Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TNFRSF8	943	broad.mit.edu	37	1	12170128	12170128	+	Silent	SNP	G	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:12170128G>C	uc001atq.2	+	6	765	c.543G>C	c.(541-543)CCG>CCC	p.P181P	TNFRSF8_uc010obc.1_Silent_p.P70P	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	181	Extracellular (Potential).				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		AGCCCACCCCGGTGTCCCCAG	0.627													3	33					0	0	0.000602214	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12919833	12919833	+	Silent	SNP	A	G	G	rs150145103	byFrequency	TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:12919833A>G	uc001aum.1	+	3	660	c.573A>G	c.(571-573)CCA>CCG	p.P191P		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	191											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ATCTAACGCCAATTAAATATC	0.398													4	178					0	0	0.00024832	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12943102	12943102	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:12943102G>A	uc001aun.2	-	2	185	c.114C>T	c.(112-114)TTC>TTT	p.F38F		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	38										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ACAGTGGGGGGAAAAGTTCTG	0.627													37	29					0	0	0.000191422	0	0
CLCNKA	1187	broad.mit.edu	37	1	16352615	16352615	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:16352615C>A	uc001axu.2	+	5	451	c.371C>A	c.(370-372)CCG>CAG	p.P124Q	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Missense_Mutation_p.P124Q|CLCNKA_uc010obw.1_Missense_Mutation_p.P81Q|CLCNKB_uc001axw.3_Intron|CLCNKA_uc010obx.1_5'Flank|CLCNKA_uc010oby.1_5'Flank	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	124					excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	TCTGGAATCCCGGAGCTGAAG	0.453													6	123					8.12818e-05	0.00125949	8.12818e-05	1	0
NBPF1	55672	broad.mit.edu	37	1	16907917	16907919	+	Missense_Mutation	TNP	GGG	TTT	TTT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:16907917_16907919GGG>TTT	uc009vos.1	-	15	2263_2265	c.1375_1377CCC>AAA	c.(1375-1377)CCC>AAA	p.P459K	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Missense_Mutation_p.P188K	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	459	NBPF 2.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		AGTGTTACCTGGGGGCAGATGAT	0.438													12	315					0	0	6.4e-05	0	0
TIE1	7075	broad.mit.edu	37	1	43783328	43783328	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:43783328G>A	uc001ciu.2	+	16	2793	c.2714G>A	c.(2713-2715)GGG>GAG	p.G905E	TIE1_uc010oke.1_Missense_Mutation_p.G860E|TIE1_uc009vwq.2_Missense_Mutation_p.G861E|TIE1_uc010okg.1_Missense_Mutation_p.G550E	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	905	Cytoplasmic (Potential).|Protein kinase.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				AACCTCCTGGGGGCCTGTAAG	0.542													36	22					0	0	0.000491102	0	0
LEPR	3953	broad.mit.edu	37	1	66083654	66083654	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:66083654C>T	uc001dci.2	+	16	2422	c.2220C>T	c.(2218-2220)ATC>ATT	p.I740I	LEPR_uc001dcg.2_Silent_p.I740I|LEPR_uc001dch.2_Silent_p.I740I|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Silent_p.I740I|LEPR_uc001dck.2_Silent_p.I740I	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	740	Extracellular (Potential).|Fibronectin type-III 4.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		CAGTAAATATCGTGCAGTCAC	0.303													20	18					0	0	0.000229342	0	0
RPE65	6121	broad.mit.edu	37	1	68914352	68914352	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:68914352C>T	uc001dei.1	-	2	103	c.49G>A	c.(49-51)GAA>AAA	p.E17K		NM_000329	NP_000320	Q16518	RPE65_HUMAN	retinal pigment epithelium-specific protein	17					visual perception	cytoplasm|plasma membrane	all-trans-retinyl-palmitate hydrolase activity|metal ion binding|retinol isomerase activity			ovary(1)	1						TCCACAGTTTCAAACAGTTTC	0.488													15	14					0	0	0.000422831	0	0
ANKRD13C	81573	broad.mit.edu	37	1	70740419	70740419	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:70740419G>A	uc001dex.3	-	11	1704	c.1378C>T	c.(1378-1380)CCC>TCC	p.P460S	ANKRD13C_uc009wbk.2_Missense_Mutation_p.P425S	NM_030816	NP_110443	Q8N6S4	AN13C_HUMAN	ankyrin repeat domain 13C	460					protein retention in ER lumen|regulation of anoikis|regulation of receptor biosynthetic process	endoplasmic reticulum membrane|perinuclear region of cytoplasm	receptor binding				0						ATCCCTAAGGGAAATTCCTGG	0.383													80	48					0	0	0.000147903	0	0
GBP6	163351	broad.mit.edu	37	1	89849796	89849796	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:89849796G>A	uc001dnf.2	+	10	1887	c.1613G>A	c.(1612-1614)AGA>AAA	p.R538K	GBP6_uc010ost.1_Missense_Mutation_p.R408K	NM_198460	NP_940862	Q6ZN66	GBP6_HUMAN	guanylate binding protein family, member 6	538							GTP binding|GTPase activity			ovary(2)	2		Lung NSC(277;0.0908)		all cancers(265;0.0108)|Epithelial(280;0.0398)		CAGATGGAGAGAGAACACCTA	0.502													7	7					0	0	0.000157383	0	0
SARS	6301	broad.mit.edu	37	1	109772066	109772066	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:109772066C>G	uc001dwu.1	+	4	394	c.319C>G	c.(319-321)CGA>GGA	p.R107G	SARS_uc001dwt.1_Missense_Mutation_p.R107G|SARS_uc001dwv.1_Missense_Mutation_p.R107G|SARS_uc001dww.1_Missense_Mutation_p.R40G|SARS_uc001dwx.1_Missense_Mutation_p.R107G|SARS_uc009wfa.1_Missense_Mutation_p.R107G|SARS_uc001dwy.1_5'UTR|SARS_uc001dwz.1_5'UTR	NM_006513	NP_006504	P49591	SYSC_HUMAN	seryl-tRNA synthetase	107					seryl-tRNA aminoacylation|tRNA processing	cytosol	ATP binding|protein binding|RNA binding|serine-tRNA ligase activity			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0301)|Lung(183;0.0677)|COAD - Colon adenocarcinoma(174;0.116)|Epithelial(280;0.233)	L-Serine(DB00133)	CAAAAAAGTCCGACTCCTCAT	0.498													4	217					0	0	0.00024832	0	0
SYPL2	284612	broad.mit.edu	37	1	110019425	110019425	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:110019425C>T	uc001dxp.2	+	4	648	c.282C>T	c.(280-282)CCC>CCT	p.P94P	SYPL2_uc001dxo.2_Silent_p.P94P|SYPL2_uc010ovk.1_Silent_p.P94P|SYPL2_uc001dxq.2_Silent_p.P2P	NM_001040709	NP_001035799	Q5VXT5	SYPL2_HUMAN	mitsugumin 29	94	Vesicular (Potential).|MARVEL.					integral to membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0436)|READ - Rectum adenocarcinoma(129;0.0698)|Epithelial(280;0.0808)|all cancers(265;0.0869)|LUSC - Lung squamous cell carcinoma(189;0.231)		ATGAGATGCCCCTCTGCGATG	0.577													49	113					0	0	0.000147903	0	0
ATXN7L2	127002	broad.mit.edu	37	1	110030389	110030389	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:110030389G>A	uc001dxr.2	+	5	678	c.663G>A	c.(661-663)GGG>GGA	p.G221G	ATXN7L2_uc001dxs.2_5'Flank	NM_153340	NP_699171	Q5T6C5	AT7L2_HUMAN	ataxin 7-like 2	221										ovary(2)	2		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0426)|Epithelial(280;0.0675)|READ - Rectum adenocarcinoma(129;0.0693)|all cancers(265;0.071)|LUSC - Lung squamous cell carcinoma(189;0.228)		AGCCCAGTGGGACCAGGCTGC	0.572													26	83					0	0	9.22233e-05	0	0
DDX20	11218	broad.mit.edu	37	1	112308795	112308795	+	Silent	SNP	C	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:112308795C>A	uc001ebs.2	+	11	2106	c.1749C>A	c.(1747-1749)ATC>ATA	p.I583I	DDX20_uc010owf.1_Silent_p.I345I|DDX20_uc001ebt.2_Silent_p.I191I	NM_007204	NP_009135	Q9UHI6	DDX20_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	583					assembly of spliceosomal tri-snRNP|ncRNA metabolic process	Cajal body|cytoskeleton|cytosol|spliceosomal complex	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding			lung(1)|kidney(1)	2		all_cancers(81;1.06e-05)|all_epithelial(167;7.36e-06)|all_lung(203;2.44e-05)|Lung NSC(69;4.15e-05)		Lung(183;0.0234)|Colorectal(144;0.0282)|all cancers(265;0.0614)|Epithelial(280;0.0999)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCTTTAAAATCCATCAGCCAT	0.428													17	47					6.33239e-15	1.00296e-13	0.000175454	1	0
PTPN22	26191	broad.mit.edu	37	1	114380409	114380409	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:114380409G>A	uc001eds.2	-	13	1743	c.1613C>T	c.(1612-1614)TCA>TTA	p.S538L	PTPN22_uc009wgq.2_Missense_Mutation_p.S483L|PTPN22_uc010owo.1_Missense_Mutation_p.S294L|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.S538L|PTPN22_uc009wgs.2_Missense_Mutation_p.S411L|PTPN22_uc001edu.2_Missense_Mutation_p.S538L	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	538					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGGCCATGATGAAAAATAAGG	0.388													50	44					0	0	0.000147903	0	0
SPAG17	200162	broad.mit.edu	37	1	118537072	118537072	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:118537072G>A	uc001ehk.2	-	35	5203	c.5135C>T	c.(5134-5136)CCT>CTT	p.P1712L		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1712						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		CCGGAGATTAGGAGGGACAAT	0.413													12	21					0	0	0.00010058	0	0
NBPF7	343505	broad.mit.edu	37	1	120382882	120382883	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:120382882_120382883GG>TT	uc010oxk.1	-	4	1244_1245	c.623_624CC>AA	c.(622-624)CCC>CAA	p.P208Q		NM_001047980	NP_001041445	P0C2Y1	NBPF7_HUMAN	hypothetical protein LOC343505	208	NBPF 1.					cytoplasm				ovary(1)|skin(1)	2	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;3.66e-05)|Lung NSC(69;0.000192)|all_epithelial(167;0.0347)		Lung(183;0.0103)|LUSC - Lung squamous cell carcinoma(189;0.0544)		AGTCTTACCTGGGAGCAGGTGA	0.401													11	209					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	1	148882276	148882276	+	RNA	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:148882276G>A	uc009wkv.1	+	4		c.305G>A								Homo sapiens cDNA, FLJ17483.																		TTTGGCCAAGGAGCAGAAGGA	0.353													21	116					0	0	0.000117367	0	0
SYT11	23208	broad.mit.edu	37	1	155851018	155851018	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:155851018G>C	uc001fmg.2	+	4	1278	c.1015G>C	c.(1015-1017)GGC>CGC	p.G339R	SYT11_uc010pgq.1_Missense_Mutation_p.G32R	NM_152280	NP_689493	Q9BT88	SYT11_HUMAN	synaptotagmin XI	339	C2 2.|Cytoplasmic (Potential).					cell junction|synaptic vesicle membrane	protein binding|transporter activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;0.000162)			CGTCTACTACGGCAGAAAGCG	0.458													4	127					0	0	0.000602214	0	0
TTC24	164118	broad.mit.edu	37	1	156552866	156552866	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:156552866A>T	uc009wsc.1	+	2	243	c.103A>T	c.(103-105)AGC>TGC	p.S35C		NM_001105669	NP_001099139	A2A3L6	TTC24_HUMAN	tetratricopeptide repeat domain 24	315	TPR 7.						binding			pancreas(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GCAGGGCCGGAGCTTTGGCAG	0.657													12	36					0	0	0.000151284	0	0
CD1B	910	broad.mit.edu	37	1	158299825	158299825	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:158299825G>T	uc001frx.2	-	3	532	c.424C>A	c.(424-426)CTG>ATG	p.L142M	CD1B_uc001frw.2_Missense_Mutation_p.L35M	NM_001764	NP_001755	P29016	CD1B_HUMAN	CD1B antigen precursor	142	Extracellular (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to membrane|lysosomal membrane|plasma membrane	protein binding			ovary(2)	2	all_hematologic(112;0.0378)					TTGACACTCAGGAAATCCAAT	0.488													7	108					0.000274275	0.00421088	0.000274275	1	0
OR6N1	128372	broad.mit.edu	37	1	158735788	158735788	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:158735788G>A	uc010piq.1	-	1	685	c.685C>T	c.(685-687)CCC>TCC	p.P229S		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GCAGCTGAGGGAATTCTGAGC	0.498													22	55					0	0	9.22233e-05	0	0
CACNA1E	777	broad.mit.edu	37	1	181680183	181680183	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:181680183C>T	uc001gow.2	+	8	1314	c.1149C>T	c.(1147-1149)TAC>TAT	p.Y383Y	CACNA1E_uc009wxs.2_Silent_p.Y290Y	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	383	Cytoplasmic (Potential).|Binding to the beta subunit (By similarity).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TGAATGGCTACCGTGCCTGGA	0.602													13	27					0	0	0.00010058	0	0
HMCN1	83872	broad.mit.edu	37	1	186158678	186158678	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:186158678G>A	uc001grq.1	+	107	16805	c.16576G>A	c.(16576-16578)GAA>AAA	p.E5526K	HMCN1_uc001grs.1_Missense_Mutation_p.E978K	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	5526					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CAATGATTTGGAATGTGCCTT	0.438													15	19					0	0	0.000175454	0	0
ASPM	259266	broad.mit.edu	37	1	197112543	197112543	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:197112543G>A	uc001gtu.2	-	3	1096	c.839C>T	c.(838-840)TCC>TTC	p.S280F	ASPM_uc001gtv.2_Missense_Mutation_p.S280F|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	280					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						GGAATTAAAGGAAGTTTCAGT	0.343													15	49					0	0	0.000308642	0	0
NR5A2	2494	broad.mit.edu	37	1	200014572	200014572	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:200014572G>A	uc001gvb.2	+	4	529	c.323G>A	c.(322-324)GGA>GAA	p.G108E	NR5A2_uc001gvc.2_Missense_Mutation_p.G62E|NR5A2_uc009wzh.2_Missense_Mutation_p.G68E|NR5A2_uc010pph.1_Missense_Mutation_p.G36E	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	108	Nuclear receptor.				embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					GTCTTATAGGGATTTTTTAAG	0.338													12	18					0	0	0.00010058	0	0
CACNA1S	779	broad.mit.edu	37	1	201058478	201058478	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:201058478G>A	uc001gvv.2	-	6	1035	c.808C>T	c.(808-810)CAT>TAT	p.H270Y		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	270	Extracellular (Potential).|I.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GTGATGCCATGGTTGGGCCCT	0.622													8	19					0	0	0.000157383	0	0
CR1	1378	broad.mit.edu	37	1	207741289	207741289	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:207741289C>T	uc001hfy.2	+	17	2863	c.2723C>T	c.(2722-2724)ACG>ATG	p.T908M	CR1_uc009xcl.1_Missense_Mutation_p.T458M|CR1_uc001hfx.2_Missense_Mutation_p.T1358M|CR1_uc009xck.1_Missense_Mutation_p.T458M	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	908	Extracellular (Potential).|Sushi 14.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						GACAGAGGGACGAGCTTCGAC	0.537													14	32					0	0	0.000219431	0	0
CR1	1378	broad.mit.edu	37	1	207741369	207741369	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:207741369C>T	uc001hfy.2	+	17	2943	c.2803C>T	c.(2803-2805)CCT>TCT	p.P935S	CR1_uc009xcl.1_Missense_Mutation_p.P485S|CR1_uc001hfx.2_Missense_Mutation_p.P1385S|CR1_uc009xck.1_Missense_Mutation_p.P485S	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	935	Extracellular (Potential).|Sushi 14.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						CAGCCCTGCCCCTCGCTGTGG	0.537													8	21					0	0	3.86212e-05	0	0
DISP1	84976	broad.mit.edu	37	1	223179144	223179145	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:223179144_223179145GG>TT	uc001hnu.1	+	8	4552_4553	c.4405_4406GG>TT	c.(4405-4407)GGG>TTG	p.G1469L		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	1469					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		TCATTTAATGGGGGAGGCTGGT	0.426													11	336					0	0	6.4e-05	0	0
ZNF670	93474	broad.mit.edu	37	1	247201303	247201303	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:247201303G>A	uc001icd.1	-	4	789	c.618C>T	c.(616-618)TTC>TTT	p.F206F	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron	NM_033213	NP_149990	Q9BS34	ZN670_HUMAN	zinc finger protein 670	206	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00427)			TTGAATAATTGAAGGCTTTAT	0.343													12	35					0	0	6.40141e-05	0	0
NLRP3	114548	broad.mit.edu	37	1	247588393	247588393	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:247588393C>T	uc001icr.2	+	5	1786	c.1648C>T	c.(1648-1650)CGT>TGT	p.R550C	NLRP3_uc001ics.2_Missense_Mutation_p.R550C|NLRP3_uc001icu.2_Missense_Mutation_p.R550C|NLRP3_uc001icw.2_Missense_Mutation_p.R550C|NLRP3_uc001icv.2_Missense_Mutation_p.R550C|NLRP3_uc010pyw.1_Missense_Mutation_p.R548C|NLRP3_uc001ict.1_Missense_Mutation_p.R548C	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	550					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TCCAGGGAGTCGTTTGAAGCT	0.473													15	20					0	0	0.000422831	0	0
OR2G6	391211	broad.mit.edu	37	1	248685145	248685145	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr1:248685145C>T	uc001ien.1	+	1	198	c.198C>T	c.(196-198)CTC>CTT	p.L66L		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCAGCAACCTCTCGTGTGTGG	0.502													12	24					0	0	6.40141e-05	0	0
SFTPD	6441	broad.mit.edu	37	10	81706217	81706217	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr10:81706217C>A	uc001kbh.2	-	2	242	c.199G>T	c.(199-201)GGT>TGT	p.G67C	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	67	Collagen-like.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			CCCACCCTACCTGGGTCCCCC	0.602													9	6					5.68852e-11	8.98141e-10	0.000274275	1	0
LRIT2	340745	broad.mit.edu	37	10	85984282	85984282	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr10:85984282G>A	uc001kcy.2	-	2	707	c.699C>T	c.(697-699)GGC>GGT	p.G233G	LRIT2_uc010qmc.1_Silent_p.G233G	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	233	LRRCT.					integral to membrane				ovary(2)	2						TGGACAGAGGGCCCTGACATA	0.532													18	18					0	0	7.07596e-05	0	0
GRID1	2894	broad.mit.edu	37	10	87966247	87966247	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr10:87966247G>A	uc001kdl.1	-	3	495	c.394C>T	c.(394-396)CCC>TCC	p.P132S	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	132	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	TCGGGGCTGGGGTTCAGGTGG	0.632										Multiple Myeloma(13;0.14)			9	11					0	0	0.000442599	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98469424	98469424	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr10:98469424C>T	uc001kmq.2	-	2	458	c.330G>A	c.(328-330)GAG>GAA	p.E110E		NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	110						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		AGTCTAGGAACTCCTCGCTGT	0.597													22	13					0	0	0.000229342	0	0
C10orf2	56652	broad.mit.edu	37	10	102749036	102749036	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr10:102749036C>T	uc001ksf.2	+	1	1744	c.1069C>T	c.(1069-1071)CGT>TGT	p.R357C	MRPL43_uc001kry.1_5'Flank|MRPL43_uc010qpu.1_5'Flank|MRPL43_uc001krz.1_5'Flank|MRPL43_uc001ksa.1_5'Flank|MRPL43_uc001ksb.1_5'Flank|MRPL43_uc001ksd.1_5'Flank|MRPL43_uc001ksc.2_5'Flank|MRPL43_uc001kse.2_5'Flank|C10orf2_uc001ksg.2_Missense_Mutation_p.R357C|C10orf2_uc001ksi.2_Intron|C10orf2_uc010qpv.1_Intron|C10orf2_uc001ksh.2_Intron	NM_021830	NP_068602	Q96RR1	PEO1_HUMAN	twinkle isoform A	357			R -> P (in PEOA3).		cell death|mitochondrial DNA replication|protein hexamerization|protein homooligomerization|transcription from mitochondrial promoter	mitochondrial nucleoid	5'-3' DNA helicase activity|ATP binding|protease binding|single-stranded DNA binding			ovary(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)|BRCA - Breast invasive adenocarcinoma(275;0.224)		TCGTATTCTTCGTACCGCCCT	0.567													9	23					0	0	0.000274275	0	0
CALHM1	255022	broad.mit.edu	37	10	105218347	105218347	+	Silent	SNP	C	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr10:105218347C>G	uc001kxe.2	-	1	302	c.162G>C	c.(160-162)GCG>GCC	p.A54A		NM_001001412	NP_001001412	Q8IU99	CAHM1_HUMAN	calcium homeostasis modulator 1	54	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel activity|identical protein binding			ovary(1)	1						GCAGGATGCCCGCGCTGTAGG	0.632													3	22					0	0	6.4e-05	0	0
C10orf79	80217	broad.mit.edu	37	10	105926335	105926335	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr10:105926335T>C	uc001kxw.2	-	23	3066	c.2950A>G	c.(2950-2952)ACT>GCT	p.T984A	C10orf79_uc009xxq.2_Missense_Mutation_p.T292A	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	984											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		CCAAAATCAGTACTCAGACTA	0.373													11	38					0	0	6.40141e-05	0	0
