FARP2	9855	broad.mit.edu	37	2	242396209	242396210	+	Missense_Mutation	DNP	CC	TT	TT	rs145630778	by1000genomes	TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr2:242396209_242396210CC>TT	uc002wbi.1	+	14	1576_1577	c.1459_1460CC>TT	c.(1459-1461)CCC>TTC	p.P487F	FARP2_uc010zoq.1_Missense_Mutation_p.P487F|FARP2_uc010zor.1_Missense_Mutation_p.P487F	NM_014808	NP_055623	O94887	FARP2_HUMAN	FERM, RhoGEF and pleckstrin domain protein 2	487	Pro-rich.				axon guidance|neuron remodeling|Rac protein signal transduction|regulation of Rho protein signal transduction	cytoskeleton|cytosol|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(19;4.88e-34)|all_epithelial(40;4.81e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Lung NSC(271;0.0886)|Ovarian(221;0.0905)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;1.81e-33)|all cancers(36;1.61e-30)|OV - Ovarian serous cystadenocarcinoma(60;6.83e-15)|Kidney(56;1.19e-08)|KIRC - Kidney renal clear cell carcinoma(57;8.98e-08)|BRCA - Breast invasive adenocarcinoma(100;1.49e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00125)|Colorectal(34;0.0199)|COAD - Colon adenocarcinoma(134;0.121)		CCGGAAGAGCCCCCTGAGTCTG	0.619													48	64					0	0	0.004672	0	0
DEFB125	245938	broad.mit.edu	37	20	77012	77012	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr20:77012C>T	uc002wcw.2	+	2	425	c.425C>T	c.(424-426)TCC>TTC	p.S142F		NM_153325	NP_697020	Q8N687	DB125_HUMAN	defensin, beta 125 preproprotein	142					defense response to bacterium	extracellular region				ovary(1)|central_nervous_system(1)|skin(1)	3		all_cancers(10;7.65e-05)|Lung NSC(37;0.0417)|all_epithelial(17;0.0676)|all_lung(30;0.0713)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.156)			ACTGCTACTTCCGAGACTATG	0.438													27	39					0	0	0.009535	0	0
WFDC12	128488	broad.mit.edu	37	20	43752754	43752754	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr20:43752754C>T	uc002xnf.1	-	2	250	c.232G>A	c.(232-234)GAA>AAA	p.E78K		NM_080869	NP_543145	Q8WWY7	WFD12_HUMAN	WAP four-disulfide core domain 12 precursor	78					defense response to bacterium	extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TTACCTTCTTCCAGTTCCTTC	0.542													7	13					0	0	0.001984	0	0
SPATA2	9825	broad.mit.edu	37	20	48524859	48524859	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr20:48524859G>A	uc010gie.2	-	2	519	c.169C>T	c.(169-171)CCC>TCC	p.P57S	SPATA2_uc002xuw.2_Missense_Mutation_p.P57S|SPATA2_uc010zyn.1_Intron	NM_001135773	NP_001129245	Q9UM82	SPAT2_HUMAN	spermatogenesis associated 2	57					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus				central_nervous_system(1)|skin(1)	2	Hepatocellular(150;0.133)		BRCA - Breast invasive adenocarcinoma(9;4.03e-06)			CGATAAAAGGGATCCACCTTG	0.617													26	50					0	0	0.005443	0	0
PTK6	5753	broad.mit.edu	37	20	62162165	62162165	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr20:62162165C>T	uc002yfg.2	-	6	988	c.948G>A	c.(946-948)AGG>AGA	p.R316R	PTK6_uc011aay.1_Silent_p.R215R|PTK6_uc011aaz.1_Silent_p.R78R	NM_005975	NP_005966	Q13882	PTK6_HUMAN	PTK6 protein tyrosine kinase 6	316	Protein kinase.					cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|kidney(1)	2	all_cancers(38;2.51e-11)		Epithelial(9;1.5e-08)|all cancers(9;8.67e-08)|BRCA - Breast invasive adenocarcinoma(10;6.43e-06)			CGAGGATGTTCCTGGCGGCCA	0.537													34	17					0	0	0.003755	0	0
NPBWR2	2832	broad.mit.edu	37	20	62737760	62737760	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr20:62737760C>T	uc011abt.1	-	1	425	c.425G>A	c.(424-426)CGA>CAA	p.R142Q		NM_005286	NP_005277	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	142	Cytoplasmic (Potential).					plasma membrane	opioid receptor activity|protein binding			large_intestine(1)	1	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					CACCAGGTATCGGTCCACGCT	0.647													16	30					0	0	0.004990	0	0
SYNJ1	8867	broad.mit.edu	37	21	34018757	34018757	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr21:34018757G>A	uc002yqh.2	-	24	3310	c.3310C>T	c.(3310-3312)CCC>TCC	p.P1104S	SYNJ1_uc011ads.1_Missense_Mutation_p.P1060S|SYNJ1_uc002yqf.2_Missense_Mutation_p.P1065S|SYNJ1_uc002yqg.2_Missense_Mutation_p.P1060S|SYNJ1_uc002yqi.2_Missense_Mutation_p.P1104S	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	1065	Pro-rich.						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						GGTCTGATGGGAAGGGAAGGT	0.527													59	77					0	0	0.014410	0	0
AIRE	326	broad.mit.edu	37	21	45712900	45712900	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr21:45712900G>A	uc002zei.2	+	10	1247	c.1120G>A	c.(1120-1122)GGA>AGA	p.G374R	AIRE_uc010gpq.2_RNA|AIRE_uc002zej.2_Missense_Mutation_p.G177R|AIRE_uc010gpr.2_Missense_Mutation_p.G177R	NM_000383	NP_000374	O43918	AIRE_HUMAN	autoimmune regulator isoform 1	374					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|histone binding|transcription regulatory region DNA binding|translation regulator activity|zinc ion binding			skin(1)	1				Colorectal(79;0.0806)		TAGGTCGGCGGGAGAGGAGGT	0.682									Autoimmune_PolyEndocrinopathy_Candidiasis_Ectodermal_Dystrophy				29	38					0	0	0.004289	0	0
KRTAP10-10	353333	broad.mit.edu	37	21	46058017	46058017	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr21:46058017C>T	uc002zfq.2	+	1	745	c.683C>T	c.(682-684)TCC>TTC	p.S228F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181688	NP_859016	P60014	KR10A_HUMAN	keratin associated protein 10-10	228						keratin filament					0						TCCTGTGTTTCCCTCCTCTGC	0.682													31	37					0	0	0.013726	0	0
SLC19A1	6573	broad.mit.edu	37	21	46951827	46951827	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr21:46951827G>A	uc002zhl.1	-	3	544	c.425C>T	c.(424-426)TCT>TTT	p.S142F	SLC19A1_uc010gpy.1_Missense_Mutation_p.S142F|SLC19A1_uc011aft.1_Missense_Mutation_p.S102F|SLC19A1_uc002zhm.1_Missense_Mutation_p.S142F|SLC19A1_uc010gpz.1_Missense_Mutation_p.S21F	NM_194255	NP_919231	P41440	S19A1_HUMAN	solute carrier family 19 member 1	142	Helical; (Probable).				folic acid metabolic process	integral to plasma membrane|membrane fraction	folic acid binding|folic acid transporter activity|methotrexate transporter activity|reduced folate carrier activity				0				Colorectal(79;0.0569)|READ - Rectum adenocarcinoma(84;0.172)		CCGCACGAGAGAGAAGATGTA	0.672													3	6					0	0	0.004672	0	0
LZTR1	8216	broad.mit.edu	37	22	21346528	21346528	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr22:21346528G>A	uc002zto.2	+	10	1122	c.1019G>A	c.(1018-1020)CGA>CAA	p.R340Q	LZTR1_uc002ztn.2_Missense_Mutation_p.R299Q|LZTR1_uc011ahy.1_Missense_Mutation_p.R321Q|LZTR1_uc010gsr.1_Missense_Mutation_p.R211Q	NM_006767	NP_006758	Q8N653	LZTR1_HUMAN	leucine-zipper-like transcription regulator 1	340	Kelch 5.				anatomical structure morphogenesis		sequence-specific DNA binding transcription factor activity			ovary(2)|lung(2)	4	all_cancers(11;1.83e-25)|all_epithelial(7;9.19e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			GTGCCCGAGCGAGCCTGTGCT	0.612													33	39					0	0	0.003755	0	0
RFPL1	5988	broad.mit.edu	37	22	29835113	29835113	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr22:29835113G>A	uc003afn.2	+	1	542	c.333G>A	c.(331-333)AAG>AAA	p.K111K	RFPL1S_uc003afm.1_RNA	NM_021026	NP_066306	O75677	RFPL1_HUMAN	ret finger protein-like 1	111	B30.2/SPRY.						zinc ion binding				0						CCAAGCTGAAGAAGATTCTGC	0.517													26	46					0	0	0.007291	0	0
BPIL2	254240	broad.mit.edu	37	22	32853355	32853355	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr22:32853355G>A	uc003amn.2	-	1	19	c.19C>T	c.(19-21)CCA>TCA	p.P7S	BPIL2_uc010gwo.2_5'UTR|BPIL2_uc011amb.1_5'UTR|BPIL2_uc003amo.3_Missense_Mutation_p.P7S	NM_174932	NP_777592	Q8NFQ6	BPIL2_HUMAN	bactericidal/permeability-increasing	7						extracellular region	lipopolysaccharide binding|phospholipid binding			ovary(1)|skin(1)	2						CAGAGGACTGGGATTGTCTTT	0.398											OREG0003513	type=REGULATORY REGION|Gene=BPIL2|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	16	29					0	0	0.004007	0	0
CACNA1I	8911	broad.mit.edu	37	22	39966904	39966904	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr22:39966904C>T	uc003ayc.2	+	1	147	c.147C>T	c.(145-147)GTC>GTT	p.V49V	CACNA1I_uc003ayd.2_Silent_p.V49V	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	49	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	ATCCTCATGTCCCACACCCAG	0.657													41	54					0	0	0.009718	0	0
CACNA1I	8911	broad.mit.edu	37	22	40054286	40054286	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr22:40054286G>A	uc003ayc.2	+	11	2122	c.2122G>A	c.(2122-2124)GAC>AAC	p.D708N	CACNA1I_uc003ayd.2_Missense_Mutation_p.D673N|CACNA1I_uc003aye.2_Missense_Mutation_p.D623N|CACNA1I_uc003ayf.2_Missense_Mutation_p.D588N	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	708	Helical; Name=S3 of repeat II; (Potential).|II.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CAACATCTTCGACAGCATCAT	0.542													20	26					0	0	0.007413	0	0
PARVB	29780	broad.mit.edu	37	22	44395501	44395501	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr22:44395501C>T	uc003bem.2	+	2	207	c.159C>T	c.(157-159)CTC>CTT	p.L53L		NM_001003828	NP_001003828	Q9HBI1	PARVB_HUMAN	parvin, beta isoform a	Error:Variant_position_missing_in_Q9HBI1_after_alignment					cell adhesion|cell junction assembly	cytoskeleton|cytosol|focal adhesion	actin binding				0		Ovarian(80;0.0246)|all_neural(38;0.0423)				gttcacttctccctggctcag	0.169													67	110					0	0	0.014410	0	0
BRD1	23774	broad.mit.edu	37	22	50217002	50217002	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr22:50217002G>A	uc003biv.2	-	1	1451	c.964C>T	c.(964-966)CGG>TGG	p.R322W	BRD1_uc011arf.1_5'UTR|BRD1_uc011arg.1_Missense_Mutation_p.R322W|BRD1_uc011arh.1_Missense_Mutation_p.R322W|BRD1_uc003biu.3_Missense_Mutation_p.R322W	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	322					histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		AGTTTCCACCGGGCTGGAGGG	0.582													52	59					0	0	0.014410	0	0
SBF1	6305	broad.mit.edu	37	22	50898538	50898538	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr22:50898538G>A	uc003blh.2	-	26	3529	c.3334C>T	c.(3334-3336)CCC>TCC	p.P1112S	SBF1_uc011arx.1_Missense_Mutation_p.P776S	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	1112					protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		CGGTCGGAGGGCTTCAGGGCT	0.692													14	27					0	0	0.003163	0	0
