Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
HES2	54626	broad.mit.edu	37	1	6479858	6479858	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:6479858C>T	uc001amx.2	-	1	122	c.23G>A	c.(22-24)GGG>GAG	p.G8E	HES2_uc001amw.2_Missense_Mutation_p.G8E	NM_019089	NP_061962	Q9Y543	HES2_HUMAN	hairy and enhancer of split homolog 2	8					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	Ovarian(185;0.0634)|all_lung(157;0.154)	all_cancers(23;1.05e-30)|all_epithelial(116;1.37e-17)|all_hematologic(16;1.81e-05)|all_lung(118;2.27e-05)|Acute lymphoblastic leukemia(12;4.98e-05)|Lung NSC(185;9.97e-05)|Colorectal(325;0.0002)|all_neural(13;0.000531)|Renal(390;0.00188)|Breast(487;0.00475)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;1.02e-35)|GBM - Glioblastoma multiforme(13;1.75e-28)|Colorectal(212;6.1e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000888)|BRCA - Breast invasive adenocarcinoma(365;0.00106)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		CGCCGCGTCCCCTGCCCGGCG	0.751													3	6					0	0	0.000602214	0	0
KIF1B	23095	broad.mit.edu	37	1	10399869	10399869	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:10399869C>T	uc001aqx.3	+	32	3667	c.3465C>T	c.(3463-3465)CTC>CTT	p.L1155L	KIF1B_uc001aqw.3_Silent_p.L1109L|KIF1B_uc001aqy.2_Silent_p.L1129L|KIF1B_uc001aqz.2_Silent_p.L1155L|KIF1B_uc001ara.2_Silent_p.L1115L|KIF1B_uc001arb.2_Silent_p.L1141L	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	1155					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		CGGAGCCCCTCAAAAACAATG	0.403													9	28					0	0	0.000673444	0	0
PGD	5226	broad.mit.edu	37	1	10471493	10471493	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:10471493G>A	uc001arc.2	+	7	628	c.538G>A	c.(538-540)GGC>AGC	p.G180S	PGD_uc001ard.2_Missense_Mutation_p.G100S|PGD_uc010oak.1_Missense_Mutation_p.G158S|PGD_uc010oal.1_Missense_Mutation_p.G167S	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	180					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		TGAGGGAGCAGGCCACTTCGT	0.537													6	23					0	0	8.12818e-05	0	0
VPS13D	55187	broad.mit.edu	37	1	12359375	12359375	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:12359375G>A	uc001atv.2	+	25	6291	c.6150G>A	c.(6148-6150)GGG>GGA	p.G2050G	VPS13D_uc001atw.2_Silent_p.G2050G|VPS13D_uc001atx.2_Silent_p.G1238G	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	2050					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CAAATTTGGGGAAGTTGAAAG	0.428													31	58					0	0	0.000491102	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12835082	12835082	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:12835082C>T	uc001aui.2	+	1	99	c.72C>T	c.(70-72)GCC>GCT	p.A24A		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	24										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GGGCCTTGGCCATCCCCACCC	0.577													28	49					0	0	0.000147802	0	0
FBXO42	54455	broad.mit.edu	37	1	16577664	16577664	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:16577664G>A	uc001ayg.2	-	10	1871	c.1655C>T	c.(1654-1656)TCC>TTC	p.S552F	FBXO42_uc001aye.3_Missense_Mutation_p.S270F|FBXO42_uc001ayf.2_Missense_Mutation_p.S459F	NM_018994	NP_061867	Q6P3S6	FBX42_HUMAN	F-box protein 42	552										upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0193)|Colorectal(212;3.16e-07)|COAD - Colon adenocarcinoma(227;1.46e-05)|BRCA - Breast invasive adenocarcinoma(304;4.37e-05)|Kidney(64;0.000246)|KIRC - Kidney renal clear cell carcinoma(64;0.00336)|STAD - Stomach adenocarcinoma(313;0.0139)|READ - Rectum adenocarcinoma(331;0.0693)		GGCACCTGGGGAGACGGCCCC	0.592													11	48					0	0	6.40141e-05	0	0
MST1P2	11209	broad.mit.edu	37	1	16976354	16976354	+	RNA	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:16976354C>T	uc010och.1	+	13		c.2199C>T			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						ATGTCATCTCCAACCAGGAGT	0.572													9	67					0	0	0.000175454	0	0
PAX7	5081	broad.mit.edu	37	1	18958101	18958101	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:18958101G>A	uc001bay.2	+	1	602	c.4G>A	c.(4-6)GCG>ACG	p.A2T	PAX7_uc001baz.2_Missense_Mutation_p.A2T|PAX7_uc010oct.1_Missense_Mutation_p.A2T	NM_002584	NP_002575	P23759	PAX7_HUMAN	paired box 7 isoform 1	2					anti-apoptosis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX7/FOXO1(197)	soft_tissue(197)|lung(3)|prostate(1)|ovary(1)|breast(1)	203		Colorectal(325;3.46e-05)|all_lung(284;0.000439)|Renal(390;0.000518)|Lung NSC(340;0.000543)|Breast(348;0.00093)|Ovarian(437;0.00768)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00609)|BRCA - Breast invasive adenocarcinoma(304;4.71e-05)|Kidney(64;0.000279)|KIRC - Kidney renal clear cell carcinoma(64;0.00371)|STAD - Stomach adenocarcinoma(196;0.00658)|READ - Rectum adenocarcinoma(331;0.0576)		CGCAAGAATGGCGGCCCTTCC	0.622			T	FOXO1A	alveolar rhabdomyosarcoma								9	17					0	0	0.000673444	0	0
UBR4	23352	broad.mit.edu	37	1	19407947	19407947	+	Silent	SNP	A	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:19407947A>T	uc001bbi.2	-	103	15133	c.15129T>A	c.(15127-15129)CTT>CTA	p.L5043L	UBR4_uc001bbf.2_5'UTR|UBR4_uc010ocv.1_Silent_p.L566L|UBR4_uc009vph.2_Silent_p.L677L|UBR4_uc010ocw.1_Silent_p.L707L|UBR4_uc001bbg.2_Silent_p.L754L|UBR4_uc001bbh.2_Silent_p.L752L	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	5043					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		GCAGGATGTGAAGGGCCAAGA	0.582													35	175					0	0	0.000814825	0	0
MAN1C1	57134	broad.mit.edu	37	1	26107603	26107603	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:26107603G>A	uc001bkm.2	+	10	1980	c.1650G>A	c.(1648-1650)CTG>CTA	p.L550L	MAN1C1_uc009vry.1_Silent_p.L370L|MAN1C1_uc001bkn.2_Silent_p.L21L	NM_020379	NP_065112	Q9NR34	MA1C1_HUMAN	mannosidase, alpha, class 1C, member 1	550	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(1)	1		Colorectal(325;3.78e-05)|Lung NSC(340;0.000181)|all_lung(284;0.000245)|Renal(390;0.000714)|Ovarian(437;0.00159)|Breast(348;0.0156)|Myeloproliferative disorder(586;0.0257)|all_neural(195;0.0515)|Esophageal squamous(538;0.232)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0574)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.15e-07)|COAD - Colon adenocarcinoma(152;4.31e-06)|STAD - Stomach adenocarcinoma(196;0.00125)|BRCA - Breast invasive adenocarcinoma(304;0.00141)|KIRC - Kidney renal clear cell carcinoma(1967;0.00146)|GBM - Glioblastoma multiforme(114;0.0149)|READ - Rectum adenocarcinoma(331;0.0803)		AGGTGGTGCTGGTGAGTGGGC	0.622													10	43					0	0	0.00010058	0	0
PTAFR	5724	broad.mit.edu	37	1	28477168	28477168	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:28477168G>A	uc001bpl.2	-	2	492	c.365C>T	c.(364-366)CCC>CTC	p.P122L	PTAFR_uc001bpm.3_Missense_Mutation_p.P122L|PTAFR_uc009vte.2_Missense_Mutation_p.P122L	NM_000952	NP_000943	P25105	PTAFR_HUMAN	platelet-activating factor receptor	122	Cytoplasmic (Potential).				chemotaxis|inflammatory response|interferon-gamma-mediated signaling pathway|phosphatidylinositol-mediated signaling	integral to plasma membrane|nucleus	phospholipid binding|platelet activating factor receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00715)|all_lung(284;0.00732)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.215)|OV - Ovarian serous cystadenocarcinoma(117;6e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|STAD - Stomach adenocarcinoma(196;0.00678)|READ - Rectum adenocarcinoma(331;0.0649)		AGTCTTGATGGGCCGAGTTAC	0.557													23	78					0	0	0.000295444	0	0
