Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KIAA1751	85452	broad.mit.edu	37	1	1890618	1890618	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:1890618A>T	uc001aim.1	-	16	1948	c.1792T>A	c.(1792-1794)TTT>ATT	p.F598I	KIAA1751_uc009vkz.1_Missense_Mutation_p.F598I	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	598										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		TGAGCCAAAAATGAGATATTT	0.368													17	74					0	0	0.000958276	0	0
RERE	473	broad.mit.edu	37	1	8418267	8418267	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:8418267G>A	uc001ape.2	-	21	5138	c.4328C>T	c.(4327-4329)CCC>CTC	p.P1443L	RERE_uc001apf.2_Missense_Mutation_p.P1443L|RERE_uc001apd.2_Missense_Mutation_p.P889L	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	1443	His-rich.				multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		Ttggtggagggggtcctgctg	0.433													4	25					0	0	0.00024832	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12835175	12835175	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:12835175G>A	uc001aui.2	+	1	192	c.165G>A	c.(163-165)ATG>ATA	p.M55I		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	55										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGACAACTATGGTGCAGGCCT	0.582													11	78					0	0	6.40141e-05	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12885041	12885041	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:12885041T>C	uc001auk.2	-	4	1266	c.1070A>G	c.(1069-1071)AAC>AGC	p.N357S		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	357	LRR 6.										0						GCTCAGCAGGTTCTCCAGGGT	0.542													78	125					0	0	0.000781405	0	0
LOC440563	440563	broad.mit.edu	37	1	13183335	13183335	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:13183335G>A	uc010obg.1	-	1	633	c.538C>T	c.(538-540)CTT>TTT	p.L180F		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	180						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						ATGGCCTGAAGGTCATCTCCT	0.453													17	354					0	0	0.00074312	0	0
CLCNKB	1188	broad.mit.edu	37	1	16378904	16378904	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:16378904C>T	uc001axw.3	+	15	1700	c.1620C>T	c.(1618-1620)ATC>ATT	p.I540I	FAM131C_uc010obz.1_Intron|CLCNKB_uc001axx.3_Silent_p.I540I|CLCNKB_uc001axy.3_Silent_p.I371I	NM_000085	NP_000076	P51801	CLCKB_HUMAN	chloride channel Kb isoform 1	540					excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			skin(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		GCCGCAACATCGGGTGAGTGG	0.582													13	57					0	0	0.000422831	0	0
NBPF1	55672	broad.mit.edu	37	1	16907242	16907243	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:16907242_16907243GG>TT	uc009vos.1	-	16	2476_2477	c.1588_1589CC>AA	c.(1588-1590)CCA>AAA	p.P530K	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Missense_Mutation_p.P259K	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	530	NBPF 2.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GAGGCTACCTGGGAGAATGTTT	0.421													16	599					0	0	6.4e-05	0	0
NBPF1	55672	broad.mit.edu	37	1	16914223	16914224	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:16914223_16914224GG>TT	uc009vos.1	-	10	1450_1451	c.562_563CC>AA	c.(562-564)CCC>AAC	p.P188N	NBPF1_uc009vot.1_5'Flank|NBPF1_uc001ayz.1_5'Flank|NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	188	NBPF 1.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GTGTTACCTGGGGGCAGATGAT	0.441													13	541					0	0	6.4e-05	0	0
ESPNP	284729	broad.mit.edu	37	1	17029294	17029294	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:17029294G>A	uc001azn.1	-	6	1072	c.958C>T	c.(958-960)CCA>TCA	p.P320S		NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						TTGGGAGATGGGTAGCTAggt	0.353													6	47					0	0	8.12818e-05	0	0
EPHA8	2046	broad.mit.edu	37	1	22903359	22903359	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:22903359G>A	uc001bfx.1	+	3	934	c.809G>A	c.(808-810)CGG>CAG	p.R270Q	EPHA8_uc001bfw.2_Missense_Mutation_p.R270Q	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	270	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GAGGAGCGGCGGGATGCCTGT	0.677													7	28					0	0	0.000157383	0	0
ZNF683	257101	broad.mit.edu	37	1	26691131	26691131	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:26691131G>A	uc001bmg.1	-	4	1024	c.906C>T	c.(904-906)TCC>TCT	p.S302S	ZNF683_uc001bmh.1_Silent_p.S302S|ZNF683_uc009vsj.1_Silent_p.S302S	NM_173574	NP_775845	Q8IZ20	ZN683_HUMAN	zinc finger protein 683	302					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(24;2.39e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.76e-26)|Colorectal(126;1.38e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00793)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.159)|LUSC - Lung squamous cell carcinoma(448;0.233)		TGCCTGTCTGGGAACTCAATG	0.587													64	141					0	0	0.000781405	0	0
RPS6KA1	6195	broad.mit.edu	37	1	26881656	26881656	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:26881656G>A	uc001bmr.1	+	10	934	c.771G>A	c.(769-771)ACG>ACA	p.T257T	RPS6KA1_uc010ofe.1_Silent_p.T165T|RPS6KA1_uc010off.1_Silent_p.T241T|RPS6KA1_uc001bms.1_Silent_p.T266T|RPS6KA1_uc009vsl.1_Silent_p.T100T	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	257	Protein kinase 1.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		AGATGCTGACGGGCTCCCTGC	0.592													6	51					0	0	8.12818e-05	0	0
ARID1A	8289	broad.mit.edu	37	1	27088683	27088683	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:27088683C>T	uc001bmv.1	+	7	2665	c.2292C>T	c.(2290-2292)TCC>TCT	p.S764S	ARID1A_uc001bmt.1_Silent_p.S764S|ARID1A_uc001bmu.1_Silent_p.S764S|ARID1A_uc001bmw.1_Silent_p.S381S	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	764					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		AGTACAGTTCCCCCCAGCCCG	0.527			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								34	79					0	0	0.000191422	0	0
OSCP1	127700	broad.mit.edu	37	1	36887763	36887763	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:36887763G>A	uc001cap.2	-	8	919	c.837C>T	c.(835-837)GCC>GCT	p.A279A	OSCP1_uc001caq.2_Silent_p.A269A	NM_145047	NP_659484	Q8WVF1	OSCP1_HUMAN	oxidored-nitro domain-containing protein isoform	279					transport	basal plasma membrane				ovary(2)|central_nervous_system(1)|pancreas(1)	4						GGGTCCATGAGGCTAAGTTCT	0.473													14	80					0	0	0.000308642	0	0
GRIK3	2899	broad.mit.edu	37	1	37270629	37270629	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:37270629C>T	uc001caz.2	-	15	2659	c.2524G>A	c.(2524-2526)GAG>AAG	p.E842K	GRIK3_uc001cba.1_Missense_Mutation_p.E842K	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	842	Cytoplasmic (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	TACACAAACTCGCCCACGGCC	0.572													10	61					0	0	0.000442599	0	0
HIVEP3	59269	broad.mit.edu	37	1	42049157	42049157	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:42049157G>T	uc001cgz.3	-	4	2525	c.1312C>A	c.(1312-1314)CAG>AAG	p.Q438K	HIVEP3_uc001cha.3_Missense_Mutation_p.Q438K|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	438	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				AGGAGGGGCTGGGTGGAGGTG	0.607													11	59					4.36969e-10	4.73472e-09	0.000151284	1	0
HIVEP3	59269	broad.mit.edu	37	1	42050328	42050328	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:42050328C>T	uc001cgz.3	-	4	1354	c.141G>A	c.(139-141)GAG>GAA	p.E47E	HIVEP3_uc001cha.3_Silent_p.E47E|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	47					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GGGCGGGGCTCTCTTGGGTGG	0.632													46	139					0	0	0.000781405	0	0
PTPRF	5792	broad.mit.edu	37	1	44085235	44085235	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:44085235C>T	uc001cjr.2	+	28	5263	c.4923C>T	c.(4921-4923)CTC>CTT	p.L1641L	PTPRF_uc001cjs.2_Silent_p.L1632L|PTPRF_uc001cju.2_Silent_p.L1030L|PTPRF_uc009vwt.2_Silent_p.L1201L|PTPRF_uc001cjv.2_Silent_p.L1112L|PTPRF_uc001cjw.2_Silent_p.L867L	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1641	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CCATGGAGCTCGAGTTCAAGG	0.652													15	49					0	0	0.000229342	0	0
PTCH2	8643	broad.mit.edu	37	1	45295698	45295698	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:45295698G>A	uc010olf.1	-	7	830	c.818C>T	c.(817-819)CCC>CTC	p.P273L	PTCH2_uc010olg.1_5'UTR	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	273	Extracellular (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					AGCCACATTGGGAGCCTGGAG	0.607									Basal_Cell_Nevus_syndrome				42	46					0	0	0.000781405	0	0
FAM151A	338094	broad.mit.edu	37	1	55075104	55075104	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:55075104G>A	uc001cxn.2	-	8	1727	c.1595C>T	c.(1594-1596)TCC>TTC	p.S532F	ACOT11_uc001cxj.1_3'UTR|ACOT11_uc001cxl.1_3'UTR|ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	532						integral to membrane					0						GGCCCGGGGGGAGGATGCCAG	0.647													21	70					0	0	0.000229342	0	0
BSND	7809	broad.mit.edu	37	1	55464879	55464880	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:55464879_55464880TC>GT	uc001cye.2	+	1	263_264	c.20_21TC>GT	c.(19-21)TTC>TGT	p.F7C		NM_057176	NP_476517	Q8WZ55	BSND_HUMAN	barttin	7	Helical; (Potential).					basolateral plasma membrane|cytoplasm|integral to plasma membrane|protein complex				ovary(1)|skin(1)	2						GAGAAGACCTTCCGGATCGGCT	0.614													37	92					0	0	6.4e-05	0	0
GBP6	163351	broad.mit.edu	37	1	89844124	89844124	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:89844124C>T	uc001dnf.2	+	5	851	c.577C>T	c.(577-579)CCT>TCT	p.P193S	GBP6_uc010ost.1_Missense_Mutation_p.P63S	NM_198460	NP_940862	Q6ZN66	GBP6_HUMAN	guanylate binding protein family, member 6	193							GTP binding|GTPase activity			ovary(2)	2		Lung NSC(277;0.0908)		all cancers(265;0.0108)|Epithelial(280;0.0398)		GAACGGTCACCCTATCACAGA	0.488													4	29					0	0	0.000602214	0	0
CDC7	8317	broad.mit.edu	37	1	91985787	91985787	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:91985787T>G	uc001doe.2	+	11	1446	c.1281T>G	c.(1279-1281)ATT>ATG	p.I427M	CDC7_uc001dof.2_Missense_Mutation_p.I427M|CDC7_uc010osw.1_Missense_Mutation_p.I399M|CDC7_uc009wdc.2_Missense_Mutation_p.I427M|CDC7_uc009wdd.2_Intron	NM_003503	NP_003494	O00311	CDC7_HUMAN	cell division cycle 7	427	Protein kinase.				cell cycle checkpoint|cell division|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|positive regulation of cell proliferation|regulation of S phase	cytoplasm|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	5		all_lung(203;0.0165)|Lung NSC(277;0.0562)		all cancers(265;0.00108)|Epithelial(280;0.0184)|KIRC - Kidney renal clear cell carcinoma(1967;0.124)		TGGCCCAAATTATGACAATTA	0.358													5	19					0	0	0.000602214	0	0
ABCA4	24	broad.mit.edu	37	1	94506906	94506906	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:94506906C>T	uc001dqh.2	-	23	3485	c.3381G>A	c.(3379-3381)GGG>GGA	p.G1127G		NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1127	Cytoplasmic.|ABC transporter 1.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		CAATGCGGTCCCCAAGGAGGT	0.592													10	39					0	0	0.000673444	0	0
COL11A1	1301	broad.mit.edu	37	1	103428302	103428302	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:103428302C>T	uc001dul.2	-	39	3249	c.2931G>A	c.(2929-2931)GAG>GAA	p.E977E	COL11A1_uc001duk.2_Silent_p.E173E|COL11A1_uc001dum.2_Silent_p.E989E|COL11A1_uc001dun.2_Silent_p.E938E|COL11A1_uc009weh.2_Silent_p.E861E	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	977	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TTGGACCAGTCTCACCGGTTG	0.443													9	23					0	0	0.000673444	0	0
AMY2B	280	broad.mit.edu	37	1	104115776	104115776	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:104115776C>T	uc001duq.2	+	5	1023	c.407C>T	c.(406-408)CCT>CTT	p.P136L	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Missense_Mutation_p.P136L|AMY2B_uc001dus.1_5'Flank	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	136					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		TACTTCAACCCTGGAAGTAGG	0.408													45	108					0	0	0.000781405	0	0
FAM40A	85369	broad.mit.edu	37	1	110584400	110584401	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:110584400_110584401GG>TT	uc001dza.1	+	8	821_822	c.802_803GG>TT	c.(802-804)GGG>TTG	p.G268L	FAM40A_uc001dyz.1_Missense_Mutation_p.G173L|FAM40A_uc009wfp.1_Missense_Mutation_p.G92L	NM_033088	NP_149079	Q5VSL9	FA40A_HUMAN	hypothetical protein LOC85369	268						nucleus	protein binding			ovary(3)|large_intestine(1)	4		all_cancers(81;8.51e-05)|all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0154)|all cancers(265;0.0732)|Epithelial(280;0.0781)|Colorectal(144;0.115)|LUSC - Lung squamous cell carcinoma(189;0.137)		CATGCTGTTTGGGATGGTGACC	0.525													8	208					0	0	6.4e-05	0	0
MOV10	4343	broad.mit.edu	37	1	113238833	113238833	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:113238833G>A	uc001eck.2	+	12	2113	c.1843G>A	c.(1843-1845)GAA>AAA	p.E615K	MOV10_uc001ecl.2_Intron|MOV10_uc001ecn.2_Missense_Mutation_p.E615K|MOV10_uc001ecm.2_Missense_Mutation_p.E555K|MOV10_uc009wgj.1_Missense_Mutation_p.E555K	NM_001130079	NP_001123551	Q9HCE1	MOV10_HUMAN	Mov10, Moloney leukemia virus 10, homolog	615					mRNA cleavage involved in gene silencing by miRNA|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body	ATP binding|helicase activity|protein binding|RNA binding			ovary(4)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;3.31e-11)|all_epithelial(167;5.69e-10)|all_lung(203;3.73e-05)|Breast(1374;0.000525)|Lung NSC(69;0.000954)|Ovarian(761;0.0367)|Lung SC(238;0.114)		OV - Ovarian serous cystadenocarcinoma(397;3.99e-67)|all cancers(265;1e-62)|Epithelial(280;4.78e-61)|Lung(183;0.0234)|Colorectal(144;0.0686)|READ - Rectum adenocarcinoma(129;0.0929)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|BRCA - Breast invasive adenocarcinoma(282;0.24)		GAAGCTGCAGGAATACCGGGT	0.537													33	33					0	0	0.000319135	0	0
CD2	914	broad.mit.edu	37	1	117307203	117307203	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:117307203G>A	uc001egu.3	+	4	740	c.711G>A	c.(709-711)AGG>AGA	p.R237R	CD2_uc010owz.1_Silent_p.R237R|CD2_uc010oxa.1_3'UTR	NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	237	Cytoplasmic (Potential).				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	TCACCAAAAGGAAAAAACAGA	0.493													25	58					0	0	0.00047179	0	0
PHGDH	26227	broad.mit.edu	37	1	120269702	120269703	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:120269702_120269703CG>AT	uc001ehz.2	+	5	714_715	c.487_488CG>AT	c.(487-489)CGG>ATG	p.R163M	PHGDH_uc009whl.2_Missense_Mutation_p.R65M|PHGDH_uc009whm.2_Missense_Mutation_p.R61M|PHGDH_uc001eia.2_Missense_Mutation_p.R163M|PHGDH_uc009whn.2_Missense_Mutation_p.R163M|PHGDH_uc001eib.2_Missense_Mutation_p.R129M	NM_006623	NP_006614	O43175	SERA_HUMAN	phosphoglycerate dehydrogenase	163					brain development|L-serine biosynthetic process		electron carrier activity|NAD binding|phosphoglycerate dehydrogenase activity			ovary(1)	1	all_cancers(5;1.18e-09)|all_epithelial(5;2.16e-10)|Melanoma(3;1.93e-05)|all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0347)		Lung(183;0.0111)|LUSC - Lung squamous cell carcinoma(189;0.0593)	NADH(DB00157)	GGTAGCTACCCGGATGCAGTCC	0.515													11	498					0	0	6.4e-05	0	0
PHGDH	26227	broad.mit.edu	37	1	120277263	120277264	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:120277263_120277264GG>TT	uc001ehz.2	+	6	744_745	c.517_518GG>TT	c.(517-519)GGG>TTG	p.G173L	PHGDH_uc009whl.2_Missense_Mutation_p.G75L|PHGDH_uc009whm.2_Missense_Mutation_p.G71L|PHGDH_uc001eia.2_Missense_Mutation_p.G173L|PHGDH_uc009whn.2_Missense_Mutation_p.G173L|PHGDH_uc001eib.2_Missense_Mutation_p.G139L	NM_006623	NP_006614	O43175	SERA_HUMAN	phosphoglycerate dehydrogenase	173					brain development|L-serine biosynthetic process		electron carrier activity|NAD binding|phosphoglycerate dehydrogenase activity			ovary(1)	1	all_cancers(5;1.18e-09)|all_epithelial(5;2.16e-10)|Melanoma(3;1.93e-05)|all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0347)		Lung(183;0.0111)|LUSC - Lung squamous cell carcinoma(189;0.0593)	NADH(DB00157)	CCAGACTATAGGGTATGACCCC	0.446													13	479					0	0	6.4e-05	0	0
PRKAB2	5565	broad.mit.edu	37	1	146639510	146639510	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:146639510G>A	uc001epe.2	-	3	304	c.159C>T	c.(157-159)CTC>CTT	p.L53L	PRKAB2_uc010ozm.1_Intron|PRKAB2_uc010ozn.1_Intron|PRKAB2_uc009wjf.1_Silent_p.L53L	NM_005399	NP_005390	O43741	AAKB2_HUMAN	AMP-activated protein kinase beta 2	53					carnitine shuttle|cell cycle arrest|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm				lung(2)|skin(1)	3	all_hematologic(923;0.0487)				Adenosine monophosphate(DB00131)	TGTCCCCAGGGAGCTGTAAGA	0.512													35	133					0	0	0.000692331	0	0
KCNN3	3782	broad.mit.edu	37	1	154744469	154744469	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:154744469G>A	uc001ffp.2	-	3	1744	c.1430C>T	c.(1429-1431)ACC>ATC	p.T477I	KCNN3_uc001ffo.2_Missense_Mutation_p.T172I|KCNN3_uc009wox.1_Missense_Mutation_p.T477I	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	482						integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			GACACGGACGGTCCAGGCAGC	0.522													8	79					0	0	0.000673444	0	0
PBXIP1	57326	broad.mit.edu	37	1	154923827	154923827	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:154923827C>T	uc001ffr.2	-	5	349	c.290G>A	c.(289-291)GGA>GAA	p.G97E	PBXIP1_uc001ffs.2_Missense_Mutation_p.G68E|PBXIP1_uc010pep.1_Intron|PBXIP1_uc009woy.1_RNA	NM_020524	NP_065385	Q96AQ6	PBIP1_HUMAN	pre-B-cell leukemia homeobox interacting protein	97					cell differentiation|multicellular organismal development|negative regulation of transcription, DNA-dependent	cytosol|microtubule|nucleus	protein binding|transcription corepressor activity			large_intestine(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TACTGTGTCTCCTGGGCCAGG	0.627													32	34					0	0	0.000409698	0	0
ZBTB7B	51043	broad.mit.edu	37	1	154988032	154988033	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:154988032_154988033CC>TT	uc001fgk.3	+	3	1054_1055	c.896_897CC>TT	c.(895-897)TCC>TTT	p.S299F	ZBTB7B_uc009wpa.2_Missense_Mutation_p.S299F|ZBTB7B_uc001fgj.3_Missense_Mutation_p.S333F|ZBTB7B_uc010peq.1_Missense_Mutation_p.S333F|ZBTB7B_uc001fgl.3_Missense_Mutation_p.S299F	NM_015872	NP_056956	O15156	ZBT7B_HUMAN	zinc finger and BTB domain containing 7B	299					cell differentiation|ectoderm development|multicellular organismal development|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			CCCCCGCTGTCCCCAGAGGAGC	0.634													5	47					0	0	6.4e-05	0	0
ADAM15	8751	broad.mit.edu	37	1	155026956	155026956	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:155026956C>T	uc001fgr.1	+	6	687	c.586C>T	c.(586-588)CCC>TCC	p.P196S	ADAM15_uc001fgq.1_5'UTR|ADAM15_uc009wpc.1_RNA|ADAM15_uc010pet.1_Missense_Mutation_p.P180S|ADAM15_uc010peu.1_Missense_Mutation_p.P213S|ADAM15_uc001fgt.1_Missense_Mutation_p.P196S|ADAM15_uc010pev.1_Missense_Mutation_p.P206S|ADAM15_uc001fgs.1_Missense_Mutation_p.P196S|ADAM15_uc001fgu.1_Missense_Mutation_p.P196S|ADAM15_uc001fgw.1_Missense_Mutation_p.P196S|ADAM15_uc001fgv.1_Missense_Mutation_p.P196S|ADAM15_uc001fgx.1_Missense_Mutation_p.P196S|ADAM15_uc001fgz.1_RNA|ADAM15_uc001fgy.1_RNA|ADAM15_uc001fha.1_RNA	NM_207197	NP_997080	Q13444	ADA15_HUMAN	a disintegrin and metalloproteinase domain 15	196					angiogenesis|cell-matrix adhesion|collagen catabolic process|proteolysis	acrosomal vesicle|adherens junction|endomembrane system|flagellum|integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			central_nervous_system(3)|skin(2)|ovary(1)	6	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			ACCAGAGCACCCCCTGGGACA	0.587													9	98					0	0	0.00010058	0	0
THBS3	7059	broad.mit.edu	37	1	155169793	155169793	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:155169793G>A	uc001fix.2	-	15	1843	c.1820C>T	c.(1819-1821)CCT>CTT	p.P607L	RAG1AP1_uc010pey.1_Intron|THBS3_uc009wqi.2_Missense_Mutation_p.P598L|THBS3_uc001fiz.2_Missense_Mutation_p.P570L|THBS3_uc001fiy.2_Missense_Mutation_p.P136L|THBS3_uc010pfu.1_Missense_Mutation_p.P487L|THBS3_uc010pfv.1_RNA	NM_007112	NP_009043	P49746	TSP3_HUMAN	thrombospondin 3 precursor	607	TSP type-3 5.				cell-matrix adhesion	extracellular region|perinuclear region of cytoplasm	calcium ion binding|heparin binding|structural molecule activity			breast(3)|ovary(2)	5	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			TACCTGGGTAGGATTGCTCAT	0.552													13	115					0	0	0.000219431	0	0
CD1B	910	broad.mit.edu	37	1	158300648	158300649	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:158300648_158300649CG>AT	uc001frx.2	-	2	373_374	c.265_266CG>AT	c.(265-267)CGA>ATA	p.R89I	CD1B_uc001frw.2_5'UTR|CD1B_uc010pic.1_Missense_Mutation_p.R89I	NM_001764	NP_001755	P29016	CD1B_HUMAN	CD1B antigen precursor	89	Extracellular (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to membrane|lysosomal membrane|plasma membrane	protein binding			ovary(2)	2	all_hematologic(112;0.0378)					GATGTAGACTCGGAATATCTCC	0.465													8	363					0	0	6.4e-05	0	0
CD1E	913	broad.mit.edu	37	1	158325810	158325810	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:158325810G>A	uc001fse.2	+	4	1058	c.819G>A	c.(817-819)CTG>CTA	p.L273L	CD1E_uc010pid.1_Silent_p.L271L|CD1E_uc010pie.1_Silent_p.L174L|CD1E_uc010pif.1_Silent_p.L84L|CD1E_uc001fsd.2_Intron|CD1E_uc001fsk.2_Silent_p.L183L|CD1E_uc001fsj.2_Intron|CD1E_uc001fsc.2_Silent_p.L84L|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Silent_p.L273L|CD1E_uc001fry.2_Intron|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Silent_p.L84L|CD1E_uc001fsi.2_Intron|CD1E_uc009wsv.2_Silent_p.L174L|CD1E_uc001frz.2_Silent_p.L183L|CD1E_uc009wsw.2_Silent_p.L31L	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	273	Ig-like.				antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					GAGCAACCCTGGATGTGGCGG	0.602													7	129					0	0	0.000274275	0	0
SPTA1	6708	broad.mit.edu	37	1	158615155	158615155	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:158615155C>T	uc001fst.1	-	29	4216	c.4017G>A	c.(4015-4017)GAG>GAA	p.E1339E		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1339	Spectrin 13.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GAGCCTCTGCCTCCATGTCAG	0.483													6	22					0	0	8.12818e-05	0	0
OR6K6	128371	broad.mit.edu	37	1	158724725	158724725	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:158724725C>T	uc001fsw.1	+	1	120	c.120C>T	c.(118-120)TTC>TTT	p.F40F		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	40	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					TGACTGAGTTCCTCTTCTCTA	0.428													11	86					0	0	6.40141e-05	0	0
FCRL6	343413	broad.mit.edu	37	1	159778212	159778212	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:159778212G>A	uc001fud.3	+	3	339	c.297G>A	c.(295-297)GAG>GAA	p.E99E	FCRL6_uc010pix.1_Silent_p.E94E|FCRL6_uc001fuc.2_Silent_p.E106E|FCRL6_uc009wsz.1_Silent_p.E99E|FCRL6_uc009wta.2_Silent_p.E99E	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	99	Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					AAACTTCAGAGACTGCCATGG	0.542													12	59					0	0	0.00010058	0	0
SLAMF8	56833	broad.mit.edu	37	1	159802889	159802889	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:159802889G>A	uc001fue.3	+	3	801	c.591G>A	c.(589-591)GTG>GTA	p.V197V		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	197	Ig-like C2-type.|Extracellular (Potential).					integral to membrane					0	all_hematologic(112;0.0597)					ACAGAGATGTGGCCTATTCCT	0.567													7	66					0	0	0.000157383	0	0
COPA	1314	broad.mit.edu	37	1	160275485	160275485	+	Silent	SNP	G	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:160275485G>C	uc009wti.2	-	16	1915	c.1521C>G	c.(1519-1521)GCC>GCG	p.A507A	COPA_uc001fvv.3_Silent_p.A507A|COPA_uc009wtj.1_Silent_p.A453A	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	507					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CACCGTGTTTGGCTAGTAGTG	0.458													20	106					0	0	0.000375601	0	0
SLAMF6	114836	broad.mit.edu	37	1	160460440	160460440	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:160460440G>A	uc001fwe.1	-	4	742	c.682C>T	c.(682-684)CTG>TTG	p.L228L	SLAMF6_uc001fwd.1_Silent_p.L228L|SLAMF6_uc010pjh.1_Silent_p.L179L|SLAMF6_uc010pji.1_Silent_p.L117L|SLAMF6_uc010pjj.1_Silent_p.L117L|SLAMF6_uc009wtm.1_3'UTR	NM_052931	NP_443163	Q96DU3	SLAF6_HUMAN	activating NK receptor precursor	228	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	all_cancers(52;1.05e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0923)			ACCATAAACAGAATCATTTTG	0.368													5	34					0	0	3.59834e-05	0	0
SLAMF7	57823	broad.mit.edu	37	1	160719702	160719702	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:160719702G>A	uc001fwq.2	+	3	483	c.468G>A	c.(466-468)GGG>GGA	p.G156G	SLAMF7_uc010pjn.1_Silent_p.G49G|SLAMF7_uc001fws.2_Silent_p.G49G|SLAMF7_uc001fwr.2_Silent_p.G156G|SLAMF7_uc010pjo.1_Intron|SLAMF7_uc010pjp.1_Silent_p.G49G|SLAMF7_uc010pjq.1_Intron|SLAMF7_uc010pjr.1_Silent_p.G49G	NM_021181	NP_067004	Q9NQ25	SLAF7_HUMAN	SLAM family member 7	156	Ig-like C2-type.|Extracellular (Potential).				cell adhesion|natural killer cell activation|natural killer cell mediated cytotoxicity	integral to membrane	receptor activity			skin(2)|ovary(1)	3	all_cancers(52;2.63e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			TGGAACATGGGGAAGAGGATG	0.522													9	63					0	0	0.000442599	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161022462	161022462	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:161022462G>A	uc001fxl.2	-	7	1136	c.790C>T	c.(790-792)CCA>TCA	p.P264S	ARHGAP30_uc001fxk.2_Missense_Mutation_p.P264S|ARHGAP30_uc001fxm.2_Missense_Mutation_p.P110S|ARHGAP30_uc009wtx.2_5'UTR|ARHGAP30_uc001fxn.1_Missense_Mutation_p.P110S	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	264					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			CGCATCTGTGGGGGTCCATCG	0.602													19	49					0	0	0.00074312	0	0
LMX1A	4009	broad.mit.edu	37	1	165183036	165183036	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:165183036C>T	uc001gcy.1	-	4	732	c.511G>A	c.(511-513)GAA>AAA	p.E171K	LMX1A_uc001gcz.1_Missense_Mutation_p.E171K|LMX1A_uc001gcw.1_5'Flank|LMX1A_uc001gcx.1_5'Flank	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	171						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					AGACTTTCTTCATCATCACTT	0.498													7	125					0	0	0.000157383	0	0
DUSP27	92235	broad.mit.edu	37	1	167096537	167096537	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:167096537C>T	uc001geb.1	+	5	2169	c.2169C>T	c.(2167-2169)ATC>ATT	p.I723I		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	723					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						TTGCCAGTATCCAGAACTGGA	0.542													30	65					0	0	0.00058488	0	0
F5	2153	broad.mit.edu	37	1	169505778	169505778	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:169505778G>A	uc001ggg.1	-	14	5082	c.4937C>T	c.(4936-4938)CCT>CTT	p.P1646L		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1646	F5/8 type A 3.|Plastocyanin-like 5.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TCTGATAATAGGACCAAGAAT	0.428													4	23					0	0	0.000602214	0	0
FMO2	2327	broad.mit.edu	37	1	171154965	171154965	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:171154965G>A	uc001ghk.1	+	2	230	c.113G>A	c.(112-114)GGA>GAA	p.G38E	FMO2_uc010pmd.1_Intron	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	38					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GAAGATATTGGAGGAGTGTGG	0.453													5	35					0	0	3.59834e-05	0	0
PAPPA2	60676	broad.mit.edu	37	1	176734808	176734808	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:176734808C>T	uc001gkz.2	+	15	5322	c.4158C>T	c.(4156-4158)ATC>ATT	p.I1386I	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1386					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CCAGCTGTATCCATCGGCCCT	0.507													38	47					0	0	0.000374591	0	0
CACNA1E	777	broad.mit.edu	37	1	181741255	181741255	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:181741255A>C	uc001gow.2	+	37	5192	c.5027A>C	c.(5026-5028)AAG>ACG	p.K1676T	CACNA1E_uc009wxs.2_Missense_Mutation_p.K1564T|CACNA1E_uc001gox.1_Missense_Mutation_p.K902T|CACNA1E_uc009wxt.2_Missense_Mutation_p.K902T	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1676	Extracellular (Potential).|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CTTGGGGAGAAGGGCTGTGAG	0.567													12	80					0	0	0.000151284	0	0
CACNA1E	777	broad.mit.edu	37	1	181765861	181765861	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:181765861G>A	uc001gow.2	+	46	6302	c.6137G>A	c.(6136-6138)CGA>CAA	p.R2046Q	CACNA1E_uc009wxs.2_Missense_Mutation_p.R1934Q|CACNA1E_uc009wxt.2_Missense_Mutation_p.R1315Q	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2089	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TCAAAAGAGCGAAAGCATCTT	0.572													19	33					0	0	0.000229342	0	0
HMCN1	83872	broad.mit.edu	37	1	185963949	185963949	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:185963949C>T	uc001grq.1	+	24	3737	c.3508C>T	c.(3508-3510)CCT>TCT	p.P1170S		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1170					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						ATTTCTAGTTCCTCCAAAGAT	0.393													5	11					0	0	0.000602214	0	0
FAM5C	339479	broad.mit.edu	37	1	190067904	190067904	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:190067904G>A	uc001gse.1	-	8	1777	c.1545C>T	c.(1543-1545)ATC>ATT	p.I515I	FAM5C_uc010pot.1_Silent_p.I413I	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	515						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					TGTCATTGCTGATAAAAATGG	0.453													59	117					0	0	0.000781405	0	0
CFHR5	81494	broad.mit.edu	37	1	196953100	196953100	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:196953100C>T	uc001gts.3	+	3	391	c.263C>T	c.(262-264)TCC>TTC	p.S88F		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	88	Sushi 2.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						GGAATGTGTTCCTTTCCTTTT	0.308													4	9					0	0	0.00024832	0	0
C1orf106	55765	broad.mit.edu	37	1	200877908	200877908	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:200877908C>T	uc001gvo.2	+	7	910	c.880C>T	c.(880-882)CGG>TGG	p.R294W	C1orf106_uc010ppm.1_Missense_Mutation_p.R209W	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	294	Pro-rich.									skin(2)|ovary(1)	3						CCCACCTTCTCGGCCTCTCCC	0.612													14	223					0	0	0.000566183	0	0
RNPEP	6051	broad.mit.edu	37	1	201970810	201970810	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:201970810C>T	uc001gxd.2	+	8	1370	c.1341C>T	c.(1339-1341)TTC>TTT	p.F447F	RNPEP_uc001gxe.2_Silent_p.F148F|RNPEP_uc001gxf.2_Silent_p.F316F	NM_020216	NP_064601	Q9H4A4	AMPB_HUMAN	arginyl aminopeptidase	447					leukotriene biosynthetic process		epoxide hydrolase activity|zinc ion binding			upper_aerodigestive_tract(1)	1				KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|Colorectal(1306;0.005)		AATTCAAATTCCGAAGCATCT	0.493													54	244					0	0	0.000781405	0	0
PPFIA4	8497	broad.mit.edu	37	1	203015102	203015102	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:203015102C>T	uc009xaj.2	+	12	1433	c.1433C>T	c.(1432-1434)TCC>TTC	p.S478F	PPFIA4_uc010pqf.1_Missense_Mutation_p.S38F			O75335	LIPA4_HUMAN	SubName: Full=Liprin alpha4;	259					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						AACAAGGAGTCCCTGCACCGC	0.577													42	210					0	0	0.000781405	0	0
CR1L	1379	broad.mit.edu	37	1	207851566	207851566	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:207851566G>A	uc001hga.3	+	3	422	c.301G>A	c.(301-303)GAT>AAT	p.D101N	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	101	Sushi 2.					cytoplasm|extracellular region|membrane					0						TAATCCTCCAGATCCTGTGAA	0.383													6	51					0	0	0.000157383	0	0
KCNH1	3756	broad.mit.edu	37	1	210857430	210857430	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:210857430C>T	uc001hib.2	-	11	2333	c.2163G>A	c.(2161-2163)ATG>ATA	p.M721I	KCNH1_uc001hic.2_Missense_Mutation_p.M694I	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	721	Cytoplasmic (Potential).|Calmodulin-binding.				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		TCTTTCGTTTCATGCGTTCTT	0.562													20	91					0	0	0.000175454	0	0
USH2A	7399	broad.mit.edu	37	1	215956161	215956161	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:215956161C>G	uc001hku.1	-	53	10891	c.10504G>C	c.(10504-10506)GTG>CTG	p.V3502L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3502	Extracellular (Potential).|Fibronectin type-III 20.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GGGGGACTCACTCCTTGAGGC	0.418										HNSCC(13;0.011)			3	19					0	0	6.4e-05	0	0
DISP1	84976	broad.mit.edu	37	1	223176933	223176934	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:223176933_223176934GG>TT	uc001hnu.1	+	8	2341_2342	c.2194_2195GG>TT	c.(2194-2196)GGG>TTG	p.G732L		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	732	Helical; (Potential).				diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		AACTGTAGGTGGGGCCTACATT	0.426													16	693					0	0	6.4e-05	0	0
CNIH3	149111	broad.mit.edu	37	1	224868708	224868708	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:224868708C>T	uc001hos.1	+	2	828	c.130C>T	c.(130-132)CAG>TAG	p.Q44*		NM_152495	NP_689708	Q8TBE1	CNIH3_HUMAN	cornichon homolog 3	44	Lumenal (Potential).				intracellular signal transduction|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic shaft|postsynaptic membrane					0	Breast(184;0.218)			GBM - Glioblastoma multiforme(131;0.073)		CCCCATAGACCAGTGCAATCC	0.498													21	111					0	0	0.000279167	0	0