LMCD1	29995	broad.mit.edu	37	3	8579092	8579092	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:8579092A>G	uc003bqq.2	+	3	467	c.353A>G	c.(352-354)TAC>TGC	p.Y118C	LMCD1_uc011atd.1_Missense_Mutation_p.Y45C|LMCD1_uc011ate.1_Intron|LMCD1_uc011atf.1_Missense_Mutation_p.Y45C	NM_014583	NP_055398	Q9NZU5	LMCD1_HUMAN	LIM and cysteine-rich domains 1	118	PET.				positive regulation of calcineurin-NFAT signaling pathway|regulation of cardiac muscle hypertrophy|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus	transcription corepressor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(96;0.124)		ACCATCACCTACGAGTGGGCT	0.502													31	51					0	0	0.013726	0	0
SRGAP3	9901	broad.mit.edu	37	3	9032423	9032423	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:9032423G>A	uc003brf.1	-	21	3335	c.2659C>T	c.(2659-2661)CCC>TCC	p.P887S	SRGAP3_uc003brg.1_Missense_Mutation_p.P863S	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	887					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		GCAGCCCGGGGTGGTGTGTCT	0.697			T	RAF1	pilocytic astrocytoma								11	25					0	0	0.010729	0	0
C3orf20	84077	broad.mit.edu	37	3	14813578	14813578	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:14813578C>T	uc003byy.2	+	16	2904	c.2500C>T	c.(2500-2502)CCC>TCC	p.P834S	C3orf20_uc003byz.2_Missense_Mutation_p.P712S|C3orf20_uc003bza.2_Missense_Mutation_p.P712S|C3orf20_uc003bzb.1_Missense_Mutation_p.P335S|C3orf20_uc011avj.1_Missense_Mutation_p.P161S	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	834						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						CTGCAGTGTTCCCAACTCTGT	0.577													29	40					0	0	0.008361	0	0
GALNTL2	117248	broad.mit.edu	37	3	16237400	16237400	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:16237400G>A	uc003car.3	+	2	1148	c.673G>A	c.(673-675)GAG>AAG	p.E225K	GALNTL2_uc003caq.3_5'UTR	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	225	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						CTTCCTGAAGGAGATCATCCT	0.607													15	20					0	0	0.004990	0	0
EFHB	151651	broad.mit.edu	37	3	19947215	19947215	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:19947215G>A	uc003cbl.3	-	6	1511	c.1315C>T	c.(1315-1317)CCA>TCA	p.P439S	EFHB_uc003cbm.2_Missense_Mutation_p.P309S	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	439					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						AAACTTGATGGGTTATACTTT	0.398													13	19					0	0	0.013537	0	0
ARPP21	10777	broad.mit.edu	37	3	35723313	35723313	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:35723313C>T	uc003cgb.2	+	3	334	c.70C>T	c.(70-72)CCA>TCA	p.P24S	ARPP21_uc003cga.2_Missense_Mutation_p.P24S|ARPP21_uc011axy.1_Missense_Mutation_p.P24S|ARPP21_uc003cfz.2_RNA|ARPP21_uc003cgc.2_Missense_Mutation_p.P24S|ARPP21_uc003cgd.2_Missense_Mutation_p.P24S|ARPP21_uc011axx.1_RNA|ARPP21_uc003cge.2_Missense_Mutation_p.P24S	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	24						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						GACGGCCACTCCAGAGAACGG	0.468													4	4					0	0	0.009096	0	0
DLEC1	9940	broad.mit.edu	37	3	38158082	38158082	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:38158082G>A	uc003cho.1	+	28	4016	c.3995G>A	c.(3994-3996)GGT>GAT	p.G1332D	DLEC1_uc003chp.1_Missense_Mutation_p.G1332D|DLEC1_uc010hgv.1_Missense_Mutation_p.G1335D|DLEC1_uc003chr.1_Missense_Mutation_p.G403D|DLEC1_uc010hgx.1_RNA|DLEC1_uc003chs.1_5'Flank	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	1332					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		ACCCCTGAGGGTGGCTGCCTC	0.627													49	70					0	0	0.014410	0	0
ZNF445	353274	broad.mit.edu	37	3	44489458	44489458	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:44489458G>A	uc003cnf.2	-	8	2053	c.1705C>T	c.(1705-1707)CTT>TTT	p.L569F	ZNF445_uc011azv.1_Missense_Mutation_p.L557F|ZNF445_uc011azw.1_Missense_Mutation_p.L569F	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	569					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		TTCAATTCAAGAAATTTCTTC	0.468													18	41					0	0	0.008871	0	0
RNF123	63891	broad.mit.edu	37	3	49753064	49753064	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:49753064C>T	uc003cxh.2	+	32	3153	c.3067C>T	c.(3067-3069)CCT>TCT	p.P1023S	RNF123_uc003cxi.2_RNA	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	1023						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		ACAGCAGGGTCCTGATGTGGC	0.612													20	34					0	0	0.008871	0	0
IFRD2	7866	broad.mit.edu	37	3	50327709	50327709	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:50327709C>T	uc011bdp.1	-	4	601	c.472G>A	c.(472-474)GGT>AGT	p.G158S	IFRD2_uc003czb.2_Missense_Mutation_p.G260S	NM_006764	NP_006755	Q12894	IFRD2_HUMAN	interferon-related developmental regulator 2	158							binding			lung(2)|ovary(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		TCAAGAGCACCCTGCCGGGTC	0.652													13	11					0	0	0.002450	0	0
OR5H2	79310	broad.mit.edu	37	3	98002205	98002205	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:98002205C>T	uc003dsj.1	+	1	474	c.474C>T	c.(472-474)TTC>TTT	p.F158F		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TAGGTGGCTTCCTCCATGCCT	0.343													13	16					0	0	0.001855	0	0
FILIP1L	11259	broad.mit.edu	37	3	99568213	99568213	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:99568213C>T	uc003dtm.2	-	5	2770	c.2307G>A	c.(2305-2307)AAG>AAA	p.K769K	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Silent_p.K769K|FILIP1L_uc010hpf.2_Silent_p.K345K|FILIP1L_uc010hpg.2_Silent_p.K529K|FILIP1L_uc003dtn.2_Silent_p.K529K|FILIP1L_uc003dtp.1_Silent_p.K529K	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	769	Potential.					cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						TCTCTAACTCCTTAGTGAGGT	0.408													18	20					0	0	0.008871	0	0
GPR128	84873	broad.mit.edu	37	3	100413831	100413831	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:100413831A>G	uc003duc.2	+	16	2648	c.2380A>G	c.(2380-2382)AAG>GAG	p.K794E	GPR128_uc011bhc.1_Missense_Mutation_p.K495E|GPR128_uc003dud.2_Missense_Mutation_p.K317E	NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	794	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						TGACAATGCAAAGGAAAGCAT	0.408													22	26					0	0	0.014323	0	0
DPPA2	151871	broad.mit.edu	37	3	109023485	109023485	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:109023485G>A	uc003dxo.2	-	7	938	c.691C>T	c.(691-693)CTC>TTC	p.L231F		NM_138815	NP_620170	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	231						nucleus	nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)	3						TCTGCCGAGAGAAGTCTGCCA	0.502													19	20					0	0	0.007413	0	0
KALRN	8997	broad.mit.edu	37	3	123987794	123987794	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:123987794G>A	uc003ehg.2	+	5	782	c.655G>A	c.(655-657)GAT>AAT	p.D219N	KALRN_uc010hrv.1_Missense_Mutation_p.D219N|KALRN_uc003ehf.1_Missense_Mutation_p.D219N|KALRN_uc011bjy.1_Missense_Mutation_p.D219N	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	219	Spectrin 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GTTTCCTGTGGATGTGGAGGG	0.627													12	14					0	0	0.001855	0	0
TXNDC6	347736	broad.mit.edu	37	3	138022439	138022439	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:138022439C>T	uc003esg.2	-	10	866	c.838G>A	c.(838-840)GGA>AGA	p.G280R	TXNDC6_uc003esd.1_RNA|TXNDC6_uc010huf.1_Missense_Mutation_p.G195R|TXNDC6_uc003ese.1_Missense_Mutation_p.G219R	NM_178130	NP_835231	Q86XW9	TXND6_HUMAN	thioredoxin domain containing 6	280	NDK.				cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	cytoplasm|cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			breast(3)|ovary(1)|pancreas(1)	5						TCCCGGCTTCCATGGACGGCA	0.448													67	115					0	0	0.014410	0	0
PRR23B	389151	broad.mit.edu	37	3	138739354	138739354	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:138739354C>T	uc003esy.1	-	1	415	c.150G>A	c.(148-150)GGG>GGA	p.G50G		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	50										breast(1)	1						CGGCCGGGTCCCCCGCCGGGT	0.751													3	4					0	0	0.004672	0	0
SERPINI1	5274	broad.mit.edu	37	3	167510406	167510406	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:167510406G>A	uc003ffa.3	+	4	708	c.510G>A	c.(508-510)AGG>AGA	p.R170R	SERPINI1_uc003ffb.3_Silent_p.R170R	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	170					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						TATCCCCAAGGGATTTTGATG	0.383													8	11					0	0	0.003080	0	0
SAMD7	344658	broad.mit.edu	37	3	169654200	169654200	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:169654200G>A	uc003fgd.2	+	8	1382	c.1115G>A	c.(1114-1116)GGA>GAA	p.G372E	SAMD7_uc003fge.2_Missense_Mutation_p.G372E|SAMD7_uc011bpo.1_Missense_Mutation_p.G273E	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	372	SAM.									skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			GGCACTATGGGATTAAAGCTA	0.343													6	19					0	0	0.004482	0	0
HTR3E	285242	broad.mit.edu	37	3	183824092	183824092	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr3:183824092G>A	uc010hxq.2	+	8	1568	c.1102G>A	c.(1102-1104)GAA>AAA	p.E368K	HTR3E_uc003fml.3_Missense_Mutation_p.E353K|HTR3E_uc003fmm.2_Missense_Mutation_p.E383K|HTR3E_uc010hxr.2_Missense_Mutation_p.E394K|HTR3E_uc003fmn.2_Missense_Mutation_p.E368K	NM_182589	NP_872395	A5X5Y0	5HT3E_HUMAN	5-hydroxytryptamine receptor 3 subunit E	368	Cytoplasmic (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.46e-10)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			GCCCCAGAAGGAAAATAAGGG	0.527													11	8					0	0	0.013537	0	0
PIGG	54872	broad.mit.edu	37	4	520987	520987	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr4:520987C>T	uc003gak.3	+	10	2365	c.2229C>T	c.(2227-2229)TTC>TTT	p.F743F	PIGG_uc003gaj.3_Silent_p.F735F|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Silent_p.F610F|PIGG_uc003gal.3_Silent_p.F654F	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	743					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						GTGTCCGGTTCCCGTGGCGGC	0.652													24	28					0	0	0.006320	0	0