VTI1A	143187	broad.mit.edu	37	10	114224329	114224329	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr10:114224329C>T	uc001kzy.2	+	3	553	c.177C>T	c.(175-177)GTC>GTT	p.V59V	VTI1A_uc001kzz.2_Silent_p.V59V	NM_145206	NP_660207	Q96AJ9	VTI1A_HUMAN	SNARE Vti1a-beta protein	59	Potential.				intracellular protein transport|retrograde transport, endosome to Golgi	SNARE complex	protein transporter activity|SNAP receptor activity			ovary(1)	1		Colorectal(252;0.0314)|Breast(234;0.183)		Epithelial(162;0.0126)|all cancers(201;0.0487)		ATTTGGAAGTCCGAGAGATAC	0.378													5	4					0	0	8.12818e-05	0	0
VAX1	11023	broad.mit.edu	37	10	118896004	118896004	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr10:118896004C>T	uc009xyx.2	-	2	653	c.408G>A	c.(406-408)CAG>CAA	p.Q136Q	VAX1_uc001ldb.1_Silent_p.Q136Q	NM_001112704	NP_001106175	Q5SQQ9	VAX1_HUMAN	ventral anterior homeobox 1 isoform a	136	Homeobox.					nucleus	sequence-specific DNA binding			ovary(2)	2				all cancers(201;0.0108)		AGAGGTTAAGCTGCCGGGCGA	0.667													8	10					0	0	0.000274275	0	0
DEAF1	10522	broad.mit.edu	37	11	688032	688032	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:688032C>T	uc001lqq.1	-	4	1236	c.543G>A	c.(541-543)CTG>CTA	p.L181L	DEAF1_uc009ycf.1_RNA	NM_021008	NP_066288	O75398	DEAF1_HUMAN	deformed epidermal autoregulatory factor 1	181					embryonic skeletal system development|germ cell development|neural tube closure|regulation of mammary gland epithelial cell proliferation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|cytoplasm|extracellular region|nucleus	protein binding|zinc ion binding				0		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;1.76e-27)|Epithelial(43;8.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.55e-21)|BRCA - Breast invasive adenocarcinoma(625;4.83e-05)|Lung(200;0.0259)|LUSC - Lung squamous cell carcinoma(625;0.075)		GGCCGGGAGCCAGAGGGGTTG	0.557													5	24					0	0	3.59834e-05	0	0
TRPM5	29850	broad.mit.edu	37	11	2427989	2427989	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:2427989G>A	uc001lwm.3	-	21	3162	c.3153C>T	c.(3151-3153)GTC>GTT	p.V1051V	TRPM5_uc010qxl.1_Silent_p.V1051V|TRPM5_uc009ydn.2_Silent_p.V1053V	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	1051	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		CCCAGGTGACGACCTTCTGGT	0.617													40	113					0	0	0.000509022	0	0
NAP1L4	4676	broad.mit.edu	37	11	2991099	2991100	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:2991099_2991100GG>TT	uc001lxc.2	-	7	608_609	c.467_468CC>AA	c.(466-468)CCC>CAA	p.P156Q	NAP1L4_uc010qxm.1_Missense_Mutation_p.P156Q|NAP1L4_uc010qxn.1_Missense_Mutation_p.P156Q	NM_005969	NP_005960	Q99733	NP1L4_HUMAN	nucleosome assembly protein 1-like 4	156					nucleosome assembly	chromatin assembly complex|cytoplasm	unfolded protein binding			ovary(1)	1		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00301)|LUSC - Lung squamous cell carcinoma(625;0.211)		GAATTCCTTTGGGATCTGGCTC	0.406													10	338					0	0	6.4e-05	0	0
ART5	116969	broad.mit.edu	37	11	3661298	3661298	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:3661298G>A	uc001lyb.1	-	2	754	c.361C>T	c.(361-363)CGG>TGG	p.R121W	ART5_uc001lyc.1_Missense_Mutation_p.R121W|ART5_uc001lyd.2_Missense_Mutation_p.R121W|ART5_uc009yea.2_Missense_Mutation_p.R121W	NM_053017	NP_443750	Q96L15	NAR5_HUMAN	ADP-ribosyltransferase 5 precursor	121						extracellular region	NAD(P)+-protein-arginine ADP-ribosyltransferase activity			ovary(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0336)|LUSC - Lung squamous cell carcinoma(625;0.19)		TAGAGCTCCCGGGAGCCTCCG	0.592													6	48					0	0	3.59834e-05	0	0
SYT9	143425	broad.mit.edu	37	11	7488027	7488027	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:7488027G>A	uc001mfe.2	+	7	1709	c.1472G>A	c.(1471-1473)CGA>CAA	p.R491Q	SYT9_uc009yfi.2_RNA|uc001mff.1_Intron|uc001mfg.2_5'Flank	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	491	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		CTGCAGAAACGATGACCATGG	0.274													8	38					0	0	0.000442599	0	0
OR10A3	26496	broad.mit.edu	37	11	7960524	7960524	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:7960524G>A	uc010rbi.1	-	1	544	c.544C>T	c.(544-546)CCC>TCC	p.P182S		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGTACCGGGGGAGTCTCACAG	0.433													12	16					0	0	6.40141e-05	0	0
SPON1	10418	broad.mit.edu	37	11	14277214	14277214	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:14277214C>T	uc001mle.2	+	10	1652	c.1114C>T	c.(1114-1116)CCC>TCC	p.P372S		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	372	Spondin.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		ACCCACCATTCCCCAGGAGAA	0.473													26	55					0	0	0.000147802	0	0
ABCC8	6833	broad.mit.edu	37	11	17485076	17485076	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:17485076C>T	uc001mnc.2	-	4	614	c.488G>A	c.(487-489)GGC>GAC	p.G163D	ABCC8_uc010rcy.1_Missense_Mutation_p.G163D	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	163	Extracellular (By similarity).			G -> A (in Ref. 1; AAB02278/AAB02417/ AAB02418).	carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CTGCGAGAAGCCGATGGCGTG	0.567													68	147					0	0	0.000147903	0	0
TPH1	7166	broad.mit.edu	37	11	18062252	18062252	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:18062252G>A	uc001mnp.2	-	1	84	c.58C>T	c.(58-60)CTC>TTC	p.L20F	TPH1_uc009yhe.2_RNA	NM_004179	NP_004170	P17752	TPH1_HUMAN	tryptophan hydroxylase 1	20	ACT.				aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity				0					L-Tryptophan(DB00150)|Tetrahydrobiopterin(DB00360)	GAAAAAATGAGACTTGCTCTT	0.323													13	39					0	0	0.00010058	0	0
UEVLD	55293	broad.mit.edu	37	11	18591901	18591901	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:18591901G>A	uc001mot.2	-	4	297	c.217C>T	c.(217-219)CGT>TGT	p.R73C	UEVLD_uc001mou.2_Missense_Mutation_p.R73C|UEVLD_uc010rde.1_Intron|UEVLD_uc010rdf.1_Missense_Mutation_p.R51C|UEVLD_uc010rdg.1_Intron|UEVLD_uc001mov.2_Missense_Mutation_p.R51C|UEVLD_uc010rdh.1_Missense_Mutation_p.R73C	NM_001040697	NP_001035787	Q8IX04	UEVLD_HUMAN	ubiquitin-conjugating enzyme E2-like isoform a	73	UEV.				cellular carbohydrate metabolic process|protein modification process|protein transport		binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor				0						ATCCAGAAACGAATTGGTATG	0.363													8	14					0	0	0.000157383	0	0
DGKZ	8525	broad.mit.edu	37	11	46392868	46392868	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:46392868C>T	uc001ncn.1	+	8	1265	c.1140C>T	c.(1138-1140)TTC>TTT	p.F380F	DGKZ_uc001nch.1_Silent_p.F208F|DGKZ_uc010rgq.1_Silent_p.F135F|DGKZ_uc001ncj.1_Silent_p.F158F|DGKZ_uc010rgr.1_Silent_p.F157F|DGKZ_uc001nck.1_5'UTR|DGKZ_uc001ncl.2_Silent_p.F192F|DGKZ_uc001ncm.2_Silent_p.F191F|DGKZ_uc009yky.1_Silent_p.F192F|DGKZ_uc010rgs.1_Silent_p.F169F	NM_001105540	NP_001099010	Q13574	DGKZ_HUMAN	diacylglycerol kinase zeta isoform 4	380	Phorbol-ester/DAG-type 2.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell migration|intracellular signal transduction|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of mitotic cell cycle|platelet activation	cytoplasm|lamellipodium|nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|diacylglycerol kinase activity|lipid kinase activity|metal ion binding|protein binding|protein C-terminus binding			pancreas(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(35;0.0259)|Lung(87;0.141)		CTCAGGGATTCCAGCAGAAGT	0.617													15	42					0	0	7.07596e-05	0	0
OR5M3	219482	broad.mit.edu	37	11	56237838	56237838	+	Silent	SNP	A	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:56237838A>G	uc010rjk.1	-	1	136	c.136T>C	c.(136-138)TTA>CTA	p.L46L		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	46	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					ACCTTGATTAACACCATCATG	0.438													5	23					0	0	0.000157383	0	0
ZDHHC5	25921	broad.mit.edu	37	11	57457844	57457845	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:57457844_57457845CC>AA	uc001nkx.1	+	6	1851_1852	c.595_596CC>AA	c.(595-597)CCT>AAT	p.P199N	ZDHHC5_uc001nky.1_Missense_Mutation_p.P146N|ZDHHC5_uc001nkz.1_Missense_Mutation_p.P13N	NM_015457	NP_056272	Q9C0B5	ZDHC5_HUMAN	zinc finger, DHHC domain containing 5	199	Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding			skin(1)	1						ATTCTTCATCCCTGTAGCTGGC	0.525													9	160					0	0	6.4e-05	0	0
DAGLA	747	broad.mit.edu	37	11	61508748	61508748	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:61508748C>T	uc001nsa.2	+	19	2209	c.2098C>T	c.(2098-2100)CCC>TCC	p.P700S		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	700	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		GCAGCCACTCCCCACGGGGCC	0.657													9	17					0	0	3.86212e-05	0	0
SLC22A12	116085	broad.mit.edu	37	11	64359091	64359091	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:64359091G>A	uc001oam.1	+	1	810	c.63G>A	c.(61-63)ACG>ACA	p.T21T	SLC22A12_uc009ypr.1_Silent_p.T21T|SLC22A12_uc001oal.1_Intron|SLC22A12_uc009yps.1_Silent_p.T21T|SLC22A12_uc001oan.1_Silent_p.T21T|SLC22A12_uc009ypt.2_5'Flank	NM_144585	NP_653186	Q96S37	S22AC_HUMAN	urate anion exchanger 1 isoform a	21	Helical; (Potential).				cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			ovary(1)	1						TTCTCCAGACGATGGCTCTGA	0.622													15	29					0	0	0.000422831	0	0
PPP2R5B	5526	broad.mit.edu	37	11	64695858	64695858	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:64695858G>C	uc001oby.2	+	6	1268	c.683G>C	c.(682-684)CGG>CCG	p.R228P	PPP2R5B_uc001obz.2_Missense_Mutation_p.R228P	NM_006244	NP_006235	Q15173	2A5B_HUMAN	beta isoform of regulatory subunit B56, protein	228					signal transduction	cytoplasm|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(2)	2						CTGGGTCTCCGGGCCTACATC	0.587													3	36					0	0	0.00024832	0	0
MALAT1	378938	broad.mit.edu	37	11	65266106	65266106	+	RNA	SNP	T	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:65266106T>C	uc010roh.1	+	1		c.874T>C				NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						AGTTGCGTAATGGAAAGTAAA	0.483													8	29					0	0	0.000274275	0	0
CCDC87	55231	broad.mit.edu	37	11	66359836	66359836	+	Silent	SNP	G	A	A	rs17853294		TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:66359836G>A	uc001oiq.3	-	1	719	c.651C>T	c.(649-651)TTC>TTT	p.F217F	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	217										ovary(1)|skin(1)	2						GCACTTGGGCGAAGCCAGTGC	0.592													7	29					0	0	0.000157383	0	0
FCHSD2	9873	broad.mit.edu	37	11	72553733	72553734	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:72553733_72553734GG>TT	uc009ytl.2	-	17	2079_2080	c.1858_1859CC>AA	c.(1858-1860)CCA>AAA	p.P620K	FCHSD2_uc010rrg.1_Missense_Mutation_p.P484K|FCHSD2_uc001oth.3_Missense_Mutation_p.P564K|ATG16L2_uc009ytj.1_3'UTR	NM_014824	NP_055639	O94868	FCSD2_HUMAN	FCH and double SH3 domains 2	620	SH3 2.						protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(5;3.3e-05)			TAGCACCGATGGGAAAACTCCA	0.441													11	270					0	0	6.4e-05	0	0
INTS4	92105	broad.mit.edu	37	11	77649828	77649828	+	Missense_Mutation	SNP	G	A	A	rs151018256	byFrequency	TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:77649828G>A	uc001oys.2	-	10	1062	c.1034C>T	c.(1033-1035)TCG>TTG	p.S345L	INTS4_uc001oyt.2_RNA|INTS4_uc001oyu.1_Missense_Mutation_p.S345L	NM_033547	NP_291025	Q96HW7	INT4_HUMAN	integrator complex subunit 4	345					snRNA processing	integrator complex	protein binding			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		Epithelial(5;1.13e-46)|all cancers(3;8.92e-44)|BRCA - Breast invasive adenocarcinoma(5;8.4e-26)|OV - Ovarian serous cystadenocarcinoma(8;1.05e-23)			AAACTCCCCCGAACTGTAAAG	0.468													27	53					0	0	0.000227799	0	0
FAT3	120114	broad.mit.edu	37	11	92620171	92620171	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:92620171G>A	uc001pdj.3	+	24	12960	c.12943G>A	c.(12943-12945)GGG>AGG	p.G4315R	FAT3_uc001pdi.3_Missense_Mutation_p.G755R	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4315	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGAAGACAAAGGGGTTGATGA	0.488										TCGA Ovarian(4;0.039)			41	49					0	0	0.000147903	0	0
KIAA1377	57562	broad.mit.edu	37	11	101818765	101818765	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:101818765C>T	uc001pgm.2	+	4	668	c.398C>T	c.(397-399)TCC>TTC	p.S133F	KIAA1377_uc001pgn.2_Missense_Mutation_p.S89F|KIAA1377_uc009yxa.1_5'UTR	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	133							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		TCTTTAGTTTCCCGAAAACCA	0.328													13	13					0	0	0.000151284	0	0
DSCAML1	57453	broad.mit.edu	37	11	117310603	117310603	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:117310603C>T	uc001prh.1	-	22	4094	c.4092G>A	c.(4090-4092)ATG>ATA	p.M1364I		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1304	Extracellular (Potential).|Ig-like C2-type 10.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GAACATCTTTCATCCAAGGTG	0.567													15	27					0	0	0.000422831	0	0
TRIM29	23650	broad.mit.edu	37	11	119993696	119993696	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:119993696G>A	uc001pwz.2	-	5	1525	c.1401C>T	c.(1399-1401)ACC>ACT	p.T467T	TRIM29_uc001pwx.2_5'Flank|TRIM29_uc001pwy.2_5'UTR|TRIM29_uc010rzi.1_Silent_p.T206T|TRIM29_uc010rzj.1_Silent_p.T200T|TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	467					transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		ATCTCTTCATGGTGTCCGGTG	0.587													18	18					0	0	0.000132079	0	0
SORL1	6653	broad.mit.edu	37	11	121393299	121393299	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:121393299C>T	uc001pxx.2	+	10	1489	c.1409C>T	c.(1408-1410)TCC>TTC	p.S470F		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	470	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GTATAGCTTTCCCAGGGCTGT	0.577													24	33					0	0	0.000586117	0	0
PKNOX2	63876	broad.mit.edu	37	11	125281707	125281707	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:125281707C>T	uc001qbu.2	+	10	1196	c.882C>T	c.(880-882)GTC>GTT	p.V294V	PKNOX2_uc010saz.1_Silent_p.V265V|PKNOX2_uc010sba.1_Silent_p.V265V|PKNOX2_uc010sbb.1_Silent_p.V230V|PKNOX2_uc001qbv.2_Silent_p.V59V	NM_022062	NP_071345	Q96KN3	PKNX2_HUMAN	PBX/knotted 1 homeobox 2	294	Homeobox.					nucleus	sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(109;0.00234)|all_lung(97;0.0191)|Lung NSC(97;0.0196)|Medulloblastoma(222;0.0447)|all_neural(223;0.116)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.117)		AACGAGGAGTCTTGCCCAAGC	0.517													12	18					0	0	0.000151284	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130339294	130339294	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:130339294G>A	uc010scd.1	+	5	1680	c.1680G>A	c.(1678-1680)GTG>GTA	p.V560V		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	560	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		GAGTGAGGGTGAAATACCGAT	0.682													9	12					0	0	0.000274275	0	0
NCAPD3	23310	broad.mit.edu	37	11	134047153	134047153	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr11:134047153G>A	uc001qhd.1	-	23	3588	c.2982C>T	c.(2980-2982)ATC>ATT	p.I994I	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	994	HEAT 4.				cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		TCTGCTTCCGGATGAATGGGT	0.468													5	26					0	0	3.59834e-05	0	0
CACNA1C	775	broad.mit.edu	37	12	2797832	2797832	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:2797832G>A	uc009zdu.1	+	49	6566	c.6253G>A	c.(6253-6255)GGC>AGC	p.G2085S	CACNA1C_uc009zdv.1_Missense_Mutation_p.G1999S|CACNA1C_uc001qkb.2_Missense_Mutation_p.G2002S|CACNA1C_uc001qkc.2_Missense_Mutation_p.G2021S|CACNA1C_uc001qke.2_Missense_Mutation_p.G1991S|CACNA1C_uc001qkf.2_Missense_Mutation_p.G2010S|CACNA1C_uc001qjz.2_Missense_Mutation_p.G2002S|CACNA1C_uc001qkd.2_Missense_Mutation_p.G2021S|CACNA1C_uc001qkg.2_Missense_Mutation_p.G2008S|CACNA1C_uc009zdw.1_Missense_Mutation_p.G2043S|CACNA1C_uc001qkh.2_Missense_Mutation_p.G2010S|CACNA1C_uc001qkl.2_Missense_Mutation_p.G2050S|CACNA1C_uc001qkn.2_Missense_Mutation_p.G2002S|CACNA1C_uc001qko.2_Missense_Mutation_p.G2022S|CACNA1C_uc001qkp.2_Missense_Mutation_p.G2002S|CACNA1C_uc001qkr.2_Missense_Mutation_p.G2019S|CACNA1C_uc001qku.2_Missense_Mutation_p.G2037S|CACNA1C_uc001qkq.2_Missense_Mutation_p.G2030S|CACNA1C_uc001qks.2_Missense_Mutation_p.G2002S|CACNA1C_uc001qkt.2_Missense_Mutation_p.G2021S|CACNA1C_uc001qki.1_Missense_Mutation_p.G1809S|CACNA1C_uc001qkj.1_Missense_Mutation_p.G1773S|CACNA1C_uc001qkk.1_Missense_Mutation_p.G1738S|CACNA1C_uc001qkm.1_Missense_Mutation_p.G1798S|CACNA1C_uc010sea.1_Missense_Mutation_p.G693S|uc001qkx.1_Intron|CACNA1C_uc001qky.1_Missense_Mutation_p.G320S	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	2085	Poly-Gly.|Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CACCCCCGGTGGCGGGGGCAG	0.706													8	8					0	0	0.000442599	0	0
CD163	9332	broad.mit.edu	37	12	7651771	7651771	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:7651771C>T	uc001qsz.3	-	4	599	c.471G>A	c.(469-471)TTG>TTA	p.L157L	CD163_uc001qta.3_Silent_p.L157L|CD163_uc009zfw.2_Silent_p.L157L	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	157	Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GCCTCATTTCCAAATTGGATC	0.413													12	72					0	0	0.000219431	0	0
GUCY2C	2984	broad.mit.edu	37	12	14766074	14766074	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:14766074C>T	uc001rcd.2	-	27	3336	c.3199G>A	c.(3199-3201)GAC>AAC	p.D1067N		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	1067	Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						CTCTCCTTGTCTGTGGTATTC	0.438													5	43					0	0	3.59834e-05	0	0
ABCC9	10060	broad.mit.edu	37	12	22078906	22078906	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:22078906C>T	uc001rfi.1	-	3	396	c.376G>A	c.(376-378)GAA>AAA	p.E126K	ABCC9_uc001rfh.2_Missense_Mutation_p.E126K|ABCC9_uc001rfj.1_Missense_Mutation_p.E126K|ABCC9_uc001rfk.2_Missense_Mutation_p.E126K|ABCC9_uc001rfl.1_Missense_Mutation_p.E126K	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	126	Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TTTGATGTTTCGATATTATGA	0.383													13	46					0	0	0.000151284	0	0
SOX5	6660	broad.mit.edu	37	12	23893916	23893916	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:23893916A>T	uc001rfw.2	-	5	728	c.626T>A	c.(625-627)CTG>CAG	p.L209Q	SOX5_uc001rfx.2_Missense_Mutation_p.L196Q|SOX5_uc001rfy.2_Missense_Mutation_p.L196Q|SOX5_uc010siv.1_Missense_Mutation_p.L196Q|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Missense_Mutation_p.L161Q	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	209	Potential.				transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						GAGGCTGGTCAGCTGGTTGAT	0.468													8	10					0	0	0.000157383	0	0
CNTN1	1272	broad.mit.edu	37	12	41463790	41463790	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:41463790G>T	uc001rmm.1	+	24	3123	c.3010G>T	c.(3010-3012)GGC>TGC	p.G1004C	CNTN1_uc001rmn.1_Missense_Mutation_p.G993C	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	1004					axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				AAGTCTTCTCGGCTTACTGCT	0.468													4	44					8.12818e-05	0.00125949	8.12818e-05	1	0
ARF3	377	broad.mit.edu	37	12	49334741	49334741	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:49334741G>A	uc001rsr.2	-	2	391	c.138C>T	c.(136-138)ATC>ATT	p.I46I	ARF3_uc010smc.1_Silent_p.I46I	NM_001659	NP_001650	P61204	ARF3_HUMAN	ADP-ribosylation factor 3	46					protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	Golgi apparatus|perinuclear region of cytoplasm	GTP binding|GTPase activity				0						CAATGGTAGGGATGGTGGTGA	0.577													23	36					0	0	0.000375601	0	0
KRT77	374454	broad.mit.edu	37	12	53096993	53096993	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:53096993C>T	uc001saw.2	-	1	255	c.226G>A	c.(226-228)GGG>AGG	p.G76R	KRT77_uc009zmi.2_5'UTR	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	76	Head.					keratin filament	structural molecule activity			ovary(1)	1						GTGCTCCTCCCCATTAGATTA	0.587													5	11					0	0	0.000602214	0	0
