Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P9	11223	broad.mit.edu	37	1	17085522	17085522	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:17085522G>T	uc010ock.1	-	10	1169	c.1169C>A	c.(1168-1170)ACC>AAC	p.T390N	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						CCGCCCCAGGGTTAGGGCCCT	0.637000													5	46					0.00116845	0.00268111	0.001168	1	0
IGSF21	84966	broad.mit.edu	37	1	18703297	18703297	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:18703297G>A	uc001bau.1	+	8	1488	c.1105G>A	c.(1105-1107)GGA>AGA	p.G369R	IGSF21_uc001bav.1_Missense_Mutation_p.E190K	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	369	Ig-like 2.			E -> G (in Ref. 1; BAC11542).		extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		CCAACAGAACGAAGTCTTCCC	0.657000													11	13					0	0	0.010729	0	0
TAS1R2	80834	broad.mit.edu	37	1	19180943	19180943	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:19180943A>C	uc001bba.1	-	3	1022	c.1021T>G	c.(1021-1023)TGG>GGG	p.W341G		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	341	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	TGTGGGCCCCACTCGCGGAAC	0.647000													11	28					0	0	0.008291	0	0
TRIM62	55223	broad.mit.edu	37	1	33625297	33625297	+	Silent	SNP	C	G	G			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:33625297C>G	uc001bxb.2	-	3	1391	c.753G>C	c.(751-753)CTG>CTC	p.L251L		NM_018207	NP_060677	Q9BVG3	TRI62_HUMAN	tripartite motif-containing 62	251						intracellular	zinc ion binding				0		Myeloproliferative disorder(586;0.0393)				ACCGCTCGGACAGTGAGGCCA	0.682000													6	21					0	0	0.001168	0	0
MACF1	23499	broad.mit.edu	37	1	39549971	39549971	+	Missense_Mutation	SNP	G	A	A	rs78058438		TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:39549971G>A	uc010oir.1	+	2	231	c.68G>A	c.(67-69)GGA>GAA	p.G23E	MACF1_uc010ois.1_Silent_p.R27R			Q9UPN3	MACF1_HUMAN	Homo sapiens mRNA for actin binding protein ABP620, complete cds.	Error:Variant_position_missing_in_Q9UPN3_after_alignment					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GATCTTACAGGAGCGAGCGGT	0.617000													6	23					0	0	0.003080	0	0
C1orf175	374977	broad.mit.edu	37	1	55161093	55161093	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:55161093A>G	uc010ooe.1	+	17	3218	c.2894A>G	c.(2893-2895)TAC>TGC	p.Y965C	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Intron|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.Y483C|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.Y965C|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.Y167C|C1orf175_uc001cxu.2_Missense_Mutation_p.Y111C	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	965	HEAT 1.					integral to membrane	binding				0						CGCATCCTCTACCTGCTCATC	0.662000													3	7					0	0	0.009096	0	0
SGIP1	84251	broad.mit.edu	37	1	67194951	67194951	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:67194951A>T	uc001dcr.2	+	20	1964	c.1747A>T	c.(1747-1749)ATC>TTC	p.I583F	SGIP1_uc010opd.1_Missense_Mutation_p.I183F|SGIP1_uc001dcs.2_Missense_Mutation_p.I183F|SGIP1_uc001dct.2_Missense_Mutation_p.I185F|SGIP1_uc009wat.2_Missense_Mutation_p.I377F|SGIP1_uc001dcu.2_Missense_Mutation_p.I88F	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	583					positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						TGCCAGATGTATCGTTAAGAT	0.423000													9	22					0	0	0.008291	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74507410	74507410	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:74507410C>T	uc001dfy.3	-	7	1397	c.1205G>A	c.(1204-1206)CGG>CAG	p.R402Q	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	402										ovary(2)	2						TTTCATACTCCGCTCCAATCG	0.353000													11	26					0	0	0.010729	0	0
HFM1	164045	broad.mit.edu	37	1	91816303	91816303	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:91816303G>A	uc001doa.3	-	18	2298	c.2198C>T	c.(2197-2199)TCT>TTT	p.S733F	HFM1_uc009wdb.2_Intron|HFM1_uc010osu.1_Missense_Mutation_p.S412F|HFM1_uc010osv.1_Missense_Mutation_p.S417F	NM_001017975	NP_001017975	A2PYH4	HFM1_HUMAN	HFM1 protein	733							ATP binding|ATP-dependent helicase activity|nucleic acid binding				0		all_lung(203;0.00961)|Lung NSC(277;0.0351)		all cancers(265;0.000481)|Epithelial(280;0.00863)|OV - Ovarian serous cystadenocarcinoma(397;0.126)|KIRC - Kidney renal clear cell carcinoma(1967;0.171)		ACCATAATGAGATGGATTTTT	0.348000													9	20					0	0	0.004482	0	0
KCNC4	3749	broad.mit.edu	37	1	110765869	110765869	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:110765869C>T	uc001dzh.2	+	2	1019	c.962C>T	c.(961-963)GCC>GTC	p.A321V	KCNC4_uc001dzf.2_Missense_Mutation_p.A321V|KCNC4_uc009wfr.2_Missense_Mutation_p.A321V|KCNC4_uc001dzg.2_Missense_Mutation_p.A321V|KCNC4_uc001dzi.2_RNA	NM_004978	NP_004969	Q03721	KCNC4_HUMAN	Shaw-related voltage-gated potassium channel	321	Helical; Name=Segment S3; (Potential).				synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3		all_cancers(81;9.88e-06)|all_epithelial(167;3.23e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0238)|all cancers(265;0.0693)|Epithelial(280;0.0748)|Colorectal(144;0.112)|LUSC - Lung squamous cell carcinoma(189;0.135)		GACTTTGTGGCCATCCTGCCC	0.627000													12	33					0	0	0.010729	0	0
DENND2C	163259	broad.mit.edu	37	1	115078781	115078781	+	RNA	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:115078781C>T	uc001eez.2	-	29		c.4862G>A				NM_198459		Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C											skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCCAGCTTCCCAATCGGTGGA	0.507000													10	13					0	0	0.010729	0	0
BCL9	607	broad.mit.edu	37	1	147091450	147091450	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:147091450C>T	uc001epq.2	+	8	2229	c.1489C>T	c.(1489-1491)CTC>TTC	p.L497F	BCL9_uc010ozr.1_Missense_Mutation_p.L423F	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	497	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					GCAGTGTTCCCTCCAGGACAT	0.587000			T	IGH@|IGL@	B-ALL								23	85					0	0	0.003954	0	0
GJA8	2703	broad.mit.edu	37	1	147380868	147380868	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:147380868A>C	uc001epu.1	+	2	849	c.786A>C	c.(784-786)AAA>AAC	p.K262N		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	262	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					CCATCCAGAAAGCCAAGGGCT	0.557000													7	42					0	0	0.001984	0	0
S100A10	6281	broad.mit.edu	37	1	151958577	151958577	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:151958577C>T	uc001ezl.2	-	2	638	c.130G>A	c.(130-132)GAA>AAA	p.E44K		NM_002966	NP_002957	P60903	S10AA_HUMAN	S100 calcium binding protein A10	44					signal transduction		calcium ion binding|receptor binding				0	Melanoma(130;0.0648)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			ACACTTACTTCCAAAAATCCA	0.418000													10	87					0	0	0.010729	0	0
IQGAP3	128239	broad.mit.edu	37	1	156501015	156501015	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:156501015G>A	uc001fpf.2	-	33	4203	c.4128C>T	c.(4126-4128)ATC>ATT	p.I1376I		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	1376					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GGAACTGTATGATATCGGCCA	0.587000													13	63					0	0	0.002450	0	0
CADM3	57863	broad.mit.edu	37	1	159163260	159163260	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:159163260G>A	uc001ftl.2	+	4	572	c.430G>A	c.(430-432)GAA>AAA	p.E144K	CADM3_uc009wsx.1_Missense_Mutation_p.E178K|CADM3_uc009wsy.1_Missense_Mutation_p.E144K|CADM3_uc001ftk.2_Missense_Mutation_p.E178K	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	144	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					TTCATTACGGGAAAAAGACAC	0.537000													19	48					0	0	0.010504	0	0
RGS5	8490	broad.mit.edu	37	1	163117255	163117255	+	Silent	SNP	C	T	T	rs148613695		TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:163117255C>T	uc001gcn.2	-	5	670	c.423G>A	c.(421-423)AAG>AAA	p.K141K	RGS5_uc009wvb.2_RNA	NM_003617	NP_003608	O15539	RGS5_HUMAN	regulator of G-protein signalling 5	141	RGS.				negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity				0			LUSC - Lung squamous cell carcinoma(543;0.187)			CCACCAGGTTCTTCATTGTGA	0.473000													10	41					0	0	0.008291	0	0
TNR	7143	broad.mit.edu	37	1	175334205	175334205	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:175334205T>C	uc001gkp.1	-	10	2609	c.2528A>G	c.(2527-2529)AAC>AGC	p.N843S	TNR_uc009wwu.1_Missense_Mutation_p.N843S	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	843	Fibronectin type-III 6.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AGCCACAAGGTTCACAATATA	0.567000													20	63					0	0	0.008871	0	0
PAPPA2	60676	broad.mit.edu	37	1	176640113	176640113	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:176640113A>G	uc001gkz.2	+	4	3163	c.1999A>G	c.(1999-2001)ATG>GTG	p.M667V	PAPPA2_uc001gky.1_Missense_Mutation_p.M667V|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	667	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TAGGGCATACATGAGTGTGAA	0.483000													44	140					0	0	0.014410	0	0
PLA2G4A	5321	broad.mit.edu	37	1	186901934	186901934	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:186901934C>T	uc001gsc.2	+	8	803	c.598C>T	c.(598-600)CGA>TGA	p.R200*	PLA2G4A_uc010pos.1_Nonsense_Mutation_p.R140*	NM_024420	NP_077734	P47712	PA24A_HUMAN	cytosolic phospholipase A2, group IVA	200	PLA2c.			R->A,H: Abolishes phospholipase activity.|R->K: Reduces phospholipase activity 200- fold.	phospholipid catabolic process|platelet activating factor biosynthetic process|platelet activation	cytosol|endoplasmic reticulum membrane	calcium ion binding|calcium-dependent phospholipid binding|lysophospholipase activity			lung(2)|breast(1)	3					Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Medrysone(DB00253)|Quinacrine(DB01103)	TGGGGGTTTCCGAGCCATGGT	0.458000													31	100					0	0	0.012213	0	0
IGFN1	91156	broad.mit.edu	37	1	201195139	201195139	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:201195139C>T	uc001gwc.2	+	11	2926	c.2154C>T	c.(2152-2154)CTC>CTT	p.L718L	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						GCTTCACCCTCCTGGGCATCC	0.662000													10	34					0	0	0.008291	0	0
KCNK2	3776	broad.mit.edu	37	1	215298016	215298016	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:215298016G>A	uc001hkq.2	+	3	567	c.398G>A	c.(397-399)GGA>GAA	p.G133E	KCNK2_uc001hko.2_Missense_Mutation_p.G129E|KCNK2_uc009xdm.2_RNA|KCNK2_uc001hkp.2_Intron|KCNK2_uc010pua.1_Intron|KCNK2_uc001hkr.3_Missense_Mutation_p.G118E	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	133							outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	ATACCGTTAGGAAACACCTCC	0.383000													28	70					0	0	0.005443	0	0
DISP1	84976	broad.mit.edu	37	1	223116276	223116276	+	Silent	SNP	C	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:223116276C>A	uc001hnu.1	+	2	258	c.111C>A	c.(109-111)GCC>GCA	p.A37A		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	37					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		ACCATGCAGCCCAGCAGCTCA	0.498000													20	437					8.34094e-07	1.94545e-06	0.008871	1	0
DISC1	27185	broad.mit.edu	37	1	231830097	231830098	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:231830097_231830098CC>TT	uc001huz.2	+	2	646_647	c.593_594CC>TT	c.(592-594)ACC>ATT	p.T198I	TSNAX-DISC1_uc010pwe.1_Missense_Mutation_p.T153I|TSNAX-DISC1_uc010pwf.1_Missense_Mutation_p.T153I|TSNAX-DISC1_uc010pwg.1_Missense_Mutation_p.T187I|TSNAX-DISC1_uc010pwh.1_Missense_Mutation_p.T153I|TSNAX-DISC1_uc010pwi.1_Missense_Mutation_p.T153I|TSNAX-DISC1_uc010pwj.1_Missense_Mutation_p.T187I|TSNAX-DISC1_uc010pwk.1_Missense_Mutation_p.T187I|TSNAX-DISC1_uc010pwl.1_RNA|DISC1_uc010pwo.1_Missense_Mutation_p.T198I|DISC1_uc010pwp.1_Missense_Mutation_p.T198I|DISC1_uc010pwq.1_Missense_Mutation_p.T198I|DISC1_uc010pwr.1_Missense_Mutation_p.T198I|DISC1_uc010pws.1_Missense_Mutation_p.T198I|DISC1_uc010pwt.1_Missense_Mutation_p.T198I|DISC1_uc010pwu.1_Intron|DISC1_uc010pwv.1_RNA|DISC1_uc010pww.1_Missense_Mutation_p.T198I|DISC1_uc010pwx.1_RNA|DISC1_uc010pwy.1_RNA|DISC1_uc010pwz.1_RNA|DISC1_uc010pxa.1_RNA|DISC1_uc001huy.2_Missense_Mutation_p.T198I|DISC1_uc010pxb.1_Missense_Mutation_p.T198I|DISC1_uc010pxc.1_Missense_Mutation_p.T198I|DISC1_uc010pxd.1_5'UTR|DISC1_uc010pxe.1_Missense_Mutation_p.T198I|DISC1_uc009xfr.2_Missense_Mutation_p.T153I|DISC1_uc010pxf.1_Missense_Mutation_p.T198I|DISC1_uc010pxg.1_Missense_Mutation_p.T198I|DISC1_uc010pxh.1_Missense_Mutation_p.T198I|DISC1_uc010pxi.1_RNA|DISC1_uc010pxj.1_5'UTR|DISC1_uc010pxk.1_RNA|DISC1_uc010pxl.1_RNA|DISC1_uc010pxm.1_Missense_Mutation_p.T198I|DISC1_uc010pxn.1_5'UTR|DISC1_uc001hva.2_Missense_Mutation_p.T198I|DISC1_uc010pwm.1_Missense_Mutation_p.T198I|DISC1_uc001hux.1_Missense_Mutation_p.T198I|DISC1_uc001hvc.3_Missense_Mutation_p.T198I|DISC1_uc010pwn.1_Missense_Mutation_p.T198I	NM_018662	NP_061132	Q9NRI5	DISC1_HUMAN	disrupted in schizophrenia 1 isoform L	198	Interaction with MAP1A.				microtubule cytoskeleton organization|neuron migration|positive regulation of neuroblast proliferation|positive regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	centrosome|microtubule	protein binding			skin(1)	1		all_cancers(173;0.0208)|Prostate(94;0.0975)				GTCCCCCCAACCCCTCCTGGCT	0.609000													13	38					0	0	0.004672	0	0
TBCE	6905	broad.mit.edu	37	1	235543451	235543451	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:235543451C>T	uc001hwz.1	+	2	210	c.87C>T	c.(85-87)GTC>GTT	p.V29V	TBCE_uc010pxq.1_RNA|TBCE_uc001hxa.1_Silent_p.V29V|TBCE_uc010pxr.1_Silent_p.V29V|TBCE_uc001hxb.1_5'UTR	NM_003193	NP_003184	Q15813	TBCE_HUMAN	beta-tubulin cofactor E	29	CAP-Gly.				'de novo' posttranslational protein folding|post-chaperonin tubulin folding pathway	cytoplasm|microtubule|nucleus|plasma membrane	chaperone binding				0	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00192)|Prostate(94;0.0294)|all_epithelial(177;0.155)|Lung SC(1967;0.238)	OV - Ovarian serous cystadenocarcinoma(106;2.56e-05)			CTGGTGTTGTCCCTCCCGTGG	0.308000													8	15					0	0	0.006214	0	0
OR6F1	343169	broad.mit.edu	37	1	247875287	247875287	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr1:247875287G>A	uc001idj.1	-	1	771	c.771C>T	c.(769-771)TTC>TTT	p.F257F		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GGACGTGAAGGAAAACTGTGG	0.527000													17	42					0	0	0.004007	0	0
LARP4B	23185	broad.mit.edu	37	10	890981	890981	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr10:890981G>A	uc001ifs.1	-	5	486	c.445C>T	c.(445-447)CAA>TAA	p.Q149*		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	149							nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						CTGTCTGGTTGAGACTCATTT	0.378000													11	29					0	0	0.010729	0	0
RBP3	5949	broad.mit.edu	37	10	48389649	48389649	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr10:48389649C>T	uc001jez.2	-	1	1343	c.1229G>A	c.(1228-1230)GGG>GAG	p.G410E		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	410	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	TGGGGCCACCCCTGGTGAGTC	0.657000													10	18					0	0	0.010729	0	0
LRRC18	474354	broad.mit.edu	37	10	50121815	50121815	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr10:50121815C>T	uc001jhd.2	-	1	466	c.386G>A	c.(385-387)GGC>GAC	p.G129D	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Missense_Mutation_p.G129D	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	129	LRR 5.					cytoplasm				ovary(1)|pancreas(1)	2						GTGGTTCAAGCCTAGGTTCAC	0.602000													7	10					0	0	0.001984	0	0
MBL2	4153	broad.mit.edu	37	10	54531368	54531368	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr10:54531368G>A	uc001jjt.2	-	1	93	c.28C>T	c.(28-30)CTT>TTT	p.L10F		NM_000242	NP_000233	P11226	MBL2_HUMAN	soluble mannose-binding lectin precursor	10					acute-phase response|complement activation, classical pathway|complement activation, lectin pathway|defense response to Gram-positive bacterium|negative regulation of growth of symbiont in host|opsonization|response to oxidative stress	collagen|extracellular space	bacterial cell surface binding|calcium-dependent protein binding|eukaryotic cell surface binding|mannose binding|receptor binding			ovary(1)	1						CTCAGGAGAAGGAGAGGGAGT	0.498000													3	8					0	0	0.004672	0	0
COL13A1	1305	broad.mit.edu	37	10	71665557	71665557	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr10:71665557C>T	uc001jpr.1	+	16	1466	c.930C>T	c.(928-930)ATC>ATT	p.I310I	COL13A1_uc001jqj.1_Silent_p.I310I|COL13A1_uc001jps.1_Silent_p.I281I|COL13A1_uc001jpt.1_Silent_p.I269I|COL13A1_uc001jpu.1_Silent_p.I291I|COL13A1_uc001jpv.1_Silent_p.I310I|COL13A1_uc001jpx.1_Silent_p.I288I|COL13A1_uc001jpw.1_Silent_p.I257I|COL13A1_uc001jpy.1_Silent_p.I248I|COL13A1_uc001jpz.1_Silent_p.I253I|COL13A1_uc001jqa.1_Silent_p.I250I|COL13A1_uc001jqc.1_Silent_p.I310I|COL13A1_uc001jqb.1_Silent_p.I259I|COL13A1_uc001jql.2_Silent_p.I310I|COL13A1_uc001jqd.1_Silent_p.I298I|COL13A1_uc001jqe.1_Silent_p.I293I|COL13A1_uc001jqf.1_Silent_p.I291I|COL13A1_uc001jqg.1_Silent_p.I288I|COL13A1_uc001jqh.1_Silent_p.I310I|COL13A1_uc001jqi.1_Silent_p.I310I|COL13A1_uc010qjf.1_Silent_p.I100I|COL13A1_uc001jqk.1_Silent_p.I148I	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	310	Extracellular (Potential).|Triple-helical region 2 (COL2).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	ACCCAGGGATCCAGGGCTACC	0.552000													4	9					0	0	0.000602	0	0
PTEN	5728	broad.mit.edu	37	10	89711876	89711876	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr10:89711876G>A	uc001kfb.2	+	7	1525	c.494G>A	c.(493-495)GGA>GAA	p.G165E		NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	165	Phosphatase tensin-type.		G -> R (in glioblastoma; severely reduced protein phosphatase activity; loss of phosphatase activity towards Ins(1,3,4,5)P4; retains ability to bind phospholipid membranes).|G -> E (in CD).|G -> V (in CD).		activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.G165R(6)|p.R55fs*1(4)|p.?(3)|p.G165fs*9(3)|p.G165E(3)|p.Y27fs*1(2)|p.Y27_N212>Y(2)|p.G165*(1)|p.G165_*404del(1)|p.K163_V166>NKGE(1)|p.G165_K342del(1)|p.G165del(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		GTCCACCAGGGAGTAACTATT	0.368000		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			17	34					0	0	0.006122	0	0
LIPN	643418	broad.mit.edu	37	10	90526048	90526048	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr10:90526048G>A	uc010qmw.1	+	4	448	c.448G>A	c.(448-450)GAT>AAT	p.D150N		NM_001102469	NP_001095939	Q5VXI9	LIPN_HUMAN	lipase-like, ab-hydrolase domain containing 4	150					lipid catabolic process	extracellular region	hydrolase activity				0		Colorectal(252;0.0161)		Colorectal(12;4.83e-05)|COAD - Colon adenocarcinoma(12;6.5e-05)		GGCCAAATATGATCTCCCAGG	0.333000													18	58					0	0	0.010504	0	0
ENTPD1	953	broad.mit.edu	37	10	97604314	97604314	+	Silent	SNP	T	C	C			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr10:97604314T>C	uc001klh.3	+	5	819	c.495T>C	c.(493-495)GGT>GGC	p.G165G	ENTPD1_uc001kle.1_Silent_p.G172G|ENTPD1_uc001kli.3_Silent_p.G172G|uc001klg.1_Intron|ENTPD1_uc010qoj.1_Silent_p.G177G|ENTPD1_uc010qok.1_Silent_p.G57G|ENTPD1_uc010qol.1_Silent_p.G57G|ENTPD1_uc010qom.1_Silent_p.G165G|ENTPD1_uc010qon.1_Silent_p.G27G|ENTPD1_uc009xva.2_Silent_p.G27G|ENTPD1_uc009xuz.2_RNA	NM_001776	NP_001767	P49961	ENTP1_HUMAN	ectonucleoside triphosphate diphosphohydrolase 1	165	Extracellular (Potential).				cell adhesion	integral to plasma membrane	ATP binding			ovary(3)	3		Colorectal(252;0.0821)		Epithelial(162;1.31e-07)|all cancers(201;5.33e-06)		ACTTCCAGGGTGCCAGGATCA	0.498000													35	79					0	0	0.004878	0	0
COL17A1	1308	broad.mit.edu	37	10	105800156	105800156	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr10:105800156G>T	uc001kxr.2	-	40	2883	c.2714C>A	c.(2713-2715)TCC>TAC	p.S905Y		NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	905	Extracellular (Potential).|Triple-helical region.			S -> F (in Ref. 1; AAA35605 and 2; AAB51499).	cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		TGGGGGGCCGGAGAGGAAGGT	0.443000													23	44					6.21321e-17	1.46936e-16	0.002780	1	0
BTBD16	118663	broad.mit.edu	37	10	124043405	124043405	+	Silent	SNP	T	C	C			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr10:124043405T>C	uc001lgc.1	+	4	458	c.207T>C	c.(205-207)AAT>AAC	p.N69N	BTBD16_uc001lgd.1_Silent_p.N68N	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	69										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				TCTTTGAGAATTTCAAGAACA	0.378000													4	10					0	0	0.001168	0	0