ADD1	118	broad.mit.edu	37	4	2900234	2900234	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr4:2900234C>T	uc003gfr.2	+	8	1148	c.960C>T	c.(958-960)AAC>AAT	p.N320N	ADD1_uc003gfn.2_Intron|ADD1_uc010ico.1_Silent_p.N320N|ADD1_uc003gfo.2_Silent_p.N320N|ADD1_uc003gfp.2_Silent_p.N320N|ADD1_uc003gfq.2_Silent_p.N320N|ADD1_uc003gfs.2_Silent_p.N320N|ADD1_uc003gft.3_Silent_p.N320N|ADD1_uc003gfu.2_Silent_p.N105N	NM_001119	NP_001110	P35611	ADDA_HUMAN	adducin 1 (alpha) isoform a	320					actin filament bundle assembly|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|positive regulation of protein binding	cytosol|F-actin capping protein complex|nucleus|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding|transcription factor binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		ACATCCATAACCTTGTGGTTG	0.473													61	59					0	0	0.014410	0	0
GSX2	170825	broad.mit.edu	37	4	54966573	54966573	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr4:54966573C>T	uc010igp.1	+	1	326	c.62C>T	c.(61-63)TCG>TTG	p.S21L	PDGFRA_uc003haa.2_Intron	NM_133267	NP_573574	Q9BZM3	GSX2_HUMAN	GS homeobox 2	21						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(7;0.00671)|Lung NSC(11;0.0154)|all_neural(26;0.0209)|Glioma(25;0.08)|all_epithelial(27;0.147)		LUSC - Lung squamous cell carcinoma(32;0.00216)			CCTGCGCCCTCGCTGCCTGAA	0.672													9	22					0	0	0.010729	0	0
AFM	173	broad.mit.edu	37	4	74353509	74353509	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr4:74353509G>A	uc003hhb.2	+	6	715	c.684G>A	c.(682-684)TTG>TTA	p.L228L		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	228	Albumin 2.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GGGCACTTTTGAAATTTGGAA	0.328													7	9					0	0	0.001984	0	0
FAM13A	10144	broad.mit.edu	37	4	89658686	89658687	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr4:89658686_89658687CC>TT	uc003hse.1	-	21	2790_2791	c.2582_2583GG>AA	c.(2581-2583)CGG>CAA	p.R861Q	FAM13A_uc011cdp.1_5'UTR|FAM13A_uc003hsa.1_Intron|FAM13A_uc003hsb.1_Missense_Mutation_p.R535Q|FAM13A_uc003hsd.1_Intron|FAM13A_uc003hsc.1_Missense_Mutation_p.R521Q|FAM13A_uc011cdq.1_Missense_Mutation_p.R507Q|FAM13A_uc003hsf.1_Missense_Mutation_p.R447Q|FAM13A_uc003hsg.1_Intron	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	861					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						AAGGGCTTCTCCGCTTGCTGGA	0.54													13	23					0	0	0.004672	0	0
TACR3	6870	broad.mit.edu	37	4	104511123	104511123	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr4:104511123G>A	uc003hxe.1	-	5	1257	c.1114C>T	c.(1114-1116)CGC>TGC	p.R372C		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	372	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		GGACACCAGCGAAATGCTCTC	0.448													8	5					0	0	0.003080	0	0
CFI	3426	broad.mit.edu	37	4	110682704	110682704	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr4:110682704G>A	uc003hzr.3	-	4	835	c.627C>T	c.(625-627)TTC>TTT	p.F209F	CFI_uc003hzq.2_Silent_p.F6F|CFI_uc011cft.1_Silent_p.F209F|CFI_uc003hzs.3_Silent_p.F209F	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	209	SRCR.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		CCACATCAGCGAAATCCTGGT	0.393													12	20					0	0	0.001855	0	0
ENPEP	2028	broad.mit.edu	37	4	111470779	111470779	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr4:111470779G>A	uc003iab.3	+	16	2663	c.2321G>A	c.(2320-2322)GGG>GAG	p.G774E		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	774	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	TGGCTAAATGGGACTGTAAGG	0.428													7	3					0	0	0.001984	0	0
KIAA1109	84162	broad.mit.edu	37	4	123274140	123274140	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr4:123274140C>T	uc003ieh.2	+	79	13976	c.13931C>T	c.(13930-13932)CCA>CTA	p.P4644L	KIAA1109_uc003iem.2_Missense_Mutation_p.P1000L	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4644					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TTTCAGATTCCATTACCAGAA	0.393													8	14					0	0	0.003080	0	0
TLR2	7097	broad.mit.edu	37	4	154625293	154625293	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr4:154625293C>T	uc003inq.2	+	3	1453	c.1234C>T	c.(1234-1236)CTG>TTG	p.L412L	TLR2_uc003inr.2_Silent_p.L412L|TLR2_uc003ins.2_Silent_p.L412L	NM_003264	NP_003255	O60603	TLR2_HUMAN	toll-like receptor 2 precursor	412	LRR 10.|Extracellular (Potential).				cellular response to diacyl bacterial lipopeptide|cellular response to lipoteichoic acid|cellular response to triacyl bacterial lipopeptide|detection of diacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|I-kappaB phosphorylation|induction of apoptosis|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of interferon-beta production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of Wnt receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|integral to plasma membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	Gram-positive bacterial cell surface binding|lipopolysaccharide receptor activity|peptidoglycan binding|protein heterodimerization activity|transmembrane receptor activity|triacyl lipopeptide binding			ovary(1)|lung(1)|breast(1)	3	all_hematologic(180;0.093)	Renal(120;0.117)				TTTGCTCACTCTGAAAAACTT	0.368													6	13					0	0	0.003080	0	0
ODZ3	55714	broad.mit.edu	37	4	183522201	183522201	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr4:183522201G>A	uc003ivd.1	+	3	673	c.636G>A	c.(634-636)AGG>AGA	p.R212R		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	212	Cytoplasmic (Potential).|Teneurin N-terminal.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CCAATAGAAGGAACCAGAGTC	0.587													58	79					0	0	0.014410	0	0
SORBS2	8470	broad.mit.edu	37	4	186544548	186544548	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr4:186544548C>T	uc003iyl.2	-	13	2881	c.2023G>A	c.(2023-2025)GAA>AAA	p.E675K	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Missense_Mutation_p.E775K|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Missense_Mutation_p.E579K|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Missense_Mutation_p.E789K|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	675						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		CTGGCTCTTTCGTGTTTTAAC	0.423													63	92					0	0	0.014410	0	0
F11	2160	broad.mit.edu	37	4	187197489	187197489	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr4:187197489C>T	uc003iza.1	+	7	1033	c.700C>T	c.(700-702)CCC>TCC	p.P234S		NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	234	Apple 3.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	CACTCATCATCCCGGTTGCTT	0.413													9	11					0	0	0.004482	0	0
SLC6A18	348932	broad.mit.edu	37	5	1240746	1240746	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr5:1240746A>G	uc003jby.1	+	7	1069	c.946A>G	c.(946-948)ACT>GCT	p.T316A		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	316	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GTTCAAAGCAACTAATGACTA	0.612													23	34					0	0	0.004656	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049314	36049314	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr5:36049314C>T	uc003jjz.1	-	4	613	c.520G>A	c.(520-522)GAA>AAA	p.E174K	UGT3A2_uc011cos.1_Missense_Mutation_p.E140K|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	174	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGCCCAAATTCCAAAGAGCCG	0.448													8	8					0	0	0.003080	0	0
NUP155	9631	broad.mit.edu	37	5	37328482	37328482	+	Silent	SNP	G	A	A	rs73749020		TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr5:37328482G>A	uc003jku.1	-	17	1972	c.1854C>T	c.(1852-1854)TCC>TCT	p.S618S	NUP155_uc003jkt.1_Silent_p.S559S|NUP155_uc010iuz.1_Silent_p.S618S	NM_153485	NP_705618	O75694	NU155_HUMAN	nucleoporin 155kDa isoform 1	618	Pro-rich.				carbohydrate metabolic process|glucose transport|mRNA transport|nucleocytoplasmic transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore|transporter activity			ovary(1)	1	all_lung(31;0.000137)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTCCCAAAAAGGATGGATTTG	0.353													8	9					0	0	0.006214	0	0
OSMR	9180	broad.mit.edu	37	5	38884043	38884043	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr5:38884043C>T	uc003jln.1	+	5	900	c.533C>T	c.(532-534)TCC>TTC	p.S178F	OSMR_uc003jlm.1_Missense_Mutation_p.S178F	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	178	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					AATAATGTATCCTGTTATTTG	0.373													11	16					0	0	0.008291	0	0
PLCXD3	345557	broad.mit.edu	37	5	41382221	41382221	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr5:41382221C>T	uc003jmm.1	-	2	621	c.519G>A	c.(517-519)GCG>GCA	p.A173A		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	173	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						GGGCAAAAATCGCTGGGCACA	0.428													10	14					0	0	0.008291	0	0
MCC	4163	broad.mit.edu	37	5	112406892	112406892	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr5:112406892G>A	uc003kqj.3	-	10	1784	c.1254C>T	c.(1252-1254)ACC>ACT	p.T418T	MCC_uc003kqk.3_RNA|MCC_uc003kql.3_Silent_p.T608T|MCC_uc011cwb.1_Silent_p.T418T|MCC_uc010jcd.1_Silent_p.T380T	NM_002387	NP_002378	P23508	CRCM_HUMAN	mutated in colorectal cancers isoform 2	418					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane	protein binding|receptor activity			ovary(1)	1		all_cancers(142;5.89e-08)|all_epithelial(76;3.57e-11)|all_lung(232;0.000605)|Lung NSC(810;0.000697)|Colorectal(10;0.00146)|Prostate(80;0.00174)|Ovarian(225;0.0175)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(64;2.04e-54)|Epithelial(69;9.69e-49)|all cancers(49;6.25e-44)|COAD - Colon adenocarcinoma(37;0.0432)|Colorectal(14;0.0766)		CCAAGGTTATGGTCAGGAGGT	0.453													38	62					0	0	0.006230	0	0
PCDHA12	56137	broad.mit.edu	37	5	140255890	140255890	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr5:140255890C>T	uc003lic.2	+	1	960	c.833C>T	c.(832-834)TCC>TTC	p.S278F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.S278F	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	278	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAGAAATTTCCTATGGGATC	0.368													75	88					0	0	0.014410	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431495	140431495	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr5:140431495C>T	uc003lik.1	+	1	517	c.440C>T	c.(439-441)CCT>CTT	p.P147L		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	147	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGAGCACCCCTTTGGGTTCA	0.532													12	20					0	0	0.003163	0	0
FAM71B	153745	broad.mit.edu	37	5	156590570	156590570	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr5:156590570C>T	uc003lwn.2	-	2	806	c.706G>A	c.(706-708)GGA>AGA	p.G236R		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	236	Ala-rich.					nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGTTGGATTCCCTCTCCCCCA	0.587													59	88					0	0	0.014410	0	0