TENC1	23371	broad.mit.edu	37	12	53452857	53452857	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:53452857C>T	uc001sbp.2	+	18	1567	c.1432C>T	c.(1432-1434)CTG>TTG	p.L478L	TENC1_uc001sbl.2_Silent_p.L354L|TENC1_uc001sbn.2_Silent_p.L488L|TENC1_uc001sbq.2_5'UTR|TENC1_uc001sbr.2_RNA|TENC1_uc009zmr.2_5'UTR|TENC1_uc001sbs.2_5'Flank	NM_170754	NP_736610	Q63HR2	TENC1_HUMAN	tensin like C1 domain containing phosphatase	478					intracellular signal transduction|negative regulation of cell proliferation	focal adhesion	metal ion binding|phosphoprotein phosphatase activity|protein binding			ovary(1)|pancreas(1)	2						CCGGGGTCCCCTGGATGGCAG	0.662													6	36					0	0	8.12818e-05	0	0
DYRK2	8445	broad.mit.edu	37	12	68051851	68051851	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:68051851C>T	uc001str.3	+	3	1566	c.1164C>T	c.(1162-1164)TAC>TAT	p.Y388Y	DYRK2_uc001sts.3_Silent_p.Y315Y	NM_006482	NP_006473	Q92630	DYRK2_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	388	Protein kinase.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|positive regulation of glycogen biosynthetic process|smoothened signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|manganese ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(2)|breast(1)|central_nervous_system(1)	4			Lung(24;6.81e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(7;0.000573)		CGCGTTTTTACCGGGCTCCAG	0.507													14	20					0	0	0.000219431	0	0
PTPRB	5787	broad.mit.edu	37	12	70954528	70954528	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:70954528G>A	uc001swb.3	-	15	3731	c.3701C>T	c.(3700-3702)CCT>CTT	p.P1234L	PTPRB_uc010sto.1_Missense_Mutation_p.P1144L|PTPRB_uc010stp.1_Missense_Mutation_p.P1144L|PTPRB_uc001swc.3_Missense_Mutation_p.P1452L|PTPRB_uc001swa.3_Missense_Mutation_p.P1364L|PTPRB_uc001swd.3_Missense_Mutation_p.P1451L|PTPRB_uc009zrr.1_Missense_Mutation_p.P1331L	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1234	Fibronectin type-III 14.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CTTCCTTCCAGGAACAAGGCC	0.488													8	12					0	0	0.000157383	0	0
GLIPR1	11010	broad.mit.edu	37	12	75875633	75875634	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:75875633_75875634CC>TT	uc001sxs.2	+	2	342_343	c.194_195CC>TT	c.(193-195)GCC>GTT	p.A65V	GLIPR1_uc009zsb.1_Missense_Mutation_p.A65V	NM_006851	NP_006842	P48060	GLIP1_HUMAN	GLI pathogenesis-related 1 precursor	65					cellular lipid metabolic process	extracellular region|integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3						CCAGCACTAGCCCAAATTGCAA	0.455													14	53					0	0	6.4e-05	0	0
C12orf63	374467	broad.mit.edu	37	12	97043781	97043781	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:97043781G>A	uc001tet.1	+	2	156	c.78G>A	c.(76-78)AAG>AAA	p.K26K		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	26										skin(6)|ovary(1)	7						CTAAAGAAAAGGACCGAGGAG	0.328													12	33					0	0	0.00010058	0	0
SLC17A8	246213	broad.mit.edu	37	12	100811903	100811903	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:100811903C>T	uc010svi.1	+	11	1707	c.1394C>T	c.(1393-1395)CCC>CTC	p.P465L	SLC17A8_uc009ztx.2_Missense_Mutation_p.P415L	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	465	Helical; (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						ATGGTCTGTCCCCTCATTGTC	0.493													8	49					0	0	0.000274275	0	0
NR1H4	9971	broad.mit.edu	37	12	100928758	100928758	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:100928758G>A	uc001tht.1	+	4	747	c.719G>A	c.(718-720)GGT>GAT	p.G240D	NR1H4_uc001thp.1_Missense_Mutation_p.G226D|NR1H4_uc001thq.1_Missense_Mutation_p.G230D|NR1H4_uc010svj.1_RNA|NR1H4_uc001thr.1_Missense_Mutation_p.G230D|NR1H4_uc010svk.1_Missense_Mutation_p.G179D|NR1H4_uc001ths.1_Missense_Mutation_p.G236D	NM_005123	NP_005114	Q96RI1	NR1H4_HUMAN	nuclear receptor subfamily 1, group H, member 4	240					bile acid metabolic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						GACAGTGAAGGTCGTGACTTG	0.423													5	30					0	0	3.59834e-05	0	0
PLBD2	196463	broad.mit.edu	37	12	113826404	113826404	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:113826404C>T	uc001tve.2	+	12	1778	c.1743C>T	c.(1741-1743)TTC>TTT	p.F581F	PLBD2_uc001tvf.2_Silent_p.F549F	NM_173542	NP_775813	Q8NHP8	PLBL2_HUMAN	phospholipase B domain containing 2 isoform 1	581					lipid catabolic process	lysosomal lumen	hydrolase activity				0						TCTGGAAGTTCGCGCCTGTCA	0.667													8	14					0	0	3.86212e-05	0	0
TCTN2	79867	broad.mit.edu	37	12	124156062	124156062	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr12:124156062C>T	uc001ufp.2	+	2	219	c.91C>T	c.(91-93)CCT>TCT	p.P31S	TCTN2_uc009zya.2_Missense_Mutation_p.P31S	NM_024809	NP_079085	Q96GX1	TECT2_HUMAN	tectonic family member 2 isoform 1	31	Extracellular (Potential).				cilium assembly|smoothened signaling pathway	integral to membrane				ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000163)|Epithelial(86;0.000502)|all cancers(50;0.00451)		AGCTTTCATCCCTCCTTTTAT	0.617													8	22					0	0	3.86212e-05	0	0
FLT3	2322	broad.mit.edu	37	13	28610179	28610179	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr13:28610179C>T	uc001urw.2	-	11	1393	c.1311G>A	c.(1309-1311)AGG>AGA	p.R437R	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Silent_p.R437R	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	437	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	CTTGAGGTTTCCCTATAGAAA	0.313			Mis|O		AML|ALL								23	27					0	0	0.00047179	0	0
MYCBP2	23077	broad.mit.edu	37	13	77792023	77792023	+	Silent	SNP	C	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr13:77792023C>G	uc001vkf.2	-	22	2986	c.2895G>C	c.(2893-2895)ACG>ACC	p.T965T	MYCBP2_uc010aev.2_Silent_p.T369T	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	965	RCC1 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		AAAGTACTGCCGTATGGTTGC	0.368													3	28					0	0	0.000602214	0	0
ZIC2	7546	broad.mit.edu	37	13	100635375	100635375	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr13:100635375C>T	uc001von.2	+	1	1057	c.1057C>T	c.(1057-1059)CAC>TAC	p.H353Y		NM_007129	NP_009060	O95409	ZIC2_HUMAN	zinc finger protein of the cerebellum 2	353	C2H2-type 3.				brain development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|visual perception	cytoplasm|nucleus	chromatin DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CCTCAAGATCCACAAAAGGAC	0.647													7	7					0	0	8.12818e-05	0	0
OR4N5	390437	broad.mit.edu	37	14	20612119	20612119	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr14:20612119C>T	uc010tla.1	+	1	225	c.225C>T	c.(223-225)TTC>TTT	p.F75F		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	75	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		CCTACTCCTTCATTGTGGTTC	0.463													17	21					0	0	7.07596e-05	0	0
ADCY4	196883	broad.mit.edu	37	14	24799092	24799092	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr14:24799092G>A	uc001wov.2	-	8	1197	c.1191C>T	c.(1189-1191)AAC>AAT	p.N397N	ADCY4_uc001wow.2_Silent_p.N397N|ADCY4_uc010toh.1_Silent_p.N83N|ADCY4_uc001wox.2_Silent_p.N397N|ADCY4_uc001woy.2_Silent_p.N397N	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	397	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		CCTCCATGTGGTTAGCCAGTG	0.582													16	24					0	0	0.000132079	0	0
AKAP6	9472	broad.mit.edu	37	14	33014963	33014963	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr14:33014963C>T	uc001wrq.2	+	4	1274	c.1104C>T	c.(1102-1104)ACC>ACT	p.T368T	AKAP6_uc010aml.2_Silent_p.T365T	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	368					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		AAAATGCAACCCCCAAACGAA	0.448													21	27					0	0	0.000295444	0	0
RALGAPA1	253959	broad.mit.edu	37	14	36039821	36039821	+	Splice_Site	SNP	A	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr14:36039821A>G	uc001wti.2	-	38	6369	c.5978_splice	c.e38+1	p.F1993_splice	RALGAPA1_uc010amp.2_Splice_Site|RALGAPA1_uc001wtj.2_Splice_Site_p.F1993_splice|RALGAPA1_uc010tpv.1_Splice_Site_p.F2006_splice|RALGAPA1_uc010tpw.1_Splice_Site_p.F2040_splice	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1						activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						AAAAAAGGATACAAGTTTTGA	0.323													6	33					0	0	0.000157383	0	0
C14orf106	55320	broad.mit.edu	37	14	45711340	45711340	+	Missense_Mutation	SNP	G	A	A	rs34168608	byFrequency	TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr14:45711340G>A	uc001wwf.2	-	4	1499	c.1040C>T	c.(1039-1041)CCA>CTA	p.P347L	C14orf106_uc010anh.2_RNA	NM_018353	NP_060823	Q6P0N0	M18BP_HUMAN	chromosome 14 open reading frame 106	347					cell division|CenH3-containing nucleosome assembly at centromere|mitosis	chromosome, centromeric region|nucleoplasm	DNA binding				0						ATGAAGTCTTGGTGTTGCAAG	0.353													12	61					0	0	0.000219431	0	0
SOS2	6655	broad.mit.edu	37	14	50671028	50671029	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr14:50671028_50671029GG>TT	uc001wxs.3	-	2	284_285	c.186_187CC>AA	c.(184-189)GCCCAG>GCAAAG	p.Q63K	SOS2_uc010tql.1_Missense_Mutation_p.Q63K	NM_006939	NP_008870	Q07890	SOS2_HUMAN	son of sevenless homolog 2	63					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	DNA binding|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2	all_epithelial(31;0.000822)|Breast(41;0.0065)					GTCCTTGGCTGGGCCATGCATA	0.347													9	221					0	0	6.4e-05	0	0
ATL1	51062	broad.mit.edu	37	14	51079995	51079995	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr14:51079995C>T	uc001wyf.3	+	7	890	c.649C>T	c.(649-651)CGA>TGA	p.R217*	ATL1_uc001wyd.3_Nonsense_Mutation_p.R217*|ATL1_uc001wye.3_Nonsense_Mutation_p.R217*	NM_015915	NP_056999	Q8WXF7	ATLA1_HUMAN	atlastin GTPase 1 isoform a	217	Cytoplasmic.		R -> Q (in SPG3; alters endoplasmic reticulum morphology).		axonogenesis|cell death|endoplasmic reticulum organization|protein homooligomerization	axon|endoplasmic reticulum membrane|Golgi cis cisterna|Golgi membrane|integral to membrane|microsome	GTP binding|GTPase activity|identical protein binding			skin(3)|central_nervous_system(1)	4						ATTTCTTGTTCGAGACTGGAG	0.368													5	21					0	0	8.12818e-05	0	0
CCDC88C	440193	broad.mit.edu	37	14	91791183	91791183	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr14:91791183C>T	uc010aty.2	-	12	1381	c.1282G>A	c.(1282-1284)GAA>AAA	p.E428K		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	428	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TGGGCAGATTCGTTCATGCTC	0.572													6	36					0	0	3.59834e-05	0	0
TDRD9	122402	broad.mit.edu	37	14	104492471	104492471	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr14:104492471C>T	uc001yom.3	+	27	3049	c.3019C>T	c.(3019-3021)CAG>TAG	p.Q1007*	TDRD9_uc001yon.3_Nonsense_Mutation_p.Q745*	NM_153046	NP_694591	Q8NDG6	TDRD9_HUMAN	tudor domain containing 9	1007					cell differentiation|DNA methylation involved in gamete generation|fertilization|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	nucleus|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0768)				ACTTCCTTTCCAGGTAAGGTA	0.433													10	45					0	0	3.86212e-05	0	0
SLC12A6	9990	broad.mit.edu	37	15	34544408	34544408	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr15:34544408G>A	uc001zhw.2	-	9	1460	c.1296C>T	c.(1294-1296)ATC>ATT	p.I432I	SLC12A6_uc001zhv.2_Silent_p.I381I|SLC12A6_uc001zhx.2_Silent_p.I417I|SLC12A6_uc001zhy.2_RNA|SLC12A6_uc001zhz.2_RNA|SLC12A6_uc001zia.2_Silent_p.I373I|SLC12A6_uc001zib.2_Silent_p.I423I|SLC12A6_uc001zic.2_Silent_p.I432I|SLC12A6_uc010bau.2_Silent_p.I432I|SLC12A6_uc001zid.2_Silent_p.I373I|SLC12A6_uc001zht.2_5'Flank|SLC12A6_uc001zhu.2_Silent_p.I244I	NM_133647	NP_598408	Q9UHW9	S12A6_HUMAN	solute carrier family 12, member 6 isoform a	432	Cytoplasmic (Potential).				angiogenesis|cellular hypotonic salinity response|potassium ion transport|sodium ion transport	basolateral plasma membrane|integral to membrane	potassium:chloride symporter activity			central_nervous_system(5)|ovary(1)|skin(1)	7		all_lung(180;2.78e-08)		all cancers(64;3.43e-17)|GBM - Glioblastoma multiforme(113;2.6e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0301)	Potassium Chloride(DB00761)	GAATGCCCTGGATTGAAGTGA	0.398													8	18					0	0	0.000442599	0	0
MEIS2	4212	broad.mit.edu	37	15	37385869	37385869	+	Silent	SNP	G	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr15:37385869G>T	uc001zjr.2	-	6	1589	c.552C>A	c.(550-552)CCC>CCA	p.P184P	MEIS2_uc001zjl.2_Silent_p.P171P|MEIS2_uc010ucj.1_Silent_p.P171P|MEIS2_uc001zjm.2_Silent_p.P96P|MEIS2_uc001zjn.2_Silent_p.P38P|MEIS2_uc001zjo.2_Silent_p.P184P|MEIS2_uc001zjp.2_Silent_p.P184P|MEIS2_uc001zjs.2_Silent_p.P184P|MEIS2_uc001zju.2_Silent_p.P171P|MEIS2_uc001zjt.2_Silent_p.P184P	NM_170675	NP_733775	O14770	MEIS2_HUMAN	Meis homeobox 2 isoform c	184					negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)	2		all_epithelial(112;9.77e-14)|Lung NSC(122;1.42e-09)|all_lung(180;2.2e-08)|Ovarian(310;0.134)|Melanoma(134;0.155)		all cancers(64;9.33e-21)|GBM - Glioblastoma multiforme(113;1.71e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0288)		CGAGGTCGATGGGCATTTTCC	0.483													7	110					0.000157383	0.00243118	0.000157383	1	0
SLC12A1	6557	broad.mit.edu	37	15	48537068	48537068	+	Silent	SNP	A	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr15:48537068A>G	uc001zwn.3	+	11	1635	c.1419A>G	c.(1417-1419)GAA>GAG	p.E473E	SLC12A1_uc010uew.1_Silent_p.E279E|SLC12A1_uc010bem.2_Silent_p.E473E|SLC12A1_uc001zwq.3_Silent_p.E244E|SLC12A1_uc001zwr.3_Silent_p.E200E	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	473					potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	GTCGACATGAACCATGTCAGT	0.408													10	31					0	0	6.40141e-05	0	0
DMXL2	23312	broad.mit.edu	37	15	51772772	51772772	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr15:51772772C>T	uc002abf.2	-	24	6756	c.6531G>A	c.(6529-6531)ATG>ATA	p.M2177I	DMXL2_uc002abd.2_Missense_Mutation_p.M247I|DMXL2_uc010ufy.1_Missense_Mutation_p.M2177I|DMXL2_uc010bfa.2_Missense_Mutation_p.M1541I	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	2177						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		ATTTGAGTTCCATCCTTACTG	0.403													10	21					0	0	6.40141e-05	0	0
UNC13C	440279	broad.mit.edu	37	15	54914531	54914531	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr15:54914531C>T	uc002ack.2	+	29	6113	c.6113C>T	c.(6112-6114)TCC>TTC	p.S2038F	UNC13C_uc002acm.2_5'UTR	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	2038					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TCAGGTCGTTCCTCCAAAGAT	0.403													6	20					0	0	3.59834e-05	0	0
CCPG1	9236	broad.mit.edu	37	15	55652369	55652369	+	Silent	SNP	T	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr15:55652369T>C	uc002acv.1	-	8	1767	c.1602A>G	c.(1600-1602)AGA>AGG	p.R534R	CCPG1_uc002acy.2_Silent_p.R534R|CCPG1_uc002acu.1_Silent_p.R390R|CCPG1_uc002acw.1_Silent_p.R259R|CCPG1_uc002acx.2_Intron|CCPG1_uc010bfk.1_Silent_p.R534R|CCPG1_uc002acz.1_Silent_p.R534R	NM_020739	NP_065790	Q9ULG6	CCPG1_HUMAN	cell cycle progression 1 isoform 2	534	Lumenal (Potential).				cell cycle	integral to membrane				ovary(1)	1				all cancers(107;0.0354)		CTTTAAAGTGTCTGAAAGTGG	0.333													38	89					0	0	0.000109025	0	0
LOC645752	645752	broad.mit.edu	37	15	78211517	78211517	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr15:78211517C>G	uc010bky.2	-	11	1014	c.250G>C	c.(250-252)GTC>CTC	p.V84L		NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						TTGCTCAGGACACTCAAGGCC	0.557													3	112					0	0	6.4e-05	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79068669	79068669	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr15:79068669G>A	uc002bej.3	-	11	1778	c.1567C>T	c.(1567-1569)CTC>TTC	p.L523F	ADAMTS7_uc010und.1_Intron|ADAMTS7_uc002bek.1_Missense_Mutation_p.L523F	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	523	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						TCCCCACTGAGACACCACTAC	0.622													24	25					0	0	0.000117367	0	0
UNC45A	55898	broad.mit.edu	37	15	91492593	91492593	+	Silent	SNP	G	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr15:91492593G>T	uc002bqg.2	+	14	2266	c.1926G>T	c.(1924-1926)GCG>GCT	p.A642A	UNC45A_uc002bqd.2_Silent_p.A627A|UNC45A_uc010uqr.1_Silent_p.A34A|UNC45A_uc002bqi.2_5'UTR	NM_018671	NP_061141	Q9H3U1	UN45A_HUMAN	smooth muscle cell associated protein-1 isoform	642					cell differentiation|muscle organ development	nucleus|perinuclear region of cytoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			TGCTGGCAGCGGGTGTGGTGT	0.622													6	162					0.000274275	0.00421088	0.000274275	1	0
ZNF205	7755	broad.mit.edu	37	16	3169723	3169723	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr16:3169723C>G	uc002cub.2	+	7	1197	c.1062C>G	c.(1060-1062)CAC>CAG	p.H354Q	ZNF205_uc002cua.2_Missense_Mutation_p.H354Q	NM_001042428	NP_001035893	O95201	ZN205_HUMAN	zinc finger protein 205	354	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						TCATCCAGCACCAGATCATCC	0.672													11	34					0	0	0.000219431	0	0
UBN1	29855	broad.mit.edu	37	16	4922917	4922917	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr16:4922917G>A	uc002cyb.2	+	13	2078	c.1739G>A	c.(1738-1740)GGG>GAG	p.G580E	UBN1_uc010uxw.1_Missense_Mutation_p.G580E|UBN1_uc002cyc.2_Missense_Mutation_p.G580E	NM_001079514	NP_001072982	Q9NPG3	UBN1_HUMAN	ubinuclein 1	580					chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						CGAGGCCATGGGCACCTGACT	0.468													13	31					0	0	0.000308642	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857193	9857193	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr16:9857193G>A	uc002czo.3	-	13	4756	c.4208C>T	c.(4207-4209)TCG>TTG	p.S1403L	GRIN2A_uc010uym.1_Missense_Mutation_p.S1403L|GRIN2A_uc010uyn.1_3'UTR|GRIN2A_uc002czr.3_3'UTR	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1403	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCTCAAGGACGACCGAAGATA	0.512													20	34					0	0	0.000375601	0	0
CIITA	4261	broad.mit.edu	37	16	11012339	11012339	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr16:11012339C>T	uc002dai.3	+	16	3238	c.3105C>T	c.(3103-3105)CTC>CTT	p.L1035L	CIITA_uc002daj.3_Silent_p.L1036L|CIITA_uc002dak.3_Silent_p.L451L	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	1035	LRR 2.				interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						CCTACAAACTCGCCGAGGCCC	0.632			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|						OREG0023606	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	129					0	0	0.000279167	0	0
TNFRSF17	608	broad.mit.edu	37	16	12061597	12061597	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr16:12061597G>A	uc002dbv.2	+	3	666	c.448G>A	c.(448-450)GAG>AAG	p.E150K	TNFRSF17_uc010buy.2_3'UTR|TNFRSF17_uc010buz.2_Missense_Mutation_p.E101K	NM_001192	NP_001183	Q02223	TNR17_HUMAN	tumor necrosis factor receptor superfamily,	150	Cytoplasmic (Potential).				cell proliferation|multicellular organismal development	endomembrane system|integral to membrane|plasma membrane					0						CCCAGCTATGGAGGAAGGCGC	0.502			T	IL2	intestinal T-cell lymphoma								28	38					0	0	0.000279167	0	0
ACSM2A	123876	broad.mit.edu	37	16	20497957	20497957	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr16:20497957G>A	uc010bwe.2	+	15	1930	c.1691G>A	c.(1690-1692)CGA>CAA	p.R564Q	ACSM2A_uc002dhf.3_Missense_Mutation_p.R564Q|ACSM2A_uc002dhg.3_Missense_Mutation_p.R564Q|ACSM2A_uc010vay.1_Missense_Mutation_p.R485Q|ACSM2A_uc002dhh.3_Missense_Mutation_p.R194Q|uc002dhi.1_5'Flank	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	564					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						GCCAAGCTTCGAGACAAGGAG	0.463													32	24					0	0	0.000159656	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53686639	53686640	+	Nonsense_Mutation	DNP	CG	AT	AT	rs141979202	by1000genomes	TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr16:53686639_53686640CG>AT	uc002ehp.2	-	15	2023_2024	c.1959_1960CG>AT	c.(1957-1962)CCCGAA>CCATAA	p.E654*	RPGRIP1L_uc002eho.3_Nonsense_Mutation_p.E654*|RPGRIP1L_uc010vgy.1_Nonsense_Mutation_p.E654*|RPGRIP1L_uc010cbx.2_Nonsense_Mutation_p.E654*|RPGRIP1L_uc010vgz.1_Nonsense_Mutation_p.E654*	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	654	C2 1.				negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				AAGTTATATTCGGGATGAAGGC	0.386													6	226					0	0	6.4e-05	0	0