IGF2	3481	broad.mit.edu	37	11	2156627	2156627	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:2156627A>G	uc009yde.2	-	2	230	c.127T>C	c.(127-129)TTC>CTC	p.F43L	IGF2_uc001lvf.2_5'Flank|IGF2_uc001lvg.2_Missense_Mutation_p.F43L|IGF2_uc009ydf.2_Missense_Mutation_p.F99L|IGF2_uc001lvh.2_Missense_Mutation_p.F43L|INS-IGF2_uc001lvi.2_RNA|MIR483_hsa-mir-483|MI0002467_5'Flank|INS-IGF2_uc001lvj.1_RNA	NM_001007139	NP_001007140	P01344	IGF2_HUMAN	insulin-like growth factor 2 isoform 1	43	B.				glucose metabolic process|ossification|phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling|positive regulation of activated T cell proliferation|positive regulation of cell division|positive regulation of glycogen (starch) synthase activity|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|skeletal system development	extracellular space	growth factor activity|hormone activity|insulin receptor binding|insulin-like growth factor receptor binding|protein serine/threonine kinase activator activity|receptor activator activity			central_nervous_system(1)	1		all_epithelial(84;5.04e-06)|Breast(177;0.000777)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)|all_lung(207;0.24)	Colorectal(5;0.0179)|COAD - Colon adenocarcinoma(6;0.029)	BRCA - Breast invasive adenocarcinoma(625;1.09e-05)|LUSC - Lung squamous cell carcinoma(625;0.082)|Lung(200;0.153)		CCACAGACGAACTGGAGGGTG	0.632000													6	14					0	0	0.001168	0	0
HBE1	3046	broad.mit.edu	37	11	5291094	5291094	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:5291094C>T	uc001mal.1	-	1	280	c.27G>A	c.(25-27)AAG>AAA	p.K9K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Silent_p.K9K	NM_005330	NP_005321	P02100	HBE_HUMAN	epsilon globin	9					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity				0		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.34e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGACGGCAGCCTTCTCCTCAG	0.532000													14	43					0	0	0.004007	0	0
OR51Q1	390061	broad.mit.edu	37	11	5443983	5443983	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:5443983G>A	uc010qzd.1	+	1	553	c.553G>A	c.(553-555)GAT>AAT	p.D185N	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCTCCACCAGGATATGATCCG	0.512000													46	108					0	0	0.014410	0	0
OR52E6	390078	broad.mit.edu	37	11	5862975	5862975	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:5862975G>A	uc010qzq.1	-	1	153	c.153C>T	c.(151-153)ATC>ATT	p.I51I	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	51	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCTCAGTTTGGATCACAAAGA	0.478000													16	47					0	0	0.006122	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16838742	16838742	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:16838742G>A	uc001mmo.2	-	11	1486	c.1471C>T	c.(1471-1473)CTG>TTG	p.L491L	PLEKHA7_uc010rcu.1_Silent_p.L491L|PLEKHA7_uc010rcv.1_Silent_p.L65L|PLEKHA7_uc001mmn.2_Silent_p.L199L	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	491					epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						TCACTTGGCAGGTTTCGGGGA	0.632000													27	90					0	0	0.009535	0	0
OR4C3	256144	broad.mit.edu	37	11	48346753	48346753	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:48346753C>T	uc010rhv.1	+	1	261	c.261C>T	c.(259-261)TTC>TTT	p.F87F		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGTATTTTTTCCTGGCCAACC	0.453000													6	69					0	0	0.001168	0	0
OR4C13	283092	broad.mit.edu	37	11	49974628	49974628	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:49974628C>T	uc010rhz.1	+	1	654	c.654C>T	c.(652-654)GTC>GTT	p.V218V		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	218	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						CCTGCGTGGTCATACTGTACT	0.488000													14	61					0	0	0.003163	0	0
OR10W1	81341	broad.mit.edu	37	11	58034422	58034422	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:58034422C>T	uc001nmq.1	-	1	1311	c.909G>A	c.(907-909)CAG>CAA	p.Q303Q		NM_207374	NP_997257	Q8NGF6	O10W1_HUMAN	olfactory receptor, family 10, subfamily W,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CCTAGCTGTTCTGGGAAAGGC	0.478000													14	56					0	0	0.003163	0	0
SLC22A25	387601	broad.mit.edu	37	11	62997014	62997014	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:62997014C>T	uc001nwr.1	-	1	111	c.111G>A	c.(109-111)CTG>CTA	p.L37L	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Silent_p.L37L	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	37	Extracellular (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						CGAAGTTCTCCAGCTGAGTTT	0.473000													14	63					0	0	0.001855	0	0
MRGPRD	116512	broad.mit.edu	37	11	68748441	68748441	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:68748441C>T	uc010rqf.1	-	1	15	c.15G>A	c.(13-15)TTG>TTA	p.L5L		NM_198923	NP_944605	Q8TDS7	MRGRD_HUMAN	MAS-related GPR, member D	5	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(1)	1			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CACTGCTATTCAAAGTCTGGT	0.562000													12	42					0	0	0.002450	0	0
KRTAP5-9	3846	broad.mit.edu	37	11	71260045	71260045	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:71260045C>T	uc001oqs.1	+	1	580	c.342C>T	c.(340-342)CCC>CCT	p.P114P		NM_005553	NP_005544	P26371	KRA59_HUMAN	keratin associated protein 5-9	114	8 X 4 AA repeats of C-C-X-P.				epidermis development	keratin filament					0						GCTGTAAGCCCTGTTGCTCCT	0.617000													27	84					0	0	0.004656	0	0
ODZ4	26011	broad.mit.edu	37	11	78399181	78399181	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:78399181G>A	uc001ozl.3	-	29	5641	c.5178C>T	c.(5176-5178)GTC>GTT	p.V1726V	ODZ4_uc009yvb.1_Silent_p.V310V	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1726	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						TCTCTACCTGGACATGCACTG	0.547000													39	108					0	0	0.005524	0	0
PCF11	51585	broad.mit.edu	37	11	82880555	82880555	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:82880555G>T	uc001ozx.3	+	8	3523	c.3178G>T	c.(3178-3180)GGT>TGT	p.G1060C	PCF11_uc010rsu.1_Missense_Mutation_p.G1191C	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	1060	Gly-rich.				mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						TGGTCAGCCAGGTCCTAGATT	0.507000													11	32					0.000978159	0.00225668	0.010729	1	0
FAT3	120114	broad.mit.edu	37	11	92087984	92087984	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:92087984G>A	uc001pdj.3	+	1	2723	c.2706G>A	c.(2704-2706)TTG>TTA	p.L902L		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	902	Cadherin 8.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATTATTCTTTGAAAATAGAAG	0.438000										TCGA Ovarian(4;0.039)			114	326					0	0	0.014410	0	0
TRPC6	7225	broad.mit.edu	37	11	101347111	101347111	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:101347111C>T	uc001pgk.3	-	6	2090	c.1665G>A	c.(1663-1665)CAG>CAA	p.Q555Q	TRPC6_uc009ywy.2_Silent_p.Q439Q|TRPC6_uc009ywz.1_Silent_p.Q500Q	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	555	Extracellular (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		CAATGATGCTCTGGGCTTTGG	0.393000													6	30					0	0	0.001168	0	0
KIAA1377	57562	broad.mit.edu	37	11	101833840	101833840	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:101833840G>A	uc001pgm.2	+	6	2344	c.2074G>A	c.(2074-2076)GAT>AAT	p.D692N	KIAA1377_uc001pgn.2_Missense_Mutation_p.D648N|KIAA1377_uc010run.1_Missense_Mutation_p.D493N|KIAA1377_uc009yxa.1_Missense_Mutation_p.D493N	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	692							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		GTCCAGGGAGGATTCTATCTC	0.388000													19	60					0	0	0.008871	0	0
BIRC3	330	broad.mit.edu	37	11	102207729	102207729	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:102207729C>T	uc001pgx.2	+	10	1933	c.1711C>T	c.(1711-1713)CCT>TCT	p.P571S		NM_182962	NP_892007	Q13489	BIRC3_HUMAN	baculoviral IAP repeat-containing protein 3	571	RING-type.				anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|skin(1)	4	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0146)		AGTGTTTATTCCTTGTGGTCA	0.383000			T	MALT1	MALT								8	25					0	0	0.003080	0	0
MMP7	4316	broad.mit.edu	37	11	102401358	102401358	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:102401358C>T	uc001phb.2	-	1	121	c.74G>A	c.(73-75)GGA>GAA	p.G25E	MMP7_uc009yxd.2_Missense_Mutation_p.G25E|MMP7_uc010rus.1_Missense_Mutation_p.G25E	NM_002423	NP_002414	P09237	MMP7_HUMAN	matrix metalloproteinase 7 preproprotein	25					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(1)	1	all_cancers(8;2.04e-05)|all_epithelial(12;0.00053)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0105)|all cancers(10;0.0496)|Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0147)		ACTCATGCCTCCCGCCTCCTG	0.547000													14	33					0	0	0.004990	0	0
HTR3A	3359	broad.mit.edu	37	11	113860273	113860273	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:113860273C>T	uc010rxb.1	+	8	1572	c.1339C>T	c.(1339-1341)CGG>TGG	p.R447W	HTR3A_uc010rxa.1_Missense_Mutation_p.R415W|HTR3A_uc009yyx.2_RNA|HTR3A_uc010rxc.1_Missense_Mutation_p.R394W	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	409	Cytoplasmic (Potential).		R -> Q.		digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	CCCACCACCTCGGGAGGCCTC	0.637000													24	56					0	0	0.003330	0	0
OR4D5	219875	broad.mit.edu	37	11	123811257	123811257	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:123811257C>T	uc001pzk.1	+	1	934	c.934C>T	c.(934-936)CTG>TTG	p.L312L		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	312	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		TATTGGTCCCCTGGAGCACAG	0.498000													9	41					0	0	0.006214	0	0
OR8B8	26493	broad.mit.edu	37	11	124310859	124310859	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:124310859C>T	uc010sal.1	-	1	123	c.123G>A	c.(121-123)GGG>GGA	p.G41G		NM_012378	NP_036510	Q15620	OR8B8_HUMAN	olfactory receptor, family 8, subfamily B,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		AGCCCAGGTTCCCCACCACAG	0.488000													25	44					0	0	0.004656	0	0
KCNJ1	3758	broad.mit.edu	37	11	128709329	128709329	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:128709329C>T	uc001qeo.1	-	2	918	c.867G>A	c.(865-867)CAG>CAA	p.Q289Q	KCNJ1_uc001qep.1_Silent_p.Q270Q|KCNJ1_uc001qeq.1_Silent_p.Q270Q|KCNJ1_uc001qer.1_Silent_p.Q270Q|KCNJ1_uc001qes.1_Silent_p.Q270Q	NM_000220	NP_000211	P48048	IRK1_HUMAN	potassium inwardly-rectifying channel J1 isoform	289	Cytoplasmic (By similarity).				excretion	voltage-gated potassium channel complex	ATP binding|inward rectifier potassium channel activity			ovary(3)|breast(1)	4	all_hematologic(175;0.0641)	all_lung(97;4.89e-06)|Lung NSC(97;9.34e-06)|Breast(109;0.00123)|all_hematologic(192;0.00793)|Renal(330;0.0112)|all_neural(223;0.0189)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;4.05e-06)|LUSC - Lung squamous cell carcinoma(976;0.008)|Lung(977;0.00942)	Acetohexamide(DB00414)|Chlorpropamide(DB00672)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Glimepiride(DB00222)|Glipizide(DB01067)|Glycodiazine(DB01382)|Minoxidil(DB00350)|Nateglinide(DB00731)|Repaglinide(DB00912)|Tolazamide(DB00839)|Tolbutamide(DB01124)	ATTCAAAGTCCTGCTGGAGAA	0.483000													7	25					0	0	0.004482	0	0
RAPGEF3	10411	broad.mit.edu	37	12	48132517	48132517	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:48132517C>T	uc009zkp.2	-	24	2796	c.2356G>A	c.(2356-2358)GGA>AGA	p.G786R	uc001rpv.2_Intron|RAPGEF3_uc001rpw.2_Missense_Mutation_p.G121R|RAPGEF3_uc001rpx.2_Missense_Mutation_p.G243R|RAPGEF3_uc010sln.1_Missense_Mutation_p.G283R|RAPGEF3_uc001rpy.2_RNA|RAPGEF3_uc009zkq.2_Missense_Mutation_p.G786R|RAPGEF3_uc001rpz.3_Missense_Mutation_p.G828R	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	786					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		GTGTGGTTTCCCTCATGAATG	0.478000													20	74					0	0	0.003330	0	0
KRT1	3848	broad.mit.edu	37	12	53072496	53072496	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:53072496C>T	uc001sau.1	-	2	695	c.636G>A	c.(634-636)TGG>TGA	p.W212*	KRT1_uc001sav.1_Nonsense_Mutation_p.W212*	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	212	Coil 1A.|Rod.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						GCAGCAGCTCCCATTTTGTTT	0.468000													10	43					0	0	0.008291	0	0
KRT8	3856	broad.mit.edu	37	12	53291219	53291219	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:53291219G>A	uc001sbd.2	-	8	1548	c.1445C>T	c.(1444-1446)CCC>CTC	p.P482L	KRT8_uc009zmj.2_3'UTR|KRT8_uc009zmk.1_Missense_Mutation_p.P510L|KRT8_uc009zml.1_Missense_Mutation_p.P482L|KRT8_uc009zmm.1_Missense_Mutation_p.P482L	NM_002273	NP_002264	P05787	K2C8_HUMAN	keratin 8	482	Tail.				cytoskeleton organization|interspecies interaction between organisms	cytoplasm|keratin filament|nuclear matrix|nucleoplasm	protein binding|structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.108)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGTTCACTTGGGCAGGACGTC	0.607000													15	49					0	0	0.004990	0	0
AMHR2	269	broad.mit.edu	37	12	53818965	53818965	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:53818965G>A	uc001scx.1	+	4	519	c.441G>A	c.(439-441)ATG>ATA	p.M147I	AMHR2_uc009zmy.1_Missense_Mutation_p.M147I	NM_020547	NP_065434	Q16671	AMHR2_HUMAN	anti-Mullerian hormone receptor, type II isoform	147	Extracellular (Potential).				Mullerian duct regression		ATP binding|hormone binding|metal ion binding			ovary(1)|skin(1)	2					Adenosine triphosphate(DB00171)	CCATCTGGATGGCACTGGTGC	0.587000									Persistant_Mullerian_Duct_Syndrome_(type_I_and_II)				25	67					0	0	0.009535	0	0
ITGA5	3678	broad.mit.edu	37	12	54799034	54799034	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:54799034G>A	uc001sga.2	-	12	1209	c.1141C>T	c.(1141-1143)CTT>TTT	p.L381F	ITGA5_uc010sow.1_RNA|ITGA5_uc009znp.1_RNA	NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	381	Extracellular (Potential).|FG-GAP 6.				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						GTGAGGGTAAGGGTGGGCGTG	0.637000													13	44					0	0	0.002450	0	0
OR6C74	254783	broad.mit.edu	37	12	55641155	55641155	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:55641155C>T	uc010spg.1	+	1	84	c.84C>T	c.(82-84)CTC>CTT	p.L28L		NM_001005490	NP_001005490	A6NCV1	O6C74_HUMAN	olfactory receptor, family 6, subfamily C,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TTTTTCTTCTCCTTTTTTTCA	0.373000													15	58					0	0	0.004007	0	0
OR6C70	390327	broad.mit.edu	37	12	55863458	55863458	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:55863458G>A	uc010spn.1	-	1	465	c.465C>T	c.(463-465)TTC>TTT	p.F155F		NM_001005499	NP_001005499	A6NIJ9	O6C70_HUMAN	olfactory receptor, family 6, subfamily C,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TCAGTGGAGTGAAAATGATCA	0.368000													11	29					0	0	0.010729	0	0
FAM19A2	338811	broad.mit.edu	37	12	62147424	62147424	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:62147424C>T	uc001sqw.2	-	4	1876	c.363G>A	c.(361-363)GGG>GGA	p.G121G	FAM19A2_uc001sqv.2_RNA|FAM19A2_uc001sqx.2_Silent_p.G121G|FAM19A2_uc001sqy.2_RNA	NM_178539	NP_848634	Q8N3H0	F19A2_HUMAN	family with sequence similarity 19 (chemokine	121						cytoplasm				ovary(1)	1			GBM - Glioblastoma multiforme(1;0.00484)	GBM - Glioblastoma multiforme(3;0.02)		TGACTTTATTCCCAGAGGAAC	0.433000													14	36					0	0	0.004007	0	0
CPSF6	11052	broad.mit.edu	37	12	69652823	69652823	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:69652823C>T	uc001sut.3	+	6	1258	c.1148C>T	c.(1147-1149)CCA>CTA	p.P383L	CPSF6_uc001suu.3_Missense_Mutation_p.P420L|CPSF6_uc010stk.1_Missense_Mutation_p.P14L	NM_007007	NP_008938	Q16630	CPSF6_HUMAN	cleavage and polyadenylation specific factor 6,	383	Pro-rich.				mRNA polyadenylation|protein tetramerization	mRNA cleavage factor complex|paraspeckles|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding				0	all_epithelial(5;2.47e-36)|Lung NSC(4;1.1e-32)|all_lung(4;6.26e-31)|Breast(13;1.59e-06)|Esophageal squamous(21;0.187)		Epithelial(6;4.89e-17)|BRCA - Breast invasive adenocarcinoma(5;8.5e-10)|Lung(24;6.04e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|LUSC - Lung squamous cell carcinoma(43;0.171)|Kidney(9;0.241)			CCAACAGATCCATATGGGCGA	0.512000													19	46					0	0	0.008871	0	0
CNOT2	4848	broad.mit.edu	37	12	70724190	70724190	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:70724190G>A	uc001svv.2	+	6	1089	c.510G>A	c.(508-510)TCG>TCA	p.S170S	CNOT2_uc009zro.2_Silent_p.S170S|CNOT2_uc009zrp.2_Silent_p.S150S|CNOT2_uc009zrq.2_Silent_p.S170S	NM_014515	NP_055330	Q9NZN8	CNOT2_HUMAN	CCR4-NOT transcription complex, subunit 2	170					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	protein binding|RNA polymerase II transcription cofactor activity				0	Renal(347;0.236)		GBM - Glioblastoma multiforme(1;4.77e-09)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00243)|STAD - Stomach adenocarcinoma(21;0.0118)			ACAGAAGCTCGCCAAGCATAA	0.453000													8	55					0	0	0.004482	0	0
NAV3	89795	broad.mit.edu	37	12	78401099	78401099	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:78401099C>T	uc001syp.2	+	8	1954	c.1781C>T	c.(1780-1782)TCT>TTT	p.S594F	NAV3_uc001syo.2_Missense_Mutation_p.S594F	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	594						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						GCTTCTCCTTCTGGTTCCTGT	0.522000										HNSCC(70;0.22)			30	77					0	0	0.008361	0	0
PPFIA2	8499	broad.mit.edu	37	12	81747054	81747054	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:81747054G>A	uc001szo.1	-	17	1999	c.1838C>T	c.(1837-1839)CCT>CTT	p.P613L	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	539										ovary(3)|lung(2)|pancreas(1)	6						ACTTTCAAAAGGGTGGCTGCT	0.393000													13	38					0	0	0.004007	0	0
CLLU1OS	574016	broad.mit.edu	37	12	92814813	92814813	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:92814813C>T	uc001tcb.1	-	3	281	c.279G>A	c.(277-279)GGG>GGA	p.G93G	CLLU1_uc001tcc.2_5'Flank|CLLU1_uc001tcd.2_5'Flank|CLLU1_uc001tce.1_5'Flank|CLLU1_uc001tcf.2_5'Flank	NM_001025232	NP_001020403	Q5K130	CLU1O_HUMAN	chronic lymphocytic leukemia up-regulated 1	93											0						CTTCCTTCTTCCCATCATCAT	0.428000													48	171					0	0	0.014410	0	0
NTN4	59277	broad.mit.edu	37	12	96131685	96131685	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:96131685G>A	uc001tei.2	-	3	1272	c.823C>T	c.(823-825)CAT>TAT	p.H275Y	NTN4_uc009ztf.2_Missense_Mutation_p.H275Y|NTN4_uc009ztg.2_Missense_Mutation_p.H238Y	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor	275	Laminin EGF-like 1.				axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CTGAAGCCATGAACAGGTATG	0.453000													22	40					0	0	0.002780	0	0
CCDC38	120935	broad.mit.edu	37	12	96311023	96311023	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:96311023G>A	uc001tek.1	-	4	422	c.188C>T	c.(187-189)TCA>TTA	p.S63L		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	63										skin(1)	1						CATTCTGGATGAAAAAGTAGT	0.373000													7	31					0	0	0.003080	0	0
ANO4	121601	broad.mit.edu	37	12	101520699	101520699	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:101520699C>T	uc010svm.1	+	27	3291	c.2719C>T	c.(2719-2721)CCA>TCA	p.P907S	ANO4_uc001thw.2_Missense_Mutation_p.P872S|ANO4_uc001thx.2_Missense_Mutation_p.P907S|ANO4_uc001thy.2_Missense_Mutation_p.P427S	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	907	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						ATATCTGATCCCAGACCTCCC	0.443000										HNSCC(74;0.22)			5	26					0	0	0.000602	0	0
DRAM1	55332	broad.mit.edu	37	12	102295101	102295101	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:102295101G>A	uc001tix.2	+	3	695	c.232G>A	c.(232-234)GTA>ATA	p.V78I	DRAM1_uc010svv.1_Missense_Mutation_p.V78I	NM_018370	NP_060840	Q8N682	DRAM1_HUMAN	DNA-damage regulated autophagy modulator 1	78					apoptosis|autophagy	integral to membrane|lysosomal membrane				ovary(1)	1						ATACAAAATAGTACAGAAGCA	0.393000													13	20					0	0	0.001855	0	0
CCDC63	160762	broad.mit.edu	37	12	111319097	111319097	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:111319097G>A	uc001trv.1	+	7	1045	c.850G>A	c.(850-852)GAA>AAA	p.E284K	CCDC63_uc009zvt.1_3'UTR|CCDC63_uc010sye.1_Missense_Mutation_p.E244K|CCDC63_uc001trw.1_Missense_Mutation_p.E199K	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	284	Potential.							p.E284K(1)		skin(6)|ovary(1)|pancreas(1)	8						CAAAAGGGAGGAAGGTACACC	0.433000													3	15					0	0	0.004672	0	0
TAOK3	51347	broad.mit.edu	37	12	118588821	118588822	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:118588821_118588822GG>AA	uc001twx.2	-	21	2972_2973	c.2677_2678CC>TT	c.(2677-2679)CCT>TTT	p.P893F	TAOK3_uc001twv.2_Missense_Mutation_p.P433F|TAOK3_uc001tww.2_Missense_Mutation_p.P723F|TAOK3_uc001twy.3_Missense_Mutation_p.P893F	NM_016281	NP_057365	Q9H2K8	TAOK3_HUMAN	TAO kinase 3	893					MAPKKK cascade|negative regulation of JNK cascade|positive regulation of JNK cascade|protein autophosphorylation	mitochondrion|plasma membrane	ATP binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GTCCTCCTTAGGAAAATCTAAT	0.327000													18	57					0	0	0.004672	0	0
CIT	11113	broad.mit.edu	37	12	120135790	120135790	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:120135790G>A	uc001txi.1	-	44	5620	c.5567C>T	c.(5566-5568)TCC>TTC	p.S1856F	CIT_uc001txh.1_Missense_Mutation_p.S1375F|CIT_uc001txj.1_Missense_Mutation_p.S1898F	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1856	CNH.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		CCCTGCTGAGGAGCGTGCCTG	0.527000													41	109					0	0	0.013114	0	0