DOCK2	1794	broad.mit.edu	37	5	169116293	169116293	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr5:169116293C>T	uc003maf.2	+	9	879	c.799C>T	c.(799-801)CCT>TCT	p.P267S	DOCK2_uc011der.1_RNA	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	267					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCGGGGCTTCCCTAAGGAGAT	0.498													15	16					0	0	0.004990	0	0
DUSP22	56940	broad.mit.edu	37	6	348139	348139	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:348139C>T	uc003msx.2	+	6	739	c.300C>T	c.(298-300)ATC>ATT	p.I100I	DUSP22_uc011dhn.1_Silent_p.I100I|DUSP22_uc003msy.1_Silent_p.I57I	NM_020185	NP_064570	Q9NRW4	DUS22_HUMAN	dual specificity phosphatase 22	100	Tyrosine-protein phosphatase.				apoptosis|cell proliferation|inactivation of MAPK activity|multicellular organismal development|positive regulation of JNK cascade|regulation of cell proliferation|transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(77;0.228)	Breast(5;0.0249)|all_hematologic(90;0.0489)		OV - Ovarian serous cystadenocarcinoma(45;0.0277)|BRCA - Breast invasive adenocarcinoma(62;0.0669)		CACTGGTGATCGCATACATCA	0.607													60	326					0	0	0.014410	0	0
LY86	9450	broad.mit.edu	37	6	6588994	6588994	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:6588994C>T	uc003mwy.1	+	1	61	c.27C>T	c.(25-27)TTC>TTT	p.F9F	LOC285780_uc003mww.3_Intron|LOC285780_uc003mwx.2_Intron	NM_004271	NP_004262	O95711	LY86_HUMAN	MD-1, RP105-associated precursor	9					apoptosis|cell proliferation|humoral immune response|inflammatory response|innate immune response	extracellular space|plasma membrane					0	Ovarian(93;0.0377)					CCACTCTCTTCCTCTGGACTC	0.542													39	23					0	0	0.007835	0	0
DSP	1832	broad.mit.edu	37	6	7584329	7584329	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:7584329G>A	uc003mxp.1	+	24	7113	c.6834G>A	c.(6832-6834)ATG>ATA	p.M2278I	DSP_uc003mxq.1_Missense_Mutation_p.M1679I	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2278	Plectin 7.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ATGAGGCCATGAAAATTGGCT	0.473													30	81					0	0	0.008361	0	0
GPLD1	2822	broad.mit.edu	37	6	24447092	24447092	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:24447092C>T	uc003ned.1	-	18	1905	c.1794G>A	c.(1792-1794)GGG>GGA	p.G598G		NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	598	FG-GAP 4.					extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						AGGTCGGGCTCCCAACCAACA	0.577													16	40					0	0	0.007413	0	0
Unknown	0	broad.mit.edu	37	6	25261617	25261617	+	RNA	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:25261617G>A	uc003nex.3	-	1		c.19C>T								Homo sapiens cDNA clone IMAGE:5297808.																		TGTTCAAAAAGGAATGCCCCA	0.398													3	9					0	0	0.004672	0	0
ZSCAN23	222696	broad.mit.edu	37	6	28403731	28403731	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:28403731G>A	uc003nli.3	-	2	494	c.313C>T	c.(313-315)CAG>TAG	p.Q105*	ZSCAN23_uc003nlh.2_RNA|ZSCAN23_uc010jrf.1_Intron|ZSCAN23_uc011dli.1_Nonsense_Mutation_p.Q105*	NM_001012455	NP_001012458	Q3MJ62	ZSC23_HUMAN	zinc finger protein 390	105	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ACCCAGGCCTGGAGCTCCTCA	0.592													5	19					0	0	0.001168	0	0
OR2W1	26692	broad.mit.edu	37	6	29012041	29012041	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:29012041C>T	uc003nlw.2	-	1	912	c.912G>A	c.(910-912)CTG>CTA	p.L304L		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						GAAATCTCATCAGTTTCTTCA	0.363													3	8					0	0	0.009096	0	0
BAT1	7919	broad.mit.edu	37	6	31500599	31500599	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:31500599G>C	uc003ntt.2	-	7	1456	c.825C>G	c.(823-825)AAC>AAG	p.N275K	BAT1_uc003ntq.2_5'Flank|BAT1_uc003ntr.2_Missense_Mutation_p.N82K|BAT1_uc003nts.2_Missense_Mutation_p.N275K|BAT1_uc011dnn.1_Missense_Mutation_p.N197K|BAT1_uc003ntu.2_Missense_Mutation_p.N275K|BAT1_uc003ntv.2_Missense_Mutation_p.N275K	NM_004640	NP_004631	Q13838	DX39B_HUMAN	HLA-B associated transcript 1	275	Helicase C-terminal.				intronless viral mRNA export from host nucleus|RNA secondary structure unwinding|spliceosome assembly	nuclear speck|spliceosomal complex|transcription export complex	ATP binding|ATP-dependent protein binding|ATP-dependent RNA helicase activity|identical protein binding|U4 snRNA binding|U6 snRNA binding				0						AGAGCTTCCGGTTCTTCTCGT	0.483													63	40					0	0	0.014410	0	0
VARS	7407	broad.mit.edu	37	6	31750940	31750940	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:31750940G>A	uc003nxe.2	-	14	2118	c.1695C>T	c.(1693-1695)ATC>ATT	p.I565I	VARS_uc003nxf.1_5'Flank|VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	565					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	GGAATGGGTGGATCACGTTCT	0.438													86	222					0	0	0.014410	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779021	31779021	+	Silent	SNP	G	A	A	rs140616297	byFrequency	TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:31779021G>A	uc003nxh.2	-	2	912	c.729C>T	c.(727-729)TTC>TTT	p.F243F	HSPA1L_uc010jte.2_Silent_p.F243F	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	243					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						ACTCCTCCACGAAGTGGCTCA	0.557													244	522					0	0	0.014410	0	0
DEF6	50619	broad.mit.edu	37	6	35285757	35285757	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:35285757G>A	uc003okk.2	+	6	936	c.897G>A	c.(895-897)CAG>CAA	p.Q299Q	DEF6_uc010jvs.2_Silent_p.Q299Q|DEF6_uc010jvt.2_Silent_p.Q44Q	NM_022047	NP_071330	Q9H4E7	DEFI6_HUMAN	differentially expressed in FDCP 6 homolog	299	PH.					cytoplasm|nucleus|plasma membrane					0						ACACGCGCCAGCGCCAGGAGT	0.488													7	25					0	0	0.003080	0	0
UNC5CL	222643	broad.mit.edu	37	6	40999785	40999785	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:40999785C>T	uc003opi.2	-	5	1130	c.1041G>A	c.(1039-1041)CGG>CGA	p.R347R		NM_173561	NP_775832	Q8IV45	UN5CL_HUMAN	unc-5 homolog C-like	347	Cytoplasmic (Potential).|Interaction with RELA and NFKB1.				signal transduction	cytoplasm|integral to membrane				ovary(2)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					CTGCTTTTCTCCGGAAGCAGA	0.438													21	57					0	0	0.014323	0	0
GPR111	222611	broad.mit.edu	37	6	47650081	47650081	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:47650081C>T	uc010jzj.1	+	6	1787	c.1786C>T	c.(1786-1788)CTC>TTC	p.L596F	GPR111_uc010jzk.1_Missense_Mutation_p.L528F|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	596	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						GATCTGCTGGCTCAACTGGGA	0.527													13	9					0	0	0.001855	0	0
TINAG	27283	broad.mit.edu	37	6	54191661	54191661	+	Missense_Mutation	SNP	C	T	T	rs115438249	byFrequency	TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:54191661C>T	uc003pcj.2	+	4	717	c.571C>T	c.(571-573)CGC>TGC	p.R191C	TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	191					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			TTTTAAATTTCGCCTTGGCAC	0.373													7	13					0	0	0.004482	0	0
C6orf165	154313	broad.mit.edu	37	6	88123580	88123580	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:88123580A>G	uc003plv.2	+	4	337	c.245A>G	c.(244-246)AAG>AGG	p.K82R	C6orf165_uc003plw.2_5'UTR|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Missense_Mutation_p.K82R	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	82										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		GACACTATTAAGATGCAAGTC	0.328													15	9					0	0	0.006122	0	0
PRDM13	59336	broad.mit.edu	37	6	100057179	100057179	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:100057179G>T	uc003pqg.1	+	3	654	c.393G>T	c.(391-393)GAG>GAT	p.E131D		NM_021620	NP_067633	Q9H4Q3	PRD13_HUMAN	PR domain containing 13	131					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(76;1.64e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0128)|Colorectal(196;0.069)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0598)		CTCACGACGAGAAAGGTACCC	0.542													16	3					2.48551e-13	2.68507e-13	0.004990	1	0
IGF2R	3482	broad.mit.edu	37	6	160445692	160445692	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr6:160445692C>T	uc003qta.2	+	5	750	c.602C>T	c.(601-603)TCC>TTC	p.S201F		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	201	2.|Lumenal (Potential).				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		GTGGATGACTCCGATCCGGAC	0.478													34	5					0	0	0.003271	0	0
GARS	2617	broad.mit.edu	37	7	30668228	30668228	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:30668228C>T	uc003tbm.2	+	14	2109	c.1752C>T	c.(1750-1752)ATC>ATT	p.I584I		NM_002047	NP_002038	P41250	SYG_HUMAN	glycyl-tRNA synthetase	584					cell death|diadenosine tetraphosphate biosynthetic process|glycyl-tRNA aminoacylation	cytosol|mitochondrial matrix|soluble fraction	ATP binding|glycine-tRNA ligase activity|protein dimerization activity			ovary(1)	1					Glycine(DB00145)	TGGGTAGGATCATGTATACGG	0.368													16	33					0	0	0.004990	0	0
NEUROD6	63974	broad.mit.edu	37	7	31378150	31378150	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:31378150C>T	uc003tch.2	-	2	1086	c.733G>A	c.(733-735)GAA>AAA	p.E245K		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	245					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						GAAGTACTTTCATAGAAGGAT	0.473													25	32					0	0	0.005443	0	0
NPC1L1	29881	broad.mit.edu	37	7	44571751	44571751	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:44571751C>T	uc003tlb.2	-	9	2531	c.2475G>A	c.(2473-2475)GAG>GAA	p.E825E	NPC1L1_uc003tlc.2_Silent_p.E825E|NPC1L1_uc011kbw.1_Silent_p.E825E	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	825	Cytoplasmic (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	GCAGGAGCCCCTCTCCCTGGC	0.642													44	51					0	0	0.014410	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44806095	44806095	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:44806095C>T	uc003tlr.2	+	18	2611	c.2488C>T	c.(2488-2490)CCT>TCT	p.P830S	ZMIZ2_uc003tlq.2_Missense_Mutation_p.P772S|ZMIZ2_uc003tls.2_Missense_Mutation_p.P804S|ZMIZ2_uc003tlt.2_Missense_Mutation_p.P453S|ZMIZ2_uc010kyj.2_Missense_Mutation_p.P352S|ZMIZ2_uc003tlu.2_Missense_Mutation_p.P111S|ZMIZ2_uc010kyk.1_5'Flank	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	830	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						CCTTGGGGCCCCTCCAGGTCC	0.597													52	59					0	0	0.014410	0	0