TARBP1	6894	broad.mit.edu	37	1	234541794	234541794	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:234541794G>A	uc001hwd.2	-	24	3844	c.3844C>T	c.(3844-3846)CAC>TAC	p.H1282Y		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	1282					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			CTAAAATTGTGATTGAAACAC	0.378													28	76					0	0	0.000491102	0	0
ZP4	57829	broad.mit.edu	37	1	238050772	238050772	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:238050772A>C	uc001hym.2	-	5	643	c.643T>G	c.(643-645)TTG>GTG	p.L215V	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	215	ZP.|Extracellular (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			CTAAGGGCCAAGCGCACAGAA	0.507													15	123					0	0	0.000308642	0	0
NLRP3	114548	broad.mit.edu	37	1	247587448	247587448	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:247587448C>T	uc001icr.2	+	5	841	c.703C>T	c.(703-705)CTG>TTG	p.L235L	NLRP3_uc001ics.2_Silent_p.L235L|NLRP3_uc001icu.2_Silent_p.L235L|NLRP3_uc001icw.2_Silent_p.L235L|NLRP3_uc001icv.2_Silent_p.L235L|NLRP3_uc010pyw.1_Silent_p.L233L|NLRP3_uc001ict.1_Silent_p.L233L	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	235	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			GAAAACAATCCTGGCCAGGAA	0.532													10	56					0	0	0.000442599	0	0
NLRP3	114548	broad.mit.edu	37	1	247587649	247587649	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:247587649G>A	uc001icr.2	+	5	1042	c.904G>A	c.(904-906)GAC>AAC	p.D302N	NLRP3_uc001ics.2_Missense_Mutation_p.D302N|NLRP3_uc001icu.2_Missense_Mutation_p.D302N|NLRP3_uc001icw.2_Missense_Mutation_p.D302N|NLRP3_uc001icv.2_Missense_Mutation_p.D302N|NLRP3_uc010pyw.1_Missense_Mutation_p.D300N|NLRP3_uc001ict.1_Missense_Mutation_p.D300N	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	302	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CTTCCTCATGGACGGCTTCGA	0.587													18	83					0	0	0.000175454	0	0
OR2C3	81472	broad.mit.edu	37	1	247695301	247695301	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:247695301C>T	uc009xgy.2	-	2	875	c.513G>A	c.(511-513)GGG>GGA	p.G171G	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			TGCAATTGTTCCCACACAGCG	0.562													9	26					0	0	0.000442599	0	0
OR2T12	127064	broad.mit.edu	37	1	248458452	248458452	+	Silent	SNP	G	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:248458452G>T	uc010pzj.1	-	1	429	c.429C>A	c.(427-429)ACC>ACA	p.T143T		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	143	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			AGGACGACATGGTCATCCTCA	0.587													13	42					1.5739e-10	1.70837e-09	0.000422831	1	0
NEBL	10529	broad.mit.edu	37	10	21074740	21074740	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr10:21074740C>T	uc001iqi.2	-	28	3378	c.2981G>A	c.(2980-2982)GGC>GAC	p.G994D	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Missense_Mutation_p.G250D	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	994	SH3.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CTGCACTGTGCCGTACATCCA	0.468													4	13					0	0	0.00024832	0	0
KIAA1462	57608	broad.mit.edu	37	10	30336468	30336468	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr10:30336468C>T	uc001iux.2	-	1	333	c.274G>A	c.(274-276)GAG>AAG	p.E92K	KIAA1462_uc001iuy.2_Missense_Mutation_p.E92K|KIAA1462_uc001iuz.2_5'UTR|KIAA1462_uc009xle.1_Missense_Mutation_p.E92K	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	92										ovary(4)	4						TACCCCGCCTCCGAGGTTCTG	0.557													8	33					0	0	0.000442599	0	0
ZEB1	6935	broad.mit.edu	37	10	31799743	31799743	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr10:31799743C>T	uc001ivs.3	+	5	687	c.624C>T	c.(622-624)ACC>ACT	p.T208T	ZEB1_uc001ivr.3_5'UTR|ZEB1_uc010qee.1_5'UTR|ZEB1_uc010qef.1_5'UTR|ZEB1_uc009xlh.1_RNA|ZEB1_uc009xli.1_RNA|ZEB1_uc009xlj.1_Silent_p.T134T|ZEB1_uc010qeg.1_Silent_p.T67T|ZEB1_uc009xlk.1_5'UTR|ZEB1_uc001ivt.3_5'UTR|ZEB1_uc001ivu.3_Silent_p.T209T|ZEB1_uc001ivv.3_Silent_p.T188T|ZEB1_uc010qeh.1_Silent_p.T141T|ZEB1_uc009xll.2_RNA|ZEB1_uc009xlm.1_RNA|ZEB1_uc009xln.1_RNA|ZEB1_uc009xlo.1_Silent_p.T191T|ZEB1_uc009xlp.2_Silent_p.T192T	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	208	C2H2-type 2.				cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				GCAGTTACACCTTTGCATACA	0.378													4	19					0	0	0.00024832	0	0
OGDHL	55753	broad.mit.edu	37	10	50959916	50959916	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr10:50959916C>T	uc001jie.2	-	6	848	c.706G>A	c.(706-708)GAG>AAG	p.E236K	OGDHL_uc009xog.2_Missense_Mutation_p.E263K|OGDHL_uc010qgt.1_Missense_Mutation_p.E179K|OGDHL_uc010qgu.1_Missense_Mutation_p.E27K|OGDHL_uc009xoh.2_Missense_Mutation_p.E27K	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	236					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						CGCTTCTCCTCGCTGGAGAAC	0.602													14	71					0	0	0.000151284	0	0
TMEM26	219623	broad.mit.edu	37	10	63170422	63170422	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr10:63170422C>T	uc001jlo.2	-	6	1134	c.765G>A	c.(763-765)TGG>TGA	p.W255*	TMEM26_uc010qij.1_RNA|TMEM26_uc001jlp.1_RNA	NM_178505	NP_848600	Q6ZUK4	TMM26_HUMAN	transmembrane protein 26	255						integral to membrane					0	Prostate(12;0.0112)					TTCCGATGTTCCACAGATCGG	0.483													5	15					0	0	3.59834e-05	0	0
GRID1	2894	broad.mit.edu	37	10	87614336	87614336	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr10:87614336G>A	uc001kdl.1	-	8	1251	c.1150C>T	c.(1150-1152)CGG>TGG	p.R384W	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	384	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CTGTCCTCCCGAAACTCCATC	0.507										Multiple Myeloma(13;0.14)			6	33					0	0	8.12818e-05	0	0
PDE6C	5146	broad.mit.edu	37	10	95380650	95380650	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr10:95380650C>T	uc001kiu.3	+	3	774	c.636C>T	c.(634-636)GTC>GTT	p.V212V		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	212	GAF 1.				visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				GTCTGTAGGTCTTTTCCAAAT	0.413													26	191					0	0	0.000184323	0	0
CYP2C18	1562	broad.mit.edu	37	10	96447594	96447594	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr10:96447594G>A	uc001kjv.3	+	2	562	c.236G>A	c.(235-237)GGA>GAA	p.G79E	CYP2C18_uc001kjw.3_Missense_Mutation_p.G79E|CYP2C19_uc009xus.1_5'Flank|CYP2C19_uc010qny.1_5'Flank	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	79					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding	p.G79V(1)		ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		GTGTTGCATGGATATGAAGCA	0.423													4	23					0	0	3.59834e-05	0	0
DNMBP	23268	broad.mit.edu	37	10	101646230	101646231	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr10:101646230_101646231CC>TT	uc001kqj.2	-	13	3536_3537	c.3444_3445GG>AA	c.(3442-3447)GAGGAG>GAAAAG	p.E1149K	DNMBP_uc010qpl.1_Missense_Mutation_p.E85K|DNMBP_uc001kqg.2_Missense_Mutation_p.E437K|DNMBP_uc001kqh.2_Missense_Mutation_p.E781K	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	1149	Potential.|BAR.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		GACTGCAGCTCCTCCAGGGTCT	0.55													11	76					0	0	6.4e-05	0	0
HABP2	3026	broad.mit.edu	37	10	115335690	115335690	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr10:115335690G>A	uc001lai.3	+	4	361	c.258G>A	c.(256-258)GGG>GGA	p.G86G	HABP2_uc010qrz.1_RNA|HABP2_uc010qry.1_Missense_Mutation_p.G75E	NM_004132	NP_004123	Q14520	HABP2_HUMAN	hyaluronan binding protein 2 preproprotein	86	EGF-like 1.				cell adhesion|proteolysis	extracellular space	glycosaminoglycan binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.0233)|Breast(234;0.0672)		Epithelial(162;0.00319)|all cancers(201;0.0112)		AACACGGTGGGGACTGCCTCG	0.547													21	88					0	0	0.000295444	0	0
VWA2	340706	broad.mit.edu	37	10	116045915	116045915	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr10:116045915C>T	uc001lbl.1	+	11	1536	c.1215C>T	c.(1213-1215)GAC>GAT	p.D405D	VWA2_uc001lbk.1_Silent_p.D405D|VWA2_uc009xyf.1_Silent_p.D101D	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	405	VWFA 2.					extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		ATGTGCCTGACCTGGTCTGGA	0.687													20	72					0	0	0.000229342	0	0
DPYSL4	10570	broad.mit.edu	37	10	134016294	134016294	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr10:134016294G>A	uc009ybb.2	+	12	1580	c.1426G>A	c.(1426-1428)GAC>AAC	p.D476N		NM_006426	NP_006417	O14531	DPYL4_HUMAN	dihydropyrimidinase-like 4	476					axon guidance|pyrimidine base catabolic process	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			central_nervous_system(2)	2		all_cancers(35;4.33e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;7.21e-05)|Epithelial(32;8.01e-05)|all cancers(32;9.29e-05)|BRCA - Breast invasive adenocarcinoma(275;0.206)		AACATTCCCGGACTTTGTCTA	0.622													11	54					0	0	6.40141e-05	0	0
GPR123	84435	broad.mit.edu	37	10	134898381	134898381	+	Silent	SNP	C	T	T	rs140828209	by1000genomes	TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr10:134898381C>T	uc001llw.2	+	8	1443	c.1443C>T	c.(1441-1443)ATC>ATT	p.I481I				Q86SQ6	GP123_HUMAN	RecName: Full=Probable G-protein coupled receptor 123;	230	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		AGGAAGGAATCGCACCTGGGG	0.622													5	23					0	0	0.000602214	0	0
VENTX	27287	broad.mit.edu	37	10	135053799	135053799	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr10:135053799G>A	uc010quy.1	+	3	777	c.766G>A	c.(766-768)GAT>AAT	p.D256N		NM_014468	NP_055283	O95231	VENTX_HUMAN	VENT homeobox	256					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(35;4.15e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;7.8e-06)|Epithelial(32;9.31e-06)|all cancers(32;1.19e-05)		ACAGACGGGGGATGCATTTTG	0.647													8	29					0	0	0.000442599	0	0
MUC2	4583	broad.mit.edu	37	11	1095748	1095748	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:1095748G>A	uc001lsx.1	+	36	13372	c.13345G>A	c.(13345-13347)GAG>AAG	p.E4449K		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4449						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GGTGGAGTGTGAGCCGCCGCC	0.652													5	7					0	0	3.59834e-05	0	0
NAP1L4	4676	broad.mit.edu	37	11	2979666	2979667	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:2979666_2979667GG>TT	uc001lxc.2	-	10	995_996	c.854_855CC>AA	c.(853-855)CCC>CAA	p.P285Q	NAP1L4_uc009ydt.2_RNA|NAP1L4_uc010qxm.1_Missense_Mutation_p.P285Q|NAP1L4_uc010qxn.1_Missense_Mutation_p.P285Q	NM_005969	NP_005960	Q99733	NP1L4_HUMAN	nucleosome assembly protein 1-like 4	285					nucleosome assembly	chromatin assembly complex|cytoplasm	unfolded protein binding			ovary(1)	1		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00301)|LUSC - Lung squamous cell carcinoma(625;0.211)		AGGACTCATTGGGTACTTGTTT	0.342													14	586					0	0	6.4e-05	0	0
OR56A4	120793	broad.mit.edu	37	11	6023653	6023653	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:6023653G>A	uc010qzv.1	-	1	726	c.726C>T	c.(724-726)CTC>CTT	p.L242L		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CATCACAAGAGAGTTTGGACA	0.433													17	15					0	0	0.00074312	0	0
TCP11L1	55346	broad.mit.edu	37	11	33065476	33065476	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:33065476C>T	uc001mud.2	+	2	557	c.157C>T	c.(157-159)CCT>TCT	p.P53S	TCP11L1_uc009yju.2_5'UTR|TCP11L1_uc010rei.1_Missense_Mutation_p.P53S|TCP11L1_uc001mue.2_Missense_Mutation_p.P53S	NM_018393	NP_060863	Q9NUJ3	T11L1_HUMAN	t-complex 11 (mouse) like 1	53											0						AGTGCAGAGACCTCACTGTAA	0.468													27	64					0	0	0.000147802	0	0
ELF5	2001	broad.mit.edu	37	11	34502425	34502425	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:34502425C>T	uc001mvo.1	-	6	825	c.595G>A	c.(595-597)GAA>AAA	p.E199K	ELF5_uc001mvp.1_Missense_Mutation_p.E189K|ELF5_uc009ykd.1_Missense_Mutation_p.E94K	NM_198381	NP_938195	Q9UKW6	ELF5_HUMAN	E74-like factor 5 ESE-2a	199	ETS.				cell proliferation|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.0087)|all_hematologic(20;0.0384)				ATTCCTTGTTCCCTATCTTCC	0.428													7	25					0	0	0.000157383	0	0
SLC1A2	6506	broad.mit.edu	37	11	35287299	35287299	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:35287299C>T	uc001mwd.2	-	10	2020	c.1428G>A	c.(1426-1428)AGG>AGA	p.R476R	SLC1A2_uc001mwe.2_Silent_p.R467R|SLC1A2_uc010rev.1_Silent_p.R476R	NM_004171	NP_004162	P43004	EAA2_HUMAN	excitatory amino acid transporter 2	476					D-aspartate import|L-glutamate import|synaptic transmission	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|central_nervous_system(1)	3	all_lung(20;0.211)|all_epithelial(35;0.234)	all_hematologic(20;0.109)	STAD - Stomach adenocarcinoma(6;0.00731)		L-Glutamic Acid(DB00142)	AAGTTCTCATCCTGTCCCTGG	0.353													16	23					0	0	0.000422831	0	0
PRR5L	79899	broad.mit.edu	37	11	36424900	36424900	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:36424900G>A	uc001mwo.3	+	3	606	c.217G>A	c.(217-219)GAG>AAG	p.E73K	PRR5L_uc001mwp.2_Missense_Mutation_p.E73K|PRR5L_uc009ykk.2_Intron|PRR5L_uc010rfc.1_Missense_Mutation_p.E73K	NM_001160167	NP_001153639	Q6MZQ0	PRR5L_HUMAN	protor-2 isoform a	73										ovary(1)	1						GCAAAGCAACGAGCTCTATGC	0.507													16	34					0	0	0.00074312	0	0
SYT13	57586	broad.mit.edu	37	11	45267949	45267949	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:45267949C>T	uc001myq.2	-	5	1087	c.961G>A	c.(961-963)GAG>AAG	p.E321K	SYT13_uc009yku.1_Missense_Mutation_p.E177K	NM_020826	NP_065877	Q7L8C5	SYT13_HUMAN	synaptotagmin XIII	321	C2 2.|Cytoplasmic (Potential).					transport vesicle				ovary(1)	1						CCCAGGAGCTCCTTGGACTGG	0.592													16	22					0	0	0.000566183	0	0
SPI1	6688	broad.mit.edu	37	11	47399874	47399874	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:47399874G>A	uc001nfc.1	-	1	254	c.31C>T	c.(31-33)CCC>TCC	p.P11S	SPI1_uc001nfb.1_Missense_Mutation_p.P11S|SLC39A13_uc001nfd.2_Intron|SPI1_uc009ylp.1_Missense_Mutation_p.P5S	NM_003120	NP_003111	P17947	SPI1_HUMAN	hematopoietic transcription factor PU.1 isoform	11					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of erythrocyte differentiation	nucleus	protein binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)	2				Lung(87;0.0967)		GGGACGAGGGGAAACCCTTCC	0.682													8	13					0	0	0.000274275	0	0
OR8K5	219453	broad.mit.edu	37	11	55927077	55927077	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:55927077G>A	uc010rja.1	-	1	717	c.717C>T	c.(715-717)TCC>TCT	p.S239S		NM_001004058	NP_001004058	Q8NH50	OR8K5_HUMAN	olfactory receptor, family 8, subfamily K,	239	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(21;0.00693)	Lung NSC(402;0.197)|all_epithelial(135;0.236)				AACCACATGTGGAGAAAGCCT	0.408													3	6					0	0	0.00024832	0	0
OR4D6	219983	broad.mit.edu	37	11	59224633	59224633	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:59224633C>T	uc010rku.1	+	1	200	c.200C>T	c.(199-201)TCA>TTA	p.S67L		NM_001004708	NP_001004708	Q8NGJ1	OR4D6_HUMAN	olfactory receptor, family 4, subfamily D,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CGGAACAAATCAGTCCTGGAC	0.468													19	30					0	0	0.00074312	0	0
MTA2	9219	broad.mit.edu	37	11	62365843	62365844	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:62365843_62365844GG>TT	uc001ntq.1	-	5	708_709	c.327_328CC>AA	c.(325-330)ACCCTC>ACAATC	p.L110I	MTA2_uc010rlx.1_5'UTR	NM_004739	NP_004730	O94776	MTA2_HUMAN	metastasis-associated protein 2	110	BAH.				chromatin assembly or disassembly	NuRD complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TCATTCAAGAGGGTCACACTGC	0.515													13	328					0	0	6.4e-05	0	0
SLC22A10	387775	broad.mit.edu	37	11	63064784	63064784	+	Silent	SNP	A	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:63064784A>C	uc009yor.2	+	3	724	c.516A>C	c.(514-516)CGA>CGC	p.R172R	SLC22A10_uc010rmo.1_RNA|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Intron	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	172	Cytoplasmic (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						GGTTTGGGCGAAGATTTATTC	0.408													10	23					0	0	0.000151284	0	0
PLA2G16	11145	broad.mit.edu	37	11	63365622	63365622	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:63365622G>A	uc001nxh.2	-	2	452	c.29C>T	c.(28-30)CCT>CTT	p.P10L	PLA2G16_uc001nxi.2_Intron|PLA2G16_uc009you.1_Missense_Mutation_p.P10L	NM_007069	NP_009000	P53816	PAG16_HUMAN	HRAS-like suppressor 3	10					lipid catabolic process	integral to membrane|perinuclear region of cytoplasm	hydrolase activity|protein binding			ovary(1)	1						CAGGTCTCCAGGCTTAGGCTC	0.522													12	12					0	0	0.00010058	0	0
DPP3	10072	broad.mit.edu	37	11	66249829	66249829	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:66249829C>T	uc001oig.1	+	2	220	c.158C>T	c.(157-159)TCC>TTC	p.S53F	DPP3_uc001oif.1_Missense_Mutation_p.S53F|DPP3_uc010rpe.1_Missense_Mutation_p.S72F	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	53					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						CTTCAGACCTCCCCTGAGGCC	0.667													17	38					0	0	0.00074312	0	0
ALDH3B2	222	broad.mit.edu	37	11	67430814	67430814	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:67430814G>A	uc001omr.2	-	10	1469	c.1030C>T	c.(1030-1032)CAC>TAC	p.H344Y	ALDH3B2_uc001oms.2_Missense_Mutation_p.H344Y	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	344					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	CAGGTGCGGTGGTGGGAGAAG	0.612													12	28					0	0	0.000151284	0	0
SHANK2	22941	broad.mit.edu	37	11	70505998	70505998	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:70505998C>T	uc001oqc.2	-	14	2074	c.1996G>A	c.(1996-1998)GAG>AAG	p.E666K	SHANK2_uc010rqn.1_Missense_Mutation_p.E78K|SHANK2_uc001opz.2_Missense_Mutation_p.E78K|uc009ysn.1_Intron|SHANK2_uc010rqp.1_Missense_Mutation_p.E78K	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	287	PDZ.				intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			TCCACGGACTCCAGGTACTGT	0.557													10	27					0	0	0.000151284	0	0
MTNR1B	4544	broad.mit.edu	37	11	92715239	92715239	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:92715239C>T	uc001pdk.1	+	2	953	c.850C>T	c.(850-852)CAG>TAG	p.Q284*		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	284	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	AATGGCTCCCCAGATCCCTGA	0.502													140	236					0	0	0.000781405	0	0
CNTN5	53942	broad.mit.edu	37	11	99690287	99690287	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:99690287C>T	uc001pga.2	+	4	407	c.68C>T	c.(67-69)TCT>TTT	p.S23F	CNTN5_uc009ywv.1_Missense_Mutation_p.S23F|CNTN5_uc001pfz.2_Missense_Mutation_p.S23F|CNTN5_uc001pgb.2_Intron	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	23					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TATTCAAAATCTCTTCCTGGT	0.323													12	77					0	0	0.00010058	0	0
DDX10	1662	broad.mit.edu	37	11	108562663	108562663	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:108562663C>T	uc001pkm.2	+	8	1101	c.1036C>T	c.(1036-1038)CAT>TAT	p.H346Y	DDX10_uc001pkl.1_Missense_Mutation_p.H346Y	NM_004398	NP_004389	Q13206	DDX10_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	346	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity			breast(2)|lung(1)|prostate(1)	4		all_cancers(61;1.29e-11)|all_epithelial(67;2.96e-07)|Melanoma(852;1.54e-05)|Acute lymphoblastic leukemia(157;4.24e-05)|all_hematologic(158;0.000141)|Breast(348;0.026)|all_neural(223;0.0729)		BRCA - Breast invasive adenocarcinoma(274;2.48e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.000609)|OV - Ovarian serous cystadenocarcinoma(223;0.133)		CCTTGCACTCCATGGTCGACA	0.468			T	NUP98	AML*								14	28					0	0	0.000219431	0	0
DSCAML1	57453	broad.mit.edu	37	11	117391953	117391953	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:117391953C>T	uc001prh.1	-	6	1287	c.1285G>A	c.(1285-1287)GAG>AAG	p.E429K	DSCAML1_uc001pri.1_Missense_Mutation_p.E233K	NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	369	Extracellular (Potential).|Ig-like C2-type 4.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		AGCAGCGTCTCGTTGCTGAGC	0.642													41	68					0	0	0.000781405	0	0
OR8B4	283162	broad.mit.edu	37	11	124294611	124294611	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:124294611G>A	uc010sak.1	-	1	157	c.157C>T	c.(157-159)CCT>TCT	p.P53S		NM_001005196	NP_001005196	Q96RC9	OR8B4_HUMAN	olfactory receptor, family 8, subfamily B,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		TGAAGGCTAGGATTTATCCCA	0.438													4	7					0	0	0.00024832	0	0
SPA17	53340	broad.mit.edu	37	11	124545172	124545172	+	Silent	SNP	A	G	G			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:124545172A>G	uc001qap.2	+	2	148	c.12A>G	c.(10-12)CCA>CCG	p.P4P	SIAE_uc001qan.2_5'Flank|SIAE_uc001qao.1_5'Flank	NM_017425	NP_059121	Q15506	SP17_HUMAN	sperm autoantigenic protein 17	4					binding of sperm to zona pellucida|ciliary or flagellar motility|signal transduction|spermatogenesis	cytoplasm|flagellum|membrane|motile cilium|primary cilium	cAMP-dependent protein kinase regulator activity				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0223)		TGTCGATTCCATTCTCCAACA	0.398													39	65					0	0	0.000509022	0	0
ROBO3	64221	broad.mit.edu	37	11	124740156	124740156	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:124740156C>T	uc001qbc.2	+	5	1054	c.862C>T	c.(862-864)CGT>TGT	p.R288C		NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	288	Ig-like C2-type 3.|Extracellular (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		TCCCCCACCTCGTCTACGCTG	0.582													12	23					0	0	6.40141e-05	0	0
IGSF9B	22997	broad.mit.edu	37	11	133791039	133791039	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr11:133791039C>T	uc001qgx.3	-	18	2812	c.2581G>A	c.(2581-2583)GAC>AAC	p.D861N		NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	861	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		TCGGCAGGGTCCATCACGAAG	0.657													25	46					0	0	0.000878237	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1994178	1994178	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:1994178C>T	uc001qjp.2	-	10	1364	c.1133G>A	c.(1132-1134)AGA>AAA	p.R378K	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Missense_Mutation_p.R294K	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	378	VWFA.|Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		GAAGGCTTCTCTCAGGGCTTG	0.597													20	127					0	0	0.00047179	0	0
ATN1	1822	broad.mit.edu	37	12	7048061	7048061	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:7048061C>T	uc001qrw.1	+	7	3172	c.2935C>T	c.(2935-2937)CTG>TTG	p.L979L	ATN1_uc001qrx.1_Silent_p.L979L	NM_001007026	NP_001007027	P54259	ATN1_HUMAN	atrophin-1	979					cell death|central nervous system development	cytoplasm|nucleus	protein domain specific binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						GGGCCTGGCTCTGCAGCCTGG	0.672													12	74					0	0	0.000219431	0	0
CLEC4C	170482	broad.mit.edu	37	12	7894077	7894077	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:7894077G>A	uc001qtg.1	-	3	349	c.175C>T	c.(175-177)CGA>TGA	p.R59*	CLEC4C_uc001qth.1_Nonsense_Mutation_p.R59*|CLEC4C_uc001qti.1_Nonsense_Mutation_p.R28*	NM_130441	NP_569708	Q8WTT0	CLC4C_HUMAN	C-type lectin domain family 4, member C isoform	59	Extracellular (Potential).				innate immune response	integral to membrane	sugar binding			ovary(2)|skin(1)	3				Kidney(36;0.0915)		TGATACTCTCGTAACTTGGAC	0.423													37	149					0	0	0.000589545	0	0
CLEC6A	93978	broad.mit.edu	37	12	8612252	8612252	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:8612252C>T	uc001qum.1	+	3	298	c.181C>T	c.(181-183)CAT>TAT	p.H61Y		NM_001007033	NP_001007034	Q6EIG7	CLC6A_HUMAN	dectin-2	61	Extracellular (Potential).				defense response to fungus|innate immune response|positive regulation of cytokine secretion|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	sugar binding			breast(1)	1	Lung SC(5;0.184)					ACACTCATATCATTCAAGTCT	0.373													21	54					0	0	0.000375601	0	0
DDX11	1663	broad.mit.edu	37	12	31237922	31237922	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:31237922G>C	uc001rjt.1	+	5	751	c.500G>C	c.(499-501)AGA>ACA	p.R167T	DDX11_uc010sjw.1_Missense_Mutation_p.R167T|DDX11_uc010sjx.1_RNA|DDX11_uc001rjr.1_Missense_Mutation_p.R167T|DDX11_uc001rjs.1_Missense_Mutation_p.R167T|DDX11_uc001rju.1_5'UTR|DDX11_uc001rjv.1_Missense_Mutation_p.R167T|DDX11_uc001rjw.1_Missense_Mutation_p.R141T|DDX11_uc001rjx.1_5'Flank	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	167	Glu-rich.|Helicase ATP-binding.				G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					GAAGAAGAAAGAGAGAATCTC	0.612										Multiple Myeloma(12;0.14)			3	11					0	0	6.4e-05	0	0
SLC38A4	55089	broad.mit.edu	37	12	47172358	47172358	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:47172358G>A	uc001rpi.2	-	11	1318	c.919C>T	c.(919-921)CAT>TAT	p.H307Y	SLC38A4_uc001rpj.2_Missense_Mutation_p.H307Y	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	307	Extracellular (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					CCACTGTCATGAAGAGAGCCC	0.478													4	7					0	0	3.59834e-05	0	0
AMIGO2	347902	broad.mit.edu	37	12	47471823	47471823	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:47471823G>A	uc001rpm.2	-	3	1618	c.963C>T	c.(961-963)TTC>TTT	p.F321F	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Silent_p.F321F|AMIGO2_uc001rpl.2_Silent_p.F321F	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	321	Extracellular (Potential).|Ig-like C2-type.				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					CCACCCAGATGAAATCCGTAT	0.463													23	124					0	0	0.000878237	0	0
POU6F1	5463	broad.mit.edu	37	12	51586221	51586222	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:51586221_51586222GG>AA	uc001rxy.2	-	3	474_475	c.282_283CC>TT	c.(280-285)CCCCAG>CCTTAG	p.Q95*	POU6F1_uc001rxz.2_Nonsense_Mutation_p.Q95*|POU6F1_uc001rya.2_Nonsense_Mutation_p.Q95*	NM_002702	NP_002693	Q14863	PO6F1_HUMAN	POU class 6 homeobox 1	95	Gln/Pro-rich.				brain development|heart development|muscle organ development	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						ACAGCAGGCTGGGGCACGGTTG	0.604													15	108					0	0	6.4e-05	0	0
KRT5	3852	broad.mit.edu	37	12	52910587	52910587	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:52910587G>A	uc001san.2	-	7	1436	c.1273C>T	c.(1273-1275)CTC>TTC	p.L425F	KRT5_uc009zmh.2_Missense_Mutation_p.L425F	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	425	Rod.|Coil 2.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCATCCTTGAGGGCCAGCTCC	0.617													5	61					0	0	0.000602214	0	0
KRT5	3852	broad.mit.edu	37	12	52913666	52913666	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:52913666C>T	uc001san.2	-	1	578	c.415G>A	c.(415-417)GGT>AGT	p.G139S	KRT5_uc009zmh.2_Missense_Mutation_p.G139S	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	139	Head.|Gly-rich.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		TCTTGGATACCTCCAGGAGGG	0.413													11	48					0	0	0.000673444	0	0
ESPL1	9700	broad.mit.edu	37	12	53683916	53683916	+	Missense_Mutation	SNP	G	A	A	rs149892921		TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:53683916G>A	uc001sck.2	+	23	5252	c.5161G>A	c.(5161-5163)GTG>ATG	p.V1721M	ESPL1_uc001scj.2_Missense_Mutation_p.V1396M	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	1721					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						GCCCGGAACCGTGGGCAACAC	0.552													5	18					0	0	0.000602214	0	0
MIR616	693201	broad.mit.edu	37	12	57913004	57913004	+	RNA	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:57913004G>A	hsa-mir-616|MI0003629	-			c.39G>A			DDIT3_uc001soi.2_Intron|DDIT3_uc009zps.2_Intron|DDIT3_uc009zpt.2_Intron																	0						ttcatgtcatggaagtcactg	0													5	45					0	0	0.000602214	0	0
BEST3	144453	broad.mit.edu	37	12	70049108	70049108	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:70049108G>A	uc001svg.2	-	10	1813	c.1586C>T	c.(1585-1587)TCT>TTT	p.S529F	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Missense_Mutation_p.S316F|BEST3_uc010stm.1_Missense_Mutation_p.S423F	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	529	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			TGTAAACTCAGAGCTCAAGAT	0.572													13	48					0	0	0.00010058	0	0
TMEM19	55266	broad.mit.edu	37	12	72091168	72091168	+	Missense_Mutation	SNP	C	T	T	rs139343453		TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:72091168C>T	uc001sws.2	+	4	1074	c.491C>T	c.(490-492)TCC>TTC	p.S164F	TMEM19_uc001swr.1_Missense_Mutation_p.S150F|TMEM19_uc009zru.1_RNA	NM_018279	NP_060749	Q96HH6	TMM19_HUMAN	transmembrane protein 19	164						integral to membrane					0		Breast(359;0.0889)		GBM - Glioblastoma multiforme(134;0.044)		GTCGATTTTTCCAAGCAGTAC	0.522													22	52					0	0	0.000295444	0	0
TRHDE	29953	broad.mit.edu	37	12	73012805	73012805	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:73012805A>G	uc001sxa.2	+	13	2351	c.2321A>G	c.(2320-2322)TAC>TGC	p.Y774C		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	774	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						ATGGAAAACTACAACATTTTC	0.333													6	12					0	0	8.12818e-05	0	0
MYF5	4617	broad.mit.edu	37	12	81112667	81112667	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:81112667C>T	uc001szg.2	+	3	740	c.605C>T	c.(604-606)TCC>TTC	p.S202F		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	202					muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						AACTCCTTATCCAGCTTGGAT	0.438													33	67					0	0	0.000191422	0	0
ACSS3	79611	broad.mit.edu	37	12	81472039	81472039	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:81472039G>T	uc001szl.1	+	1	231	c.140G>T	c.(139-141)GGG>GTG	p.G47V	ACSS3_uc001szm.1_Missense_Mutation_p.G47V	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	47						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						GGCGGTCTCGGGGGCCGGGGA	0.736													5	3					3.59834e-05	0.000388532	3.59834e-05	1	0
MGAT4C	25834	broad.mit.edu	37	12	86373960	86373960	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:86373960G>A	uc001tai.3	-	8	1794	c.544C>T	c.(544-546)CTA>TTA	p.L182L	MGAT4C_uc001tal.3_Silent_p.L182L|MGAT4C_uc001taj.3_Silent_p.L182L|MGAT4C_uc001tak.3_Silent_p.L182L|MGAT4C_uc010sum.1_Silent_p.L206L|MGAT4C_uc001tah.3_Silent_p.L182L	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	182	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						AGGCCATCTAGGATTGGGTAA	0.373													6	16					0	0	3.59834e-05	0	0
HAL	3034	broad.mit.edu	37	12	96387588	96387588	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:96387588C>T	uc001tem.1	-	7	810	c.513G>A	c.(511-513)GGG>GGA	p.G171G	HAL_uc009zti.1_Intron|HAL_uc010suw.1_Intron|HAL_uc010sux.1_Silent_p.G171G	NM_002108	NP_002099	P42357	HUTH_HUMAN	histidine ammonia-lyase	171					biosynthetic process|histidine catabolic process	cytosol	histidine ammonia-lyase activity			ovary(2)|skin(1)	3					L-Histidine(DB00117)	TGGCAAATTTCCCAAAACCTG	0.284													5	42					0	0	0.000157383	0	0
DEPDC4	120863	broad.mit.edu	37	12	100656056	100656056	+	Missense_Mutation	SNP	C	T	T	rs145497556		TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:100656056C>T	uc001thi.2	-	3	689	c.686G>A	c.(685-687)CGG>CAG	p.R229Q	DEPDC4_uc001thh.1_RNA|DEPDC4_uc001thj.1_Missense_Mutation_p.R162Q|DEPDC4_uc009ztv.1_Missense_Mutation_p.R229Q|DEPDC4_uc001thk.1_Missense_Mutation_p.R40Q|DEPDC4_uc001thl.1_RNA	NM_152317	NP_689530	Q8N2C3	DEPD4_HUMAN	DEP domain containing 4	229					intracellular signal transduction						0						TTTTGAAAGCCGGAGAAAAGG	0.308													10	50					0	0	0.000673444	0	0
ACACB	32	broad.mit.edu	37	12	109629448	109629448	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:109629448C>T	uc001tob.2	+	14	2294	c.2175C>T	c.(2173-2175)TCC>TCT	p.S725S	ACACB_uc001toc.2_Silent_p.S725S	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	725	Biotin carboxylation.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	AGGAACTGTCCATCCGAGGCG	0.488													24	119					0	0	0.000339439	0	0
NOS1	4842	broad.mit.edu	37	12	117768790	117768790	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:117768790C>T	uc001twm.1	-	2	771	c.85G>A	c.(85-87)GGA>AGA	p.G29R		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	29	Interaction with NOSIP (By similarity).|PDZ.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	ACCAGAAATCCCAGGCCCCCA	0.562													8	63					0	0	0.000157383	0	0
VPS33A	65082	broad.mit.edu	37	12	122723180	122723181	+	Missense_Mutation	DNP	CC	AA	AA	rs149119632		TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:122723180_122723181CC>AA	uc001ucd.2	-	10	1368_1369	c.1255_1256GG>TT	c.(1255-1257)GGG>TTG	p.G419L	VPS33A_uc001ucc.2_RNA	NM_022916	NP_075067	Q96AX1	VP33A_HUMAN	vacuolar protein sorting 33A	419					lysosome localization|melanosome localization|platelet formation|protein transport|regulation of developmental pigmentation|vesicle docking involved in exocytosis	early endosome|late endosome membrane|lysosomal membrane|perinuclear region of cytoplasm	protein binding			skin(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000336)|Epithelial(86;0.000606)|BRCA - Breast invasive adenocarcinoma(302;0.23)		TTGTTTGAGCCCACTATTACAC	0.356													11	276					0	0	6.4e-05	0	0