YTHDF2	51441	broad.mit.edu	37	1	29070135	29070135	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:29070135G>A	uc001brc.2	+	4	1850	c.1353G>A	c.(1351-1353)GGG>GGA	p.G451G	YTHDF2_uc001brd.2_Silent_p.G448G|YTHDF2_uc010ofx.1_Silent_p.G401G|YTHDF2_uc001bre.2_Silent_p.G401G	NM_016258	NP_057342	Q9Y5A9	YTHD2_HUMAN	high glucose-regulated protein 8	451	YTH.				humoral immune response					ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;0.000601)|all_lung(284;0.000771)|Breast(348;0.00502)|Renal(390;0.00758)|all_neural(195;0.0227)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;8.36e-08)|COAD - Colon adenocarcinoma(152;5.46e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0221)|KIRC - Kidney renal clear cell carcinoma(1967;0.0296)|READ - Rectum adenocarcinoma(331;0.0649)		CCATGAACGGGAAAGGCCCCG	0.468													7	45					0	0	8.12818e-05	0	0
SDC3	9672	broad.mit.edu	37	1	31351554	31351554	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:31351554G>C	uc001bse.2	-	2	219	c.172C>G	c.(172-174)CCC>GCC	p.P58A	SDC3_uc001bsd.2_5'UTR	NM_014654	NP_055469	O75056	SDC3_HUMAN	syndecan 3	58	Extracellular (Potential).					integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(586;0.0393)|Colorectal(325;0.0466)|all_neural(195;0.0966)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)		STAD - Stomach adenocarcinoma(196;0.0197)|READ - Rectum adenocarcinoma(331;0.0649)		AGGTCCACGGGTCTCTCGAAG	0.637													13	78					0	0	0.000308642	0	0
BAI2	576	broad.mit.edu	37	1	32222312	32222312	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:32222312G>A	uc001btn.2	-	4	480	c.126C>T	c.(124-126)GCC>GCT	p.A42A	BAI2_uc010ogp.1_Silent_p.A30A|BAI2_uc010ogq.1_Silent_p.A42A|BAI2_uc001bto.2_Silent_p.A42A|BAI2_uc001btq.1_Silent_p.A30A|BAI2_uc010ogr.1_Silent_p.A30A	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	42	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		CCGAGGCCAGGGCAGAGCAGG	0.657													3	16					0	0	0.00024832	0	0
S100PBP	64766	broad.mit.edu	37	1	33291899	33291899	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:33291899C>T	uc001bvz.2	+	3	476	c.199C>T	c.(199-201)CCA>TCA	p.P67S	S100PBP_uc001bwa.1_Missense_Mutation_p.P67S|S100PBP_uc001bwb.1_Missense_Mutation_p.P67S|S100PBP_uc001bwc.2_Missense_Mutation_p.P67S|S100PBP_uc001bwd.2_RNA	NM_022753	NP_073590	Q96BU1	S1PBP_HUMAN	S100P binding protein isoform a	67						nucleus	calcium-dependent protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				GGAAGATGACCCATCATATGA	0.448													13	63					0	0	0.000219431	0	0
EIF2C1	26523	broad.mit.edu	37	1	36354143	36354143	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:36354143C>T	uc001bzl.2	+	2	354	c.141C>T	c.(139-141)ATC>ATT	p.I47I	EIF2C1_uc001bzk.2_5'UTR	NM_012199	NP_036331	Q9UL18	AGO1_HUMAN	eukaryotic translation initiation factor 2C, 1	47					negative regulation of translation involved in gene silencing by miRNA|nuclear-transcribed mRNA catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|polysome	protein binding|RNA binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AGGTGGACATCCCTAAGATCG	0.562													15	69					0	0	0.000308642	0	0
DMBX1	127343	broad.mit.edu	37	1	46977876	46977876	+	Missense_Mutation	SNP	G	A	A	rs142474862		TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:46977876G>A	uc001cpx.2	+	4	874	c.859G>A	c.(859-861)GAA>AAA	p.E287K	DMBX1_uc001cpw.2_Missense_Mutation_p.E282K	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	287					brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CTCGTCCTTCGAAGTAGGGGG	0.652													12	35					0	0	6.40141e-05	0	0
BCAR3	8412	broad.mit.edu	37	1	94054934	94054934	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:94054934G>A	uc001dpz.2	-	5	804	c.529C>T	c.(529-531)CGT>TGT	p.R177C	BCAR3_uc001dqa.2_Missense_Mutation_p.R177C|BCAR3_uc001dqb.2_Missense_Mutation_p.R177C|BCAR3_uc001dpy.2_Missense_Mutation_p.R86C|uc009wdn.2_5'Flank	NM_003567	NP_003558	O75815	BCAR3_HUMAN	breast cancer antiestrogen resistance 3	177	SH2.				response to drug|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3		all_lung(203;0.00145)|Lung NSC(277;0.00662)		all cancers(265;0.0126)|GBM - Glioblastoma multiforme(16;0.0467)|Epithelial(280;0.166)		AGAGAGTCACGAACTAGGAAG	0.488													13	17					0	0	0.00074312	0	0
COL11A1	1301	broad.mit.edu	37	1	103544216	103544216	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:103544216C>T	uc001dul.2	-	3	804	c.486G>A	c.(484-486)GGG>GGA	p.G162G	COL11A1_uc001dum.2_Silent_p.G162G|COL11A1_uc001dun.2_Silent_p.G162G|COL11A1_uc009weh.2_Silent_p.G162G	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	162	TSP N-terminal.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TTACTTACTTCCCGTCAGCGA	0.299													18	22					0	0	0.00074312	0	0
SORT1	6272	broad.mit.edu	37	1	109884743	109884744	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:109884743_109884744CC>AA	uc001dxm.1	-	9	1049_1050	c.1000_1001GG>TT	c.(1000-1002)GGG>TTG	p.G334L	SORT1_uc010ovi.1_Missense_Mutation_p.G197L	NM_002959	NP_002950	Q99523	SORT_HUMAN	sortilin 1 preproprotein	334	BNR 5.|Extracellular (Potential).				endocytosis|endosome to lysosome transport|endosome transport via multivesicular body sorting pathway|glucose import|Golgi to endosome transport|induction of apoptosis by extracellular signals|myotube differentiation|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|neuropeptide signaling pathway|ossification|plasma membrane to endosome transport|regulation of gene expression|response to insulin stimulus|vesicle organization	cell surface|coated pit|early endosome|endoplasmic reticulum membrane|endosome membrane|Golgi cisterna membrane|integral to membrane|lysosomal membrane|microsome|nuclear membrane|perinuclear region of cytoplasm|plasma membrane	enzyme binding|nerve growth factor binding|nerve growth factor receptor activity|neurotensin receptor activity, non-G-protein coupled			ovary(1)	1		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0529)|Colorectal(144;0.142)|Epithelial(280;0.145)|Kidney(133;0.169)|all cancers(265;0.184)		CCATGTGTCCCCTTGATCTGTT	0.446													13	584					0	0	6.4e-05	0	0
AMPD2	271	broad.mit.edu	37	1	110167965	110167965	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:110167965C>T	uc009wfh.1	+	3	836	c.294C>T	c.(292-294)GCC>GCT	p.A98A	AMPD2_uc009wfg.1_RNA|AMPD2_uc001dyb.1_Silent_p.A17A|AMPD2_uc001dyc.1_Silent_p.A98A|AMPD2_uc010ovr.1_Intron|AMPD2_uc010ovs.1_5'UTR|AMPD2_uc001dyd.1_5'Flank	NM_004037	NP_004028	Q01433	AMPD2_HUMAN	adenosine monophosphate deaminase 2 (isoform L)	98					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|breast(1)	3		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0425)|all cancers(265;0.0884)|Colorectal(144;0.109)|Epithelial(280;0.111)|LUSC - Lung squamous cell carcinoma(189;0.228)		TGCAGTCTGCCCGATCCCTGC	0.672													17	24					0	0	0.000422831	0	0
KCNA10	3744	broad.mit.edu	37	1	111060909	111060909	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:111060909G>A	uc001dzt.1	-	1	889	c.501C>T	c.(499-501)TCC>TCT	p.S167S		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	167						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		GCTCATAGAAGGAGATTTCAT	0.488													20	40					0	0	0.000132079	0	0
ADAM30	11085	broad.mit.edu	37	1	120438457	120438458	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:120438457_120438458CC>AA	uc001eij.2	-	1	656_657	c.502_503GG>TT	c.(502-504)GGG>TTG	p.G168L		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	168					proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		AACCTGATTCCCAAACTGCTCT	0.436													12	536					0	0	6.4e-05	0	0