ZNF716	441234	broad.mit.edu	37	7	57522288	57522288	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:57522288C>T	uc011kdi.1	+	2	274	c.162C>T	c.(160-162)TCC>TCT	p.S54S		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						ACCTGGTCTCCCTGGGTGAGG	0.368													11	6					0	0	0.008291	0	0
TYW1B	441250	broad.mit.edu	37	7	72209570	72209570	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:72209570G>A	uc011kej.1	-	8	1132	c.973C>T	c.(973-975)CCG>TCG	p.P325S	TYW1B_uc011keh.1_Missense_Mutation_p.P163S|TYW1B_uc011kei.1_5'UTR|TYW1B_uc011kek.1_RNA	NM_001145440	NP_001138912	Q6NUM6	TYW1B_HUMAN	tRNA-yW synthesizing protein 1 homolog B isoform	325					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity				0						CTCTCCCTCGGAGCATCGACT	0.418													9	16					0	0	0.004482	0	0
PON1	5444	broad.mit.edu	37	7	94953774	94953774	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:94953774A>G	uc003uns.2	-	1	111	c.14T>C	c.(13-15)ATT>ACT	p.I5T	PON1_uc011kih.1_Intron	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	5					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	GGTGAGCGCAATCAGCTTCGC	0.622													12	21					0	0	0.013537	0	0
SRRT	51593	broad.mit.edu	37	7	100484463	100484463	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:100484463G>A	uc003uwy.2	+	15	1963	c.1695G>A	c.(1693-1695)CTG>CTA	p.L565L	SRRT_uc010lhl.1_Silent_p.L564L|SRRT_uc003uxa.2_Silent_p.L564L|SRRT_uc003uwz.2_Silent_p.L565L	NM_015908	NP_056992	Q9BXP5	SRRT_HUMAN	arsenate resistance protein 2 isoform a	565					cell proliferation|primary miRNA processing|response to arsenic-containing substance	cytoplasm|nucleoplasm	protein binding			ovary(2)	2						CCGACTACCTGATCGAGGAAG	0.577													23	27					0	0	0.014323	0	0
SRRT	51593	broad.mit.edu	37	7	100484465	100484465	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:100484465T>A	uc003uwy.2	+	15	1965	c.1697T>A	c.(1696-1698)ATC>AAC	p.I566N	SRRT_uc010lhl.1_Missense_Mutation_p.I565N|SRRT_uc003uxa.2_Missense_Mutation_p.I565N|SRRT_uc003uwz.2_Missense_Mutation_p.I566N	NM_015908	NP_056992	Q9BXP5	SRRT_HUMAN	arsenate resistance protein 2 isoform a	566					cell proliferation|primary miRNA processing|response to arsenic-containing substance	cytoplasm|nucleoplasm	protein binding			ovary(2)	2						GACTACCTGATCGAGGAAGTA	0.582													25	25					0	0	0.003330	0	0
MUC17	140453	broad.mit.edu	37	7	100676391	100676391	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:100676391C>T	uc003uxp.1	+	3	1747	c.1694C>T	c.(1693-1695)CCT>CTT	p.P565L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	565	Extracellular (Potential).|7.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACCTCAACTCCTAGTGAAGGA	0.498													104	158					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100684532	100684532	+	Missense_Mutation	SNP	G	A	A	rs143002700	byFrequency	TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:100684532G>A	uc003uxp.1	+	3	9888	c.9835G>A	c.(9835-9837)GGA>AGA	p.G3279R	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3279	Extracellular (Potential).|Ser-rich.|53.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TCCTAGTGAAGGAAGCACTCC	0.512													79	185					0	0	0.014410	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117431239	117431239	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:117431239C>T	uc003vjf.2	-	4	2103	c.2011G>A	c.(2011-2013)GTT>ATT	p.V671I		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	671										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		GAGGCACTAACGGGGTTTATG	0.498													25	31					0	0	0.004656	0	0
RNF148	378925	broad.mit.edu	37	7	122342642	122342642	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:122342642C>T	uc003vkk.1	-	1	380	c.163G>A	c.(163-165)GAA>AAA	p.E55K	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron|RNF148_uc010lkr.1_Intron	NM_198085	NP_932351	Q8N7C7	RN148_HUMAN	ring finger protein 148 precursor	55						integral to membrane	zinc ion binding				0						TCTCCTAATTCCGATGTGATC	0.448													5	10					0	0	0.001168	0	0
SVOPL	136306	broad.mit.edu	37	7	138312175	138312175	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:138312175G>A	uc011kqh.1	-	11	1101	c.1101C>T	c.(1099-1101)TTC>TTT	p.F367F	SVOPL_uc003vue.2_Silent_p.F215F	NM_001139456	NP_001132928	Q8N434	SVOPL_HUMAN	SVOP-like isoform 1	367	Helical; (Potential).					integral to membrane	transmembrane transporter activity				0						GTCTTCCCAGGAAATTGATGC	0.403													3	6					0	0	0.000602	0	0
SLC37A3	84255	broad.mit.edu	37	7	140069425	140069425	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:140069425T>C	uc003vvo.2	-	4	422	c.256A>G	c.(256-258)ACA>GCA	p.T86A	SLC37A3_uc003vvp.2_Missense_Mutation_p.T86A|SLC37A3_uc010lnh.2_Missense_Mutation_p.T86A|SLC37A3_uc011kqz.1_RNA|SLC37A3_uc011kra.1_Missense_Mutation_p.T86A|SLC37A3_uc011krb.1_Missense_Mutation_p.T86A	NM_207113	NP_996996	Q8NCC5	SPX3_HUMAN	solute carrier family 37 (glycerol-3-phosphate	86	Helical; (Potential).				carbohydrate transport|transmembrane transport	integral to membrane				ovary(3)	3	Melanoma(164;0.0142)					GTATCCAGTGTGCCGAGGAAA	0.443													24	21					0	0	0.009535	0	0
TRYX3	136541	broad.mit.edu	37	7	141952372	141952372	+	Missense_Mutation	SNP	G	A	A	rs146814209		TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:141952372G>A	uc003vxb.2	-	4	816	c.496C>T	c.(496-498)CGC>TGC	p.R166C	TRYX3_uc003vxc.3_Missense_Mutation_p.R166C	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	166	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					TAGGCATCGCGACACTGAGGC	0.433													15	13					0	0	0.004007	0	0
EPHA1	2041	broad.mit.edu	37	7	143098468	143098468	+	Missense_Mutation	SNP	C	T	T	rs111858878		TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:143098468C>T	uc003wcz.2	-	3	468	c.381G>A	c.(379-381)ATG>ATA	p.M127I		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	127	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				GGTCACTCTCCATGTACAGAA	0.617													74	95					0	0	0.014410	0	0
EZH2	2146	broad.mit.edu	37	7	148508728	148508728	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:148508728A>T	uc003wfd.1	-	16	2087	c.1921T>A	c.(1921-1923)TAC>AAC	p.Y641N	EZH2_uc011kug.1_Missense_Mutation_p.Y590N|EZH2_uc003wfb.1_Missense_Mutation_p.Y646N|EZH2_uc003wfc.1_Missense_Mutation_p.Y602N|EZH2_uc011kuh.1_Missense_Mutation_p.Y632N	NM_004456	NP_004447	Q15910	EZH2_HUMAN	enhancer of zeste 2 isoform a	641	SET.				negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	DNA binding|histone-lysine N-methyltransferase activity|protein binding	p.Y646N(23)|p.Y646H(11)		haematopoietic_and_lymphoid_tissue(180)|skin(2)|large_intestine(1)	183	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00239)			TCTCCACAGTATTCTGAGATG	0.383			Mis		DLBCL								9	12					0	0	0.006214	0	0
ARHGEF10	9639	broad.mit.edu	37	8	1857613	1857613	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr8:1857613C>T	uc003wpr.2	+	18	2298	c.2120C>T	c.(2119-2121)GCC>GTC	p.A707V	ARHGEF10_uc003wpq.1_Missense_Mutation_p.A731V|ARHGEF10_uc003wps.2_Missense_Mutation_p.A669V|ARHGEF10_uc003wpv.2_Missense_Mutation_p.A440V|ARHGEF10_uc010lre.2_Missense_Mutation_p.A387V	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	732					centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		GAGAGCCTGGCCGTGGTTGCT	0.622													29	90					0	0	0.009535	0	0
CSMD1	64478	broad.mit.edu	37	8	3889491	3889491	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr8:3889491G>A	uc011kwk.1	-	4	936	c.546C>T	c.(544-546)ATC>ATT	p.I182I		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	182	Extracellular (Potential).|Sushi 1.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGCAGGTCAGGATGGCGTGGC	0.542													14	42					0	0	0.002450	0	0
FLJ10661	286042	broad.mit.edu	37	8	8095880	8095880	+	RNA	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr8:8095880C>T	uc011kwt.1	+	8		c.1075C>T			FLJ10661_uc010lrq.2_Intron|FLJ10661_uc003wsf.3_Intron	NR_024362				Homo sapiens cDNA FLJ60033 complete cds, highly similar to Protein FAM86A.												0						GCCACATGGCCCCAGGCCCAA	0.617													6	26					0	0	0.003080	0	0
MTMR7	9108	broad.mit.edu	37	8	17161938	17161938	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr8:17161938C>T	uc003wxm.2	-	12	1682	c.1443G>A	c.(1441-1443)CAG>CAA	p.Q481Q	MTMR7_uc003wxn.2_Silent_p.Q260Q|MTMR7_uc011kya.1_Silent_p.Q115Q|MTMR7_uc011kyb.1_Silent_p.Q72Q	NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	481	Myotubularin phosphatase.						protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		TTCCCTGAGTCTGGCTGTGAT	0.428													7	27					0	0	0.008291	0	0
PXDNL	137902	broad.mit.edu	37	8	52320774	52320774	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr8:52320774G>A	uc003xqu.3	-	17	3511	c.3410C>T	c.(3409-3411)TCG>TTG	p.S1137L	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1137					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GGTGGCAGCCGAATCCACGGC	0.522													162	83					0	0	0.014410	0	0
CHD7	55636	broad.mit.edu	37	8	61654288	61654288	+	Silent	SNP	G	C	C			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr8:61654288G>C	uc003xue.2	+	2	774	c.297G>C	c.(295-297)GCG>GCC	p.A99A		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	99					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			ACGGACTCGCGTCTCCGCACT	0.527													29	12					0	0	0.009535	0	0
MIR124-2	406908	broad.mit.edu	37	8	65291803	65291803	+	RNA	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr8:65291803G>A	hsa-mir-124-2|MI0000444	+			c.98G>A			uc003xvd.2_Intron|uc003xve.2_Intron|uc003xvf.2_RNA																	0						GGAGCCTACGGCTGCACTTGA	0.498													8	46					0	0	0.004482	0	0
VPS13B	157680	broad.mit.edu	37	8	100479817	100479817	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr8:100479817C>T	uc003yiv.2	+	24	3732	c.3621C>T	c.(3619-3621)CTC>CTT	p.L1207L	VPS13B_uc003yiw.2_Silent_p.L1207L|VPS13B_uc003yiu.1_Silent_p.L1207L|VPS13B_uc003yix.1_Silent_p.L677L	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1207					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TTGTCTGTCTCCATGTTGACC	0.408													18	25					0	0	0.008871	0	0