DNAH10	196385	broad.mit.edu	37	12	124350537	124350537	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:124350537C>T	uc001uft.3	+	40	6755	c.6730C>T	c.(6730-6732)CGA>TGA	p.R2244*		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2244	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AACTGTCTCTCGATGTGGAAT	0.338													18	99					0	0	0.000229342	0	0
DDX51	317781	broad.mit.edu	37	12	132624716	132624716	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr12:132624716C>T	uc001ujy.3	-	12	1741	c.1702G>A	c.(1702-1704)GGC>AGC	p.G568S		NM_175066	NP_778236	Q8N8A6	DDX51_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	568	Helicase C-terminal.				rRNA processing	nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			lung(1)|pancreas(1)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.241)		OV - Ovarian serous cystadenocarcinoma(86;7.59e-08)|Epithelial(86;3.62e-07)|all cancers(50;2.13e-05)		ACGTCGATGCCTCGCGCGGTG	0.711													13	39					0	0	0.000219431	0	0
LOC284232	284232	broad.mit.edu	37	13	19414219	19414219	+	RNA	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr13:19414219C>T	uc010tcj.1	-	1		c.31891G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GTTTCTCTTTCCTTTCTAATT	0.308													5	27					0	0	0.000602214	0	0
PARP4	143	broad.mit.edu	37	13	25029201	25029202	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr13:25029201_25029202GG>AA	uc001upl.2	-	22	2817_2818	c.2711_2712CC>TT	c.(2710-2712)TCC>TTT	p.S904F	PARP4_uc010tdc.1_Missense_Mutation_p.S904F	NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	904	VWFA.				cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		CACCCACCAAGGACAGCGCATG	0.51													33	213					0	0	6.4e-05	0	0
WASF3	10810	broad.mit.edu	37	13	27241676	27241676	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr13:27241676G>A	uc001uqv.2	+	5	516	c.291G>A	c.(289-291)ATG>ATA	p.M97I	WASF3_uc001uqw.2_Missense_Mutation_p.M97I	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3	97					actin filament polymerization	cytoplasm|cytoskeleton	actin binding			pancreas(1)	1	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		ATATCAACATGAAAAAAGCTT	0.348													7	53					0	0	0.000442599	0	0
MTUS2	23281	broad.mit.edu	37	13	29600487	29600487	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr13:29600487C>T	uc001usl.3	+	1	1740	c.1682C>T	c.(1681-1683)CCC>CTC	p.P561L		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	551						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						CCTACAACACCCAGTAGCAGT	0.512													9	46					0	0	0.000673444	0	0
KL	9365	broad.mit.edu	37	13	33635042	33635042	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr13:33635042C>T	uc001uus.2	+	4	1834	c.1826C>T	c.(1825-1827)TCC>TTC	p.S609F	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	609	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		GGTAACCAGTCCCAGGTGAAC	0.582													8	76					0	0	0.000274275	0	0
STARD13	90627	broad.mit.edu	37	13	33681026	33681026	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr13:33681026G>A	uc001uuw.2	-	13	3219	c.3093C>T	c.(3091-3093)TCC>TCT	p.S1031S	STARD13_uc001uuu.2_Silent_p.S1023S|STARD13_uc001uuv.2_Silent_p.S913S|STARD13_uc001uux.2_Silent_p.S996S|STARD13_uc010tec.1_RNA	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	1031	START.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		CCACGGAGAGGGACACCAGGG	0.532													8	64					0	0	0.000442599	0	0
ATP7B	540	broad.mit.edu	37	13	52539038	52539038	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr13:52539038G>A	uc001vfw.2	-	5	1996	c.1839C>T	c.(1837-1839)ATC>ATT	p.I613I	ATP7B_uc010adv.2_Intron|ATP7B_uc001vfx.2_Silent_p.I613I|ATP7B_uc001vfy.2_Silent_p.I502I|ATP7B_uc010tgt.1_Silent_p.I613I|ATP7B_uc010tgu.1_Silent_p.I613I|ATP7B_uc010tgv.1_Silent_p.I613I|ATP7B_uc010tgs.1_5'Flank|ATP7B_uc010tgw.1_Intron	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	613	HMA 6.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		CCCGTGGACCGATAATTTCCG	0.368									Wilson_disease				20	89					0	0	0.000229342	0	0
KLHL1	57626	broad.mit.edu	37	13	70371056	70371056	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr13:70371056G>A	uc001vip.2	-	7	2247	c.1453C>T	c.(1453-1455)CTG>TTG	p.L485L	KLHL1_uc010thm.1_Silent_p.L424L	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	485	Kelch 1.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		TGGATCCACAGATTTGTTCTC	0.388													10	58					0	0	0.00010058	0	0
SPRY2	10253	broad.mit.edu	37	13	80911809	80911809	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr13:80911809G>A	uc001vli.2	-	2	1010	c.32C>T	c.(31-33)TCG>TTG	p.S11L	SPRY2_uc001vlj.2_Missense_Mutation_p.S11L	NM_005842	NP_005833	O43597	SPY2_HUMAN	sprouty 2	11					epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of ERK1 and ERK2 cascade|positive regulation of gene expression|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein kinase B signaling cascade	cytosol|microtubule|ruffle membrane	protein serine/threonine kinase activator activity			ovary(1)|lung(1)	2	Medulloblastoma(90;0.18)	Acute lymphoblastic leukemia(28;0.218)|Breast(118;0.244)		GBM - Glioblastoma multiforme(99;0.0318)		CAAGGGCTGCGACCCGTTGCC	0.607													17	55					0	0	0.000566183	0	0
SLITRK1	114798	broad.mit.edu	37	13	84455097	84455097	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr13:84455097G>A	uc001vlk.2	-	1	1432	c.546C>T	c.(544-546)CTC>CTT	p.L182L		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	182	Extracellular (Potential).|LRR 6.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		CCCGGAGGTCGAGGTGGGTGA	0.527													31	67					0	0	0.000491102	0	0
SLITRK5	26050	broad.mit.edu	37	13	88327745	88327745	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr13:88327745C>T	uc001vln.2	+	2	321	c.102C>T	c.(100-102)GTC>GTT	p.V34V	SLITRK5_uc010tic.1_Intron	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	34						integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					CATCTCTCGTCCTTTCGTGTG	0.463													27	109					0	0	0.000586117	0	0
HS6ST3	266722	broad.mit.edu	37	13	97485020	97485020	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr13:97485020G>A	uc001vmw.2	+	2	1008	c.984G>A	c.(982-984)ATG>ATA	p.M328I		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	328	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					TGACTTTCATGAACGAGAGTG	0.502													8	41					0	0	6.40141e-05	0	0
NALCN	259232	broad.mit.edu	37	13	101763483	101763483	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr13:101763483C>T	uc001vox.1	-	19	2476	c.2287G>A	c.(2287-2289)GAG>AAG	p.E763K		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	763	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TACCTGCGCTCTTGGCGGATA	0.547													11	40					0	0	0.00010058	0	0
F10	2159	broad.mit.edu	37	13	113803660	113803660	+	Silent	SNP	C	T	T	rs139031355		TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr13:113803660C>T	uc001vsx.2	+	8	1353	c.1296C>T	c.(1294-1296)TTC>TTT	p.F432F	F10_uc001vsy.2_3'UTR|F10_uc001vsz.2_3'UTR	NM_000504	NP_000495	P00742	FA10_HUMAN	coagulation factor X preproprotein	432	Peptidase S1.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of cell migration|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|phospholipid binding|protein binding|serine-type endopeptidase activity			pancreas(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.113)|all_lung(25;0.0364)|all_epithelial(44;0.0373)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0805)|Epithelial(84;0.231)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Enoxaparin(DB01225)|Heparin(DB01109)|Menadione(DB00170)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACACCTACTTCGTGACAGGCA	0.622													11	80					0	0	0.000673444	0	0
AP1G2	8906	broad.mit.edu	37	14	24036410	24036410	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:24036410G>A	uc001wkl.2	-	2	451	c.114C>T	c.(112-114)TCC>TCT	p.S38S	AP1G2_uc001wkj.2_5'UTR|AP1G2_uc001wkk.3_Intron|AP1G2_uc001wkn.2_5'UTR|uc001wko.1_RNA|AP1G2_uc001wkp.1_5'Flank|AP1G2_uc010tnp.1_Silent_p.S38S|AP1G2_uc010aks.2_5'UTR|AP1G2_uc010akt.2_5'UTR|AP1G2_uc010tnq.1_RNA	NM_003917	NP_003908	O75843	AP1G2_HUMAN	adaptor-related protein complex 1, gamma 2	38					interspecies interaction between organisms|intracellular protein transport|vesicle-mediated transport	AP-1 adaptor complex|endosome membrane	protein binding|protein transporter activity			ovary(1)	1	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00672)		CGTCGCGGAAGGAGGCCCGGA	0.632											OREG0022606	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	56					0	0	0.000442599	0	0
DCAF11	80344	broad.mit.edu	37	14	24588419	24588419	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:24588419G>C	uc001wlv.2	+	9	1125	c.845G>C	c.(844-846)GGA>GCA	p.G282A	DCAF11_uc001wlw.2_Missense_Mutation_p.G282A|DCAF11_uc001wlz.2_Missense_Mutation_p.G182A|DCAF11_uc001wly.2_Missense_Mutation_p.G238A|DCAF11_uc001wme.2_Missense_Mutation_p.G242A|DCAF11_uc010tny.1_Missense_Mutation_p.G149A|DCAF11_uc001wmd.2_Missense_Mutation_p.G282A|DCAF11_uc001wmc.2_Missense_Mutation_p.G182A|DCAF11_uc001wmb.3_Missense_Mutation_p.G256A|DCAF11_uc001wma.3_Missense_Mutation_p.G282A	NM_001163484	NP_001156956	Q8TEB1	DCA11_HUMAN	DDB1 and CUL4 associated factor 11 isoform 1	282	WD 3.					CUL4 RING ubiquitin ligase complex	protein binding				0						GAAGTACTAGGAGGGTAAGTG	0.507													24	126					0	0	0.000586117	0	0
C14orf182	283551	broad.mit.edu	37	14	50472359	50472359	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:50472359G>A	uc001wxi.1	-	1	1880	c.159C>T	c.(157-159)TTC>TTT	p.F53F		NM_001012706	NP_001012724	A1A4T8	CN182_HUMAN	hypothetical protein LOC283551	53											0						GCAAGAAGACGAAATGTCTGT	0.532													19	146					0	0	0.000958276	0	0
SYNE2	23224	broad.mit.edu	37	14	64587649	64587649	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:64587649C>T	uc001xgm.2	+	68	13258	c.13028C>T	c.(13027-13029)CCT>CTT	p.P4343L	SYNE2_uc001xgl.2_Missense_Mutation_p.P4343L|SYNE2_uc010apy.2_Missense_Mutation_p.P728L|SYNE2_uc010apz.1_Missense_Mutation_p.P235L	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	4343	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TTGCAGCATCCTACCATTCTA	0.343													7	41					0	0	8.12818e-05	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68250149	68250149	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:68250149G>A	uc001xka.2	-	21	3859	c.3720C>T	c.(3718-3720)TCC>TCT	p.S1240S	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Silent_p.S1240S	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	1240					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		GGCTTTGCCGGGATGAGCAAA	0.592													9	47					0	0	0.000274275	0	0
C14orf43	91748	broad.mit.edu	37	14	74206073	74206074	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:74206073_74206074GG>AA	uc001xot.2	-	2	1421_1422	c.638_639CC>TT	c.(637-639)CCC>CTT	p.P213L	C14orf43_uc001xou.2_Missense_Mutation_p.P213L|C14orf43_uc010tud.1_Missense_Mutation_p.P213L|C14orf43_uc010arw.2_RNA	NM_194278	NP_919254	Q6PJG2	CN043_HUMAN	hypothetical protein LOC91748	213	Gln-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00358)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)|OV - Ovarian serous cystadenocarcinoma(108;0.115)		AGGGTTGCAGGGGCAGTGACTG	0.634													11	88					0	0	6.4e-05	0	0
VSX2	338917	broad.mit.edu	37	14	74711925	74711925	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:74711925C>T	uc001xpq.2	+	3	603	c.513C>T	c.(511-513)CAC>CAT	p.H171H		NM_182894	NP_878314	P58304	VSX2_HUMAN	visual system homeobox 2	171	Homeobox.				multicellular organismal development|response to stimulus|visual perception	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00154)		ACGAAGCCCACTACCCAGACG	0.562													6	25					0	0	3.59834e-05	0	0
NPC2	10577	broad.mit.edu	37	14	74947415	74947416	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:74947415_74947416GG>TT	uc001xpy.2	-	4	537_538	c.430_431CC>AA	c.(430-432)CCA>AAA	p.P144K	NPC2_uc010tus.1_Intron	NM_006432	NP_006423	P61916	NPC2_HUMAN	epididymal secretory protein E1 precursor	144					cholesterol efflux|cholesterol homeostasis|glycolipid transport|intracellular cholesterol transport|phospholipid transport|regulation of isoprenoid metabolic process|response to virus	extracellular region|lysosome	cholesterol binding|enzyme binding				0				BRCA - Breast invasive adenocarcinoma(234;0.00149)		GATCTGTACTGGGATTTCCCAG	0.421													11	411					0	0	6.4e-05	0	0
MIR1260	100302236	broad.mit.edu	37	14	77732568	77732568	+	RNA	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:77732568C>T	hsa-mir-1260|MI0006394	+			c.8C>T			NGB_uc001xtg.1_3'UTR																	0						CATACCTTTCCAGCTCATCCC	0.562													13	57					0	0	0.00074312	0	0
SPTLC2	9517	broad.mit.edu	37	14	77987828	77987829	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:77987828_77987829GG>AA	uc001xub.2	-	10	1587_1588	c.1399_1400CC>TT	c.(1399-1401)CCA>TTA	p.P467L		NM_004863	NP_004854	O15270	SPTC2_HUMAN	serine palmitoyltransferase, long chain base	467				KECVQQLAENTRYFRRRLKEMGFIIYGNEDSPVV -> NGI TIHEVVQTRNTYHRFSPLSPVFSHQCLWIML (in Ref. 5).		integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups			upper_aerodigestive_tract(1)|ovary(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0346)	L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	AGGCACTACTGGAGAGTCTTCA	0.446													10	35					0	0	6.4e-05	0	0
MIR329-1	574408	broad.mit.edu	37	14	101493169	101493169	+	RNA	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:101493169G>A	hsa-mir-329-1|MI0001725	+			c.48G>A			MIR329-2_hsa-mir-329-2|MI0001726_5'Flank|MIR494_hsa-mir-494|MI0003134_5'Flank|uc010txm.1_5'Flank																	0						TAATGAGGACGAAACACACCT	0.468													20	108					0	0	0.00047179	0	0
WDR20	91833	broad.mit.edu	37	14	102661347	102661347	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:102661347C>T	uc001ykz.2	+	2	371	c.322C>T	c.(322-324)CAC>TAC	p.H108Y	WDR20_uc001yky.1_5'UTR|WDR20_uc001yla.2_Intron|WDR20_uc001ylb.2_Intron|WDR20_uc010txu.1_Missense_Mutation_p.H108Y|WDR20_uc001ylc.2_Missense_Mutation_p.H108Y|WDR20_uc001yld.2_Missense_Mutation_p.H108Y|WDR20_uc001yle.2_Intron|WDR20_uc001ylf.2_Missense_Mutation_p.H120Y	NM_144574	NP_653175	Q8TBZ3	WDR20_HUMAN	WD repeat domain 20 isoform 2	108											0						TGACTTCAACCACCTAACAGC	0.418													8	70					0	0	0.000157383	0	0
TRAF3	7187	broad.mit.edu	37	14	103369643	103369643	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:103369643C>T	uc001ymc.1	+	11	1365	c.1012C>T	c.(1012-1014)CGG>TGG	p.R338W	TRAF3_uc001yme.1_Missense_Mutation_p.R313W|TRAF3_uc001ymd.1_Missense_Mutation_p.R338W|TRAF3_uc010txy.1_Missense_Mutation_p.R255W|TRAF3_uc001ymf.1_Missense_Mutation_p.R71W	NM_145725	NP_663777	Q13114	TRAF3_HUMAN	TNF receptor-associated factor 3 isoform 1	338	Potential.				apoptosis|induction of apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|regulation of defense response to virus|regulation of interferon-beta production|regulation of proteolysis|toll-like receptor signaling pathway|tumor necrosis factor-mediated signaling pathway	CD40 receptor complex|cytosol|endosome|internal side of plasma membrane|mitochondrion	signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(154;7.87e-06)|all_epithelial(191;0.0024)		Epithelial(152;9.92e-24)|all cancers(159;2.23e-21)|OV - Ovarian serous cystadenocarcinoma(161;7.85e-12)|Colorectal(3;0.0971)		CAAGGAGATCCGGCCCTTCCG	0.542													14	56					0	0	0.000422831	0	0
MARK3	4140	broad.mit.edu	37	14	103958222	103958222	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:103958222C>T	uc001ymz.3	+	15	2361	c.1695C>T	c.(1693-1695)TTC>TTT	p.F565F	MARK3_uc001ymx.3_Silent_p.F565F|MARK3_uc001ymw.3_Silent_p.F565F|MARK3_uc001yna.3_Silent_p.F549F|MARK3_uc001ymy.3_Silent_p.F486F|MARK3_uc010awp.2_Silent_p.F588F|MARK3_uc010tyb.1_Silent_p.F360F|MARK3_uc010awq.2_Silent_p.F147F	NM_001128918	NP_001122390	P27448	MARK3_HUMAN	MAP/microtubule affinity-regulating kinase 3	565							ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|stomach(1)	4		Melanoma(154;0.155)	Epithelial(46;0.241)			GTAGCACTTTCCACGGCCAGC	0.577													11	23					0	0	0.00010058	0	0
AHNAK2	113146	broad.mit.edu	37	14	105415711	105415711	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:105415711G>A	uc010axc.1	-	7	6197	c.6077C>T	c.(6076-6078)TCC>TTC	p.S2026F	AHNAK2_uc001ypx.2_Missense_Mutation_p.S1926F	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2026						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCCCTGCATGGAGGGGAGACT	0.642													38	164					0	0	0.000814825	0	0
PACS2	23241	broad.mit.edu	37	14	105814892	105814892	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:105814892C>T	uc001yqt.2	+	2	357	c.182C>T	c.(181-183)TCC>TTC	p.S61F	PACS2_uc001yqs.2_5'UTR|PACS2_uc001yqv.2_Missense_Mutation_p.S61F|PACS2_uc001yqu.2_Missense_Mutation_p.S61F	NM_015197	NP_056012	Q86VP3	PACS2_HUMAN	phosphofurin acidic cluster sorting protein 2	61					apoptosis|interspecies interaction between organisms	endoplasmic reticulum lumen|mitochondrion				pancreas(1)	1		all_cancers(154;0.0351)|all_epithelial(191;0.153)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.0145)|Epithelial(46;0.036)	Epithelial(152;0.138)		GAGCTGATCTCCGTGGTGATC	0.617													11	97					0	0	6.40141e-05	0	0
ADAM6	8755	broad.mit.edu	37	14	106405688	106405688	+	RNA	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr14:106405688C>T	uc010tyt.1	-	2358		c.42376G>A								Parts of antibodies, mostly variable regions.												0						TTGGATGTGTCTGGGTTGATG	0.498													26	82					0	0	0.00047179	0	0
C15orf23	90417	broad.mit.edu	37	15	40675118	40675119	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:40675118_40675119CC>TT	uc001zll.2	+	1	197_198	c.82_83CC>TT	c.(82-84)CCG>TTG	p.P28L	C15orf23_uc010ucp.1_Missense_Mutation_p.P28L|C15orf23_uc001zlo.2_Missense_Mutation_p.P28L|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	28						nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		CCACCCACTTCCGCCTAGCTAC	0.564													10	87					0	0	6.4e-05	0	0
CASC5	57082	broad.mit.edu	37	15	40949309	40949309	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:40949309C>T	uc010bbs.1	+	24	6793	c.6632C>T	c.(6631-6633)TCC>TTC	p.S2211F	CASC5_uc010bbt.1_Missense_Mutation_p.S2185F	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	2211	Necessary for kinetochore localization and for interaction with NSL1 and DSN1.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		gaaaaggaatcctggaagaag	0.114													11	61					0	0	6.40141e-05	0	0
ZSCAN29	146050	broad.mit.edu	37	15	43653937	43653938	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:43653937_43653938CG>AT	uc001zrk.1	-	5	2039_2040	c.1892_1893CG>AT	c.(1891-1893)CCG>CAT	p.P631H	ZSCAN29_uc001zrj.1_Missense_Mutation_p.P511H|ZSCAN29_uc010bdf.1_3'UTR|ZSCAN29_uc001zrl.1_RNA|ZSCAN29_uc010bdg.1_Missense_Mutation_p.P241H	NM_152455	NP_689668	Q8IWY8	ZSC29_HUMAN	zinc finger protein 690	631					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.97e-07)		AGCTCTTCTCCGGGAGTGTCAG	0.47													8	164					0	0	6.4e-05	0	0
MAP1A	4130	broad.mit.edu	37	15	43819178	43819178	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:43819178C>T	uc001zrt.2	+	4	5974	c.5507C>T	c.(5506-5508)CCC>CTC	p.P1836L		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1836						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	CCCACTACTCCCTCATGGCTG	0.612													8	69					0	0	0.000274275	0	0
DUOX2	50506	broad.mit.edu	37	15	45387154	45387154	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:45387154C>T	uc010bea.2	-	32	4578	c.4375G>A	c.(4375-4377)GAC>AAC	p.D1459N	DUOX2_uc001zun.2_Missense_Mutation_p.D1459N	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1459	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		GTCCTGAGGTCGAACTTCTCA	0.592													8	70					0	0	0.000274275	0	0
SLC12A1	6557	broad.mit.edu	37	15	48500269	48500269	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:48500269C>T	uc001zwn.3	+	2	569	c.353C>T	c.(352-354)ACC>ATC	p.T118I	SLC12A1_uc010uew.1_Intron|SLC12A1_uc010bem.2_Missense_Mutation_p.T118I|SLC12A1_uc010uex.1_Missense_Mutation_p.T118I	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	118	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	TATCGTAACACCGGCAGCATC	0.488													5	43					0	0	3.59834e-05	0	0
SLC27A2	11001	broad.mit.edu	37	15	50519357	50519357	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:50519357G>A	uc001zxw.2	+	7	1671	c.1439G>A	c.(1438-1440)AGA>AAA	p.R480K	SLC27A2_uc010bes.2_Missense_Mutation_p.R427K|SLC27A2_uc001zxx.2_Missense_Mutation_p.R245K	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid	480	Cytoplasmic (Potential).				bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		TTCCACGACAGAGTTGGAGAT	0.393													6	59					0	0	8.12818e-05	0	0
UNC13C	440279	broad.mit.edu	37	15	54305995	54305995	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:54305995C>T	uc002ack.2	+	1	895	c.895C>T	c.(895-897)CGG>TGG	p.R299W		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	299					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TGTCCAGTCTCGGAGGGAAAC	0.443													11	35					0	0	0.00010058	0	0
CCPG1	9236	broad.mit.edu	37	15	55657426	55657426	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:55657426G>A	uc002acv.1	-	7	953	c.788C>T	c.(787-789)TCC>TTC	p.S263F	CCPG1_uc002acy.2_Missense_Mutation_p.S263F|CCPG1_uc002acu.1_Missense_Mutation_p.S119F|CCPG1_uc002acw.1_Intron|CCPG1_uc002acx.2_Missense_Mutation_p.S263F|CCPG1_uc010bfk.1_Missense_Mutation_p.S263F|CCPG1_uc002acz.1_Missense_Mutation_p.S263F	NM_020739	NP_065790	Q9ULG6	CCPG1_HUMAN	cell cycle progression 1 isoform 2	263	Lumenal (Potential).|Potential.|Interaction with MCF2L and SRC (By similarity).				cell cycle	integral to membrane				ovary(1)	1				all cancers(107;0.0354)		TTGACACTGGGAAAGATAATC	0.274													17	151					0	0	0.000132079	0	0
ANKDD1A	348094	broad.mit.edu	37	15	65226364	65226365	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:65226364_65226365CC>TT	uc002aoa.2	+	9	826_827	c.797_798CC>TT	c.(796-798)GCC>GTT	p.A266V	ANKDD1A_uc002aoc.2_RNA|ANKDD1A_uc010bha.2_Missense_Mutation_p.A175V	NM_182703	NP_874362	Q495B1	AKD1A_HUMAN	ankyrin repeat and death domain containing 1A	266	ANK 8.				signal transduction					ovary(1)	1						CACTATGCAGCCCTCAGTGGCT	0.48													20	109					0	0	6.4e-05	0	0
DIS3L	115752	broad.mit.edu	37	15	66615079	66615079	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:66615079G>A	uc010ujm.1	+	10	1396	c.1381G>A	c.(1381-1383)GAG>AAG	p.E461K	DIS3L_uc010ujl.1_Missense_Mutation_p.E91K|DIS3L_uc002app.2_Missense_Mutation_p.E378K|DIS3L_uc002apq.2_Missense_Mutation_p.E461K|DIS3L_uc010bho.2_Missense_Mutation_p.E327K	NM_001143688	NP_001137160	Q8TF46	DI3L1_HUMAN	DIS3 mitotic control homolog (S.	461					rRNA catabolic process	cytoplasm|exosome (RNase complex)	exonuclease activity|protein binding|ribonuclease activity|RNA binding			ovary(2)	2						GAGTCCTGAAGAGGAACAAAA	0.428													6	43					0	0	8.12818e-05	0	0
NOX5	79400	broad.mit.edu	37	15	69335039	69335040	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:69335039_69335040GG>AA	uc002ars.1	+	10	1561_1562	c.1541_1542GG>AA	c.(1540-1542)TGG>TAA	p.W514*	NOX5_uc002arp.1_Nonsense_Mutation_p.W496*|NOX5_uc002arq.1_Nonsense_Mutation_p.W468*|NOX5_uc010bid.1_Nonsense_Mutation_p.W479*|NOX5_uc002arr.1_Nonsense_Mutation_p.W486*|NOX5_uc010bie.1_Nonsense_Mutation_p.W314*|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	514	FAD-binding FR-type.|Cytoplasmic (Potential).|C-terminal catalytic region.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						CAAGGCCAGTGGACAAACAGGC	0.545													11	32					0	0	6.4e-05	0	0
STRA6	64220	broad.mit.edu	37	15	74472546	74472546	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:74472546C>T	uc002axk.2	-	19	2061	c.1879G>A	c.(1879-1881)GGA>AGA	p.G627R	STRA6_uc002axi.2_Missense_Mutation_p.G436R|STRA6_uc010ulh.1_Missense_Mutation_p.G665R|STRA6_uc002axj.2_Missense_Mutation_p.G666R|STRA6_uc010bji.2_Missense_Mutation_p.G627R|STRA6_uc002axl.2_Missense_Mutation_p.G559R|STRA6_uc002axm.2_Missense_Mutation_p.G627R|STRA6_uc002axn.2_Missense_Mutation_p.G618R|STRA6_uc010uli.1_Missense_Mutation_p.G664R	NM_022369	NP_071764	Q9BX79	STRA6_HUMAN	stimulated by retinoic acid gene 6 homolog	627	Cytoplasmic (Potential).				adrenal gland development|alveolar primary septum development|developmental growth|diaphragm development|digestive tract morphogenesis|ear development|embryonic camera-type eye formation|embryonic digestive tract development|eyelid development in camera-type eye|face morphogenesis|feeding behavior|female genitalia development|kidney development|lung vasculature development|neuromuscular process|nose morphogenesis|paramesonephric duct development|positive regulation of behavior|pulmonary artery morphogenesis|pulmonary valve morphogenesis|smooth muscle tissue development|transport|uterus morphogenesis|ventricular septum development|vocal learning	integral to membrane|plasma membrane|protein complex	receptor activity			central_nervous_system(1)	1						GGCCTAGCTCCCTTGGCCATG	0.637													29	168					0	0	0.000814825	0	0
SLC28A1	9154	broad.mit.edu	37	15	85461754	85461754	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:85461754G>A	uc002blg.2	+	10	998	c.796_splice	c.e10-1	p.V266_splice	SLC28A1_uc010upd.1_Splice_Site_p.V188_splice|SLC28A1_uc010bnb.2_Splice_Site_p.V266_splice|SLC28A1_uc010upe.1_Splice_Site_p.V266_splice|SLC28A1_uc010upf.1_Splice_Site_p.V266_splice|SLC28A1_uc010upg.1_Splice_Site_p.V266_splice	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1						nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CTTCCCGGCAGGTTCTGCCCA	0.592													23	148					0	0	0.000720815	0	0
RHCG	51458	broad.mit.edu	37	15	90023616	90023616	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:90023616C>T	uc002bnz.2	-	4	570	c.546G>A	c.(544-546)ATG>ATA	p.M182I	RHCG_uc002bny.2_5'Flank|RHCG_uc002boa.2_RNA|RHCG_uc010bnq.1_Missense_Mutation_p.M66I	NM_016321	NP_057405	Q9UBD6	RHCG_HUMAN	Rh family, C glycoprotein	182	Helical; (Potential).				amine transport|cellular ion homeostasis|epithelial cell differentiation|transepithelial ammonium transport	apical plasma membrane|basolateral plasma membrane|cytoplasmic vesicle|integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			kidney(1)	1	Lung NSC(78;0.0237)|all_lung(78;0.0478)					TGTGGATGGTCATGGAGCCTC	0.577													13	130					0	0	0.000151284	0	0
WDR93	56964	broad.mit.edu	37	15	90276242	90276242	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:90276242C>T	uc002boj.2	+	13	1437	c.1336C>T	c.(1336-1338)CCT>TCT	p.P446S	WDR93_uc010bnr.2_Intron|WDR93_uc010upz.1_Missense_Mutation_p.P163S	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	446	WD.				electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			TCTAGGATTCCCTCTTGGGGT	0.512													18	160					0	0	0.000958276	0	0
SPATA8	145946	broad.mit.edu	37	15	97326937	97326937	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:97326937G>A	uc002bue.2	+	1	262	c.52G>A	c.(52-54)GAA>AAA	p.E18K	uc010uro.1_5'Flank|uc010urp.1_5'Flank|uc002bud.1_5'Flank	NM_173499	NP_775770	Q6RVD6	SPAT8_HUMAN	spermatogenesis associated 8	18										ovary(1)|skin(1)	2	Melanoma(26;0.0142)|Lung NSC(78;0.041)|all_lung(78;0.0468)		OV - Ovarian serous cystadenocarcinoma(32;0.0718)			TCTCTACCAGGAAATTGCCCC	0.552													11	63					0	0	0.000673444	0	0
LRRC28	123355	broad.mit.edu	37	15	99926274	99926275	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:99926274_99926275CC>AA	uc002bva.1	+	10	1226_1227	c.1071_1072CC>AA	c.(1069-1074)ACCCAG>ACAAAG	p.Q358K	LRRC28_uc002bvb.1_Missense_Mutation_p.Q204K|LRRC28_uc010urt.1_Missense_Mutation_p.Q172K|LRRC28_uc002bvc.1_Missense_Mutation_p.P304Q|LRRC28_uc010uru.1_Missense_Mutation_p.Q289K|LRRC28_uc002bvd.1_Missense_Mutation_p.Q84K	NM_144598	NP_653199	Q86X40	LRC28_HUMAN	leucine rich repeat containing 28	358											0	Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00106)			GCTGCTCCACCCAGTGTCTGCA	0.49													13	548					0	0	6.4e-05	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100821446	100821446	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr15:100821446G>A	uc002bvv.1	-	4	856	c.777C>T	c.(775-777)ACC>ACT	p.T259T	ADAMTS17_uc002bvx.1_Silent_p.T16T	NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	259	Peptidase M12B.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		TGTTCATGACGGTCAGGATGA	0.627													10	104					0	0	6.40141e-05	0	0
HN1L	90861	broad.mit.edu	37	16	1748899	1748899	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr16:1748899C>T	uc002cmg.2	+	5	509	c.473C>T	c.(472-474)CCC>CTC	p.P158L	HN1L_uc010uvi.1_Missense_Mutation_p.P186L|HN1L_uc010brt.2_RNA|HN1L_uc010bru.2_3'UTR|HN1L_uc010uvj.1_3'UTR|HN1L_uc010uvk.1_Missense_Mutation_p.P145L	NM_144570	NP_653171	Q9H910	HN1L_HUMAN	hematological and neurological expressed 1-like	158						cytoplasm|nucleus				upper_aerodigestive_tract(1)	1						GAGCCCATGCCCACAGTCGAC	0.632													23	92					0	0	0.000295444	0	0
KIAA0430	9665	broad.mit.edu	37	16	15702291	15702291	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr16:15702291G>A	uc002ddr.2	-	21	4232	c.4039C>T	c.(4039-4041)CTT>TTT	p.L1347F	KIAA0430_uc002ddq.2_Missense_Mutation_p.L1181F|KIAA0430_uc010uzv.1_Missense_Mutation_p.L1343F|KIAA0430_uc010uzw.1_Missense_Mutation_p.L1346F	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	1346						peroxisome	nucleotide binding|RNA binding				0						TGGGACCGAAGGAGTTTAACA	0.413													16	74					0	0	0.000958276	0	0
TMC7	79905	broad.mit.edu	37	16	19051753	19051753	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr16:19051753G>A	uc002dfq.2	+	9	1452	c.1322G>A	c.(1321-1323)CGT>CAT	p.R441H	TMC7_uc010vao.1_3'UTR|TMC7_uc002dfp.2_Missense_Mutation_p.R441H|TMC7_uc010vap.1_Missense_Mutation_p.R331H	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	441	Cytoplasmic (Potential).					integral to membrane				skin(2)|ovary(1)	3						TTTGAGATCCGTCTGACAATC	0.284													29	76					0	0	0.000184323	0	0
OTOA	146183	broad.mit.edu	37	16	21728346	21728346	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr16:21728346A>T	uc002djh.2	+	14	1608	c.1607A>T	c.(1606-1608)GAT>GTT	p.D536V	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.D457V|OTOA_uc002dji.2_Missense_Mutation_p.D212V|OTOA_uc010vbk.1_Missense_Mutation_p.D184V	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	550					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		GTCCTGAAGGATAAGGAACTT	0.433													8	61					0	0	0.000673444	0	0
GTF3C1	2975	broad.mit.edu	37	16	27499675	27499675	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr16:27499675C>T	uc002dov.1	-	23	3613	c.3573G>A	c.(3571-3573)TGG>TGA	p.W1191*	GTF3C1_uc002dou.2_Nonsense_Mutation_p.W1191*	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1191						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						ACTGCTCTTCCCAGCCAGCAC	0.562													36	190					0	0	0.000228196	0	0
XPO6	23214	broad.mit.edu	37	16	28117463	28117463	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr16:28117463G>A	uc002dpa.1	-	20	3186	c.2685C>T	c.(2683-2685)ATC>ATT	p.I895I	XPO6_uc002dpb.1_Silent_p.I881I|XPO6_uc010vcp.1_Silent_p.I895I	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	895					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						CCACCTGCAGGATCTTCAGAA	0.592													21	49					0	0	0.000229342	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29907154	29907155	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr16:29907154_29907155CC>TT	uc002duq.3	-	4	778_779	c.538_539GG>AA	c.(538-540)GGC>AAC	p.G180N	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Missense_Mutation_p.G110N|SEZ6L2_uc002dur.3_Missense_Mutation_p.G110N|SEZ6L2_uc002dus.3_Intron|SEZ6L2_uc010vec.1_Missense_Mutation_p.G180N|SEZ6L2_uc010ved.1_Missense_Mutation_p.G136N	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	180	CUB 1.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						ATACCCTTCGCCCTCGGAGATG	0.569													7	81					0	0	6.4e-05	0	0
IRX5	10265	broad.mit.edu	37	16	54967726	54967726	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr16:54967726C>T	uc002ehv.2	+	3	1393	c.1393C>T	c.(1393-1395)CAG>TAG	p.Q465*	IRX5_uc002ehw.2_Nonsense_Mutation_p.Q399*	NM_005853	NP_005844	P78411	IRX5_HUMAN	iroquois homeobox protein 5	465					response to stimulus|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|vitamin D binding				0						GAGCCAGTCTCAGCTAGACCT	0.488													35	82					0	0	0.000374591	0	0
CCDC135	84229	broad.mit.edu	37	16	57764843	57764843	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr16:57764843G>A	uc002emi.2	+	17	2481	c.2392G>A	c.(2392-2394)GAG>AAG	p.E798K	CCDC135_uc002emj.2_Missense_Mutation_p.E798K|CCDC135_uc002emk.2_Missense_Mutation_p.E733K	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	798	Potential.					cytoplasm				central_nervous_system(1)	1						ATGACCACAGGAGACCCAGGA	0.572													4	47					0	0	0.000602214	0	0
HYDIN	54768	broad.mit.edu	37	16	70989289	70989289	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr16:70989289C>T	uc002ezr.2	-	40	6430	c.6302G>A	c.(6301-6303)GGA>GAA	p.G2101E		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2102										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGCCTCCTCTCCTTCCTTCAC	0.567													8	21					0	0	0.000274275	0	0