OVCA2	124641	broad.mit.edu	37	17	1946172	1946172	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr17:1946172C>T	uc002ftx.2	+	2	523	c.458C>T	c.(457-459)CCC>CTC	p.P153L	DPH1_uc002ftr.1_Intron|DPH1_uc002fts.2_3'UTR|DPH1_uc002ftt.2_3'UTR|DPH1_uc010cjx.2_3'UTR|DPH1_uc010vqs.1_3'UTR|DPH1_uc002ftu.2_3'UTR|DPH1_uc002ftv.2_3'UTR|DPH1_uc002ftw.2_3'UTR	NM_080822	NP_543012	Q8WZ82	OVCA2_HUMAN	candidate tumor suppressor in ovarian cancer 2	153					response to retinoic acid	cytoplasm	hydrolase activity				0						GGTTTCTGTCCCCGGGGCATT	0.587											OREG0024078	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	52					0	0	0.00010058	0	0
OR1G1	8390	broad.mit.edu	37	17	3030838	3030838	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr17:3030838C>T	uc002fvc.1	-	1	8	c.8G>A	c.(7-9)GGG>GAG	p.G3E		NM_003555	NP_003546	P47890	OR1G1_HUMAN	olfactory receptor, family 1, subfamily G,	3	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAGATTTTTCCCCTCCATTTG	0.463													11	8					0	0	3.86212e-05	0	0
PER1	5187	broad.mit.edu	37	17	8050864	8050864	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr17:8050864G>A	uc002gkd.2	-	12	1659	c.1421C>T	c.(1420-1422)CCG>CTG	p.P474L	PER1_uc010vuq.1_RNA|PER1_uc010vur.1_Missense_Mutation_p.P458L	NM_002616	NP_002607	O15534	PER1_HUMAN	period 1	474					circadian rhythm|entrainment of circadian clock|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			lung(2)|breast(2)|skin(2)|large_intestine(1)|ovary(1)|kidney(1)	9						GCTGGGGGCCGGGGGAGTGAA	0.647			T	ETV6	AML|CMML			Other_conserved_DNA_damage_response_genes					4	14					0	0	0.000602214	0	0
MYH8	4626	broad.mit.edu	37	17	10303910	10303910	+	Missense_Mutation	SNP	G	A	A	rs142073810	byFrequency	TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr17:10303910G>A	uc002gmm.2	-	27	3627	c.3532C>T	c.(3532-3534)CGC>TGC	p.R1178C	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1178	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						AGGTCCCTGCGCAGTTTCTGA	0.572									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				11	59					0	0	0.000219431	0	0
DNAH9	1770	broad.mit.edu	37	17	11835419	11835419	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr17:11835419G>A	uc002gne.2	+	64	12262	c.12194G>A	c.(12193-12195)CGA>CAA	p.R4065Q	DNAH9_uc010coo.2_Missense_Mutation_p.R3283Q|DNAH9_uc002gnf.2_Missense_Mutation_p.R377Q	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	4065	AAA 6 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GCAGAAAGACGAAAATTTGGG	0.498													25	56					0	0	0.000375601	0	0
DNAH9	1770	broad.mit.edu	37	17	11865375	11865375	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr17:11865375G>A	uc002gne.2	+	68	13103	c.13035G>A	c.(13033-13035)TGG>TGA	p.W4345*	DNAH9_uc010coo.2_Nonsense_Mutation_p.W3563*|DNAH9_uc002gnf.2_Nonsense_Mutation_p.W657*	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	4345					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCACTGTGTGGCTGACAGGCT	0.572													14	33					0	0	0.000151284	0	0
LRRC37B	114659	broad.mit.edu	37	17	30348853	30348853	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr17:30348853G>A	uc002hgu.2	+	1	699	c.688G>A	c.(688-690)GAC>AAC	p.D230N	LRRC37B_uc010wbx.1_Missense_Mutation_p.D148N|LRRC37B_uc010csu.2_Missense_Mutation_p.D230N	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	230	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				TTTGAGTATGGACACACTGTA	0.498													32	65					0	0	0.000491102	0	0
KRT32	3882	broad.mit.edu	37	17	39620561	39620561	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr17:39620561C>T	uc002hwr.2	-	4	904	c.843G>A	c.(841-843)AGG>AGA	p.R281R		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32	281	Coil 2.|Rod.				epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				CCTCCACGTCCCTGCGGTTGG	0.617													7	17					0	0	8.12818e-05	0	0
RUNDC1	146923	broad.mit.edu	37	17	41143305	41143305	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr17:41143305C>T	uc002ici.1	+	5	1426	c.1414C>T	c.(1414-1416)CCG>TCG	p.P472S	RUNDC1_uc010whi.1_Missense_Mutation_p.P242S	NM_173079	NP_775102	Q96C34	RUND1_HUMAN	RUN domain containing 1	472	RUN.										0		Breast(137;0.00499)		BRCA - Breast invasive adenocarcinoma(366;0.161)		GGCCATGCACCCGTGGGAGCT	0.577													16	32					0	0	0.000422831	0	0
CA10	56934	broad.mit.edu	37	17	50008490	50008490	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr17:50008490G>A	uc002itw.3	-	3	1125	c.139C>T	c.(139-141)CCT>TCT	p.P47S	CA10_uc002itv.3_Missense_Mutation_p.P53S|CA10_uc002itx.3_Missense_Mutation_p.P47S|CA10_uc002ity.3_Missense_Mutation_p.P47S|CA10_uc002itz.2_Missense_Mutation_p.P47S	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	47					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			CAGAAAGAAGGAACTAGAAAC	0.428													7	24					0	0	0.000157383	0	0
EPX	8288	broad.mit.edu	37	17	56274326	56274326	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr17:56274326G>A	uc002ivq.2	+	7	914	c.828G>A	c.(826-828)AAG>AAA	p.K276K		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	276					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						CCCGCATCAAGAACCAGCGTG	0.502													15	23					0	0	7.07596e-05	0	0
GDPD1	284161	broad.mit.edu	37	17	57322876	57322876	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr17:57322876G>C	uc002ixk.1	+	3	424	c.287G>C	c.(286-288)GGG>GCG	p.G96A	GDPD1_uc002ixj.2_Missense_Mutation_p.G96A	NM_182569	NP_872375	Q8N9F7	GDPD1_HUMAN	glycerophosphodiester phosphodiesterase domain	96	Cytoplasmic (Potential).|GDPD.				glycerol metabolic process|lipid metabolic process	cytoplasm|integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					AGAGCAACTGGGGTCAATGTA	0.343													3	42					0	0	0.00024832	0	0
MARCH10	162333	broad.mit.edu	37	17	60799913	60799913	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr17:60799913C>T	uc010ddr.2	-	8	2388	c.2150G>A	c.(2149-2151)GGC>GAC	p.G717D	MARCH10_uc002jag.3_Missense_Mutation_p.G717D|MARCH10_uc010dds.2_Missense_Mutation_p.G755D|MARCH10_uc002jah.2_Missense_Mutation_p.G716D|uc002jaj.1_Intron|uc002jak.2_Intron	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	717	RING-CH-type.						ligase activity|zinc ion binding				0						AACCAGCAGGCCTTGCTTACA	0.438													12	16					0	0	0.000308642	0	0
PLIN4	729359	broad.mit.edu	37	19	4510880	4510880	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:4510880G>A	uc002mar.1	-	3	3050	c.3050C>T	c.(3049-3051)TCC>TTC	p.S1017F	PLIN4_uc010dub.1_Missense_Mutation_p.S41F	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	1017						lipid particle|plasma membrane					0						GAGCCCAGCGGACACTGCGTC	0.642													19	25					0	0	9.7654e-05	0	0
DPP9	91039	broad.mit.edu	37	19	4697661	4697661	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:4697661G>A	uc002mba.2	-	11	1335	c.1077C>T	c.(1075-1077)ATC>ATT	p.I359I	DPP9_uc002mbb.2_Silent_p.I359I|DPP9_uc002mbc.2_Silent_p.I359I	NM_139159	NP_631898	Q86TI2	DPP9_HUMAN	dipeptidylpeptidase 9	330					proteolysis	cytosol|membrane	aminopeptidase activity|serine-type peptidase activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00884)		GGGTCGAGACGATCTGAAGGG	0.557													5	13					0	0	0.000602214	0	0
ACSBG2	81616	broad.mit.edu	37	19	6182918	6182918	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:6182918A>G	uc002mef.1	+	9	1290	c.1063A>G	c.(1063-1065)AAG>GAG	p.K355E	ACSBG2_uc002mee.1_Missense_Mutation_p.K168E|ACSBG2_uc002meg.1_Missense_Mutation_p.K355E|ACSBG2_uc002meh.1_Missense_Mutation_p.K355E|ACSBG2_uc002mei.1_Missense_Mutation_p.K305E|ACSBG2_uc010xiz.1_Missense_Mutation_p.K355E	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	355					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						CATTGGCTTCAAGGTCAACTC	0.498													16	34					0	0	0.000132079	0	0
C3	718	broad.mit.edu	37	19	6711074	6711074	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:6711074C>G	uc002mfm.2	-	12	1465	c.1403G>C	c.(1402-1404)GGG>GCG	p.G468A		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	468					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GAGGGTCTCCCCGGGTCTGAG	0.597													3	84					0	0	0.000602214	0	0
MUC16	94025	broad.mit.edu	37	19	9071877	9071878	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:9071877_9071878GG>AA	uc002mkp.2	-	3	15772_15773	c.15568_15569CC>TT	c.(15568-15570)CCT>TTT	p.P5190F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5192	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTCAGTCTAGGAGTCAAGAAA	0.485													42	86					0	0	6.4e-05	0	0
MUC16	94025	broad.mit.edu	37	19	9086131	9086131	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:9086131G>A	uc002mkp.2	-	1	5888	c.5684C>T	c.(5683-5685)TCC>TTC	p.S1895F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1895	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTAAGTCATGGAAGTGTGAGT	0.493													10	26					0	0	0.000442599	0	0
OR7D4	125958	broad.mit.edu	37	19	9325375	9325375	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:9325375G>A	uc002mla.1	-	1	139	c.139C>T	c.(139-141)CTG>TTG	p.L47L		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	47	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CTGACGGCCAGAATGATGAGC	0.557													13	33					0	0	0.000308642	0	0
CYP4F12	66002	broad.mit.edu	37	19	15807754	15807754	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:15807754G>A	uc002nbl.2	+	13	1495	c.1434G>A	c.(1432-1434)ATG>ATA	p.M478I		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					TGGCGGAGATGAAAGTGGTCC	0.637													9	21					0	0	0.000274275	0	0
FCHO1	23149	broad.mit.edu	37	19	17893860	17893860	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:17893860A>G	uc010ebb.2	+	23	2161	c.1972A>G	c.(1972-1974)ACC>GCC	p.T658A	FCHO1_uc002nhg.3_Missense_Mutation_p.T658A|FCHO1_uc002nhh.2_Missense_Mutation_p.T658A|FCHO1_uc010xpw.1_Missense_Mutation_p.T608A|FCHO1_uc002nhi.2_Missense_Mutation_p.T114A|FCHO1_uc002nhj.2_Missense_Mutation_p.T2A	NM_001161358	NP_001154830	O14526	FCHO1_HUMAN	FCH domain only 1 isoform b	658										breast(1)	1						GCTGACCATGACCTTCCCTGC	0.607													3	18					0	0	6.4e-05	0	0
ATP4A	495	broad.mit.edu	37	19	36047894	36047894	+	Missense_Mutation	SNP	G	A	A	rs138327542		TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:36047894G>A	uc002oal.1	-	12	1819	c.1790C>T	c.(1789-1791)GCG>GTG	p.A597V	ATP4A_uc010eee.1_Intron	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	597	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	TACAAGTCCCGCAAAGCAGAG	0.587													14	24					0	0	0.000308642	0	0
HIPK4	147746	broad.mit.edu	37	19	40890035	40890035	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:40890035G>A	uc002onp.2	-	2	762	c.477C>T	c.(475-477)TTC>TTT	p.F159F		NM_144685	NP_653286	Q8NE63	HIPK4_HUMAN	homeodomain interacting protein kinase 4	159	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2			Lung(22;4.95e-05)|LUSC - Lung squamous cell carcinoma(20;0.000292)			TGGCGGATCCGAAGTCAATCA	0.632													19	31					0	0	0.000175454	0	0
SPTBN4	57731	broad.mit.edu	37	19	41008687	41008687	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:41008687G>C	uc002ony.2	+	11	1295	c.1209G>C	c.(1207-1209)TGG>TGC	p.W403C	SPTBN4_uc002onx.2_Missense_Mutation_p.W403C|SPTBN4_uc002onz.2_Missense_Mutation_p.W403C	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	403	Spectrin 2.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TGCAGGCATGGGGTGAGCTGG	0.537													3	61					0	0	6.4e-05	0	0
PIH1D1	55011	broad.mit.edu	37	19	49950353	49950353	+	Silent	SNP	A	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:49950353A>G	uc002pns.2	-	7	899	c.615T>C	c.(613-615)CCT>CCC	p.P205P	uc002pnr.1_5'Flank	NM_017916	NP_060386	Q9NWS0	PIHD1_HUMAN	NOP17	205					box C/D snoRNP assembly	pre-snoRNP complex					0		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00152)|GBM - Glioblastoma multiforme(486;0.0244)		GAGGCTTTTCAGGCCTGAGGA	0.607													3	50					0	0	6.4e-05	0	0
ZNF808	388558	broad.mit.edu	37	19	53056926	53056926	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:53056926C>T	uc010epq.1	+	5	934	c.757C>T	c.(757-759)CAT>TAT	p.H253Y	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	253	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		CCAGATACCCCATTTAGGAGA	0.393													30	82					0	0	0.000132358	0	0
LILRA4	23547	broad.mit.edu	37	19	54849719	54849719	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:54849719C>T	uc002qfj.2	-	3	360	c.303G>A	c.(301-303)CAG>CAA	p.Q101Q	LILRA4_uc002qfi.2_Silent_p.Q35Q	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	101	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		CTGCAGGGCTCTGATAGTAAC	0.567													19	34					0	0	0.000132079	0	0
NLRP7	199713	broad.mit.edu	37	19	55450285	55450285	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:55450285C>T	uc002qih.3	-	4	1978	c.1902G>A	c.(1900-1902)ATG>ATA	p.M634I	NLRP7_uc002qig.3_Missense_Mutation_p.M634I|NLRP7_uc002qii.3_Missense_Mutation_p.M634I|NLRP7_uc010esk.2_Missense_Mutation_p.M634I|NLRP7_uc010esl.2_Missense_Mutation_p.M662I	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	634	LRR 1.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GTTCAAAATCCATGTAATTCT	0.473													16	35					0	0	0.000566183	0	0
APOB	338	broad.mit.edu	37	2	21239423	21239424	+	Nonsense_Mutation	DNP	CG	AT	AT	rs72653074		TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr2:21239423_21239424CG>AT	uc002red.2	-	21	3347_3348	c.3219_3220CG>AT	c.(3217-3222)CTCGGA>CTATGA	p.G1074*		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1074					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGGATTGTTCCGAGGTCAACAT	0.446													8	229					0	0	6.4e-05	0	0
THADA	63892	broad.mit.edu	37	2	43808935	43808936	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr2:43808935_43808936GG>TT	uc002rsw.3	-	8	1017_1018	c.665_666CC>AA	c.(664-666)CCC>CAA	p.P222Q	THADA_uc002rsx.3_Missense_Mutation_p.P222Q|THADA_uc002rsy.3_RNA|THADA_uc002rsz.2_5'UTR|THADA_uc002rta.2_5'UTR|THADA_uc002rtb.1_Missense_Mutation_p.P222Q|THADA_uc002rtc.3_Missense_Mutation_p.P222Q|THADA_uc002rtd.2_Missense_Mutation_p.P222Q	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	222							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				TTTGCCATATGGGAGAATCGGA	0.337													10	294					0	0	6.4e-05	0	0
EIF2AK3	9451	broad.mit.edu	37	2	88888342	88888343	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr2:88888342_88888343CC>AA	uc002stc.3	-	7	1444_1445	c.1242_1243GG>TT	c.(1240-1245)TTGGAA>TTTTAA	p.414_415LE>F*		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	414_415	Lumenal (Potential).				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						GTGACAGATTCCAAAGCCTTGG	0.361													10	397					0	0	6.4e-05	0	0
DPP10	57628	broad.mit.edu	37	2	116534832	116534832	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr2:116534832G>A	uc002tla.1	+	14	1727	c.1270G>A	c.(1270-1272)GAA>AAA	p.E424K	DPP10_uc002tlb.1_Missense_Mutation_p.E374K|DPP10_uc002tlc.1_Missense_Mutation_p.E420K|DPP10_uc002tle.2_Missense_Mutation_p.E428K|DPP10_uc002tlf.1_Missense_Mutation_p.E417K	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	424	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						AGGAAACTGGGAAGTGATAAA	0.378													4	23					0	0	3.59834e-05	0	0
FAM123C	205147	broad.mit.edu	37	2	131520228	131520228	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr2:131520228G>A	uc002trw.2	+	2	773	c.583G>A	c.(583-585)GGG>AGG	p.G195R	FAM123C_uc010fmv.2_Missense_Mutation_p.G195R|FAM123C_uc010fms.1_Missense_Mutation_p.G195R|FAM123C_uc010fmt.1_Missense_Mutation_p.G195R|FAM123C_uc010fmu.1_Missense_Mutation_p.G195R	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	195										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		AGACCCTGGGGGGCGGCGAAG	0.667													10	18					0	0	0.000442599	0	0
CXCR4	7852	broad.mit.edu	37	2	136873472	136873472	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr2:136873472G>A	uc002tuz.2	-	2	121	c.26C>T	c.(25-27)TCA>TTA	p.S9L	CXCR4_uc002tuy.2_Missense_Mutation_p.S13L|CXCR4_uc010fnk.2_5'UTR	NM_003467	NP_003458	P61073	CXCR4_HUMAN	chemokine (C-X-C motif) receptor 4 isoform b	9	Important for chemokine binding, signaling and HIV-1 coreceptor activity.|Extracellular.			Missing: Reduced CXCL12 binding. Impaired signaling. Reduced coreceptor activity for HIV-1 isolates LAI and NDK.|S->A: No effect on sulfate incorporation; when associated with A-8 and A-13.|Missing: Reduced CXCL12 binding. Abolishes signaling.	activation of MAPK activity|apoptosis|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|inflammatory response|initiation of viral infection|regulation of chemotaxis|response to hypoxia|response to virus	cell leading edge|cell surface|cytoplasmic membrane-bounded vesicle|integral to membrane|plasma membrane	actin binding|C-X-C chemokine receptor activity|coreceptor activity|myosin light chain binding|ubiquitin binding|ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.155)	Framycetin(DB00452)	GTAGTTATCTGAAGTGTATAT	0.378													12	38					0	0	0.00010058	0	0
HNMT	3176	broad.mit.edu	37	2	138771544	138771544	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr2:138771544G>A	uc002tvc.2	+	7	871	c.723G>A	c.(721-723)TGG>TGA	p.W241*	HNMT_uc002tvf.2_Nonsense_Mutation_p.W241*	NM_006895	NP_008826	P50135	HNMT_HUMAN	histamine N-methyltransferase isoform 1	241					respiratory gaseous exchange	cytoplasm	histamine N-methyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.125)	Amodiaquine(DB00613)|Histamine Phosphate(DB00667)|Quinacrine(DB01103)	ACCTGCTTTGGGATTTTTTGA	0.423													13	24					0	0	9.7654e-05	0	0
SCN2A	6326	broad.mit.edu	37	2	166172203	166172203	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr2:166172203G>A	uc002udc.2	+	11	1896	c.1606G>A	c.(1606-1608)GGT>AGT	p.G536S	SCN2A_uc002udd.2_Missense_Mutation_p.G536S|SCN2A_uc002ude.2_Missense_Mutation_p.G536S	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	536					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	AAGAAGAAAAGGTTTCCGTTT	0.264													23	58					0	0	0.000586117	0	0
TTN	7273	broad.mit.edu	37	2	179499341	179499341	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr2:179499341A>T	uc010zfg.1	-	179	34687	c.34463T>A	c.(34462-34464)TTT>TAT	p.F11488Y	TTN_uc010zfh.1_Missense_Mutation_p.F5183Y|TTN_uc010zfi.1_Missense_Mutation_p.F5116Y|TTN_uc010zfj.1_Missense_Mutation_p.F4991Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12415							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGGCACAGCAAAGTCAAGTTC	0.448													9	40					0	0	0.000274275	0	0
COL3A1	1281	broad.mit.edu	37	2	189858984	189858984	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr2:189858984C>T	uc002uqj.1	+	18	1336	c.1219C>T	c.(1219-1221)CCT>TCT	p.P407S	COL3A1_uc010frw.1_RNA	NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	407	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TCCTGGAGCTCCTGGACTGAT	0.483													16	44					0	0	0.000566183	0	0
MPP4	58538	broad.mit.edu	37	2	202519625	202519625	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr2:202519625C>T	uc002uyk.3	-	18	1524	c.1316G>A	c.(1315-1317)GGA>GAA	p.G439E	MPP4_uc002uyi.3_Missense_Mutation_p.G57E|MPP4_uc010ftj.2_Missense_Mutation_p.G432E|MPP4_uc010zhq.1_Missense_Mutation_p.G408E|MPP4_uc010zhr.1_Missense_Mutation_p.G415E|MPP4_uc010zhs.1_Missense_Mutation_p.G364E|MPP4_uc002uyj.3_Missense_Mutation_p.G404E|MPP4_uc010zht.1_Missense_Mutation_p.G381E|MPP4_uc002uyl.3_RNA|MPP4_uc010ftk.2_Missense_Mutation_p.G395E	NM_033066	NP_149055	Q96JB8	MPP4_HUMAN	membrane protein, palmitoylated 4	439	Guanylate kinase-like.					cytoplasm	protein binding				0						CTCATTTACTCCAACACCAGA	0.353													5	8					0	0	3.59834e-05	0	0