DCAF13	25879	broad.mit.edu	37	8	104427557	104427557	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr8:104427557C>T	uc003yln.2	+	1	616	c.339C>T	c.(337-339)TCC>TCT	p.S113S	SLC25A32_uc003yll.2_5'Flank|SLC25A32_uc011lhr.1_5'Flank|DCAF13_uc003ylm.1_5'UTR|DCAF13_uc003ylo.2_5'UTR	NM_015420	NP_056235	Q9NV06	DCA13_HUMAN	WD repeats and SOF1 domain containing	Error:Variant_position_missing_in_Q9NV06_after_alignment					rRNA processing	CUL4 RING ubiquitin ligase complex|nucleolus|ribonucleoprotein complex				breast(1)	1						GCCGCCGCTCCGCGAGTCACG	0.637													34	88					0	0	0.003755	0	0
CSMD3	114788	broad.mit.edu	37	8	114185975	114185975	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr8:114185975C>T	uc003ynu.2	-	4	844	c.685G>A	c.(685-687)GAT>AAT	p.D229N	CSMD3_uc003ynt.2_Missense_Mutation_p.D189N|CSMD3_uc011lhx.1_Missense_Mutation_p.D229N|CSMD3_uc010mcx.1_Missense_Mutation_p.D229N	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	229	Extracellular (Potential).|Sushi 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ACAGGAAAATCCCACGAAGCT	0.428										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			14	28					0	0	0.006122	0	0
SAMD12	401474	broad.mit.edu	37	8	119391893	119391893	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr8:119391893C>T	uc003yom.2	-	4	498	c.369G>A	c.(367-369)GGG>GGA	p.G123G	SAMD12_uc010mda.1_Silent_p.G123G|SAMD12_uc010mdb.1_RNA	NM_207506	NP_997389	Q8N8I0	SAM12_HUMAN	sterile alpha motif domain containing 12 isoform	123	SAM.									ovary(1)	1	all_cancers(13;3.91e-25)|Lung NSC(37;1.13e-07)|Ovarian(258;0.0249)		STAD - Stomach adenocarcinoma(47;0.00391)			CCTGGGCAATCCCCATTCGCT	0.478													11	32					0	0	0.001855	0	0
COL14A1	7373	broad.mit.edu	37	8	121381693	121381693	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr8:121381693C>T	uc003yox.2	+	47	5545	c.5280C>T	c.(5278-5280)GAC>GAT	p.D1760D	COL14A1_uc003yoz.2_Silent_p.D725D	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1760	Triple-helical region 2 (COL1).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GATATTGTGACCCCTCATCAT	0.552													14	41					0	0	0.001855	0	0
MTBP	27085	broad.mit.edu	37	8	121502729	121502730	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr8:121502729_121502730CC>TT	uc003ypc.1	+	13	1411_1412	c.1366_1367CC>TT	c.(1366-1368)CCA>TTA	p.P456L		NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	456					cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			ATTATCACTTCCACATTTTTCT	0.347													7	7					0	0	0.004672	0	0
FER1L6	654463	broad.mit.edu	37	8	125107223	125107223	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr8:125107223C>T	uc003yqw.2	+	35	4845	c.4639C>T	c.(4639-4641)CCT>TCT	p.P1547S	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1547	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			TAGGCTGGTTCCTGAACACAT	0.483													32	17					0	0	0.004289	0	0
FAM135B	51059	broad.mit.edu	37	8	139164878	139164878	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr8:139164878C>T	uc003yuy.2	-	13	2011	c.1840G>A	c.(1840-1842)GAA>AAA	p.E614K	FAM135B_uc003yux.2_Missense_Mutation_p.E515K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.E176K|FAM135B_uc003yvb.2_Missense_Mutation_p.E176K	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	614										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GTACTTAATTCATGGAGAGTT	0.453										HNSCC(54;0.14)			27	88					0	0	0.005443	0	0
CYP11B2	1585	broad.mit.edu	37	8	143993405	143993405	+	Silent	SNP	C	T	T	rs141179680		TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr8:143993405C>T	uc003yxk.1	-	9	1506	c.1503G>A	c.(1501-1503)GCG>GCA	p.A501A		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	501					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	ACTAGTTAATCGCTCTGAAAG	0.557									Familial_Hyperaldosteronism_type_I				37	100					0	0	0.008740	0	0
DMRT3	58524	broad.mit.edu	37	9	990589	990589	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:990589C>T	uc003zgw.1	+	2	1041	c.1003C>T	c.(1003-1005)CGA>TGA	p.R335*		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	335					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		ATCAGCCTTTCGAGTCCCAGA	0.577													26	17					0	0	0.007291	0	0
GLIS3	169792	broad.mit.edu	37	9	4118848	4118848	+	Silent	SNP	C	T	T	rs143229220	byFrequency	TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:4118848C>T	uc003zhw.1	-	3	359	c.165G>A	c.(163-165)ACG>ACA	p.T55T	GLIS3_uc003zhx.1_Silent_p.T210T|GLIS3_uc003zic.1_Silent_p.T210T|GLIS3_uc003zie.1_Silent_p.T210T|GLIS3_uc010mhh.1_Silent_p.T85T|GLIS3_uc003zid.1_5'UTR|GLIS3_uc010mhi.1_Silent_p.T17T|GLIS3_uc003zif.1_5'UTR|GLIS3_uc003zig.1_Silent_p.T54T|GLIS3_uc003zih.1_5'UTR|GLIS3_uc003zhy.1_5'UTR|GLIS3_uc003zhz.1_5'UTR|GLIS3_uc003zib.1_Silent_p.T54T|GLIS3_uc010mhg.1_5'UTR	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	55	Ser-rich.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		GACTCAAGGTCGTGGACGCCA	0.512													11	14					0	0	0.013537	0	0
FREM1	158326	broad.mit.edu	37	9	14756441	14756441	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:14756441T>G	uc003zlm.2	-	29	5928	c.5338A>C	c.(5338-5340)AAC>CAC	p.N1780H	FREM1_uc010mic.2_Intron|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Missense_Mutation_p.N316H	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1780	Calx-beta.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		GACACTTGGTTGACCTTAGGA	0.353													3	2					0	0	0.004672	0	0
TAF1L	138474	broad.mit.edu	37	9	32631964	32631964	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:32631964C>T	uc003zrg.1	-	1	3704	c.3614G>A	c.(3613-3615)CGA>CAA	p.R1205Q	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1205					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AGCTGGTTTTCGGACTGTCTC	0.423													17	34					0	0	0.010504	0	0
AQP3	360	broad.mit.edu	37	9	33442346	33442346	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:33442346G>A	uc003zsx.2	-	5	725	c.663C>T	c.(661-663)GGC>GGT	p.G221G	SUGT1P1_uc010mjq.1_Intron|AQP3_uc003zsv.1_3'UTR|AQP3_uc003zsw.2_Silent_p.G65G|AQP3_uc010mju.2_Intron	NM_004925	NP_004916	Q92482	AQP3_HUMAN	aquaporin 3	221	Extracellular (Potential).				excretion|odontogenesis|positive regulation of immune system process|regulation of keratinocyte differentiation|response to calcium ion|response to retinoic acid|response to vitamin D	basolateral plasma membrane|cell-cell junction|cytoplasm	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.0899)		AAAGGCGGGGGCCAAAGTCCC	0.662													14	20					0	0	0.002450	0	0
C9orf128	392307	broad.mit.edu	37	9	35825669	35825669	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:35825669C>T	uc010mlc.2	-	2	775	c.490G>A	c.(490-492)GTC>ATC	p.V164I	C9orf128_uc003zyj.2_RNA|C9orf128_uc011lpg.1_Missense_Mutation_p.V164I	NM_001012446	NP_001012448	A6H8Z2	CI128_HUMAN	hypothetical protein LOC392307	164											0	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			TCCACTTGGACCTGGGATGAA	0.522											OREG0019180	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	65	64					0	0	0.014410	0	0
LOC442421	442421	broad.mit.edu	37	9	66499897	66499897	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:66499897T>C	uc004aee.1	+	1	707	c.707T>C	c.(706-708)ATG>ACG	p.M236T	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						GCCATGTACATGAAGGGCGGG	0.552													6	10					0	0	0.008291	0	0
LOC442421	442421	broad.mit.edu	37	9	66499904	66499904	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:66499904C>T	uc004aee.1	+	1	714	c.714C>T	c.(712-714)GGC>GGT	p.G238G	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						ACATGAAGGGCGGGTAACCTG	0.542													4	10					0	0	0.003080	0	0
LOC442421	442421	broad.mit.edu	37	9	66500921	66500921	+	RNA	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:66500921G>A	uc004aed.1	+	3		c.1014G>A								Homo sapiens similar to prostaglandin E receptor 4, subtype EP4; PGE receptor, EP4 subtype; prostaglandin E2 receptor, mRNA (cDNA clone IMAGE:5288780).												0						CACCTATGCTGGCAGCAAGAG	0.607													4	11					0	0	0.001984	0	0
LOC442421	442421	broad.mit.edu	37	9	66500936	66500936	+	RNA	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:66500936G>A	uc004aed.1	+	3		c.1029G>A								Homo sapiens similar to prostaglandin E receptor 4, subtype EP4; PGE receptor, EP4 subtype; prostaglandin E2 receptor, mRNA (cDNA clone IMAGE:5288780).												0						CAAGAGCGCCGCGGAGCGCCT	0.607													4	10					0	0	0.001984	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71606060	71606060	+	Missense_Mutation	SNP	G	A	A	rs138893749		TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:71606060G>A	uc004agu.2	+	15	1812	c.1507G>A	c.(1507-1509)GGG>AGG	p.G503R	PIP5K1B_uc011lrq.1_Intron|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	503						endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		TTCCAGCAAAGGGTTACCTTC	0.478													23	20					0	0	0.002780	0	0
MAMDC2	256691	broad.mit.edu	37	9	72755146	72755146	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:72755146G>A	uc004ahm.2	+	8	1697	c.1080G>A	c.(1078-1080)TGG>TGA	p.W360*	MAMDC2_uc004ahn.2_RNA	NM_153267	NP_694999	Q7Z304	MAMC2_HUMAN	MAM domain containing 2 precursor	360	MAM 3.					endoplasmic reticulum|membrane				central_nervous_system(1)|pancreas(1)	2						GTCCAGGTTGGACCCGAGTGA	0.463													13	15					0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	9	78965799	78965799	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:78965799G>A	uc004akc.1	+	8	1417	c.1197G>A	c.(1195-1197)GGG>GGA	p.G399G						Homo sapiens cDNA FLJ16215 fis, clone CTONG2025610, moderately similar to PC6B.																		TCATGGGAGGGATCTGCACCT	0.488													14	46					0	0	0.004990	0	0
PRUNE2	158471	broad.mit.edu	37	9	79321264	79321264	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:79321264G>A	uc010mpk.2	-	8	6050	c.5926C>T	c.(5926-5928)CAC>TAC	p.H1976Y	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1976					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TCCTCTGCGTGAGTAAAGGCT	0.453													9	25					0	0	0.008291	0	0
PRUNE2	158471	broad.mit.edu	37	9	79323983	79323983	+	Silent	SNP	A	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:79323983A>G	uc010mpk.2	-	8	3331	c.3207T>C	c.(3205-3207)GAT>GAC	p.D1069D		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1069					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CCCCGACGTCATCCTCCATGG	0.453													27	23					0	0	0.004656	0	0