ATP2C2	9914	broad.mit.edu	37	16	84486767	84486767	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr16:84486767G>A	uc002fhx.2	+	19	1944	c.1855G>A	c.(1855-1857)GGG>AGG	p.G619R	ATP2C2_uc010chj.2_Missense_Mutation_p.G619R|ATP2C2_uc002fhy.2_Missense_Mutation_p.G636R|ATP2C2_uc002fhz.2_Missense_Mutation_p.G468R	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	619	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						CCTGTGCAACGGGAAGCTGCA	0.672													9	26					0	0	0.000274275	0	0
SCARF1	8578	broad.mit.edu	37	17	1538734	1538734	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:1538734C>T	uc002fsz.1	-	11	1861	c.1811G>A	c.(1810-1812)CGA>CAA	p.R604Q	SCARF1_uc002fsy.1_3'UTR|SCARF1_uc002fta.1_RNA|SCARF1_uc010cjv.1_Missense_Mutation_p.R518Q	NM_003693	NP_003684	Q14162	SREC_HUMAN	scavenger receptor class F, member 1 isoform 1	604	Pro/Ser-rich.|Cytoplasmic (Potential).				cell adhesion|neuron remodeling|positive regulation of axon regeneration|receptor-mediated endocytosis	integral to membrane	low-density lipoprotein particle binding|scavenger receptor activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		CCCTGAGCTTCGGCGACTCTG	0.677													14	64					0	0	0.000308642	0	0
EFNB3	1949	broad.mit.edu	37	17	7608943	7608943	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:7608943G>A	uc002gis.2	+	1	424	c.27G>A	c.(25-27)GGG>GGA	p.G9G		NM_001406	NP_001397	Q15768	EFNB3_HUMAN	ephrin-B3 precursor	9					cell-cell signaling|interspecies interaction between organisms	integral to plasma membrane	ephrin receptor binding|transmembrane-ephrin receptor activity			ovary(1)	1		all_cancers(10;1.14e-06)|Prostate(122;0.081)				CTGGGCCGGGGGGCGTGCGAG	0.711													9	12					0	0	0.000442599	0	0
MYH8	4626	broad.mit.edu	37	17	10293814	10293814	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:10293814C>T	uc002gmm.2	-	40	5866	c.5771G>A	c.(5770-5772)CGA>CAA	p.R1924Q	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1924	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						GCTCTTCACTCGCAATTTGTT	0.468									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				26	152					0	0	0.000586117	0	0
MYH8	4626	broad.mit.edu	37	17	10299683	10299683	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:10299683C>T	uc002gmm.2	-	33	4712	c.4617G>A	c.(4615-4617)GAG>GAA	p.E1539E	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1539	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TTTCACATTTCTCTTGTTCTA	0.373									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				8	33					0	0	0.000442599	0	0
MYH4	4622	broad.mit.edu	37	17	10360795	10360795	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:10360795C>T	uc002gmn.2	-	16	1950	c.1839G>A	c.(1837-1839)CAG>CAA	p.Q613Q	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	613	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TTGCAGACTTCTGGTACAGCC	0.498													5	15					0	0	0.000602214	0	0
MYH3	4621	broad.mit.edu	37	17	10551931	10551931	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:10551931G>A	uc002gmq.1	-	7	755	c.678C>T	c.(676-678)CCC>CCT	p.P226P		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	226	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						CCTCCAGCAGGGGATTGGCAC	0.398													19	69					0	0	0.000375601	0	0
Unknown	0	broad.mit.edu	37	17	16734769	16734769	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:16734769C>T	uc010vwr.1	-	3	806	c.364G>A	c.(364-366)GAA>AAA	p.E122K						SubName: Full=cDNA FLJ53570, highly similar to Keratin, type I cytoskeletal 16;																		TTCAGGCCTTCCATCTGCATC	0.632													7	50					0	0	0.000442599	0	0
FBXW10	10517	broad.mit.edu	37	17	18673257	18673257	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:18673257C>T	uc002guk.2	+	11	2097	c.1865C>T	c.(1864-1866)TCC>TTC	p.S622F	FBXW10_uc002guj.2_Missense_Mutation_p.S622F|FBXW10_uc002gul.2_Missense_Mutation_p.S651F|FBXW10_uc010cqh.1_Intron	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	622	WD 7.									ovary(1)	1						CTCGACGTGTCCCTTCTCTTC	0.507													30	136					0	0	0.000409698	0	0
FBXW10	10517	broad.mit.edu	37	17	18682444	18682444	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:18682444G>A	uc002guk.2	+	14	3224	c.2992G>A	c.(2992-2994)GAA>AAA	p.E998K	FBXW10_uc002guj.2_Missense_Mutation_p.E997K|FBXW10_uc002gul.2_Missense_Mutation_p.E1007K|FBXW10_uc010cqh.1_Missense_Mutation_p.E945K|FAM18B_uc002gum.2_5'Flank	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	998	Potential.									ovary(1)	1						GGAGCACCAGGAAGCCAAGAT	0.502													17	71					0	0	0.00074312	0	0
Unknown	0	broad.mit.edu	37	17	21731144	21731144	+	Missense_Mutation	SNP	T	G	G	rs149119138	by1000genomes	TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:21731144T>G	uc002gyy.3	+	2	571	c.446T>G	c.(445-447)CTG>CGG	p.L149R						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		GTCCTGCGTCTGAGAGGTGGT	0.542													4	57					0	0	0.00024832	0	0
SLFN13	146857	broad.mit.edu	37	17	33772553	33772553	+	Silent	SNP	G	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:33772553G>C	uc002hjk.1	-	1	477	c.147C>G	c.(145-147)GCC>GCG	p.A49A	SLFN13_uc010wch.1_Silent_p.A49A|SLFN13_uc002hjl.2_Silent_p.A49A|SLFN13_uc010ctt.2_Intron|SLFN13_uc002hjm.2_5'UTR	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	49						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		AAGCACACGCGGCCCGTATAA	0.483													19	90					0	0	0.000132079	0	0
KRT12	3859	broad.mit.edu	37	17	39021204	39021204	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:39021204C>T	uc002hvk.2	-	3	685	c.661G>A	c.(661-663)GAA>AAA	p.E221K		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	221	Rod.|Coil 1B.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				AGGGCCAGTTCATTCTCATAC	0.537													6	40					0	0	8.12818e-05	0	0
KRT36	8689	broad.mit.edu	37	17	39646023	39646023	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:39646023G>A	uc002hwt.2	-	1	94	c.94C>T	c.(94-96)CGT>TGT	p.R32C		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	32	Head.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				CCCACAGAACGGATGGAGGAC	0.637													8	46					0	0	0.000157383	0	0
GPATCH8	23131	broad.mit.edu	37	17	42477247	42477247	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:42477247G>A	uc002igw.1	-	8	2262	c.2198C>T	c.(2197-2199)CCA>CTA	p.P733L	GPATCH8_uc002igv.1_Missense_Mutation_p.P655L|GPATCH8_uc010wiz.1_Missense_Mutation_p.P655L	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	733						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		AGGGGGTTCTGGTTTGGGTCC	0.542													11	62					0	0	6.40141e-05	0	0
GFAP	2670	broad.mit.edu	37	17	42992741	42992741	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:42992741G>A	uc002ihq.2	-	1	174	c.114C>T	c.(112-114)TCC>TCT	p.S38S	GFAP_uc002ihr.2_Silent_p.S38S|GFAP_uc010wjg.1_RNA	NM_002055	NP_002046	P14136	GFAP_HUMAN	glial fibrillary acidic protein isoform 1	38	Head.					cytoplasm|intermediate filament	structural constituent of cytoskeleton			ovary(1)|pancreas(1)	2		Prostate(33;0.0959)				TTCGAGCCAGGGAGAGGCGGG	0.692													17	19					0	0	0.000375601	0	0
KIAA1267	284058	broad.mit.edu	37	17	44108899	44108899	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:44108899G>A	uc002ikb.2	-	14	3346	c.3261C>T	c.(3259-3261)CCC>CCT	p.P1087P	KIAA1267_uc002ikc.2_Silent_p.P1087P|KIAA1267_uc002ikd.2_Silent_p.P1087P|KIAA1267_uc010dav.2_Silent_p.P1086P|KIAA1267_uc010wkb.1_Silent_p.P418P|KIAA1267_uc010wkc.1_Silent_p.P355P	NM_015443	NP_056258	Q7Z3B3	K1267_HUMAN	hypothetical protein LOC284058	1087						MLL1 complex	protein binding			skin(2)	2		Melanoma(429;0.211)				GACTCTTGAGGGGGACAATGG	0.617													5	50					0	0	8.12818e-05	0	0
OSBPL7	114881	broad.mit.edu	37	17	45892594	45892594	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:45892594G>A	uc002ilx.1	-	13	1447	c.1244C>T	c.(1243-1245)TCT>TTT	p.S415F	OSBPL7_uc002ilw.1_5'UTR	NM_145798	NP_665741	Q9BZF2	OSBL7_HUMAN	oxysterol-binding protein-like protein 7	415					lipid transport		lipid binding				0						ATTCTCAGAAGAGCTGGCGGA	0.602													4	31					0	0	0.000602214	0	0
HOXB6	3216	broad.mit.edu	37	17	46673918	46673918	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:46673918C>T	uc002ins.1	-	4	857	c.532G>A	c.(532-534)GAG>AAG	p.E178K	HOXB5_uc002inr.2_5'Flank|HOXB6_uc010dbh.1_Missense_Mutation_p.E178K|HOXB6_uc002int.1_3'UTR	NM_018952	NP_061825	P17509	HXB6_HUMAN	homeobox B6	178	Homeobox.				anterior/posterior axis specification, embryo	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGCGCGATCTCGATGCGCCGC	0.602													16	235					0	0	0.000132079	0	0
PDK2	5164	broad.mit.edu	37	17	48185985	48185985	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:48185985C>T	uc002iqc.2	+	9	975	c.871C>T	c.(871-873)CGA>TGA	p.R291*	PDK2_uc002iqb.2_Nonsense_Mutation_p.R227*	NM_002611	NP_002602	Q15119	PDK2_HUMAN	pyruvate dehydrogenase kinase 2 precursor	291	Histidine kinase.				glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|nucleus	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			central_nervous_system(3)	3						GATGAGTGACCGAGGTGGGGG	0.592									Autosomal_Dominant_Polycystic_Kidney_Disease				31	15					0	0	0.000409698	0	0
HELZ	9931	broad.mit.edu	37	17	65174871	65174871	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:65174871G>A	uc010wqk.1	-	13	1521	c.1334C>T	c.(1333-1335)TCC>TTC	p.S445F	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Missense_Mutation_p.S445F	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					GTCTAAAACGGACTGAGTAAA	0.373													37	68					0	0	0.000228196	0	0
KPNA2	3838	broad.mit.edu	37	17	66038420	66038421	+	Missense_Mutation	DNP	CC	AA	AA	rs149130880		TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:66038420_66038421CC>AA	uc002jgk.2	+	5	654_655	c.522_523CC>AA	c.(520-525)CCCCAT>CCAAAT	p.H175N	KPNA2_uc002jgl.2_Missense_Mutation_p.H175N	NM_002266	NP_002257	P52292	IMA2_HUMAN	karyopherin alpha 2	175	NLS binding site (major) (By similarity).|ARM 3.				DNA metabolic process|G2 phase of mitotic cell cycle|interspecies interaction between organisms|M phase specific microtubule process|NLS-bearing substrate import into nucleus|regulation of DNA recombination	cytoplasm|nuclear pore|nucleoplasm	histone deacetylase binding|nuclear localization sequence binding|protein transporter activity			central_nervous_system(2)	2	all_cancers(12;1.18e-09)		BRCA - Breast invasive adenocarcinoma(8;1.03e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			TGGCATCTCCCCATGCTCACAT	0.455													19	798					0	0	6.4e-05	0	0
KPNA2	3838	broad.mit.edu	37	17	66039038	66039039	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:66039038_66039039CG>AT	uc002jgk.2	+	6	721_722	c.589_590CG>AT	c.(589-591)CGA>ATA	p.R197I	KPNA2_uc002jgl.2_Missense_Mutation_p.R197I	NM_002266	NP_002257	P52292	IMA2_HUMAN	karyopherin alpha 2	197	NLS binding site (major) (By similarity).				DNA metabolic process|G2 phase of mitotic cell cycle|interspecies interaction between organisms|M phase specific microtubule process|NLS-bearing substrate import into nucleus|regulation of DNA recombination	cytoplasm|nuclear pore|nucleoplasm	histone deacetylase binding|nuclear localization sequence binding|protein transporter activity			central_nervous_system(2)	2	all_cancers(12;1.18e-09)		BRCA - Breast invasive adenocarcinoma(8;1.03e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			CTCAGTGTTCCGAGACTTGGTT	0.287													14	688					0	0	6.4e-05	0	0
ABCA5	23461	broad.mit.edu	37	17	67302982	67302982	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:67302982G>A	uc002jif.2	-	5	1890	c.672C>T	c.(670-672)TAC>TAT	p.Y224Y	ABCA5_uc002jig.2_Silent_p.Y224Y|ABCA5_uc002jih.2_Silent_p.Y224Y|ABCA5_uc010dfe.2_Silent_p.Y224Y	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	224	Helical; (Potential).				cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					CTATAACTAGGTATATTAAAA	0.323													11	13					0	0	0.00010058	0	0
CDC42EP4	23580	broad.mit.edu	37	17	71281609	71281609	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:71281609G>A	uc002jjn.2	-	2	1178	c.1031C>T	c.(1030-1032)TCC>TTC	p.S344F	CDC42EP4_uc002jjo.2_Missense_Mutation_p.S344F|CDC42EP4_uc002jjp.1_Missense_Mutation_p.S274F	NM_012121	NP_036253	Q9H3Q1	BORG4_HUMAN	Cdc42 effector protein 4	344					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|cytoplasm|endomembrane system|membrane|microtubule cytoskeleton	GTP-Rho binding				0			LUSC - Lung squamous cell carcinoma(166;0.0352)|Lung(188;0.0711)			ATCCATGAAGGAGAACTCCTT	0.647													15	120					0	0	0.000566183	0	0
MRPL38	64978	broad.mit.edu	37	17	73898149	73898149	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:73898149C>T	uc010wso.1	-	3	559	c.334G>A	c.(334-336)GAG>AAG	p.E112K	FBF1_uc002jqa.1_RNA|MRPL38_uc002jpz.1_RNA	NM_032478	NP_115867	Q96DV4	RM38_HUMAN	mitochondrial ribosomal protein L38 precursor	112	Potential.					actin cytoskeleton|mitochondrion|ribosome				pancreas(1)	1			all cancers(21;0.000154)|Epithelial(20;0.000156)|BRCA - Breast invasive adenocarcinoma(9;0.00936)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCCCGAAGCTCCTGGATGGCC	0.597													23	14					0	0	0.000720815	0	0
CCDC40	55036	broad.mit.edu	37	17	78022387	78022387	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:78022387C>T	uc010dht.2	+	5	709	c.682C>T	c.(682-684)CCC>TCC	p.P228S	CCDC40_uc010wub.1_Missense_Mutation_p.P228S|CCDC40_uc002jxm.3_Missense_Mutation_p.P11S	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	228					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			CCCAGTGATCCCCCCAGGGGT	0.627													31	24					0	0	0.000409698	0	0
SLC16A3	9123	broad.mit.edu	37	17	80196792	80196792	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr17:80196792C>T	uc002kea.2	+	5	1477	c.1338C>T	c.(1336-1338)TTC>TTT	p.F446F	SLC16A3_uc002kee.2_Intron|SLC16A3_uc002keb.2_Silent_p.F446F|SLC16A3_uc002kec.2_Silent_p.F446F|SLC16A3_uc002ked.2_Silent_p.F446F	NM_001042422	NP_001035887	O15427	MOT4_HUMAN	solute carrier family 16, member 3	446	Cytoplasmic (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	actin cytoskeleton|integral to plasma membrane|membrane fraction|nuclear membrane	secondary active monocarboxylate transmembrane transporter activity|symporter activity			upper_aerodigestive_tract(1)|lung(1)	2	Breast(20;0.00285)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0149)		Pyruvic acid(DB00119)	TGGAGCATTTCCTGAAGGCTG	0.642													64	73					0	0	0.000781405	0	0
TYMS	7298	broad.mit.edu	37	18	672884	672885	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr18:672884_672885CC>GT	uc010dka.1	+	7	968_969	c.829_830CC>GT	c.(829-831)CCA>GTA	p.P277V	TYMS_uc010dkb.1_Missense_Mutation_p.P243V|TYMS_uc010dkc.1_Missense_Mutation_p.P194V|ENOSF1_uc002kkt.3_3'UTR|ENOSF1_uc010dke.2_RNA	NM_001071	NP_001062	P04818	TYSY_HUMAN	thymidylate synthase	277					DNA repair|DNA replication|phosphatidylinositol-mediated signaling|pyrimidine base metabolic process|pyrimidine nucleoside biosynthetic process|regulation of transcription involved in G1/S phase of mitotic cell cycle|response to organophosphorus	cytosol	thymidylate synthase activity				0					Capecitabine(DB01101)|Floxuridine(DB00322)|Fluorouracil(DB00544)|Gemcitabine(DB00441)|Leucovorin(DB00650)|Pemetrexed(DB00642)|Raltitrexed(DB00293)|Trifluridine(DB00432)	CAGACCTTTCCCAAAGCTCAGG	0.386													10	88					0	0	6.4e-05	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887203	9887203	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr18:9887203C>T	uc002koi.3	+	2	1176	c.727C>T	c.(727-729)CCA>TCA	p.P243S	TXNDC2_uc010wzq.1_Intron|TXNDC2_uc002koh.3_Missense_Mutation_p.P176S	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	243	9.|22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						CCCCAAGTCCCCAGAAGAAAC	0.572													9	44					0	0	0.000673444	0	0
MC5R	4161	broad.mit.edu	37	18	13826735	13826736	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr18:13826735_13826736GG>AA	uc010xaf.1	+	1	971_972	c.971_972GG>AA	c.(970-972)AGG>AAA	p.R324K		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	324	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						TTTCCCAGAAGGGATTAAGCAC	0.525													15	95					0	0	6.4e-05	0	0
MYO5B	4645	broad.mit.edu	37	18	47516876	47516876	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr18:47516876C>T	uc002leb.2	-	7	1059	c.771G>A	c.(769-771)AGG>AGA	p.R257R	MYO5B_uc002lec.1_Silent_p.R256R	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	257	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TGTGGTAATTCCTCTCATCAT	0.502													6	14					0	0	3.59834e-05	0	0
DSEL	92126	broad.mit.edu	37	18	65181271	65181271	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr18:65181271C>T	uc002lke.1	-	2	1829	c.605G>A	c.(604-606)CGA>CAA	p.R202Q		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	192						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				TTTTTGTCTTCGATGATTATC	0.398													9	54					0	0	0.000673444	0	0
TSHZ1	10194	broad.mit.edu	37	18	72998840	72998840	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr18:72998840C>T	uc002lly.2	+	2	1906	c.1343C>T	c.(1342-1344)TCC>TTC	p.S448F		NM_005786	NP_005777	Q6ZSZ6	TSH1_HUMAN	teashirt family zinc finger 1	493						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Esophageal squamous(42;0.129)|Prostate(75;0.142)|Melanoma(33;0.211)		Colorectal(1;0.000501)|READ - Rectum adenocarcinoma(2;0.00226)|BRCA - Breast invasive adenocarcinoma(31;0.246)		CCCGCGGGGTCCACGACTTCT	0.597													20	58					0	0	0.000175454	0	0
HCN2	610	broad.mit.edu	37	19	603747	603747	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:603747C>T	uc002lpe.2	+	2	889	c.836C>T	c.(835-837)CCC>CTC	p.P279L		NM_001194	NP_001185	Q9UL51	HCN2_HUMAN	hyperpolarization activated cyclic	279	Cytoplasmic (Potential).				cell-cell signaling|muscle contraction	voltage-gated potassium channel complex	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ATCCTGGACCCCGAGAAGATC	0.537													13	51					0	0	0.000308642	0	0
APC2	10297	broad.mit.edu	37	19	1468588	1468588	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:1468588G>A	uc002lsr.1	+	15	5496	c.5288G>A	c.(5287-5289)GGG>GAG	p.G1763E	APC2_uc002lss.1_Missense_Mutation_p.G1345E|APC2_uc002lst.1_Missense_Mutation_p.G1763E|APC2_uc002lsu.1_Missense_Mutation_p.G1762E|C19orf25_uc010xgn.1_Intron	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	1763					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGACCAGCGGGAGCCCCCGT	0.672													3	6					0	0	0.00024832	0	0
ZNF554	115196	broad.mit.edu	37	19	2832352	2832352	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:2832352C>T	uc002lwm.2	+	4	503	c.305C>T	c.(304-306)TCC>TTC	p.S102F	ZNF554_uc002lwl.2_Missense_Mutation_p.S51F	NM_001102651	NP_001096121	Q86TJ5	ZN554_HUMAN	zinc finger protein 554	102	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTCCACTTTCCCCAGCACAA	0.438													23	117					0	0	0.00047179	0	0
PTPRS	5802	broad.mit.edu	37	19	5238961	5238961	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:5238961G>A	uc002mbv.2	-	13	2052	c.1818C>T	c.(1816-1818)ACC>ACT	p.T606T	PTPRS_uc002mbu.1_Silent_p.T593T|PTPRS_uc010xin.1_Silent_p.T593T|PTPRS_uc002mbw.2_Silent_p.T593T|PTPRS_uc002mbx.2_Silent_p.T597T|PTPRS_uc002mby.2_Silent_p.T593T	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	606	Extracellular (Potential).|Fibronectin type-III 3.				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		GCACCACGGGGGTGAAGGCGC	0.721													15	38					0	0	0.000219431	0	0
KHSRP	8570	broad.mit.edu	37	19	6418740	6418740	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:6418740C>T	uc002mer.3	-	8	863	c.753G>A	c.(751-753)AAG>AAA	p.K251K		NM_003685	NP_003676	Q92945	FUBP2_HUMAN	KH-type splicing regulatory protein	251	Gly-rich.|KH 2.				mRNA processing|mRNA transport|regulation of transcription, DNA-dependent|RNA splicing, via transesterification reactions|transcription, DNA-dependent	cytosol|nucleus	DNA binding|protein binding|RNA binding			skin(1)	1						TCTCCCCGCCCTTGCCAATGA	0.672													8	62					0	0	0.000673444	0	0
FBN3	84467	broad.mit.edu	37	19	8153023	8153023	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:8153023C>T	uc002mjf.2	-	51	6438	c.6417G>A	c.(6415-6417)GGG>GGA	p.G2139G	FBN3_uc002mje.2_5'UTR	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2139	EGF-like 34; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TGGTGCATGTCCCTTGCCCAC	0.607													13	66					0	0	0.000958276	0	0
MUC16	94025	broad.mit.edu	37	19	9060133	9060133	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:9060133C>T	uc002mkp.2	-	3	27517	c.27313G>A	c.(27313-27315)GGG>AGG	p.G9105R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9107	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGTGGGTCCCTGACATAAAA	0.478													15	21					0	0	0.000308642	0	0
MUC16	94025	broad.mit.edu	37	19	9062451	9062451	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:9062451C>T	uc002mkp.2	-	3	25199	c.24995G>A	c.(24994-24996)AGA>AAA	p.R8332K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8334	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTGGTCAGTCTCTCATGGGA	0.498													14	49					0	0	0.000958276	0	0
MUC16	94025	broad.mit.edu	37	19	9068756	9068756	+	Silent	SNP	T	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:9068756T>A	uc002mkp.2	-	3	18894	c.18690A>T	c.(18688-18690)ACA>ACT	p.T6230T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6232	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAGGTGAGGTTGTCACAAGGA	0.488													8	51					0	0	0.000274275	0	0
ZNF560	147741	broad.mit.edu	37	19	9578369	9578369	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:9578369G>A	uc002mlp.1	-	10	1464	c.1254C>T	c.(1252-1254)GGC>GGT	p.G418G	ZNF560_uc010dwr.1_Silent_p.G312G	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	418	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						GTTCAATAAGGCCTGCAGATG	0.433													5	9					0	0	0.000602214	0	0
FARSA	2193	broad.mit.edu	37	19	13041110	13041110	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:13041110G>A	uc002mvs.2	-	4	478	c.430C>T	c.(430-432)CGG>TGG	p.R144W	FARSA_uc002mvt.2_RNA|FARSA_uc010xmv.1_Missense_Mutation_p.R144W|FARSA_uc010dyy.1_Missense_Mutation_p.R65W	NM_004461	NP_004452	Q9Y285	SYFA_HUMAN	phenylalanyl-tRNA synthetase, alpha subunit	144					phenylalanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|phenylalanine-tRNA ligase activity|protein binding|tRNA binding			ovary(1)	1					L-Phenylalanine(DB00120)	TGTCCCCCCCGGACCAGCTGG	0.652													9	39					0	0	0.000442599	0	0
OR1I1	126370	broad.mit.edu	37	19	15197931	15197931	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:15197931G>A	uc010xoe.1	+	1	55	c.55G>A	c.(55-57)GAA>AAA	p.E19K		NM_001004713	NP_001004713	O60431	OR1I1_HUMAN	olfactory receptor, family 1, subfamily I,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3						GGGACTCTCAGAAAAGCCAGA	0.468													12	56					0	0	0.00010058	0	0
B3GNT3	10331	broad.mit.edu	37	19	17922825	17922825	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:17922825G>A	uc002nhk.1	+	3	1098	c.1013G>A	c.(1012-1014)CGA>CAA	p.R338Q	B3GNT3_uc002nhl.1_Missense_Mutation_p.R338Q|B3GNT3_uc010ebd.1_Missense_Mutation_p.R338Q|B3GNT3_uc010ebe.1_Missense_Mutation_p.R338Q	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	338	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						TGCTTCTACCGAGACCTGCTG	0.612													29	116					0	0	0.000227799	0	0
GDF15	9518	broad.mit.edu	37	19	18497249	18497249	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:18497249C>T	uc002niv.2	+	1	282	c.250C>T	c.(250-252)CCT>TCT	p.P84S	hsa-mir-3189|MI0014233_5'Flank	NM_004864	NP_004855	Q99988	GDF15_HUMAN	growth differentiation factor 15	84					cell-cell signaling|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			central_nervous_system(1)	1						CGTCCCGGCCCCTGCAGTCCG	0.577													5	27					0	0	0.000602214	0	0
NCAN	1463	broad.mit.edu	37	19	19360700	19360700	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:19360700G>A	uc002nlz.2	+	15	4045	c.3946G>A	c.(3946-3948)GAC>AAC	p.D1316N	NCAN_uc002nma.2_Silent_p.R71R	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	1316					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			CTGGGAGAAGGACGAAGGGAA	0.408													5	12					0	0	0.000602214	0	0
NDUFA13	51079	broad.mit.edu	37	19	19627027	19627027	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:19627027G>A	uc010xqy.1	+	1	488	c.229G>A	c.(229-231)GAA>AAA	p.E77K	TSSK6_uc002nmq.2_5'Flank|TSSK6_uc002nmr.2_5'Flank|NDUFA13_uc002nms.2_Missense_Mutation_p.E77K|NDUFA13_uc010xqx.1_Missense_Mutation_p.E77K	NM_015965	NP_057049	Q9P0J0	NDUAD_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	Error:Variant_position_missing_in_Q9P0J0_after_alignment					apoptotic nuclear change|induction of apoptosis by extracellular signals|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|negative regulation of translation|protein import into nucleus|reactive oxygen species metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I|nucleoplasm	ATP binding|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	CCCGGGACCGGAAGTGTGGGA	0.622													8	48					0	0	0.000442599	0	0
CILP2	148113	broad.mit.edu	37	19	19654772	19654772	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:19654772G>A	uc002nmv.3	+	8	1503	c.1418G>A	c.(1417-1419)GGG>GAG	p.G473E	CILP2_uc002nmw.3_Missense_Mutation_p.G479E	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	473						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						CCCCCTCGGGGGCTGGTCCGG	0.667													4	26					0	0	0.000602214	0	0
TMEM147	10430	broad.mit.edu	37	19	36036708	36036708	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:36036708T>G	uc002oaj.1	+	1	164	c.67T>G	c.(67-69)TGC>GGC	p.C23G	uc010eec.1_5'Flank|uc002oag.2_Intron|TMEM147_uc002oai.1_5'UTR|TMEM147_uc002oak.1_5'UTR	NM_032635	NP_116024	Q9BVK8	TM147_HUMAN	transmembrane protein 147	23						endoplasmic reticulum membrane|integral to membrane	protein binding				0	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			CACCTACAAGTGCAGCGGCCT	0.378													13	44					0	0	0.000566183	0	0
ZFP82	284406	broad.mit.edu	37	19	36884606	36884606	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:36884606G>A	uc002ody.1	-	5	871	c.636C>T	c.(634-636)CAC>CAT	p.H212H		NM_133466	NP_597723	Q8N141	ZFP82_HUMAN	zinc finger protein 82 homolog	212	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						GTCGAGTAAGGTGTGCAGTCT	0.423													12	64					0	0	6.40141e-05	0	0
CYP2B6	1555	broad.mit.edu	37	19	41512885	41512885	+	Missense_Mutation	SNP	G	A	A	rs141530852		TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:41512885G>A	uc002opr.1	+	4	567	c.560G>A	c.(559-561)CGA>CAA	p.R187Q	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Intron	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	187					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	TTTGGAAAACGATTCCACTAC	0.507													11	47					0	0	0.000151284	0	0
TEX101	83639	broad.mit.edu	37	19	43920687	43920687	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:43920687G>T	uc010xwo.1	+	4	566	c.371G>T	c.(370-372)TGG>TTG	p.W124L	TEX101_uc002owk.2_Missense_Mutation_p.W142L	NM_001130011	NP_001123483	Q9BY14	TX101_HUMAN	testis expressed 101 isoform 2	124						anchored to membrane|plasma membrane				ovary(1)	1		Prostate(69;0.0199)				TCTCAGTTTTGGGAGTTCAGT	0.488													32	171					1.08052e-11	1.17904e-10	0.000814825	1	0
CEACAM20	125931	broad.mit.edu	37	19	45028023	45028023	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:45028023C>T	uc010ejn.1	-	3	484	c.468G>A	c.(466-468)GTG>GTA	p.V156V	CEACAM20_uc010ejo.1_Silent_p.V156V|CEACAM20_uc010ejp.1_Silent_p.V156V|CEACAM20_uc010ejq.1_Silent_p.V156V	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	156	Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				ACTCACACTTCACATCCAGGA	0.378													25	189					0	0	0.000586117	0	0
SULT2A1	6822	broad.mit.edu	37	19	48378071	48378071	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:48378071C>T	uc002phr.2	-	5	728	c.588G>A	c.(586-588)GAG>GAA	p.E196E		NM_003167	NP_003158	Q06520	ST2A1_HUMAN	bile-salt sulfotransferase 2A1	196	PAPS.				3'-phosphoadenosine 5'-phosphosulfate metabolic process|bile acid catabolic process|cellular lipid metabolic process|digestion|sulfation|xenobiotic metabolic process	cytosol	bile-salt sulfotransferase activity			ovary(1)|pancreas(1)	2		all_cancers(25;3.02e-09)|all_lung(116;6.48e-07)|all_epithelial(76;7.35e-07)|Lung NSC(112;1.56e-06)|all_neural(266;0.0146)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000254)|all cancers(93;0.000545)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.0552)		GACAGATCTTCTCTATGGTTC	0.264													17	74					0	0	0.000132079	0	0
RASIP1	54922	broad.mit.edu	37	19	49243482	49243482	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:49243482G>A	uc002pki.2	-	2	255	c.58C>T	c.(58-60)CCC>TCC	p.P20S		NM_017805	NP_060275	Q5U651	RAIN_HUMAN	Ras-interacting protein 1	20					signal transduction	Golgi stack|perinuclear region of cytoplasm				pancreas(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.98e-05)|all cancers(93;0.000272)|Epithelial(262;0.0155)|GBM - Glioblastoma multiforme(486;0.0222)		AGGCCCACGGGGAGATGAAGC	0.637													12	48					0	0	0.000151284	0	0
POLD1	5424	broad.mit.edu	37	19	50906833	50906833	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:50906833C>T	uc002psb.3	+	10	1277	c.1221C>T	c.(1219-1221)ATC>ATT	p.I407I	POLD1_uc002psc.3_Silent_p.I407I|POLD1_uc010enx.2_RNA|POLD1_uc010eny.2_Silent_p.I407I	NM_002691	NP_002682	P28340	DPOD1_HUMAN	DNA-directed DNA polymerase delta 1	407					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|DNA synthesis involved in DNA repair|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|response to UV|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm|nucleotide-excision repair complex	3'-5'-exodeoxyribonuclease activity|chromatin binding|DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding|protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2		all_neural(266;0.0571)		OV - Ovarian serous cystadenocarcinoma(262;0.00794)|GBM - Glioblastoma multiforme(134;0.0195)		CGTACCTCATCTCTCGGGCCC	0.637								DNA_polymerases_(catalytic_subunits)					30	71					0	0	0.000409698	0	0
ZNF610	162963	broad.mit.edu	37	19	52857508	52857508	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:52857508C>T	uc002pyx.3	+	5	601	c.195C>T	c.(193-195)ATC>ATT	p.I65I	ZNF610_uc002pyy.3_Silent_p.I65I|ZNF610_uc002pyz.3_Intron|ZNF610_uc002pza.2_Silent_p.I65I	NM_001161426	NP_001154898	Q8N9Z0	ZN610_HUMAN	zinc finger protein 610 isoform a	65	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3				OV - Ovarian serous cystadenocarcinoma(262;0.00396)|GBM - Glioblastoma multiforme(134;0.00434)		TAACAGGAATCTGTCTTCCTG	0.388													6	59					0	0	8.12818e-05	0	0
ZNF677	342926	broad.mit.edu	37	19	53740999	53740999	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:53740999G>A	uc002qbf.1	-	5	1166	c.981C>T	c.(979-981)GTC>GTT	p.V327V	ZNF677_uc002qbg.1_Silent_p.V327V	NM_182609	NP_872415	Q86XU0	ZN677_HUMAN	zinc finger protein 677	327	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00352)		TTTGACTACAGACCTTGCCAC	0.413													5	31					0	0	0.000602214	0	0
ZNF845	91664	broad.mit.edu	37	19	53855012	53855012	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:53855012A>G	uc010ydv.1	+	4	1201	c.1084A>G	c.(1084-1086)AAA>GAA	p.K362E	ZNF845_uc010ydw.1_Missense_Mutation_p.K362E	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	362	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGAATGTGACAAAGCTTTCAG	0.388													3	22					0	0	6.4e-05	0	0
ZNF331	55422	broad.mit.edu	37	19	54080376	54080376	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:54080376G>A	uc002qbx.1	+	7	1996	c.562G>A	c.(562-564)GAA>AAA	p.E188K	ZNF331_uc002qby.1_Missense_Mutation_p.E188K|ZNF331_uc002qbz.1_Missense_Mutation_p.E188K|ZNF331_uc002qca.1_Missense_Mutation_p.E188K|ZNF331_uc010eqr.1_Missense_Mutation_p.E188K|ZNF331_uc002qcb.1_Missense_Mutation_p.E188K|ZNF331_uc002qcc.1_Missense_Mutation_p.E188K|ZNF331_uc002qcd.1_Missense_Mutation_p.E188K	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	188	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		GAAGCCCTACGAATGTAAAGA	0.423			T	?	follicular thyroid adenoma								12	81					0	0	0.00010058	0	0
NLRP2	55655	broad.mit.edu	37	19	55494629	55494629	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:55494629G>A	uc002qij.2	+	6	1649	c.1563G>A	c.(1561-1563)GAG>GAA	p.E521E	NLRP2_uc010yfp.1_Silent_p.E498E|NLRP2_uc010esn.2_Silent_p.E497E|NLRP2_uc010eso.2_Silent_p.E518E|NLRP2_uc010esp.2_Silent_p.E499E	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	521	NACHT.|Poly-Glu.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		AGAAGGAGGAGGAAGAGGATA	0.567													12	77					0	0	0.000308642	0	0
NLRP8	126205	broad.mit.edu	37	19	56459545	56459545	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:56459545C>T	uc002qmh.2	+	1	348	c.277C>T	c.(277-279)CCT>TCT	p.P93S	NLRP8_uc010etg.2_Missense_Mutation_p.P93S	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	93	DAPIN.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AGAGCGTTTCCCTGGACGACG	0.507													6	29					0	0	3.59834e-05	0	0
NLRP8	126205	broad.mit.edu	37	19	56487605	56487605	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:56487605G>A	uc002qmh.2	+	8	2883	c.2812G>A	c.(2812-2814)GAT>AAT	p.D938N	NLRP8_uc010etg.2_Missense_Mutation_p.D919N	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	938	LRR 5.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TAGCCTGAAGGATGATGGGGT	0.463													9	34					0	0	0.000442599	0	0