MMP17	4326	broad.mit.edu	37	12	132329987	132329987	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr12:132329987C>T	uc001ujc.1	+	8	1296	c.1197C>T	c.(1195-1197)TTC>TTT	p.F399F	MMP17_uc001ujd.1_Silent_p.F315F	NM_016155	NP_057239	Q9ULZ9	MMP17_HUMAN	matrix metalloproteinase 17 preproprotein	399	Hemopexin-like 2.				proteolysis	anchored to membrane|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.82e-07)|Epithelial(86;1.51e-06)|all cancers(50;2.35e-05)		AGATCGTCTTCTTTAAAGGTG	0.672000													5	18					0	0	0.000602	0	0
FGF9	2254	broad.mit.edu	37	13	22275499	22275499	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr13:22275499C>T	uc001uog.2	+	3	1389	c.552C>T	c.(550-552)TTC>TTT	p.F184F		NM_002010	NP_002001	P31371	FGF9_HUMAN	fibroblast growth factor 9 precursor	184					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|male gonad development|positive regulation of cell division	extracellular space	growth factor activity|heparin binding				0		all_cancers(29;1.23e-20)|all_epithelial(30;9.83e-19)|all_lung(29;9.64e-17)|Lung SC(185;0.0262)|Breast(139;0.106)		all cancers(112;3.92e-05)|Epithelial(112;0.000166)|OV - Ovarian serous cystadenocarcinoma(117;0.00314)|Lung(94;0.163)		ACCAGAAATTCACACATTTTT	0.433000													13	23					0	0	0.013537	0	0
OR4N2	390429	broad.mit.edu	37	14	20296402	20296402	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr14:20296402C>T	uc010tkv.1	+	1	795	c.795C>T	c.(793-795)TTC>TTT	p.F265F		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCAGGGCTTTCCCAGCTGACA	0.453000													19	23					0	0	0.014323	0	0
OR10G2	26534	broad.mit.edu	37	14	22102844	22102844	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr14:22102844G>A	uc010tmc.1	-	1	155	c.155C>T	c.(154-156)ACC>ATC	p.T52I		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	52	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		AGCCCACATGGTGAGCAGAAT	0.542000													15	25					0	0	0.002450	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884614	24884614	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr14:24884614C>T	uc001wpf.3	+	9	3977	c.3659C>T	c.(3658-3660)TCC>TTC	p.S1220F		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1220					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						AAGCATTTTTCCCGCTGCATT	0.637000													21	32					0	0	0.008871	0	0
AKAP6	9472	broad.mit.edu	37	14	33291332	33291332	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr14:33291332G>A	uc001wrq.2	+	13	4483	c.4313G>A	c.(4312-4314)GGA>GAA	p.G1438E		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1438					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TGTGTAAATGGAAAAGTTGGA	0.368000													7	17					0	0	0.004482	0	0
PAX9	5083	broad.mit.edu	37	14	37145435	37145436	+	Missense_Mutation	DNP	TG	AA	AA			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr14:37145435_37145436TG>AA	uc001wty.3	+	5	1521_1522	c.804_805TG>AA	c.(802-807)TTTGTG>TTAATG	p.268_269FV>LM	PAX9_uc010amq.2_RNA	NM_006194	NP_006185	P55771	PAX9_HUMAN	paired box 9	268_269					multicellular organismal development|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)|Breast(36;0.218)		Lung(8;1.12e-09)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.00357)|all cancers(34;0.00998)|LUSC - Lung squamous cell carcinoma(13;0.0189)	GBM - Glioblastoma multiforme(112;0.0181)		TGGGCAGTTTTGTGTCAGCATC	0.480000													23	34					0	0	0.004672	0	0
PLEKHG3	26030	broad.mit.edu	37	14	65208364	65208364	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr14:65208364C>T	uc001xho.1	+	16	2398	c.2129C>T	c.(2128-2130)TCC>TTC	p.S710F	PLEKHG3_uc001xhn.1_Missense_Mutation_p.S654F|PLEKHG3_uc001xhp.2_Missense_Mutation_p.S831F|PLEKHG3_uc010aqh.1_Missense_Mutation_p.S252F|PLEKHG3_uc001xhq.1_Missense_Mutation_p.S215F	NM_015549	NP_056364	A1L390	PKHG3_HUMAN	pleckstrin homology domain containing, family G,	710					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)	1				all cancers(60;0.00802)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)|BRCA - Breast invasive adenocarcinoma(234;0.0485)		TCAGCACTCTCCACCCGAGAC	0.567000													21	36					0	0	0.014323	0	0
KCNK13	56659	broad.mit.edu	37	14	90651308	90651308	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr14:90651308C>T	uc001xye.1	+	2	1630	c.1188C>T	c.(1186-1188)ATC>ATT	p.I396I		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	396	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				CCTTTGCAATCATGAACAACA	0.592000													6	12					0	0	0.001984	0	0
RAGE	5891	broad.mit.edu	37	14	102718264	102718264	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr14:102718264G>A	uc001ylm.2	-	5	578	c.352C>T	c.(352-354)CAT>TAT	p.H118Y	RAGE_uc010txv.1_Missense_Mutation_p.H88Y|RAGE_uc001yln.2_5'UTR	NM_014226	NP_055041	Q9UQ07	MOK_HUMAN	MAPK/MAK/MRK overlapping kinase	118	Protein kinase.				signal transduction	Golgi apparatus	ATP binding|cyclin-dependent protein kinase activity|protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						CTGTGAATATGATCCAGGGAC	0.323000													10	25					0	0	0.010729	0	0
ADAM6	8755	broad.mit.edu	37	14	106926642	106926642	+	RNA	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr14:106926642C>T	uc010tyt.1	-	234		c.10016G>A			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						GTCCAAACTCCATGGTGCGTT	0.498000													22	48					0	0	0.003330	0	0
GCOM1	145781	broad.mit.edu	37	15	57925811	57925811	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr15:57925811G>A	uc002aei.2	+	8	924	c.805G>A	c.(805-807)GAA>AAA	p.E269K	GCOM1_uc002aej.2_Missense_Mutation_p.E269K|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Missense_Mutation_p.E269K|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Missense_Mutation_p.E269K|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	269	Potential.				intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						TCTTTTGCAGGAAGAAACCAA	0.463000													17	54					0	0	0.006122	0	0
DENND4A	10260	broad.mit.edu	37	15	65968786	65968786	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr15:65968786C>T	uc002aph.2	-	23	4612	c.4234G>A	c.(4234-4236)GAA>AAA	p.E1412K	DENND4A_uc002api.2_Missense_Mutation_p.E1455K	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	1412					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GACAAACCTTCCAAGGATGCA	0.378000													9	21					0	0	0.006214	0	0
CPLX3	594855	broad.mit.edu	37	15	75119170	75119170	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr15:75119170G>A	uc002ayu.1	+	1	220	c.126G>A	c.(124-126)GAG>GAA	p.E42E	LMAN1L_uc010bke.1_3'UTR	NM_001030005	NP_001025176	Q8WVH0	CPLX3_HUMAN	complexin 3 precursor	42	Potential.					cell junction|synapse	syntaxin binding				0						TGAGCCGGGAGGAGTACGAGG	0.627000													11	36					0	0	0.008291	0	0
C15orf39	56905	broad.mit.edu	37	15	75500361	75500361	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr15:75500361C>T	uc002azp.3	+	2	2292	c.1972C>T	c.(1972-1974)CGT>TGT	p.R658C	C15orf39_uc002azq.3_Missense_Mutation_p.R658C|C15orf39_uc002azr.3_Missense_Mutation_p.R56C	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	hypothetical protein LOC56905	658											0						CAAGATCCTCCGTCCGGCACC	0.622000													17	45					0	0	0.006122	0	0
C15orf27	123591	broad.mit.edu	37	15	76452494	76452494	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr15:76452494C>T	uc002bbq.2	+	5	596	c.441C>T	c.(439-441)TCC>TCT	p.S147S	C15orf27_uc010bkp.2_5'UTR|C15orf27_uc002bbr.2_5'UTR	NM_152335	NP_689548	Q2M3C6	CO027_HUMAN	hypothetical protein LOC123591	147	Helical; (Potential).					integral to membrane					0						TCATTCTGTCCGTGTTCTTCT	0.507000													49	152					0	0	0.014410	0	0
KIAA1199	57214	broad.mit.edu	37	15	81212554	81212554	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr15:81212554C>T	uc002bfw.1	+	14	2177	c.1917C>T	c.(1915-1917)CTC>CTT	p.L639L	KIAA1199_uc010unn.1_Silent_p.L639L	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	639										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						GAACCCTCCTCCCCTCGGACC	0.557000													8	39					0	0	0.006214	0	0
SH3GL3	6457	broad.mit.edu	37	15	84257443	84257443	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr15:84257443G>A	uc002bjw.2	+	8	953	c.758G>A	c.(757-759)CGA>CAA	p.R253Q	SH3GL3_uc010uot.1_Missense_Mutation_p.R253Q|SH3GL3_uc002bjx.2_Missense_Mutation_p.R184Q|SH3GL3_uc002bju.2_Missense_Mutation_p.R261Q|SH3GL3_uc002bjv.2_RNA	NM_003027	NP_003018	Q99963	SH3G3_HUMAN	SH3-domain GRB2-like 3	253	Interaction with ARC (By similarity).				central nervous system development|endocytosis|signal transduction	early endosome membrane	identical protein binding|lipid binding			pancreas(1)|central_nervous_system(1)|skin(1)	3						GTCCCCAGACGAGAATACAAG	0.458000													11	37					0	0	0.008291	0	0
ACAN	176	broad.mit.edu	37	15	89402228	89402228	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr15:89402228G>A	uc010upo.1	+	12	6786	c.6412G>A	c.(6412-6414)GAA>AAA	p.E2138K	ACAN_uc010upp.1_Missense_Mutation_p.E2138K|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2138					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			TGCATTCCACGAAGCTAACCT	0.577000													20	52					0	0	0.010504	0	0
SEC14L5	9717	broad.mit.edu	37	16	5061172	5061172	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr16:5061172G>A	uc002cye.2	+	15	2057	c.1877G>A	c.(1876-1878)TGC>TAC	p.C626Y		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	626	GOLD.					integral to membrane|intracellular	transporter activity				0						AGCGTGGCCTGCAGCCTCCCG	0.647000													5	5					0	0	0.001168	0	0
A2BP1	54715	broad.mit.edu	37	16	7714947	7714947	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr16:7714947G>A	uc002cys.2	+	13	1895	c.907G>A	c.(907-909)GGA>AGA	p.G303R	A2BP1_uc002cyt.2_Missense_Mutation_p.G276R|A2BP1_uc010uxz.1_Missense_Mutation_p.G346R|A2BP1_uc010uya.1_Missense_Mutation_p.G260R|A2BP1_uc010uyb.1_Missense_Mutation_p.G303R|A2BP1_uc002cyw.2_Intron|A2BP1_uc002cyy.2_Intron|A2BP1_uc002cyx.2_Intron|A2BP1_uc010uyc.1_Intron	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	303					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		TTACCAGGATGGATTTTATGG	0.438000													27	94					0	0	0.009535	0	0
SCNN1B	6338	broad.mit.edu	37	16	23364127	23364127	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr16:23364127C>T	uc002dln.2	+	3	493	c.317C>T	c.(316-318)TCC>TTC	p.S106F		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	106	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	TCCAGGTATTCCAAAATCAAG	0.473000													20	36					0	0	0.014323	0	0
HP	3240	broad.mit.edu	37	16	72094728	72094728	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr16:72094728G>A	uc002fbr.3	+	7	1204	c.1160G>A	c.(1159-1161)GGT>GAT	p.G387D	TXNL4B_uc010cgl.2_Intron|HP_uc010cgm.2_Missense_Mutation_p.G328D|HP_uc002fbt.3_Missense_Mutation_p.G328D|HP_uc002fbu.1_Missense_Mutation_p.G125D|HP_uc002fbv.3_Missense_Mutation_p.G298D|HP_uc002fbw.3_Missense_Mutation_p.G209D|HP_uc002fbx.3_Missense_Mutation_p.G209D|HPR_uc002fby.2_5'Flank	NM_005143	NP_005134	P00738	HPT_HUMAN	haptoglobin isoform 1 preproprotein	387	Peptidase S1.				cellular iron ion homeostasis|defense response|negative regulation of hydrogen peroxide catabolic process|negative regulation of oxidoreductase activity|positive regulation of cell death|proteolysis|response to hydrogen peroxide	extracellular region|haptoglobin-hemoglobin complex	hemoglobin binding|serine-type endopeptidase activity				0		Renal(780;9.67e-05)|Ovarian(137;0.00327)|Hepatocellular(780;0.114)		BRCA - Breast invasive adenocarcinoma(221;0.00015)|Kidney(780;0.000529)		GCTGAGTATGGTGTGTATGTG	0.527000													30	73					0	0	0.007291	0	0
HPR	3250	broad.mit.edu	37	16	72110817	72110817	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr16:72110817G>A	uc002fby.2	+	5	914	c.884G>A	c.(883-885)GGC>GAC	p.G295D	TXNL4B_uc010cgl.2_Intron	NM_020995	NP_066275	P00739	HPTR_HUMAN	haptoglobin-related protein precursor	295	Peptidase S1.				proteolysis	spherical high-density lipoprotein particle	hemoglobin binding|serine-type endopeptidase activity			central_nervous_system(1)	1		Ovarian(137;0.125)				ACCTGCTATGGCGATGCGGGC	0.557000													19	38					0	0	0.008871	0	0
WDR59	79726	broad.mit.edu	37	16	74927577	74927577	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr16:74927577A>C	uc002fdh.1	-	19	2102	c.2000T>G	c.(1999-2001)ATA>AGA	p.I667R	WDR59_uc002fdf.1_Missense_Mutation_p.I112R|WDR59_uc002fdg.1_Missense_Mutation_p.I259R	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	667										ovary(1)|breast(1)	2						TTGTACTTACATGTACAGCTC	0.358000													9	20					0	0	0.008291	0	0
TUBB3	10381	broad.mit.edu	37	16	90001825	90001825	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr16:90001825C>T	uc002fph.1	+	4	1031	c.966C>T	c.(964-966)TCC>TCT	p.S322S	TUBB3_uc002fpf.2_Silent_p.S669S|TUBB3_uc010ciz.1_Silent_p.S250S|TUBB3_uc002fpg.1_Silent_p.S176S|TUBB3_uc002fpi.1_Silent_p.S250S|TUBB3_uc002fpj.1_Silent_p.S250S|TUBB3_uc010cjb.1_Silent_p.S176S|TUBB3_uc002fpk.1_Silent_p.S176S	NM_006086	NP_006077	Q13509	TBB3_HUMAN	tubulin, beta, 4	322					'de novo' posttranslational protein folding|axon guidance|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(2)|pancreas(1)	3		all_cancers(9;1.69e-11)|Lung NSC(15;8.94e-06)|all_lung(18;1.39e-05)|all_neural(9;0.00581)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		GCCGCATGTCCATGAAGGAGG	0.617000													21	49					0	0	0.010504	0	0
OR1D2	4991	broad.mit.edu	37	17	2996197	2996197	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:2996197G>A	uc010vrb.1	-	1	94	c.94C>T	c.(94-96)CTG>TTG	p.L32L		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	32	Helical; Name=1; (Potential).				cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						TACATGGACAGGAACATCCAA	0.552000													29	54					0	0	0.007291	0	0
ZNF232	7775	broad.mit.edu	37	17	5009481	5009481	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:5009481G>A	uc002gas.2	-	5	1646	c.892C>T	c.(892-894)CAT>TAT	p.H298Y	ZNF232_uc002gar.1_Missense_Mutation_p.H316Y|ZNF232_uc002gat.2_Missense_Mutation_p.H325Y	NM_014519	NP_055334	Q9UNY5	ZN232_HUMAN	zinc finger protein 232	298	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2						TCTCCAGAATGAACTCTCTGG	0.413000													28	70					0	0	0.006320	0	0
DLG4	1742	broad.mit.edu	37	17	7096426	7096426	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:7096426C>T	uc002get.3	-	19	3034	c.1833G>A	c.(1831-1833)CGG>CGA	p.R611R	DLG4_uc010vtm.1_RNA|DLG4_uc010vtn.1_Silent_p.R508R|DLG4_uc010cly.2_Silent_p.R565R|DLG4_uc010vto.1_Silent_p.R608R	NM_001365	NP_001356	P78352	DLG4_HUMAN	post-synaptic density protein 95 isoform 1	568	Guanylate kinase-like.				axon guidance|learning|protein complex assembly|protein localization to synapse|signal transduction|synaptic transmission	cell junction|cortical cytoskeleton|endocytic vesicle membrane|neuron spine|postsynaptic density|postsynaptic membrane|synaptosome	protein binding|protein C-terminus binding			ovary(1)|breast(1)	2						CCCGCTTGGGCCGTGTCGTAT	0.532000													25	93					0	0	0.004656	0	0
MYH8	4626	broad.mit.edu	37	17	10299903	10299903	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:10299903C>T	uc002gmm.2	-	32	4590	c.4495G>A	c.(4495-4497)GAA>AAA	p.E1499K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1499	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CTTAGCGTTTCGAGTTGATCC	0.473000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				8	23					0	0	0.003080	0	0
MYH4	4622	broad.mit.edu	37	17	10362600	10362600	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:10362600C>T	uc002gmn.2	-	15	1666	c.1555G>A	c.(1555-1557)GAC>AAC	p.D519N	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	519	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GCAGCCAGGTCCATCCCGAAG	0.468000													14	56					0	0	0.006122	0	0
MYH2	4620	broad.mit.edu	37	17	10440988	10440988	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:10440988G>A	uc010coi.2	-	15	1709	c.1581C>T	c.(1579-1581)ATC>ATT	p.I527I	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.I527I|MYH2_uc010coj.2_Silent_p.I527I	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	527	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CAACCTTCTCGATGAGCTCGA	0.428000													21	74					0	0	0.005443	0	0
DNAH9	1770	broad.mit.edu	37	17	11556228	11556228	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:11556228C>T	uc002gne.2	+	14	2572	c.2504C>T	c.(2503-2505)TCC>TTC	p.S835F	DNAH9_uc010coo.2_Missense_Mutation_p.S129F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	835	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AAAAGGGAATCCCTTCTTTCT	0.378000													8	33					0	0	0.006214	0	0
MYOCD	93649	broad.mit.edu	37	17	12626201	12626201	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:12626201G>A	uc002gnn.2	+	5	590	c.291G>A	c.(289-291)ATG>ATA	p.M97I	MYOCD_uc002gno.2_Missense_Mutation_p.M97I|MYOCD_uc002gnp.1_Missense_Mutation_p.M1I	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	97					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		CTGCTCAGATGAAGCTGAAAA	0.443000													25	98					0	0	0.005443	0	0
MYOCD	93649	broad.mit.edu	37	17	12639507	12639507	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:12639507G>A	uc002gnn.2	+	6	744	c.445G>A	c.(445-447)GAT>AAT	p.D149N	MYOCD_uc002gno.2_Missense_Mutation_p.D149N|MYOCD_uc002gnp.1_Missense_Mutation_p.D53N	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	149					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		CAAATCCACGGATGCTTTTGC	0.532000													52	140					0	0	0.014410	0	0
CCDC144A	9720	broad.mit.edu	37	17	16664987	16664987	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:16664987G>A	uc002gqk.1	+	13	3697	c.3621G>A	c.(3619-3621)AGG>AGA	p.R1207R	CCDC144A_uc002gql.1_Silent_p.R723R|LOC162632_uc010cpj.1_RNA	NM_014695	NP_055510	A2RUR9	C144A_HUMAN	coiled-coil domain containing 144A	1207	Potential.										0						AAAGAGCAAGGAAGGAGATAG	0.328000													7	47					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	17	45127842	45127842	+	RNA	SNP	T	C	C			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:45127842T>C	uc010wkl.1	-	1		c.60A>G								Homo sapiens cDNA FLJ38031 fis, clone CTONG2013348.																		TCCCCAACAATGTGAGAAGGC	0.527000													39	207					0	0	0.006230	0	0
Unknown	0	broad.mit.edu	37	17	45127858	45127858	+	RNA	SNP	T	G	G			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:45127858T>G	uc010wkl.1	-	1		c.44A>C								Homo sapiens cDNA FLJ38031 fis, clone CTONG2013348.																		AAGGCTCATTTCTCATGTTAT	0.512000													38	201					0	0	0.006999	0	0
TMEM92	162461	broad.mit.edu	37	17	48356327	48356327	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:48356327C>T	uc002iqn.1	+	4	366	c.336C>T	c.(334-336)TCC>TCT	p.S112S		NM_153229	NP_694961	Q6UXU6	TMM92_HUMAN	transmembrane protein 92 precursor	112	Pro-rich.|Cytoplasmic (Potential).					integral to membrane					0						TCAGAGTATCCCTTTCTGCGC	0.652000													5	29					0	0	0.000602	0	0
LPO	4025	broad.mit.edu	37	17	56326423	56326423	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:56326423C>T	uc002ivt.2	+	5	644	c.328C>T	c.(328-330)CCC>TCC	p.P110S	LPO_uc010dco.2_Missense_Mutation_p.P110S|LPO_uc010wnr.1_Missense_Mutation_p.P27S|LPO_uc010wns.1_Missense_Mutation_p.P51S|LPO_uc010dcp.2_Missense_Mutation_p.P27S|LPO_uc010dcq.2_5'UTR	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	110					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						TGTTTCAGATCCCAGCCTGGA	0.577000													33	142					0	0	0.004289	0	0
RAD51C	5889	broad.mit.edu	37	17	56787259	56787259	+	Missense_Mutation	SNP	C	T	T	rs28363311		TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:56787259C>T	uc002iwu.2	+	5	787	c.745C>T	c.(745-747)CGT>TGT	p.R249C	RAD51C_uc010woa.1_Missense_Mutation_p.R249C|RAD51C_uc010ddc.2_RNA|RAD51C_uc002iwv.2_RNA|RAD51C_uc002iww.2_RNA	NM_058216	NP_478123	O43502	RA51C_HUMAN	RAD51 homolog C isoform 1	249					blood coagulation|DNA repair	mitochondrion|nucleoplasm|perinuclear region of cytoplasm	ATP binding|DNA binding|DNA-dependent ATPase activity				0	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TTTTCCATTTCGTCATGACCT	0.333000								Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2				48	74					0	0	0.014410	0	0
CA4	762	broad.mit.edu	37	17	58235079	58235079	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:58235079G>A	uc002iym.3	+	5	537	c.443G>A	c.(442-444)GGG>GAG	p.G148E	CA4_uc010wou.1_Intron	NM_000717	NP_000708	P22748	CAH4_HUMAN	carbonic anhydrase IV precursor	148					bicarbonate transport|one-carbon metabolic process	anchored to external side of plasma membrane|apical plasma membrane|brush border membrane|ER-Golgi intermediate compartment|membrane fraction|perinuclear region of cytoplasm|rough endoplasmic reticulum|secretory granule membrane|trans-Golgi network|transport vesicle membrane	carbonate dehydratase activity|protein binding|zinc ion binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.83e-12)|all cancers(12;6.83e-11)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	AAAGAGAAGGGGACATCGAGG	0.587000													12	58					0	0	0.013537	0	0