PPIAL4G	644591	broad.mit.edu	37	1	143767503	143767503	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:143767503T>G	uc001ejt.2	-	1	379	c.346A>C	c.(346-348)ACT>CCT	p.T116P		NM_001123068	NP_001116540	A2BFH1	PAL4G_HUMAN	peptidylprolyl isomerase A (cyclophilin A)-like	116	PPIase cyclophilin-type.				protein folding	cytoplasm	peptidyl-prolyl cis-trans isomerase activity				0						GTCTTGGCAGTGCAGATGAAA	0.473													53	380					0	0	0.000781405	0	0
ACP6	51205	broad.mit.edu	37	1	147131150	147131150	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:147131150G>A	uc001epr.2	-	4	948	c.484C>T	c.(484-486)CGT>TGT	p.R162C	ACP6_uc009wjj.1_Missense_Mutation_p.R119C	NM_016361	NP_057445	Q9NPH0	PPA6_HUMAN	acid phosphatase 6, lysophosphatidic precursor	162					lipid metabolic process	extracellular region|mitochondrion	acid phosphatase activity|protein binding			ovary(4)	4	all_hematologic(923;0.0276)					TTAGTGGAACGAATACTGAAA	0.398													33	52					0	0	0.000409698	0	0
GJA8	2703	broad.mit.edu	37	1	147380211	147380211	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:147380211C>T	uc001epu.1	+	2	192	c.129C>T	c.(127-129)TTC>TTT	p.F43F		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	43	Helical; (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					CCGCAGAGTTCGTGTGGGGGG	0.592													8	58					0	0	0.000157383	0	0
RPTN	126638	broad.mit.edu	37	1	152128013	152128013	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:152128013A>G	uc001ezs.1	-	3	1627	c.1562T>C	c.(1561-1563)TTC>TCC	p.F521S		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	521	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						ACCATAGTGGAAACTCTGGCC	0.507													7	801					0	0	0.000958276	0	0
RPTN	126638	broad.mit.edu	37	1	152128515	152128515	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:152128515G>A	uc001ezs.1	-	3	1125	c.1060C>T	c.(1060-1062)CAT>TAT	p.H354Y		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	354	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TGATCATAATGATAACACTGG	0.488													244	432					0	0	0.000781405	0	0
FLG2	388698	broad.mit.edu	37	1	152326064	152326064	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:152326064C>T	uc001ezw.3	-	3	4271	c.4198G>A	c.(4198-4200)GGA>AGA	p.G1400R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1400							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGGCCATGTCCAGTGGCCTCT	0.507													91	128					0	0	0.000781405	0	0
LCE1F	353137	broad.mit.edu	37	1	152748928	152748928	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:152748928G>A	uc010pdv.1	+	1	81	c.81G>A	c.(79-81)CCG>CCA	p.P27P		NM_178354	NP_848131	Q5T754	LCE1F_HUMAN	late cornified envelope 1F	27	Pro-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			gccccacaccgaagtgccccc	0.393													16	35					0	0	0.000566183	0	0
NUP210L	91181	broad.mit.edu	37	1	154061998	154061998	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:154061998G>A	uc001fdw.2	-	16	2332	c.2260C>T	c.(2260-2262)CGC>TGC	p.R754C	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Missense_Mutation_p.R754C	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	754						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			CAAATGAAGCGAACCTGCAAA	0.498													47	89					0	0	0.000781405	0	0
PBXIP1	57326	broad.mit.edu	37	1	154923959	154923959	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:154923959C>A	uc001ffr.2	-	4	290	c.231G>T	c.(229-231)GAG>GAT	p.E77D	PBXIP1_uc001ffs.2_Missense_Mutation_p.E48D|PBXIP1_uc010pep.1_Intron|PBXIP1_uc009woy.1_RNA	NM_020524	NP_065385	Q96AQ6	PBIP1_HUMAN	pre-B-cell leukemia homeobox interacting protein	77					cell differentiation|multicellular organismal development|negative regulation of transcription, DNA-dependent	cytosol|microtubule|nucleus	protein binding|transcription corepressor activity			large_intestine(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TGACCTCAGTCTCCTCTGTTA	0.567													28	64					6.05902e-23	6.84747e-22	0.000692331	1	0
DCST1	149095	broad.mit.edu	37	1	155023108	155023108	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:155023108G>A	uc001fgn.1	+	17	1981	c.1885G>A	c.(1885-1887)GAT>AAT	p.D629N	DCST1_uc010pes.1_Missense_Mutation_p.D604N|uc001fgo.2_RNA|ADAM15_uc001fgq.1_5'Flank|ADAM15_uc009wpc.1_5'Flank|ADAM15_uc010pet.1_5'Flank|ADAM15_uc010peu.1_5'Flank|ADAM15_uc001fgt.1_5'Flank|ADAM15_uc010pev.1_5'Flank|ADAM15_uc001fgs.1_5'Flank|ADAM15_uc001fgr.1_5'Flank|ADAM15_uc001fgu.1_5'Flank|ADAM15_uc001fgw.1_5'Flank|ADAM15_uc001fgv.1_5'Flank|ADAM15_uc001fgx.1_5'Flank|ADAM15_uc001fgz.1_5'Flank|ADAM15_uc001fgy.1_5'Flank|ADAM15_uc001fha.1_5'Flank	NM_152494	NP_689707	Q5T197	DCST1_HUMAN	DC-STAMP domain containing 1 isoform 1	629	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)|skin(1)	2	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			CCCGCTGGCGGATATCCTGCA	0.706											OREG0013846	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	5					0	0	0.00024832	0	0
RHBG	57127	broad.mit.edu	37	1	156351238	156351238	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:156351238G>A	uc010pho.1	+	5	812	c.774G>A	c.(772-774)CTG>CTA	p.L258L	RHBG_uc010phm.1_Silent_p.L96L|RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_Silent_p.L189L|RHBG_uc009wrz.2_Silent_p.L226L|RHBG_uc001for.2_Silent_p.L228L	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	258	Helical; (Potential).				transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					ACTACTCCCTGGCTGCCAGCA	0.592													28	42					0	0	0.000279167	0	0
OR10R2	343406	broad.mit.edu	37	1	158450091	158450091	+	Missense_Mutation	SNP	C	T	T	rs138574952		TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:158450091C>T	uc010pik.1	+	1	424	c.424C>T	c.(424-426)CGC>TGC	p.R142C	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	142	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R142C(1)		pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					GGGTTATGATCGCTATGCTGC	0.498													42	191					0	0	0.000781405	0	0
OR10J1	26476	broad.mit.edu	37	1	159409628	159409628	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:159409628G>A	uc010piv.1	+	1	80	c.80G>A	c.(79-81)GGT>GAT	p.G27D	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	27	Extracellular (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					GTTTTCCAAGGTTTCTCTAGC	0.398													19	129					0	0	0.000375601	0	0
SLAMF6	114836	broad.mit.edu	37	1	160466015	160466015	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:160466015G>A	uc001fwe.1	-	2	278	c.218C>T	c.(217-219)CCA>CTA	p.P73L	SLAMF6_uc001fwd.1_Missense_Mutation_p.P73L|SLAMF6_uc010pjh.1_Missense_Mutation_p.P24L|SLAMF6_uc010pji.1_Intron|SLAMF6_uc010pjj.1_Intron|SLAMF6_uc009wtm.1_Missense_Mutation_p.P24L	NM_052931	NP_443163	Q96DU3	SLAF6_HUMAN	activating NK receptor precursor	73	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	all_cancers(52;1.05e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0923)			GTGGATTTCTGGACTTTTGGT	0.478													23	116					0	0	0.000375601	0	0
F11R	50848	broad.mit.edu	37	1	160970879	160970879	+	Missense_Mutation	SNP	G	A	A	rs149683377		TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:160970879G>A	uc009wtt.2	-	3	442	c.172C>T	c.(172-174)CCC>TCC	p.P58S	F11R_uc010pjv.1_Missense_Mutation_p.P58S|F11R_uc001fxe.3_Missense_Mutation_p.P58S|F11R_uc009wtu.2_Missense_Mutation_p.P58S|F11R_uc010pjw.1_Missense_Mutation_p.P62S|F11R_uc001fxf.3_Missense_Mutation_p.P58S	NM_016946	NP_058642	Q9Y624	JAM1_HUMAN	F11 receptor precursor	58	Extracellular (Potential).|Ig-like V-type 1.				blood coagulation|inflammatory response|interspecies interaction between organisms|leukocyte migration|tight junction assembly	integral to membrane|tight junction				ovary(2)	2	all_cancers(52;6.73e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00207)			TCCACACGGGGAGAAGAAAAG	0.502													12	33					0	0	0.000308642	0	0