PEG3	5178	broad.mit.edu	37	19	57327719	57327719	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:57327719G>A	uc002qnu.2	-	7	2442	c.2091C>T	c.(2089-2091)AGC>AGT	p.S697S	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.S668S|PEG3_uc002qnv.2_Silent_p.S697S|PEG3_uc002qnw.2_Silent_p.S573S|PEG3_uc002qnx.2_Silent_p.S571S|PEG3_uc010etr.2_Silent_p.S697S	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	697					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TGAGCTCTGAGCTTTGCATGA	0.433													6	35					0	0	3.59834e-05	0	0
ZNF530	348327	broad.mit.edu	37	19	58117970	58117970	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:58117970C>T	uc002qpk.2	+	3	1297	c.1077C>T	c.(1075-1077)TCC>TCT	p.S359S	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	359	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		GTGGAAAATCCTTTAGCCATA	0.448													9	59					0	0	0.000673444	0	0
ZNF132	7691	broad.mit.edu	37	19	58946494	58946494	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr19:58946494G>T	uc002qst.3	-	3	718	c.317C>A	c.(316-318)GCA>GAA	p.A106E		NM_003433	NP_003424	P52740	ZN132_HUMAN	zinc finger protein 132	106	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0171)|Lung(386;0.182)		GGAAGGATCTGCATTAGGGAT	0.488													22	142					2.48779e-11	2.70509e-10	0.000878237	1	0
TPO	7173	broad.mit.edu	37	2	1459887	1459887	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:1459887G>A	uc002qww.2	+	7	743	c.652G>A	c.(652-654)GAG>AAG	p.E218K	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.E218K|TPO_uc002qwr.2_Missense_Mutation_p.E218K|TPO_uc002qwx.2_Missense_Mutation_p.E218K|TPO_uc010yio.1_Missense_Mutation_p.E218K|TPO_uc010yip.1_Missense_Mutation_p.E218K	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	218	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	AGTTTCAAATGAGGTTGTCAC	0.512													8	21					0	0	0.000442599	0	0
PXDN	7837	broad.mit.edu	37	2	1652770	1652770	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:1652770C>T	uc002qxa.2	-	17	2846	c.2782G>A	c.(2782-2784)GAC>AAC	p.D928N		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	928					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		CTGGCCAGGTCGCGGATGCTG	0.692													8	20					0	0	6.40141e-05	0	0
APOB	338	broad.mit.edu	37	2	21247901	21247901	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:21247901C>T	uc002red.2	-	16	2468	c.2340G>A	c.(2338-2340)TTG>TTA	p.L780L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	780					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GCTCCTCTCCCAAGATGCGGA	0.512													32	173					0	0	0.000491102	0	0
FAM179A	165186	broad.mit.edu	37	2	29256429	29256429	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:29256429G>A	uc010ezl.2	+	16	2576	c.2225G>A	c.(2224-2226)GGG>GAG	p.G742E	FAM179A_uc010ymm.1_Missense_Mutation_p.G687E|FAM179A_uc002rmr.3_Missense_Mutation_p.G269E|FAM179A_uc002rms.1_Missense_Mutation_p.G40E	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	742							binding			ovary(3)|skin(1)	4						ATCAAGGAGGGGTATGGCTGC	0.537													8	20					0	0	0.000274275	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43933532	43933533	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:43933532_43933533CC>AA	uc010yny.1	+	10	1881_1882	c.1798_1799CC>AA	c.(1798-1800)CCA>AAA	p.P600K	PLEKHH2_uc002rte.3_Missense_Mutation_p.P600K|PLEKHH2_uc002rtf.3_Missense_Mutation_p.P599K	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	600						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CATGACCACCCCAGTGTATACA	0.361													16	574					0	0	6.4e-05	0	0
MSH6	2956	broad.mit.edu	37	2	48030752	48030752	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:48030752G>A	uc002rwd.3	+	5	3518	c.3366G>A	c.(3364-3366)CAG>CAA	p.Q1122Q	MSH6_uc010fbj.2_Silent_p.Q820Q|MSH6_uc010yoi.1_Silent_p.Q992Q|MSH6_uc010yoj.1_Silent_p.Q820Q	NM_000179	NP_000170	P52701	MSH6_HUMAN	mutS homolog 6	1122	Poly-Glu.				determination of adult lifespan|DNA damage response, signal transduction resulting in induction of apoptosis|isotype switching|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|response to UV|somatic hypermutation of immunoglobulin genes	MutSalpha complex	ATP binding|DNA-dependent ATPase activity|protein binding			large_intestine(53)|central_nervous_system(28)|endometrium(28)|stomach(22)|haematopoietic_and_lymphoid_tissue(9)|lung(7)|skin(6)|urinary_tract(5)|breast(5)|ovary(3)|thyroid(1)|upper_aerodigestive_tract(1)	168		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AAGAGGAGCAGGAAAATGGCA	0.398			Mis|N|F|S		colorectal	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				7	26					0	0	8.12818e-05	0	0
TSPYL6	388951	broad.mit.edu	37	2	54483133	54483133	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:54483133G>A	uc002rxr.2	-	1	277	c.156C>T	c.(154-156)CCC>CCT	p.P52P	ACYP2_uc002rxq.3_Intron	NM_001003937	NP_001003937	Q8N831	TSYL6_HUMAN	TSPY-like 6	52					nucleosome assembly	nucleus					0						CTGGAAGCCGGGGCGGTGGGA	0.607													23	102					0	0	0.000878237	0	0
C2orf7	84279	broad.mit.edu	37	2	73457337	73457337	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:73457337G>A	uc002siy.2	-	2	140	c.72C>T	c.(70-72)TTC>TTT	p.F24F		NM_032319	NP_115695	Q9BSG0	PADC1_HUMAN	chromosome 2 open reading frame 7 precursor	24						extracellular region					0						CATGGATACGGAAGCCTGAAG	0.478													17	23					0	0	0.000566183	0	0
TGOLN2	10618	broad.mit.edu	37	2	85554560	85554561	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:85554560_85554561CC>AA	uc010fgd.1	-	2	583_584	c.294_295GG>TT	c.(292-297)TCGGGT>TCTTGT	p.G99C	TGOLN2_uc002soz.2_Missense_Mutation_p.G99C|TGOLN2_uc002spa.2_Intron|TGOLN2_uc002spb.2_Missense_Mutation_p.G99C|TGOLN2_uc002spc.1_Missense_Mutation_p.G99C	NM_006464	NP_006455	O43493	TGON2_HUMAN	trans-golgi network protein 2	99	Extracellular (Potential).|14 X 14 AA tandem repeats.|4.					integral to membrane|nucleus|plasma membrane|trans-Golgi network|transport vesicle	protein binding				0						GCCTCCGCACCCGACTTGTTGG	0.584													14	647					0	0	6.4e-05	0	0
RNF181	51255	broad.mit.edu	37	2	85824241	85824241	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:85824241C>T	uc002spv.1	+	4	392	c.342C>T	c.(340-342)CCC>CCT	p.P114P		NM_016494	NP_057578	Q9P0P0	RN181_HUMAN	ring finger protein 181	114	RING-type; atypical.						ligase activity|zinc ion binding				0						ATTCCTGTCCCTTGTGCCGCT	0.512													40	150					0	0	0.000680045	0	0
Unknown	0	broad.mit.edu	37	2	89475930	89475930	+	RNA	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:89475930G>A	uc010ytr.1	-	28		c.3551C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TGGGACCCCAGAGAACCGGTT	0.507													12	55					0	0	0.000308642	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95522815	95522815	+	RNA	SNP	A	G	G			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:95522815A>G	uc010fhp.2	-	1		c.6T>C				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						ATCTTCTGCAATTCGGAGTCC	0.652													3	103					0	0	0.000602214	0	0
INPP4A	3631	broad.mit.edu	37	2	99204045	99204045	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:99204045G>A	uc002syy.2	+	26	3301	c.2908G>A	c.(2908-2910)GGG>AGG	p.G970R	INPP4A_uc010yvk.1_Missense_Mutation_p.G931R|INPP4A_uc002syx.2_Missense_Mutation_p.G965R|INPP4A_uc010fik.2_Missense_Mutation_p.G299R	NM_001134224	NP_001127696	Q96PE3	INP4A_HUMAN	inositol polyphosphate-4-phosphatase, type 1	970					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			kidney(1)	1						GCCTCCCGAAGGGACTTACGG	0.403													28	109					0	0	0.000339439	0	0
C2orf55	343990	broad.mit.edu	37	2	99439605	99439605	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:99439605G>A	uc002szf.1	-	7	1425	c.1131C>T	c.(1129-1131)CCC>CCT	p.P377P		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	377	Pro-rich.										0						ACGGGCCTGCGGGGGGCGCCT	0.751													4	18					0	0	0.000602214	0	0
LONRF2	164832	broad.mit.edu	37	2	100903504	100903504	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:100903504C>T	uc002tal.3	-	11	2582	c.1942G>A	c.(1942-1944)GAA>AAA	p.E648K	LONRF2_uc010yvs.1_RNA	NM_198461	NP_940863	Q1L5Z9	LONF2_HUMAN	LON peptidase N-terminal domain and ring finger	648	Lon.			E -> Q (in Ref. 1; AAY84832).	proteolysis		ATP-dependent peptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2						GCGGCAAGTTCTTCATACTCT	0.493													5	24					0	0	3.59834e-05	0	0
IL1RL1	9173	broad.mit.edu	37	2	102965638	102965638	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:102965638C>T	uc002tbu.1	+	10	1488	c.1217C>T	c.(1216-1218)CCT>CTT	p.P406L	IL18R1_uc002tbw.3_Intron	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	406	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						CAGATTCTGCCTGATGTTCTT	0.418													10	32					0	0	6.40141e-05	0	0
INHBB	3625	broad.mit.edu	37	2	121106796	121106796	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:121106796G>A	uc002tmn.2	+	2	616	c.570G>A	c.(568-570)GAG>GAA	p.E190E		NM_002193	NP_002184	P09529	INHBB_HUMAN	inhibin beta B subunit preproprotein	190					activin receptor signaling pathway|cellular response to insulin stimulus|cellular response to starvation|defense response|fat cell differentiation|growth|negative regulation of follicle-stimulating hormone secretion|negative regulation of hepatocyte growth factor biosynthetic process|negative regulation of insulin secretion|ovarian follicle development|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation	extracellular region|perinuclear region of cytoplasm	cytokine activity|growth factor activity|hormone activity|host cell surface receptor binding|protein homodimerization activity			pancreas(2)|skin(1)	3		Prostate(154;0.122)				ACGTCCTGGAGAAGGGCAGCC	0.582													18	85					0	0	0.00074312	0	0
POTEF	728378	broad.mit.edu	37	2	130832707	130832707	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:130832707C>T	uc010fmh.2	-	17	2738	c.2338G>A	c.(2338-2340)GAT>AAT	p.D780N		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	780	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						TCCATGTCATCCCAGTTGGTG	0.572													34	87					0	0	0.000270559	0	0
POTEE	445582	broad.mit.edu	37	2	132021837	132021837	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:132021837G>A	uc002tsn.2	+	15	2861	c.2809G>A	c.(2809-2811)GAG>AAG	p.E937K	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Missense_Mutation_p.E537K|POTEE_uc002tsl.2_Missense_Mutation_p.E519K|POTEE_uc010fmy.1_Missense_Mutation_p.E401K	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	937	Actin-like.						ATP binding				0						CTCCTCCCTAGAGAAGAGCTA	0.627													36	180					0	0	0.000191422	0	0
RIF1	55183	broad.mit.edu	37	2	152273156	152273157	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:152273156_152273157GG>TT	uc002txm.2	+	5	492_493	c.362_363GG>TT	c.(361-363)TGG>TTT	p.W121F	RIF1_uc002txl.2_Missense_Mutation_p.W121F|RIF1_uc010fnv.1_Missense_Mutation_p.W85F|RIF1_uc002txn.2_Missense_Mutation_p.W121F|RIF1_uc002txo.2_Missense_Mutation_p.W121F|RIF1_uc010zby.1_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	121					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		AGAGCACTTTGGGTGATATCTA	0.342													13	406					0	0	6.4e-05	0	0
SLC4A10	57282	broad.mit.edu	37	2	162834230	162834230	+	Splice_Site	SNP	A	G	G			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:162834230A>G	uc002ubx.3	+	26	3529	c.3345_splice	c.e26-2	p.S1115_splice	SLC4A10_uc002uby.3_Splice_Site_p.S1085_splice|SLC4A10_uc010zcs.1_Splice_Site_p.S1096_splice	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate						bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						TTTTGTCATAAGCTCCCCTTC	0.333													11	63					0	0	0.00010058	0	0
IFIH1	64135	broad.mit.edu	37	2	163174366	163174367	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:163174366_163174367CG>AT	uc002uce.2	-	1	673_674	c.451_452CG>AT	c.(451-453)CGG>ATG	p.R151M	IFIH1_uc002ucf.2_Missense_Mutation_p.R151M	NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	151	CARD 2.				detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						GACACCTACCCGGTTTCTGTCT	0.49													20	651					0	0	6.4e-05	0	0
SCN3A	6328	broad.mit.edu	37	2	165947405	165947405	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:165947405C>T	uc002ucx.2	-	28	5750	c.5258G>A	c.(5257-5259)AGT>AAT	p.S1753N	SCN3A_uc010zcy.1_Missense_Mutation_p.S236N|SCN3A_uc002ucy.2_Missense_Mutation_p.S1704N|SCN3A_uc002ucz.2_Missense_Mutation_p.S1704N	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1753	Helical; Name=S6 of repeat IV; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	GATGATGTAACTGACAAAAAA	0.483													16	10					0	0	0.000422831	0	0
XIRP2	129446	broad.mit.edu	37	2	168104833	168104833	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:168104833C>T	uc002udx.2	+	8	6949	c.6931C>T	c.(6931-6933)CCT>TCT	p.P2311S	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.P2136S|XIRP2_uc010fpq.2_Missense_Mutation_p.P2089S|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2136	Pro-rich.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ATTTCCTCTTCCTCCTCCACC	0.443													6	17					0	0	8.12818e-05	0	0
CIR1	9541	broad.mit.edu	37	2	175246495	175246496	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:175246495_175246496CC>AA	uc002uim.2	-	3	270_271	c.177_178GG>TT	c.(175-180)ATGGGA>ATTTGA	p.59_60MG>I*	CIR1_uc002uin.2_5'UTR|CIR1_uc002uio.2_5'UTR|CIR1_uc002uip.2_5'UTR	NM_004882	NP_004873	Q86X95	CIR1_HUMAN	CBF1 interacting corepressor	59_60	Interaction with RBPJ.				mRNA processing|negative regulation of transcription, DNA-dependent|RNA splicing	nuclear speck	protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			large_intestine(1)	1						CGTTCATCTCCCATAAGCAATC	0.327													12	392					0	0	6.4e-05	0	0
EVX2	344191	broad.mit.edu	37	2	176948300	176948300	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:176948300C>T	uc010zeu.1	-	1	391	c.205G>A	c.(205-207)GGC>AGC	p.G69S		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	69						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		TCGAATTTGCCCTTGGCGGGG	0.632													31	70					0	0	0.000339439	0	0
TTN	7273	broad.mit.edu	37	2	179472560	179472560	+	Nonsense_Mutation	SNP	C	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:179472560C>A	uc010zfg.1	-	225	45474	c.45250G>T	c.(45250-45252)GAA>TAA	p.E15084*	uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.E8779*|TTN_uc010zfi.1_Nonsense_Mutation_p.E8712*|TTN_uc010zfj.1_Nonsense_Mutation_p.E8587*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16011							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCGGTCCTTCCCCTGCGGCA	0.458													21	25					1.17739e-12	1.28702e-11	0.000878237	1	0
TTN	7273	broad.mit.edu	37	2	179569996	179569996	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:179569996T>C	uc010zfg.1	-	100	26001	c.25777A>G	c.(25777-25779)AAA>GAA	p.K8593E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.K5254E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9520							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGGGCATATTTTTCATATTCT	0.373													9	26					0	0	0.000274275	0	0
TTN	7273	broad.mit.edu	37	2	179665300	179665300	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:179665300C>T	uc002und.2	-	4	630	c.405G>A	c.(403-405)GTG>GTA	p.V135V	TTN_uc010zfg.1_Silent_p.V135V|TTN_uc010zfh.1_Silent_p.V135V|TTN_uc010zfi.1_Silent_p.V135V|TTN_uc010zfj.1_Silent_p.V135V|TTN_uc002unb.2_Silent_p.V135V			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	135							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGTAGAACTTCACCACAGGTG	0.507													6	64					0	0	3.59834e-05	0	0
DNAJC10	54431	broad.mit.edu	37	2	183621054	183621054	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:183621054C>T	uc002uow.1	+	18	2082	c.1667C>T	c.(1666-1668)CCT>CTT	p.P556L	DNAJC10_uc002uox.1_RNA|DNAJC10_uc002uoy.1_RNA|DNAJC10_uc002uoz.1_Missense_Mutation_p.P510L|DNAJC10_uc010fro.1_RNA	NM_018981	NP_061854	Q8IXB1	DJC10_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 10	556					apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|ER-associated protein catabolic process|glycerol ether metabolic process|negative regulation of protein phosphorylation|protein folding|response to endoplasmic reticulum stress	endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|extracellular region	ATPase activator activity|ATPase binding|chaperone binding|electron carrier activity|heat shock protein binding|misfolded protein binding|protein disulfide oxidoreductase activity|unfolded protein binding			ovary(1)|large_intestine(1)|breast(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			CTTATGAATCCTTCAGTGGTC	0.358													10	33					0	0	6.40141e-05	0	0
ZNF804A	91752	broad.mit.edu	37	2	185798353	185798353	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:185798353G>A	uc002uph.2	+	3	873	c.279G>A	c.(277-279)AGG>AGA	p.R93R		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	93						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TGAAACAAAGGGAATTTGCTC	0.353													7	3					0	0	8.12818e-05	0	0
COL3A1	1281	broad.mit.edu	37	2	189875617	189875617	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:189875617G>A	uc002uqj.1	+	50	4371	c.4254_splice	c.e50+1	p.T1418_splice		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein						axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TGGTTGCACGGTAGGAAACAT	0.348													9	41					0	0	6.40141e-05	0	0
SLC40A1	30061	broad.mit.edu	37	2	190428646	190428646	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:190428646C>T	uc002uqp.3	-	7	1417	c.1066G>A	c.(1066-1068)GGA>AGA	p.G356R		NM_014585	NP_055400	Q9NP59	S40A1_HUMAN	solute carrier family 40 (iron-regulated	356	Helical; (Potential).				anatomical structure morphogenesis|cellular iron ion homeostasis	cytoplasm|integral to plasma membrane	iron ion transmembrane transporter activity|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000917)|Epithelial(96;0.014)|all cancers(119;0.0491)			GCTACAGTTCCCATTATTCCA	0.473													9	11					0	0	0.000274275	0	0
DNAH7	56171	broad.mit.edu	37	2	196729046	196729046	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:196729046C>T	uc002utj.3	-	41	7434	c.7333G>A	c.(7333-7335)GAT>AAT	p.D2445N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2445	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTGGTTTTATCCCGCTGGCGA	0.453													11	24					0	0	0.000151284	0	0
DNAH7	56171	broad.mit.edu	37	2	196774799	196774799	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:196774799G>A	uc002utj.3	-	25	4157	c.4056C>T	c.(4054-4056)TTC>TTT	p.F1352F		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1352	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CAGAGCAGTTGAAAACAACAC	0.423													5	19					0	0	0.000602214	0	0
WDR12	55759	broad.mit.edu	37	2	203748421	203748422	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:203748421_203748422CC>AA	uc002uzl.2	-	11	1781_1782	c.1031_1032GG>TT	c.(1030-1032)TGG>TTT	p.W344F	WDR12_uc010ftt.2_Missense_Mutation_p.W344F	NM_018256	NP_060726	Q9GZL7	WDR12_HUMAN	WD repeat domain 12 protein	344	WD 6.|Sufficient for nucleolar localization.				cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						CTGATGTCACCCAACCAGTATG	0.401													16	568					0	0	6.4e-05	0	0
NBEAL1	65065	broad.mit.edu	37	2	203977877	203977878	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:203977877_203977878GG>TT	uc002uzt.3	+	16	2588_2589	c.2255_2256GG>TT	c.(2254-2256)TGG>TTT	p.W752F		NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	752							binding			ovary(1)|skin(1)	2						TCAGCCTCCTGGGGAGGAACAA	0.48													15	742					0	0	6.4e-05	0	0
MDH1B	130752	broad.mit.edu	37	2	207629981	207629981	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:207629981G>A	uc002vbs.2	-	1	70	c.15C>T	c.(13-15)GTC>GTT	p.V5V	MDH1B_uc010ziw.1_RNA|MDH1B_uc010fui.2_Silent_p.V5V|MDH1B_uc010fuj.2_5'UTR|MDH1B_uc002vbt.2_RNA|FASTKD2_uc002vbu.2_5'Flank|FASTKD2_uc002vbv.2_5'Flank|FASTKD2_uc002vbx.2_5'Flank|FASTKD2_uc002vbw.1_5'Flank	NM_001039845	NP_001034934	Q5I0G3	MDH1B_HUMAN	malate dehydrogenase 1B, NAD (soluble)	5					carbohydrate metabolic process|malate metabolic process|tricarboxylic acid cycle		binding|malate dehydrogenase activity			ovary(3)|kidney(1)	4				LUSC - Lung squamous cell carcinoma(261;0.0763)|Epithelial(149;0.131)|Lung(261;0.145)		CACCCGCGATGACGAATTTGG	0.637													13	79					0	0	0.000219431	0	0
FASTKD2	22868	broad.mit.edu	37	2	207651540	207651540	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:207651540C>T	uc002vbu.2	+	8	1921	c.1511C>T	c.(1510-1512)TCA>TTA	p.S504L	FASTKD2_uc002vbv.2_Missense_Mutation_p.S504L|FASTKD2_uc002vbx.2_Missense_Mutation_p.S504L|FASTKD2_uc002vbw.1_Missense_Mutation_p.S504L	NM_001136193	NP_001129665	Q9NYY8	FAKD2_HUMAN	FAST kinase domains 2	504					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(2)|skin(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0718)|Epithelial(149;0.119)|Lung(261;0.138)		GCAGTATATTCATTTTGCTTG	0.403													15	23					0	0	0.000219431	0	0
PTH2R	5746	broad.mit.edu	37	2	209358320	209358320	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:209358320C>T	uc002vdb.2	+	13	1802	c.1589C>T	c.(1588-1590)TCC>TTC	p.S530F	PTH2R_uc010zjb.1_Missense_Mutation_p.S541F|PTH2R_uc010fuo.1_Intron	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	530	Cytoplasmic (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		GAGAAGCCTTCCAGGCCTATG	0.502													27	76					0	0	0.000720815	0	0
VIL1	7429	broad.mit.edu	37	2	219295545	219295545	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:219295545G>A	uc002via.2	+	10	1111	c.1046G>A	c.(1045-1047)TGG>TAG	p.W349*	VIL1_uc010zke.1_Nonsense_Mutation_p.W38*|VIL1_uc002vib.2_Nonsense_Mutation_p.W349*|VIL1_uc002vic.1_Nonsense_Mutation_p.W349*	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	349	Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TTCCAGAAGTGGACAGCGTCC	0.612													5	39					0	0	0.000602214	0	0
CCDC108	255101	broad.mit.edu	37	2	219888059	219888059	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:219888059G>A	uc002vjl.1	-	16	2774	c.2690C>T	c.(2689-2691)TCC>TTC	p.S897F		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	897	MSP.					integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGGGCTGGTGGAGGAGCAGCC	0.632													7	49					0	0	0.000157383	0	0
TRIP12	9320	broad.mit.edu	37	2	230636271	230636271	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:230636271G>A	uc002vpw.1	-	38	5656	c.5547C>T	c.(5545-5547)TTC>TTT	p.F1849F	TRIP12_uc002vpx.1_Silent_p.F1897F|TRIP12_uc002vpy.1_Silent_p.F1579F	NM_004238	NP_004229	Q14669	TRIPC_HUMAN	thyroid hormone receptor interactor 12	1849					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	proteasome complex	thyroid hormone receptor binding|ubiquitin-protein ligase activity			ovary(4)|lung(2)|breast(1)|central_nervous_system(1)|skin(1)	9		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.126)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;4.76e-13)|all cancers(144;4.34e-10)|LUSC - Lung squamous cell carcinoma(224;0.00864)|Lung(119;0.0116)		GACTGAGTGGGAAGACTGATT	0.383													11	26					0	0	0.000219431	0	0
SLC16A14	151473	broad.mit.edu	37	2	230902209	230902209	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:230902209A>T	uc002vqd.1	-	5	1783	c.1420T>A	c.(1420-1422)TTC>ATC	p.F474I	FBXO36_uc010fxi.1_Intron	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	474	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		CATATGTAGAAGGAAAAATCA	0.328													10	44					0	0	0.000442599	0	0
SP100	6672	broad.mit.edu	37	2	231331029	231331029	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:231331029C>T	uc002vqt.2	+	12	1296	c.1155C>T	c.(1153-1155)TTC>TTT	p.F385F	SP100_uc002vqs.2_Silent_p.F385F|SP100_uc002vqu.1_Silent_p.F385F|SP100_uc002vqq.1_Silent_p.F385F|SP100_uc002vqr.1_Silent_p.F360F|SP100_uc010zmc.1_Silent_p.F360F|SP100_uc002vqv.1_Silent_p.F349F	NM_003113	NP_003104	P23497	SP100_HUMAN	nuclear antigen Sp100 isoform 2	385					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			ovary(4)|central_nervous_system(1)	5		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		CCATGGATTTCAGAAAATTAT	0.338													14	38					0	0	0.000308642	0	0
UGT1A10	54575	broad.mit.edu	37	2	234545621	234545621	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:234545621T>A	uc002vur.2	+	1	499	c.453T>A	c.(451-453)GAT>GAA	p.D151E	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Missense_Mutation_p.D151E	NM_019075	NP_061948	Q9HAW8	UD110_HUMAN	UDP glycosyltransferase 1 family, polypeptide	151					flavone metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding			ovary(2)|skin(1)	3		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;1.96e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000468)|Lung(119;0.00381)|LUSC - Lung squamous cell carcinoma(224;0.008)		ATCCTTTTGATACCTGTGGCT	0.403													15	72					0	0	0.000219431	0	0
COL6A3	1293	broad.mit.edu	37	2	238270405	238270405	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:238270405G>A	uc002vwl.2	-	15	6418	c.6133C>T	c.(6133-6135)CCC>TCC	p.P2045S	COL6A3_uc002vwo.2_Missense_Mutation_p.P1839S|COL6A3_uc010znj.1_Missense_Mutation_p.P1438S	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2045	Triple-helical region.|Collagen-like 1.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CTGCCGATGGGCCCGCGGTCT	0.562													18	127					0	0	0.000175454	0	0
COL6A3	1293	broad.mit.edu	37	2	238285803	238285803	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:238285803C>T	uc002vwl.2	-	7	2967	c.2682G>A	c.(2680-2682)CAG>CAA	p.Q894Q	COL6A3_uc002vwo.2_Silent_p.Q688Q|COL6A3_uc010znj.1_Silent_p.Q287Q|COL6A3_uc002vwq.2_Silent_p.Q688Q|COL6A3_uc002vwr.2_Silent_p.Q487Q|COL6A3_uc010znk.1_Silent_p.Q694Q	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	894	Nonhelical region.|VWFA 5.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CAGGCTTACTCTGGTGCTCAT	0.507													31	98					0	0	0.000339439	0	0
TMC2	117532	broad.mit.edu	37	20	2559848	2559848	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr20:2559848G>A	uc002wgf.1	+	6	717	c.702G>A	c.(700-702)TGG>TGA	p.W234*	TMC2_uc002wgg.1_Nonsense_Mutation_p.W218*|TMC2_uc010zpw.1_Nonsense_Mutation_p.W66*|TMC2_uc010zpx.1_Nonsense_Mutation_p.W65*	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	234	Arg/Asp/Glu/Lys-rich (highly charged).|Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						GTATCCCCTGGGAAATGAAGA	0.368													12	38					0	0	0.000422831	0	0
ADRA1D	146	broad.mit.edu	37	20	4202630	4202630	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr20:4202630T>C	uc002wkr.2	-	2	1314	c.1259A>G	c.(1258-1260)CAG>CGG	p.Q420R		NM_000678	NP_000669	P25100	ADA1D_HUMAN	alpha-1D-adrenergic receptor	420	Cytoplasmic (By similarity).				cell proliferation|cell-cell signaling|DNA metabolic process|G-protein signaling, coupled to cAMP nucleotide second messenger|multicellular organismal development|positive regulation of cell proliferation	integral to plasma membrane	alpha1-adrenergic receptor activity				0					Alfuzosin(DB00346)|Bethanidine(DB00217)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Doxazosin(DB00590)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Methotrimeprazine(DB01403)|Norepinephrine(DB00368)|Promazine(DB00420)|Propericiazine(DB01608)|Propiomazine(DB00777)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)	ACGACGGCACTGGCAGCGCAG	0.692													3	7					0	0	6.4e-05	0	0
PROKR2	128674	broad.mit.edu	37	20	5283169	5283169	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr20:5283169G>A	uc010zqw.1	-	2	672	c.672C>T	c.(670-672)TTC>TTT	p.F224F	PROKR2_uc010zqx.1_Silent_p.F224F|PROKR2_uc010zqy.1_Silent_p.F224F	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	224	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						AGATGAAGAGGAAGTAGGACT	0.537										HNSCC(71;0.22)			13	67					0	0	0.000151284	0	0
INSM1	3642	broad.mit.edu	37	20	20350318	20350318	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr20:20350318C>T	uc002wrx.2	+	1	1554	c.1407C>T	c.(1405-1407)TTC>TTT	p.F469F		NM_002196	NP_002187	Q01101	INSM1_HUMAN	insulinoma-associated 1	469	C2H2-type 5.				endocrine pancreas development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0649)		CCCAGGTGTTCCCCTGCAAGT	0.662													6	31					0	0	8.12818e-05	0	0
PLUNC	51297	broad.mit.edu	37	20	31826004	31826004	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr20:31826004C>T	uc002wyv.2	+	3	374	c.304C>T	c.(304-306)CTG>TTG	p.L102L	PLUNC_uc002wyt.3_Silent_p.L102L|PLUNC_uc002wyu.3_Silent_p.L102L	NM_130852	NP_570913	Q9NP55	PLUNC_HUMAN	palate, lung and nasal epithelium associated	102					innate immune response	extracellular region	lipid binding				0						GATTCCTGGCCTGAACAACAT	0.542													12	79					0	0	0.000422831	0	0
C20orf114	92747	broad.mit.edu	37	20	31878803	31878803	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr20:31878803G>A	uc002wyw.1	+	5	567	c.406G>A	c.(406-408)GAG>AAG	p.E136K	C20orf114_uc010gej.1_Missense_Mutation_p.E136K	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	136						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						CATGACGACTGAGGCCCAAGC	0.637													6	32					0	0	3.59834e-05	0	0
ZNF341	84905	broad.mit.edu	37	20	32379277	32379277	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr20:32379277C>T	uc002wzy.2	+	15	2539	c.2519C>T	c.(2518-2520)CCA>CTA	p.P840L	ZNF341_uc002wzx.2_Missense_Mutation_p.P833L|ZNF341_uc010geq.2_Missense_Mutation_p.P750L|ZNF341_uc010ger.2_RNA|ZNF341_uc002wzz.2_Missense_Mutation_p.P267L	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	840					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GCCGAGGGCCCATGTGCCATG	0.667													15	21					0	0	0.00074312	0	0
SLC32A1	140679	broad.mit.edu	37	20	37356406	37356406	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr20:37356406G>A	uc002xjc.2	+	2	965	c.702G>A	c.(700-702)CCG>CCA	p.P234P		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	234	Cytoplasmic (Potential).				neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	ACAGCTTCCCGGGGCTGCCCG	0.597													8	33					0	0	0.000442599	0	0
FAM65C	140876	broad.mit.edu	37	20	49225065	49225065	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr20:49225065C>T	uc002xvm.2	-	11	1123	c.805G>A	c.(805-807)GAG>AAG	p.E269K	FAM65C_uc010zyt.1_Missense_Mutation_p.E273K|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Missense_Mutation_p.E269K	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	269										ovary(2)	2						CCCCGCAACTCCGTCACCTGG	0.682													15	105					0	0	0.000422831	0	0
PMEPA1	56937	broad.mit.edu	37	20	56227493	56227493	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr20:56227493G>A	uc002xyq.2	-	4	873	c.480C>T	c.(478-480)CCC>CCT	p.P160P	PMEPA1_uc002xyr.2_Silent_p.P110P|PMEPA1_uc002xys.2_Silent_p.P125P|PMEPA1_uc002xyt.2_Silent_p.P110P	NM_020182	NP_064567	Q969W9	PMEPA_HUMAN	transmembrane prostate androgen-induced protein	160	WW-binding 1.|Cytoplasmic (Potential).				androgen receptor signaling pathway	integral to membrane|plasma membrane	WW domain binding			pancreas(1)	1						GGCCCTGGTAGGGTGGGGGCT	0.662													5	44					0	0	0.000157383	0	0
PMEPA1	56937	broad.mit.edu	37	20	56227583	56227583	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr20:56227583G>A	uc002xyq.2	-	4	783	c.390C>T	c.(388-390)TTC>TTT	p.F130F	PMEPA1_uc002xyr.2_Silent_p.F80F|PMEPA1_uc002xys.2_Silent_p.F95F|PMEPA1_uc002xyt.2_Silent_p.F80F	NM_020182	NP_064567	Q969W9	PMEPA_HUMAN	transmembrane prostate androgen-induced protein	130	Cytoplasmic (Potential).				androgen receptor signaling pathway	integral to membrane|plasma membrane	WW domain binding			pancreas(1)	1						GGAAGCGGTGGAAGCGCTCCC	0.711													6	15					0	0	0.000157383	0	0
C20orf197	284756	broad.mit.edu	37	20	58645066	58645066	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr20:58645066G>A	uc002ybj.1	+	3	343	c.37G>A	c.(37-39)GCA>ACA	p.A13T		NM_173644	NP_775915	Q8N268	CT197_HUMAN	hypothetical protein LOC284756	13										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(7;2.33e-09)			TTATTGGCAGGCAGACGGCTA	0.567													8	68					0	0	0.000274275	0	0
KCNQ2	3785	broad.mit.edu	37	20	62065217	62065217	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr20:62065217C>T	uc002yey.1	-	8	1240	c.1063G>A	c.(1063-1065)GAC>AAC	p.D355N	KCNQ2_uc002yez.1_Missense_Mutation_p.D355N|KCNQ2_uc002yfa.1_Missense_Mutation_p.D355N|KCNQ2_uc002yfb.1_Missense_Mutation_p.D355N|KCNQ2_uc011aax.1_Missense_Mutation_p.D355N|KCNQ2_uc002yfc.1_Missense_Mutation_p.D355N	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	355	Cytoplasmic (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	GAGTGCAGGTCTGTGCGCGAG	0.637													14	107					0	0	0.000219431	0	0
ZBTB46	140685	broad.mit.edu	37	20	62421446	62421446	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr20:62421446C>G	uc002ygv.1	-	2	866	c.665G>C	c.(664-666)GGC>GCC	p.G222A	ZBTB46_uc002ygu.2_RNA	NM_025224	NP_079500	Q86UZ6	ZBT46_HUMAN	zinc finger and BTB domain containing 46	222					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)|ovary(1)	2	all_cancers(38;2.09e-12)|all_epithelial(29;3.8e-14)|Lung NSC(23;7.61e-10)|all_lung(23;2.64e-09)					AGGCCCGTAGCCCACGTCTCC	0.587													5	40					0	0	8.12818e-05	0	0