VPS13A	23230	broad.mit.edu	37	9	79984267	79984267	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:79984267C>T	uc004akr.2	+	63	8866	c.8606C>T	c.(8605-8607)CCA>CTA	p.P2869L	VPS13A_uc004akp.3_Missense_Mutation_p.P2869L|VPS13A_uc004akq.3_Missense_Mutation_p.P2869L|VPS13A_uc004aks.2_Missense_Mutation_p.P2830L	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	2869	TPR 9.				Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TTGGGAAATCCATTTGGCTTA	0.294													7	20					0	0	0.003080	0	0
FRMD3	257019	broad.mit.edu	37	9	85958140	85958140	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:85958140G>A	uc004ams.1	-	5	639	c.437C>T	c.(436-438)TCT>TTT	p.S146F	FRMD3_uc004amr.1_Missense_Mutation_p.S132F	NM_174938	NP_777598	A2A2Y4	FRMD3_HUMAN	FERM domain containing 3	146	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2						GGCAGCATCAGAAAAGGAGCA	0.478													14	22					0	0	0.004007	0	0
OGN	4969	broad.mit.edu	37	9	95165623	95165623	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:95165623T>C	uc004asa.2	-	2	302	c.67A>G	c.(67-69)ACC>GCC	p.T23A	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|OGN_uc004asb.2_Missense_Mutation_p.T23A|OGN_uc011ltx.1_Missense_Mutation_p.T41A	NM_014057	NP_054776	P20774	MIME_HUMAN	osteoglycin preproprotein	23						extracellular space|proteinaceous extracellular matrix	growth factor activity				0						TCCTGCTGGGTTGGTGGTGCT	0.383													4	19					0	0	0.009096	0	0
OR13C9	286362	broad.mit.edu	37	9	107380132	107380132	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:107380132C>T	uc011lvr.1	-	1	354	c.354G>A	c.(352-354)ATG>ATA	p.M118I		NM_001001956	NP_001001956	Q8NGT0	O13C9_HUMAN	olfactory receptor, family 13, subfamily C,	118	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGTCAAAGGCCATCATGCCCA	0.502													12	5					0	0	0.002450	0	0
SLC44A1	23446	broad.mit.edu	37	9	108123565	108123565	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:108123565A>G	uc004bcn.2	+	8	1075	c.854A>G	c.(853-855)AAT>AGT	p.N285S	SLC44A1_uc010mtk.1_Missense_Mutation_p.N285S|SLC44A1_uc004bco.1_Missense_Mutation_p.N77S	NM_080546	NP_536856	Q8WWI5	CTL1_HUMAN	CDW92 antigen	285	Mitochondrial intermembrane (Potential).					integral to membrane|mitochondrial outer membrane|plasma membrane	choline transmembrane transporter activity			breast(3)|ovary(1)	4					Choline(DB00122)	GCTGAAGACAATCTTCGGGCC	0.463													23	43					0	0	0.002780	0	0
SVEP1	79987	broad.mit.edu	37	9	113170312	113170312	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:113170312G>A	uc010mtz.2	-	38	7905	c.7568C>T	c.(7567-7569)TCT>TTT	p.S2523F	SVEP1_uc010mty.2_Missense_Mutation_p.S449F	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2523	Sushi 19.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TCGGTTGCAAGAGTAGGTAAC	0.483													13	5					0	0	0.013537	0	0
ASS1	445	broad.mit.edu	37	9	133370310	133370310	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:133370310G>A	uc004bzm.2	+	14	1383	c.1027G>A	c.(1027-1029)GAG>AAG	p.E343K	ASS1_uc004bzn.2_Missense_Mutation_p.E343K|ASS1_uc010mza.2_Missense_Mutation_p.E419K|ASS1_uc004bzo.2_Missense_Mutation_p.E324K|ASS1_uc010mzb.2_Missense_Mutation_p.E381K|ASS1_uc004bzp.2_Missense_Mutation_p.E343K|ASS1_uc010mzc.2_Missense_Mutation_p.E343K	NM_000050	NP_000041	P00966	ASSY_HUMAN	argininosuccinate synthetase 1	343					arginine biosynthetic process|urea cycle	cytosol	argininosuccinate synthase activity|ATP binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000514)	Adenosine triphosphate(DB00171)|L-Arginine(DB00125)|L-Aspartic Acid(DB00128)|L-Citrulline(DB00155)	CAAGTCCCAGGAGCGAGTGGA	0.587													25	17					0	0	0.005443	0	0
CEL	1056	broad.mit.edu	37	9	135940078	135940078	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:135940078C>T	uc010naa.1	+	3	294	c.278C>T	c.(277-279)ACC>ATC	p.T93I		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	90	Heparin-binding.				cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		GCCACCATCACCCAGGACAGC	0.617													46	154					0	0	0.014410	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136298631	136298631	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:136298631G>A	uc004cdv.3	+	10	1670	c.1226G>A	c.(1225-1227)CGG>CAG	p.R409Q	ADAMTS13_uc004cdp.3_Intron|ADAMTS13_uc004cdt.1_Missense_Mutation_p.R409Q|ADAMTS13_uc004cdu.1_Missense_Mutation_p.R378Q|ADAMTS13_uc004cdw.3_Missense_Mutation_p.R409Q|ADAMTS13_uc004cdx.3_Missense_Mutation_p.R378Q|ADAMTS13_uc004cdy.1_RNA|ADAMTS13_uc004cdz.3_Missense_Mutation_p.R79Q|ADAMTS13_uc004cds.1_Intron|ADAMTS13_uc004cdr.1_RNA	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	409	TSP type-1 1.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		ACCAGGAGGCGGCAGTGCAAC	0.627													4	28					0	0	0.000602	0	0
VAV2	7410	broad.mit.edu	37	9	136672436	136672436	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:136672436G>A	uc004ces.2	-	8	725	c.679C>T	c.(679-681)CCC>TCC	p.P227S	VAV2_uc004cer.2_Missense_Mutation_p.P222S	NM_001134398	NP_001127870	P52735	VAV2_HUMAN	vav 2 guanine nucleotide exchange factor isoform	227	DH.				angiogenesis|apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	metal ion binding|Rho guanyl-nucleotide exchange factor activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(145;3.9e-07)|Epithelial(140;2.07e-06)|all cancers(34;9.39e-06)		AGCCGCAGGGGGCTCATGTAG	0.652													29	22					0	0	0.003755	0	0
FCN1	2219	broad.mit.edu	37	9	137801662	137801662	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr9:137801662C>T	uc004cfi.2	-	9	1055	c.963G>A	c.(961-963)ATG>ATA	p.M321I		NM_002003	NP_001994	O00602	FCN1_HUMAN	ficolin 1 precursor	321	Fibrinogen C-terminal.				opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|receptor binding|sugar binding			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.46e-08)|Epithelial(140;6.01e-08)|all cancers(34;3.69e-07)		GCCGCACCTTCATCTCTGACA	0.577													24	51					0	0	0.004656	0	0
NLGN4X	57502	broad.mit.edu	37	X	5811554	5811554	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:5811554C>T	uc010ndh.2	-	6	2256	c.1755G>A	c.(1753-1755)ACG>ACA	p.T585T	NLGN4X_uc004crp.2_Silent_p.T605T|NLGN4X_uc004crq.2_Silent_p.T585T|NLGN4X_uc010ndi.2_Silent_p.T622T|NLGN4X_uc004crr.2_Silent_p.T585T|NLGN4X_uc010ndj.2_Silent_p.T585T	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	585	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						AAGCCACTTTCGTTGCCCGGT	0.463													35	13					0	0	0.007835	0	0
FRMPD4	9758	broad.mit.edu	37	X	12704292	12704292	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:12704292C>T	uc004cuz.1	+	7	1156	c.650C>T	c.(649-651)TCA>TTA	p.S217L	FRMPD4_uc011mij.1_Missense_Mutation_p.S209L	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	217	FERM.				positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						CAGACCAAATCATTTCGTTTT	0.413													12	16					0	0	0.002450	0	0
TLR7	51284	broad.mit.edu	37	X	12906165	12906165	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:12906165C>T	uc004cvc.2	+	3	2677	c.2538C>T	c.(2536-2538)TCC>TCT	p.S846S		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	846	Helical; (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	TCTCACTTTCCATATCTGTAT	0.448													23	40					0	0	0.004656	0	0
PTCHD1	139411	broad.mit.edu	37	X	23398304	23398304	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:23398304G>A	uc004dal.3	+	2	956	c.948G>A	c.(946-948)GGG>GGA	p.G316G	PTCHD1_uc010nfu.1_Silent_p.G316G	NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	316	Helical; (Potential).|SSD.				cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						CTGCAGCCGGGATCATCAATC	0.522													30	52					0	0	0.009535	0	0
CXorf22	170063	broad.mit.edu	37	X	35971783	35971783	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:35971783C>T	uc004ddj.2	+	7	1180	c.1121C>T	c.(1120-1122)TCC>TTC	p.S374F	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	374										large_intestine(1)|lung(1)|ovary(1)	3						AGATTTGAGTCCGTAGGAAGT	0.323													12	8					0	0	0.001855	0	0
HUWE1	10075	broad.mit.edu	37	X	53612009	53612009	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:53612009C>T	uc004dsp.2	-	40	5366	c.4964G>A	c.(4963-4965)CGA>CAA	p.R1655Q	HUWE1_uc004dsn.2_Missense_Mutation_p.R480Q	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	1655	WWE.				base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						GTATCTTCTTCGGCCTGCAGT	0.378													40	54					0	0	0.011902	0	0
FAM123B	139285	broad.mit.edu	37	X	63410535	63410535	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:63410535G>A	uc004dvo.2	-	2	2905	c.2632C>T	c.(2632-2634)CTG>TTG	p.L878L		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	878					Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						CGAGGGTGCAGGCCAGGCAGT	0.567													16	31					0	0	0.003163	0	0
MSN	4478	broad.mit.edu	37	X	64955230	64955230	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:64955230C>T	uc004dwf.2	+	8	1095	c.897C>T	c.(895-897)ACC>ACT	p.T299T		NM_002444	NP_002435	P26038	MOES_HUMAN	moesin	299					leukocyte cell-cell adhesion|leukocyte migration|membrane to membrane docking	apical plasma membrane|cytoskeleton|extrinsic to membrane|microvillus membrane|nucleolus	cell adhesion molecule binding|receptor binding|structural constituent of cytoskeleton		MSN/ALK(6)	haematopoietic_and_lymphoid_tissue(6)|ovary(3)|lung(1)	10						AGCCTGATACCATTGAGGTGC	0.587			T	ALK	ALCL								3	9					0	0	0.004672	0	0
CXCR3	2833	broad.mit.edu	37	X	70836447	70836447	+	Missense_Mutation	SNP	C	T	T	rs139226823		TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:70836447C>T	uc004eaf.2	-	2	943	c.875G>A	c.(874-876)CGA>CAA	p.R292Q	BCYRN1_uc011mpt.1_Intron|CXCR3_uc011mpx.1_Missense_Mutation_p.R339Q	NM_001504	NP_001495	P49682	CXCR3_HUMAN	chemokine (C-X-C motif) receptor 3 isoform A	292	Extracellular (Potential).		R -> Q.		cell adhesion|cellular component movement|chemotaxis|elevation of cytosolic calcium ion concentration	cytoplasm|integral to plasma membrane	C-X-C chemokine receptor activity			ovary(2)|central_nervous_system(1)	3	Renal(35;0.156)					CCTGCTTTCTCGGCCACAGTT	0.617													26	38					0	0	0.009535	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960249	73960249	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:73960249G>A	uc004eby.2	-	3	4760	c.4143C>T	c.(4141-4143)ATC>ATT	p.I1381I		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1381					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						ACCCACTGTTGATCTTTTTCT	0.443													21	23					0	0	0.012319	0	0