EFCAB3	146779	broad.mit.edu	37	17	60484004	60484004	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:60484004G>A	uc002izu.1	+	7	730	c.652G>A	c.(652-654)GAT>AAT	p.D218N	EFCAB3_uc010wpc.1_Missense_Mutation_p.D270N	NM_173503	NP_775774	Q8N7B9	EFCB3_HUMAN	EF-hand calcium binding domain 3 isoform b	218							calcium ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(2;2.27e-11)			GAAAGAAAAGGATTTATTTAA	0.383000													6	29					0	0	0.001984	0	0
ACE	1636	broad.mit.edu	37	17	61555443	61555443	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:61555443T>C	uc002jau.1	+	2	423	c.401T>C	c.(400-402)CTG>CCG	p.L134P	ACE_uc010wph.1_Missense_Mutation_p.L134P|ACE_uc010wpi.1_Missense_Mutation_p.L134P|ACE_uc010ddu.1_5'UTR	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	134	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	AACCTGCCCCTGGCTAAGCGG	0.677000													4	8					0	0	0.000602	0	0
ACE	1636	broad.mit.edu	37	17	61571304	61571304	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:61571304T>C	uc002jau.1	+	21	3180	c.3158T>C	c.(3157-3159)ATG>ACG	p.M1053T	ACE_uc002jav.1_Missense_Mutation_p.M479T|ACE_uc010ddv.1_Missense_Mutation_p.M280T|ACE_uc010wpj.1_Missense_Mutation_p.M479T|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Missense_Mutation_p.M299T	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	1053	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	AACTTTCTGATGAAGATGGCC	0.552000													16	46					0	0	0.010504	0	0
MAP3K3	4215	broad.mit.edu	37	17	61730009	61730009	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:61730009A>G	uc002jbg.2	+	4	579	c.260A>G	c.(259-261)AAC>AGC	p.N87S	MAP3K3_uc002jbe.2_Missense_Mutation_p.N118S|MAP3K3_uc002jbf.2_Missense_Mutation_p.N118S|MAP3K3_uc002jbh.2_Missense_Mutation_p.N118S|MAP3K3_uc010wpo.1_Missense_Mutation_p.N2S|MAP3K3_uc010wpp.1_Missense_Mutation_p.N87S	NM_002401	NP_002392	Q99759	M3K3_HUMAN	mitogen-activated protein kinase kinase kinase 3	87	OPR.				MAPKKK cascade|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autophosphorylation	cytosol	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			lung(3)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)	6						CATTACATGAACAATGAGGTG	0.443000													4	16					0	0	0.009096	0	0
TTYH2	94015	broad.mit.edu	37	17	72256272	72256272	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:72256272C>T	uc002jkc.2	+	14	1560	c.1529C>T	c.(1528-1530)TCT>TTT	p.S510F	TTYH2_uc010wqw.1_Missense_Mutation_p.S489F|TTYH2_uc002jkd.2_Missense_Mutation_p.S189F	NM_032646	NP_116035	Q9BSA4	TTYH2_HUMAN	tweety 2 isoform 1	510	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity|protein binding			ovary(3)|large_intestine(1)	4						TGGCAGTACTCTCCCAGCATG	0.582000													41	133					0	0	0.011902	0	0
QRICH2	84074	broad.mit.edu	37	17	74273322	74273322	+	Silent	SNP	G	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:74273322G>T	uc002jrd.1	-	16	4869	c.4689C>A	c.(4687-4689)ACC>ACA	p.T1563T	QRICH2_uc010wsz.1_Intron|QRICH2_uc010dgw.1_Silent_p.T407T	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1563							protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						GGTAGGGGTAGGTGAGGGTGT	0.612000													24	111					4.43304e-23	1.0513e-22	0.006320	1	0
B3GNTL1	146712	broad.mit.edu	37	17	80915071	80915071	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:80915071G>A	uc002kgg.1	-	10	930	c.916C>T	c.(916-918)CAC>TAC	p.H306Y	B3GNTL1_uc002kgf.1_Missense_Mutation_p.H195Y|B3GNTL1_uc002kge.1_RNA	NM_001009905	NP_001009905	Q67FW5	B3GNL_HUMAN	UDP-GlcNAc:betaGal	306							transferase activity, transferring glycosyl groups			ovary(1)|pancreas(1)	2	Breast(20;0.000443)|all_neural(118;0.0779)	all_cancers(8;0.0396)|all_epithelial(8;0.0556)	BRCA - Breast invasive adenocarcinoma(99;0.0517)|OV - Ovarian serous cystadenocarcinoma(97;0.0868)			GAGTCCTCGTGGCAATAGAAG	0.632000													51	68					0	0	0.014410	0	0
ROCK1	6093	broad.mit.edu	37	18	18586524	18586524	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr18:18586524G>T	uc002kte.2	-	16	2614	c.1673C>A	c.(1672-1674)TCG>TAG	p.S558*		NM_005406	NP_005397	Q13464	ROCK1_HUMAN	Rho-associated, coiled-coil containing protein	558	Interaction with FHOD1.|Potential.				actin cytoskeleton organization|axon guidance|cellular component disassembly involved in apoptosis|cytokinesis|leukocyte tethering or rolling|membrane to membrane docking|Rho protein signal transduction	centriole|cytosol|Golgi membrane	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			lung(2)|breast(2)|central_nervous_system(1)	5	Melanoma(1;0.165)					AGCTGTGTCCGATTCTGTCCT	0.358000													19	55					3.32936e-07	7.78685e-07	0.006122	1	0
DSC1	1823	broad.mit.edu	37	18	28725676	28725676	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr18:28725676C>T	uc002kwn.2	-	7	1099	c.837G>A	c.(835-837)CTG>CTA	p.L279L	DSC1_uc002kwm.2_Silent_p.L279L	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	279	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TTTTATATTTCAGACGAGTAT	0.408000													16	49					0	0	0.004990	0	0
DSG1	1828	broad.mit.edu	37	18	28906969	28906969	+	Splice_Site	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr18:28906969G>A	uc002kwp.2	+	3	428	c.216_splice	c.e3+1	p.K72_splice		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein						calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			AATCGCCAAAGTAGGTATCAA	0.413000													10	49					0	0	0.010729	0	0
MYO5B	4645	broad.mit.edu	37	18	47432876	47432876	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr18:47432876C>T	uc002leb.2	-	19	2615	c.2327G>A	c.(2326-2328)CGG>CAG	p.R776Q		NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	776	IQ 1.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CAGCCATCCCCGGACAGTTTT	0.592000													7	42					0	0	0.001984	0	0
TSHZ1	10194	broad.mit.edu	37	18	72998240	72998241	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr18:72998240_72998241CC>TT	uc002lly.2	+	2	1306_1307	c.743_744CC>TT	c.(742-744)TCC>TTT	p.S248F		NM_005786	NP_005777	Q6ZSZ6	TSH1_HUMAN	teashirt family zinc finger 1	293						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Esophageal squamous(42;0.129)|Prostate(75;0.142)|Melanoma(33;0.211)		Colorectal(1;0.000501)|READ - Rectum adenocarcinoma(2;0.00226)|BRCA - Breast invasive adenocarcinoma(31;0.246)		AGGAAGCGCTCCCTGATGGAGA	0.569000													19	26					0	0	0.004672	0	0
PCSK4	54760	broad.mit.edu	37	19	1487004	1487004	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:1487004C>T	uc002ltb.1	-	8	978	c.916G>A	c.(916-918)GAC>AAC	p.D306N	PCSK4_uc002lta.2_Missense_Mutation_p.D118N	NM_017573	NP_060043	Q6UW60	PCSK4_HUMAN	proprotein convertase subtilisin/kexin type 4	306	Catalytic (By similarity).				proteolysis	integral to membrane	serine-type endopeptidase activity				0		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTGCAGTTGTCGTAGTGCAGG	0.706000													15	40					0	0	0.003163	0	0
ZBTB7A	51341	broad.mit.edu	37	19	4048123	4048123	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:4048123G>A	uc002lzh.2	-	3	1457	c.1382C>T	c.(1381-1383)ACG>ATG	p.T461M	ZBTB7A_uc002lzi.2_Missense_Mutation_p.T461M	NM_015898	NP_056982	O95365	ZBT7A_HUMAN	zinc finger and BTB domain containing 7A	461					cell differentiation|multicellular organismal development|transcription, DNA-dependent	nucleus	DNA binding|histone acetyltransferase binding|zinc ion binding			pancreas(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.014)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGCAGGCCCGTGTGCACGCG	0.647000													23	45					0	0	0.012319	0	0
FSD1	79187	broad.mit.edu	37	19	4318373	4318373	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:4318373C>T	uc002lzy.2	+	9	983	c.830C>T	c.(829-831)TCC>TTC	p.S277F	FSD1_uc002lzz.2_Missense_Mutation_p.S277F|FSD1_uc002maa.2_Missense_Mutation_p.S90F	NM_024333	NP_077309	Q9BTV5	FSD1_HUMAN	fibronectin type III and SPRY domain containing	277	B30.2/SPRY.				cell division|mitosis	cleavage furrow|microtubule|microtubule organizing center|nucleus				skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.034)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGTCCACATCCCACCAGAAC	0.552000													9	30					0	0	0.006214	0	0
MUC16	94025	broad.mit.edu	37	19	9061148	9061148	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:9061148G>A	uc002mkp.2	-	3	26502	c.26298C>T	c.(26296-26298)TCC>TCT	p.S8766S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8768	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTTTCCGTGGAGATTTCTG	0.507000													20	53					0	0	0.003330	0	0
MUC16	94025	broad.mit.edu	37	19	9069754	9069754	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:9069754G>A	uc002mkp.2	-	3	17896	c.17692C>T	c.(17692-17694)CCA>TCA	p.P5898S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5900	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTGAGTGTGGAAATCTCTGA	0.517000													26	75					0	0	0.008361	0	0
CYP4F12	66002	broad.mit.edu	37	19	15794562	15794562	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:15794562C>T	uc002nbl.2	+	7	968	c.907C>T	c.(907-909)CTG>TTG	p.L303L		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					TGATGTGCTTCTGCTGAGCAA	0.438000													25	86					0	0	0.006320	0	0
OR10H3	26532	broad.mit.edu	37	19	15852388	15852388	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:15852388C>T	uc010xoq.1	+	1	186	c.186C>T	c.(184-186)CTC>CTT	p.L62L		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCATGTACCTCTTCTTGTGTG	0.507000													45	184					0	0	0.014410	0	0
CPAMD8	27151	broad.mit.edu	37	19	17088240	17088240	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:17088240C>T	uc002nfb.2	-	15	1869	c.1837G>A	c.(1837-1839)GAG>AAG	p.E613K		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	566						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TCTCCATTCTCCCTGACGTAG	0.592000													14	50					0	0	0.004990	0	0
FKBP8	23770	broad.mit.edu	37	19	18648543	18648543	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:18648543C>T	uc002njk.1	-	6	923	c.810G>A	c.(808-810)TTG>TTA	p.L270L	FKBP8_uc002nji.1_Silent_p.L108L|FKBP8_uc010xqi.1_Silent_p.L299L|FKBP8_uc002njj.1_Silent_p.L271L|FKBP8_uc002njl.1_Silent_p.L271L|FKBP8_uc002njm.1_Silent_p.L270L|FKBP8_uc010ebr.1_Silent_p.L109L|FKBP8_uc002njn.2_RNA	NM_012181	NP_036313	Q14318	FKBP8_HUMAN	FK506-binding protein 8	270					apoptosis|interspecies interaction between organisms|intracellular signal transduction|protein folding	integral to endoplasmic reticulum membrane|mitochondrial membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|protein binding			ovary(1)	1						ACTTCACCTTCAACTGCAGGA	0.642000													10	33					0	0	0.010729	0	0
ZNF208	7757	broad.mit.edu	37	19	22155388	22155388	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:22155388C>A	uc002nqp.2	-	5	2297	c.2148G>T	c.(2146-2148)AAG>AAT	p.K716N	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GGGTTGAGACCTTACTAAAGG	0.368000													6	41					0.00116845	0.00268111	0.001168	1	0
ZNF208	7757	broad.mit.edu	37	19	22156029	22156029	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:22156029G>A	uc002nqp.2	-	5	1656	c.1507C>T	c.(1507-1509)CAT>TAT	p.H503Y	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TCACCAGTATGAATTCTCTTA	0.358000													9	23					0	0	0.006214	0	0
ZNF676	163223	broad.mit.edu	37	19	22362910	22362910	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:22362910C>T	uc002nqs.1	-	3	1927	c.1609G>A	c.(1609-1611)GAA>AAA	p.E537K		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	537	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TTGCCACATTCTTCACATTTG	0.418000													7	43					0	0	0.004482	0	0
APLP1	333	broad.mit.edu	37	19	36365501	36365501	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:36365501C>T	uc002oce.2	+	9	1290	c.1152C>T	c.(1150-1152)ATC>ATT	p.I384I	APLP1_uc010xsz.1_Silent_p.I345I|APLP1_uc002ocf.2_Silent_p.I384I|APLP1_uc002ocg.2_Silent_p.I287I|APLP1_uc010xta.1_Silent_p.I378I	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	384	Extracellular (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TCGCCCTTATCAACGACCAGC	0.662000													21	74					0	0	0.004656	0	0
ZNF529	57711	broad.mit.edu	37	19	37037968	37037968	+	Silent	SNP	T	G	G			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:37037968T>G	uc002oeh.3	-	5	1694	c.1492A>C	c.(1492-1494)AGA>CGA	p.R498R	ZNF529_uc010xth.1_Silent_p.R498R|ZNF529_uc010xti.1_Silent_p.R480R|ZNF529_uc002oeg.3_Silent_p.R393R	NM_020951	NP_066002	Q6P280	ZN529_HUMAN	zinc finger protein 529 isoform a	465	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1	Esophageal squamous(110;0.198)					GTATGAATTCTCTGATGTTCT	0.398000													8	22					0	0	0.003080	0	0
FCGBP	8857	broad.mit.edu	37	19	40411742	40411742	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:40411742C>T	uc002omp.3	-	7	3894	c.3886G>A	c.(3886-3888)GAG>AAG	p.E1296K		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1296	VWFD 3.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GCCACGTTCTCCTGCAGGACG	0.632000													14	42					0	0	0.004656	0	0
PRX	57716	broad.mit.edu	37	19	40901099	40901099	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:40901099C>T	uc002onr.2	-	7	3429	c.3160G>A	c.(3160-3162)GGG>AGG	p.G1054R	PRX_uc002onq.2_Missense_Mutation_p.G915R|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	1054					axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TTCACCCTCCCATCCCAGCCC	0.612000													8	23					0	0	0.004482	0	0
SYMPK	8189	broad.mit.edu	37	19	46355638	46355638	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:46355638G>A	uc002pdn.2	-	5	476	c.231C>T	c.(229-231)ATC>ATT	p.I77I	SYMPK_uc002pdo.1_Silent_p.I77I|SYMPK_uc002pdp.1_Silent_p.I77I|SYMPK_uc002pdq.1_Silent_p.I77I	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	77	Interaction with HSF1.				cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		GGAATGCGATGATCTCCTGCC	0.527000													28	60					0	0	0.005443	0	0
KLK2	3817	broad.mit.edu	37	19	51379954	51379954	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:51379954G>A	uc002ptv.2	+	3	474	c.433G>A	c.(433-435)GAG>AAG	p.E145K	KLK2_uc010eog.2_Missense_Mutation_p.E43K|KLK2_uc010yck.1_Missense_Mutation_p.E145K|KLK2_uc002ptu.2_Missense_Mutation_p.E145K|KLK2_uc002ptt.2_RNA|KLK2_uc010ycl.1_Missense_Mutation_p.E128K|KLK2_uc010ycm.1_Missense_Mutation_p.E43K|KLK2_uc010eoh.2_Missense_Mutation_p.E43K	NM_005551	NP_005542	P20151	KLK2_HUMAN	kallikrein 2, prostatic isoform 1	145	Peptidase S1.				proteolysis		serine-type endopeptidase activity			ovary(1)|skin(1)	2		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.00871)		GCCCACCCAGGAGCCAGCACT	0.617000			T	ETV4	prostate								11	16					0	0	0.010729	0	0
MIR518A1	574488	broad.mit.edu	37	19	54234338	54234338	+	RNA	SNP	T	G	G			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:54234338T>G	hsa-mir-518a-1|MI0003170	+			c.79T>G																				0						TGGATTACGGTTTGAGAAAAA	0.478000													13	54					0	0	0.013537	0	0
MIR522	574495	broad.mit.edu	37	19	54254479	54254479	+	RNA	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:54254479C>T	hsa-mir-522|MI0003177	+			c.15C>T			MIR519A1_hsa-mir-519a-1|MI0003178_5'Flank|MIR527_hsa-mir-527|MI0003179_5'Flank																	0						AGGCTGTGTCCCTCTAGAGGG	0.408000													37	53					0	0	0.008740	0	0
MIR1283-2	100302205	broad.mit.edu	37	19	54261547	54261547	+	RNA	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:54261547C>T	hsa-mir-1283-2|MI0006430	+			c.62C>T																				0						GAAATCGCTTCCCTTTGGAGT	0.448000													12	58					0	0	0.013537	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55331168	55331168	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:55331168G>A	uc002qhk.3	+	4	419	c.356G>A	c.(355-357)GGA>GAA	p.G119E	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Missense_Mutation_p.G61E|KIR3DL1_uc010esf.2_Missense_Mutation_p.G24E|KIR3DL1_uc010yfo.1_Missense_Mutation_p.G61E|KIR3DL1_uc002qhl.3_Missense_Mutation_p.G119E	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	119	Extracellular (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		CTCTTTCTAGGAAACCACAGA	0.502000													16	42					0	0	0.009535	0	0
FCAR	2204	broad.mit.edu	37	19	55401052	55401052	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:55401052C>T	uc002qhr.1	+	5	884	c.687C>T	c.(685-687)ATC>ATT	p.I229I	FCAR_uc002qhs.1_RNA|FCAR_uc002qht.1_Silent_p.I180I|FCAR_uc010esi.1_Silent_p.I106I|FCAR_uc002qhu.1_Silent_p.I133I|FCAR_uc002qhv.1_Silent_p.I207I|FCAR_uc002qhw.1_Silent_p.I217I|FCAR_uc002qhx.1_Silent_p.I121I|FCAR_uc002qhy.1_Silent_p.I195I|FCAR_uc002qhz.1_Missense_Mutation_p.P193S|FCAR_uc002qia.1_Silent_p.I120I	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	229	Helical; (Potential).				immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		AGAACTTGATCCGCATGGCCG	0.532000													63	307					0	0	0.014410	0	0
PTPRH	5794	broad.mit.edu	37	19	55715188	55715188	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:55715188C>T	uc002qjq.2	-	5	921	c.848G>A	c.(847-849)GGA>GAA	p.G283E	PTPRH_uc010esv.2_Intron|PTPRH_uc002qjs.2_Missense_Mutation_p.G290E	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	283	Extracellular (Potential).|Fibronectin type-III 3.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		GCTATTTACTCCGTCTTTCTC	0.488000													21	70					0	0	0.014323	0	0
PTPRH	5794	broad.mit.edu	37	19	55716753	55716753	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:55716753G>A	uc002qjq.2	-	4	633	c.560C>T	c.(559-561)TCC>TTC	p.S187F	PTPRH_uc010esv.2_Intron|PTPRH_uc002qjs.2_Missense_Mutation_p.S194F	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	187	Fibronectin type-III 2.|Extracellular (Potential).				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		CACCCACATGGAAAACGCATA	0.507000													26	81					0	0	0.004656	0	0
NLRP13	126204	broad.mit.edu	37	19	56443602	56443602	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:56443602G>A	uc010ygg.1	-	1	101	c.76C>T	c.(76-78)CAG>TAG	p.Q26*		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	26	DAPIN.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		AGCTGATACTGATCCAGGGCC	0.552000													16	52					0	0	0.007413	0	0
ZNF418	147686	broad.mit.edu	37	19	58437835	58437835	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr19:58437835C>G	uc002qqs.1	-	4	2006	c.1714G>C	c.(1714-1716)GGG>CGG	p.G572R	ZNF418_uc010yhn.1_RNA|ZNF418_uc010yho.1_Missense_Mutation_p.G487R	NM_133460	NP_597717	Q8TF45	ZN418_HUMAN	zinc finger protein 418	572					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0158)		AAGAATTTCCCACATTCTCTG	0.443000													16	31					0	0	0.004007	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17698712	17698712	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:17698712G>A	uc002rcl.1	-	1	995	c.971C>T	c.(970-972)TCC>TTC	p.S324F	RAD51AP2_uc010exn.1_Missense_Mutation_p.S315F	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	324										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					ATAACATTTGGAAAAAATGTT	0.343000													12	31					0	0	0.002450	0	0
APOB	338	broad.mit.edu	37	2	21235442	21235442	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:21235442G>A	uc002red.2	-	26	4426	c.4298C>T	c.(4297-4299)TCG>TTG	p.S1433L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1433					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTTGATATTCGAATCTAGAAA	0.368000													112	379					0	0	0.014410	0	0
GTF3C2	2976	broad.mit.edu	37	2	27552143	27552143	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:27552143G>A	uc002rjv.1	-	15	2247	c.1884C>T	c.(1882-1884)TTC>TTT	p.F628F	GTF3C2_uc010eyy.1_Silent_p.F83F|GTF3C2_uc002rju.1_Silent_p.F639F|GTF3C2_uc002rjw.1_Silent_p.F628F	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	628	WD 3.					transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAGAGACAAGGAAATGGCTGT	0.488000													83	224					0	0	0.014410	0	0
PPM1G	5496	broad.mit.edu	37	2	27610020	27610020	+	Silent	SNP	A	G	G			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:27610020A>G	uc002rkl.2	-	3	233	c.126T>C	c.(124-126)GCT>GCC	p.A42A	PPM1G_uc002rkm.2_5'UTR	NM_002707	NP_002698	O15355	PPM1G_HUMAN	protein phosphatase 1G	42					cell cycle arrest|protein dephosphorylation	cytoplasm|nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TACAGTTGTGAGCATCCTAGG	0.438000													3	20					0	0	0.009096	0	0
C2orf16	84226	broad.mit.edu	37	2	27801614	27801614	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:27801614G>A	uc002rkz.3	+	1	2226	c.2175G>A	c.(2173-2175)GGG>GGA	p.G725G		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	725										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					TACAAGTAGGGACTGACTTCT	0.433000													17	51					0	0	0.004990	0	0