NBEAL1	65065	broad.mit.edu	37	2	204066299	204066300	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr2:204066299_204066300CG>AT	uc002uzt.3	+	49	7518_7519	c.7185_7186CG>AT	c.(7183-7188)CCCGGG>CCATGG	p.G2396W	NBEAL1_uc002uzs.3_Missense_Mutation_p.G1037W	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2396							binding			ovary(1)|skin(1)	2						CTTTTGCTCCCGGGCTAGAGAT	0.376													9	321					0	0	6.4e-05	0	0
CRYGB	1419	broad.mit.edu	37	2	209010708	209010708	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr2:209010708G>A	uc002vcp.3	-	2	75	c.42C>T	c.(40-42)GGC>GGT	p.G14G		NM_005210	NP_005201	P07316	CRGB_HUMAN	crystallin, gamma B	14	Beta/gamma crystallin 'Greek key' 1.				visual perception		structural constituent of eye lens				0				Epithelial(149;0.0641)|LUSC - Lung squamous cell carcinoma(261;0.0703)|Lung(261;0.132)		CGTAGCTGCGGCCCTGGAAGG	0.567													19	49					0	0	0.000229342	0	0
NEU2	4759	broad.mit.edu	37	2	233899575	233899575	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr2:233899575C>T	uc010zmn.1	+	2	951	c.951C>T	c.(949-951)GCC>GCT	p.A317A		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	317							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		GACCTCCAGCCCCTGAGGCCT	0.677													18	15					0	0	9.7654e-05	0	0
BPIL1	80341	broad.mit.edu	37	20	31608184	31608184	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr20:31608184G>A	uc002wyj.2	+	12	1325	c.1131G>A	c.(1129-1131)GGG>GGA	p.G377G		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	377						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						AGCTTCAGGGGACCACGTCTG	0.602													19	19					0	0	0.000132079	0	0
C20orf117	140710	broad.mit.edu	37	20	35444105	35444105	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr20:35444105G>A	uc002xgd.1	-	5	1353	c.1026C>T	c.(1024-1026)ATC>ATT	p.I342I	C20orf117_uc002xge.1_RNA	NM_199181	NP_954650	O94964	K0889_HUMAN	hypothetical protein LOC140710 isoform 2	342											0		Myeloproliferative disorder(115;0.00874)				TGAGCTCGCCGATCTGCAGCT	0.647													6	7					0	0	3.59834e-05	0	0
TGM2	7052	broad.mit.edu	37	20	36758746	36758746	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr20:36758746C>T	uc002xhr.2	-	13	2039	c.1939G>A	c.(1939-1941)GAA>AAA	p.E647K	TGM2_uc002xhq.2_Missense_Mutation_p.E248K|TGM2_uc010zvx.1_Missense_Mutation_p.E566K|TGM2_uc010zvy.1_Missense_Mutation_p.E587K	NM_004613	NP_004604	P21980	TGM2_HUMAN	transglutaminase 2 isoform a	647					apoptotic cell clearance|peptide cross-linking|positive regulation of cell adhesion		acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(1)|lung(1)|ovary(1)	3		Myeloproliferative disorder(115;0.00878)			L-Glutamine(DB00130)	ACCTTAACTTCCTCCCCTGCC	0.637													5	10					0	0	0.000602214	0	0
CHD6	84181	broad.mit.edu	37	20	40054738	40054739	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr20:40054738_40054739CG>AT	uc002xka.1	-	28	4301_4302	c.4123_4124CG>AT	c.(4123-4125)CGG>ATG	p.R1375M		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1375					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				CTCACCTGCCCGGCTGTCATCC	0.406													7	236					0	0	6.4e-05	0	0
PTPRT	11122	broad.mit.edu	37	20	40944528	40944528	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr20:40944528G>A	uc002xkg.2	-	12	2158	c.1974C>T	c.(1972-1974)CTC>CTT	p.L658L	PTPRT_uc010ggj.2_Silent_p.L658L	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	658	Extracellular (Potential).|Fibronectin type-III 4.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GTAGAGAATCGAGGCTGGAGG	0.517													16	52					0	0	7.07596e-05	0	0
ZSWIM1	90204	broad.mit.edu	37	20	44511763	44511763	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr20:44511763C>T	uc010ghi.2	+	2	645	c.532C>T	c.(532-534)CAG>TAG	p.Q178*	ZSWIM1_uc010zxh.1_Nonsense_Mutation_p.Q51*	NM_080603	NP_542170	Q9BR11	ZSWM1_HUMAN	zinc finger, SWIM-type containing 1	178							zinc ion binding			skin(1)	1		Myeloproliferative disorder(115;0.028)				TAAGTTCCTCCAGGCCAAGTT	0.552													33	32					0	0	0.00058488	0	0
CTSA	5476	broad.mit.edu	37	20	44520573	44520573	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr20:44520573G>A	uc002xqj.3	+	3	687	c.213G>A	c.(211-213)AAG>AAA	p.K71K	NEURL2_uc002xqg.1_5'Flank|CTSA_uc002xqh.2_Silent_p.K89K|CTSA_uc002xqi.2_RNA|CTSA_uc010zxi.1_Silent_p.K89K|CTSA_uc002xqk.3_Silent_p.K71K	NM_001127695	NP_001121167	P10619	PPGB_HUMAN	cathepsin A isoform b precursor	71					intracellular protein transport|proteolysis	endoplasmic reticulum|lysosome|nucleus	enzyme activator activity|protein binding|serine-type carboxypeptidase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				AGTCCCAGAAGGATCCCGAGA	0.652											OREG0025986	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	19					0	0	0.000229342	0	0
SPATA2	9825	broad.mit.edu	37	20	48522829	48522829	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr20:48522829G>A	uc010gie.2	-	3	1240	c.890C>T	c.(889-891)TCG>TTG	p.S297L	SPATA2_uc002xuw.2_Missense_Mutation_p.S297L|SPATA2_uc010zyn.1_Missense_Mutation_p.S160L	NM_001135773	NP_001129245	Q9UM82	SPAT2_HUMAN	spermatogenesis associated 2	297					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus				central_nervous_system(1)|skin(1)	2	Hepatocellular(150;0.133)		BRCA - Breast invasive adenocarcinoma(9;4.03e-06)			GGTCAGCAGCGAAGGGGATGG	0.662													8	92					0	0	0.000157383	0	0
C20orf106	200232	broad.mit.edu	37	20	55099991	55099991	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr20:55099991C>T	uc002xxx.2	+	1	207	c.127C>T	c.(127-129)CGG>TGG	p.R43W	GCNT7_uc010zzg.1_Intron|C20orf107_uc010zzh.1_Missense_Mutation_p.R43W	NM_001012971	NP_001012989	Q5JX71	CT106_HUMAN	hypothetical protein LOC200232 precursor	43	Extracellular (Potential).					integral to membrane					0			Colorectal(105;0.202)			AGAGCACTTTCGGATTCGGCA	0.512													20	72					0	0	0.000229342	0	0
CDH4	1002	broad.mit.edu	37	20	60348124	60348124	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr20:60348124G>A	uc002ybn.1	+	4	476	c.462G>A	c.(460-462)CCG>CCA	p.P154P	CDH4_uc002ybp.1_Silent_p.P80P	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	154					adherens junction organization|cell junction assembly		calcium ion binding	p.W155fs*46(1)		lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			CCCTGCTGCCGTGGCCCCAGC	0.647													17	17					0	0	0.000422831	0	0
C20orf200	253868	broad.mit.edu	37	20	61143472	61143472	+	Missense_Mutation	SNP	G	A	A	rs151182247		TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr20:61143472G>A	uc002ycz.1	-	3	867	c.376C>T	c.(376-378)CGT>TGT	p.R126C	C20orf200_uc002ycy.2_RNA	NM_152757	NP_689970			hypothetical protein LOC253868												0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;7.17e-06)			TTCTGCCCACGATAGAGACCC	0.647													6	42					0	0	3.86212e-05	0	0
Unknown	0	broad.mit.edu	37	21	9769119	9769119	+	RNA	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr21:9769119G>A	uc011abu.1	+	10		c.1094G>A								Homo sapiens, clone IMAGE:4720764, mRNA.																		GCTCAATTCCGATCTGTTGAA	0.373													4	11					0	0	0.00024832	0	0
DSCAM	1826	broad.mit.edu	37	21	41416118	41416118	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr21:41416118G>A	uc002yyq.1	-	31	5722	c.5270C>T	c.(5269-5271)CCC>CTC	p.P1757L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1757	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TGAGATGGTGGGGTGGGGTCG	0.607													6	12					0	0	0.000157383	0	0
CHEK2	11200	broad.mit.edu	37	22	29083937	29083937	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr22:29083937G>A	uc003adu.1	-	15	1652	c.1580C>T	c.(1579-1581)GCC>GTC	p.A527V	CHEK2_uc003ads.1_Missense_Mutation_p.A306V|CHEK2_uc010gvh.1_Missense_Mutation_p.A436V|CHEK2_uc010gvi.1_Missense_Mutation_p.A376V|CHEK2_uc010gvj.1_RNA|CHEK2_uc003adr.1_RNA|CHEK2_uc010gvk.1_RNA|CHEK2_uc003adt.1_Missense_Mutation_p.A570V|CHEK2_uc003adv.1_Missense_Mutation_p.A498V|CHEK2_uc003adw.1_Missense_Mutation_p.A527V|CHEK2_uc003adx.1_Missense_Mutation_p.A306V|CHEK2_uc003ady.1_Missense_Mutation_p.A516V|CHEK2_uc003adz.1_Missense_Mutation_p.A331V	NM_007194	NP_009125	O96017	CHK2_HUMAN	protein kinase CHK2 isoform a	527					cell cycle|DNA damage checkpoint|DNA damage response, signal transduction resulting in induction of apoptosis|replicative senescence	PML body	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(17)|stomach(1)|ovary(1)|lung(1)	20						GGCACCCTCGGCTTCCCCTTC	0.463			F			breast 		Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes	Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|CHEK2-associated_cancer				14	15					0	0	0.000422831	0	0
CARD10	29775	broad.mit.edu	37	22	37891864	37891864	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr22:37891864C>T	uc003asx.1	-	14	2209	c.2206G>A	c.(2206-2208)GAC>AAC	p.D736N	CARD10_uc003ast.1_RNA|CARD10_uc003asv.1_5'Flank|CARD10_uc011ank.1_Missense_Mutation_p.D54N|CARD10_uc003asw.1_Missense_Mutation_p.D450N|CARD10_uc003asy.1_Missense_Mutation_p.D736N	NM_014550	NP_055365	Q9BWT7	CAR10_HUMAN	caspase recruitment domain protein 10	736					activation of NF-kappaB-inducing kinase activity|protein complex assembly|regulation of apoptosis	CBM complex	receptor signaling complex scaffold activity			upper_aerodigestive_tract(1)|lung(1)|breast(1)|ovary(1)|prostate(1)|kidney(1)	6	Melanoma(58;0.0574)					TATGCCGAGTCCACCAGTCGA	0.607													17	16					0	0	0.000566183	0	0
SLC25A17	10478	broad.mit.edu	37	22	41166969	41166970	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr22:41166969_41166970CC>AA	uc003azc.2	-	9	932_933	c.792_793GG>TT	c.(790-795)ATGGGA>ATTTGA	p.264_265MG>I*	SLC25A17_uc010gyg.2_RNA|SLC25A17_uc011aou.1_Nonsense_Mutation_p.227_228MG>I*|SLC25A17_uc003azd.2_RNA|SLC25A17_uc011aov.1_Nonsense_Mutation_p.191_192MG>I*	NM_006358	NP_006349	O43808	PM34_HUMAN	solute carrier family 25 (mitochondrial carrier;	264_265	Solcar 3.|Lumenal (Potential).				fatty acid alpha-oxidation	integral to plasma membrane|mitochondrial inner membrane|peroxisomal membrane	adenine nucleotide transmembrane transporter activity|protein binding				0						TTGTAGAGTCCCATTATTCCAA	0.436													11	425					0	0	6.4e-05	0	0
PNPLA3	80339	broad.mit.edu	37	22	44342112	44342112	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr22:44342112C>T	uc003bei.1	+	9	1469	c.1296C>T	c.(1294-1296)TCC>TCT	p.S432S	PNPLA3_uc010gzm.1_Intron	NM_025225	NP_079501	Q9NST1	PLPL3_HUMAN	patatin-like phospholipase domain containing 3	432	Lumenal (Potential).				triglyceride biosynthetic process|triglyceride catabolic process	integral to membrane	diolein transacylation activity|mono-olein transacylation activity|phospholipase A2 activity|triglyceride lipase activity				0		Ovarian(80;0.024)|all_neural(38;0.0416)				CTCCCTGCTCCCCCAAGGGCT	0.597											OREG0026623	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	99					0	0	0.000147802	0	0
GTSE1	51512	broad.mit.edu	37	22	46712273	46712274	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr22:46712273_46712274CC>AA	uc011aqy.1	+	7	1608_1609	c.1396_1397CC>AA	c.(1396-1398)CCT>AAT	p.P466N	GTSE1_uc011aqz.1_Missense_Mutation_p.P313N|GTSE1_uc003bhl.1_Missense_Mutation_p.P91N|GTSE1_uc003bhm.1_Missense_Mutation_p.P91N	NM_016426	NP_057510	Q9NYZ3	GTSE1_HUMAN	G-2 and S-phase expressed 1	447					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G2 phase of mitotic cell cycle|microtubule-based process	cytoplasmic microtubule				ovary(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00462)		TATGCCTACTCCTACAAATCAA	0.322													10	300					0	0	6.4e-05	0	0
MAPK8IP2	23542	broad.mit.edu	37	22	51043341	51043341	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr22:51043341G>C	uc003bmx.2	+	6	1731	c.1614G>C	c.(1612-1614)GAG>GAC	p.E538D	MAPK8IP2_uc003bmy.2_Missense_Mutation_p.E511D|MAPK8IP2_uc011asc.1_5'Flank	NM_012324	NP_036456	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting	538					behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding			large_intestine(2)|central_nervous_system(1)	3		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		ACAGCGAAGAGGACAGCGGCG	0.701													13	20					0	0	7.07596e-05	0	0
MAPK8IP2	23542	broad.mit.edu	37	22	51044096	51044096	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr22:51044096G>A	uc003bmx.2	+	8	2065	c.1948G>A	c.(1948-1950)GGG>AGG	p.G650R	MAPK8IP2_uc003bmy.2_Missense_Mutation_p.G623R|MAPK8IP2_uc011asc.1_Missense_Mutation_p.G4R	NM_012324	NP_036456	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting	650	SH3.				behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding			large_intestine(2)|central_nervous_system(1)	3		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CATGCGCACGGGGGAGCGCGG	0.657													5	30					0	0	0.000602214	0	0
LRRN1	57633	broad.mit.edu	37	3	3887120	3887120	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr3:3887120G>A	uc003bpt.3	+	2	1556	c.795G>A	c.(793-795)TTG>TTA	p.L265L	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	265	LRR 9.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		TTCCAAATTTGAAATTCTTAG	0.398													14	49					0	0	0.000151284	0	0
SLC6A6	6533	broad.mit.edu	37	3	14508101	14508101	+	Silent	SNP	G	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr3:14508101G>C	uc010heg.2	+	14	1101	c.810G>C	c.(808-810)GCG>GCC	p.A270A	SLC6A6_uc003byq.2_Silent_p.A270A|SLC6A6_uc003byr.2_RNA	NM_001134367	NP_001127839	P31641	SC6A6_HUMAN	solute carrier family 6 (neurotransmitter	270					cellular amino acid metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity|taurine:sodium symporter activity			ovary(1)	1						TGCCGGGCGCGGGCGCAGGCA	0.617													3	36					0	0	0.00024832	0	0
GALNTL2	117248	broad.mit.edu	37	3	16216760	16216760	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr3:16216760C>T	uc003car.3	+	1	577	c.102C>T	c.(100-102)CAC>CAT	p.H34H	GALNTL2_uc003caq.3_Intron	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	34	Helical; Signal-anchor for type II membrane protein; (Potential).					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						CGATGTTGCACCCTCCCCACC	0.597													15	24					0	0	0.000422831	0	0
SCN5A	6331	broad.mit.edu	37	3	38616931	38616931	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr3:38616931G>A	uc003cio.2	-	20	3717	c.3523C>T	c.(3523-3525)CGC>TGC	p.R1175C	SCN5A_uc003cin.2_Missense_Mutation_p.R1174C|SCN5A_uc003cil.3_Missense_Mutation_p.R1175C|SCN5A_uc010hhi.2_Missense_Mutation_p.R1175C|SCN5A_uc010hhk.2_Missense_Mutation_p.R1174C|SCN5A_uc011ayr.1_Missense_Mutation_p.R1121C|SCN5A_uc010hhj.1_Missense_Mutation_p.R785C	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1175					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CAGGGACAGCGCCGGACACAG	0.602													4	3					0	0	0.000602214	0	0
COL7A1	1294	broad.mit.edu	37	3	48614170	48614170	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr3:48614170G>A	uc003ctz.2	-	67	5640	c.5639C>T	c.(5638-5640)CCT>CTT	p.P1880L		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1880	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AAGGATACCAGGAGCTCCACG	0.612													4	5					0	0	0.00024832	0	0
DOCK3	1795	broad.mit.edu	37	3	51308301	51308301	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr3:51308301C>T	uc011bds.1	+	24	2434	c.2411C>T	c.(2410-2412)ACC>ATC	p.T804I		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	804						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CAAATGTTCACCGTGCAAGAG	0.517													13	15					0	0	0.00010058	0	0
PDZRN3	23024	broad.mit.edu	37	3	73432850	73432850	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr3:73432850C>T	uc003dpl.1	-	10	2963	c.2867G>A	c.(2866-2868)GGC>GAC	p.G956D	PDZRN3_uc011bgh.1_Missense_Mutation_p.G613D|PDZRN3_uc010hoe.1_Missense_Mutation_p.G654D|PDZRN3_uc011bgf.1_Missense_Mutation_p.G673D|PDZRN3_uc011bgg.1_Missense_Mutation_p.G676D	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	956							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		GGTGGTCATGCCGCTGCGCTC	0.667													4	38					0	0	0.000602214	0	0
SLC15A2	6565	broad.mit.edu	37	3	121616254	121616254	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr3:121616254C>T	uc003eep.2	+	3	366	c.213C>T	c.(211-213)TTC>TTT	p.F71F	SLC15A2_uc011bjn.1_Silent_p.F71F	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	71	Helical; (Potential).				protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TCCTGTATTTCCTGTATTTCC	0.418													21	66					0	0	0.000375601	0	0
ATP2C1	27032	broad.mit.edu	37	3	130716571	130716571	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr3:130716571G>T	uc003enl.2	+	25	2587	c.2365G>T	c.(2365-2367)GGG>TGG	p.G789W	ATP2C1_uc011blg.1_Missense_Mutation_p.G823W|ATP2C1_uc011blh.1_Missense_Mutation_p.G784W|ATP2C1_uc011bli.1_Missense_Mutation_p.G823W|ATP2C1_uc003enk.2_Missense_Mutation_p.G773W|ATP2C1_uc003enm.2_Missense_Mutation_p.G789W|ATP2C1_uc003enn.2_Missense_Mutation_p.G773W|ATP2C1_uc003eno.2_Missense_Mutation_p.G789W|ATP2C1_uc003enp.2_Missense_Mutation_p.G789W|ATP2C1_uc003enq.2_Missense_Mutation_p.G789W|ATP2C1_uc003enr.2_Missense_Mutation_p.G789W|ATP2C1_uc003ens.2_Missense_Mutation_p.G789W|ATP2C1_uc003ent.2_Missense_Mutation_p.G789W|ATP2C1_uc003enu.2_Missense_Mutation_p.G467W	NM_014382	NP_055197	P98194	AT2C1_HUMAN	calcium-transporting ATPase 2C1 isoform 1a	789	Helical; Name=7; (By similarity).		G -> R (in HDD; unstable protein).		actin cytoskeleton reorganization|ATP biosynthetic process|calcium-dependent cell-cell adhesion|cellular calcium ion homeostasis|cellular manganese ion homeostasis|epidermis development|Golgi calcium ion homeostasis|Golgi calcium ion transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi apparatus|Golgi membrane|integral to membrane|trans-Golgi network	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|manganese ion binding|manganese-transporting ATPase activity|metal ion binding|signal transducer activity			skin(1)	1					Arsenic trioxide(DB01169)|Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Miconazole(DB01110)|Sevoflurane(DB01236)	CATTGTTTGTGGGACTTTGTT	0.343									Hailey-Hailey_disease				14	71					9.16793e-09	1.43392e-07	0.000566183	1	0
PCCB	5096	broad.mit.edu	37	3	136002690	136002691	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr3:136002690_136002691GG>AA	uc003eqy.1	+	6	606_607	c.555_556GG>AA	c.(553-558)ACGGCA>ACAACA	p.A186T	PCCB_uc003eqz.1_Missense_Mutation_p.A186T|PCCB_uc011bmc.1_Missense_Mutation_p.A206T|PCCB_uc011bmd.1_Missense_Mutation_p.A103T	NM_000532	NP_000523	P05166	PCCB_HUMAN	propionyl Coenzyme A carboxylase, beta	186	Carboxyltransferase.				fatty acid beta-oxidation	mitochondrial matrix	ATP binding|propionyl-CoA carboxylase activity				0					Biotin(DB00121)|L-Valine(DB00161)	GGAATGTTACGGCATCCGGAGT	0.455													8	29					0	0	6.4e-05	0	0
CEP70	80321	broad.mit.edu	37	3	138289314	138289315	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr3:138289314_138289315CG>AT	uc003esl.2	-	6	508_509	c.310_311CG>AT	c.(310-312)CGA>ATA	p.R104I	CEP70_uc011bmk.1_Missense_Mutation_p.R84I|CEP70_uc011bml.1_Missense_Mutation_p.R86I|CEP70_uc011bmm.1_Intron|CEP70_uc003esm.2_Missense_Mutation_p.R104I|CEP70_uc003esn.2_Missense_Mutation_p.R104I	NM_024491	NP_077817	Q8NHQ1	CEP70_HUMAN	centrosomal protein 70 kDa	104	Potential.				G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding			skin(1)	1						ATTGGCTGCTCGGCTTTGCTCT	0.347													8	382					0	0	6.4e-05	0	0
PLSCR2	57047	broad.mit.edu	37	3	146167065	146167065	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr3:146167065G>A	uc003evv.1	-	7	906	c.573C>T	c.(571-573)AAC>AAT	p.N191N	PLSCR2_uc003evw.1_Silent_p.N260N	NM_020359	NP_065092	Q9NRY7	PLS2_HUMAN	phospholipid scramblase 2	191	Cytoplasmic (By similarity).				phospholipid scrambling	integral to membrane|plasma membrane	calcium ion binding|phospholipid scramblase activity				0						GGATTCCAAAGTTGTCAGCAT	0.393													43	40					0	0	0.000509022	0	0