ADAMTS5	11096	broad.mit.edu	37	21	28327101	28327101	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr21:28327101T>G	uc002ymg.2	-	2	1923	c.1194A>C	c.(1192-1194)GAA>GAC	p.E398D		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	398	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						GGCCATCGTCTTCAATCACAG	0.517													5	22					0	0	3.59834e-05	0	0
SYNJ1	8867	broad.mit.edu	37	21	34003881	34003881	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr21:34003881C>T	uc002yqh.2	-	32	4263	c.4263G>A	c.(4261-4263)CGG>CGA	p.R1421R	SYNJ1_uc011ads.1_3'UTR|SYNJ1_uc002yqf.2_3'UTR|SYNJ1_uc002yqg.2_Silent_p.R1335R|SYNJ1_uc002yqi.2_3'UTR|SYNJ1_uc002yqe.3_Silent_p.R7R	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	1382	Pro-rich.						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						GGGATTGACTCCGAGCTGGAA	0.468													5	21					0	0	0.000602214	0	0
IFNAR2	3455	broad.mit.edu	37	21	34617307	34617308	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr21:34617307_34617308CC>TA	uc002yrd.2	+	4	477_478	c.149_150CC>TA	c.(148-150)TCC>TTA	p.S50L	IFNAR2_uc002yrb.2_Missense_Mutation_p.S50L|IFNAR2_uc002yrc.2_Missense_Mutation_p.S50L|IFNAR2_uc002yre.2_Missense_Mutation_p.S50L|IFNAR2_uc002yrf.2_Missense_Mutation_p.S50L|IFNAR2_uc002yrg.2_5'Flank	NM_207585	NP_997468	P48551	INAR2_HUMAN	interferon alpha/beta receptor 2 isoform a	50	Extracellular (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to interferon-alpha|response to virus|type I interferon-mediated signaling pathway	extracellular region|extracellular space|integral to plasma membrane	protein kinase binding|type I interferon binding|type I interferon receptor activity				0					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	AATTTCCGGTCCATCTTATCAT	0.351													13	91					0	0	6.4e-05	0	0
ITSN1	6453	broad.mit.edu	37	21	35247714	35247714	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr21:35247714G>A	uc002yta.1	+	34	4498	c.4230G>A	c.(4228-4230)CTG>CTA	p.L1410L	DONSON_uc002ysn.1_Intron|ITSN1_uc002ytb.1_Silent_p.L1405L|ITSN1_uc002ytj.2_Intron|ITSN1_uc010gmm.1_RNA|ITSN1_uc010gmn.1_RNA|ITSN1_uc002ytk.1_RNA	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	1410	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						AGCACGCCCTGGAGAAGGCGG	0.557													10	69					0	0	0.00010058	0	0
DOPEY2	9980	broad.mit.edu	37	21	37605107	37605107	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr21:37605107G>A	uc002yvg.2	+	15	2435	c.2356G>A	c.(2356-2358)GGT>AGT	p.G786S	DOPEY2_uc011aeb.1_Missense_Mutation_p.G786S	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	786					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						TTCAGGAGCCGGTGATTCCAG	0.532													20	106					0	0	0.000295444	0	0
KCNJ6	3763	broad.mit.edu	37	21	39086700	39086700	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr21:39086700G>A	uc011aej.1	-	3	813	c.760C>T	c.(760-762)CCG>TCG	p.P254S	KCNJ6_uc002ywo.2_Missense_Mutation_p.P254S	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	254	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	TGGTTCAACGGGATGAACTCC	0.502													16	76					0	0	0.000308642	0	0
COL6A2	1292	broad.mit.edu	37	21	47531410	47531410	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr21:47531410C>T	uc002zia.1	+	2	102	c.20C>T	c.(19-21)TCC>TTC	p.S7F	COL6A2_uc002zhy.1_Missense_Mutation_p.S7F|COL6A2_uc002zhz.1_Missense_Mutation_p.S7F|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	7					axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		GGCACCTGCTCCGTGCTCCTG	0.657													8	48					0	0	0.000157383	0	0
TMEM211	255349	broad.mit.edu	37	22	25331491	25331491	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr22:25331491C>T	uc003abk.1	-	3	224	c.199G>A	c.(199-201)GAA>AAA	p.E67K		NM_001001663	NP_001001663	Q6ICI0	TM211_HUMAN	transmembrane protein 211	138						integral to membrane					0						GAGGAGGCTTCGCACACTTCC	0.532													28	40					0	0	0.000279167	0	0
MYO18B	84700	broad.mit.edu	37	22	26423473	26423473	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr22:26423473C>T	uc003abz.1	+	43	7783	c.7533C>T	c.(7531-7533)TCC>TCT	p.S2511S	MYO18B_uc003aca.1_Silent_p.S2392S|MYO18B_uc010guy.1_Silent_p.S2393S|MYO18B_uc010guz.1_Silent_p.S2391S|MYO18B_uc011aka.1_Silent_p.S1665S|MYO18B_uc011akb.1_Silent_p.S2024S|MYO18B_uc010gva.1_Silent_p.S494S|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2511	Poly-Ser.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CGTCCTCATCCTCCGGCTCCA	0.577													19	21					0	0	0.000175454	0	0
CRYBA4	1413	broad.mit.edu	37	22	27019281	27019281	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr22:27019281C>T	uc003acz.3	+	3	158	c.123C>T	c.(121-123)TTC>TTT	p.F41F		NM_001886	NP_001877	P53673	CRBA4_HUMAN	crystallin, beta A4	41	Beta/gamma crystallin 'Greek key' 1.				camera-type eye development|visual perception	soluble fraction	structural constituent of eye lens				0						AGCTTGGCTTCGAGACTGTGC	0.602													30	60					0	0	0.00058488	0	0
BPIL2	254240	broad.mit.edu	37	22	32833812	32833812	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr22:32833812G>A	uc003amn.2	-	7	682	c.682C>T	c.(682-684)CTG>TTG	p.L228L	BPIL2_uc010gwo.2_Silent_p.L42L|BPIL2_uc011amb.1_5'UTR	NM_174932	NP_777592	Q8NFQ6	BPIL2_HUMAN	bactericidal/permeability-increasing	228						extracellular region	lipopolysaccharide binding|phospholipid binding			ovary(1)|skin(1)	2						TAATCCAGCAGAGTGTAGTTG	0.343													11	19					0	0	0.000673444	0	0
WBP2NL	164684	broad.mit.edu	37	22	42422922	42422922	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr22:42422922G>A	uc011ape.1	+	7	683	c.667G>A	c.(667-669)GGA>AGA	p.G223R	WBP2NL_uc003bbt.2_Missense_Mutation_p.G223R|WBP2NL_uc011apk.1_Missense_Mutation_p.G95R|WBP2NL_uc003bbu.2_RNA|WBP2NL_uc003bbv.1_RNA	NM_152613	NP_689826	Q6ICG8	WBP2L_HUMAN	WBP2 N-terminal like	223	4.|10 X 7 AA tandem repeat of Y-G-X-P-P-X-G.|Gly-rich.				egg activation|male pronucleus assembly|meiosis	perinuclear theca	WW domain binding			ovary(2)	2						CCCACCTCTTGGATACGGAGC	0.607													66	101					0	0	0.000781405	0	0
FBLN2	2199	broad.mit.edu	37	3	13669404	13669404	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:13669404T>G	uc011avb.1	+	10	2488	c.2363T>G	c.(2362-2364)TTC>TGC	p.F788C	FBLN2_uc011auz.1_Missense_Mutation_p.F814C|FBLN2_uc011ava.1_Missense_Mutation_p.F835C|FBLN2_uc011avc.1_Missense_Mutation_p.F835C	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	788	EGF-like 4; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			AAGGGCTCCTTCTACTGCCAG	0.642													8	63					0	0	0.000157383	0	0
FGD5	152273	broad.mit.edu	37	3	14964555	14964555	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:14964555C>T	uc003bzc.2	+	16	3920	c.3810C>T	c.(3808-3810)ATC>ATT	p.I1270I	FGD5_uc011avk.1_Silent_p.I1270I|FGD5_uc003bzd.2_Silent_p.I348I	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	1270	FYVE-type.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						GCCTGCAGATCGTGTGCCGGA	0.607													15	55					0	0	0.000422831	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751458	26751458	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:26751458G>A	uc003cdp.2	+	2	884	c.295G>A	c.(295-297)GGC>AGC	p.G99S	LRRC3B_uc003cdq.2_Missense_Mutation_p.G99S	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	99	LRR 2.					integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						GTCCAAAAATGGCATTGAGTT	0.418													3	11					0	0	0.00024832	0	0
EOMES	8320	broad.mit.edu	37	3	27760228	27760228	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:27760228C>T	uc003cdx.2	-	4	1315	c.1315G>A	c.(1315-1317)GAT>AAT	p.D439N	EOMES_uc003cdy.3_Missense_Mutation_p.D439N|EOMES_uc010hfn.2_Missense_Mutation_p.D439N|EOMES_uc011axc.1_Missense_Mutation_p.D144N	NM_005442	NP_005433	O95936	EOMES_HUMAN	eomesodermin	439	T-box.				CD8-positive, alpha-beta T cell differentiation involved in immune response|cell differentiation involved in embryonic placenta development|endoderm formation|mesoderm formation|mesodermal to mesenchymal transition involved in gastrulation|positive regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|breast(1)	4						ACACTCACATCGGTGTTTTGG	0.438													22	149					0	0	0.000586117	0	0
SCN10A	6336	broad.mit.edu	37	3	38768220	38768220	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:38768220G>A	uc003ciq.2	-	16	2964	c.2964C>T	c.(2962-2964)ATC>ATT	p.I988I		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	988					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TCGGATTAGCGATGAAGTCAC	0.572													18	33					0	0	0.00074312	0	0
SMARCC1	6599	broad.mit.edu	37	3	47730890	47730890	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:47730890G>A	uc003crq.2	-	13	1368	c.1250C>T	c.(1249-1251)ACA>ATA	p.T417I	SMARCC1_uc011bbd.1_Missense_Mutation_p.T308I	NM_003074	NP_003065	Q92922	SMRC1_HUMAN	SWI/SNF-related matrix-associated	417					chromatin remodeling|nervous system development|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex|WINAC complex	DNA binding|protein N-terminus binding|transcription coactivator activity			skin(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;7.47e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)		TCCTCCTGCTGTGACTGTTTC	0.398													11	31					0	0	0.000151284	0	0
DOCK3	1795	broad.mit.edu	37	3	51350323	51350323	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:51350323G>A	uc011bds.1	+	31	3266	c.3243G>A	c.(3241-3243)TGG>TGA	p.W1081*		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1081						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TCAGCATGTGGCAGAATTTGG	0.423													3	10					0	0	0.00024832	0	0
EPHA3	2042	broad.mit.edu	37	3	89448538	89448538	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:89448538C>T	uc003dqy.2	+	7	1727	c.1502C>T	c.(1501-1503)CCT>CTT	p.P501L	EPHA3_uc003dqx.1_Missense_Mutation_p.P501L|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	501	Extracellular (Potential).|Fibronectin type-III 2.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		AGCCTCAAGCCTGACACTATA	0.428										TSP Lung(6;0.00050)			14	29					0	0	0.000308642	0	0
TBC1D23	55773	broad.mit.edu	37	3	100009430	100009431	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:100009430_100009431CC>TT	uc003dtt.2	+	5	662_663	c.485_486CC>TT	c.(484-486)TCC>TTT	p.S162F	TBC1D23_uc003dts.2_Missense_Mutation_p.S162F	NM_018309	NP_060779	Q9NUY8	TBC23_HUMAN	TBC1 domain family, member 23	162	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			ovary(1)|liver(1)	2						AGGGATTGTTCCCAGAAAGGGA	0.391													9	43					0	0	6.4e-05	0	0
CD96	10225	broad.mit.edu	37	3	111325559	111325559	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:111325559C>T	uc003dxw.2	+	9	1318	c.1148C>T	c.(1147-1149)TCC>TTC	p.S383F	CD96_uc003dxv.2_Missense_Mutation_p.S367F|CD96_uc003dxx.2_Missense_Mutation_p.S367F|CD96_uc010hpy.1_Missense_Mutation_p.S367F	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	383	Extracellular (Potential).|Pro/Ser/Thr-rich.				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						TCTGAAATTTCCTCAACAGAC	0.358									Opitz_Trigonocephaly_syndrome				6	24					0	0	3.59834e-05	0	0
WDR5B	54554	broad.mit.edu	37	3	122133664	122133664	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:122133664C>T	uc003efa.1	-	1	1219	c.712G>A	c.(712-714)GAT>AAT	p.D238N		NM_019069	NP_061942	Q86VZ2	WDR5B_HUMAN	WD repeat domain 5B	238	WD 5.									ovary(3)	3				GBM - Glioblastoma multiforme(114;0.0704)		CTGCTATAATCCCATAGTTTA	0.378													19	91					0	0	0.000295444	0	0
IL20RB	53833	broad.mit.edu	37	3	136676961	136676961	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:136676961G>A	uc003eri.1	+	1	255	c.6G>A	c.(4-6)CAG>CAA	p.Q2Q	IL20RB_uc003erj.1_RNA	NM_144717	NP_653318	Q6UXL0	I20RB_HUMAN	interleukin 20 receptor beta precursor	2						integral to membrane	receptor activity			ovary(1)	1						ACCAAATGCAGACTTTCACAA	0.368													10	26					0	0	6.40141e-05	0	0
ATR	545	broad.mit.edu	37	3	142172027	142172027	+	Silent	SNP	T	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:142172027T>C	uc003eux.3	-	46	7826	c.7704A>G	c.(7702-7704)CCA>CCG	p.P2568P	ATR_uc003euy.1_Silent_p.P454P	NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	2568					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						GCCCTTTCACTGGTTTACTCC	0.368								Other_conserved_DNA_damage_response_genes					27	51					0	0	0.000409698	0	0
CP	1356	broad.mit.edu	37	3	148939460	148939460	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:148939460C>T	uc003ewy.3	-	1	373	c.120G>A	c.(118-120)GGG>GGA	p.G40G	CP_uc011bnr.1_RNA|CP_uc003ewz.2_Silent_p.G40G	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	40	F5/8 type A 1.|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	GTTTCTTTTCCCCATGGTCAG	0.323													5	37					0	0	0.000274275	0	0
GHSR	2693	broad.mit.edu	37	3	172165570	172165570	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:172165570C>T	uc003fib.1	-	1	634	c.634G>A	c.(634-636)GTC>ATC	p.V212I	GHSR_uc011bpv.1_Missense_Mutation_p.V212I	NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	212	Helical; Name=5; (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			CACACCATGACCGTGAGCAGT	0.622													9	27					0	0	0.000673444	0	0
NCEH1	57552	broad.mit.edu	37	3	172351310	172351310	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:172351310G>A	uc011bpx.1	-	5	1440	c.1302C>T	c.(1300-1302)ATC>ATT	p.I434I	NCEH1_uc003fig.2_Silent_p.I426I|NCEH1_uc011bpw.1_Silent_p.I261I|NCEH1_uc011bpy.1_Silent_p.I261I	NM_001146276	NP_001139748	Q6PIU2	NCEH1_HUMAN	arylacetamide deacetylase-like 1 isoform a	394	Lumenal (Potential).				lipid catabolic process	endoplasmic reticulum|integral to membrane|microsome	carboxylesterase activity				0						TCCTAGTCCGGATTCCCACTG	0.502													6	46					0	0	8.12818e-05	0	0
LIPH	200879	broad.mit.edu	37	3	185241875	185241876	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:185241875_185241876GG>TT	uc003fpm.2	-	5	811_812	c.701_702CC>AA	c.(700-702)CCC>CAA	p.P234Q	LIPH_uc010hyh.2_Missense_Mutation_p.P200Q	NM_139248	NP_640341	Q8WWY8	LIPH_HUMAN	lipase, member H precursor	234					lipid catabolic process	extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(1)|pancreas(1)	2	all_cancers(143;8.87e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			ATATTGTTTTGGGGCAGCCAGG	0.317													11	500					0	0	6.4e-05	0	0
RTP1	132112	broad.mit.edu	37	3	186915469	186915469	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:186915469G>A	uc003frg.2	+	1	196	c.166G>A	c.(166-168)GAG>AAG	p.E56K		NM_153708	NP_714919	P59025	RTP1_HUMAN	receptor transporting protein 1	56	Cytoplasmic (Potential).				protein insertion into membrane	cell surface|integral to membrane|plasma membrane	olfactory receptor binding			ovary(2)|breast(1)	3	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.56e-18)	GBM - Glioblastoma multiforme(93;0.0269)		GAAGATGGAGGAGGCAAAGCC	0.507													15	34					0	0	0.000566183	0	0
HES1	3280	broad.mit.edu	37	3	193855629	193855629	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:193855629C>T	uc003ftq.1	+	4	686	c.450C>T	c.(448-450)ATC>ATT	p.I150I		NM_005524	NP_005515	Q14469	HES1_HUMAN	hairy and enhancer of split 1	150					endocrine pancreas development|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway	nucleus	histone deacetylase binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)	2	all_cancers(143;7.3e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;3.65e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;1.48e-05)		TGACCCAGATCAATGCCATGA	0.716													10	60					0	0	6.40141e-05	0	0
MUC4	4585	broad.mit.edu	37	3	195501092	195501092	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:195501092T>C	uc011bto.1	-	5	13104	c.12644A>G	c.(12643-12645)AAG>AGG	p.K4215R	MUC4_uc003fuz.2_Missense_Mutation_p.S23G|MUC4_uc003fva.2_5'UTR|MUC4_uc003fvb.2_5'UTR|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_5'UTR|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_5'UTR|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_5'UTR|MUC4_uc011bti.1_5'UTR|MUC4_uc011btj.1_Missense_Mutation_p.K84R|MUC4_uc011btk.1_5'UTR|MUC4_uc011btl.1_5'UTR|MUC4_uc011btm.1_Missense_Mutation_p.K84R|MUC4_uc011btn.1_5'UTR|MUC4_uc003fvo.2_Missense_Mutation_p.K107R|MUC4_uc003fvp.2_Missense_Mutation_p.K56R|MUC4_uc010hzu.1_Missense_Mutation_p.K955R	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1100					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		AGTCGCCGGCTTGAAGAGTGG	0.662													10	31					0	0	0.000673444	0	0
SDHAP1	255812	broad.mit.edu	37	3	195692311	195692311	+	Missense_Mutation	SNP	T	C	C	rs62282793	by1000genomes	TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr3:195692311T>C	uc003fvy.2	-	3	346	c.232A>G	c.(232-234)AGC>GGC	p.S78G	SDHAP1_uc003fvx.3_RNA					Homo sapiens full length insert cDNA clone ZC24D06.												0						TTCCCAGTGCTGACGTCCACA	0.607													4	17					0	0	3.59834e-05	0	0
PDE6B	5158	broad.mit.edu	37	4	651250	651250	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:651250G>A	uc003gap.2	+	10	1421	c.1368G>A	c.(1366-1368)GTG>GTA	p.V456V	PDE6B_uc003gao.3_Silent_p.V456V|PDE6B_uc011buy.1_Silent_p.V177V|uc003gaq.1_5'Flank	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	456					cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						TTTACCACGTGAAGTGCGACA	0.612													8	66					0	0	6.40141e-05	0	0
GRK4	2868	broad.mit.edu	37	4	3029658	3029658	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:3029658C>T	uc003ggn.1	+	11	1445	c.990C>T	c.(988-990)GAC>GAT	p.D330D	GRK4_uc003ggo.1_Silent_p.D330D|GRK4_uc003ggp.1_Silent_p.D298D|GRK4_uc003ggq.1_Silent_p.D298D	NM_182982	NP_892027	P32298	GRK4_HUMAN	G protein-coupled receptor kinase 4 isoform	330	Protein kinase.					cell cortex	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		GGATTTCAGACCTCGGTTTGG	0.493													11	111					0	0	0.000219431	0	0
KIAA0232	9778	broad.mit.edu	37	4	6865866	6865866	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:6865866C>T	uc003gjr.3	+	7	4220	c.3757C>T	c.(3757-3759)CCT>TCT	p.P1253S	KIAA0232_uc003gjq.3_Missense_Mutation_p.P1253S	NM_014743	NP_055558	Q92628	K0232_HUMAN	hypothetical protein LOC9778	1253							ATP binding			ovary(2)	2						TTGTCAGTTTCCTGCTTATGA	0.378													6	45					0	0	0.000157383	0	0
FGFBP1	9982	broad.mit.edu	37	4	15937835	15937835	+	Nonsense_Mutation	SNP	T	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:15937835T>A	uc003gom.2	-	2	539	c.421A>T	c.(421-423)AAG>TAG	p.K141*		NM_005130	NP_005121	Q14512	FGFP1_HUMAN	fibroblast growth factor binding protein 1	141					cell-cell signaling|negative regulation of cell proliferation|signal transduction	extracellular space|plasma membrane	heparin binding				0						GGAAAATCCTTTCTGCACACT	0.468													8	41					0	0	0.000274275	0	0
LDB2	9079	broad.mit.edu	37	4	16510260	16510260	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:16510260G>A	uc003goz.2	-	7	1105	c.789C>T	c.(787-789)TCC>TCT	p.S263S	LDB2_uc003gpa.2_Silent_p.S263S|LDB2_uc003gpb.2_Silent_p.S263S|LDB2_uc011bxh.1_Silent_p.S235S|LDB2_uc010iee.2_Silent_p.S263S|LDB2_uc003goy.2_Silent_p.S138S|LDB2_uc011bxi.1_Silent_p.S139S	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	263							LIM domain binding|transcription cofactor activity				0						TGCTGCTGGTGGAATTTTTCC	0.493													6	16					0	0	3.59834e-05	0	0
GBA3	57733	broad.mit.edu	37	4	22749269	22749269	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:22749269C>T	uc003gqp.3	+	3	728	c.637C>T	c.(637-639)CGA>TGA	p.R213*	GBA3_uc010iep.2_Intron|GBA3_uc011bxo.1_Nonsense_Mutation_p.R214*	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	213					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						TTCCTTATTTCGAAAAAAGCA	0.473													6	71					0	0	3.59834e-05	0	0
SLC34A2	10568	broad.mit.edu	37	4	25678243	25678243	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:25678243G>A	uc003grr.2	+	13	2026	c.1945G>A	c.(1945-1947)GAG>AAG	p.E649K	SLC34A2_uc003grs.2_Missense_Mutation_p.E648K|SLC34A2_uc010iev.2_Missense_Mutation_p.E648K	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	649	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				cGAGGACTTGGAGGAGGCGCA	0.333													10	38					0	0	0.000673444	0	0
TLR1	7096	broad.mit.edu	37	4	38798570	38798570	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:38798570A>G	uc003gtl.2	-	4	2157	c.1883T>C	c.(1882-1884)TTA>TCA	p.L628S		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	628	Cytoplasmic (Potential).				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						GAGTTCTTCTAAGGGTATGTT	0.483													8	35					0	0	0.000442599	0	0
DCAF4L1	285429	broad.mit.edu	37	4	41984761	41984761	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:41984761C>T	uc003gwk.2	+	1	1049	c.952C>T	c.(952-954)CTG>TTG	p.L318L		NM_001029955	NP_001025126	Q3SXM0	DC4L1_HUMAN	WD repeat domain 21B	318	WD 2.									skin(1)	1						GTCCGCCTATCTGCCCCTGCA	0.552													16	64					0	0	0.000566183	0	0
GNPDA2	132789	broad.mit.edu	37	4	44724174	44724174	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:44724174G>A	uc003gwy.2	-	2	208	c.51C>T	c.(49-51)GCC>GCT	p.A17A	GNPDA2_uc010iga.2_Silent_p.A17A|GNPDA2_uc011bzb.1_Intron|GNPDA2_uc003gwz.1_Silent_p.A17A	NM_138335	NP_612208	Q8TDQ7	GNPI2_HUMAN	glucosamine-6-phosphate deaminase 2	17					N-acetylglucosamine metabolic process	cytoplasm	glucosamine-6-phosphate deaminase activity|hydrolase activity			ovary(1)	1						AGATGTATTTGGCTGCCCATT	0.388													10	19					0	0	0.000673444	0	0
POLR2B	5431	broad.mit.edu	37	4	57876932	57876933	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:57876932_57876933GT>AA	uc003hcl.1	+	12	1610_1611	c.1567_1568GT>AA	c.(1567-1569)GTG>AAG	p.V523K	POLR2B_uc011cae.1_Missense_Mutation_p.V516K|POLR2B_uc011caf.1_Missense_Mutation_p.V448K|POLR2B_uc003hcm.1_Missense_Mutation_p.V16K	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	523					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)					TGTAGGACTTGTGAAGAATTTA	0.327													16	97					0	0	6.4e-05	0	0
NPFFR2	10886	broad.mit.edu	37	4	73012782	73012782	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:73012782C>T	uc003hgg.2	+	4	920	c.822C>T	c.(820-822)ATC>ATT	p.I274I	NPFFR2_uc010iig.1_Silent_p.I56I|NPFFR2_uc003hgi.2_Silent_p.I175I|NPFFR2_uc003hgh.2_Silent_p.I172I|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	274	Helical; Name=4; (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			TCCTAGCCATCACCATTATGT	0.408													8	66					0	0	0.000274275	0	0
SHROOM3	57619	broad.mit.edu	37	4	77661510	77661510	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:77661510G>A	uc011cbx.1	+	5	3137	c.2184G>A	c.(2182-2184)AGG>AGA	p.R728R	SHROOM3_uc011cbz.1_Silent_p.R552R|SHROOM3_uc003hkf.1_Silent_p.R603R|SHROOM3_uc003hkg.2_Silent_p.R506R	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	728					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			CCGAGGGGAGGACCGGTGCCT	0.677													15	77					0	0	0.000308642	0	0
PDHA2	5161	broad.mit.edu	37	4	96762141	96762141	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:96762141G>A	uc003htr.3	+	1	903	c.840G>A	c.(838-840)ATG>ATA	p.M280I		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	280					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	CCATACTGATGGAGCTGCAAA	0.458													8	34					0	0	0.000157383	0	0
ANK2	287	broad.mit.edu	37	4	114294472	114294472	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:114294472C>T	uc003ibe.3	+	45	11826	c.11726C>T	c.(11725-11727)TCC>TTC	p.S3909F	ANK2_uc003ibd.3_Missense_Mutation_p.S1815F|ANK2_uc003ibf.3_Missense_Mutation_p.S1824F|ANK2_uc011cgc.1_Missense_Mutation_p.S1000F|ANK2_uc003ibg.3_Missense_Mutation_p.S839F|ANK2_uc003ibh.3_Missense_Mutation_p.S529F|ANK2_uc011cgd.1_Missense_Mutation_p.S1211F|ANK2_uc010imr.2_5'UTR|ANK2_uc010ims.2_5'UTR	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3876					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CGGTATGTATCCTCTGAAGGC	0.383													9	19					0	0	6.40141e-05	0	0
FGA	2243	broad.mit.edu	37	4	155507125	155507125	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:155507125C>T	uc003iod.1	-	5	1514	c.1456G>A	c.(1456-1458)GAA>AAA	p.E486K	FGA_uc003ioe.1_Missense_Mutation_p.E486K|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	486	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	GAACCATCTTCGGAGGTCACC	0.493													6	26					0	0	3.59834e-05	0	0
MARCH1	55016	broad.mit.edu	37	4	164506904	164506904	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:164506904C>T	uc003iqs.1	-	6	1397	c.420G>A	c.(418-420)CGG>CGA	p.R140R	MARCH1_uc003iqr.1_Silent_p.R123R	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	140					antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				ACTGTACCTTCCGGAGGGGTT	0.453													7	38					0	0	0.000157383	0	0
ADAM29	11086	broad.mit.edu	37	4	175896987	175896987	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:175896987G>A	uc003iuc.2	+	5	981	c.311G>A	c.(310-312)GGT>GAT	p.G104D	ADAM29_uc003iud.2_Missense_Mutation_p.G104D|ADAM29_uc010irr.2_Missense_Mutation_p.G104D|ADAM29_uc011cki.1_Missense_Mutation_p.G104D	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	104					proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		TACTATCATGGTTATGTGGAA	0.438													4	12					0	0	0.000602214	0	0
ADAM29	11086	broad.mit.edu	37	4	175898651	175898651	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr4:175898651G>A	uc003iuc.2	+	5	2645	c.1975G>A	c.(1975-1977)GGA>AGA	p.G659R	ADAM29_uc003iud.2_Missense_Mutation_p.G659R|ADAM29_uc010irr.2_Missense_Mutation_p.G659R|ADAM29_uc011cki.1_Missense_Mutation_p.G659R	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	659	Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		AAAAGGCTATGGAGGTAGTGT	0.403													4	10					0	0	0.000602214	0	0
SLC6A18	348932	broad.mit.edu	37	5	1238113	1238113	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:1238113C>T	uc003jby.1	+	5	793	c.670C>T	c.(670-672)CTC>TTC	p.L224F		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	224	Helical; Name=5; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GACCATCTTTCTCATCAGAGG	0.493													22	92					0	0	0.000147802	0	0
KIAA0947	23379	broad.mit.edu	37	5	5462223	5462224	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:5462223_5462224CC>TT	uc003jdm.3	+	13	2998_2999	c.2776_2777CC>TT	c.(2776-2778)CCA>TTA	p.P926L		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	926										ovary(1)|central_nervous_system(1)	2						AAGCATTTCACCAGAAGTTTCT	0.396													13	41					0	0	6.4e-05	0	0
OSMR	9180	broad.mit.edu	37	5	38924659	38924659	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:38924659G>A	uc003jln.1	+	14	2373	c.2006G>A	c.(2005-2007)AGG>AAG	p.R669K	OSMR_uc011cpj.1_5'UTR	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	669	Fibronectin type-III 4.|Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					TCCAAGGCGAGGCAGTGCCAC	0.368													10	40					0	0	0.000673444	0	0
ITGA1	3672	broad.mit.edu	37	5	52229798	52229798	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:52229798T>C	uc003jou.2	+	23	2988	c.2936T>C	c.(2935-2937)ATT>ACT	p.I979T	ITGA1_uc003jov.2_RNA|ITGA1_uc003jow.2_Missense_Mutation_p.I510T	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	979	Extracellular (Potential).				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				ACTGAGGACATTGGAAATGAA	0.274													6	45					0	0	3.59834e-05	0	0
GZMK	3003	broad.mit.edu	37	5	54326316	54326316	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:54326316G>A	uc003jpl.1	+	3	311	c.267G>A	c.(265-267)AAG>AAA	p.K89K		NM_002104	NP_002095	P49863	GRAK_HUMAN	granzyme K precursor	89	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				CTCTCTCAAAGAATGAGGCCT	0.393													14	48					0	0	0.000151284	0	0
BDP1	55814	broad.mit.edu	37	5	70806623	70806623	+	Missense_Mutation	SNP	C	T	T	rs5868598		TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:70806623C>T	uc003kbp.1	+	17	3967	c.3704C>T	c.(3703-3705)TCC>TTC	p.S1235F	BDP1_uc003kbn.1_Missense_Mutation_p.S1235F|BDP1_uc003kbo.2_Missense_Mutation_p.S1235F	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1235	Potential.|9 X 55 AA repeats of G-R-R-X-I-S-P-X-E-N- G-X-E-E-V-K-P-X-X-E-M-E-T-D-L-K-X-T-G-R- E-X-X-X-R-E-K-T-X-E-X-X-D-A-X-E-E-I-D-X- D-L-E-E-T.|8; approximate.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		GAAGAAATTTCCCAAAGGGAA	0.398													13	47					0	0	0.00010058	0	0
BHMT	635	broad.mit.edu	37	5	78411693	78411693	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:78411693C>T	uc003kfu.3	+	2	242	c.137C>T	c.(136-138)CCT>CTT	p.P46L	BHMT_uc011cti.1_Missense_Mutation_p.P46L	NM_001713	NP_001704	Q93088	BHMT1_HUMAN	betaine-homocysteine methyltransferase	46	Hcy-binding.				protein methylation|regulation of homocysteine metabolic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.88e-45)|Epithelial(54;8.07e-41)|all cancers(79;3.51e-36)	L-Methionine(DB00134)	CCCTGGACTCCTGAAGCTGCT	0.408													9	28					0	0	0.000274275	0	0
KCNN2	3781	broad.mit.edu	37	5	113740249	113740249	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:113740249T>C	uc003kqo.2	+	3	1154	c.697T>C	c.(697-699)TAT>CAT	p.Y233H		NM_021614	NP_067627	Q9H2S1	KCNN2_HUMAN	small conductance calcium-activated potassium	233	Helical; Name=Segment S3; (Potential).					integral to membrane	calmodulin binding|small conductance calcium-activated potassium channel activity			ovary(2)	2		all_cancers(142;2.86e-05)|all_epithelial(76;9.33e-06)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Breast(839;0.159)|Lung NSC(810;0.174)|all_lung(232;0.206)		OV - Ovarian serous cystadenocarcinoma(64;1.89e-08)|Epithelial(69;2.04e-08)|all cancers(49;3.74e-06)|COAD - Colon adenocarcinoma(37;0.142)|Colorectal(14;0.195)		ACCTGGGAATTATACATTCAC	0.438													7	33					0	0	0.000673444	0	0
PHF15	23338	broad.mit.edu	37	5	133895560	133895560	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:133895560C>T	uc003kzo.1	+	5	531	c.352C>T	c.(352-354)CCG>TCG	p.P118S	PHF15_uc011cxt.1_Missense_Mutation_p.P118S|PHF15_uc003kzk.2_Missense_Mutation_p.P134S|PHF15_uc003kzl.2_Missense_Mutation_p.P118S|PHF15_uc003kzm.2_Missense_Mutation_p.P118S|PHF15_uc003kzn.2_Missense_Mutation_p.P118S	NM_015288	NP_056103	Q9NQC1	JADE2_HUMAN	PHD finger protein 15	118					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CCAGGCATCCCCGAGCAGCAC	0.617													9	30					0	0	0.000274275	0	0
GFRA3	2676	broad.mit.edu	37	5	137600194	137600194	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:137600194G>A	uc003lcn.2	-	2	275	c.135C>T	c.(133-135)CTC>CTT	p.L45L	GFRA3_uc003lco.2_Silent_p.L45L	NM_001496	NP_001487	O60609	GFRA3_HUMAN	GDNF family receptor alpha 3 preproprotein	45					peripheral nervous system development	anchored to membrane|cytoplasm|extrinsic to membrane|intracellular membrane-bounded organelle	receptor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			TCCTGGCCTGGAGACAGCTGT	0.557													20	26					0	0	0.00047179	0	0
PCDHB5	26167	broad.mit.edu	37	5	140517364	140517364	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:140517364G>A	uc003liq.2	+	1	2565	c.2348G>A	c.(2347-2349)GGG>GAG	p.G783E		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	783	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAAGAAATAGGGAAAACTGCT	0.468													25	113					0	0	0.000720815	0	0
PCDHB6	56130	broad.mit.edu	37	5	140532155	140532155	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:140532155C>T	uc003lir.2	+	1	2317	c.2317C>T	c.(2317-2319)CCT>TCT	p.P773S	PCDHB6_uc011dah.1_Missense_Mutation_p.P637S	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	773	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCCAACTTCCCTCCTCAGGG	0.483													21	72					0	0	0.000229342	0	0
TAF7	6879	broad.mit.edu	37	5	140699252	140699252	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:140699252C>T	uc003ljg.2	-	1	1100	c.360G>A	c.(358-360)AAG>AAA	p.K120K		NM_005642	NP_005633	Q15545	TAF7_HUMAN	TATA box-binding protein-associated factor 2F	120					negative regulation of histone acetylation|negative regulation of protein kinase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|spermine transport|transcription initiation from RNA polymerase II promoter	Golgi apparatus|MLL1 complex|transcription factor TFIID complex|transcription factor TFTC complex	histone acetyltransferase binding|thyroid hormone receptor binding|transcription coactivator activity|transcription regulatory region DNA binding|vitamin D receptor binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TATCCTTTTTCTTGCTTGCTT	0.438													14	97					0	0	0.000151284	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140745591	140745591	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:140745591C>T	uc003lju.1	+	1	1694	c.1694C>T	c.(1693-1695)CCC>CTC	p.P565L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Missense_Mutation_p.P565L	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	565	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATCCTGTACCCCGCCCTCCCC	0.612													18	100					0	0	0.000229342	0	0
FCHSD1	89848	broad.mit.edu	37	5	141025397	141025397	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:141025397C>T	uc003llk.2	-	13	1303	c.1252G>A	c.(1252-1254)GTG>ATG	p.V418M	FCHSD1_uc010jgg.2_Missense_Mutation_p.V101M|FCHSD1_uc003llj.2_RNA	NM_033449	NP_258260	Q86WN1	FCSD1_HUMAN	FCH and double SH3 domains 1	418									FCHSD1/BRAF(2)	skin(2)|ovary(1)|central_nervous_system(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTGCTCCACCTCATCCTGG	0.657													4	8					0	0	0.000602214	0	0