RAB11FIP5	26056	broad.mit.edu	37	2	73316099	73316099	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:73316099G>A	uc002siu.3	-	2	1017	c.776C>T	c.(775-777)TCC>TTC	p.S259F	RAB11FIP5_uc002sit.3_Missense_Mutation_p.S181F	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	259					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						GCTGGCTGAGGACAGGGTGCT	0.637000													11	32					0	0	0.013537	0	0
REG1B	5968	broad.mit.edu	37	2	79312666	79312666	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:79312666G>A	uc002sny.2	-	5	497	c.385C>T	c.(385-387)CCG>TCG	p.P129S	REG1B_uc010ffv.1_3'UTR	NM_006507	NP_006498	P48304	REG1B_HUMAN	regenerating islet-derived 1 beta precursor	129	C-type lectin.				cell proliferation	extracellular region	sugar binding			central_nervous_system(1)|skin(1)	2						GCACTGCTCGGGGATCCAGTG	0.562000													14	55					0	0	0.004990	0	0
Unknown	0	broad.mit.edu	37	2	89417258	89417258	+	RNA	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:89417258G>A	uc010ytr.1	-	41		c.4469C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CCTTACCTGGGAACCAGAGCA	0.507000													7	166					0	0	0.004482	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95515008	95515008	+	RNA	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:95515008C>T	uc010fhp.2	-	4		c.443G>A				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						CCACCATTTTCTCTTTCTTGC	0.303000													28	141					0	0	0.004878	0	0
VWA3B	200403	broad.mit.edu	37	2	98810890	98810890	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:98810890G>A	uc002syo.2	+	12	1936	c.1672G>A	c.(1672-1674)GAA>AAA	p.E558K	VWA3B_uc010yvh.1_Missense_Mutation_p.E408K|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Missense_Mutation_p.E77K|VWA3B_uc002sym.2_Missense_Mutation_p.E558K|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.E215K|VWA3B_uc002syp.1_5'UTR	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	558	VWFA.									ovary(3)|large_intestine(2)|skin(1)	6						TGCTTGGCGGGAACAACTTGC	0.383000													47	128					0	0	0.014410	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459793	107459793	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:107459793G>A	uc002tdq.2	-	2	760	c.641C>T	c.(640-642)TCC>TTC	p.S214F	ST6GAL2_uc002tdr.2_Missense_Mutation_p.S214F|ST6GAL2_uc002tds.3_Missense_Mutation_p.S214F	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	214	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CAGCATTTTGGAAGAGACGTT	0.637000													10	23					0	0	0.008291	0	0
CXCR4	7852	broad.mit.edu	37	2	136873378	136873378	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:136873378G>A	uc002tuz.2	-	2	215	c.120C>T	c.(118-120)TTC>TTT	p.F40F	CXCR4_uc002tuy.2_Silent_p.F44F|CXCR4_uc010fnk.2_Silent_p.F25F	NM_003467	NP_003458	P61073	CXCR4_HUMAN	chemokine (C-X-C motif) receptor 4 isoform b	40	Helical; Name=1.				activation of MAPK activity|apoptosis|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|inflammatory response|initiation of viral infection|regulation of chemotaxis|response to hypoxia|response to virus	cell leading edge|cell surface|cytoplasmic membrane-bounded vesicle|integral to membrane|plasma membrane	actin binding|C-X-C chemokine receptor activity|coreceptor activity|myosin light chain binding|ubiquitin binding|ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.155)	Framycetin(DB00452)	TGGTGGGCAGGAAGATTTTAT	0.453000													29	56					0	0	0.006320	0	0
THSD7B	80731	broad.mit.edu	37	2	138413086	138413086	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:138413086G>A	uc002tva.1	+	21	3874	c.3874G>A	c.(3874-3876)GAA>AAA	p.E1292K	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AGACTGTGGGGAAGGAGTTCA	0.478000													5	11					0	0	0.001984	0	0
LRP1B	53353	broad.mit.edu	37	2	141739753	141739753	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:141739753G>T	uc002tvj.1	-	18	3835	c.2863C>A	c.(2863-2865)CAG>AAG	p.Q955K	LRP1B_uc010fnl.1_Missense_Mutation_p.Q137K	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	955	Extracellular (Potential).|LDL-receptor class A 5.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCATCTGTCTGGTCACCACAG	0.468000										TSP Lung(27;0.18)			8	42					0.000157383	0.000365078	0.003080	1	0
SCN3A	6328	broad.mit.edu	37	2	165987886	165987886	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:165987886G>A	uc002ucx.2	-	16	2925	c.2433C>T	c.(2431-2433)ATC>ATT	p.I811I	SCN3A_uc002ucy.2_Silent_p.I762I|SCN3A_uc002ucz.2_Silent_p.I762I|SCN3A_uc002uda.1_Silent_p.I631I|SCN3A_uc002udb.1_Silent_p.I631I	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	811	Helical; Name=S2 of repeat II; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	CCATGGCAATGATCTTGAGAA	0.388000													21	57					0	0	0.002780	0	0
SCN1A	6323	broad.mit.edu	37	2	166848050	166848050	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:166848050C>T	uc010zcz.1	-	26	5720	c.5702G>A	c.(5701-5703)CGA>CAA	p.R1901Q		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1912						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CTCTTGTTTTCGTTTTAAAGT	0.413000													12	47					0	0	0.013537	0	0
GAD1	2571	broad.mit.edu	37	2	171715347	171715347	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:171715347C>T	uc002ugi.2	+	16	1977	c.1555C>T	c.(1555-1557)CCA>TCA	p.P519S	GAD1_uc010fqc.2_Missense_Mutation_p.P138S	NM_000817	NP_000808	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 isoform GAD67	519					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	TTGGTATATTCCACAAAGCCT	0.428000													9	39					0	0	0.010729	0	0
TTN	7273	broad.mit.edu	37	2	179396030	179396030	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:179396030C>T	uc010zfg.1	-	307	97832	c.97608G>A	c.(97606-97608)ATG>ATA	p.M32536I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.M26231I|TTN_uc010zfi.1_Missense_Mutation_p.M26164I|TTN_uc010zfj.1_Missense_Mutation_p.M26039I|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33463							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGCACTTTTCATTTCTGCAG	0.438000													31	89					0	0	0.007291	0	0
TTN	7273	broad.mit.edu	37	2	179457686	179457686	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:179457686C>T	uc010zfg.1	-	249	51680	c.51456G>A	c.(51454-51456)CAG>CAA	p.Q17152Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.Q10847Q|TTN_uc010zfi.1_Silent_p.Q10780Q|TTN_uc010zfj.1_Silent_p.Q10655Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18079							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCCAACTTTCTGGTACTCAA	0.448000													52	149					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179528362	179528362	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:179528362G>A	uc010zfk.1	-	16	1510	c.962C>T	c.(961-963)CCT>CTT	p.P321L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11533							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACCTTTAACAGGTGGGACTTC	0.383000													61	171					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179584174	179584174	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:179584174C>T	uc010zfg.1	-	80	20435	c.20211G>A	c.(20209-20211)CGG>CGA	p.R6737R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.R3398R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7664							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAGGCACAATCCGATCTATGT	0.473000													17	59					0	0	0.006122	0	0
TTN	7273	broad.mit.edu	37	2	179588856	179588856	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:179588856G>A	uc010zfg.1	-	70	17622	c.17398C>T	c.(17398-17400)CCC>TCC	p.P5800S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P2461S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6727							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGAAAGAGGGAGGAACTGCT	0.418000													7	11					0	0	0.003080	0	0
SSFA2	6744	broad.mit.edu	37	2	182780777	182780777	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:182780777C>T	uc002uoi.2	+	11	2732	c.2410C>T	c.(2410-2412)CCA>TCA	p.P804S	SSFA2_uc002uoh.2_Missense_Mutation_p.P804S|SSFA2_uc002uoj.2_Missense_Mutation_p.P804S|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_Missense_Mutation_p.P651S|SSFA2_uc002uol.2_Missense_Mutation_p.P651S|SSFA2_uc002uom.2_Missense_Mutation_p.P272S	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	804						cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			TTTCATCTCTCCATCATCTGT	0.502000													7	20					0	0	0.004482	0	0
NRP2	8828	broad.mit.edu	37	2	206608069	206608069	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:206608069C>T	uc002vaw.2	+	9	2225	c.1434C>T	c.(1432-1434)ATC>ATT	p.I478I	NRP2_uc002vat.2_Silent_p.I478I|NRP2_uc002vau.2_Silent_p.I478I|NRP2_uc002vav.2_Silent_p.I478I|NRP2_uc002vax.2_Silent_p.I478I|NRP2_uc002vay.2_Silent_p.I478I|NRP2_uc010fud.2_Silent_p.I478I	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	478	Extracellular (Potential).|F5/8 type C 2.				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TCCCTCGAATCCCTCAGGCCC	0.617000													19	55					0	0	0.006122	0	0
ERBB4	2066	broad.mit.edu	37	2	212568876	212568876	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:212568876G>A	uc002veg.1	-	11	1340	c.1242C>T	c.(1240-1242)TTC>TTT	p.F414F	ERBB4_uc002veh.1_Silent_p.F414F|ERBB4_uc010zji.1_Silent_p.F414F|ERBB4_uc010zjj.1_Silent_p.F414F|ERBB4_uc010fut.1_Silent_p.F414F	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	414	Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		AAAAAACACTGAAGTCAGTCA	0.388000										TSP Lung(8;0.080)			21	55					0	0	0.003954	0	0
ABCA12	26154	broad.mit.edu	37	2	215854087	215854087	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:215854087G>A	uc002vew.2	-	26	4015	c.3795C>T	c.(3793-3795)TTC>TTT	p.F1265F	ABCA12_uc002vev.2_Silent_p.F947F|ABCA12_uc010zjn.1_Silent_p.F192F	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1265	Helical; (Potential).				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		AAGCAATAAGGAAATAAATGA	0.403000													6	30					0	0	0.001168	0	0
VIL1	7429	broad.mit.edu	37	2	219305465	219305465	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:219305465G>A	uc002via.2	+	19	2315	c.2250G>A	c.(2248-2250)GTG>GTA	p.V750V	VIL1_uc010zke.1_Silent_p.V439V|VIL1_uc002vib.2_Silent_p.V750V	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	750	Headpiece.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCCCCAAAGTGGACGTGTTCA	0.542000													25	52					0	0	0.006320	0	0
COL4A3	1285	broad.mit.edu	37	2	228118856	228118856	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:228118856G>A	uc002vom.1	+	14	956	c.794G>A	c.(793-795)GGA>GAA	p.G265E	COL4A3_uc002von.1_Missense_Mutation_p.G265E|COL4A3_uc002voo.1_Missense_Mutation_p.G265E|COL4A3_uc002vop.1_Missense_Mutation_p.G265E|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	265	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GGAGACAAGGGAGCAATGGGC	0.423000													17	61					0	0	0.010504	0	0
TGM3	7053	broad.mit.edu	37	20	2297783	2297783	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr20:2297783C>T	uc002wfx.3	+	6	836	c.739C>T	c.(739-741)CCA>TCA	p.P247S		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	247					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	TGGCCGGGACCCAAGGAGCTG	0.547000													11	66					0	0	0.008291	0	0
TGM6	343641	broad.mit.edu	37	20	2380983	2380983	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr20:2380983C>T	uc002wfy.1	+	7	943	c.882C>T	c.(880-882)GTC>GTT	p.V294V	TGM6_uc010gal.1_Silent_p.V294V	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	294					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	CCACACGGGTCGTGTCCAACT	0.617000													21	36					0	0	0.012319	0	0
HAO1	54363	broad.mit.edu	37	20	7895041	7895041	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr20:7895041C>T	uc002wmw.1	-	3	339	c.315G>A	c.(313-315)ATG>ATA	p.M105I	HAO1_uc010gbu.2_Missense_Mutation_p.M105I	NM_017545	NP_060015	Q9UJM8	HAOX1_HUMAN	hydroxyacid oxidase 1	105	FMN hydroxy acid dehydrogenase.				cellular nitrogen compound metabolic process|fatty acid alpha-oxidation|glycolate catabolic process|glyoxylate metabolic process	peroxisomal matrix	FMN binding|glycolate oxidase activity|glyoxylate oxidase activity			ovary(3)	3						AACTCAACATCATGCCCGTTC	0.517000													10	28					0	0	0.010729	0	0
FRG1B	284802	broad.mit.edu	37	20	29628263	29628263	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr20:29628263A>G	uc010ztl.1	+	3	207	c.175A>G	c.(175-177)ATT>GTT	p.I59V	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.I11V					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						TAGCTGCTTTATTAGATGCAA	0.363000													7	51					0	0	0.004482	0	0
PLCG1	5335	broad.mit.edu	37	20	39792045	39792045	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr20:39792045G>A	uc002xjp.1	+	9	938	c.817G>A	c.(817-819)GTG>ATG	p.V273M	PLCG1_uc002xjo.1_Missense_Mutation_p.V273M|PLCG1_uc010zwe.1_5'Flank|PLCG1_uc010ggf.2_5'Flank	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	273					activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				TCGCCTCCAGGTGCAGGAGTT	0.582000													14	48					0	0	0.004007	0	0
DSCAM	1826	broad.mit.edu	37	21	42080489	42080489	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr21:42080489G>A	uc002yyq.1	-	2	704	c.252C>T	c.(250-252)TTC>TTT	p.F84F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	84	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GAGGGAAGGGGAAAATTTGGA	0.498000													18	46					0	0	0.007413	0	0
KRTAP10-1	386677	broad.mit.edu	37	21	45959675	45959675	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr21:45959675G>A	uc002zfh.1	-	1	404	c.359C>T	c.(358-360)TCA>TTA	p.S120L	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198691	NP_941964	P60331	KR101_HUMAN	keratin associated protein 10-1	120	24 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						CTGGCAGCATGAAGAGGAATC	0.323000													13	42					0	0	0.003163	0	0
ZNF280A	129025	broad.mit.edu	37	22	22869886	22869886	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr22:22869886C>T	uc002zwe.2	-	2	322	c.69G>A	c.(67-69)AGG>AGA	p.R23R	LOC96610_uc011aim.1_Intron	NM_080740	NP_542778	P59817	Z280A_HUMAN	zinc finger protein 280A	23					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		CATCCTCCTCCCTTTGTTTGG	0.383000													15	63					0	0	0.004007	0	0
MYO18B	84700	broad.mit.edu	37	22	26168458	26168458	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr22:26168458C>T	uc003abz.1	+	7	2100	c.1850C>T	c.(1849-1851)TCG>TTG	p.S617L	MYO18B_uc003aca.1_Missense_Mutation_p.S498L|MYO18B_uc010guy.1_Missense_Mutation_p.S498L|MYO18B_uc010guz.1_Missense_Mutation_p.S498L|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_Missense_Mutation_p.S130L	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	617	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CGGGGGCCCTCGGTGCCTTCT	0.642000													5	26					0	0	0.000602	0	0
TCN2	6948	broad.mit.edu	37	22	31011344	31011344	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr22:31011344C>T	uc003aip.1	+	5	795	c.637C>T	c.(637-639)CCT>TCT	p.P213S	TCN2_uc003aiq.1_Missense_Mutation_p.P209S|TCN2_uc003air.1_Missense_Mutation_p.P186S	NM_000355	NP_000346	P20062	TCO2_HUMAN	transcobalamin II precursor	213					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular space	cobalamin binding			central_nervous_system(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	AAACTTCAACCCTGGTCGGAG	0.557000													14	47					0	0	0.002450	0	0
TRIOBP	11078	broad.mit.edu	37	22	38119627	38119627	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr22:38119627G>A	uc003atr.2	+	7	1335	c.1064G>A	c.(1063-1065)AGA>AAA	p.R355K	TRIOBP_uc003atu.2_Missense_Mutation_p.R183K|TRIOBP_uc003atq.1_Missense_Mutation_p.R355K|TRIOBP_uc003ats.1_Missense_Mutation_p.R183K	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	355					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GATAACCCCAGAACCTCTTCT	0.582000													24	82					0	0	0.003330	0	0
MKL1	57591	broad.mit.edu	37	22	40819558	40819558	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr22:40819558G>A	uc003ayv.1	-	6	816	c.609C>T	c.(607-609)TCC>TCT	p.S203S	MKL1_uc003ayw.1_Silent_p.S203S|MKL1_uc010gye.1_Silent_p.S203S|MKL1_uc010gyf.1_Intron	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	203	Mediates interaction with SCAI and ACTB (By similarity).				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GTGTGGGGGTGGACTTGGCAG	0.572000			T	RBM15	acute megakaryocytic leukemia								14	35					0	0	0.001855	0	0
ZBED4	9889	broad.mit.edu	37	22	50277928	50277928	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr22:50277928C>G	uc003bix.2	+	2	1088	c.618C>G	c.(616-618)ATC>ATG	p.I206M		NM_014838	NP_055653	O75132	ZBED4_HUMAN	zinc finger, BED-type containing 4	206						cytoplasm|nucleus	DNA binding|metal ion binding|protein dimerization activity			ovary(2)	2		all_cancers(38;8.58e-10)|all_epithelial(38;1.15e-08)|all_lung(38;0.000109)|Lung NSC(38;0.0018)|Breast(42;0.00191)|Ovarian(80;0.0164)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.168)|BRCA - Breast invasive adenocarcinoma(115;0.2)|LUAD - Lung adenocarcinoma(64;0.247)		TCTCACCCATCAAACTTGTCC	0.547000													12	28					0	0	0.001855	0	0
PLXNB2	23654	broad.mit.edu	37	22	50722087	50722087	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr22:50722087G>A	uc003bkv.3	-	15	2620	c.2514C>T	c.(2512-2514)ATC>ATT	p.I838I	PLXNB2_uc003bkt.1_5'Flank|PLXNB2_uc003bku.1_5'Flank	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	838	Extracellular (Potential).|IPT/TIG 1.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CGGCCACAGAGATCCTCTGGA	0.642000													5	17					0	0	0.000602	0	0
SAPS2	9701	broad.mit.edu	37	22	50869685	50869686	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr22:50869685_50869686CC>TT	uc003blb.1	+	12	1631_1632	c.1209_1210CC>TT	c.(1207-1212)GCCCGT>GCTTGT	p.R404C	SAPS2_uc003bky.1_Missense_Mutation_p.R404C|SAPS2_uc003bkz.1_Missense_Mutation_p.R404C|SAPS2_uc003blc.2_Missense_Mutation_p.R404C|SAPS2_uc003bla.1_Missense_Mutation_p.R405C|SAPS2_uc003bld.1_5'UTR	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	404						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		CCCACGCTGCCCGTGAGGAGAG	0.574000													27	50					0	0	0.004672	0	0
RABL2B	11158	broad.mit.edu	37	22	51208364	51208364	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr22:51208364G>A	uc003bno.1	-	6	594	c.378C>T	c.(376-378)ATC>ATT	p.I126I	RPL23AP82_uc011asd.1_Intron|RPL23AP82_uc003bni.2_Intron|RABL2B_uc011ase.1_Intron|RABL2B_uc003bnm.1_Silent_p.I126I|RABL2B_uc011asf.1_Silent_p.I126I|RABL2B_uc003bnn.1_Silent_p.I126I|RABL2B_uc003bnk.1_Silent_p.I126I|RABL2B_uc011asg.1_Silent_p.I126I|RABL2B_uc003bnl.1_Silent_p.I126I|RABL2B_uc011ash.1_Intron	NM_001130922	NP_001124394	Q9UNT1	RBL2B_HUMAN	RAB, member of RAS oncogene family-like 2B	126					small GTPase mediated signal transduction		GTP binding|GTPase activity				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.0539)|LUAD - Lung adenocarcinoma(64;0.247)		CGATGCATGGGATCTCTGGCC	0.522000													10	30					0	0	0.010729	0	0
PRRT3	285368	broad.mit.edu	37	3	9991656	9991656	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr3:9991656C>T	uc003bul.2	-	2	274	c.144G>A	c.(142-144)AAG>AAA	p.K48K	CIDEC_uc003bto.2_Intron|PRRT3_uc003buk.2_RNA|PRRT3_uc003bum.2_Silent_p.K48K	NM_207351	NP_997234	Q5FWE3	PRRT3_HUMAN	proline-rich transmembrane protein 3 precursor	48	Extracellular (Potential).					integral to membrane					0						CCACAGAGCCCTTGGGGTGGG	0.632000													11	36					0	0	0.010729	0	0
PPARG	5468	broad.mit.edu	37	3	12458329	12458329	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr3:12458329C>T	uc003bwx.2	+	6	1037	c.946C>T	c.(946-948)CGC>TGC	p.R316C	PPARG_uc003bwr.2_Missense_Mutation_p.R288C|PPARG_uc003bws.2_Missense_Mutation_p.R288C|PPARG_uc003bwu.2_Missense_Mutation_p.R288C|PPARG_uc003bwv.2_Intron|PPARG_uc010hea.1_RNA	NM_015869	NP_056953	P37231	PPARG_HUMAN	peroxisome proliferative activated receptor	316					activation of caspase activity|cell fate commitment|cell maturation|cellular response to insulin stimulus|epithelial cell differentiation|glucose homeostasis|induction of apoptosis|innate immune response|lipid homeostasis|lipoprotein transport|long-chain fatty acid transport|low-density lipoprotein particle receptor biosynthetic process|monocyte differentiation|negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|placenta development|positive regulation of fat cell differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to lipid|response to low-density lipoprotein particle stimulus|white fat cell differentiation	cytosol|nucleoplasm	activating transcription factor binding|arachidonic acid binding|drug binding|enzyme binding|prostaglandin receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|kidney(1)	2					Atorvastatin(DB01076)|Icosapent(DB00159)|Pioglitazone(DB01132)|Rosiglitazone(DB00412)|Troglitazone(DB00197)	CTGCCAGTTTCGCTCCGTGGA	0.478000			T	PAX8	follicular thyroid		Insulin resistance ; lipodystrophy|familial partial L;diabetes mellitus|insulin-resistantI|with acanthosis nigricans and hypertension						111	265					0	0	0.014410	0	0