SMC4	10051	broad.mit.edu	37	3	160122245	160122245	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr3:160122245C>T	uc003fdh.2	+	5	753	c.640C>T	c.(640-642)CGA>TGA	p.R214*	IFT80_uc003fda.2_Intron|SMC4_uc003fdf.1_RNA|SMC4_uc003fdg.1_Nonsense_Mutation_p.R214*|SMC4_uc010hwc.1_Intron|SMC4_uc003fdi.2_Nonsense_Mutation_p.R189*|SMC4_uc003fdj.2_Nonsense_Mutation_p.R214*|SMC4_uc010hwd.2_Nonsense_Mutation_p.R214*|uc011boz.1_5'Flank|MIR15B_hsa-mir-15b|MI0000438_5'Flank|uc003fdk.2_5'Flank|MIR16-2_hsa-mir-16-2|MI0000115_5'Flank	NM_001002800	NP_001002800	Q9NTJ3	SMC4_HUMAN	SMC4 structural maintenance of chromosomes	214					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|nucleus	ATP binding|protein heterodimerization activity			ovary(1)|breast(1)	2			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			AAATCTTCTTCGAAGCCATGG	0.313													7	40					0	0	8.12818e-05	0	0
SI	6476	broad.mit.edu	37	3	164793789	164793789	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr3:164793789C>T	uc003fei.2	-	2	74	c.12G>A	c.(10-12)AAG>AAA	p.K4K		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	4	Cytoplasmic.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CACTAAATTTCTTTCTTGCCA	0.259										HNSCC(35;0.089)			12	13					0	0	6.40141e-05	0	0
SLITRK3	22865	broad.mit.edu	37	3	164905886	164905886	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr3:164905886C>T	uc003fej.3	-	2	3177	c.2733G>A	c.(2731-2733)AAG>AAA	p.K911K	SLITRK3_uc003fek.2_Silent_p.K911K	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	911	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						CGTGCAGTTCCTTTAATTTGG	0.537										HNSCC(40;0.11)			19	24					0	0	7.07596e-05	0	0
SDHAP2	727956	broad.mit.edu	37	3	195400728	195400728	+	Silent	SNP	A	G	G	rs12107841	by1000genomes	TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr3:195400728A>G	uc003fuw.2	+	9	1218	c.24A>G	c.(22-24)CCA>CCG	p.P8P	SDHAP2_uc011btb.1_Missense_Mutation_p.S156G|SDHAP2_uc011btc.1_RNA|SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						GATTGTGCCCAGCCTGTACGC	0.587													3	8					0	0	6.4e-05	0	0
ACOX3	8310	broad.mit.edu	37	4	8417561	8417561	+	Missense_Mutation	SNP	G	A	A	rs148322745		TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr4:8417561G>A	uc010idk.2	-	3	455	c.310C>T	c.(310-312)CCC>TCC	p.P104S	ACOX3_uc003glc.3_Missense_Mutation_p.P104S|ACOX3_uc003gld.3_Missense_Mutation_p.P104S|ACOX3_uc003gle.1_Missense_Mutation_p.P9S	NM_003501	NP_003492	O15254	ACOX3_HUMAN	acyl-Coenzyme A oxidase 3 isoform a	104					bile acid metabolic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|pristanoyl-CoA oxidase activity			central_nervous_system(1)	1						ATCAAGGCGGGGACCTTCAGA	0.542													21	38					0	0	0.000295444	0	0
CEP135	9662	broad.mit.edu	37	4	56823443	56823443	+	Missense_Mutation	SNP	C	T	T	rs149954755		TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr4:56823443C>T	uc003hbi.2	+	5	761	c.527C>T	c.(526-528)CCG>CTG	p.P176L	CEP135_uc003hbh.1_Missense_Mutation_p.P176L|CEP135_uc010igz.1_Missense_Mutation_p.P6L	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4	176					centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					ATTGATGAACCGGTTCCTCCC	0.408													10	55					0	0	6.40141e-05	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69093675	69093675	+	Missense_Mutation	SNP	C	T	T	rs140417405		TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr4:69093675C>T	uc003hdw.3	-	10	1341	c.1205G>A	c.(1204-1206)CGA>CAA	p.R402Q		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	402	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						AGAAGTCACTCGAGTATAGAC	0.398													5	25					0	0	3.59834e-05	0	0
HELQ	113510	broad.mit.edu	37	4	84353404	84353404	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr4:84353404G>A	uc003hom.2	-	10	2244	c.2065C>T	c.(2065-2067)CCC>TCC	p.P689S	HELQ_uc010ikb.2_Missense_Mutation_p.P622S|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	689	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						GCAACATAGGGAGCTCTTAAA	0.299								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					27	31					0	0	0.000339439	0	0
ADH5	128	broad.mit.edu	37	4	99993838	99993839	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr4:99993838_99993839GG>TT	uc003hui.2	-	8	1065_1066	c.985_986CC>AA	c.(985-987)CCA>AAA	p.P329K	ADH5_uc003huj.2_Missense_Mutation_p.P207K	NM_000671	NP_000662	P11766	ADHX_HUMAN	class III alcohol dehydrogenase, chi subunit	329					ethanol oxidation|response to redox state		alcohol dehydrogenase (NAD) activity|electron carrier activity|fatty acid binding|formaldehyde dehydrogenase activity|S-(hydroxymethyl)glutathione dehydrogenase activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;2.5e-07)	NADH(DB00157)	CACCAACTTTGGGACACTTTCT	0.337													8	259					0	0	6.4e-05	0	0
ADH1A	124	broad.mit.edu	37	4	100201389	100201389	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr4:100201389G>A	uc003hur.1	-	7	947	c.876C>T	c.(874-876)ATC>ATT	p.I292I	uc003hum.1_Intron|ADH1A_uc011ceg.1_Silent_p.I292I	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	292					ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	GTACCCCTACGATGACACTTG	0.458													20	26					0	0	0.000175454	0	0
ADH1B	125	broad.mit.edu	37	4	100235037	100235037	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr4:100235037C>T	uc003hus.3	-	6	853	c.769G>A	c.(769-771)GAA>AAA	p.E257K	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.E217K|ADH1B_uc011ceh.1_Missense_Mutation_p.E102K|ADH1B_uc011cei.1_Missense_Mutation_p.E217K	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	257					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	TCAGTCATTTCCTTTAGCACT	0.463													28	93					0	0	0.000227799	0	0
FAT4	79633	broad.mit.edu	37	4	126411473	126411473	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr4:126411473C>T	uc003ifj.3	+	17	13496	c.13496C>T	c.(13495-13497)TCT>TTT	p.S4499F	FAT4_uc011cgp.1_Missense_Mutation_p.S2740F|FAT4_uc003ifi.1_Missense_Mutation_p.S1976F	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4499	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GAAGAGATCTCTCTGCCTTTG	0.607													8	41					0	0	0.000274275	0	0
LARP1B	55132	broad.mit.edu	37	4	129028373	129028373	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr4:129028373C>G	uc003iga.2	+	9	1024	c.893C>G	c.(892-894)CCA>CGA	p.P298R	LARP1B_uc003ifx.2_Missense_Mutation_p.P298R|LARP1B_uc003ify.2_Missense_Mutation_p.P298R|LARP1B_uc003ifz.1_Missense_Mutation_p.P298R|LARP1B_uc003igb.1_Missense_Mutation_p.P13R	NM_018078	NP_060548	Q659C4	LAR1B_HUMAN	La ribonucleoprotein domain family member 2	298	HTH La-type RNA-binding.						RNA binding				0						TGGCCAATTCCAGGCCCTCCT	0.433													3	34					0	0	6.4e-05	0	0
CEP72	55722	broad.mit.edu	37	5	637700	637700	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:637700C>T	uc003jbf.2	+	7	1045	c.973C>T	c.(973-975)CCC>TCC	p.P325S	CEP72_uc011clz.1_RNA	NM_018140	NP_060610	Q9P209	CEP72_HUMAN	centrosomal protein 72 kDa	325					G2/M transition of mitotic cell cycle|gamma-tubulin complex localization|spindle organization	centrosome|cytosol				ovary(1)	1			Epithelial(17;0.000339)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|Lung(60;0.0863)			GGTGCCTGGTCCCCTGCCAGC	0.562													10	9					0	0	3.86212e-05	0	0
TERT	7015	broad.mit.edu	37	5	1278880	1278880	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:1278880G>C	uc003jcb.1	-	6	2220	c.2162C>G	c.(2161-2163)CCC>CGC	p.P721R	TERT_uc003jbz.1_5'UTR|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Missense_Mutation_p.P721R|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	721	Reverse transcriptase.		P -> R (in a family with autosomal recessive DKC; no effect on telomerase catalytic activity and little effect on binding to TERC).		anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CCTGTCCTGGGGGATGGTGTC	0.622									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				5	67					0	0	0.000602214	0	0
IRX2	153572	broad.mit.edu	37	5	2748559	2748559	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:2748559C>T	uc003jda.2	-	3	1505	c.1263G>A	c.(1261-1263)CTG>CTA	p.L421L	IRX2_uc003jdb.2_Silent_p.L421L	NM_001134222	NP_001127694	Q9BZI1	IRX2_HUMAN	iroquois homeobox 2	421						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1				GBM - Glioblastoma multiforme(108;0.204)		GCGCGGTGTGCAGGGCCTCGC	0.711													17	26					0	0	7.07596e-05	0	0
C5orf49	134121	broad.mit.edu	37	5	7832061	7832061	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:7832061C>T	uc003jea.3	-	3	476	c.346G>A	c.(346-348)GAC>AAC	p.D116N		NM_001089584	NP_001083053	A4QMS7	CE049_HUMAN	hypothetical protein LOC134121	116											0						CGGCCAAAGTCCCGGTTTAGG	0.547													9	26					0	0	0.000442599	0	0
MARCH6	10299	broad.mit.edu	37	5	10382033	10382034	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:10382033_10382034GG>TT	uc003jet.1	+	4	495_496	c.312_313GG>TT	c.(310-315)TTGGGA>TTTTGA	p.104_105LG>F*	MARCH6_uc011cmu.1_Intron|MARCH6_uc003jeu.1_5'UTR|MARCH6_uc011cmv.1_Intron	NM_005885	NP_005876	O60337	MARH6_HUMAN	membrane-associated ring finger (C3HC4) 6	104_105	Helical; (Potential).				protein K48-linked ubiquitination	integral to endoplasmic reticulum membrane	ubiquitin conjugating enzyme binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|breast(1)	2						TTGCATGGTTGGGAGTTGTTCC	0.366													11	383					0	0	6.4e-05	0	0
CTNND2	1501	broad.mit.edu	37	5	11110978	11110979	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:11110978_11110979GG>TT	uc003jfa.1	-	14	2599_2600	c.2454_2455CC>AA	c.(2452-2457)TCCCAA>TCAAAA	p.Q819K	CTNND2_uc010itt.2_Missense_Mutation_p.Q728K|CTNND2_uc011cmy.1_Missense_Mutation_p.Q482K|CTNND2_uc011cmz.1_Missense_Mutation_p.Q386K|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.Q386K	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	819					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						ACCTGATCTTGGGATTTCTTTT	0.5													19	574					0	0	6.4e-05	0	0
DNAH5	1767	broad.mit.edu	37	5	13708438	13708438	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:13708438C>T	uc003jfd.2	-	76	13174	c.13132G>A	c.(13132-13134)GAG>AAG	p.E4378K	DNAH5_uc003jfc.2_Missense_Mutation_p.E546K	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4378					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGCAGCCTCTCTTTTACCTGC	0.483									Kartagener_syndrome				17	85					0	0	0.000175454	0	0
MTMR12	54545	broad.mit.edu	37	5	32230401	32230401	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:32230401C>T	uc003jhq.2	-	16	1897	c.1727G>A	c.(1726-1728)AGA>AAA	p.R576K	MTMR12_uc010iuk.2_Missense_Mutation_p.R522K|MTMR12_uc010iul.2_Missense_Mutation_p.R466K	NM_001040446	NP_001035536	Q9C0I1	MTMRC_HUMAN	myotubularin related protein 12	576	Myotubularin phosphatase.					cytoplasm	phosphatase activity			ovary(1)	1						GAAAAATCCTCTTTTGGGAGA	0.348													70	67					0	0	0.000147903	0	0
MTMR12	54545	broad.mit.edu	37	5	32235160	32235160	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:32235160C>T	uc003jhq.2	-	14	1590	c.1420G>A	c.(1420-1422)GAG>AAG	p.E474K	MTMR12_uc010iuk.2_Missense_Mutation_p.E474K|MTMR12_uc010iul.2_Intron	NM_001040446	NP_001035536	Q9C0I1	MTMRC_HUMAN	myotubularin related protein 12	474	Myotubularin phosphatase.|Interaction with MTM1.					cytoplasm	phosphatase activity			ovary(1)	1						AGGTAAGTCTCTGTGAATTCA	0.418													47	30					0	0	0.000147903	0	0
SPEF2	79925	broad.mit.edu	37	5	35806995	35806995	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:35806995G>A	uc003jjo.2	+	35	5308	c.5197G>A	c.(5197-5199)GAA>AAA	p.E1733K	SPEF2_uc003jjp.1_Missense_Mutation_p.E1219K|SPEF2_uc003jjr.2_Missense_Mutation_p.E788K	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1733					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGGGGGAAGTGAAGCACAGGA	0.393													9	19					0	0	3.86212e-05	0	0
LIFR	3977	broad.mit.edu	37	5	38485927	38485927	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:38485927C>T	uc010ive.1	-	17	2823	c.2491G>A	c.(2491-2493)GAA>AAA	p.E831K	LIFR_uc003jli.2_Missense_Mutation_p.E831K	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	831	Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					TTACAATTTTCCTTTGTCACC	0.468			T	PLAG1	salivary adenoma								5	33					0	0	3.59834e-05	0	0
SKIV2L2	23517	broad.mit.edu	37	5	54696147	54696147	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:54696147C>T	uc003jpy.3	+	21	2645	c.2379C>T	c.(2377-2379)GTC>GTT	p.V793V	SKIV2L2_uc011cqi.1_Silent_p.V692V	NM_015360	NP_056175	P42285	SK2L2_HUMAN	superkiller viralicidic activity 2-like 2	793					maturation of 5.8S rRNA	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(1)|skin(1)	2		Lung NSC(810;0.000744)|Breast(144;0.181)|Prostate(74;0.194)				TGAAAAAAGTCATTCAGAAAG	0.373													8	25					0	0	0.000274275	0	0
HMGCR	3156	broad.mit.edu	37	5	74645866	74645867	+	Splice_Site	DNP	GG	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:74645866_74645867GG>TT	uc003kdp.2	+	7	713	c.557_splice	c.e7-1	p.G186_splice	HMGCR_uc011cst.1_Splice_Site_p.G206_splice|HMGCR_uc003kdq.2_Splice_Site_p.G186_splice|HMGCR_uc010izn.1_Splice_Site_p.G26_splice	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase						cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	TCTCTAACCAGGGGTACGTCAG	0.391													12	248					0	0	6.4e-05	0	0
CRHBP	1393	broad.mit.edu	37	5	76264654	76264654	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:76264654G>A	uc003ker.2	+	7	1193	c.913G>A	c.(913-915)GAG>AAG	p.E305K		NM_001882	NP_001873	P24387	CRHBP_HUMAN	corticotropin releasing hormone binding protein	305					female pregnancy|learning or memory|signal transduction	soluble fraction					0		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-51)|Epithelial(54;8.79e-46)|all cancers(79;2.49e-41)		GGAGCCGTACGAGCTGGAAAA	0.453													12	50					0	0	0.00010058	0	0
CMYA5	202333	broad.mit.edu	37	5	79025256	79025256	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:79025256G>A	uc003kgc.2	+	2	740	c.668G>A	c.(667-669)GGA>GAA	p.G223E		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	223						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GTCTACATAGGAACAGTACAA	0.318													15	34					0	0	0.000132079	0	0
CMYA5	202333	broad.mit.edu	37	5	79026242	79026242	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:79026242T>C	uc003kgc.2	+	2	1726	c.1654T>C	c.(1654-1656)TCC>CCC	p.S552P		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	552	Glu-rich.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		ACCACATATGTCCCCTGAAGT	0.433													3	75					0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	5	79655023	79655023	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:79655023C>T	uc003kgo.2	-	1	885	c.722G>A	c.(721-723)GGA>GAA	p.G241E						SubName: Full=Putative uncharacterized protein; Flags: Fragment;																		TCCAAAATTTCCTCCCTTCAT	0.373													31	39					0	0	0.00058488	0	0
PCDHA8	56140	broad.mit.edu	37	5	140221057	140221057	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:140221057G>A	uc003lhs.2	+	1	151	c.151G>A	c.(151-153)GAC>AAC	p.D51N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.D51N	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	51	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GATCGCGCAGGACCTGGGGCT	0.657													6	48					0	0	0.000274275	0	0
SLC25A2	83884	broad.mit.edu	37	5	140682809	140682809	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:140682809G>A	uc003ljf.2	-	1	804	c.624C>T	c.(622-624)GGC>GGT	p.G208G		NM_031947	NP_114153	Q9BXI2	ORNT2_HUMAN	solute carrier family 25 member 2	208	Solcar 3.				mitochondrial ornithine transport|urea cycle	integral to membrane|mitochondrial inner membrane	L-ornithine transmembrane transporter activity			ovary(1)	1		all_lung(500;0.000249)|Lung NSC(810;0.0011)|Ovarian(839;0.00556)|Breast(839;0.0173)|all_hematologic(541;0.152)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.00204)	L-Ornithine(DB00129)	AATGGACAGGGCCTAGTTCAT	0.428													21	34					0	0	0.000295444	0	0
LARP1	23367	broad.mit.edu	37	5	154181827	154181828	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr5:154181827_154181828GG>AC	uc003lvp.2	+	11	2406_2407	c.1977_1978GG>AC	c.(1975-1980)GGGGAC>GGACAC	p.D660H	LARP1_uc003lvo.2_Missense_Mutation_p.D583H|LARP1_uc010jie.1_Missense_Mutation_p.D455H	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	660							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			ACCCAGGGGGGGACCGCACAGG	0.55													13	20					0	0	6.4e-05	0	0
NOTCH4	4855	broad.mit.edu	37	6	32170129	32170129	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr6:32170129G>A	uc003obb.2	-	21	3618	c.3479C>T	c.(3478-3480)TCC>TTC	p.S1160F	NOTCH4_uc003oba.2_5'UTR|NOTCH4_uc011dpu.1_Intron|NOTCH4_uc011dpv.1_Intron	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1160	Extracellular (Potential).|EGF-like 29.				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GTGAGGGCAGGAGCATCGAAA	0.652													30	32					0	0	0.000279167	0	0
LRFN2	57497	broad.mit.edu	37	6	40360531	40360531	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr6:40360531G>A	uc003oph.1	-	3	1986	c.1521C>T	c.(1519-1521)ATC>ATT	p.I507I		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	507	Fibronectin type-III.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					CGCAGCCCACGATGTTGGTGG	0.607													9	7					0	0	0.000274275	0	0
CRISP2	7180	broad.mit.edu	37	6	49660571	49660571	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr6:49660571G>A	uc003ozq.2	-	10	903	c.647C>T	c.(646-648)TCC>TTC	p.S216F	CRISP2_uc003ozl.2_Missense_Mutation_p.S216F|CRISP2_uc003ozn.2_Missense_Mutation_p.S216F|CRISP2_uc003ozr.2_Missense_Mutation_p.S216F|CRISP2_uc003ozo.2_Missense_Mutation_p.S216F|CRISP2_uc003ozm.2_Missense_Mutation_p.S251F|CRISP2_uc003ozp.2_Missense_Mutation_p.S216F	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	216						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			ATTCTTCAAGGAATCACAGTT	0.378													10	21					0	0	0.000442599	0	0
SUN1	23353	broad.mit.edu	37	7	892493	892493	+	Silent	SNP	C	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:892493C>G	uc011jvp.1	+	10	1036	c.957C>G	c.(955-957)CCC>CCG	p.P319P	GET4_uc003sjj.1_RNA|SUN1_uc003sjf.2_Silent_p.P236P|SUN1_uc011jvq.1_Silent_p.P216P|SUN1_uc003sjg.2_Silent_p.P224P|SUN1_uc011jvr.1_Silent_p.P128P|SUN1_uc003sji.2_Silent_p.P157P|SUN1_uc003sjk.2_5'UTR	NM_001130965	NP_001124437	O94901	SUN1_HUMAN	unc-84 homolog A isoform a	346	Perinuclear space.				cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0						CGTTCTTGCCCGTGTTGAACT	0.527													3	65					0	0	6.4e-05	0	0
CARD11	84433	broad.mit.edu	37	7	2954975	2954975	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:2954975C>T	uc003smv.2	-	21	3139	c.2735G>A	c.(2734-2736)CGG>CAG	p.R912Q		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	912					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		GCTGTTCATCCGCTTATACTT	0.597			Mis		DLBCL								17	13					0	0	7.07596e-05	0	0
PHF14	9678	broad.mit.edu	37	7	11209072	11209072	+	Silent	SNP	T	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:11209072T>C	uc003srz.2	+	18	3237	c.2802T>C	c.(2800-2802)AAT>AAC	p.N934N	PHF14_uc011jxj.1_Silent_p.N649N|PHF14_uc003ssa.2_RNA	NM_001007157	NP_001007158	O94880	PHF14_HUMAN	PHD finger protein 14 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							zinc ion binding			kidney(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.205)		AAAGAAAAAATATATCTCAGG	0.269													11	30					0	0	0.000151284	0	0
ITGB8	3696	broad.mit.edu	37	7	20434519	20434519	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:20434519G>A	uc003suu.2	+	8	1762	c.1057G>A	c.(1057-1059)GAT>AAT	p.D353N	ITGB8_uc011jyh.1_Missense_Mutation_p.D218N|ITGB8_uc003sut.2_Missense_Mutation_p.D353N	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	353	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						TGTTTTATAGGATCTTCTACC	0.353													24	20					0	0	0.000586117	0	0