ILDR2	387597	broad.mit.edu	37	1	166908769	166908769	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:166908769C>A	uc001gdx.1	-	4	594	c.538G>T	c.(538-540)GCT>TCT	p.A180S		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	180	Extracellular (Potential).					integral to membrane				ovary(1)	1						ATCTCCACAGCAAAACTGGGC	0.423													22	48					3.10358e-05	0.000346305	0.000295444	1	0
C1orf112	55732	broad.mit.edu	37	1	169798453	169798453	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:169798453G>T	uc001ggp.2	+	14	1487	c.1177G>T	c.(1177-1179)GAA>TAA	p.E393*	C1orf112_uc001ggj.2_RNA|C1orf112_uc001ggq.2_Nonsense_Mutation_p.E393*|C1orf112_uc009wvt.2_Nonsense_Mutation_p.E70*|C1orf112_uc010plu.1_Silent_p.V320V|C1orf112_uc009wvu.1_Nonsense_Mutation_p.E269*|C1orf112_uc001ggr.2_Nonsense_Mutation_p.E258*|C1orf112_uc010plv.1_Nonsense_Mutation_p.E335*	NM_018186	NP_060656	Q9NSG2	CA112_HUMAN	hypothetical protein LOC55732	393											0	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GTGTTCTGGTGAACTCTCTCT	0.393													9	54					3.86212e-05	0.000430037	0.000673444	1	0
DARS2	55157	broad.mit.edu	37	1	173808592	173808592	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:173808592G>A	uc001gjh.1	+	10	1338	c.928G>A	c.(928-930)GAT>AAT	p.D310N		NM_018122	NP_060592	Q6PI48	SYDM_HUMAN	aspartyl-tRNA synthetase 2, mitochondrial	310					tRNA aminoacylation for protein translation	mitochondrial matrix|nucleus	aspartate-tRNA ligase activity|ATP binding|nucleic acid binding			central_nervous_system(2)	2					L-Aspartic Acid(DB00128)	CAATGACAAAGATCCTGTGGT	0.433													28	52					0	0	0.000878237	0	0
PAPPA2	60676	broad.mit.edu	37	1	176762728	176762728	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:176762728C>T	uc001gkz.2	+	20	6217	c.5053C>T	c.(5053-5055)CCC>TCC	p.P1685S	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1685	Sushi 5.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGTAATCCCCCCCAGTGACCC	0.473													34	66					0	0	0.00058488	0	0
CACNA1E	777	broad.mit.edu	37	1	181705482	181705482	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:181705482G>A	uc001gow.2	+	22	3499	c.3334G>A	c.(3334-3336)GAG>AAG	p.E1112K	CACNA1E_uc009wxs.2_Missense_Mutation_p.E1000K|CACNA1E_uc001gox.1_Missense_Mutation_p.E338K|CACNA1E_uc009wxt.2_Missense_Mutation_p.E338K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1112	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ggaggaggtggagaagaagaa	0.413													3	7					0	0	6.4e-05	0	0
CRB1	23418	broad.mit.edu	37	1	197390634	197390634	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:197390634C>T	uc001gtz.2	+	6	1811	c.1676C>T	c.(1675-1677)TCC>TTC	p.S559F	CRB1_uc010poz.1_Missense_Mutation_p.S490F|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.S447F|CRB1_uc010ppb.1_Missense_Mutation_p.S559F|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.S40F|CRB1_uc001gub.1_Missense_Mutation_p.S208F	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	559	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CTGTTCATTTCCCACAACACC	0.458													61	74					0	0	0.000781405	0	0
CR1	1378	broad.mit.edu	37	1	207803915	207803915	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:207803915G>A	uc001hfy.2	+	38	6196	c.6056G>A	c.(6055-6057)GGA>GAA	p.G2019E	CR1_uc001hfx.2_Missense_Mutation_p.G2469E	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	2019	Cytoplasmic (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						CATTCTCAAGGAGGCAGCAGC	0.343													15	15					0	0	0.000566183	0	0
HSD11B1	3290	broad.mit.edu	37	1	209880056	209880056	+	Silent	SNP	G	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:209880056G>C	uc001hhj.2	+	4	329	c.222G>C	c.(220-222)GTG>GTC	p.V74V	HSD11B1_uc001hhk.2_Silent_p.V74V	NM_181755	NP_861420	P28845	DHI1_HUMAN	11-beta-hydroxysteroid dehydrogenase 1	74	Lumenal (Potential).				glucocorticoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	11-beta-hydroxysteroid dehydrogenase (NADP+) activity|11-beta-hydroxysteroid dehydrogenase|binding			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;1.04e-55)|Epithelial(68;1.57e-52)|all cancers(67;1.83e-46)|Colorectal(1306;0.115)	NADH(DB00157)	CACTGCAGGTGGTATCCCACT	0.512													4	196					0	0	0.000602214	0	0
PPP2R5A	5525	broad.mit.edu	37	1	212502539	212502539	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:212502539T>C	uc001hjb.2	+	2	818	c.244T>C	c.(244-246)TTT>CTT	p.F82L	PPP2R5A_uc010ptd.1_Missense_Mutation_p.F23L	NM_006243	NP_006234	Q15172	2A5A_HUMAN	protein phosphatase 2, regulatory subunit B	82					negative regulation of establishment of protein localization in plasma membrane|negative regulation of lipid kinase activity|positive regulation of protein dephosphorylation|signal transduction	chromosome, centromeric region|cytoplasm|nucleus|protein phosphatase type 2A complex	kinase binding|protein phosphatase type 2A regulator activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0125)|all cancers(67;0.029)|Epithelial(68;0.154)|GBM - Glioblastoma multiforme(131;0.155)		TTGTATACTGTTTGATTTCAT	0.328													15	32					0	0	0.000958276	0	0
OBSCN	84033	broad.mit.edu	37	1	228556587	228556587	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:228556587C>T	uc009xez.1	+	89	19976	c.19932C>T	c.(19930-19932)TCC>TCT	p.S6644S	OBSCN_uc001hsr.1_Silent_p.S1273S	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	6644	Protein kinase 1.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GCGAAGCCTCCGACATTTGGT	0.632													25	42					0	0	0.000720815	0	0
URB2	9816	broad.mit.edu	37	1	229773376	229773376	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:229773376G>A	uc001hts.1	+	4	3152	c.3016G>A	c.(3016-3018)GAG>AAG	p.E1006K	URB2_uc009xfd.1_Missense_Mutation_p.E1006K	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	1006						nucleolus				central_nervous_system(2)|ovary(1)	3						GACGTTCTTAGAGGAGCTAAT	0.458													16	40					0	0	0.000422831	0	0
TTC13	79573	broad.mit.edu	37	1	231056329	231056330	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:231056329_231056330GG>AA	uc001huf.3	-	17	1940_1941	c.1909_1910CC>TT	c.(1909-1911)CCT>TTT	p.P637F	TTC13_uc009xfi.2_Missense_Mutation_p.P584F|TTC13_uc009xfj.2_RNA|TTC13_uc001hug.3_Missense_Mutation_p.P584F|TTC13_uc009xfk.1_Missense_Mutation_p.P527F	NM_024525	NP_078801	Q8NBP0	TTC13_HUMAN	tetratricopeptide repeat domain 13 isoform a	637							binding			ovary(1)|skin(1)	2	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)		COAD - Colon adenocarcinoma(196;0.243)		CAATCCTTTAGGATTATTAGCT	0.356													49	80					0	0	6.4e-05	0	0
RYR2	6262	broad.mit.edu	37	1	237754135	237754135	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:237754135G>A	uc001hyl.1	+	31	4123	c.4003G>A	c.(4003-4005)GAA>AAA	p.E1335K		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1335	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GAATGACTTGGAAGATTATGA	0.522													10	77					0	0	0.000442599	0	0
SMYD3	64754	broad.mit.edu	37	1	246498675	246498675	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:246498675G>A	uc001ibl.2	-	3	425	c.330C>T	c.(328-330)TTC>TTT	p.F110F	SMYD3_uc001ibk.2_Silent_p.F51F	NM_022743	NP_073580	Q9H7B4	SMYD3_HUMAN	SET and MYND domain containing 3	110						cytoplasm|nucleus	histone-lysine N-methyltransferase activity|protein binding|zinc ion binding				0	all_cancers(71;0.000291)|all_epithelial(71;0.000174)|Ovarian(71;0.0377)|all_lung(81;0.0568)|Lung NSC(105;0.0804)|Breast(184;0.173)|Melanoma(84;0.242)	all_cancers(173;0.0496)|Acute lymphoblastic leukemia(190;0.164)	OV - Ovarian serous cystadenocarcinoma(106;0.0129)	all cancers(4;0.028)|GBM - Glioblastoma multiforme(49;0.0537)		TCACAAGTTTGAAGACAACTC	0.348													39	75					0	0	0.000319135	0	0