CAMKV	79012	broad.mit.edu	37	3	49899749	49899749	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr3:49899749C>T	uc003cxt.1	-	2	266	c.73G>A	c.(73-75)GAT>AAT	p.D25N	CAMKV_uc011bcy.1_Intron|CAMKV_uc003cxv.1_Missense_Mutation_p.D25N|CAMKV_uc003cxw.1_5'UTR|CAMKV_uc003cxx.1_5'UTR|CAMKV_uc003cxu.2_Missense_Mutation_p.D25N|CAMKV_uc011bcz.1_Missense_Mutation_p.M1I|CAMKV_uc011bda.1_Missense_Mutation_p.D25N|CAMKV_uc011bdb.1_RNA	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	25	Protein kinase.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		TGTCCCAAATCATATCTGTCA	0.577000													8	30					0	0	0.003080	0	0
GRAMD1C	54762	broad.mit.edu	37	3	113658823	113658823	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr3:113658823C>T	uc003eaq.3	+	16	1858	c.1782C>T	c.(1780-1782)CTC>CTT	p.L594L	GRAMD1C_uc011bil.1_RNA|GRAMD1C_uc003ear.2_Silent_p.L427L|GRAMD1C_uc003eas.2_Silent_p.L389L|GRAMD1C_uc003eat.2_Silent_p.L253L	NM_017577	NP_060047	Q8IYS0	GRM1C_HUMAN	GRAM domain containing 1C	594						integral to membrane				ovary(2)|skin(1)	3						GTCTCCGCCTCCAAGAAGAGA	0.378000													20	32					0	0	0.012319	0	0
STXBP5L	9515	broad.mit.edu	37	3	120957823	120957823	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr3:120957823C>T	uc003eec.3	+	13	1330	c.1190C>T	c.(1189-1191)CCA>CTA	p.P397L	STXBP5L_uc011bji.1_Missense_Mutation_p.P397L	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	397					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		ATTAGTTTTCCAATCTTTGAA	0.308000													7	26					0	0	0.003080	0	0
STXBP5L	9515	broad.mit.edu	37	3	121100318	121100318	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr3:121100318C>T	uc003eec.3	+	23	2738	c.2598C>T	c.(2596-2598)TCC>TCT	p.S866S	STXBP5L_uc011bji.1_Silent_p.S842S	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	866	WD 11.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		TAATCATCTCCTTAAACCTAC	0.413000													21	89					0	0	0.014323	0	0
FBXO40	51725	broad.mit.edu	37	3	121342139	121342139	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr3:121342139G>A	uc003eeg.2	+	3	2073	c.1863G>A	c.(1861-1863)TGG>TGA	p.W621*		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	621	F-box.				muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		TTTTGCAATGGAAGAAAAAGA	0.453000													12	43					0	0	0.013537	0	0
DNAJC13	23317	broad.mit.edu	37	3	132165331	132165331	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr3:132165331C>T	uc003eor.2	+	3	146	c.81C>T	c.(79-81)GTC>GTT	p.V27V	DNAJC13_uc010htq.1_Silent_p.V27V	NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	27							heat shock protein binding			ovary(1)|breast(1)	2						ATAAGCGTGTCTTTTCAGTTG	0.274000													11	28					0	0	0.002450	0	0
MECOM	2122	broad.mit.edu	37	3	169099072	169099072	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr3:169099072C>T	uc011bpj.1	-	2	681	c.278G>A	c.(277-279)GGA>GAA	p.G93E	MECOM_uc003ffl.2_Missense_Mutation_p.G65E|MECOM_uc011bpk.1_Intron|MECOM_uc010hwn.2_Missense_Mutation_p.G93E|MECOM_uc011bpl.1_Missense_Mutation_p.G93E	NM_004991	NP_004982	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform c	Error:Variant_position_missing_in_Q03112_after_alignment					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GGTCCATATTCCTAGTCCTGC	0.483000													24	72					0	0	0.002780	0	0
TRA2B	6434	broad.mit.edu	37	3	185638958	185638958	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr3:185638958C>A	uc003fpv.2	-	6	932	c.656G>T	c.(655-657)CGG>CTG	p.R219L	TRA2B_uc003fpt.2_RNA|TRA2B_uc003fpu.2_RNA|TRA2B_uc010hym.2_Missense_Mutation_p.R119L|TRA2B_uc003fpw.2_Missense_Mutation_p.R219L	NM_004593	NP_004584	P62995	TRA2B_HUMAN	splicing factor, arginine/serine-rich 10	219	Linker.				nuclear mRNA splicing, via spliceosome	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)	2						ATAGTAATCCCGACGGCGAGA	0.418000													8	376					0.00307968	0.00704757	0.003080	1	0
PYDC2	152138	broad.mit.edu	37	3	191178959	191178959	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr3:191178959C>A	uc011bso.1	+	1	8	c.8C>A	c.(7-9)TCT>TAT	p.S3Y		NM_001083308	NP_001076777	Q56P42	PYDC2_HUMAN	pyrin domain containing 2	3	DAPIN.					cytoplasm|nucleus					0						AAGATGGCATCTTCTGCAGAG	0.428000													17	58					8.10497e-08	1.90086e-07	0.010504	1	0
CPN2	1370	broad.mit.edu	37	3	194062482	194062482	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr3:194062482G>A	uc003fts.2	-	2	1040	c.950C>T	c.(949-951)TCC>TTC	p.S317F		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	317	LRR 10.				protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		GAGCATGAGGGAACGCAGGTT	0.572000													11	26					0	0	0.010729	0	0
NDST4	64579	broad.mit.edu	37	4	115858653	115858653	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr4:115858653C>T	uc003ibu.2	-	5	1907	c.1228G>A	c.(1228-1230)GGA>AGA	p.G410R	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	410	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		ATTGGTATTCCATGTTCCTAA	0.383000													6	18					0	0	0.001168	0	0
LARP1B	55132	broad.mit.edu	37	4	129043225	129043225	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr4:129043225C>T	uc003iga.2	+	11	1537	c.1406C>T	c.(1405-1407)ACC>ATC	p.T469I	LARP1B_uc003igc.2_5'UTR|LARP1B_uc003ifz.1_Missense_Mutation_p.T469I|LARP1B_uc003igb.1_Missense_Mutation_p.T184I	NM_018078	NP_060548	Q659C4	LAR1B_HUMAN	La ribonucleoprotein domain family member 2	469							RNA binding				0						CGAACAGGCACCCACATGTCT	0.373000													11	28					0	0	0.010729	0	0
FGG	2266	broad.mit.edu	37	4	155530802	155530802	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr4:155530802C>T	uc003ioj.2	-	6	787	c.646G>A	c.(646-648)GGA>AGA	p.G216R	FGG_uc003iog.2_Missense_Mutation_p.G216R|FGG_uc003ioh.2_Missense_Mutation_p.G224R|FGG_uc010ipx.2_Missense_Mutation_p.G44R|FGG_uc010ipy.2_5'UTR|FGG_uc003ioi.2_5'UTR|FGG_uc003iok.2_Missense_Mutation_p.G224R	NM_021870	NP_068656	P02679	FIBG_HUMAN	fibrinogen, gamma chain isoform gamma-B	216	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding				0	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	ACAGTCCATCCATTTCCAGAC	0.323000													20	23					0	0	0.003330	0	0
ADAM29	11086	broad.mit.edu	37	4	175897457	175897457	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr4:175897457G>A	uc003iuc.2	+	5	1451	c.781G>A	c.(781-783)GAT>AAT	p.D261N	ADAM29_uc003iud.2_Missense_Mutation_p.D261N|ADAM29_uc010irr.2_Missense_Mutation_p.D261N|ADAM29_uc011cki.1_Missense_Mutation_p.D261N	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	261	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		TGTAGTAGATGATGTAAGGAA	0.388000													25	45					0	0	0.003954	0	0
GPM6A	2823	broad.mit.edu	37	4	176594872	176594872	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr4:176594872C>T	uc003iuf.2	-	3	1150	c.346G>A	c.(346-348)GAT>AAT	p.D116N	GPM6A_uc011ckj.1_Missense_Mutation_p.D109N|GPM6A_uc003iug.2_Missense_Mutation_p.D116N|GPM6A_uc003iuh.2_Missense_Mutation_p.D105N	NM_201591	NP_963885	P51674	GPM6A_HUMAN	glycoprotein M6A isoform 2	116	Cytoplasmic (Potential).					cell surface|integral to membrane					0		Breast(14;7.35e-05)|Melanoma(52;0.00909)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;9.21e-19)|Epithelial(43;3.01e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.02e-09)|STAD - Stomach adenocarcinoma(60;0.00083)|GBM - Glioblastoma multiforme(59;0.00168)|LUSC - Lung squamous cell carcinoma(193;0.0388)		ATTTTGAAATCCCCATAGAGA	0.438000													6	20					0	0	0.001984	0	0
MARCH6	10299	broad.mit.edu	37	5	10415637	10415637	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:10415637G>A	uc003jet.1	+	21	2187	c.2004G>A	c.(2002-2004)GGG>GGA	p.G668G	MARCH6_uc011cmu.1_Silent_p.G620G|MARCH6_uc003jeu.1_Silent_p.G366G|MARCH6_uc011cmv.1_Silent_p.G563G	NM_005885	NP_005876	O60337	MARH6_HUMAN	membrane-associated ring finger (C3HC4) 6	668	Extracellular (Potential).				protein K48-linked ubiquitination	integral to endoplasmic reticulum membrane	ubiquitin conjugating enzyme binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|breast(1)	2						TTTGGACGGGGACTGCCAAAA	0.463000													29	81					0	0	0.008361	0	0
DNAH5	1767	broad.mit.edu	37	5	13766132	13766132	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:13766132C>T	uc003jfd.2	-	59	10096	c.10054G>A	c.(10054-10056)GAA>AAA	p.E3352K	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3352	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTTAAGGATTCCTGCCAGGAG	0.448000									Kartagener_syndrome				27	70					0	0	0.005443	0	0
DNAH5	1767	broad.mit.edu	37	5	13792187	13792187	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:13792187G>A	uc003jfd.2	-	50	8406	c.8364C>T	c.(8362-8364)TTC>TTT	p.F2788F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2788	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ACACATAATGGAATTTTGCAG	0.443000									Kartagener_syndrome				11	22					0	0	0.013537	0	0
IL7R	3575	broad.mit.edu	37	5	35876087	35876087	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:35876087T>A	uc003jjs.2	+	8	968	c.879T>A	c.(877-879)AAT>AAA	p.N293K	IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	293	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			CTGTGCAGAATTTAAATGTGA	0.413000													4	32					0	0	0.009096	0	0
C5orf42	65250	broad.mit.edu	37	5	37183400	37183400	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:37183400G>A	uc011cpa.1	-	26	5114	c.4883C>T	c.(4882-4884)TCA>TTA	p.S1628L	C5orf42_uc011coy.1_Missense_Mutation_p.S129L|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.S703L|C5orf42_uc011cpb.1_Missense_Mutation_p.S509L	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	1628										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			TGATTTTTCTGATTCATAGGA	0.348000													6	21					0	0	0.001168	0	0
ISL1	3670	broad.mit.edu	37	5	50685521	50685521	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:50685521G>A	uc003jor.2	+	4	1068	c.520G>A	c.(520-522)GTC>ATC	p.V174I		NM_002202	NP_002193	P61371	ISL1_HUMAN	islet-1	174					generation of precursor metabolites and energy|multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3		Lung NSC(810;0.000845)|Breast(144;0.0411)				GCGGCCCCACGTCCACAAGCA	0.627000													9	19					0	0	0.008291	0	0
BDP1	55814	broad.mit.edu	37	5	70782429	70782429	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:70782429C>T	uc003kbp.1	+	9	1451	c.1188C>T	c.(1186-1188)TCC>TCT	p.S396S	BDP1_uc003kbn.1_Silent_p.S396S|BDP1_uc003kbo.2_Silent_p.S396S	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	396	Required for phosphorylation by CSNK2A1.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		AGAAGAAATCCACCAAACCAC	0.318000													9	28					0	0	0.008291	0	0
CMYA5	202333	broad.mit.edu	37	5	79030721	79030721	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:79030721G>A	uc003kgc.2	+	2	6205	c.6133G>A	c.(6133-6135)GAA>AAA	p.E2045K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2045						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		ACTACCTCCTGAAAGATTCTT	0.438000													18	40					0	0	0.010504	0	0
GPR98	84059	broad.mit.edu	37	5	90004636	90004636	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:90004636G>A	uc003kju.2	+	39	8830	c.8734G>A	c.(8734-8736)GAT>AAT	p.D2912N	GPR98_uc003kjt.2_Missense_Mutation_p.D618N|GPR98_uc003kjv.2_Missense_Mutation_p.D512N	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2912	Calx-beta 20.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTTTCAGGATGATGTACCAGA	0.338000													17	54					0	0	0.004007	0	0
NR2F1	7025	broad.mit.edu	37	5	92923685	92923685	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:92923685G>A	uc003kkj.2	+	2	2213	c.526G>A	c.(526-528)GGG>AGG	p.G176R		NM_005654	NP_005645	P10589	COT1_HUMAN	nuclear receptor subfamily 2, group F, member 1	176					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			urinary_tract(1)|ovary(1)|lung(1)	3		all_cancers(142;1.62e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0416)|all cancers(79;9.57e-18)		ACTCACCAACGGGGACCCCCT	0.607000													15	37					0	0	0.002450	0	0
PCDHA1	56147	broad.mit.edu	37	5	140166099	140166099	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:140166099T>G	uc003lhb.2	+	1	224	c.224T>G	c.(223-225)CTG>CGG	p.L75R	PCDHA1_uc003lha.2_Missense_Mutation_p.L75R|PCDHA1_uc003lgz.2_Missense_Mutation_p.L75R	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	75	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGGACCTTCTGGAGGTAAAT	0.597000													20	61					0	0	0.012319	0	0
PCDHA9	9752	broad.mit.edu	37	5	140228284	140228284	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:140228284C>T	uc003lhu.2	+	1	928	c.204C>T	c.(202-204)TCC>TCT	p.S68S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Silent_p.S68S	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	68	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGTTGGATTCCAAAGGCCGCG	0.637000													26	89					0	0	0.004656	0	0
PCDHA13	56136	broad.mit.edu	37	5	140262123	140262123	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:140262123C>T	uc003lif.2	+	1	270	c.270C>T	c.(268-270)ATC>ATT	p.I90I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.I90I|PCDHA13_uc003lid.2_Silent_p.I90I	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	90	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTCTCGGATCGACCGCGAGG	0.592000													35	154					0	0	0.006999	0	0
PCDHB9	56127	broad.mit.edu	37	5	140568275	140568275	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:140568275G>A	uc003liw.1	+	3	1384	c.1384G>A	c.(1384-1386)GAG>AAG	p.E462K		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	462	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTTCGTCCGGGAGAACAACAG	0.627000													36	97					0	0	0.004289	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725195	140725195	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:140725195T>G	uc003ljm.1	+	1	1595	c.1595T>G	c.(1594-1596)GTG>GGG	p.V532G	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.V292G|PCDHGA3_uc011dap.1_Missense_Mutation_p.V532G	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	532	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGCTACTGGTGACAGCCAGC	0.572000													17	98					0	0	0.007413	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140767862	140767862	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:140767862C>T	uc003lkc.1	+	1	411	c.411C>T	c.(409-411)TCC>TCT	p.S137S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Silent_p.S137S	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	137	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCAAAATTCCTTTGAGCTGC	0.433000													8	17					0	0	0.008291	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140778105	140778105	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:140778105C>T	uc003lkf.1	+	1	411	c.411C>T	c.(409-411)TCC>TCT	p.S137S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Silent_p.S137S	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	137	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCAAAATTCCTTTGAGCTGC	0.408000													3	48					0	0	0.003080	0	0
GRXCR2	643226	broad.mit.edu	37	5	145246117	145246117	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:145246117C>T	uc003lns.1	-	2	511	c.511G>A	c.(511-513)GAT>AAT	p.D171N		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	171											0						AAAGGTCTATCGTGCTGGTCC	0.512000													18	82					0	0	0.007413	0	0
HAVCR1	26762	broad.mit.edu	37	5	156469681	156469681	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:156469681G>A	uc010jij.1	-	6	979	c.794C>T	c.(793-795)ACC>ATC	p.T265I	HAVCR1_uc011ddl.1_Missense_Mutation_p.T96I|HAVCR1_uc003lwi.2_Missense_Mutation_p.T265I	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	260	Extracellular (Potential).				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CTCTGTCACGGTGTCATTCCC	0.353000													67	239					0	0	0.014410	0	0
FAM71B	153745	broad.mit.edu	37	5	156590260	156590260	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:156590260T>C	uc003lwn.2	-	2	1116	c.1016A>G	c.(1015-1017)GAG>GGG	p.E339G		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	339						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GCTAATACCCTCTGAGGATAT	0.567000													103	335					0	0	0.014410	0	0
FAM71B	153745	broad.mit.edu	37	5	156590262	156590262	+	Silent	SNP	T	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:156590262T>A	uc003lwn.2	-	2	1114	c.1014A>T	c.(1012-1014)TCA>TCT	p.S338S		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	338						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TAATACCCTCTGAGGATATGT	0.572000													106	333					0	0	0.014410	0	0
NIPAL4	348938	broad.mit.edu	37	5	156899544	156899544	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:156899544C>T	uc003lwx.3	+	6	1093	c.977C>T	c.(976-978)CCC>CTC	p.P326L	ADAM19_uc003lww.1_Intron|NIPAL4_uc011ddq.1_Missense_Mutation_p.P307L	NM_001099287	NP_001092757	Q0D2K0	NIPA4_HUMAN	ichthyin protein	326	Helical; (Potential).					integral to membrane	receptor activity				0						CACCCGCTCCCCTACATCCTG	0.577000											OREG0016979	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	92					0	0	0.004878	0	0
WWC1	23286	broad.mit.edu	37	5	167882460	167882460	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr5:167882460C>T	uc003lzu.2	+	19	2851	c.2758C>T	c.(2758-2760)CGA>TGA	p.R920*	WWC1_uc003lzv.2_Nonsense_Mutation_p.R920*|WWC1_uc011den.1_Nonsense_Mutation_p.R920*|WWC1_uc003lzw.2_Nonsense_Mutation_p.R719*|WWC1_uc010jjf.1_Nonsense_Mutation_p.R192*	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	920	Interaction with histone H3.				cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		GCCATTTCTTCGAGGGAGCAC	0.642000													33	91					0	0	0.003271	0	0
HIST1H3C	8352	broad.mit.edu	37	6	26045867	26045867	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr6:26045867C>A	uc003nfv.2	+	1	229	c.229C>A	c.(229-231)CAG>AAG	p.Q77K	HIST1H2BB_uc003nfu.2_5'Flank	NM_003531	NP_003522	P68431	H31_HUMAN	histone cluster 1, H3c	77					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)	1						AGAAATCGCCCAGGACTTCAA	0.617000													9	38					0.000673444	0.00155791	0.008291	1	0
ZKSCAN3	80317	broad.mit.edu	37	6	28333993	28333993	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr6:28333993C>T	uc003nle.3	+	6	1764	c.1548C>T	c.(1546-1548)GGC>GGT	p.G516G	ZKSCAN3_uc010jrc.2_Silent_p.G516G|ZKSCAN3_uc003nlf.3_Silent_p.G368G|uc010jrd.2_5'Flank	NM_024493	NP_077819	Q9BRR0	ZKSC3_HUMAN	zinc finger with KRAB and SCAN domains 3	516	C2H2-type 7.				positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	chromatin binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						GTGGAAAAGGCTTCACCCGAA	0.433000													15	40					0	0	0.002450	0	0
SCAND3	114821	broad.mit.edu	37	6	28543318	28543318	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr6:28543318C>T	uc003nlo.2	-	3	1782	c.1164G>A	c.(1162-1164)GGG>GGA	p.G388G		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	388	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ATCTGTACTCCCCATCAGGAT	0.343000													14	47					0	0	0.001855	0	0
C2	717	broad.mit.edu	37	6	31896656	31896656	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr6:31896656G>A	uc003nyf.2	+	3	668	c.404G>A	c.(403-405)GGC>GAC	p.G135D	C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_Intron|C2_uc003nye.3_Missense_Mutation_p.G135D|C2_uc010jtk.2_Intron|C2_uc011doq.1_Missense_Mutation_p.G106D|C2_uc003nyg.2_Intron|CFB_uc011dor.1_Intron	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	135	Sushi 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		CGCCCCAACGGCATGTGGGAT	0.622000													70	223					0	0	0.014410	0	0
NOTCH4	4855	broad.mit.edu	37	6	32163695	32163695	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr6:32163695C>G	uc003obb.2	-	30	5670	c.5531G>C	c.(5530-5532)CGG>CCG	p.R1844P	GPSM3_uc003oaz.2_5'Flank|NOTCH4_uc011dpt.1_3'UTR|NOTCH4_uc003oba.2_Missense_Mutation_p.R504P|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1844	Cytoplasmic (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						TGACACCGTCCGTGCGCGCGG	0.731000													25	77					0	0	0.003330	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33406690	33406690	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr6:33406690C>T	uc011dri.1	+	10	1865	c.1670C>T	c.(1669-1671)TCC>TTC	p.S557F	SYNGAP1_uc003oeo.1_Missense_Mutation_p.S542F|SYNGAP1_uc010juy.2_Missense_Mutation_p.S542F|SYNGAP1_uc010juz.2_Missense_Mutation_p.S269F	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	557	Ras-GAP.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						GTGGTCAACTCCCACTGGTGA	0.542000													23	82					0	0	0.004656	0	0