SPINK13	153218	broad.mit.edu	37	5	147653946	147653946	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:147653946A>C	uc003lpc.2	+	3	169	c.107A>C	c.(106-108)AAG>ACG	p.K36T	uc003lpb.1_Intron|SPINK13_uc010jgt.2_RNA	NM_001040129	NP_001035218	Q1W4C9	ISK13_HUMAN	serine PI Kazal type 5-like 3 precursor	36	Kazal-like.					extracellular region	serine-type endopeptidase inhibitor activity				0						AGGTGGCCTAAGGTAAATTTA	0.308													21	111					0	0	0.000720815	0	0
ARSI	340075	broad.mit.edu	37	5	149677575	149677575	+	Silent	SNP	C	T	T	rs142802678		TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:149677575C>T	uc003lrv.2	-	2	1501	c.912G>A	c.(910-912)TCG>TCA	p.S304S		NM_001012301	NP_001012301	Q5FYB1	ARSI_HUMAN	arylsulfatase family, member I precursor	304						endoplasmic reticulum|extracellular region	arylsulfatase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGCTGCCCCCCGAGAAAGTCT	0.587													12	34					0	0	0.00010058	0	0
FAM114A2	10827	broad.mit.edu	37	5	153414364	153414364	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:153414364C>T	uc003lvb.2	-	2	738	c.150G>A	c.(148-150)CGG>CGA	p.R50R	FAM114A2_uc003lvc.2_Silent_p.R50R|FAM114A2_uc003lvd.2_Silent_p.R50R|FAM114A2_uc003lve.2_5'UTR|FAM114A2_uc011dda.1_Intron	NM_018691	NP_061161	Q9NRY5	F1142_HUMAN	hypothetical protein LOC10827	50							purine nucleotide binding				0						CTGGTCTTTTCCGAGTGGAAA	0.433													16	89					0	0	0.000958276	0	0
KIF4B	285643	broad.mit.edu	37	5	154394116	154394116	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:154394116C>T	uc010jih.1	+	1	857	c.697C>T	c.(697-699)CGC>TGC	p.R233C		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	233	Kinesin-motor.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity	p.R233H(1)		ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TTGCAGCTTTCGCTCCAAGCT	0.453													14	67					0	0	0.000308642	0	0
FAM153B	202134	broad.mit.edu	37	5	175530757	175530757	+	Splice_Site	SNP	A	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:175530757A>C	uc003mdk.2	+	14	793	c.736_splice	c.e14-2	p.T246_splice		NM_001079529	NP_001072997	P0C7A2	F153B_HUMAN	hypothetical protein LOC202134											ovary(1)	1	all_cancers(89;0.00406)|Renal(175;0.000269)|Lung NSC(126;0.0103)|all_lung(126;0.0164)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)	Kidney(146;0.0965)		CTGTCGTTACAGACATCCTTG	0.448													12	64					0	0	0.000958276	0	0
HK3	3101	broad.mit.edu	37	5	176314301	176314301	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:176314301C>T	uc003mfa.2	-	12	1730	c.1638G>A	c.(1636-1638)ACG>ACA	p.T546T	HK3_uc003mez.2_Silent_p.T102T	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	546	ATP (Potential).|Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CACGGAAGTTCGTGCCCCCGA	0.642													13	49					0	0	0.000219431	0	0
ZNF454	285676	broad.mit.edu	37	5	178373936	178373936	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr5:178373936G>A	uc003mjo.1	+	4	470	c.199G>A	c.(199-201)GAA>AAA	p.E67K	ZNF454_uc010jkz.1_Missense_Mutation_p.E67K|ZNF454_uc003mjp.2_Missense_Mutation_p.R102K	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	67	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		TTCCCAGCTAGAAAAAAGGGA	0.483													23	124					0	0	0.000184323	0	0
MYLK4	340156	broad.mit.edu	37	6	2671570	2671570	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:2671570G>A	uc003mty.3	-	12	1429	c.1132C>T	c.(1132-1134)CGT>TGT	p.R378C	MYLK4_uc003mtx.3_Missense_Mutation_p.R93C	NM_001012418	NP_001012418	Q86YV6	MYLK4_HUMAN	myosin light chain kinase family, member 4	378							ATP binding|protein serine/threonine kinase activity			breast(3)|ovary(1)	4	Ovarian(93;0.0412)	all_hematologic(90;0.0897)				TCAGAGCCACGATTCTTCTTC	0.473													12	42					0	0	0.000422831	0	0
RREB1	6239	broad.mit.edu	37	6	7231149	7231149	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:7231149C>T	uc003mxc.2	+	10	3207	c.2817C>T	c.(2815-2817)ATC>ATT	p.I939I	RREB1_uc003mxb.2_Silent_p.I939I|RREB1_uc010jnx.2_Silent_p.I939I	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	939					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				ACCTGTCCATCCCCAAGAACT	0.602													5	28					0	0	0.000602214	0	0
DSP	1832	broad.mit.edu	37	6	7585419	7585419	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:7585419G>A	uc003mxp.1	+	24	8203	c.7924G>A	c.(7924-7926)GTT>ATT	p.V2642I	DSP_uc003mxq.1_Missense_Mutation_p.V2043I	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2642	Plectin 14.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GCGGGGCATCGTTGACAGCAT	0.537													26	100					0	0	0.000184323	0	0
HIVEP1	3096	broad.mit.edu	37	6	12163947	12163947	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:12163947C>T	uc003nac.2	+	9	7589	c.7410C>T	c.(7408-7410)GGC>GGT	p.G2470G	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2470					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				TTCCTATCGGCCAAATCCGCG	0.502													7	41					0	0	8.12818e-05	0	0
TRIM38	10475	broad.mit.edu	37	6	25983438	25983438	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:25983438C>T	uc003nfm.2	+	8	1356	c.921C>T	c.(919-921)CTC>CTT	p.L307L	TRIM38_uc003nfn.2_Silent_p.L289L|TRIM38_uc010jqd.2_5'UTR	NM_006355	NP_006346	O00635	TRI38_HUMAN	tripartite motif-containing 38	307	B30.2/SPRY.				positive regulation of I-kappaB kinase/NF-kappaB cascade	intracellular	signal transducer activity|zinc ion binding				0						AACTAATTCTCTCTGAGGATC	0.433													10	34					0	0	0.00010058	0	0
OR5V1	81696	broad.mit.edu	37	6	29323094	29323094	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:29323094C>T	uc011dlo.1	-	1	961	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						TGTCCTTATTCCTCAATGTGT	0.403													8	26					0	0	0.000442599	0	0
BAT3	7917	broad.mit.edu	37	6	31612966	31612967	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:31612966_31612967CC>AA	uc003nvg.3	-	10	1457_1458	c.1143_1144GG>TT	c.(1141-1146)GTGGGA>GTTTGA	p.G382*	BAT3_uc003nvf.3_Nonsense_Mutation_p.G376*|BAT3_uc003nvh.3_Nonsense_Mutation_p.G376*|BAT3_uc003nvi.3_Nonsense_Mutation_p.G376*|BAT3_uc011dnw.1_Nonsense_Mutation_p.G376*|BAT3_uc011dnx.1_Nonsense_Mutation_p.G376*|BAT3_uc003nvj.1_Nonsense_Mutation_p.G376*	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	382	4 X 29 AA approximate repeats.				apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						ACAGTGGTTCCCACATTGATCT	0.525													10	473					0	0	6.4e-05	0	0
CLIC1	1192	broad.mit.edu	37	6	31698736	31698736	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:31698736G>A	uc003nwr.2	-	6	873	c.609C>T	c.(607-609)TTC>TTT	p.F203F	DDAH2_uc003nwp.2_5'Flank|DDAH2_uc003nwq.2_5'Flank|CLIC1_uc003rje.2_Silent_p.F203F	NM_001288	NP_001279	O00299	CLIC1_HUMAN	chloride intracellular channel 1	203	GST C-terminal.				signal transduction	brush border|chloride channel complex|cytoplasm|membrane fraction|nuclear membrane|plasma membrane|soluble fraction	protein binding|voltage-gated chloride channel activity			ovary(1)|central_nervous_system(1)	2						GCACTCCCCGGAAGGCCTCGG	0.577													63	328					0	0	0.000781405	0	0
HSPA1L	3305	broad.mit.edu	37	6	31777845	31777846	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:31777845_31777846GG>TT	uc003nxh.2	-	2	2087_2088	c.1904_1905CC>AA	c.(1903-1905)CCC>CAA	p.P635Q	HSPA1L_uc010jte.2_Missense_Mutation_p.P635Q	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	635					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CTTCAATTGTGGGGCCTGTGGC	0.45													14	656					0	0	6.4e-05	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779554	31779555	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:31779554_31779555GG>TT	uc003nxh.2	-	2	378_379	c.195_196CC>AA	c.(193-198)CCCCAG>CCAAAG	p.Q66K	HSPA1L_uc010jte.2_Missense_Mutation_p.Q66K	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	66					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						ACAGTGTTCTGGGGATTCATTG	0.495													15	520					0	0	6.4e-05	0	0
TNXB	7148	broad.mit.edu	37	6	32015584	32015584	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:32015584C>T	uc003nzl.2	-	30	10447	c.10245G>A	c.(10243-10245)AGG>AGA	p.R3415R	TNXB_uc003nzg.1_5'Flank|TNXB_uc003nzh.1_5'Flank	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3462	Fibronectin type-III 26.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						ACCTGTATTTCCTACTGGGCT	0.602													16	100					0	0	0.000308642	0	0
PBX2	5089	broad.mit.edu	37	6	32155893	32155893	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:32155893C>T	uc003oav.1	-	4	855	c.584G>A	c.(583-585)AGG>AAG	p.R195K	PBX2_uc003oaw.2_Missense_Mutation_p.R195K	NM_002586	NP_002577	P40425	PBX2_HUMAN	pre-B-cell leukemia homeobox 2	195							transcription factor binding			ovary(1)	1						GCTCTGCTCCCTCAGCAGGTT	0.587													42	218					0	0	0.000781405	0	0
GRM4	2914	broad.mit.edu	37	6	34101042	34101042	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:34101042G>A	uc003oir.3	-	1	402	c.232C>T	c.(232-234)CGG>TGG	p.R78W	GRM4_uc011dsn.1_Missense_Mutation_p.R78W|GRM4_uc010jvh.2_Missense_Mutation_p.R78W|GRM4_uc010jvi.2_5'UTR|GRM4_uc010jvk.1_5'UTR	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	78	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	GCCTCCAGCCGGTGGATGCCC	0.617													8	31					0	0	0.000157383	0	0
TULP1	7287	broad.mit.edu	37	6	35478663	35478663	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:35478663C>T	uc003okv.3	-	5	486	c.474G>A	c.(472-474)AGG>AGA	p.R158R	TULP1_uc003okw.3_Silent_p.R105R	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	158					dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						CCTTGGCCCTCCTCTCCTTCA	0.498													22	92					0	0	0.000295444	0	0
CPNE5	57699	broad.mit.edu	37	6	36711495	36711495	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:36711495C>T	uc003omr.1	-	20	1601	c.1534G>A	c.(1534-1536)GGG>AGG	p.G512R	CPNE5_uc003omp.1_Missense_Mutation_p.G220R|CPNE5_uc010jwn.1_Missense_Mutation_p.G162R|CPNE5_uc003omq.1_Missense_Mutation_p.G162R	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	512	VWFA.									skin(1)	1						GCCAGCTTCCCCCGGGAGGAG	0.657													16	99					0	0	0.00074312	0	0
PGC	5225	broad.mit.edu	37	6	41712205	41712205	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:41712205G>A	uc003ora.1	-	3	307	c.258C>T	c.(256-258)TTC>TTT	p.F86F		NM_002630	NP_002621	P20142	PEPC_HUMAN	progastricsin (pepsinogen C) precursor	86					digestion|proteolysis	extracellular space	aspartic-type endopeptidase activity				0	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;0.000132)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			AAAGGACCAGGAAGTTCTGGG	0.622													16	68					0	0	0.000566183	0	0
RPL7L1	285855	broad.mit.edu	37	6	42851233	42851233	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:42851233C>T	uc003osq.1	+	3	170	c.165C>T	c.(163-165)TTC>TTT	p.F55F	RPL7L1_uc011dux.1_Silent_p.F55F|RPL7L1_uc010jxw.1_5'UTR|RPL7L1_uc003osr.1_5'UTR|RPL7L1_uc011duy.1_Silent_p.F55F|RPL7L1_uc003oss.1_5'UTR|RPL7L1_uc003ost.2_Silent_p.F55F|RPL7L1_uc003osu.2_RNA	NM_198486	NP_940888	Q6DKI1	RL7L_HUMAN	ribosomal protein L7-like 1	55					translation	large ribosomal subunit	protein binding|structural constituent of ribosome				0	Colorectal(47;0.196)		Colorectal(64;0.00237)|all cancers(41;0.00288)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.088)			TGGAATCATTCCTACATGATT	0.448													16	96					0	0	0.000422831	0	0
KLC4	89953	broad.mit.edu	37	6	43030861	43030861	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:43030861G>A	uc003otv.1	+	3	542	c.465G>A	c.(463-465)CAG>CAA	p.Q155Q	KLC4_uc003otr.1_RNA|KLC4_uc011dvd.1_Intron|KLC4_uc003otu.2_Silent_p.Q155Q|KLC4_uc003otw.1_Silent_p.Q173Q|KLC4_uc003otx.1_Silent_p.Q155Q|KLC4_uc003oty.1_Silent_p.Q155Q|KLC4_uc003otz.1_Silent_p.Q155Q	NM_201521	NP_958929	Q9NSK0	KLC4_HUMAN	kinesin-like 8 isoform a	155						cytoplasm|kinesin complex|microtubule	microtubule motor activity|protein binding			skin(3)|ovary(1)	4			all cancers(41;0.00169)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0376)|KIRC - Kidney renal clear cell carcinoma(2;0.0453)			AGCTGCGGCAGTATGATGAGG	0.617													5	38					0	0	8.12818e-05	0	0
SLC22A7	10864	broad.mit.edu	37	6	43269383	43269383	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:43269383C>T	uc003out.2	+	7	1113	c.1014C>T	c.(1012-1014)TTC>TTT	p.F338F	SLC22A7_uc010jyl.1_Silent_p.F339F|SLC22A7_uc003ous.2_Silent_p.F336F	NM_153320	NP_696961	Q9Y694	S22A7_HUMAN	solute carrier family 22 member 7 isoform b	338						basolateral plasma membrane|integral to plasma membrane|membrane fraction	anion:anion antiporter activity|sodium-independent organic anion transmembrane transporter activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			TAGACCTGTTCCGCACACCAC	0.602													8	35					0	0	0.000274275	0	0
DLK2	65989	broad.mit.edu	37	6	43420853	43420853	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:43420853C>T	uc003ova.2	-	4	370	c.161G>A	c.(160-162)GGG>GAG	p.G54E	DLK2_uc003ovb.2_Missense_Mutation_p.G54E	NM_023932	NP_076421	Q6UY11	DLK2_HUMAN	EGF-like-domain, multiple 9 precursor	54	Extracellular (Potential).|EGF-like 1.					integral to membrane	calcium ion binding				0	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			ACAGTGCAGCCCCTCCCAGCC	0.612													4	21					0	0	0.00024832	0	0
NFKBIE	4794	broad.mit.edu	37	6	44227798	44227798	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:44227798G>A	uc003oxe.1	-	5	1444	c.1419C>T	c.(1417-1419)CCC>CCT	p.P473P	SLC35B2_uc003oxd.2_5'Flank|SLC35B2_uc011dvt.1_5'Flank|SLC35B2_uc011dvu.1_5'Flank	NM_004556	NP_004547	O00221	IKBE_HUMAN	nuclear factor of kappa light polypeptide gene	473					cytoplasmic sequestering of transcription factor		protein binding			breast(2)	2	all_cancers(18;2e-05)|all_lung(25;0.00747)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			TCAGGTCCTGGGGCGTCTCAT	0.542													11	37					0	0	0.00010058	0	0
ENPP4	22875	broad.mit.edu	37	6	46111310	46111310	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:46111310T>A	uc003oxy.2	+	4	1554	c.1295T>A	c.(1294-1296)CTT>CAT	p.L432H		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	432	Cytoplasmic (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						CAGAATAGACTTTCTGTACCT	0.413													5	28					0	0	0.000602214	0	0
FAM83B	222584	broad.mit.edu	37	6	54805985	54805985	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:54805985C>T	uc003pck.2	+	5	2332	c.2216C>T	c.(2215-2217)TCC>TTC	p.S739F		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	739										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					AAATCAGTTTCCATTGCTGCT	0.398													5	7					0	0	3.59834e-05	0	0
DST	667	broad.mit.edu	37	6	56422233	56422233	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:56422233G>A	uc003pdf.2	-	53	8195	c.8167C>T	c.(8167-8169)CAG>TAG	p.Q2723*	DST_uc003pcz.3_Nonsense_Mutation_p.Q2545*|DST_uc011dxj.1_Nonsense_Mutation_p.Q2574*|DST_uc011dxk.1_Nonsense_Mutation_p.Q2585*|DST_uc003pcy.3_Nonsense_Mutation_p.Q2219*	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	4631	Spectrin 5.				cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			TCTACAGTCTGGAACTGGGTT	0.373													6	26					0	0	3.59834e-05	0	0
FILIP1	27145	broad.mit.edu	37	6	76024012	76024012	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:76024012C>T	uc003pia.2	-	5	1909	c.1536G>A	c.(1534-1536)AGG>AGA	p.R512R	FILIP1_uc003phy.1_Silent_p.R512R|FILIP1_uc003phz.2_Silent_p.R413R|FILIP1_uc010kbe.2_Silent_p.R515R|FILIP1_uc003pib.1_Silent_p.R264R	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	512	Potential.									skin(3)|ovary(1)	4						TCATATTTTTCCTTTCATCAA	0.323													8	34					0	0	0.000157383	0	0
DSE	29940	broad.mit.edu	37	6	116720663	116720663	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:116720663G>A	uc003pws.2	+	2	444	c.250G>A	c.(250-252)GAA>AAA	p.E84K	DSE_uc011ebf.1_Missense_Mutation_p.E84K|DSE_uc003pwq.1_Missense_Mutation_p.E84K|DSE_uc011ebg.1_Missense_Mutation_p.E103K|DSE_uc003pwt.2_Missense_Mutation_p.E84K	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	84					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		CAGCCCCTTGGAATACCTCCC	0.587													9	27					0	0	0.000274275	0	0
NCOA7	135112	broad.mit.edu	37	6	126242091	126242091	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:126242091C>T	uc010kes.2	+	14	2696	c.2247C>T	c.(2245-2247)ATC>ATT	p.I749I	NCOA7_uc003qae.3_Silent_p.I749I|NCOA7_uc003qah.2_Silent_p.I738I|NCOA7_uc003qai.2_Silent_p.I749I|NCOA7_uc010ket.2_Silent_p.I634I|NCOA7_uc003qak.2_Silent_p.I26I	NM_181782	NP_861447	Q8NI08	NCOA7_HUMAN	nuclear receptor coactivator 7 isoform 1	749					cell wall macromolecule catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (4;0.0803)|GBM - Glioblastoma multiforme(226;0.0193)|all cancers(137;0.237)		CATTTCAGATCATCACTGTTG	0.463													4	12					0	0	0.00024832	0	0
MYB	4602	broad.mit.edu	37	6	135507108	135507108	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:135507108C>T	uc003qfc.2	+	2	290	c.91C>T	c.(91-93)CCC>TCC	p.P31S	MYB_uc003qfh.2_Missense_Mutation_p.P31S|MYB_uc003qfi.2_Missense_Mutation_p.P31S|MYB_uc010kgi.2_Missense_Mutation_p.P31S|MYB_uc003qfq.2_Missense_Mutation_p.P31S|MYB_uc010kgj.2_Missense_Mutation_p.P31S|MYB_uc003qfo.2_Missense_Mutation_p.P31S|MYB_uc003qfu.2_Missense_Mutation_p.P31S|MYB_uc003qfl.2_RNA|MYB_uc003qfv.2_RNA|MYB_uc003qfz.2_RNA|MYB_uc003qfx.2_RNA|MYB_uc003qga.2_RNA|MYB_uc003qgb.2_RNA|MYB_uc010kgk.2_RNA|MYB_uc003qfd.2_RNA|MYB_uc003qfe.2_RNA|MYB_uc003qfg.2_RNA|MYB_uc003qff.2_RNA|MYB_uc003qfj.2_RNA|MYB_uc003qfm.2_RNA|MYB_uc003qfp.2_RNA|MYB_uc003qfn.2_RNA|MYB_uc003qfk.2_RNA|MYB_uc003qfr.2_RNA|MYB_uc003qfs.2_5'UTR|MYB_uc003qft.2_RNA|MYB_uc003qfw.2_5'UTR|MYB_uc003qfy.2_RNA|MYB_uc003qgc.2_RNA|MYB_uc003qfb.1_Missense_Mutation_p.P31S|MYB_uc003qgd.1_5'Flank	NM_005375	NP_005366	P10242	MYB_HUMAN	v-myb myeloblastosis viral oncogene homolog	31					blood coagulation|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of histone H3-K4 methylation|positive regulation of histone H3-K9 methylation|positive regulation of T-helper cell differentiation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear matrix	DNA binding|protein binding			lung(1)	1	all_epithelial(2;0.109)|Breast(56;0.158)|Colorectal(23;0.221)	Lung NSC(302;3.08e-05)|Ovarian(999;0.208)		OV - Ovarian serous cystadenocarcinoma(155;0.0079)|GBM - Glioblastoma multiforme(68;0.0117)		TGGGCTGCTTCCCAAGTCTGG	0.438			T	NFIB	adenoid cystic carcinoma								10	29					0	0	0.000673444	0	0
NMBR	4829	broad.mit.edu	37	6	142409673	142409673	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:142409673C>T	uc003qiu.2	-	1	264	c.123G>A	c.(121-123)GTG>GTA	p.V41V		NM_002511	NP_002502	P28336	NMBR_HUMAN	neuromedin B receptor	41	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	cytoplasm|integral to plasma membrane	bombesin receptor activity			central_nervous_system(3)|breast(1)	4	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;9.93e-06)|GBM - Glioblastoma multiforme(68;0.0013)		CACAGCGGATCACCAACTCCG	0.607													8	17					0	0	0.000274275	0	0
SYNE1	23345	broad.mit.edu	37	6	152651175	152651175	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:152651175C>T	uc010kiw.2	-	78	15247	c.14645G>A	c.(14644-14646)CGA>CAA	p.R4882Q	SYNE1_uc003qot.3_Missense_Mutation_p.R4811Q|SYNE1_uc003qou.3_Missense_Mutation_p.R4882Q|SYNE1_uc010kiz.2_Missense_Mutation_p.R637Q	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	4882	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTGCACCATTCGGCTCTCACA	0.532										HNSCC(10;0.0054)			5	27					0	0	0.000602214	0	0
T	6862	broad.mit.edu	37	6	166578292	166578292	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr6:166578292C>T	uc003quu.1	-	5	1157	c.664G>A	c.(664-666)GAA>AAA	p.E222K	T_uc003qut.1_Missense_Mutation_p.E222K|T_uc003quv.1_Missense_Mutation_p.E222K	NM_003181	NP_003172	O15178	BRAC_HUMAN	transcription factor T	222					anterior/posterior axis specification, embryo|mesoderm development|primitive streak formation	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2		Prostate(117;4.48e-07)|Ovarian(120;1.78e-06)|Breast(66;2.54e-06)|Lung SC(201;0.0225)|Esophageal squamous(34;0.0559)		OV - Ovarian serous cystadenocarcinoma(33;1.09e-113)|GBM - Glioblastoma multiforme(31;1.51e-108)|BRCA - Breast invasive adenocarcinoma(81;8.45e-09)|LUAD - Lung adenocarcinoma(999;0.0407)		TCTCACCTTTCCTTTGCATCA	0.318									Chordoma_Familial_Clustering_of				11	85					0	0	0.00010058	0	0
SDK1	221935	broad.mit.edu	37	7	4008918	4008919	+	Missense_Mutation	DNP	CG	AT	AT	rs144938504		TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:4008918_4008919CG>AT	uc003smx.2	+	11	1715_1716	c.1576_1577CG>AT	c.(1576-1578)CGG>ATG	p.R526M		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	526	Ig-like C2-type 5.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TGGCTCTGTCCGGATTCCTAGG	0.505													9	645					0	0	6.4e-05	0	0
MIOS	54468	broad.mit.edu	37	7	7628179	7628179	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:7628179C>T	uc003srf.2	+	8	2177	c.1869C>T	c.(1867-1869)TTC>TTT	p.F623F	MIOS_uc003srg.2_Silent_p.F158F|MIOS_uc010ktq.2_Missense_Mutation_p.S21F	NM_019005	NP_061878	Q9NXC5	MIO_HUMAN	missing oocyte, meiosis regulator, homolog	623											0						CTTGTAAATTCCTTAGTGATA	0.328													18	13					0	0	0.000295444	0	0
ITGB8	3696	broad.mit.edu	37	7	20418758	20418758	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:20418758C>T	uc003suu.2	+	4	1178	c.473C>T	c.(472-474)TCA>TTA	p.S158L	ITGB8_uc011jyh.1_Missense_Mutation_p.S23L|ITGB8_uc003sut.2_Missense_Mutation_p.S158L	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	158	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						GTCTCAGCATCAATGCACAAT	0.348													13	94					0	0	0.00010058	0	0
DNAH11	8701	broad.mit.edu	37	7	21628922	21628922	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:21628922G>A	uc003svc.2	+	12	2101	c.2070G>A	c.(2068-2070)TGG>TGA	p.W690*		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	690	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						ATAATGAATGGAAAAGTAATG	0.343									Kartagener_syndrome				8	56					0	0	0.000157383	0	0
DNAH11	8701	broad.mit.edu	37	7	21631164	21631164	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:21631164G>A	uc003svc.2	+	14	2667	c.2636G>A	c.(2635-2637)GGA>GAA	p.G879E		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	879	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TTAATCCAAGGAGATGGCTGC	0.423									Kartagener_syndrome				19	57					0	0	0.000175454	0	0
HIBADH	11112	broad.mit.edu	37	7	27565985	27565986	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:27565985_27565986CC>AA	uc003szf.2	-	8	1053_1054	c.858_859GG>TT	c.(856-861)CTGGGA>CTTTGA	p.G287*	HIBADH_uc003szg.2_Nonsense_Mutation_p.G238*|HIBADH_uc003szh.2_Nonsense_Mutation_p.G186*	NM_152740	NP_689953	P31937	3HIDH_HUMAN	3-hydroxyisobutyrate dehydrogenase precursor	287					branched chain family amino acid catabolic process|pentose-phosphate shunt|valine metabolic process	mitochondrial matrix	3-hydroxyisobutyrate dehydrogenase activity|NAD binding|phosphogluconate dehydrogenase (decarboxylating) activity			ovary(2)	2			GBM - Glioblastoma multiforme(3;0.0368)		NADH(DB00157)	TGTGCCAATCCCAGATCCTAAA	0.46													7	126					0	0	6.4e-05	0	0
TAX1BP1	8887	broad.mit.edu	37	7	27797694	27797695	+	Missense_Mutation	DNP	CC	AA	AA	rs11540484		TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:27797694_27797695CC>AA	uc003szl.2	+	3	365_366	c.207_208CC>AA	c.(205-210)TCCCCT>TCAACT	p.P70T	TAX1BP1_uc011jzo.1_Missense_Mutation_p.P70T|TAX1BP1_uc003szk.2_Missense_Mutation_p.P70T|TAX1BP1_uc011jzp.1_5'UTR	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	70					anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			TTTTATGGTCCCCTATGCCTGA	0.371													16	626					0	0	6.4e-05	0	0
PDE1C	5137	broad.mit.edu	37	7	31890260	31890260	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:31890260C>T	uc003tcm.1	-	8	1315	c.846G>A	c.(844-846)CAG>CAA	p.Q282Q	PDE1C_uc003tcn.1_Silent_p.Q282Q|PDE1C_uc003tco.1_Silent_p.Q342Q|PDE1C_uc003tcr.2_Silent_p.Q282Q|PDE1C_uc003tcs.2_Silent_p.Q282Q	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	282	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CTCACCGAGTCTGAATGTGGA	0.453													7	25					0	0	0.000274275	0	0
SEPT7	989	broad.mit.edu	37	7	35930362	35930362	+	Silent	SNP	T	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:35930362T>C	uc010kxc.2	+	10	1150	c.957T>C	c.(955-957)TAT>TAC	p.Y319Y	SEPT7_uc011kat.1_Silent_p.Y318Y|SEPT7_uc011kau.1_Silent_p.Y283Y|SEPT7_uc011kav.1_Silent_p.Y266Y|SEPT7_uc003tey.2_Silent_p.Y167Y	NM_001788	NP_001779	Q16181	SEPT7_HUMAN	cell division cycle 10 isoform 1	319					cilium morphogenesis|cytokinesis|mitosis|protein heterooligomerization|regulation of embryonic cell shape	cilium axoneme|cleavage furrow|condensed chromosome kinetochore|midbody|nucleus|septin complex|spindle|stress fiber	GTP binding|protein binding|structural molecule activity				0						CTGTGACTTATAATGGAGTTG	0.323													4	15					0	0	0.00024832	0	0
ANLN	54443	broad.mit.edu	37	7	36447420	36447420	+	Silent	SNP	T	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:36447420T>C	uc003tff.2	+	5	1155	c.951T>C	c.(949-951)CTT>CTC	p.L317L	ANLN_uc011kaz.1_Silent_p.L229L|ANLN_uc003tfg.2_Silent_p.L317L|ANLN_uc010kxe.2_Silent_p.L317L	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	317	Interaction with F-actin.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						CTGAGCTACTTCCAAAAACTC	0.403													7	33					0	0	8.12818e-05	0	0
PKD1L1	168507	broad.mit.edu	37	7	47847972	47847972	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:47847972C>T	uc003tny.1	-	52	7700	c.7700G>A	c.(7699-7701)GGA>GAA	p.G2567E	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2567	Helical; (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GAGGCTCACTCCAACCACGGA	0.512													9	53					0	0	0.000151284	0	0
GRB10	2887	broad.mit.edu	37	7	50682476	50682476	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:50682476G>A	uc003tpi.2	-	9	1117	c.1086C>T	c.(1084-1086)CTC>CTT	p.L362L	GRB10_uc003tph.3_Silent_p.L304L|GRB10_uc003tpj.2_Silent_p.L316L|GRB10_uc003tpk.2_Silent_p.L362L|GRB10_uc010kzb.2_Silent_p.L304L|GRB10_uc003tpl.2_Silent_p.L356L|GRB10_uc003tpm.2_Silent_p.L304L|GRB10_uc003tpn.2_Silent_p.L304L	NM_005311	NP_005302	Q13322	GRB10_HUMAN	growth factor receptor-bound protein 10 isoform	362	PH.				insulin receptor signaling pathway|insulin receptor signaling pathway|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway	cytosol|plasma membrane	insulin receptor binding|insulin receptor binding|SH3/SH2 adaptor activity			lung(3)|ovary(2)|upper_aerodigestive_tract(1)	6	Glioma(55;0.08)|all_neural(89;0.245)					CCTTTATGCAGAGCCCGTGGT	0.582									Russell-Silver_syndrome				18	141					0	0	0.000229342	0	0
CCT6A	908	broad.mit.edu	37	7	56128511	56128511	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:56128511C>T	uc003trl.1	+	11	1389	c.1225C>T	c.(1225-1227)CCA>TCA	p.P409S	PSPH_uc003trj.2_Intron|CCT6A_uc003trm.1_Missense_Mutation_p.P364S|CCT6A_uc011kcu.1_Missense_Mutation_p.P378S	NM_001762	NP_001753	P40227	TCPZ_HUMAN	chaperonin containing TCP1, subunit 6A isoform	409					'de novo' posttranslational protein folding	cytosol	ATP binding|unfolded protein binding			upper_aerodigestive_tract(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			CTGTGTGGTTCCAGGTGCTGG	0.438													22	55					0	0	0.000720815	0	0
C7orf42	55069	broad.mit.edu	37	7	66406954	66406954	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:66406954C>T	uc003tvk.2	+	2	366	c.102C>T	c.(100-102)TTC>TTT	p.F34F	C7orf42_uc010lah.2_RNA|C7orf42_uc003tvl.2_Silent_p.F34F	NM_017994	NP_060464	Q9NWD8	CG042_HUMAN	hypothetical protein LOC55069	34	Helical; (Potential).					integral to membrane				ovary(1)	1						CCATAGCTTTCCTGACCCTGG	0.527													11	96					0	0	0.00010058	0	0
WBSCR17	64409	broad.mit.edu	37	7	70885919	70885919	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:70885919C>T	uc003tvy.2	+	5	790	c.790C>T	c.(790-792)CAG>TAG	p.Q264*	WBSCR17_uc003tvz.2_5'UTR	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	264	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				ATCCCGCATCCAGGAAAACCG	0.537													65	148					0	0	0.000781405	0	0
MLXIPL	51085	broad.mit.edu	37	7	73010224	73010224	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:73010224C>T	uc003tyn.1	-	14	2182	c.2134G>A	c.(2134-2136)GAG>AAG	p.E712K	MLXIPL_uc003tyj.1_Missense_Mutation_p.E91K|MLXIPL_uc003tyk.1_Missense_Mutation_p.E691K|MLXIPL_uc003tyl.1_Missense_Mutation_p.E710K|MLXIPL_uc003tym.1_Missense_Mutation_p.E693K|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_Missense_Mutation_p.E618K	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	712	Leucine-zipper.				anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				TGGGCCTCCTCCTGCAAGCCC	0.627													5	21					0	0	0.000602214	0	0
MLXIPL	51085	broad.mit.edu	37	7	73021319	73021319	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:73021319G>A	uc003tyn.1	-	5	651	c.603C>T	c.(601-603)CTC>CTT	p.L201L	MLXIPL_uc003tyk.1_Silent_p.L201L|MLXIPL_uc003tyl.1_Silent_p.L201L|MLXIPL_uc003tym.1_Silent_p.L201L|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_Intron|MLXIPL_uc003tyq.1_5'Flank	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	201					anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				TAGGGGCCAGGAGGTCATCTT	0.597											OREG0018107	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	37					0	0	8.12818e-05	0	0
EIF4H	7458	broad.mit.edu	37	7	73604036	73604036	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:73604036C>T	uc003uad.1	+	3	289	c.281C>T	c.(280-282)TCC>TTC	p.S94F	RFC2_uc011kfa.1_Intron|EIF4H_uc011kfg.1_Missense_Mutation_p.S94F|EIF4H_uc010lbm.2_Missense_Mutation_p.S94F|EIF4H_uc003uae.1_Missense_Mutation_p.S94F|EIF4H_uc003uaf.1_RNA|MIR590_hsa-mir-590|MI0003602_5'Flank	NM_022170	NP_071496	Q15056	IF4H_HUMAN	eukaryotic translation initiation factor 4H	94	RRM.				interspecies interaction between organisms|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex|perinuclear region of cytoplasm	nucleotide binding|protein binding|translation initiation factor activity				0						GAAGTGGATTCCCTTAAGGAA	0.398													11	60					0	0	0.000673444	0	0
PCLO	27445	broad.mit.edu	37	7	82546123	82546123	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:82546123G>A	uc003uhx.2	-	7	11468	c.11179C>T	c.(11179-11181)CCA>TCA	p.P3727S	PCLO_uc003uhv.2_Missense_Mutation_p.P3727S|PCLO_uc010lec.2_Missense_Mutation_p.P692S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3658					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCAGGAGGTGGATTTGGCAGA	0.423													6	21					0	0	0.000274275	0	0
PCLO	27445	broad.mit.edu	37	7	82581597	82581597	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:82581597C>T	uc003uhx.2	-	5	8961	c.8672G>A	c.(8671-8673)GGA>GAA	p.G2891E	PCLO_uc003uhv.2_Missense_Mutation_p.G2891E|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2822					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATCAGTGATTCCCTGGGATAC	0.453													11	62					0	0	0.000673444	0	0
SEMA3E	9723	broad.mit.edu	37	7	82997307	82997307	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:82997307G>A	uc003uhy.1	-	17	2389	c.1923C>T	c.(1921-1923)TTC>TTT	p.F641F		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	641	Ig-like C2-type.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				GTAACCTTAGGAAGAGTAAAC	0.418													6	39					0	0	0.000274275	0	0
SEMA3E	9723	broad.mit.edu	37	7	83029395	83029395	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:83029395C>T	uc003uhy.1	-	11	1781	c.1315G>A	c.(1315-1317)GAT>AAT	p.D439N		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	439	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				TCCACTCGATCTACTGCTATT	0.368													5	38					0	0	0.000602214	0	0
GRM3	2913	broad.mit.edu	37	7	86479836	86479836	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:86479836G>A	uc003uid.2	+	5	3641	c.2542G>A	c.(2542-2544)GGA>AGA	p.G848R	GRM3_uc010lef.2_Nonsense_Mutation_p.W490*|GRM3_uc010leg.2_Missense_Mutation_p.G720R|GRM3_uc010leh.2_Missense_Mutation_p.G440R	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	848	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane		p.G848E(1)		lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CAGTGTCAGTGGAACTGGGAC	0.478													8	19					0	0	0.000442599	0	0
SAMD9	54809	broad.mit.edu	37	7	92730882	92730882	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:92730882G>A	uc003umf.2	-	3	4785	c.4529C>T	c.(4528-4530)TCC>TTC	p.S1510F	SAMD9_uc003umg.2_Missense_Mutation_p.S1510F	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1510						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			CTGCCACAAGGAATTAATATC	0.358													7	29					0	0	8.12818e-05	0	0
ZCWPW1	55063	broad.mit.edu	37	7	100004335	100004335	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:100004335G>A	uc003uut.2	-	12	1400	c.1152C>T	c.(1150-1152)TCC>TCT	p.S384S	ZCWPW1_uc011kjq.1_Silent_p.S264S|ZCWPW1_uc003uur.2_Silent_p.S264S|ZCWPW1_uc003uus.2_Silent_p.S264S|ZCWPW1_uc011kjr.1_Silent_p.S384S|ZCWPW1_uc003uuu.1_Silent_p.S385S|ZCWPW1_uc011kjp.1_RNA	NM_017984	NP_060454	Q9H0M4	ZCPW1_HUMAN	zinc finger, CW type with PWWP domain 1	384							zinc ion binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					ATAGCTCCAGGGACAGCTCCT	0.418													9	73					0	0	6.40141e-05	0	0