ZNF670	93474	broad.mit.edu	37	1	247201394	247201394	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:247201394T>C	uc001icd.1	-	4	698	c.527A>G	c.(526-528)AAG>AGG	p.K176R	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron	NM_033213	NP_149990	Q9BS34	ZN670_HUMAN	zinc finger protein 670	176					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00427)			ATCAAAAGGCTTCTCATACAC	0.383													21	38					0	0	0.000175454	0	0
OR2T10	127069	broad.mit.edu	37	1	248756773	248756774	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:248756773_248756774GG>AA	uc010pzn.1	-	1	296_297	c.296_297CC>TT	c.(295-297)ACC>ATT	p.T99I		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	99	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGTACATCTGGGTGCCACACCC	0.525													8	20					0	0	6.4e-05	0	0
IDI1	3422	broad.mit.edu	37	10	1087205	1087205	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr10:1087205C>T	uc001iga.2	-	5	895	c.777G>A	c.(775-777)GCG>GCA	p.A259A	C10orf110_uc010qaf.1_Intron|C10orf110_uc001ifx.3_Intron|C10orf110_uc001ifw.3_Intron|C10orf110_uc001ify.3_Intron|IDI1_uc001ifz.2_Silent_p.A203A|IDI1_uc001igb.2_RNA|IDI1_uc001igc.2_Silent_p.A203A	NM_004508	NP_004499	Q13907	IDI1_HUMAN	isopentenyl-diphosphate delta isomerase	202					carotenoid biosynthetic process|cholesterol biosynthetic process	cytosol|peroxisome	hydrolase activity|isopentenyl-diphosphate delta-isomerase activity|metal ion binding				0		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.221)	Epithelial(11;0.0972)		AGAGAAAAGTCGCTGCAATAA	0.318													25	28					0	0	0.000375601	0	0
IDI1	3422	broad.mit.edu	37	10	1087215	1087215	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr10:1087215A>G	uc001iga.2	-	5	885	c.767T>C	c.(766-768)ATT>ACT	p.I256T	C10orf110_uc010qaf.1_Intron|C10orf110_uc001ifx.3_Intron|C10orf110_uc001ifw.3_Intron|C10orf110_uc001ify.3_Intron|IDI1_uc001ifz.2_Missense_Mutation_p.I200T|IDI1_uc001igb.2_RNA|IDI1_uc001igc.2_Missense_Mutation_p.I200T	NM_004508	NP_004499	Q13907	IDI1_HUMAN	isopentenyl-diphosphate delta isomerase	199	Nudix hydrolase.				carotenoid biosynthetic process|cholesterol biosynthetic process	cytosol|peroxisome	hydrolase activity|isopentenyl-diphosphate delta-isomerase activity|metal ion binding				0		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.221)	Epithelial(11;0.0972)		CGCTGCAATAATTTTAAACCA	0.313													27	30					0	0	0.000586117	0	0
UPF2	26019	broad.mit.edu	37	10	12071318	12071319	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr10:12071318_12071319GG>TT	uc001ila.2	-	2	1044_1045	c.570_571CC>AA	c.(568-573)TCCCAT>TCAAAT	p.H191N	UPF2_uc001ilb.2_Missense_Mutation_p.H191N|UPF2_uc001ilc.2_Missense_Mutation_p.H191N|UPF2_uc009xiz.1_Missense_Mutation_p.H191N	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	191	MIF4G 1.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				TTAAAATCATGGGACAAGGAGT	0.381													11	701					0	0	6.4e-05	0	0
CDC123	8872	broad.mit.edu	37	10	12257793	12257794	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr10:12257793_12257794GG>TT	uc001ill.2	+	5	576_577	c.292_293GG>TT	c.(292-294)GGG>TTG	p.G98L	CDC123_uc009xja.2_Missense_Mutation_p.G98L|CDC123_uc001ilm.2_Missense_Mutation_p.G98L	NM_006023	NP_006014	O75794	CD123_HUMAN	cell division cycle 123	98					cell cycle arrest|cell division|positive regulation of cell proliferation|regulation of mitotic cell cycle	cytoplasm				central_nervous_system(1)	1						CAATTCCCTCGGGGGCAGTGTC	0.416													7	333					0	0	6.4e-05	0	0
ITGA8	8516	broad.mit.edu	37	10	15573141	15573141	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr10:15573141C>T	uc001ioc.1	-	28	2890	c.2890G>A	c.(2890-2892)GAT>AAT	p.D964N	ITGA8_uc010qcb.1_Missense_Mutation_p.D949N	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	964	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GCATAGGGATCATTTTTTCTC	0.328													23	27					0	0	0.000720815	0	0
GDF2	2658	broad.mit.edu	37	10	48413970	48413970	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr10:48413970G>C	uc001jfa.1	-	2	1061	c.898C>G	c.(898-900)CAC>GAC	p.H300D		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	300					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						TCCTCCTCGTGACTGCTCTCA	0.622													26	30					0	0	0.000878237	0	0
GDF10	2662	broad.mit.edu	37	10	48429199	48429199	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr10:48429199C>T	uc001jfb.2	-	2	1143	c.687G>A	c.(685-687)GAG>GAA	p.E229E	GDF10_uc009xnp.2_Silent_p.E228E|GDF10_uc009xnq.1_Silent_p.E229E	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	229					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						CCGGGTCCCTCTCCTCAGAAT	0.687													6	7					0	0	3.59834e-05	0	0
NCOA4	8031	broad.mit.edu	37	10	51584898	51584898	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr10:51584898C>T	uc001jis.3	+	8	1200	c.997C>T	c.(997-999)CAG>TAG	p.Q333*	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron|NCOA4_uc009xon.2_Nonsense_Mutation_p.Q349*|NCOA4_uc010qhd.1_Nonsense_Mutation_p.Q349*|NCOA4_uc010qhe.1_Nonsense_Mutation_p.Q233*|NCOA4_uc010qhf.1_Nonsense_Mutation_p.Q167*|NCOA4_uc001jit.2_Nonsense_Mutation_p.Q333*|NCOA4_uc009xoo.2_Nonsense_Mutation_p.Q333*	NM_001145263	NP_001138735	Q13772	NCOA4_HUMAN	nuclear receptor coactivator 4 isoform 3	333					androgen receptor signaling pathway|male gonad development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	androgen receptor binding|transcription coactivator activity			central_nervous_system(1)|kidney(1)	2						GCTCTTATTCCAGTCCTATAA	0.478			T	RET	papillary thyroid 								25	26					0	0	0.000147802	0	0
DLG5	9231	broad.mit.edu	37	10	79565430	79565430	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr10:79565430G>A	uc001jzk.2	-	27	5227	c.5157C>T	c.(5155-5157)CTC>CTT	p.L1719L	DLG5_uc001jzi.2_Silent_p.L474L|DLG5_uc001jzj.2_Silent_p.L1134L|DLG5_uc009xru.1_RNA	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1719					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			TGCCTTCAAAGAGTGGAATGG	0.527													29	35					0	0	0.000491102	0	0
IDE	3416	broad.mit.edu	37	10	94223509	94223510	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr10:94223509_94223510GG>TT	uc001kia.2	-	21	2815_2816	c.2739_2740CC>AA	c.(2737-2742)TCCCAG>TCAAAG	p.Q914K	IDE_uc010qnp.1_Missense_Mutation_p.Q359K|IDE_uc001khz.2_Missense_Mutation_p.Q359K	NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	914					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTATATTGCTGGGAGATGATTT	0.381													9	487					0	0	6.4e-05	0	0
LOXL4	84171	broad.mit.edu	37	10	100015377	100015377	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr10:100015377G>A	uc001kpa.1	-	10	1699	c.1548C>T	c.(1546-1548)TCC>TCT	p.S516S		NM_032211	NP_115587	Q96JB6	LOXL4_HUMAN	lysyl oxidase-like 4 precursor	516	SRCR 4.					extracellular space|membrane	copper ion binding|protein binding|scavenger receptor activity			ovary(3)|breast(1)|skin(1)	5		Colorectal(252;0.234)		Epithelial(162;2.14e-11)|all cancers(201;2.49e-09)		CGCCACCGTGGGAGCAGTGCA	0.687													28	32					0	0	0.000227799	0	0