ANKS1A	23294	broad.mit.edu	37	6	34952961	34952961	+	Missense_Mutation	SNP	C	T	T	rs144301550	by1000genomes	TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr6:34952961C>T	uc003ojx.3	+	8	1257	c.1115C>T	c.(1114-1116)TCG>TTG	p.S372L	ANKS1A_uc011dss.1_Intron|ANKS1A_uc011dst.1_5'UTR|ANKS1A_uc010jvp.1_5'UTR	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	372						cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						TCCTGCCATTCGTTGGACAGC	0.512000													12	34					0	0	0.001855	0	0
MDGA1	266727	broad.mit.edu	37	6	37631827	37631827	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr6:37631827G>T	uc003onu.1	-	2	1302	c.123C>A	c.(121-123)GAC>GAA	p.D41E		NM_153487	NP_705691	Q8NFP4	MDGA1_HUMAN	MAM domain containing	41	Ig-like 1.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)	2						CGCTGATATTGTCCTCTTTCA	0.612000													21	77					1.50039e-11	3.52862e-11	0.012319	1	0
CLIC5	53405	broad.mit.edu	37	6	45870870	45870870	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr6:45870870G>A	uc003oxv.3	-	6	1294	c.1188C>T	c.(1186-1188)ATC>ATT	p.I396I	CLIC5_uc003oxu.3_Silent_p.I237I	NM_001114086	NP_001107558	Q9NZA1	CLIC5_HUMAN	chloride intracellular channel 5 isoform a	396	GST C-terminal.				female pregnancy	actin cytoskeleton|cell cortex|chloride channel complex|Golgi apparatus|Golgi apparatus|insoluble fraction|microtubule organizing center	protein binding|voltage-gated chloride channel activity			ovary(1)|skin(1)	2						AGGCCAACTCGATCTCACTGT	0.567000													14	34					0	0	0.002450	0	0
CD2AP	23607	broad.mit.edu	37	6	47576922	47576922	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr6:47576922C>T	uc003oyw.2	+	16	2152	c.1696C>T	c.(1696-1698)CCA>TCA	p.P566S		NM_012120	NP_036252	Q9Y5K6	CD2AP_HUMAN	CD2-associated protein	566					cell division|mitosis|protein complex assembly|signal transduction|substrate-dependent cell migration, cell extension	cytoplasm|filamentous actin|nucleolus|plasma membrane|ruffle	SH3 domain binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2			Lung(136;0.105)|LUSC - Lung squamous cell carcinoma(51;0.138)			TTTCCTGACTCCATTAGAAAT	0.333000													11	24					0	0	0.010729	0	0
PGK2	5232	broad.mit.edu	37	6	49754580	49754580	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr6:49754580G>A	uc003ozu.2	-	1	428	c.321C>T	c.(319-321)GCC>GCT	p.A107A		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	107					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					GGTTGGCACAGGCTTTCTCCA	0.507000													21	48					0	0	0.002780	0	0
KCNQ5	56479	broad.mit.edu	37	6	73904753	73904753	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr6:73904753G>A	uc003pgk.2	+	14	2762	c.2415G>A	c.(2413-2415)AGG>AGA	p.R805R	KCNQ5_uc011dyh.1_Silent_p.R824R|KCNQ5_uc011dyi.1_Silent_p.R815R|KCNQ5_uc010kat.2_Silent_p.R796R|KCNQ5_uc011dyj.1_Silent_p.R695R|KCNQ5_uc011dyk.1_Silent_p.R555R	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	805					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		GTTCTATGAGGAAAAGCTTTG	0.483000													13	51					0	0	0.002450	0	0
DOPEY1	23033	broad.mit.edu	37	6	83838630	83838630	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr6:83838630C>T	uc003pjs.1	+	16	2004	c.1744C>T	c.(1744-1746)CCT>TCT	p.P582S	DOPEY1_uc011dyy.1_Missense_Mutation_p.P573S|DOPEY1_uc010kbl.1_Missense_Mutation_p.P573S	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	582					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		TCATGAAAATCCTACTGAAGT	0.358000													13	29					0	0	0.001855	0	0
SLC22A16	85413	broad.mit.edu	37	6	110777798	110777798	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr6:110777798G>A	uc003puf.2	-	2	543	c.476C>T	c.(475-477)CCC>CTC	p.P159L	SLC22A16_uc003pue.2_Missense_Mutation_p.P140L|SLC22A16_uc003pug.2_Missense_Mutation_p.P159L	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	159	Helical; (Potential).				acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		CATAAATAGGGGCTGGATCAG	0.443000													18	46					0	0	0.006122	0	0
LAMA4	3910	broad.mit.edu	37	6	112437103	112437103	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr6:112437103T>C	uc003pvu.2	-	36	5384	c.5075A>G	c.(5074-5076)AAT>AGT	p.N1692S	LAMA4_uc003pvv.2_Missense_Mutation_p.N1685S|LAMA4_uc003pvt.2_Missense_Mutation_p.N1685S	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	1692	Laminin G-like 5.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		GTACTCCCCATTGACACTGTG	0.418000													27	58					0	0	0.006320	0	0
NKAIN2	154215	broad.mit.edu	37	6	124604234	124604234	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr6:124604234C>T	uc003pzo.2	+	2	415	c.138C>T	c.(136-138)ATC>ATT	p.I46I	NKAIN2_uc003pzn.1_Silent_p.I46I|NKAIN2_uc003pzp.2_Silent_p.I45I|NKAIN2_uc010keq.2_Silent_p.I46I|NKAIN2_uc010ker.2_5'UTR|NKAIN2_uc010kep.1_RNA	NM_001040214	NP_001035304	Q5VXU1	NKAI2_HUMAN	T-cell lymphoma breakpoint-associated target 1	46	Helical; (Potential).					integral to membrane|plasma membrane					0				GBM - Glioblastoma multiforme(226;0.104)		ATATTATTATCGTCATTCTTG	0.348000													15	37					0	0	0.003163	0	0
ITGB8	3696	broad.mit.edu	37	7	20421418	20421418	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:20421418C>T	uc003suu.2	+	6	1575	c.870C>T	c.(868-870)CTC>CTT	p.L290L	ITGB8_uc011jyh.1_Silent_p.L155L|ITGB8_uc003sut.2_Silent_p.L290L	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	290	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						CGTCTCATCTCGCTCTTGATA	0.418000													27	38					0	0	0.005443	0	0
GPNMB	10457	broad.mit.edu	37	7	23293870	23293870	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:23293870C>T	uc003swc.2	+	3	467	c.306C>T	c.(304-306)TTC>TTT	p.F102F	GPNMB_uc003swa.2_Silent_p.F102F|GPNMB_uc003swb.2_Silent_p.F102F|GPNMB_uc011jyy.1_Silent_p.F102F|GPNMB_uc011jyz.1_Intron	NM_001005340	NP_001005340	Q14956	GPNMB_HUMAN	glycoprotein (transmembrane) nmb isoform a	102	Extracellular (Potential).				negative regulation of cell proliferation	melanosome				ovary(3)|breast(2)	5			GBM - Glioblastoma multiforme(13;0.154)			ACCTGATATTCCCTAGATGCC	0.473000													44	95					0	0	0.011902	0	0
BMPER	168667	broad.mit.edu	37	7	34091542	34091542	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:34091542C>T	uc011kap.1	+	8	860	c.746C>T	c.(745-747)TCC>TTC	p.S249F		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	249	VWFC 4.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						GACAATGGATCCTCATTTCTG	0.463000													51	128					0	0	0.014410	0	0
AOAH	313	broad.mit.edu	37	7	36677509	36677509	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:36677509C>T	uc003tfh.3	-	5	799	c.398G>A	c.(397-399)TGG>TAG	p.W133*	AOAH_uc010kxf.2_Nonsense_Mutation_p.W133*|AOAH_uc011kba.1_Nonsense_Mutation_p.W101*	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	133					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						TGTAAATTTCCATGTCTCCTA	0.363000													5	38					0	0	0.001168	0	0
HECW1	23072	broad.mit.edu	37	7	43594324	43594324	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:43594324C>T	uc003tid.1	+	29	5249	c.4644C>T	c.(4642-4644)CTC>CTT	p.L1548L	HECW1_uc011kbi.1_Silent_p.L1514L	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1548	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						TCGCAGCCCTCCGTGGGAGCA	0.572000													10	27					0	0	0.013537	0	0
OGDH	4967	broad.mit.edu	37	7	44746846	44746846	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:44746846C>T	uc003tln.2	+	21	2764	c.2655C>T	c.(2653-2655)ATC>ATT	p.I885I	OGDH_uc011kbx.1_Silent_p.I881I|OGDH_uc011kby.1_Silent_p.I735I|OGDH_uc003tlp.2_Silent_p.I896I|OGDH_uc011kbz.1_Silent_p.I680I	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	885					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	AGCGGGTGATCCCAGAAGATG	0.562000													16	39					0	0	0.007413	0	0
RAMP3	10268	broad.mit.edu	37	7	45216990	45216990	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:45216990G>A	uc003tnb.2	+	2	202	c.141G>A	c.(139-141)ATG>ATA	p.M47I	RAMP3_uc003tnc.2_Missense_Mutation_p.M15I	NM_005856	NP_005847	O60896	RAMP3_HUMAN	receptor activity modifying protein 3 precursor	47	Extracellular (Potential).				intracellular protein transport|receptor-mediated endocytosis|regulation of G-protein coupled receptor protein signaling pathway	integral to plasma membrane|lysosome	protein transporter activity				0					Pramlintide(DB01278)	TCGCAGACATGATGGGCAAGG	0.617000													12	58					0	0	0.013537	0	0
VWC2	375567	broad.mit.edu	37	7	49842344	49842344	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:49842344G>A	uc003tot.1	+	3	1290	c.734G>A	c.(733-735)GGT>GAT	p.G245D		NM_198570	NP_940972	Q2TAL6	VWC2_HUMAN	von Willebrand factor C domain containing 2	245	VWFC 2.				negative regulation of BMP signaling pathway|positive regulation of neuron differentiation	basement membrane|extracellular space					0						GAAGCCAACGGTGAGGTGCTA	0.522000													32	82					0	0	0.010818	0	0
ZNF716	441234	broad.mit.edu	37	7	57510015	57510015	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:57510015C>T	uc011kdi.1	+	1	133	c.21C>T	c.(19-21)CCC>CCT	p.P7P		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						GACCGGGACCCCCTGGAAGCC	0.567000													19	24					0	0	0.003954	0	0
AUTS2	26053	broad.mit.edu	37	7	70229864	70229864	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:70229864C>T	uc003tvw.3	+	8	2084	c.1341C>T	c.(1339-1341)ACC>ACT	p.T447T	AUTS2_uc003tvx.3_Silent_p.T447T|AUTS2_uc011keg.1_5'Flank	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	447										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		tcacacccaccctccagcccc	0.209000													9	11					0	0	0.004482	0	0
TBL2	26608	broad.mit.edu	37	7	72985206	72985206	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:72985206G>A	uc003tyh.2	-	7	1109	c.975C>T	c.(973-975)CGC>CGT	p.R325R	TBL2_uc011kex.1_Silent_p.R289R|TBL2_uc010lbg.2_Silent_p.R230R|TBL2_uc003tyi.2_Silent_p.R160R|TBL2_uc011key.1_Silent_p.R196R|TBL2_uc010lbh.2_Silent_p.R230R	NM_012453	NP_036585	Q9Y4P3	TBL2_HUMAN	transducin (beta)-like 2	325											0		Lung NSC(55;0.0659)|all_lung(88;0.152)				CCTCTTCAAAGCGGCCTGTCT	0.577000													38	87					0	0	0.007835	0	0
ABCB4	5244	broad.mit.edu	37	7	87047888	87047888	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:87047888T>A	uc003uiv.1	-	20	2519	c.2443A>T	c.(2443-2445)ACA>TCA	p.T815S	ABCB4_uc003uiw.1_Missense_Mutation_p.T815S|ABCB4_uc003uix.1_Missense_Mutation_p.T815S	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	815	ABC transmembrane type-1 2.|Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					GCAAGTCTTGTAGAAAGTGCA	0.373000													18	44					0	0	0.008871	0	0
FZD1	8321	broad.mit.edu	37	7	90895683	90895683	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:90895683C>T	uc003ula.2	+	1	1901	c.1488C>T	c.(1486-1488)TTC>TTT	p.F496F		NM_003505	NP_003496	Q9UP38	FZD1_HUMAN	frizzled 1 precursor	496	Helical; Name=5; (Potential).				autocrine signaling|axonogenesis|brain development|canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|embryo development|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|lung alveolus development|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|response to drug|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cell surface|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|receptor binding|Wnt receptor activity|Wnt-protein binding				0	all_cancers(62;3.1e-10)|all_epithelial(64;1.66e-08)|Breast(17;0.000635)|Lung NSC(181;0.153)|all_lung(186;0.154)|all_hematologic(106;0.215)		STAD - Stomach adenocarcinoma(171;0.0134)			CGCCCCTCTTCGTGTACCTGT	0.622000													46	120					0	0	0.014410	0	0
SAMD9	54809	broad.mit.edu	37	7	92733974	92733974	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:92733974C>T	uc003umf.2	-	3	1693	c.1437G>A	c.(1435-1437)ACG>ACA	p.T479T	SAMD9_uc003umg.2_Silent_p.T479T	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	479						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			GAGTAGAAATCGTCTCATTTG	0.393000													30	46					0	0	0.012213	0	0
LMTK2	22853	broad.mit.edu	37	7	97822385	97822385	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:97822385C>T	uc003upd.1	+	11	2901	c.2608C>T	c.(2608-2610)CTC>TTC	p.L870F		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	870					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					GGTTGAAATTCTCTCAACTGA	0.547000													14	29					0	0	0.001855	0	0
CYP3A43	64816	broad.mit.edu	37	7	99436782	99436782	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:99436782G>A	uc003urx.1	+	3	308	c.205G>A	c.(205-207)GGA>AGA	p.G69R	CYP3A43_uc003ury.1_Missense_Mutation_p.G69R|CYP3A43_uc003urz.1_Missense_Mutation_p.G69R|CYP3A43_uc003usa.1_RNA|CYP3A43_uc010lgi.1_Silent_p.T109T|CYP3A43_uc003usb.1_5'UTR	NM_057095	NP_476436	Q9HB55	CP343_HUMAN	cytochrome P450, family 3, subfamily A,	69			YGTHSHKLFKKLGIPGPTPLPFLGTILFYLRGLWNFDRECN EKYGEMWGLYEGQQPMLVIMDPD -> LGPIHINFLRSWEF LGQPLCLFWELFCSTLGVFGILTENVMKNTEKCGGCMRGNS PCWSSWIPT (in allele CYP3A43*2).		xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)				Cetirizine(DB00341)|Doxycycline(DB00254)	TGAAAAATACGGAGAAATGTG	0.368000													14	54					0	0	0.002450	0	0
FBXO24	26261	broad.mit.edu	37	7	100189321	100189321	+	Silent	SNP	A	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:100189321A>T	uc003uvm.1	+	4	647	c.354A>T	c.(352-354)GGA>GGT	p.G118G	FBXO24_uc010lha.1_RNA|FBXO24_uc003uvl.1_Silent_p.G104G|FBXO24_uc003uvn.1_5'UTR|uc011kjy.1_Intron|FBXO24_uc011kjz.1_Silent_p.G156G|FBXO24_uc011kka.1_Silent_p.G106G	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	118						ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					AGGCATTTGGAGGCCGCCGCC	0.577000													26	67					0	0	0.006320	0	0
RELN	5649	broad.mit.edu	37	7	103292135	103292135	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:103292135G>A	uc003vca.2	-	15	2025	c.1865C>T	c.(1864-1866)ACT>ATT	p.T622I	RELN_uc010liz.2_Missense_Mutation_p.T622I	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	622					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GGAGTAGACAGTGCTGTGGGG	0.463000													34	44					0	0	0.004878	0	0
DOCK4	9732	broad.mit.edu	37	7	111398733	111398733	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:111398733G>A	uc003vfx.2	-	40	4518	c.4249C>T	c.(4249-4251)CGC>TGC	p.R1417C	DOCK4_uc011kml.1_Missense_Mutation_p.R298C|DOCK4_uc011kmm.1_Missense_Mutation_p.R324C|DOCK4_uc003vfw.2_Missense_Mutation_p.R867C|DOCK4_uc003vfy.2_Missense_Mutation_p.R1462C	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1417	DHR-2.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				CGGTCATAGCGGAATTTCCAG	0.358000													13	18					0	0	0.003163	0	0
C7orf58	79974	broad.mit.edu	37	7	120906863	120906863	+	Splice_Site	SNP	G	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:120906863G>T	uc003vjq.3	+	20	3080	c.2633_splice	c.e20+1	p.R878_splice		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1							endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					TTTTGAAGAGGTAAATGTCTG	0.348000													19	25					6.49762e-13	1.53236e-12	0.006122	1	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				25	26					0	0	0.004656	0	0
OR2F2	135948	broad.mit.edu	37	7	143632411	143632411	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:143632411C>T	uc011ktv.1	+	1	86	c.86C>T	c.(85-87)TCC>TTC	p.S29F		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					TCCCTGTTTTCCCTGTTCTTG	0.448000													70	86					0	0	0.014410	0	0
OR2A2	442361	broad.mit.edu	37	7	143807498	143807498	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:143807498C>T	uc011ktz.1	+	1	823	c.823C>T	c.(823-825)CTG>TTG	p.L275L		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	275	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					AATGCTGTCCCTGTTTCACAG	0.512000													14	62					0	0	0.011902	0	0
ATG9B	285973	broad.mit.edu	37	7	150715841	150715841	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr7:150715841G>A	uc011kvc.1	-	6	1660	c.1584C>T	c.(1582-1584)GCC>GCT	p.A528A	ATG9B_uc003wig.3_Intron	NM_173681	NP_775952	Q674R7	ATG9B_HUMAN	ATG9 autophagy related 9 homolog B	528	Helical; (Potential).				autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane				ovary(1)	1	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CGAGCTGGCGGGCCAGCAGCG	0.746000													4	8					0	0	0.000602	0	0
MYOM2	9172	broad.mit.edu	37	8	2048769	2048769	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr8:2048769C>T	uc003wpx.3	+	20	2682	c.2544C>T	c.(2542-2544)TTC>TTT	p.F848F	MYOM2_uc011kwi.1_Silent_p.F273F	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	848	Fibronectin type-III 5.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CTGGATATTTCGTGGACTTCA	0.478000													9	25					0	0	0.006214	0	0
RP1L1	94137	broad.mit.edu	37	8	10467849	10467849	+	Silent	SNP	T	C	C			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr8:10467849T>C	uc003wtc.2	-	4	3988	c.3759A>G	c.(3757-3759)CAA>CAG	p.Q1253Q		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1253					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		AACACTGCTGTTGGTTTTCCA	0.557000													15	43					0	0	0.003163	0	0
MTUS1	57509	broad.mit.edu	37	8	17581343	17581343	+	Splice_Site	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr8:17581343C>T	uc003wxv.2	-	4	2762	c.2288_splice	c.e4-1	p.G763_splice	MTUS1_uc003wxt.2_5'Flank|MTUS1_uc011kyg.1_5'Flank|MTUS1_uc010lsy.2_Splice_Site|MTUS1_uc003wxw.2_Intron|MTUS1_uc010lsz.2_Intron	NM_001001924	NP_001001924	Q9ULD2	MTUS1_HUMAN	mitochondrial tumor suppressor 1 isoform 1							Golgi apparatus|microtubule|microtubule organizing center|mitochondrion|nucleus|plasma membrane|spindle				ovary(1)|skin(1)	2				Colorectal(111;0.0778)		GTAGGCTTTCCTTGGGGTTTA	0.423000													20	54					0	0	0.008871	0	0
UNC5D	137970	broad.mit.edu	37	8	35425736	35425736	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr8:35425736G>A	uc003xjr.1	+	3	771	c.443G>A	c.(442-444)AGG>AAG	p.R148K	UNC5D_uc003xjs.1_Missense_Mutation_p.R143K	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	148	Extracellular (Potential).|Ig-like.				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		TCCAAGAGCAGGAAGGCCTCT	0.507000													20	53					0	0	0.010504	0	0
PREX2	80243	broad.mit.edu	37	8	69104649	69104649	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr8:69104649G>C	uc003xxv.1	+	37	4520	c.4493G>C	c.(4492-4494)TGT>TCT	p.C1498S		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1498					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						ACAGCTGCCTGTGCAAACACA	0.527000													3	31					0	0	0.004672	0	0
GEM	2669	broad.mit.edu	37	8	95265294	95265294	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr8:95265294C>T	uc003ygj.2	-	3	627	c.378G>A	c.(376-378)ACG>ACA	p.T126T	GEM_uc003ygi.2_Silent_p.T126T	NM_005261	NP_005252	P55040	GEM_HUMAN	GTP-binding mitogen-induced T-cell protein	126					cell surface receptor linked signaling pathway|immune response|small GTPase mediated signal transduction	internal side of plasma membrane	calmodulin binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding			lung(1)	1	Breast(36;4.65e-06)	Myeloproliferative disorder(644;0.204)	BRCA - Breast invasive adenocarcinoma(8;0.00691)			GGAGTATAATCGTTGCACTTT	0.418000													32	49					0	0	0.004878	0	0
KIAA1429	25962	broad.mit.edu	37	8	95508607	95508607	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr8:95508607G>C	uc003ygo.1	-	18	4345	c.4332C>G	c.(4330-4332)AGC>AGG	p.S1444R	KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1444					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			TTTCTTCTTTGCTTTGTAGAA	0.388000													11	35					0	0	0.010729	0	0
POP1	10940	broad.mit.edu	37	8	99168559	99168559	+	Missense_Mutation	SNP	C	T	T	rs149744031	byFrequency	TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr8:99168559C>T	uc003yij.3	+	15	2439	c.2339C>T	c.(2338-2340)TCG>TTG	p.S780L	POP1_uc011lgv.1_Missense_Mutation_p.S780L|POP1_uc003yik.2_Missense_Mutation_p.S780L	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	780					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			TGTCAAGAATCGGCAGGGCCT	0.542000													41	88					0	0	0.013114	0	0
TMEM74	157753	broad.mit.edu	37	8	109797318	109797318	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr8:109797318G>A	uc003ymy.1	-	2	115	c.10C>T	c.(10-12)CAC>TAC	p.H4Y	TMEM74_uc003ymx.2_Intron	NM_153015	NP_694560	Q96NL1	TMM74_HUMAN	transmembrane protein 74	4					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(57;3.08e-10)			GCAAGGTAGTGGAGCTCCATG	0.527000													6	54					0	0	0.001984	0	0
TAF2	6873	broad.mit.edu	37	8	120774830	120774830	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr8:120774830G>A	uc003you.2	-	19	2653	c.2383C>T	c.(2383-2385)CGT>TGT	p.R795C		NM_003184	NP_003175	Q6P1X5	TAF2_HUMAN	TBP-associated factor 2	795					G2/M transition of mitotic cell cycle|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor TFIID complex|transcription factor TFTC complex	metallopeptidase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			large_intestine(2)|ovary(2)|kidney(1)|skin(1)	6	Lung NSC(37;9.35e-07)|Ovarian(258;0.011)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			ATTTCTGCACGATAATAGTTA	0.303000													17	19					0	0	0.007413	0	0