C7orf51	222950	broad.mit.edu	37	7	100087049	100087049	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:100087049G>A	uc003uvd.1	+	4	1864	c.1705G>A	c.(1705-1707)GCT>ACT	p.A569T	C7orf51_uc003uve.1_Missense_Mutation_p.A351T	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	569										skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GAGCCTCAAGGCTGGGGGGGT	0.647													24	28					0	0	0.000720815	0	0
Unknown	0	broad.mit.edu	37	7	100551902	100551903	+	RNA	DNP	GG	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:100551902_100551903GG>TT	uc003uxk.1	+	1		c.1153_1154GG>TT			uc003uxl.1_Missense_Mutation_p.R118I					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		TCTTTCACTAGGGGAAGTACGT	0.436													17	868					0	0	6.4e-05	0	0
RELN	5649	broad.mit.edu	37	7	103206798	103206798	+	Silent	SNP	T	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:103206798T>C	uc003vca.2	-	33	4969	c.4809A>G	c.(4807-4809)CAA>CAG	p.Q1603Q	RELN_uc010liz.2_Silent_p.Q1603Q	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1603					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GAAATCCAGTTTGAGAGCTGT	0.403													8	14					0	0	0.000157383	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519565	113519565	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:113519565C>T	uc010ljy.1	-	4	1613	c.1582G>A	c.(1582-1584)GAA>AAA	p.E528K		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	528					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CTTTGTTTTTCATTAACACCT	0.348													5	7					0	0	3.59834e-05	0	0
KCND2	3751	broad.mit.edu	37	7	119915143	119915143	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:119915143G>A	uc003vjj.1	+	1	1422	c.457G>A	c.(457-459)GAT>AAT	p.D153N		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	153	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					GGACGACGCGGATACCGACAC	0.632													11	73					0	0	6.40141e-05	0	0
CPA1	1357	broad.mit.edu	37	7	130027771	130027771	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:130027771C>T	uc003vpx.2	+	10	1251	c.1179C>T	c.(1177-1179)GCC>GCT	p.A393A		NM_001868	NP_001859	P15085	CBPA1_HUMAN	carboxypeptidase A1 precursor	393					proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					TGCTGCCAGCCTCCCAGATCA	0.587													51	155					0	0	0.000781405	0	0
CPA1	1357	broad.mit.edu	37	7	130027801	130027801	+	Silent	SNP	G	C	C	rs113061008	byFrequency	TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:130027801G>C	uc003vpx.2	+	10	1281	c.1209G>C	c.(1207-1209)ACG>ACC	p.T403T		NM_001868	NP_001859	P15085	CBPA1_HUMAN	carboxypeptidase A1 precursor	403					proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					CCAAGGAGACGTGGCTGGCGC	0.607													33	166					0	0	0.000491102	0	0
HIPK2	28996	broad.mit.edu	37	7	139416787	139416787	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:139416787G>A	uc003vvf.3	-	2	221	c.47C>T	c.(46-48)TCC>TTC	p.S16F	HIPK2_uc003vvd.3_Missense_Mutation_p.S16F	NM_022740	NP_073577	Q9H2X6	HIPK2_HUMAN	homeodomain interacting protein kinase 2 isoform	16					apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation of BMP signaling pathway|positive regulation of JNK cascade|positive regulation of transforming growth factor beta receptor signaling pathway|SMAD protein signal transduction|transcription, DNA-dependent|virus-host interaction	centrosome|nuclear membrane|PML body	ATP binding|protein serine/threonine kinase activity|SMAD binding|transcription corepressor activity|virion binding			ovary(3)|central_nervous_system(3)|skin(1)	7	Melanoma(164;0.205)					GGTGTGAGGGGAGAAAACTTG	0.463													14	30					0	0	0.000422831	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				15	19					0	0	0.000422831	0	0
TRPV5	56302	broad.mit.edu	37	7	142612196	142612196	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:142612196A>C	uc003wby.1	-	11	1571	c.1307T>G	c.(1306-1308)GTG>GGG	p.V436G		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	436	Helical; (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					GGTCACCAGCACCAGGGAGGC	0.557													8	9					0	0	0.000157383	0	0
PDIA4	9601	broad.mit.edu	37	7	148701009	148701009	+	Silent	SNP	G	A	A	rs142824594		TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:148701009G>A	uc003wff.2	-	10	2097	c.1815C>T	c.(1813-1815)TTC>TTT	p.F605F		NM_004911	NP_004902	P13667	PDIA4_HUMAN	protein disulfide isomerase A4 precursor	605	Thioredoxin 3.				cell redox homeostasis|glycerol ether metabolic process|protein secretion	endoplasmic reticulum lumen|melanosome	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			lung(5)|ovary(1)	6	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00385)			CACTGGGGGCGAAGTAGATGG	0.527													12	68					0	0	0.000151284	0	0
ZNF786	136051	broad.mit.edu	37	7	148769496	148769496	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:148769496G>A	uc003wfh.2	-	4	505	c.368C>T	c.(367-369)TCC>TTC	p.S123F	ZNF786_uc011kuk.1_Missense_Mutation_p.S86F|ZNF786_uc003wfi.2_Missense_Mutation_p.S37F	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	123					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			GGATCCAAAGGAACACTGGCT	0.507													17	16					0	0	0.000566183	0	0
SSPO	23145	broad.mit.edu	37	7	149521519	149521519	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:149521519C>T	uc010lpk.2	+	96	13598	c.13598C>T	c.(13597-13599)CCC>CTC	p.P4533L	SSPO_uc010lpm.1_RNA|SSPO_uc003wgg.2_Intron|SSPO_uc003wgh.2_RNA|SSPO_uc003wgi.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4533					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GAGTGGTCGCCCTGTGGGCCC	0.687													4	15					0	0	0.000602214	0	0
SHH	6469	broad.mit.edu	37	7	155599242	155599243	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:155599242_155599243CC>TT	uc003wmk.1	-	2	460_461	c.309_310GG>AA	c.(307-312)AAGGAC>AAAAAC	p.D104N	SHH_uc003wmh.1_RNA|SHH_uc003wmi.1_Missense_Mutation_p.D17N|SHH_uc003wmj.1_Missense_Mutation_p.D17N	NM_000193	NP_000184	Q15465	SHH_HUMAN	sonic hedgehog preproprotein	104					androgen metabolic process|axon guidance|branching involved in ureteric bud morphogenesis|CD4-positive or CD8-positive, alpha-beta T cell lineage commitment|embryonic digit morphogenesis|hindbrain development|intein-mediated protein splicing|lymphoid progenitor cell differentiation|metanephric mesenchymal cell proliferation involved in metanephros development|midbrain development|negative regulation of cell migration|negative regulation of kidney smooth muscle cell differentiation|negative regulation of ureter smooth muscle cell differentiation|negative thymic T cell selection|neural crest cell migration|neuroblast proliferation|patterning of blood vessels|positive regulation of alpha-beta T cell differentiation|positive regulation of immature T cell proliferation in thymus|positive regulation of kidney smooth muscle cell differentiation|positive regulation of mesenchymal cell proliferation involved in ureter development|positive regulation of T cell differentiation in thymus|positive regulation of ureter smooth muscle cell differentiation|positive thymic T cell selection|proteolysis|sclerotome development|stem cell development|thymus development|vasculogenesis|ventral midline development	cell surface|extracellular space|membrane raft|plasma membrane	calcium ion binding|laminin-1 binding|peptidase activity|signal transducer activity|zinc ion binding			central_nervous_system(3)|lung(1)	4	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00882)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TTCAACTTGTCCTTACACCTCT	0.634													11	52					0	0	6.4e-05	0	0
CSMD1	64478	broad.mit.edu	37	8	2830697	2830697	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr8:2830697G>A	uc011kwk.1	-	57	9258	c.8868C>T	c.(8866-8868)TCC>TCT	p.S2956S	CSMD1_uc011kwj.1_Silent_p.S2285S|CSMD1_uc010lrg.2_Silent_p.S966S	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2956	Extracellular (Potential).|Sushi 22.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGCGTTCAGGGGAGCCCCTCA	0.547													7	21					0	0	0.000157383	0	0
RP1L1	94137	broad.mit.edu	37	8	10466293	10466293	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr8:10466293C>T	uc003wtc.2	-	4	5544	c.5315G>A	c.(5314-5316)AGA>AAA	p.R1772K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1772					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TTTCCCTTCTCTCTCCTGAGC	0.577													22	105					0	0	0.000878237	0	0
XKR4	114786	broad.mit.edu	37	8	56435900	56435900	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr8:56435900C>T	uc003xsf.2	+	3	1099	c.1067C>T	c.(1066-1068)GCC>GTC	p.A356V		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	356						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			TACCAGAAGGCCCTCCGGGAC	0.572													6	21					0	0	3.59834e-05	0	0
KCNB2	9312	broad.mit.edu	37	8	73480322	73480322	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr8:73480322C>T	uc003xzb.2	+	2	941	c.353C>T	c.(352-354)TCG>TTG	p.S118L		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	118	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TGTGCACTTTCGTTTGGCCAA	0.423													17	21					0	0	0.00074312	0	0
GEM	2669	broad.mit.edu	37	8	95262715	95262715	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr8:95262715C>T	uc003ygj.2	-	5	963	c.714G>A	c.(712-714)CAG>CAA	p.Q238Q	GEM_uc003ygi.2_Silent_p.Q238Q	NM_005261	NP_005252	P55040	GEM_HUMAN	GTP-binding mitogen-induced T-cell protein	238					cell surface receptor linked signaling pathway|immune response|small GTPase mediated signal transduction	internal side of plasma membrane	calmodulin binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding			lung(1)	1	Breast(36;4.65e-06)	Myeloproliferative disorder(644;0.204)	BRCA - Breast invasive adenocarcinoma(8;0.00691)			GAAGGCGCACCTGTCGCACAA	0.582													5	30					0	0	3.59834e-05	0	0
CCNE2	9134	broad.mit.edu	37	8	95906253	95906254	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr8:95906253_95906254GG>TT	uc003yhc.2	-	3	217_218	c.108_109CC>AA	c.(106-111)ACCCAG>ACAAAG	p.Q37K	C8orf38_uc003yhe.1_5'Flank|C8orf38_uc003yhf.2_5'Flank|CCNE2_uc003yhd.2_Missense_Mutation_p.Q37K	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	37					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					TAAATCACCTGGGTAGTTTTCC	0.465													16	669					0	0	6.4e-05	0	0
KCNQ3	3786	broad.mit.edu	37	8	133187715	133187715	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr8:133187715G>A	uc003ytj.2	-	5	1143	c.918C>T	c.(916-918)GCC>GCT	p.A306A	KCNQ3_uc010mdt.2_Silent_p.A306A	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	306					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CCCACCACAGGGCATCTGCAT	0.502													14	59					0	0	0.00074312	0	0
COL22A1	169044	broad.mit.edu	37	8	139734322	139734322	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr8:139734322C>T	uc003yvd.2	-	26	2705	c.2258G>A	c.(2257-2259)GGA>GAA	p.G753E	COL22A1_uc011ljo.1_Missense_Mutation_p.G53E	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	753	Collagen-like 5.|Pro-rich.|Gly-rich.			GKDGPNGPPGPPGTK -> CILAAKTAPGLKQLN (in Ref. 2; AAH42075).	cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CCCGTCCTTTCCAGGGGGTCC	0.478										HNSCC(7;0.00092)			3	9					0	0	0.00024832	0	0
PARP10	84875	broad.mit.edu	37	8	145057685	145057685	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr8:145057685G>A	uc003zal.3	-	8	2180	c.2072C>T	c.(2071-2073)CCC>CTC	p.P691L	PARP10_uc003zak.3_Missense_Mutation_p.P388L|PARP10_uc011lku.1_Missense_Mutation_p.P703L|PARP10_uc011lkv.1_RNA|PARP10_uc003zam.2_Missense_Mutation_p.P682L	NM_032789	NP_116178	Q53GL7	PAR10_HUMAN	poly (ADP-ribose) polymerase family, member 10	691	Glu-rich.					Golgi apparatus|nucleolus	NAD+ ADP-ribosyltransferase activity|nucleotide binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)|pancreas(1)	6	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CTCCAACGGGGGCTGCTCCAG	0.672													4	17					0	0	3.59834e-05	0	0
GPAA1	8733	broad.mit.edu	37	8	145138652	145138652	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr8:145138652G>A	uc003zax.2	+	4	512	c.402G>A	c.(400-402)CGG>CGA	p.R134R	GPAA1_uc003zav.1_Silent_p.R12R|GPAA1_uc003zaw.1_Silent_p.R74R	NM_003801	NP_003792	O43292	GPAA1_HUMAN	glycosylphosphatidylinositol anchor attachment	134	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|protein complex assembly|protein retention in ER lumen	GPI-anchor transamidase complex	tubulin binding				0	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.02e-40)|all cancers(56;2.11e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCATCCTGCGGGCCCCGCGTG	0.657													6	37					0	0	0.000274275	0	0
PTPRD	5789	broad.mit.edu	37	9	8504363	8504363	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr9:8504363C>T	uc003zkk.2	-	22	2431	c.1720G>A	c.(1720-1722)GGA>AGA	p.G574R	PTPRD_uc003zkp.2_Missense_Mutation_p.G574R|PTPRD_uc003zkq.2_Missense_Mutation_p.G574R|PTPRD_uc003zkr.2_Missense_Mutation_p.G568R|PTPRD_uc003zks.2_Missense_Mutation_p.G564R|PTPRD_uc003zkl.2_Missense_Mutation_p.G574R|PTPRD_uc003zkm.2_Missense_Mutation_p.G561R|PTPRD_uc003zkn.2_Missense_Mutation_p.G574R|PTPRD_uc003zko.2_Missense_Mutation_p.G571R	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	574	Fibronectin type-III 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GGTTTCAGTCCTTGCAGCCTA	0.443										TSP Lung(15;0.13)			9	50					0	0	0.000151284	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971029	21971029	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr9:21971029C>T	uc003zpk.2	-	2	541	c.329G>A	c.(328-330)TGG>TAG	p.W110*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Silent_p.L165L	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	110	ANK 4.				cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.W110*(38)|p.?(13)|p.H83fs*2(2)|p.W110fs*9(1)|p.D105fs*8(1)|p.A68fs*3(1)|p.R107fs*33(1)|p.W110fs*36(1)|p.W110C(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		CAGACGGCCCCAGGCATCGCG	0.731		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			92	94					0	0	0.000781405	0	0
TMC1	117531	broad.mit.edu	37	9	75387400	75387400	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr9:75387400C>T	uc004aiz.1	+	13	1353	c.813C>T	c.(811-813)TTC>TTT	p.F271F	TMC1_uc010moz.1_Silent_p.F229F|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_Silent_p.F125F|TMC1_uc010mpa.1_Silent_p.F125F	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	271	Extracellular (Potential).				sensory perception of sound	integral to membrane				ovary(1)	1						GGATGAATTTCAGGTTGCCGC	0.398													38	37					0	0	0.000228196	0	0
KIAA1529	57653	broad.mit.edu	37	9	100122382	100122382	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr9:100122382C>T	uc011lut.1	+	38	4804	c.4031C>T	c.(4030-4032)ACC>ATC	p.T1344I	KIAA1529_uc004axe.1_Missense_Mutation_p.T1176I|KIAA1529_uc004axg.1_Missense_Mutation_p.T1205I|KIAA1529_uc004axh.1_RNA|KIAA1529_uc011luw.1_Missense_Mutation_p.T361I	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				CTGGTCTTTACCGTAAGGAAT	0.547													18	93					0	0	0.000175454	0	0
COL15A1	1306	broad.mit.edu	37	9	101765859	101765859	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr9:101765859G>A	uc004azb.1	+	8	1396	c.1190G>A	c.(1189-1191)GGG>GAG	p.G397E		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	397	Nonhelical region 1 (NC1).|1.|4 X tandem repeats.				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				CCAGAGGAAGGGGTCACTCCA	0.607													6	37					0	0	3.59834e-05	0	0
OR13C4	138804	broad.mit.edu	37	9	107289083	107289083	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr9:107289083C>T	uc011lvn.1	-	1	408	c.408G>A	c.(406-408)ATG>ATA	p.M136I		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CCACCTTGTTCATGATGATGG	0.458													12	19					0	0	0.00010058	0	0
RGS3	5998	broad.mit.edu	37	9	116269666	116269666	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr9:116269666G>A	uc004bhq.2	+	14	1394	c.1185G>A	c.(1183-1185)TCG>TCA	p.S395S	RGS3_uc004bhr.2_Silent_p.S283S|RGS3_uc004bhs.2_Silent_p.S285S|RGS3_uc004bht.2_Silent_p.S114S|RGS3_uc010muy.2_Silent_p.S114S|RGS3_uc004bhu.2_Silent_p.S21S	NM_144488	NP_652759	P49796	RGS3_HUMAN	regulator of G-protein signalling 3 isoform 6	395					inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	cytosol|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3						CCTGCAAGTCGACACATGACC	0.647													22	45					0	0	0.000375601	0	0
LRRC8A	56262	broad.mit.edu	37	9	131670604	131670604	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr9:131670604C>T	uc004bwl.3	+	3	1415	c.1161C>T	c.(1159-1161)TCC>TCT	p.S387S	LRRC8A_uc010myp.2_Silent_p.S387S|LRRC8A_uc010myq.2_Silent_p.S387S	NM_019594	NP_062540	Q8IWT6	LRC8A_HUMAN	leucine rich repeat containing 8 family, member	387	LRR 1.				pre-B cell differentiation	integral to membrane					0						CGCTCTACTCCAAGCGCTTCG	0.587													27	48					0	0	0.000491102	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136323178	136323178	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr9:136323178G>A	uc004cdv.3	+	28	4483	c.4039G>A	c.(4039-4041)GGC>AGC	p.G1347S	ADAMTS13_uc004cdp.3_Intron|ADAMTS13_uc004cdt.1_Missense_Mutation_p.G1291S|ADAMTS13_uc004cdu.1_Missense_Mutation_p.G1260S|ADAMTS13_uc004cdw.3_Missense_Mutation_p.G1291S|ADAMTS13_uc004cdx.3_Missense_Mutation_p.G1260S|ADAMTS13_uc004cdz.3_Missense_Mutation_p.G1017S|ADAMTS13_uc004cea.1_3'UTR|ADAMTS13_uc004ceb.3_Missense_Mutation_p.G143S|C9orf7_uc011mdg.1_5'Flank|C9orf7_uc004cec.2_5'Flank|C9orf7_uc011mdh.1_5'Flank|C9orf7_uc011mdi.1_5'Flank|C9orf7_uc010nan.2_5'Flank	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1347	CUB 2.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		CACCAACATGGGCGCTGGGAC	0.617													7	33					0	0	8.12818e-05	0	0
COL5A1	1289	broad.mit.edu	37	9	137623968	137623968	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr9:137623968G>A	uc004cfe.2	+	9	1766	c.1384G>A	c.(1384-1386)GAG>AAG	p.E462K		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	462	Interrupted collagenous region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		AGCGATTATCGAGCCGGTGAG	0.582													18	66					0	0	0.00074312	0	0
MAP3K15	389840	broad.mit.edu	37	X	19413209	19413209	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:19413209C>A	uc004czk.1	-	17	2246	c.609G>T	c.(607-609)CAG>CAT	p.Q203H	MAP3K15_uc004czj.1_Missense_Mutation_p.Q163H	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	728	Protein kinase.						ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					CTCCAGGCACCTGCTCCATAA	0.463													14	50					9.31168e-06	0.000100719	0.000151284	1	0
CXorf23	256643	broad.mit.edu	37	X	19983592	19983592	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:19983592G>A	uc004czp.2	-	3	844	c.844C>T	c.(844-846)CGT>TGT	p.R282C	CXorf23_uc010nfn.2_RNA|CXorf23_uc011mjg.1_5'UTR|CXorf23_uc004czo.2_Missense_Mutation_p.R232C	NM_198279	NP_938020	A2AJT9	CX023_HUMAN	hypothetical protein LOC256643	282						mitochondrion				lung(1)|skin(1)	2						CGTTTGTGACGATAGTCATAG	0.453													11	26					0	0	0.000151284	0	0
CXorf21	80231	broad.mit.edu	37	X	30577915	30577915	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:30577915G>A	uc004dcg.1	-	3	834	c.558C>T	c.(556-558)TCC>TCT	p.S186S		NM_025159	NP_079435	Q9HAI6	CX021_HUMAN	hypothetical protein LOC80231	186										ovary(1)	1						TTCTCCAATAGGATGAGTACC	0.443													4	26					0	0	0.00024832	0	0
FAM47A	158724	broad.mit.edu	37	X	34148193	34148193	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:34148193C>T	uc004ddg.2	-	1	2236	c.2203G>A	c.(2203-2205)GGA>AGA	p.G735R		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	735										ovary(4)|central_nervous_system(1)	5						GCAATTGGTCCATAAAGATCG	0.428													23	77					0	0	0.000586117	0	0
BCOR	54880	broad.mit.edu	37	X	39923809	39923809	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:39923809G>A	uc004den.3	-	7	3574	c.3282C>T	c.(3280-3282)GCC>GCT	p.A1094A	BCOR_uc004dep.3_Silent_p.A1094A|BCOR_uc004deo.3_Silent_p.A1076A|BCOR_uc010nhb.2_5'Flank|BCOR_uc004dem.3_Silent_p.A1094A	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	1094					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						TGTCCTCTGGGGCTTCAAAGG	0.577													18	36					0	0	0.000175454	0	0
SSX3	10214	broad.mit.edu	37	X	48214155	48214155	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:48214155G>A	uc004djd.1	-	3	190	c.96C>T	c.(94-96)TTC>TTT	p.F32F	SSX3_uc004dje.2_Silent_p.F32F|SSX3_uc010nic.2_Silent_p.F32F	NM_021014	NP_066294	Q99909	SSX3_HUMAN	synovial sarcoma, X breakpoint 3 isoform a	32	KRAB-related.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						CTTCCTTAGAGAAGTATTTGG	0.408													8	35					0	0	0.000157383	0	0
HDAC6	10013	broad.mit.edu	37	X	48665055	48665055	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:48665055C>T	uc011mmi.1	+	8	669	c.574C>T	c.(574-576)CTC>TTC	p.L192F	HDAC6_uc004dks.1_Missense_Mutation_p.L192F|HDAC6_uc010nig.1_Missense_Mutation_p.L40F|HDAC6_uc004dkt.1_Missense_Mutation_p.L192F|HDAC6_uc004dku.3_3'UTR|HDAC6_uc011mmj.1_Missense_Mutation_p.L137F|HDAC6_uc011mmk.1_Missense_Mutation_p.L173F	NM_006044	NP_006035	Q9UBN7	HDAC6_HUMAN	histone deacetylase 6	192	Histone deacetylase 1.				aggresome assembly|cellular response to hydrogen peroxide|Hsp90 deacetylation|lysosome localization|macroautophagy|misfolded or incompletely synthesized protein catabolic process|negative regulation of proteolysis|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|polyubiquitinated misfolded protein transport|positive regulation of apoptosis|positive regulation of cellular chaperone-mediated protein complex assembly|positive regulation of epithelial cell migration|positive regulation of receptor biosynthetic process|positive regulation of signal transduction|regulation of androgen receptor signaling pathway|regulation of receptor activity|response to growth factor stimulus|response to toxin|transcription, DNA-dependent|tubulin deacetylation	aggresome|caveola|cell leading edge|cytosol|histone deacetylase complex|microtubule associated complex|perinuclear region of cytoplasm	actin binding|alpha-tubulin binding|beta-catenin binding|dynein complex binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|Hsp90 protein binding|microtubule binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|polyubiquitin binding|tau protein binding|tubulin deacetylase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4					Vorinostat(DB02546)	AGGCTCTGTCCTCAGGCTGGT	0.532													7	24					0	0	0.000274275	0	0
NUDT10	170685	broad.mit.edu	37	X	51076066	51076066	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:51076066C>T	uc004dph.2	+	2	469	c.249C>T	c.(247-249)TTC>TTT	p.F83F	NUDT10_uc004dpi.3_Silent_p.F83F	NM_153183	NP_694853	Q8NFP7	NUD10_HUMAN	nudix-type motif 10	83	Nudix hydrolase.					cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					TGGGCGTCTTCGAACAGAACC	0.617													10	25					0	0	0.000673444	0	0
CITED1	4435	broad.mit.edu	37	X	71521587	71521587	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:71521587G>A	uc011mqd.1	-	3	723	c.568C>T	c.(568-570)CCA>TCA	p.P190S	CITED1_uc011mqc.1_Missense_Mutation_p.P216S|CITED1_uc004eas.2_Missense_Mutation_p.P190S|CITED1_uc004eat.2_Missense_Mutation_p.P190S	NM_001144887	NP_001138359	Q99966	CITE1_HUMAN	melanocyte-specific gene 1 isoform 1	190					apoptosis|branching involved in ureteric bud morphogenesis|cell proliferation|melanin biosynthetic process|melanocyte differentiation|mesenchymal to epithelial transition|metanephros development|negative regulation of neuron apoptosis|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|nucleocytoplasmic transport|placenta development|positive regulation of anti-apoptosis|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of transcription from RNA polymerase II promoter|response to cAMP|response to estrogen stimulus|response to insulin stimulus|response to interferon-gamma|response to interleukin-1|response to interleukin-11|response to interleukin-2|response to interleukin-4|response to interleukin-6|response to interleukin-9|response to lipopolysaccharide|response to parathyroid hormone stimulus|response to transforming growth factor beta stimulus|SMAD protein signal transduction|transforming growth factor beta receptor signaling pathway	cytosol|nucleus	chromatin binding|co-SMAD binding|LBD domain binding|protein C-terminus binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding				0	Renal(35;0.156)					CAGCTAGATGGAAAGTCCGCA	0.483													18	28					0	0	0.000295444	0	0
NAP1L2	4674	broad.mit.edu	37	X	72433836	72433836	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:72433836C>T	uc004ebi.2	-	1	849	c.493G>A	c.(493-495)GAA>AAA	p.E165K	NAP1L2_uc011mqj.1_Missense_Mutation_p.E23K	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	165	Glu-rich (acidic).				nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					TATTCACATTCCTCTTCTGTA	0.378													41	57					0	0	0.000680045	0	0
XIST	7503	broad.mit.edu	37	X	73065144	73065144	+	RNA	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:73065144G>A	uc004ebm.1	-	1		c.7445C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CCAGGAAAAGGGGCCTTGGTG	0.493													16	32					0	0	0.000566183	0	0
KIAA2022	340533	broad.mit.edu	37	X	73965442	73965442	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:73965442C>T	uc004eby.2	-	2	661	c.44G>A	c.(43-45)GGA>GAA	p.G15E		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	15					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						AGTGTTTTCTCCGTTGGCTGA	0.358													4	13					0	0	0.00024832	0	0
DRP2	1821	broad.mit.edu	37	X	100505941	100505941	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:100505941C>T	uc004egz.2	+	16	2103	c.1734C>T	c.(1732-1734)TTC>TTT	p.F578F	DRP2_uc011mrh.1_Silent_p.F500F	NM_001939	NP_001930	Q13474	DRP2_HUMAN	dystrophin related protein 2	578					central nervous system development	cytoplasm|cytoskeleton	zinc ion binding			ovary(2)	2						CATCCCAGTTCCTGGAGTGGG	0.537													20	41					0	0	0.000175454	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106083958	106083958	+	Silent	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:106083958C>T	uc004emo.2	+	10	1728	c.1563C>T	c.(1561-1563)TCC>TCT	p.S521S	MORC4_uc004emp.3_Intron|TBC1D8B_uc004emn.2_Silent_p.S521S	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	521	Rab-GAP TBC.					intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TTGAGCAGTCCTTAGGGACCT	0.433													8	18					0	0	0.000673444	0	0
GPR119	139760	broad.mit.edu	37	X	129519283	129519283	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:129519283G>A	uc011muv.1	-	1	139	c.139C>T	c.(139-141)CTG>TTG	p.L47L		NM_178471	NP_848566	Q8TDV5	GP119_HUMAN	G protein-coupled receptor 119	47	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	lipid binding			ovary(2)	2						GCCACAGCCAGATTCAAGGTG	0.552													26	63					0	0	0.00047179	0	0
FGF13	2258	broad.mit.edu	37	X	137715099	137715099	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:137715099C>T	uc004fam.2	-	5	1312	c.650G>A	c.(649-651)CGA>CAA	p.R217Q	FGF13_uc004fan.2_Missense_Mutation_p.R164Q|FGF13_uc011mwi.1_Missense_Mutation_p.R198Q|FGF13_uc004faq.2_Missense_Mutation_p.R227Q|FGF13_uc004far.2_Missense_Mutation_p.R198Q|FGF13_uc011mwj.1_Missense_Mutation_p.R227Q|FGF13_uc011mwk.1_Missense_Mutation_p.R171Q	NM_004114	NP_004105	Q92913	FGF13_HUMAN	fibroblast growth factor 13 isoform 1	217					cell-cell signaling|MAPKKK cascade|nervous system development	cytoplasm|nucleus	growth factor activity|protein kinase activator activity			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GCTTCCAGATCGGGAGAACTC	0.517													11	26					0	0	0.00010058	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993513	140993513	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:140993513C>T	uc004fbt.2	+	4	609	c.323C>T	c.(322-324)TCC>TTC	p.S108F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	108							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GGGAAGGACTCCCTGTCTCCT	0.547										HNSCC(15;0.026)			26	24					0	0	0.000720815	0	0
AFF2	2334	broad.mit.edu	37	X	148039955	148039955	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:148039955C>A	uc004fcp.2	+	12	3136	c.2657C>A	c.(2656-2658)CCA>CAA	p.P886Q	AFF2_uc004fcq.2_Missense_Mutation_p.P876Q|AFF2_uc004fcr.2_Missense_Mutation_p.P847Q|AFF2_uc011mxb.1_Missense_Mutation_p.P851Q|AFF2_uc004fcs.2_Missense_Mutation_p.P853Q|AFF2_uc011mxc.1_Missense_Mutation_p.P527Q	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	886					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					TGCATCTCACCAGCCCCACCC	0.517													10	44					1.33987e-11	1.45947e-10	0.000673444	1	0
AFF2	2334	broad.mit.edu	37	X	148044319	148044319	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:148044319A>C	uc004fcp.2	+	13	3244	c.2765A>C	c.(2764-2766)GAG>GCG	p.E922A	AFF2_uc004fcq.2_Missense_Mutation_p.E912A|AFF2_uc004fcr.2_Missense_Mutation_p.E883A|AFF2_uc011mxb.1_Missense_Mutation_p.E887A|AFF2_uc004fcs.2_Missense_Mutation_p.E889A|AFF2_uc011mxc.1_Missense_Mutation_p.E563A	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	922					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					CCACTGCCAGAGGACCCTCCA	0.443													6	6					0	0	0.000274275	0	0
CNGA2	1260	broad.mit.edu	37	X	150912208	150912208	+	Silent	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:150912208G>A	uc004fey.1	+	7	1457	c.1233G>A	c.(1231-1233)AGG>AGA	p.R411R		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	411	Extracellular (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGGTCATTAGGTGGTTTGACT	0.502													12	30					0	0	0.000219431	0	0
PNMA3	29944	broad.mit.edu	37	X	152226196	152226196	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:152226196G>A	uc004fhc.2	+	2	1120	c.784G>A	c.(784-786)GAG>AAG	p.E262K	PNMA5_uc004fha.3_5'Flank|PNMA3_uc004fhd.2_5'Flank	NM_013364	NP_037496	Q9UL41	PNMA3_HUMAN	paraneoplastic cancer-testis-brain antigen	262					apoptosis	nucleolus	nucleic acid binding|zinc ion binding			skin(2)|large_intestine(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					ggaggcaggagagaaagtatc	0													32	93					0	0	0.000339439	0	0
HCFC1	3054	broad.mit.edu	37	X	153216346	153216347	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chrX:153216346_153216347CG>AT	uc004fjp.2	-	23	6148_6149	c.5620_5621CG>AT	c.(5620-5622)CGG>ATG	p.R1874M		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	1874					cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GAAGGGCCCCCGGCCACAGGCA	0.554													6	215					0	0	6.4e-05	0	0
MCOLN2	255231	broad.mit.edu	37	1	85422148	85422149	+	Frame_Shift_Ins	INS	-	T	T			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr1:85422148_85422149insT	uc001dkm.2	-	4	771_772	c.530_531insA	c.(529-531)AATfs	p.N177fs	MCOLN2_uc001dkn.2_RNA	NM_153259	NP_694991	Q8IZK6	MCLN2_HUMAN	mucolipin 2	177						integral to membrane	ion channel activity			ovary(3)|upper_aerodigestive_tract(1)	4				all cancers(265;0.0111)|Epithelial(280;0.0263)|OV - Ovarian serous cystadenocarcinoma(397;0.217)		TCAGTGTCTCATTAGAAGGAAA	0.406													10	57	---	---	---	---					
ITIH5	80760	broad.mit.edu	37	10	7618686	7618686	+	Frame_Shift_Del	DEL	T	-	-	rs2275069	byFrequency	TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr10:7618686delT	uc001ijq.2	-	10	1787	c.1708delA	c.(1708-1710)ACCfs	p.T570fs	ITIH5_uc001ijp.2_Frame_Shift_Del_p.T356fs|ITIH5_uc001ijr.1_Frame_Shift_Del_p.T570fs	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	570					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						ATGTGGTTGGTGTCCCCCTCT	0.587													10	38	---	---	---	---					
ANKRD36	375248	broad.mit.edu	37	2	97875580	97875580	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr2:97875580delA	uc010yva.1	+	56	3582	c.3338delA	c.(3337-3339)GAAfs	p.E1113fs		NM_001164315	NP_001157787	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36	1113											0						ATAGCCAGAGAAAAAAAGGAT	0.318													2	4	---	---	---	---					
EBF4	57593	broad.mit.edu	37	20	2686263	2686263	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr20:2686263delC	uc002wgt.3	+	3	434	c.166delC	c.(166-168)CCCfs	p.P56fs	EBF4_uc002wgs.3_RNA	NM_001110514	NP_001103984	Q9BQW3	COE4_HUMAN	early B-cell factor 4	60					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding				0						GAAGCAGCCTCCCTCCAACCT	0.587													2	4	---	---	---	---					
STX1A	6804	broad.mit.edu	37	7	73123425	73123427	+	In_Frame_Del	DEL	CAT	-	-			TCGA-D3-A2JD-06A-11D-A19A-08	TCGA-D3-A2JD-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f5a4b392-e2d8-4304-b7ef-54b63abe42de	4ac68b56-9d2b-4a8d-a1c0-212cb1ee2f47	g.chr7:73123425_73123427delCAT	uc003tyx.2	-	2	83_85	c.56_58delATG	c.(55-60)GATGTC>GTC	p.D19del	STX1A_uc003tyy.2_In_Frame_Del_p.D19del|STX1A_uc010lbj.1_In_Frame_Del_p.D19del|hsa-mir-4284|MI0015893_5'Flank	NM_004603	NP_004594	Q16623	STX1A_HUMAN	syntaxin 1A isoform 1	19	Cytoplasmic (Potential).				energy reserve metabolic process|glutamate secretion|intracellular protein transport|regulation of insulin secretion	cell junction|extracellular region|integral to membrane|neuron projection|synaptic vesicle membrane|synaptosome	SNAP receptor activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				GTGACAGCGACATCATCATCATC	0.586													8	218	---	---	---	---					