ZNRF2	223082	broad.mit.edu	37	7	30402031	30402031	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:30402031C>G	uc003tat.2	+	4	1761	c.710C>G	c.(709-711)CCT>CGT	p.P237R		NM_147128	NP_667339	Q8NHG8	ZNRF2_HUMAN	zinc finger/RING finger 2	237	RING-type; atypical.					cell junction|endosome membrane|lysosomal membrane|presynaptic membrane	ligase activity|zinc ion binding				0						AGATCTTGCCCTGAGCACCCT	0.308													3	68					0	0	6.4e-05	0	0
GPR141	353345	broad.mit.edu	37	7	37780115	37780115	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:37780115C>T	uc003tfm.1	+	1	120	c.120C>T	c.(118-120)TTC>TTT	p.F40F	uc003tfl.2_Intron	NM_181791	NP_861456	Q7Z602	GP141_HUMAN	G protein-coupled receptor 141	40	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3						CCATTCTTTTCCTCCTGGTGA	0.498													10	17					0	0	0.000442599	0	0
COBL	23242	broad.mit.edu	37	7	51096770	51096770	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:51096770C>T	uc003tpr.3	-	10	2208	c.2023G>A	c.(2023-2025)GAC>AAC	p.D675N	COBL_uc003tps.2_Missense_Mutation_p.D732N|COBL_uc011kcl.1_Missense_Mutation_p.D675N|COBL_uc003tpp.3_Missense_Mutation_p.D461N|COBL_uc003tpq.3_Missense_Mutation_p.D616N|COBL_uc003tpo.3_Missense_Mutation_p.D217N	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	675										skin(3)|ovary(2)	5	Glioma(55;0.08)					TCGTTGCTGTCCTTTTCATTC	0.493													20	54					0	0	0.000586117	0	0
VSTM2A	222008	broad.mit.edu	37	7	54612388	54612388	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:54612388G>A	uc010kzf.2	+	2	558	c.153G>A	c.(151-153)CAG>CAA	p.Q51Q	VSTM2A_uc010kze.2_Silent_p.Q51Q|VSTM2A_uc003tqc.3_Silent_p.Q51Q	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	51	Ig-like V-type.					extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			GCGCCTTCCAGAGCGGCTCCG	0.642													10	21					0	0	0.00010058	0	0
SEPT14	346288	broad.mit.edu	37	7	55863638	55863638	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:55863638C>G	uc003tqz.2	-	10	1384	c.1267G>C	c.(1267-1269)GAT>CAT	p.D423H		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	423					cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TTCTTTGTATCGGTGCTCAGC	0.373													3	92					0	0	6.4e-05	0	0
POM121	9883	broad.mit.edu	37	7	72413896	72413896	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:72413896A>G	uc003twk.2	+	11	3364	c.3364A>G	c.(3364-3366)ACC>GCC	p.T1122A	POM121_uc003twj.2_Missense_Mutation_p.T857A|POM121_uc010lam.1_Missense_Mutation_p.T857A	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	1122	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				AGGCTCCAGCACCACCACCGG	0.637													3	11					0	0	6.4e-05	0	0
ELN	2006	broad.mit.edu	37	7	73449730	73449730	+	Missense_Mutation	SNP	G	A	A	rs55951999		TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:73449730G>A	uc003tzw.2	+	2	210	c.119G>A	c.(118-120)GGA>GAA	p.G40E	RFC2_uc011kfa.1_Intron|ELN_uc003tzm.1_RNA|ELN_uc011kfe.1_Missense_Mutation_p.G40E|ELN_uc003tzn.2_Missense_Mutation_p.G40E|ELN_uc003tzz.2_Missense_Mutation_p.G40E|ELN_uc003tzo.2_Missense_Mutation_p.G40E|ELN_uc003tzp.2_Missense_Mutation_p.G40E|ELN_uc003tzq.2_Missense_Mutation_p.G40E|ELN_uc003tzr.2_RNA|ELN_uc003tzs.2_Missense_Mutation_p.G40E|ELN_uc003tzt.2_Missense_Mutation_p.G40E|ELN_uc003tzu.2_Missense_Mutation_p.G40E|ELN_uc003tzv.2_Missense_Mutation_p.G40E|ELN_uc003tzx.2_Missense_Mutation_p.G40E|ELN_uc011kff.1_Missense_Mutation_p.G40E|ELN_uc003tzy.2_Missense_Mutation_p.G40E	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	40					blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	GTTCCTGGAGGAGTCTTTTAT	0.448			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						8	19					0	0	3.86212e-05	0	0
ABCB1	5243	broad.mit.edu	37	7	87160746	87160746	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:87160746G>A	uc003uiz.1	-	22	2967	c.2549C>T	c.(2548-2550)TCC>TTC	p.S850F	ABCB1_uc011khc.1_Missense_Mutation_p.S786F	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	850	Helical; (Potential).|ABC transmembrane type-1 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	ATAGATGAAGGATATAATTAT	0.358													12	22					0	0	6.40141e-05	0	0
FBXO24	26261	broad.mit.edu	37	7	100184267	100184267	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:100184267C>T	uc003uvm.1	+	1	312	c.19C>T	c.(19-21)CCT>TCT	p.P7S	LRCH4_uc003uvi.2_5'Flank|LRCH4_uc003uvj.2_5'Flank|LRCH4_uc011kjx.1_5'Flank|FBXO24_uc010lha.1_RNA|FBXO24_uc003uvl.1_Missense_Mutation_p.P7S|FBXO24_uc003uvn.1_5'UTR|FBXO24_uc011kjz.1_5'Flank|FBXO24_uc011kka.1_5'Flank	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	7						ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					GAAGGCGGTCCCTTTGCTAAG	0.577													6	25					0	0	8.12818e-05	0	0
RELN	5649	broad.mit.edu	37	7	103205799	103205799	+	Silent	SNP	C	T	T	rs147933593		TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:103205799C>T	uc003vca.2	-	34	5296	c.5136G>A	c.(5134-5136)ACG>ACA	p.T1712T	RELN_uc010liz.2_Silent_p.T1712T	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1712					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TTGAACTTTCCGTGTAATGCA	0.468													9	23					0	0	0.000442599	0	0
ST7	7982	broad.mit.edu	37	7	116869938	116869938	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:116869938A>C	uc011knn.1	+	14	1470	c.1465A>C	c.(1465-1467)ACC>CCC	p.T489P	ST7_uc003vio.2_3'UTR|ST7_uc003viq.2_3'UTR|ST7_uc011knm.1_3'UTR|ST7_uc003vir.2_3'UTR	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	Error:Variant_position_missing_in_Q9NRC1_after_alignment						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		CACTCACCTCACCCGCCGCTG	0.507													8	9					0	0	9.7654e-05	0	0
C7orf58	79974	broad.mit.edu	37	7	120906284	120906284	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:120906284C>T	uc003vjq.3	+	19	2761	c.2314C>T	c.(2314-2316)CTG>TTG	p.L772L		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	772						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					CTTATAGATTCTGTTCATTGG	0.323													13	15					0	0	0.00010058	0	0
TAS2R16	50833	broad.mit.edu	37	7	122635418	122635418	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:122635418G>T	uc003vkl.1	-	1	337	c.271C>A	c.(271-273)CTT>ATT	p.L91I		NM_016945	NP_058641	Q9NYV7	T2R16_HUMAN	taste receptor T2R16	91	Helical; Name=3; (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste	endoplasmic reticulum|external side of plasma membrane|trans-Golgi network	bitter taste receptor activity|protein binding			ovary(1)|skin(1)	2						CAGAATGTAAGGATATTAAAA	0.378													7	8					2.0095e-06	3.13319e-05	8.12818e-05	1	0
SLC13A1	6561	broad.mit.edu	37	7	122774551	122774551	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:122774551C>T	uc003vkm.2	-	8	870	c.845G>A	c.(844-846)GGA>GAA	p.G282E	SLC13A1_uc010lks.2_Missense_Mutation_p.G158E	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	282						integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	AAACCATGATCCAAAGTTGAG	0.448													9	39					0	0	3.86212e-05	0	0
SPAM1	6677	broad.mit.edu	37	7	123594244	123594244	+	Missense_Mutation	SNP	G	A	A	rs113752093		TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:123594244G>A	uc003vld.2	+	4	1022	c.620G>A	c.(619-621)GGA>GAA	p.G207E	SPAM1_uc003vle.2_Missense_Mutation_p.G207E|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Missense_Mutation_p.G207E|SPAM1_uc010lku.2_Missense_Mutation_p.G207E	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	207					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	ATAAAATTGGGAAAATTACTT	0.383													7	10					0	0	8.12818e-05	0	0
PLXNA4	91584	broad.mit.edu	37	7	131864632	131864632	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:131864632G>A	uc003vra.3	-	20	3917	c.3688C>T	c.(3688-3690)CCG>TCG	p.P1230S		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1230	IPT/TIG 4.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GGGCTGTCCGGGGCAATGTAC	0.637													9	10					0	0	3.86212e-05	0	0
OR6V1	346517	broad.mit.edu	37	7	142749899	142749899	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:142749899G>A	uc011ksv.1	+	1	462	c.462G>A	c.(460-462)ATG>ATA	p.M154I		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					TCCTAGCCATGGTACCCACTG	0.567													25	45					0	0	9.22233e-05	0	0
MLL3	58508	broad.mit.edu	37	7	151880143	151880144	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr7:151880143_151880144GG>TT	uc003wla.2	-	35	5399_5400	c.5180_5181CC>AA	c.(5179-5181)CCC>CAA	p.P1727Q	MLL3_uc003wkz.2_Missense_Mutation_p.P788Q	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1727	Gln-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TACGAGAGCTGGGATCAATGCT	0.371			N		medulloblastoma								11	313					0	0	6.4e-05	0	0
RP1L1	94137	broad.mit.edu	37	8	10466818	10466818	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:10466818C>T	uc003wtc.2	-	4	5019	c.4790G>A	c.(4789-4791)GGG>GAG	p.G1597E		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1597					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GAGCAGCTCCCCGGTGAGGGC	0.697													4	13					0	0	0.00024832	0	0
NAT2	10	broad.mit.edu	37	8	18258111	18258111	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:18258111G>A	uc003wyw.1	+	2	705	c.598G>A	c.(598-600)GAA>AAA	p.E200K		NM_000015	NP_000006	P11245	ARY2_HUMAN	N-acetyltransferase 2	200					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity			ovary(1)|skin(1)	2				Colorectal(111;0.0531)|COAD - Colon adenocarcinoma(73;0.21)		TCGAACAATTGAAGATTTTGA	0.358									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				26	39					0	0	0.000184323	0	0
UNC5D	137970	broad.mit.edu	37	8	35425666	35425666	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:35425666G>A	uc003xjr.1	+	3	701	c.373G>A	c.(373-375)GAC>AAC	p.D125N	UNC5D_uc003xjs.1_Missense_Mutation_p.D120N	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	125	Extracellular (Potential).|Ig-like.				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		ACAGGTGGAGGACTTCCATGG	0.522													21	49					0	0	0.000295444	0	0
TGS1	96764	broad.mit.edu	37	8	56698986	56698986	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:56698986A>G	uc003xsj.3	+	4	916	c.529A>G	c.(529-531)ACT>GCT	p.T177A	TGS1_uc010lyh.2_Missense_Mutation_p.T81A	NM_024831	NP_079107	Q96RS0	TGS1_HUMAN	trimethylguanosine synthase homolog	177					cellular lipid metabolic process|ncRNA metabolic process|regulation of transcription, DNA-dependent|RNA capping|spliceosomal snRNP assembly|transcription, DNA-dependent	Cajal body|cytosol	RNA trimethylguanosine synthase activity			ovary(1)|lung(1)|breast(1)	3		all_lung(136;0.119)|all_epithelial(80;0.125)|Lung NSC(129;0.147)	Epithelial(17;0.00027)|all cancers(17;0.00251)			CAAAAAAGATACTGAGACAGA	0.343													13	28					0	0	0.000151284	0	0
LYN	4067	broad.mit.edu	37	8	56912056	56912056	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:56912056C>T	uc003xsk.3	+	12	1566	c.1284C>T	c.(1282-1284)TCC>TCT	p.S428S	LYN_uc003xsl.3_Silent_p.S407S	NM_002350	NP_002341	P07948	LYN_HUMAN	Yamaguchi sarcoma viral (v-yes-1) oncogene	428	Protein kinase.				erythrocyte differentiation|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of cellular component movement|positive regulation of stress-activated protein kinase signaling cascade|positive regulation of tyrosine phosphorylation of STAT protein|response to DNA damage stimulus|T cell costimulation	cytosol|Golgi apparatus|membrane raft|nucleus|perinuclear region of cytoplasm	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|receptor signaling protein tyrosine kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_lung(136;0.0555)|Lung NSC(129;0.0726)|all_epithelial(80;0.0772)	Epithelial(17;0.000834)|all cancers(17;0.00598)			ATGTGTGGTCCTTTGGAATCC	0.388													18	31					0	0	9.7654e-05	0	0
MMP16	4325	broad.mit.edu	37	8	89180031	89180031	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:89180031G>A	uc003yeb.3	-	4	858	c.576C>T	c.(574-576)TTC>TTT	p.F192F	MMP16_uc003yec.2_Silent_p.F192F	NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	192	Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						TGTCCCCATGGAAACCAGATG	0.443													6	16					0	0	3.59834e-05	0	0
NBN	4683	broad.mit.edu	37	8	90982690	90982690	+	Silent	SNP	C	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:90982690C>G	uc003yej.1	-	7	908	c.798G>C	c.(796-798)CCG>CCC	p.P266P	NBN_uc003yei.1_Silent_p.P184P|NBN_uc011lgb.1_Silent_p.P266P	NM_002485	NP_002476	O60934	NBN_HUMAN	nibrin	266					cell cycle arrest|DNA damage response, signal transduction by p53 class mediator|DNA duplex unwinding|double-strand break repair via homologous recombination|meiosis|mitotic cell cycle G1/S transition checkpoint|mitotic cell cycle G2/M transition DNA damage checkpoint|positive regulation of kinase activity|positive regulation of protein autophosphorylation|regulation of DNA-dependent DNA replication initiation|telomere maintenance	Mre11 complex|nuclear chromosome, telomeric region|nuclear inclusion body|nucleolus|nucleoplasm	protein N-terminus binding|transcription factor binding			central_nervous_system(3)|kidney(3)|lung(1)	7			BRCA - Breast invasive adenocarcinoma(11;0.0344)			CACACGTTCCCGGAGCCAAAA	0.393								Direct_reversal_of_damage|Homologous_recombination	Nijmegen_Breakage_syndrome				3	52					0	0	6.4e-05	0	0
DECR1	1666	broad.mit.edu	37	8	91029411	91029411	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:91029411C>T	uc003yek.1	+	2	270	c.129C>T	c.(127-129)TTC>TTT	p.F43F	DECR1_uc011lgc.1_Silent_p.F34F|DECR1_uc011lgd.1_Intron	NM_001359	NP_001350	Q16698	DECR_HUMAN	2,4-dienoyl CoA reductase 1 precursor	43					fatty acid beta-oxidation|protein homotetramerization	mitochondrial matrix|nucleus|plasma membrane	2,4-dienoyl-CoA reductase (NADPH) activity|NADPH binding|oxidoreductase activity, acting on NADH or NADPH				0			BRCA - Breast invasive adenocarcinoma(11;0.00953)			AATCTAAATTCTTTTCACCTC	0.333													16	41					0	0	7.07596e-05	0	0
NECAB1	64168	broad.mit.edu	37	8	91937813	91937813	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:91937813G>A	uc011lgg.1	+	7	739	c.545G>A	c.(544-546)CGA>CAA	p.R182Q		NM_022351	NP_071746	Q8N987	NECA1_HUMAN	N-terminal EF-hand calcium binding protein 1	182					antibiotic biosynthetic process	cytoplasm	calcium ion binding|oxidoreductase activity			central_nervous_system(1)	1			BRCA - Breast invasive adenocarcinoma(11;0.0499)			CCTGGAAAACGATCAAGCCGC	0.463													5	10					0	0	0.000602214	0	0
GEM	2669	broad.mit.edu	37	8	95272502	95272502	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:95272502C>T	uc003ygj.2	-	2	479	c.230G>A	c.(229-231)CGA>CAA	p.R77Q	GEM_uc003ygi.2_Missense_Mutation_p.R77Q	NM_005261	NP_005252	P55040	GEM_HUMAN	GTP-binding mitogen-induced T-cell protein	77					cell surface receptor linked signaling pathway|immune response|small GTPase mediated signal transduction	internal side of plasma membrane	calmodulin binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding			lung(1)	1	Breast(36;4.65e-06)	Myeloproliferative disorder(644;0.204)	BRCA - Breast invasive adenocarcinoma(8;0.00691)			GAGCACCACTCGGTAGTAGGT	0.592													8	16					0	0	0.000274275	0	0
ESRP1	54845	broad.mit.edu	37	8	95674561	95674562	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:95674561_95674562GG>TT	uc003ygq.3	+	5	735_736	c.552_553GG>TT	c.(550-555)ATGGGG>ATTTGG	p.184_185MG>IW	ESRP1_uc003ygr.3_Missense_Mutation_p.184_185MG>IW|ESRP1_uc003ygs.3_Missense_Mutation_p.184_185MG>IW|ESRP1_uc003ygt.3_Missense_Mutation_p.184_185MG>IW|ESRP1_uc003ygu.3_Missense_Mutation_p.184_185MG>IW|ESRP1_uc003ygv.2_Missense_Mutation_p.24_25MG>IW|ESRP1_uc003ygw.2_Missense_Mutation_p.24_25MG>IW	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	184_185					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						TTGAAGATATGGGGAATATAAT	0.327													12	397					0	0	6.4e-05	0	0
DPY19L4	286148	broad.mit.edu	37	8	95768263	95768264	+	Splice_Site	DNP	GG	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:95768263_95768264GG>TT	uc003ygx.2	+	7	736	c.612_splice	c.e7-1	p.R204_splice		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4							integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					GTTTATTTTAGGGTAGATACAA	0.213													11	278					0	0	6.4e-05	0	0
DPY19L4	286148	broad.mit.edu	37	8	95777452	95777453	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:95777452_95777453GG>TT	uc003ygx.2	+	9	1036_1037	c.912_913GG>TT	c.(910-915)CTGGGA>CTTTGA	p.G305*		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	305	Helical; (Potential).					integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					CCCTCTTTCTGGGATATTTACT	0.297													12	389					0	0	6.4e-05	0	0
INTS8	55656	broad.mit.edu	37	8	95839555	95839556	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:95839555_95839556GG>TT	uc003yhb.2	+	3	496_497	c.370_371GG>TT	c.(370-372)GGG>TTG	p.G124L	INTS8_uc003yha.1_Missense_Mutation_p.G124L|INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_5'Flank	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	124					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					AGTTCCTCCTGGGACAAAGCAT	0.391													14	390					0	0	6.4e-05	0	0
SNX31	169166	broad.mit.edu	37	8	101629886	101629886	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:101629886C>T	uc003yjr.2	-	5	545	c.394G>A	c.(394-396)GAA>AAA	p.E132K	SNX31_uc011lhb.1_Missense_Mutation_p.E33K	NM_152628	NP_689841	Q8N9S9	SNX31_HUMAN	sorting nexin 31	132					cell communication|protein transport		phosphatidylinositol binding				0	all_cancers(14;4.01e-05)|all_epithelial(15;1.26e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;1.21e-11)|all cancers(13;2.62e-09)|OV - Ovarian serous cystadenocarcinoma(57;3.22e-06)|STAD - Stomach adenocarcinoma(118;0.206)			GTTATAATTTCGATTCTAATA	0.368													36	53					0	0	0.000191422	0	0
RIMS2	9699	broad.mit.edu	37	8	105001569	105001569	+	Silent	SNP	T	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:105001569T>G	uc003yls.2	+	15	2539	c.2298T>G	c.(2296-2298)ACT>ACG	p.T766T	RIMS2_uc003ylp.2_Silent_p.T988T|RIMS2_uc003ylw.2_Silent_p.T780T|RIMS2_uc003ylq.2_Silent_p.T780T|RIMS2_uc003ylr.2_Silent_p.T827T	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1050					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			GGACCCGCACTATGACCGGAC	0.383										HNSCC(12;0.0054)			15	53					0	0	0.000422831	0	0
SAMD12	401474	broad.mit.edu	37	8	119391765	119391766	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:119391765_119391766CC>TT	uc003yom.2	-	4	625_626	c.496_497GG>AA	c.(496-498)GGG>AAG	p.G166K	SAMD12_uc010mda.1_Intron|SAMD12_uc010mdb.1_Intron	NM_207506	NP_997389	Q8N8I0	SAM12_HUMAN	sterile alpha motif domain containing 12 isoform	166										ovary(1)	1	all_cancers(13;3.91e-25)|Lung NSC(37;1.13e-07)|Ovarian(258;0.0249)		STAD - Stomach adenocarcinoma(47;0.00391)			TCTAATCTCCCCATCCATCCAC	0.416													11	11					0	0	6.4e-05	0	0
ZHX1	11244	broad.mit.edu	37	8	124268124	124268124	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:124268124G>A	uc003yqe.2	-	3	493	c.63C>T	c.(61-63)GAC>GAT	p.D21D	C8orf76_uc003yqd.2_Intron|ZHX1_uc003yqf.2_Silent_p.D21D|ZHX1_uc003yqg.2_Intron|ZHX1_uc010mdi.2_Silent_p.D21D	NM_007222	NP_009153	Q9UKY1	ZHX1_HUMAN	zinc fingers and homeoboxes 1	21					negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			TCAACTCAAGGTCTGGATCTT	0.428													33	64					0	0	0.000409698	0	0
ANXA13	312	broad.mit.edu	37	8	124705977	124705977	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:124705977C>G	uc003yqu.2	-	7	587	c.514G>C	c.(514-516)GGT>CGT	p.G172R	ANXA13_uc003yqt.2_Missense_Mutation_p.G213R	NM_004306	NP_004297	P27216	ANX13_HUMAN	annexin A13 isoform a	172					cell differentiation	plasma membrane	calcium ion binding|calcium-dependent phospholipid binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(37;2.06e-11)|Ovarian(258;0.00579)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00288)			GCATCCTGACCAGCTAGATCT	0.353													4	130					0	0	0.000602214	0	0