MAGEE2	139599	broad.mit.edu	37	X	75004042	75004042	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:75004042G>T	uc004ecj.1	-	1	1030	c.845C>A	c.(844-846)CCA>CAA	p.P282Q		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	282	MAGE 1.									ovary(1)|skin(1)	2						ATATTCTTCTGGCCAGCTCCA	0.478													25	25					3.73988e-18	4.05002e-18	0.006320	1	0
BTK	695	broad.mit.edu	37	X	100608220	100608220	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:100608220C>T	uc004ehg.2	-	18	2063	c.1870G>A	c.(1870-1872)GAG>AAG	p.E624K	BTK_uc004ehf.2_Missense_Mutation_p.E124K|BTK_uc010nnh.2_RNA|BTK_uc010nni.2_Intron|BTK_uc004ehe.2_RNA|BTK_uc010nnj.2_RNA|BTK_uc010nnk.2_RNA|BTK_uc010nnl.2_Missense_Mutation_p.E100K|BTK_uc010nnm.2_Missense_Mutation_p.E194K|BTK_uc010nnn.2_Missense_Mutation_p.E448K|BTK_uc010nno.2_Missense_Mutation_p.E658K	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	624	Protein kinase.				calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding			lung(3)|central_nervous_system(2)|ovary(1)	6						TATACCTTCTCTGAAGCCAGA	0.438									Agammaglobulinemia_X-linked				75	95					0	0	0.014410	0	0
TCEAL4	79921	broad.mit.edu	37	X	102842186	102842186	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:102842186C>T	uc004ekl.2	+	3	876	c.583C>T	c.(583-585)CCA>TCA	p.P195S	TCEAL4_uc004ekn.2_Missense_Mutation_p.P195S|TCEAL4_uc004ekm.2_Missense_Mutation_p.P195S|TCEAL4_uc004eko.2_Missense_Mutation_p.P195S	NM_024863	NP_079139	Q96EI5	TCAL4_HUMAN	transcription elongation factor A (SII)-like 4	195					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						CCCTAGAGGTCCAAGGGAATT	0.493													61	75					0	0	0.014410	0	0
THOC2	57187	broad.mit.edu	37	X	122747910	122747910	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:122747910C>T	uc004etu.2	-	34	4474	c.4442G>A	c.(4441-4443)CGG>CAG	p.R1481Q	THOC2_uc010nqt.1_RNA|THOC2_uc004etw.1_Missense_Mutation_p.R302Q	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	1481	Lys-rich.|Potential.				intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						AACCCTTTTCCGCTCTTTCCT	0.348													4	15					0	0	0.000602	0	0
BCORL1	63035	broad.mit.edu	37	X	129146564	129146564	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:129146564C>T	uc004evb.1	+	3	211	c.97C>T	c.(97-99)CTT>TTT	p.L33F	BCORL1_uc010nrd.1_5'Flank	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	33					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						AAGAGCACCTCTTTCTGATGA	0.527													59	96					0	0	0.014410	0	0
GPC3	2719	broad.mit.edu	37	X	132670265	132670265	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:132670265G>A	uc004exe.1	-	8	1820	c.1630C>T	c.(1630-1632)CCG>TCG	p.P544S	GPC3_uc004exd.1_Missense_Mutation_p.P416S|GPC3_uc010nrn.1_Missense_Mutation_p.P567S|GPC3_uc011mvh.1_Missense_Mutation_p.P528S|GPC3_uc010nro.1_Missense_Mutation_p.P490S	NM_004484	NP_004475	P51654	GPC3_HUMAN	glypican 3 isoform 2 precursor	544						extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding|peptidyl-dipeptidase inhibitor activity			lung(2)|prostate(1)|breast(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					TTGTCCTTCGGAGTTGCCTGC	0.493			T|D|Mis|N|F|S			Wilms tumour			Simpson-Golabi-Behmel_syndrome				20	24					0	0	0.012319	0	0
GPR112	139378	broad.mit.edu	37	X	135427542	135427542	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:135427542C>T	uc004ezu.1	+	6	1968	c.1677C>T	c.(1675-1677)TTC>TTT	p.F559F	GPR112_uc010nsb.1_Silent_p.F354F|GPR112_uc010nsc.1_Silent_p.F326F	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	559	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CCTTTTCTTTCTTAACATCCT	0.403													5	6					0	0	0.001984	0	0
GPR112	139378	broad.mit.edu	37	X	135428482	135428482	+	Missense_Mutation	SNP	G	A	A	rs143735478		TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:135428482G>A	uc004ezu.1	+	6	2908	c.2617G>A	c.(2617-2619)GAA>AAA	p.E873K	GPR112_uc010nsb.1_Missense_Mutation_p.E668K|GPR112_uc010nsc.1_Missense_Mutation_p.E640K	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	873	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					AGTGACAGACGAATCAGCACA	0.403													21	15					0	0	0.008871	0	0
SOX3	6658	broad.mit.edu	37	X	139586840	139586840	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:139586840C>G	uc004fbd.1	-	1	386	c.386G>C	c.(385-387)GGA>GCA	p.G129A		NM_005634	NP_005625	P41225	SOX3_HUMAN	SRY (sex determining region Y)-box 3	129	Poly-Gly.				face development|hypothalamus development|negative regulation of neuron differentiation|pituitary gland development|regulation of transcription, DNA-dependent|sensory organ development|sex determination|transcription, DNA-dependent	nucleus	DNA binding			pancreas(1)	1	Acute lymphoblastic leukemia(192;7.65e-05)					CCCGCCACCTCCGCTCGCACC	0.721													4	29					0	0	0.009096	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795479	142795479	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:142795479G>A	uc004fbz.2	-	2	953	c.199C>T	c.(199-201)CAA>TAA	p.Q67*		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	67										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TTCTCCAGTTGATTTGAATTT	0.438													61	77					0	0	0.014410	0	0
MTM1	4534	broad.mit.edu	37	X	149831957	149831957	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:149831957G>A	uc004fef.3	+	14	1595	c.1519G>A	c.(1519-1521)GAA>AAA	p.E507K	MTM1_uc011mxx.1_RNA|MTM1_uc011mxy.1_Missense_Mutation_p.E470K|MTM1_uc011mxz.1_Missense_Mutation_p.E392K|MTM1_uc010nte.2_Missense_Mutation_p.E375K	NM_000252	NP_000243	Q13496	MTM1_HUMAN	myotubularin	507	Myotubularin phosphatase.				endosome to lysosome transport|intermediate filament organization|mitochondrion distribution|mitochondrion morphogenesis|phosphatidylinositol dephosphorylation|protein transport|regulation of vacuole organization	filopodium|late endosome|plasma membrane|ruffle	intermediate filament binding|phosphatidylinositol binding|phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CAGTAATAAAGAAAAATTCAA	0.363													8	17					0	0	0.004482	0	0
AVPR2	554	broad.mit.edu	37	X	153170623	153170623	+	Silent	SNP	C	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:153170623C>T	uc004fjh.3	+	1	95	c.24C>T	c.(22-24)TCC>TCT	p.S8S	AVPR2_uc004fjg.3_5'UTR|AVPR2_uc004fji.2_Silent_p.S8S	NM_000054	NP_000045	P30518	V2R_HUMAN	arginine vasopressin receptor 2 isoform 1	8	Extracellular (Potential).				activation of adenylate cyclase activity|excretion|G-protein signaling, coupled to cAMP nucleotide second messenger|hemostasis|positive regulation of gene expression|transmembrane transport|water transport	endoplasmic reticulum|endosome|Golgi apparatus|integral to plasma membrane	vasopressin receptor activity			breast(1)	1	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				Conivaptan(DB00872)|Terlipressin(DB02638)|Vasopressin(DB00067)	CCACCACTTCCGGTAAGGCTT	0.597													41	71					0	0	0.009718	0	0
FLNA	2316	broad.mit.edu	37	X	153595841	153595841	+	Silent	SNP	G	A	A			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:153595841G>A	uc004fkk.2	-	5	1041	c.792C>T	c.(790-792)TTC>TTT	p.F264F	FLNA_uc010nuu.1_Silent_p.F264F	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	264	CH 2.|Actin-binding.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TGGCCTTGGGGAACTGGGACA	0.627													45	66					0	0	0.014410	0	0
MST1P9	11223	broad.mit.edu	37	1	17085590	17085595	+	In_Frame_Del	DEL	GCGCTG	-	-			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr1:17085590_17085595delGCGCTG	uc010ock.1	-	9	1126_1131	c.1126_1131delCAGCGC	c.(1126-1131)CAGCGCdel	p.QR376del	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						CAGCGGACCAGCGCTGGCACTGGACA	0.704													8	138	---	---	---	---					
PPL	5493	broad.mit.edu	37	16	4943544	4943544	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr16:4943544delC	uc002cyd.1	-	13	1580	c.1490delG	c.(1489-1491)GGAfs	p.G497fs		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	497					keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						GCACCCACCTCCGGGATTCTC	0.687													6	13	---	---	---	---					
POM121	9883	broad.mit.edu	37	7	72413723	72413724	+	In_Frame_Ins	INS	-	CTC	CTC	rs148686669	byFrequency	TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chr7:72413723_72413724insCTC	uc003twk.2	+	11	3191_3192	c.3191_3192insCTC	c.(3190-3192)TTC>TTCTCC	p.1064_1065insS	POM121_uc003twj.2_In_Frame_Ins_p.799_800insS|POM121_uc010lam.1_In_Frame_Ins_p.799_800insS	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	1064_1065	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				ACTGCTGTCTTCTTCGGTGCAG	0.663													9	66	---	---	---	---					
ZFX	7543	broad.mit.edu	37	X	24225559	24225560	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:24225559_24225560insT	uc004dbf.2	+	5	1021_1022	c.763_764insT	c.(763-765)ATTfs	p.I255fs	ZFX_uc004dbd.1_Frame_Shift_Ins_p.I255fs|ZFX_uc010nfx.1_Frame_Shift_Ins_p.I26fs|ZFX_uc004dbe.2_Frame_Shift_Ins_p.I255fs|ZFX_uc011mjv.1_Frame_Shift_Ins_p.I294fs|ZFX_uc010nfy.1_Intron|ZFX_uc010nfz.2_5'Flank	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	255					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						CAAGGTGTACATTTTTAAAGCT	0.406													31	44	---	---	---	---					
NKAP	79576	broad.mit.edu	37	X	119077457	119077459	+	In_Frame_Del	DEL	GCG	-	-			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:119077457_119077459delGCG	uc004esh.2	-	1	277_279	c.110_112delCGC	c.(109-114)CCGCGG>CGG	p.P37del		NM_024528	NP_078804	Q8N5F7	NKAP_HUMAN	NFKB activating protein	37	Ser-rich.				negative regulation of transcription, DNA-dependent|Notch signaling pathway|positive regulation of alpha-beta T cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|protein binding			ovary(2)	2						CGGCGGCCCCGCGGGGAGCGGGC	0.685													17	28	---	---	---	---					
CNGA2	1260	broad.mit.edu	37	X	150911948	150911948	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BF-A1PV-01A-11D-A19A-08	TCGA-BF-A1PV-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0db1b3b6-b61c-4718-9cbf-65550d399bc7	792d1c6e-02b2-442b-a36e-d5a4afa5a6aa	g.chrX:150911948delA	uc004fey.1	+	7	1197	c.973delA	c.(973-975)ATCfs	p.I325fs		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	325	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TAGGGAATACATCTATTGCCT	0.478													10	150	---	---	---	---					