WNT8B	7479	broad.mit.edu	37	10	102222943	102222943	+	Silent	SNP	T	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr10:102222943T>C	uc001krb.2	+	1	132	c.18T>C	c.(16-18)CCT>CCC	p.P6P		NM_003393	NP_003384	Q93098	WNT8B_HUMAN	wingless-type MMTV integration site family,	6					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|determination of dorsal identity|endoderm development|eye development|gastrulation|hypothalamus development|negative regulation of anterior neural cell fate commitment of the neural plate by Wnt receptor signaling pathway|otic placode formation|positive regulation of gene expression|response to estradiol stimulus|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			ovary(1)|breast(1)|large_intestine(1)|skin(1)	4		Colorectal(252;0.117)		Epithelial(162;1.87e-10)|all cancers(201;1.64e-08)		TTTCAAAGCCTTCTGTGTACA	0.443													36	72					0	0	0.000270559	0	0
CNNM2	54805	broad.mit.edu	37	10	104679596	104679596	+	Silent	SNP	C	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr10:104679596C>G	uc001kwm.2	+	1	1483	c.1359C>G	c.(1357-1359)CTC>CTG	p.L453L	CNNM2_uc001kwn.2_Silent_p.L453L|CNNM2_uc001kwl.2_Silent_p.L453L	NM_017649	NP_060119	Q9H8M5	CNNM2_HUMAN	cyclin M2 isoform 1	453	CBS 1.				ion transport	integral to membrane				ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.103)|all_hematologic(284;0.152)|Breast(234;0.198)		Epithelial(162;7.89e-09)|all cancers(201;1.82e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		TGACCCCACTCCGGGACTGCT	0.577													17	16					0	0	0.00074312	0	0
LRRC27	80313	broad.mit.edu	37	10	134161692	134161692	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr10:134161692G>A	uc010quw.1	+	6	953	c.758G>A	c.(757-759)TGG>TAG	p.W253*	LRRC27_uc001llf.2_Nonsense_Mutation_p.W253*|LRRC27_uc010quv.1_Nonsense_Mutation_p.W253*|LRRC27_uc001llg.2_RNA|LRRC27_uc001lli.2_Nonsense_Mutation_p.W253*|LRRC27_uc001llj.2_Nonsense_Mutation_p.W191*|LRRC27_uc001llk.3_Nonsense_Mutation_p.W126*	NM_030626	NP_085129	Q9C0I9	LRC27_HUMAN	leucine rich repeat containing 27 isoform a	253										ovary(1)	1		all_cancers(35;6.28e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;9.12e-05)|Epithelial(32;0.000116)|all cancers(32;0.000145)|BRCA - Breast invasive adenocarcinoma(275;0.218)		TCAGAGAACTGGCCCAGCGAG	0.562													13	28					0	0	0.000308642	0	0
KNDC1	85442	broad.mit.edu	37	10	135026355	135026355	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr10:135026355G>A	uc001llz.1	+	24	4373	c.4372G>A	c.(4372-4374)GAG>AAG	p.E1458K		NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1458					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		CAAGACCAGTGAGAAGGGGCC	0.647													16	16					0	0	0.000132079	0	0
BET1L	51272	broad.mit.edu	37	11	205627	205627	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:205627C>T	uc001loe.2	-	3	253	c.152G>A	c.(151-153)CGG>CAG	p.R51Q	BET1L_uc001lod.2_Missense_Mutation_p.R51Q|RIC8A_uc001lof.2_5'Flank|RIC8A_uc001log.2_5'Flank	NM_001098787	NP_001092257	Q9NYM9	BET1L_HUMAN	blocked early in transport 1 homolog (S.	51	Cytoplasmic (Potential).|t-SNARE coiled-coil homology.				protein transport|retrograde transport, endosome to Golgi	endosome|SNARE complex	SNAP receptor activity				0		all_cancers(49;1.58e-09)|all_epithelial(84;2.71e-06)|Breast(177;0.000162)|Ovarian(85;0.000626)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;4.2e-27)|Epithelial(43;2.8e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.7e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		ATCCAGGTACCGGTTCTGATC	0.582													8	37					0	0	0.000157383	0	0
LRRC56	115399	broad.mit.edu	37	11	551696	551696	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:551696C>T	uc010qvz.1	+	10	1347	c.842C>T	c.(841-843)TCC>TTC	p.S281F		NM_198075	NP_932341	Q8IYG6	LRC56_HUMAN	leucine rich repeat containing 56	281										skin(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CCCGAGCTGTCCCTGCCTGAG	0.697													5	13					0	0	8.12818e-05	0	0
OR10A2	341276	broad.mit.edu	37	11	6891672	6891672	+	Silent	SNP	C	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:6891672C>G	uc001meu.1	+	1	687	c.687C>G	c.(685-687)TCC>TCG	p.S229S		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	229	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		CTACATGTTCCTCACACCTCC	0.433													57	111					0	0	0.000781405	0	0
FIBIN	387758	broad.mit.edu	37	11	27016482	27016482	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:27016482C>T	uc001mrd.2	+	1	855	c.409C>T	c.(409-411)CTC>TTC	p.L137F		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	137						extracellular region|Golgi apparatus					0						GGACAAATCCCTCACTGAGCT	0.587													12	36					0	0	0.000151284	0	0
OR1S1	219959	broad.mit.edu	37	11	57982333	57982333	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:57982333C>T	uc010rkc.1	+	1	117	c.117C>T	c.(115-117)CTC>CTT	p.L39L		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	39	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				ATCAAAACCTCCTCTTTGTGC	0.453													13	121					0	0	0.000151284	0	0
SCGB1D4	404552	broad.mit.edu	37	11	62065029	62065029	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:62065029G>A	uc001ntd.1	-	2	211	c.157C>T	c.(157-159)CCA>TCA	p.P53S		NM_206998	NP_996881	Q6XE38	SG1D4_HUMAN	secretoglobin family 1D member 4 precursor	53						extracellular region	binding				0						AGAGCTTCTGGAGGTGGATTA	0.448													56	149					0	0	0.000781405	0	0
EHD1	10938	broad.mit.edu	37	11	64622932	64622932	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:64622932G>A	uc001obu.1	-	4	1197	c.942C>T	c.(940-942)CTC>CTT	p.L314L	EHD1_uc001obt.1_5'UTR|EHD1_uc001obv.1_Silent_p.L314L|EHD1_uc010rnq.1_Silent_p.L328L	NM_006795	NP_006786	Q9H4M9	EHD1_HUMAN	EH-domain containing 1	314					blood coagulation|cholesterol homeostasis|endocytic recycling|intracellular protein transport|low-density lipoprotein particle clearance|positive regulation of cholesterol storage|protein homooligomerization	early endosome membrane|lipid particle|plasma membrane|platelet dense tubular network membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|protein binding				0						TCTCTTTCTTGAGGGAGCTGA	0.512											OREG0004024	type=REGULATORY REGION|Gene=EHD1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	19	117					0	0	0.000295444	0	0
PCNXL3	399909	broad.mit.edu	37	11	65396095	65396095	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:65396095C>T	uc001oey.2	+	23	3732	c.3732C>T	c.(3730-3732)TTC>TTT	p.F1244F	PCNXL3_uc001oez.2_Silent_p.F131F	NM_032223	NP_115599	Q9H6A9	PCX3_HUMAN	pecanex-like 3	1244	Helical; (Potential).					integral to membrane					0						AGCTGCGTTTCGTGCTGACCT	0.602													12	41					0	0	0.000151284	0	0
RHOD	29984	broad.mit.edu	37	11	66834316	66834316	+	Silent	SNP	C	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:66834316C>A	uc001ojv.2	+	3	413	c.328C>A	c.(328-330)CGG>AGG	p.R110R		NM_014578	NP_055393	O00212	RHOD_HUMAN	ras homolog D precursor	110					regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity				0						CATCTTTAACCGGGTAGGTAC	0.547													5	67					0.000602214	0.00663565	0.000602214	1	0
P4HA3	283208	broad.mit.edu	37	11	73997389	73997389	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:73997389G>A	uc001ouz.2	-	6	860	c.817C>T	c.(817-819)CTC>TTC	p.L273F	P4HA3_uc001ouy.3_RNA|P4HA3_uc010rrj.1_Missense_Mutation_p.L273F	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit	273						endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					TCTGCCAAGAGCCTTTCATAT	0.498													23	137					0	0	0.000586117	0	0
C11orf82	220042	broad.mit.edu	37	11	82643213	82643213	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:82643213C>T	uc001ozt.2	+	6	1077	c.833C>T	c.(832-834)TCC>TTC	p.S278F	C11orf82_uc010rsr.1_5'UTR|C11orf82_uc010rss.1_5'UTR|C11orf82_uc009yvd.2_Intron	NM_145018	NP_659455	Q8IXT1	NOXIN_HUMAN	nitric oxide-inducible gene protein	278					apoptosis|cell cycle arrest	cytoplasm|nucleus				ovary(2)	2						AAGTCCATCTCCATTGCAGAG	0.408													11	62					0	0	0.000673444	0	0