FAM83A	84985	broad.mit.edu	37	8	124206317	124206317	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr8:124206317G>A	uc003ypv.2	+	4	2716	c.702G>A	c.(700-702)AGG>AGA	p.R234R	FAM83A_uc003ypw.2_Silent_p.R234R|FAM83A_uc003ypy.2_Silent_p.R178R|FAM83A_uc003ypx.2_Silent_p.R234R|FAM83A_uc003ypz.2_Silent_p.R234R	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	234										ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			AGTCAGGCAGGAAATTCGCTG	0.473000													14	59					0	0	0.002450	0	0
GPR20	2843	broad.mit.edu	37	8	142367222	142367222	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr8:142367222G>A	uc003ywf.2	-	2	891	c.802C>T	c.(802-804)CCC>TCC	p.P268S		NM_005293	NP_005284	Q99678	GPR20_HUMAN	G protein-coupled receptor 20	268	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(97;4.32e-16)|all_epithelial(106;6.61e-14)|Lung NSC(106;9.4e-06)|all_lung(105;1.35e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0415)			GGCATGTCGGGCCACAGCGCC	0.652000													33	20					0	0	0.012213	0	0
EPPK1	83481	broad.mit.edu	37	8	144943375	144943375	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr8:144943375C>T	uc003zaa.1	-	1	4060	c.4047G>A	c.(4045-4047)CAG>CAA	p.Q1349Q		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1349	Plectin 23.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			AGCCCTCGTTCTGTGGCACGA	0.701000													7	38					0	0	0.001984	0	0
EPPK1	83481	broad.mit.edu	37	8	144946505	144946505	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr8:144946505G>A	uc003zaa.1	-	1	930	c.917C>T	c.(916-918)ACC>ATC	p.T306I		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	306	Plectin 6.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CAGGTGCTCGGTGGCAGCCTG	0.682000													29	147					0	0	0.003271	0	0
ZNF251	90987	broad.mit.edu	37	8	145947274	145947274	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr8:145947274C>T	uc003zdv.3	-	5	2027	c.1771G>A	c.(1771-1773)GAA>AAA	p.E591K		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	591					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		TAGGGCTTTTCCCCAGCATGC	0.433000													32	44					0	0	0.012213	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971028	21971028	+	Nonsense_Mutation	SNP	C	T	T	rs121913389		TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:21971028C>T	uc003zpk.2	-	2	542	c.330G>A	c.(328-330)TGG>TGA	p.W110*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.G166R	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	110	ANK 4.				cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.W110*(38)|p.?(13)|p.H83fs*2(2)|p.W110fs*9(1)|p.D105fs*8(1)|p.A68fs*3(1)|p.R107fs*33(1)|p.W110fs*36(1)|p.W110C(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		GCAGACGGCCCCAGGCATCGC	0.736000		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			36	73					0	0	0.004289	0	0
RECK	8434	broad.mit.edu	37	9	36083538	36083538	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:36083538C>T	uc003zyv.2	+	8	702	c.616C>T	c.(616-618)CCA>TCA	p.P206S	RECK_uc010mld.2_Missense_Mutation_p.P206S|RECK_uc003zyu.3_Missense_Mutation_p.P206S|RECK_uc003zyw.2_Missense_Mutation_p.P78S|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	206	5 X Knot repeats.					anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			TCAATCTTATCCAATGAGGAA	0.348000													6	14					0	0	0.001984	0	0
FLJ46321	389763	broad.mit.edu	37	9	84606832	84606832	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:84606832C>T	uc004amn.2	+	4	1494	c.1447C>T	c.(1447-1449)CAT>TAT	p.H483Y		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	483						integral to membrane					0						GCAGCACATCCATCAGCAGCC	0.453000													4	40					0	0	0.000602	0	0
FAM75C1	441452	broad.mit.edu	37	9	90535284	90535284	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:90535284G>A	uc010mqi.2	+	4	491	c.462G>A	c.(460-462)ATG>ATA	p.M154I	FAM75C1_uc004apq.3_Missense_Mutation_p.M137I	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						ATGAGCCTATGGAAGATGCTG	0.577000													41	116					0	0	0.014410	0	0
OR13C4	138804	broad.mit.edu	37	9	107289106	107289106	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:107289106G>A	uc011lvn.1	-	1	385	c.385C>T	c.(385-387)CCT>TCT	p.P129S		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TATCTCAGAGGGTTACAGATG	0.448000													18	53					0	0	0.006122	0	0
EPB41L4B	54566	broad.mit.edu	37	9	111979209	111979209	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:111979209G>A	uc004bdz.1	-	16	1921	c.1626C>T	c.(1624-1626)TCC>TCT	p.S542S		NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	542						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						CACTTGTAAGGGACTTGCTGC	0.493000													24	94					0	0	0.005443	0	0
SVEP1	79987	broad.mit.edu	37	9	113169591	113169591	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:113169591C>T	uc010mtz.2	-	38	8626	c.8289G>A	c.(8287-8289)TGG>TGA	p.W2763*	SVEP1_uc010mty.2_Nonsense_Mutation_p.W689*	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2763	Sushi 22.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AGGCACCACTCCACTTTCTAT	0.463000													21	66					0	0	0.008871	0	0
BSPRY	54836	broad.mit.edu	37	9	116131915	116131915	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:116131915C>T	uc004bhg.3	+	6	750	c.702C>T	c.(700-702)ATC>ATT	p.I234I	BSPRY_uc010muw.2_Nonsense_Mutation_p.R193*	NM_017688	NP_060158	Q5W0U4	BSPRY_HUMAN	B-box and SPRY domain containing	234	B30.2/SPRY.				calcium ion transport	cytoplasm|membrane	zinc ion binding			breast(1)	1						ACATACGGATCGATGAGAGGA	0.557000													17	44					0	0	0.012319	0	0
ASTN2	23245	broad.mit.edu	37	9	119903635	119903635	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:119903635C>T	uc004bjs.1	-	4	1239	c.1138G>A	c.(1138-1140)GGG>AGG	p.G380R	ASTN2_uc004bjr.1_Missense_Mutation_p.G380R|ASTN2_uc004bjt.1_Intron	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	380	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						TTCCTCTTCCCTGCCGATGTG	0.577000													9	29					0	0	0.004482	0	0
DBC1	1620	broad.mit.edu	37	9	121929537	121929537	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:121929537T>A	uc004bkc.2	-	8	2567	c.2111A>T	c.(2110-2112)AAT>ATT	p.N704I		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	704					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GGCCAGGCGATTAATTCGGTC	0.557000													11	61					0	0	0.010729	0	0
HSPA5	3309	broad.mit.edu	37	9	128000451	128000451	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:128000451A>T	uc004bpn.2	-	7	1627	c.1371T>A	c.(1369-1371)AAT>AAA	p.N457K		NM_005347	NP_005338	P11021	GRP78_HUMAN	heat shock 70kDa protein 5	457					anti-apoptosis|cellular response to glucose starvation|ER-associated protein catabolic process|platelet activation|platelet degranulation|regulation of protein folding in endoplasmic reticulum	cell surface|endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|ER-Golgi intermediate compartment|integral to endoplasmic reticulum membrane|melanosome|midbody|nucleus|perinuclear region of cytoplasm	ATP binding|ATPase activity|calcium ion binding|caspase inhibitor activity|chaperone binding|misfolded protein binding|protein binding, bridging|protein domain specific binding|ubiquitin protein ligase binding|unfolded protein binding			ovary(3)|skin(1)	4					Antihemophilic Factor(DB00025)	CAGTTGGTTGATTATCAGAAG	0.313000										Prostate(1;0.17)			13	45					0	0	0.002450	0	0
NUP188	23511	broad.mit.edu	37	9	131735486	131735486	+	Silent	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:131735486C>T	uc004bws.1	+	12	1183	c.1161C>T	c.(1159-1161)TTC>TTT	p.F387F		NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	387					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						TGCTCTCTTTCGTTCTGACCT	0.502000													9	36					0	0	0.006214	0	0
ASS1	445	broad.mit.edu	37	9	133342128	133342128	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:133342128G>A	uc004bzm.2	+	7	793	c.437G>A	c.(436-438)AGG>AAG	p.R146K	ASS1_uc004bzn.2_Missense_Mutation_p.R146K|ASS1_uc010mza.2_Missense_Mutation_p.R222K|ASS1_uc004bzo.2_Missense_Mutation_p.R127K|ASS1_uc010mzb.2_Missense_Mutation_p.R184K|ASS1_uc004bzp.2_Missense_Mutation_p.R146K|ASS1_uc010mzc.2_Missense_Mutation_p.R146K	NM_000050	NP_000041	P00966	ASSY_HUMAN	argininosuccinate synthetase 1	146					arginine biosynthetic process|urea cycle	cytosol	argininosuccinate synthase activity|ATP binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000514)	Adenosine triphosphate(DB00171)|L-Arginine(DB00125)|L-Aspartic Acid(DB00128)|L-Citrulline(DB00155)	GCTCCCTGGAGGATGCCTGAA	0.597000													8	20					0	0	0.006214	0	0
RAPGEF1	2889	broad.mit.edu	37	9	134473699	134473699	+	Splice_Site	SNP	T	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:134473699T>A	uc004cbc.2	-	13	2074	c.1944_splice	c.e13-1	p.R648_splice	RAPGEF1_uc004cbb.2_Splice_Site_p.R666_splice|RAPGEF1_uc010mzm.2_Splice_Site|RAPGEF1_uc010mzn.2_Splice_Site_p.R823_splice|RAPGEF1_uc004cbd.2_Splice_Site_p.R653_splice|RAPGEF1_uc010mzs.1_Intron|RAPGEF1_uc010mzl.1_Intron|RAPGEF1_uc010mzo.1_Intron|RAPGEF1_uc010mzp.1_Intron|RAPGEF1_uc010mzq.1_Intron|RAPGEF1_uc010mzr.1_Intron	NM_005312	NP_005303	Q13905	RPGF1_HUMAN	guanine nucleotide-releasing factor 2 isoform a						activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			lung(3)|ovary(2)|breast(1)|skin(1)	7		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		TTTGGGGCCCTGCGGGGAGAA	0.602000													3	14					0	0	0.004672	0	0
RALGDS	5900	broad.mit.edu	37	9	135985749	135985749	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:135985749G>A	uc004cco.2	-	3	442	c.422C>T	c.(421-423)ACC>ATC	p.T141I	RALGDS_uc004ccp.2_RNA|RALGDS_uc004ccq.2_Missense_Mutation_p.T141I|RALGDS_uc004ccr.2_Missense_Mutation_p.T140I|RALGDS_uc011mcv.1_Missense_Mutation_p.T124I|RALGDS_uc004ccs.2_Missense_Mutation_p.T86I|RALGDS_uc011mcw.1_Missense_Mutation_p.T212I|RALGDS_uc004ccv.1_5'Flank|RALGDS_uc004ccu.1_5'Flank	NM_006266	NP_006257	Q12967	GNDS_HUMAN	ral guanine nucleotide dissociation stimulator	141	N-terminal Ras-GEF.				nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	Ral guanyl-nucleotide exchange factor activity			large_intestine(1)|lung(1)|ovary(1)	3				OV - Ovarian serous cystadenocarcinoma(145;3.66e-06)|Epithelial(140;2.77e-05)		CAGGAAGATGGTGACGTAGGA	0.587000			T	CIITA	PMBL|Hodgkin Lymphona|								13	28					0	0	0.003163	0	0
SNAPC4	6621	broad.mit.edu	37	9	139279172	139279172	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:139279172C>T	uc004chh.2	-	13	1429	c.1420G>A	c.(1420-1422)GGT>AGT	p.G474S		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	474	HTH myb-type 3.				snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		AGCAACTTACCGACACCATAT	0.234000													7	19					0	0	0.001984	0	0
FBXW5	54461	broad.mit.edu	37	9	139835775	139835775	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:139835775G>A	uc004cjx.2	-	8	1536	c.1385C>T	c.(1384-1386)GCG>GTG	p.A462V	FBXW5_uc010nbx.2_RNA|FBXW5_uc004cjy.2_Missense_Mutation_p.A210V|FBXW5_uc004cjz.2_Missense_Mutation_p.A192V	NM_018998	NP_061871	Q969U6	FBXW5_HUMAN	F-box and WD repeat domain containing 5	462							catalytic activity|protein binding				0	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.19)	OV - Ovarian serous cystadenocarcinoma(145;7.8e-06)|Epithelial(140;0.000106)		GGCGCGGTGCGCACGCAGAGC	0.672000													7	22					0	0	0.003080	0	0
WDR85	92715	broad.mit.edu	37	9	140458908	140458908	+	Silent	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:140458908G>A	uc004cnk.1	-	8	1085	c.927C>T	c.(925-927)ATC>ATT	p.I309I	WDR85_uc004cnj.1_Silent_p.I38I|WDR85_uc004cnl.1_Silent_p.I133I|WDR85_uc004cnm.1_Silent_p.I70I|WDR85_uc004cnn.1_Silent_p.I38I|WDR85_uc010ncl.1_Silent_p.I70I	NM_138778	NP_620133	Q9BTV6	WDR85_HUMAN	WD repeat domain 85	309					peptidyl-diphthamide biosynthetic process from peptidyl-histidine						0	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.00029)|Epithelial(140;0.000509)		GGCAGTTGAGGATCTTAAAGC	0.612000													6	22					0	0	0.001168	0	0
PDK3	5165	broad.mit.edu	37	X	24546235	24546235	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chrX:24546235C>T	uc004dbg.2	+	9	1124	c.895C>T	c.(895-897)CGT>TGT	p.R299C	PDK3_uc004dbh.2_Missense_Mutation_p.R299C	NM_005391	NP_005382	Q15120	PDK3_HUMAN	pyruvate dehydrogenase kinase 3 isoform 2	299	Histidine kinase.				glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|protein binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						AAAAATAGATCGTCTTTTTAA	0.423000													7	30					0	0	0.003080	0	0
MAGEB18	286514	broad.mit.edu	37	X	26157834	26157834	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chrX:26157834G>A	uc004dbq.1	+	2	919	c.732G>A	c.(730-732)ATG>ATA	p.M244I		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	244	MAGE.						protein binding			central_nervous_system(1)	1						GGAAGGTCATGACCAAAGATT	0.512000													4	12					0	0	0.000602	0	0
FAM123B	139285	broad.mit.edu	37	X	63410334	63410334	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chrX:63410334G>A	uc004dvo.2	-	2	3106	c.2833C>T	c.(2833-2835)CCC>TCC	p.P945S		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	945					Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						AGGGAAAGGGGACTGTCTCGG	0.592000													11	31					0	0	0.013537	0	0
ZC4H2	55906	broad.mit.edu	37	X	64141834	64141834	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chrX:64141834G>A	uc004dvu.2	-	2	176	c.88C>T	c.(88-90)CGT>TGT	p.R30C	ZC4H2_uc004dvv.2_Missense_Mutation_p.R7C|ZC4H2_uc011mov.1_Missense_Mutation_p.R7C|ZC4H2_uc011mow.1_Missense_Mutation_p.R30C|ZC4H2_uc004dvw.1_Missense_Mutation_p.R30C	NM_018684	NP_061154	Q9NQZ6	ZC4H2_HUMAN	zinc finger, C4H2 domain containing	30	Potential.						metal ion binding|protein binding			ovary(1)	1						GCCTTCAAACGAGCCTTGATC	0.483000													13	34					0	0	0.002450	0	0
TSIX	9383	broad.mit.edu	37	X	73044503	73044503	+	RNA	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chrX:73044503C>T	uc004ebn.2	+	1		c.32464C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						TCAAATTTTTCATTTACAAGT	0.333000													8	14					0	0	0.003080	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962840	73962840	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chrX:73962840C>T	uc004eby.2	-	3	2169	c.1552G>A	c.(1552-1554)GAA>AAA	p.E518K		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	518					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TCATCATCTTCCTCTTTGGAA	0.378000													7	12					0	0	0.006214	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83419362	83419362	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chrX:83419362C>T	uc004eej.1	-	2	192	c.115G>A	c.(115-117)GAA>AAA	p.E39K	RPS6KA6_uc011mqt.1_Missense_Mutation_p.E39K|RPS6KA6_uc011mqu.1_5'UTR	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	39					axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						TCTCCCTCTTCCATTGGCTCA	0.299000													14	30					0	0	0.004007	0	0
HTR2C	3358	broad.mit.edu	37	X	114141517	114141517	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chrX:114141517G>A	uc004epu.1	+	6	1644	c.916G>A	c.(916-918)GAA>AAA	p.E306K	HTR2C_uc010nqc.1_Missense_Mutation_p.E306K|HTR2C_uc004epv.1_3'UTR	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	306	Cytoplasmic (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	TATCAACAATGAAAGAAAAGC	0.443000													31	57					0	0	0.007291	0	0
SAGE1	55511	broad.mit.edu	37	X	134989122	134989122	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chrX:134989122G>A	uc004ezh.2	+	8	941	c.774G>A	c.(772-774)ATG>ATA	p.M258I	SAGE1_uc010nry.1_Missense_Mutation_p.M227I|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	258										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AGGAGAAGATGGAAAAGGGCC	0.473000													19	59					0	0	0.007413	0	0
CNGA2	1260	broad.mit.edu	37	X	150911705	150911705	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chrX:150911705G>A	uc004fey.1	+	7	954	c.730G>A	c.(730-732)GAG>AAG	p.E244K		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	244	Helical; Name=H3; (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCACAGCCCTGAGGTGCGCTT	0.532000													28	57					0	0	0.006320	0	0
GABRE	2564	broad.mit.edu	37	X	151124224	151124224	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chrX:151124224G>A	uc004ffi.2	-	7	947	c.893C>T	c.(892-894)TCC>TTC	p.S298F	GABRE_uc011myd.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	298	Helical; (Potential).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GATCCAAAAGGAAACCCAGGA	0.512000													24	45					0	0	0.002780	0	0
TFAM	7019	broad.mit.edu	37	10	60148570	60148570	+	Frame_Shift_Del	DEL	A	-	-	rs78912196		TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr10:60148570delA	uc001jkf.2	+	4	564	c.432delA	c.(430-432)ACAfs	p.T144fs	TFAM_uc001jkg.2_RNA|TFAM_uc001jkh.2_Frame_Shift_Del_p.T144fs	NM_003201	NP_003192	Q00059	TFAM_HUMAN	transcription factor A, mitochondrial precursor	144					DNA-dependent DNA replication|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase I promoter|transcription initiation from mitochondrial promoter	mitochondrial nucleoid	mitochondrial light strand promoter sense binding|protein binding|sequence-specific DNA binding transcription factor activity				0						AAGCTATGACAAAAAAAAAAG	0.269													8	65	---	---	---	---					
POLA2	23649	broad.mit.edu	37	11	65057338	65057340	+	In_Frame_Del	DEL	AAG	-	-			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr11:65057338_65057340delAAG	uc001odj.2	+	13	1581_1583	c.1239_1241delAAG	c.(1237-1242)ACAAGA>ACA	p.R414del	POLA2_uc010rod.1_In_Frame_Del_p.R206del|POLA2_uc001odk.2_In_Frame_Del_p.R111del	NM_002689	NP_002680	Q14181	DPOA2_HUMAN	DNA-directed DNA polymerase alpha 2	414					DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	nucleoplasm	DNA binding				0					Dacarbazine(DB00851)	TTGAAGGCACAAGAAGGTCAGAT	0.389													5	7	---	---	---	---					
CLEC16A	23274	broad.mit.edu	37	16	11272268	11272269	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr16:11272268_11272269delCT	uc002dao.2	+	24	3113_3114	c.2883_2884delCT	c.(2881-2886)GACTCTfs	p.D961fs	CLEC16A_uc002dap.2_Frame_Shift_Del_p.D48fs	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	961_962										ovary(1)|central_nervous_system(1)	2						CGGAAGCAGACTCTAAGCCCAG	0.604													29	56	---	---	---	---					
CASC3	22794	broad.mit.edu	37	17	38324121	38324121	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr17:38324121delT	uc010cwt.1	+	10	1965	c.1670delT	c.(1669-1671)ATCfs	p.I557fs	CASC3_uc002hue.2_Frame_Shift_Del_p.I557fs	NM_007359	NP_031385	O15234	CASC3_HUMAN	metastatic lymph node 51	557	Necessary for localization in cytoplasmic stress granules.				mRNA processing|mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translation|response to stress|RNA splicing	exon-exon junction complex|nuclear speck|perinuclear region of cytoplasm	identical protein binding|RNA binding|ubiquitin protein ligase binding			ovary(1)	1						CAGGGACCAATCTATACCCAT	0.517													27	132	---	---	---	---					
RAB11FIP5	26056	broad.mit.edu	37	2	73316089	73316092	+	Frame_Shift_Del	DEL	GCTG	-	-			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:73316089_73316092delGCTG	uc002siu.3	-	2	1024_1027	c.783_786delCAGC	c.(781-786)GCCAGCfs	p.A261fs	RAB11FIP5_uc002sit.3_Frame_Shift_Del_p.A183fs	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	261_262					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						CCAAGCTCCCGCTGGCTGAGGACA	0.647													8	37	---	---	---	---					
SLC35F5	80255	broad.mit.edu	37	2	114500277	114500277	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr2:114500277delA	uc002tku.1	-	7	1166	c.742delT	c.(742-744)TGCfs	p.C248fs	SLC35F5_uc002tkt.2_RNA|SLC35F5_uc002tkv.2_Frame_Shift_Del_p.C242fs|SLC35F5_uc002tkw.2_Frame_Shift_Del_p.C248fs	NM_025181	NP_079457	Q8WV83	S35F5_HUMAN	solute carrier family 35, member F5	248	Helical; (Potential).				transport	integral to membrane					0						ACCACAAAGCAAAAAAAAAAG	0.343													8	87	---	---	---	---					
ABCA1	19	broad.mit.edu	37	9	107602665	107602666	+	Frame_Shift_Ins	INS	-	C	C	rs2246841	byFrequency	TCGA-D3-A1Q4-06A-11D-A196-08	TCGA-D3-A1Q4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5d11fd9e-86e8-4e08-96cb-9ca66a7fa283	4ac9b47d-a5ec-4d70-aafe-e556cbd8322c	g.chr9:107602665_107602666insC	uc004bcl.2	-	9	1261_1262	c.948_949insG	c.(946-951)GGGCTGfs	p.G316fs		NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	316_317	Extracellular.				Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TTGATCTTCAGCCCCCCTCCCT	0.515													8	37	---	---	---	---					