BAI1	575	broad.mit.edu	37	8	143570442	143570442	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:143570442G>A	uc003ywm.2	+	14	2682	c.2499G>A	c.(2497-2499)AGG>AGA	p.R833R		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	833	Extracellular (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding	p.R833M(1)		lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					TGCTCTACAGGAACCTGGGCA	0.672													4	8					0	0	0.00024832	0	0
GML	2765	broad.mit.edu	37	8	143922535	143922535	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr8:143922535G>A	uc003yxg.2	+	3	165	c.75G>A	c.(73-75)TGG>TGA	p.W25*		NM_002066	NP_002057	Q99445	GML_HUMAN	glycosylphosphatidylinositol anchored molecule	25					apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|negative regulation of cell proliferation	anchored to membrane|extrinsic to membrane|plasma membrane				central_nervous_system(2)	2	all_cancers(97;4.26e-11)|all_epithelial(106;1.85e-08)|Lung NSC(106;0.000274)|all_lung(105;0.000755)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					CCCTCTCAGGGACTTACAGTT	0.502													13	18					0	0	0.00010058	0	0
CA9	768	broad.mit.edu	37	9	35674227	35674227	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr9:35674227G>A	uc003zxo.3	+	1	313	c.271G>A	c.(271-273)GGA>AGA	p.G91R	C9orf100_uc003zxl.2_RNA|CA9_uc003zxp.3_Missense_Mutation_p.G91R	NM_001216	NP_001207	Q16790	CAH9_HUMAN	carbonic anhydrase IX precursor	91	Extracellular.|Proteoglycan-like (PG).				one-carbon metabolic process	integral to membrane|microvillus membrane|nucleolus	carbonate dehydratase activity|zinc ion binding			ovary(4)|skin(1)	5	all_epithelial(49;0.217)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			GGATCTACCTGGAGAGGAGGA	0.537													9	7					0	0	0.000274275	0	0
RGP1	9827	broad.mit.edu	37	9	35751265	35751265	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr9:35751265C>T	uc011lpf.1	+	6	631	c.490C>T	c.(490-492)CTT>TTT	p.L164F	GBA2_uc011lpb.1_5'Flank|GBA2_uc003zxw.2_5'Flank|GBA2_uc011lpc.1_5'Flank|GBA2_uc011lpd.1_5'Flank|RGP1_uc011lpe.1_Missense_Mutation_p.L204F	NM_001080496	NP_001073965	Q92546	RGP1_HUMAN	RGP1 retrograde golgi transport homolog	164										ovary(1)	1	all_epithelial(49;0.167)		Lung(28;0.00416)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TTCTCTAGGCCTTCAGGATGT	0.488													13	111					0	0	0.000219431	0	0
RNF38	152006	broad.mit.edu	37	9	36356326	36356326	+	Missense_Mutation	SNP	G	A	A	rs149052036		TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr9:36356326G>A	uc003zzh.2	-	6	1074	c.883C>T	c.(883-885)CCT>TCT	p.P295S	RNF38_uc003zzi.2_Missense_Mutation_p.P245S|RNF38_uc003zzj.2_Missense_Mutation_p.P212S|RNF38_uc003zzk.2_Missense_Mutation_p.P212S|RNF38_uc003zzl.2_Missense_Mutation_p.P219S|RNF38_uc003zzm.2_Missense_Mutation_p.P212S	NM_022781	NP_073618	Q9H0F5	RNF38_HUMAN	ring finger protein 38 isoform 1	295	Pro-rich.						zinc ion binding			central_nervous_system(1)	1			STAD - Stomach adenocarcinoma(86;0.228)			GTTTGGAAAGGGACAAACTGG	0.398													7	30					0	0	0.000157383	0	0
INVS	27130	broad.mit.edu	37	9	103014720	103014720	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr9:103014720G>A	uc004bap.1	+	9	1446	c.1234G>A	c.(1234-1236)GGT>AGT	p.G412S	INVS_uc010mta.1_Missense_Mutation_p.G316S|INVS_uc011lve.1_Missense_Mutation_p.G316S|INVS_uc004bao.1_Missense_Mutation_p.G412S|INVS_uc004baq.1_Missense_Mutation_p.G316S|INVS_uc004bar.1_Missense_Mutation_p.G316S|INVS_uc010mtb.1_Missense_Mutation_p.G86S	NM_014425	NP_055240	Q9Y283	INVS_HUMAN	inversin isoform a	412	ANK 12.				negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|membrane|microtubule|nucleus|spindle	calmodulin binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.056)				ACTCATTAAAGGTGGGCTAAT	0.383													6	10					0	0	3.59834e-05	0	0
ALDOB	229	broad.mit.edu	37	9	104187759	104187759	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr9:104187759G>A	uc004bbk.2	-	7	857	c.775C>T	c.(775-777)CGT>TGT	p.R259C		NM_000035	NP_000026	P05062	ALDOB_HUMAN	aldolase B, fructose-bisphosphate	259					fructose 1,6-bisphosphate metabolic process|fructose catabolic process|gluconeogenesis|glycolysis|NADH oxidation|positive regulation of ATPase activity|vacuolar proton-transporting V-type ATPase complex assembly	centriolar satellite|cytosol	ATPase binding|cytoskeletal protein binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				GGAACAGTACGGTGGAGAGCT	0.507													20	65					0	0	0.000295444	0	0
CYLC2	1539	broad.mit.edu	37	9	105767454	105767454	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr9:105767454G>A	uc004bbs.2	+	5	611	c.541G>A	c.(541-543)GAA>AAA	p.E181K		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	181	3 X approximate tandem repeats.|31 X 3 AA repeats of K-K-X.|1.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				atctgaagatgaaaaaggagg	0.119													9	22					0	0	0.000274275	0	0
TLR4	7099	broad.mit.edu	37	9	120476607	120476607	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr9:120476607T>C	uc004bjz.2	+	3	2492	c.2201T>C	c.(2200-2202)ATT>ACT	p.I734T	TLR4_uc004bka.2_Missense_Mutation_p.I694T|TLR4_uc004bkb.2_Missense_Mutation_p.I534T	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	734	Cytoplasmic (Potential).|TIR.				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						CGAAAGGTGATTGTTGTGGTG	0.488													5	22					0	0	0.000602214	0	0
TTC16	158248	broad.mit.edu	37	9	130489630	130489630	+	Silent	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr9:130489630G>A	uc004brq.1	+	12	1717	c.1650G>A	c.(1648-1650)GCG>GCA	p.A550A	PTRH1_uc011mah.1_5'Flank|TTC16_uc011mai.1_Silent_p.A537A|TTC16_uc004brr.1_Silent_p.A400A|TTC16_uc010mxn.1_Silent_p.A146A	NM_144965	NP_659402	Q8NEE8	TTC16_HUMAN	tetratricopeptide repeat domain 16	550							binding				0						CTTTGATTGCGACCTCCGAGG	0.547													6	12					0	0	3.59834e-05	0	0
COL5A1	1289	broad.mit.edu	37	9	137623932	137623933	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr9:137623932_137623933GG>AA	uc004cfe.2	+	9	1730_1731	c.1348_1349GG>AA	c.(1348-1350)GGC>AAC	p.G450N		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	450	Interrupted collagenous region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		AGGACCTCGGGGCGAGAAAGGC	0.53													8	32					0	0	6.4e-05	0	0
NOTCH1	4851	broad.mit.edu	37	9	139395206	139395206	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr9:139395206G>A	uc004chz.2	-	31	5732	c.5732C>T	c.(5731-5733)TCC>TTC	p.S1911F		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	1911	Cytoplasmic (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GATGAAGTCGGAGATGACGGC	0.682			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			7	28					0	0	8.12818e-05	0	0
WWC3	55841	broad.mit.edu	37	X	10106812	10106812	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:10106812C>T	uc004csx.3	+	21	3118	c.2920C>T	c.(2920-2922)CAG>TAG	p.Q974*	WWC3_uc010nds.2_Nonsense_Mutation_p.Q638*|WWC3_uc010ndt.2_RNA	NM_015691	NP_056506	Q9ULE0	WWC3_HUMAN	WWC family member 3	974	Potential.									ovary(4)	4						GCTGGATCTCCAGGCGTCGAG	0.652													5	18					0	0	0.000602214	0	0
BMX	660	broad.mit.edu	37	X	15554480	15554480	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:15554480G>A	uc004cww.2	+	13	1340	c.1152G>A	c.(1150-1152)ATG>ATA	p.M384I	BMX_uc004cwx.3_Missense_Mutation_p.M384I|BMX_uc004cwy.3_Missense_Mutation_p.M384I	NM_203281	NP_975010	P51813	BMX_HUMAN	BMX non-receptor tyrosine kinase	384	SH2.				cellular component disassembly involved in apoptosis|intracellular signal transduction|mesoderm development	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(3)|ovary(2)	5	Hepatocellular(33;0.183)					TTGCAGGCATGATCACACGGC	0.353													19	40					0	0	0.000132079	0	0
CDKL5	6792	broad.mit.edu	37	X	18646512	18646512	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:18646512C>T	uc004cym.2	+	18	2771	c.2518C>T	c.(2518-2520)CGC>TGC	p.R840C	CDKL5_uc004cyn.2_Missense_Mutation_p.R840C	NM_003159	NP_003150	O76039	CDKL5_HUMAN	cyclin-dependent kinase-like 5	840					neuron migration|positive regulation of axon extension|positive regulation of dendrite morphogenesis|positive regulation of Rac GTPase activity|protein autophosphorylation	dendrite cytoplasm|dendritic growth cone|nucleus	ATP binding|cyclin-dependent protein kinase activity|Rac GTPase binding			ovary(2)|large_intestine(1)|stomach(1)|central_nervous_system(1)|skin(1)	6	Hepatocellular(33;0.183)					AAAATCACTGCGCAAGTTGTT	0.493													90	180					0	0	0.000147903	0	0
SH3KBP1	30011	broad.mit.edu	37	X	19854289	19854289	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:19854289C>T	uc004czm.2	-	2	432	c.116G>A	c.(115-117)GGA>GAA	p.G39E		NM_031892	NP_114098	Q96B97	SH3K1_HUMAN	SH3-domain kinase binding protein 1 isoform a	39	SH3 1.				apoptosis|cell-cell signaling|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytoplasmic vesicle membrane|cytoskeleton|cytosol|focal adhesion|nucleus|synapse|synaptosome	SH3 domain binding				0						GTTGATCTGTCCCTCCCACCA	0.522													33	47					0	0	0.000159656	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212241	26212241	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:26212241G>T	uc004dbr.2	+	2	427	c.278G>T	c.(277-279)AGT>ATT	p.S93I	MAGEB6_uc010ngc.1_Splice_Site	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	93	Ser-rich.									ovary(3)	3						GATGAGAAAAGTCCAAGCACC	0.522													19	44					6.94344e-10	1.0894e-08	7.07596e-05	1	0
CLCN5	1184	broad.mit.edu	37	X	49854958	49854958	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:49854958G>A	uc004dos.1	+	10	1968	c.1720G>A	c.(1720-1722)GAA>AAA	p.E574K	CLCN5_uc004dor.1_Missense_Mutation_p.E644K|CLCN5_uc004doq.1_Missense_Mutation_p.E644K|CLCN5_uc004dot.1_Missense_Mutation_p.E574K	NM_000084	NP_000075	P51795	CLCN5_HUMAN	chloride channel 5 isoform b	574	Cytoplasmic (By similarity).				excretion	apical part of cell|endosome membrane|Golgi membrane|integral to plasma membrane	antiporter activity|ATP binding			ovary(2)|lung(1)|central_nervous_system(1)	4	Ovarian(276;0.236)					TGAAGCCAAAGAAGAGTTTGC	0.498													7	19					0	0	8.12818e-05	0	0
BMP15	9210	broad.mit.edu	37	X	50658933	50658933	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:50658933G>A	uc011mnw.1	+	2	505	c.505G>A	c.(505-507)GGA>AGA	p.G169R		NM_005448	NP_005439	O95972	BMP15_HUMAN	bone morphogenetic protein 15 precursor	169					female gamete generation|granulosa cell development|ovarian follicle development	extracellular space	cytokine activity|growth factor activity			ovary(2)	2	Ovarian(276;0.236)					TTCCTCAGAAGGAGATTCCTC	0.478													13	28					0	0	0.00010058	0	0
HUWE1	10075	broad.mit.edu	37	X	53592178	53592178	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:53592178T>C	uc004dsp.2	-	50	7132	c.6730A>G	c.(6730-6732)AAT>GAT	p.N2244D	HUWE1_uc004dsn.2_Missense_Mutation_p.N1068D	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	2244					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						AGAGCAGCATTGACTGTGTTG	0.453													8	15					0	0	0.000274275	0	0
GNL3L	54552	broad.mit.edu	37	X	54569418	54569418	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:54569418C>T	uc004dth.1	+	6	476	c.337C>T	c.(337-339)CCT>TCT	p.P113S	GNL3L_uc004dti.2_RNA	NM_019067	NP_061940	Q9NVN8	GNL3L_HUMAN	guanine nucleotide binding protein-like 3	113					ribosome biogenesis	nucleolus	GTP binding			ovary(1)	1						AAATATGTTTCCTCAGCTGGA	0.488													5	24					0	0	0.000602214	0	0
NAP1L2	4674	broad.mit.edu	37	X	72434322	72434322	+	Missense_Mutation	SNP	C	T	T	rs17852391		TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:72434322C>T	uc004ebi.2	-	1	363	c.7G>A	c.(7-9)GAG>AAG	p.E3K	NAP1L2_uc011mqj.1_Intron	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	3				E -> K (in Ref. 6; AAH26325).	nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					TTCTCTGACTCGGCCATTTTT	0.527													24	58					0	0	0.000117367	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83320109	83320109	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:83320109G>A	uc004eej.1	-	21	2059	c.1982C>T	c.(1981-1983)TCC>TTC	p.S661F	RPS6KA6_uc011mqt.1_Missense_Mutation_p.S661F|RPS6KA6_uc011mqu.1_Missense_Mutation_p.S558F	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	661	Protein kinase 2.				axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						AAGCATATGGGAAAGCAAATC	0.303													15	36					0	0	0.000219431	0	0
ZNF711	7552	broad.mit.edu	37	X	84510572	84510572	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:84510572C>T	uc004eeo.2	+	4	734	c.387C>T	c.(385-387)TTC>TTT	p.F129F	ZNF711_uc004eep.2_Silent_p.F129F|ZNF711_uc004eeq.2_Silent_p.F129F	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	129					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						AGCAGGTTTTCGTGGCTGACC	0.448													29	52					0	0	0.000227799	0	0
CHRDL1	91851	broad.mit.edu	37	X	109931894	109931894	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:109931894G>A	uc004eou.3	-	9	1265	c.916C>T	c.(916-918)CGA>TGA	p.R306*	CHRDL1_uc004eov.2_Nonsense_Mutation_p.R300*|CHRDL1_uc004eow.2_Nonsense_Mutation_p.R305*|CHRDL1_uc010nps.2_Nonsense_Mutation_p.R305*|CHRDL1_uc004eot.2_Nonsense_Mutation_p.R226*|CHRDL1_uc011mss.1_Nonsense_Mutation_p.R220*	NM_001143981	NP_001137453	Q9BU40	CRDL1_HUMAN	chordin-like 1 isoform 1 precursor	299	VWFC 3.				BMP signaling pathway|cell differentiation|nervous system development|ossification	extracellular region					0						CAGGGGTATCGATTGGGGCAG	0.483													31	37					0	0	0.000409698	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795561	142795561	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:142795561C>T	uc004fbz.2	-	2	871	c.117G>A	c.(115-117)CAG>CAA	p.Q39Q		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	39										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TTTGCAAGCTCTGTTTGGGGG	0.403													10	28					0	0	3.86212e-05	0	0
MIR891B	100126304	broad.mit.edu	37	X	145082635	145082635	+	RNA	SNP	T	C	C			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:145082635T>C	hsa-mir-891b|MI0005534	-			c.15T>C																				0						CTCAGGTAAGTTGCAAGGATT	0.234													28	39					0	0	0.000227799	0	0
FATE1	89885	broad.mit.edu	37	X	150889962	150889962	+	Silent	SNP	C	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:150889962C>T	uc004fex.2	+	3	414	c.330C>T	c.(328-330)TTC>TTT	p.F110F		NM_033085	NP_149076	Q969F0	FATE1_HUMAN	fetal and adult testis expressed transcript	110						endoplasmic reticulum|integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GCATACGTTTCCATTATGATC	0.602													10	13					0	0	0.000442599	0	0
CNGA2	1260	broad.mit.edu	37	X	150912081	150912081	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:150912081G>A	uc004fey.1	+	7	1330	c.1106G>A	c.(1105-1107)GGA>GAA	p.G369E		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	369	Helical; Name=H5; (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					ACCATCGTGGGAAATGTGGGC	0.512													26	33					0	0	0.000184323	0	0
G6PD	2539	broad.mit.edu	37	X	153760419	153760419	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chrX:153760419G>A	uc004fly.1	-	12	1554	c.1441C>T	c.(1441-1443)CCC>TCC	p.P481S	G6PD_uc004flx.1_Missense_Mutation_p.P511S	NM_001042351	NP_001035810	P11413	G6PD_HUMAN	glucose-6-phosphate dehydrogenase isoform b	481					cellular response to oxidative stress|cholesterol biosynthetic process|cytokine production|erythrocyte maturation|glucose 6-phosphate metabolic process|glutathione metabolic process|negative regulation of protein glutathionylation|pentose-phosphate shunt, oxidative branch|ribose phosphate biosynthetic process	centrosome|cytosol|internal side of plasma membrane|intracellular membrane-bounded organelle	glucose binding|glucose-6-phosphate dehydrogenase activity|NADP binding|protein homodimerization activity			ovary(4)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TAAATATAGGGGATGGGCTTG	0.622													8	9					0	0	6.40141e-05	0	0
BAX	581	broad.mit.edu	37	19	49458216	49458216	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr19:49458216delG	uc002plk.2	+	1	100	c.31delG	c.(31-33)GGGfs	p.G11fs	BAX_uc002plf.1_Frame_Shift_Del_p.G11fs|BAX_uc002plg.1_5'UTR|BAX_uc002plh.1_5'UTR|BAX_uc010xzx.1_RNA|BAX_uc002plj.2_Frame_Shift_Del_p.G11fs|BAX_uc002pll.2_Frame_Shift_Del_p.G11fs|BAX_uc002plm.2_5'UTR	NM_138761	NP_620116	Q07812	BAX_HUMAN	BCL2-associated X protein isoform alpha	11			G -> E (in a plasmacytoma cell line).		activation of caspase activity by cytochrome c|activation of pro-apoptotic gene products|B cell apoptosis|cleavage of lamin|DNA fragmentation involved in apoptotic nuclear change|establishment or maintenance of transmembrane electrochemical gradient|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|induction of retinal programmed cell death|mitochondrial fragmentation involved in apoptosis|mitochondrial fusion|negative regulation of protein binding|negative regulation of survival gene product expression|nuclear fragmentation involved in apoptotic nuclear change|positive regulation of neuron apoptosis|protein homooligomerization|regulation of mitochondrial membrane potential|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|release of cytochrome c from mitochondria|release of matrix enzymes from mitochondria|response to toxin|transformed cell apoptosis	cytosol|endoplasmic reticulum membrane|mitochondrial outer membrane|mitochondrial permeability transition pore complex|nucleus	BH3 domain binding|channel activity|lipid binding|protein heterodimerization activity|protein homodimerization activity			lung(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000159)|all cancers(93;0.00047)|GBM - Glioblastoma multiforme(486;0.018)|Epithelial(262;0.0279)		gcccagaggcgggggtgaggc	0.259													2	4	---	---	---	---					
CASP8	841	broad.mit.edu	37	2	202136345	202136346	+	Splice_Site	INS	-	T	T			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr2:202136345_202136346insT	uc002uxr.1	+	4	620	c.411_splice	c.e4+1	p.M137_splice	CASP8_uc010ftc.1_Splice_Site_p.M137_splice|CASP8_uc002uxo.1_Splice_Site_p.M137_splice|CASP8_uc002uxp.1_Splice_Site_p.M169_splice|CASP8_uc002uxq.1_Splice_Site_p.M137_splice|CASP8_uc002uxs.1_Splice_Site_p.M137_splice|CASP8_uc002uxt.1_Splice_Site_p.M196_splice|CASP8_uc002uxu.1_Splice_Site|CASP8_uc010ftd.1_Splice_Site_p.M34_splice|CASP8_uc002uxv.1_Splice_Site_p.M137_splice|CASP8_uc002uxw.1_Splice_Site_p.M137_splice|CASP8_uc002uxy.1_Splice_Site_p.M137_splice|CASP8_uc002uxx.1_Splice_Site_p.M137_splice|CASP8_uc010ftf.2_Splice_Site_p.M137_splice|CASP8_uc010fte.1_Splice_Site_p.M34_splice	NM_033355	NP_203519	Q14790	CASP8_HUMAN	caspase 8 isoform B precursor						activation of caspase activity|activation of pro-apoptotic gene products|cellular component disassembly involved in apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis involved in cellular protein catabolic process|response to tumor necrosis factor	centrosome|cytosol|mitochondrial outer membrane	cysteine-type endopeptidase activity|protein binding|protein binding			upper_aerodigestive_tract(2)|ovary(1)|breast(1)|skin(1)	5						TGATGACATGGTAAGACCTGGT	0.416										HNSCC(4;0.00038)			16	24	---	---	---	---					
COL5A1	1289	broad.mit.edu	37	9	137709627	137709627	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D3-A2JC-06A-11D-A19A-08	TCGA-D3-A2JC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	40e1f15a-0457-40af-a91e-ca544e3dd668	3473ddb4-0619-40e4-a241-39b6608484b2	g.chr9:137709627delC	uc004cfe.2	+	54	4562	c.4180delC	c.(4180-4182)CCCfs	p.P1394fs		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1394	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CTTTCAGGGTCCCCCAGGCCC	0.652													2	4	---	---	---	---					