DLG2	1740	broad.mit.edu	37	11	84245701	84245701	+	Missense_Mutation	SNP	G	A	A	rs145869624		TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:84245701G>A	uc001paj.2	-	2	419	c.116C>T	c.(115-117)CCA>CTA	p.P39L	DLG2_uc010rsz.1_Missense_Mutation_p.P39L|DLG2_uc010rta.1_Missense_Mutation_p.P39L|DLG2_uc001pak.2_Missense_Mutation_p.P144L|DLG2_uc001pal.1_Missense_Mutation_p.P39L	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	39						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				CACGAGTTCTGGGCCTCTTAC	0.408													30	58					0	0	0.000279167	0	0
FAT3	120114	broad.mit.edu	37	11	92087026	92087026	+	Missense_Mutation	SNP	G	T	T	rs75759020		TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:92087026G>T	uc001pdj.3	+	1	1765	c.1748G>T	c.(1747-1749)TGC>TTC	p.C583F		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	583	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AAAGTGGCTTGCCAGGGAGTT	0.428										TCGA Ovarian(4;0.039)			23	411					2.5401e-28	2.88295e-27	0.000781405	1	0
MMP8	4317	broad.mit.edu	37	11	102589230	102589231	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:102589230_102589231GG>AA	uc001phe.2	-	5	797_798	c.698_699CC>TT	c.(697-699)GCC>GTT	p.A233V	MMP8_uc010rut.1_Missense_Mutation_p.A168V|MMP8_uc010ruu.1_Missense_Mutation_p.A210V	NM_002424	NP_002415	P22894	MMP8_HUMAN	matrix metalloproteinase 8 preproprotein	233					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4	all_cancers(8;0.00092)|all_epithelial(12;0.00389)|Lung NSC(15;0.227)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0555)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.189)	BRCA - Breast invasive adenocarcinoma(274;0.0141)		GATACATCAAGGCACCAGGGTC	0.465													10	32					0	0	6.4e-05	0	0
DDI1	414301	broad.mit.edu	37	11	103908478	103908478	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:103908478G>A	uc001phr.2	+	1	1171	c.928G>A	c.(928-930)GAA>AAA	p.E310K	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	310					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		GATTCAAATTGAAGGTGATTT	0.473													6	68					0	0	3.59834e-05	0	0
TMPRSS13	84000	broad.mit.edu	37	11	117774799	117774799	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:117774799G>A	uc001prs.1	-	11	1492	c.1399C>T	c.(1399-1401)CTC>TTC	p.L467F	TMPRSS13_uc009yzr.1_Missense_Mutation_p.L146F|TMPRSS13_uc001prt.1_Missense_Mutation_p.L146F	NM_001077263	NP_001070731	Q9BYE2	TMPSD_HUMAN	transmembrane protease, serine 13	462	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			pancreas(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.00106)		ACCTCCCGGAGGAAGGGGGAT	0.532													9	20					0	0	6.40141e-05	0	0
KCNJ5	3762	broad.mit.edu	37	11	128781415	128781415	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr11:128781415G>A	uc001qet.2	+	2	561	c.247G>A	c.(247-249)GAC>AAC	p.D83N	KCNJ5_uc009zck.2_Missense_Mutation_p.D83N|KCNJ5_uc001qew.2_Missense_Mutation_p.D83N	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	83	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	CACCCTGGTGGACCTCAAGTG	0.557													18	63					0	0	0.000958276	0	0
KDM5A	5927	broad.mit.edu	37	12	417100	417100	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:417100G>A	uc001qif.1	-	23	3813	c.3450C>T	c.(3448-3450)GCC>GCT	p.A1150A	KDM5A_uc001qie.1_Silent_p.A1150A	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	1150					chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						TTGTCATCTTGGCTAGGTTGG	0.438			T 	NUP98	AML								46	106					0	0	0.000781405	0	0
IFFO1	25900	broad.mit.edu	37	12	6657268	6657269	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:6657268_6657269CG>AT	uc001qpd.1	-	7	1439_1440	c.1405_1406CG>AT	c.(1405-1407)CGG>ATG	p.R469M	IFFO1_uc001qoy.2_RNA|IFFO1_uc001qpa.1_Missense_Mutation_p.R109M|IFFO1_uc001qpb.1_Missense_Mutation_p.R146M|IFFO1_uc001qpe.1_RNA|IFFO1_uc010sfe.1_Missense_Mutation_p.R481M|IFFO1_uc001qpf.1_Missense_Mutation_p.R472M|IFFO1_uc001qoz.1_Missense_Mutation_p.R110M|IFFO1_uc001qpc.1_Missense_Mutation_p.R473M|IFFO1_uc001qpg.2_Missense_Mutation_p.R110M	NM_080730	NP_542768	Q0D2I5	IFFO1_HUMAN	intermediate filament family orphan isoform 2	469	Potential.					intermediate filament					0						CTCCTTCTCCCGGGTTTTGAAC	0.574													6	329					0	0	6.4e-05	0	0
CLEC2B	9976	broad.mit.edu	37	12	10007020	10007020	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:10007020G>A	uc001qwn.2	-	4	958	c.301C>T	c.(301-303)CGA>TGA	p.R101*		NM_005127	NP_005118	Q92478	CLC2B_HUMAN	C-type lectin, superfamily member 2	101	C-type lectin.|Extracellular (Potential).					integral to plasma membrane	sugar binding				0						TGTCCTGTTCGATTTTTTGCC	0.358													27	71					0	0	0.000339439	0	0
LRP6	4040	broad.mit.edu	37	12	12356313	12356314	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:12356313_12356314CC>AA	uc001rah.3	-	3	612_613	c.470_471GG>TT	c.(469-471)TGG>TTT	p.W157F	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.W157F	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	157	Extracellular (Potential).|LDL-receptor class B 3.|Beta-propeller 1.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				GCACTTCTCCCCAGTCTGTCCA	0.347													15	624					0	0	6.4e-05	0	0
PPFIBP1	8496	broad.mit.edu	37	12	27832436	27832436	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:27832436G>A	uc001ric.1	+	19	2025	c.1648G>A	c.(1648-1650)GAG>AAG	p.E550K	PPFIBP1_uc010sjr.1_Missense_Mutation_p.E381K|PPFIBP1_uc001rib.1_Missense_Mutation_p.E544K|PPFIBP1_uc001ria.2_Missense_Mutation_p.E519K|PPFIBP1_uc001rid.1_Missense_Mutation_p.E397K|PPFIBP1_uc001rif.1_Missense_Mutation_p.E57K	NM_003622	NP_003613	Q86W92	LIPB1_HUMAN	PTPRF interacting protein binding protein 1	550					cell adhesion	plasma membrane	protein binding		PPFIBP1/ALK(3)	soft_tissue(3)|kidney(1)|skin(1)	5	Lung SC(9;0.0873)					AACAGAAAAAGAGACAGCAGA	0.418													31	103					0	0	0.000409698	0	0
KRT82	3888	broad.mit.edu	37	12	52793820	52793820	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:52793820G>A	uc001sai.1	-	5	1006	c.891C>T	c.(889-891)GAC>GAT	p.D297D		NM_033033	NP_149022	Q9NSB4	KRT82_HUMAN	keratin 82	297	Coil 2.|Rod.					keratin filament	protein binding|structural constituent of epidermis			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.193)		TGGCGATGTCGTCATACTGCG	0.602													6	95					0	0	8.12818e-05	0	0
KRT79	338785	broad.mit.edu	37	12	53228034	53228034	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:53228034G>A	uc001sbb.2	-	1	44	c.11C>T	c.(10-12)TCC>TTC	p.S4F		NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	4	Head.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						CCGAGAGACGGAGGACCTCAT	0.612													6	27					0	0	3.59834e-05	0	0
LACRT	90070	broad.mit.edu	37	12	55025612	55025612	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:55025612C>T	uc001sgi.1	-	4	303	c.265G>A	c.(265-267)GAG>AAG	p.E89K		NM_033277	NP_150593	Q9GZZ8	LACRT_HUMAN	lacritin precursor	89					calcineurin-NFAT signaling pathway|positive regulation of epithelial cell proliferation|positive regulation of NFAT protein import into nucleus|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of secretion|protein localization in Golgi apparatus|tear secretion	extracellular region|stored secretory granule	collagen binding|fibronectin binding|glycoprotein binding|growth factor activity|laminin-1 binding|protein N-terminus binding			central_nervous_system(1)	1						ATACTTTTCTCCACTATGGAT	0.458													32	97					0	0	0.000491102	0	0
OR10A7	121364	broad.mit.edu	37	12	55615123	55615123	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:55615123C>T	uc010spf.1	+	1	315	c.315C>T	c.(313-315)TTC>TTT	p.F105F		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						ACTTCTTCTTCTTCTTTGGCA	0.423													26	124					0	0	0.000491102	0	0
OR6C6	283365	broad.mit.edu	37	12	55688116	55688116	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:55688116C>T	uc010sph.1	-	1	901	c.901G>A	c.(901-903)GAT>AAT	p.D301N		NM_001005493	NP_001005493	A6NF89	OR6C6_HUMAN	olfactory receptor, family 6, subfamily C,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|skin(1)	2						TGTAATACATCCCAGAAGACT	0.318													16	50					0	0	0.000958276	0	0
OR6C76	390326	broad.mit.edu	37	12	55820040	55820040	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:55820040G>A	uc010spm.1	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATCAGAAATGAAAAATAGAA	0.348													14	52					0	0	0.000151284	0	0
OR6C2	341416	broad.mit.edu	37	12	55846227	55846227	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:55846227C>T	uc001sgz.1	+	1	230	c.230C>T	c.(229-231)CCC>CTC	p.P77L		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	77	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						GTCTGCATTCCCAGATTCTTG	0.373													35	104					0	0	0.000692331	0	0
OR6C4	341418	broad.mit.edu	37	12	55945442	55945442	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:55945442C>T	uc010spp.1	+	1	432	c.432C>T	c.(430-432)TTC>TTT	p.F144F		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	144	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AACTAGTGTTCTGCTCCTGGT	0.463													43	131					0	0	0.000509022	0	0
MYL6B	140465	broad.mit.edu	37	12	56548872	56548872	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:56548872T>C	uc001sjs.2	+	4	363	c.236T>C	c.(235-237)GTG>GCG	p.V79A	MYL6B_uc009zoo.2_Missense_Mutation_p.V79A|MYL6B_uc001sjt.2_Missense_Mutation_p.V79A|MYL6B_uc001sju.1_Missense_Mutation_p.V79A	NM_002475	NP_002466	P14649	MYL6B_HUMAN	smooth muscle and non-muscle myosin alkali light	79	EF-hand 1.				muscle filament sliding|skeletal muscle tissue development	cytosol|muscle myosin complex|unconventional myosin complex	calcium ion binding|motor activity|protein binding|structural constituent of muscle				0			OV - Ovarian serous cystadenocarcinoma(18;0.0979)			TTTGACCGAGTGGGGGATGGC	0.582													54	164					0	0	0.000781405	0	0
MBD6	114785	broad.mit.edu	37	12	57919821	57919821	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:57919821C>T	uc001soj.1	+	6	1294	c.1070C>T	c.(1069-1071)TCA>TTA	p.S357L	MBD6_uc001sok.1_Missense_Mutation_p.S224L|MBD6_uc001sol.1_5'Flank	NM_052897	NP_443129	Q96DN6	MBD6_HUMAN	methyl-CpG binding domain protein 6	357	Pro-rich.					chromosome|nucleus	chromatin binding|DNA binding			central_nervous_system(3)|ovary(1)	4						TCCCACTCCTCATCACTTCGT	0.637													16	41					0	0	0.000422831	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85492217	85492217	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:85492217C>T	uc001tac.2	+	12	3083	c.2972C>T	c.(2971-2973)CCT>CTT	p.P991L	LRRIQ1_uc001tab.1_Missense_Mutation_p.P991L	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	991	LRR 5.									ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TGTGATACACCTACCATTGTA	0.328													21	79					0	0	0.000175454	0	0
HAL	3034	broad.mit.edu	37	12	96379885	96379885	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:96379885G>A	uc001tem.1	-	13	1402	c.1105C>T	c.(1105-1107)CGG>TGG	p.R369W	HAL_uc009zti.1_RNA|HAL_uc010suw.1_Missense_Mutation_p.R161W|HAL_uc010sux.1_Missense_Mutation_p.R369W	NM_002108	NP_002099	P42357	HUTH_HUMAN	histidine ammonia-lyase	369					biosynthetic process|histidine catabolic process	cytosol	histidine ammonia-lyase activity			ovary(2)|skin(1)	3					L-Histidine(DB00117)	AAGAGTGACCGAAACCGAAAA	0.403													22	32					0	0	0.000586117	0	0
UNC119B	84747	broad.mit.edu	37	12	121154786	121154787	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:121154786_121154787CC>AA	uc001tyz.2	+	4	1031_1032	c.584_585CC>AA	c.(583-585)CCC>CAA	p.P195Q		NM_001080533	NP_001074002	A6NIH7	U119B_HUMAN	unc-119 homolog B	195										haematopoietic_and_lymphoid_tissue(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TTCTGCATCCCCAGCAGTAGGA	0.465													18	715					0	0	6.4e-05	0	0
C12orf43	64897	broad.mit.edu	37	12	121442013	121442013	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:121442013G>A	uc001tzh.1	-	6	755	c.732C>T	c.(730-732)GCC>GCT	p.A244A	C12orf43_uc009zxa.1_Silent_p.A275A|C12orf43_uc010szo.1_Silent_p.A203A|C12orf43_uc010szp.1_Silent_p.A234A|C12orf43_uc001tzi.1_Silent_p.A245A	NM_022895	NP_075046	Q96C57	CL043_HUMAN	hypothetical protein LOC64897	244	Lys-rich.										0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					AGGTCTCGCTGGCCTTCTTTG	0.567													179	571					0	0	0.000781405	0	0
OASL	8638	broad.mit.edu	37	12	121465539	121465540	+	Missense_Mutation	DNP	CC	AA	AA	rs140216868		TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:121465539_121465540CC>AA	uc001tzj.1	-	4	744_745	c.738_739GG>TT	c.(736-741)ATGGGT>ATTTGT	p.246_247MG>IC	OASL_uc001tzk.1_Intron	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	246_247					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TCTTCAGTACCCATTTCCCAGG	0.48													13	768					0	0	6.4e-05	0	0
VPS33A	65082	broad.mit.edu	37	12	122720409	122720409	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:122720409G>A	uc001ucd.2	-	11	1477	c.1364C>T	c.(1363-1365)CCG>CTG	p.P455L	VPS33A_uc001ucc.2_RNA	NM_022916	NP_075067	Q96AX1	VP33A_HUMAN	vacuolar protein sorting 33A	455					lysosome localization|melanosome localization|platelet formation|protein transport|regulation of developmental pigmentation|vesicle docking involved in exocytosis	early endosome|late endosome membrane|lysosomal membrane|perinuclear region of cytoplasm	protein binding			skin(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000336)|Epithelial(86;0.000606)|BRCA - Breast invasive adenocarcinoma(302;0.23)		CCCCGTCTGCGGTTTCAGCAG	0.493													76	139					0	0	0.000781405	0	0
DNAH10	196385	broad.mit.edu	37	12	124285925	124285925	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:124285925G>A	uc001uft.3	+	15	2231	c.2206G>A	c.(2206-2208)GAA>AAA	p.E736K	DNAH10_uc010tav.1_Missense_Mutation_p.E278K|DNAH10_uc010taw.1_Missense_Mutation_p.E221K	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	736	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TCATTCCCAGGAACTGCTCCG	0.448													36	77					0	0	0.000692331	0	0
DNAH10	196385	broad.mit.edu	37	12	124358152	124358152	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:124358152C>T	uc001uft.3	+	45	7504	c.7479C>T	c.(7477-7479)ATC>ATT	p.I2493I		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2493	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CCATGGATATCCAAAGAAATT	0.463													10	45					0	0	0.000442599	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834239	125834239	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:125834239C>T	uc001uhe.1	+	2	302	c.294C>T	c.(292-294)CCC>CCT	p.P98P		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	98	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		AGATAATCCCCCAGGAGCTCC	0.498													32	98					0	0	0.000491102	0	0
P2RX2	22953	broad.mit.edu	37	12	133197092	133197092	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:133197092G>A	uc001ukj.1	+	7	697	c.697G>A	c.(697-699)GAC>AAC	p.D233N	P2RX2_uc001uki.1_Missense_Mutation_p.D233N|P2RX2_uc001ukk.1_Missense_Mutation_p.D233N|P2RX2_uc001ukl.1_Missense_Mutation_p.D209N|P2RX2_uc001ukm.1_Missense_Mutation_p.D161N|P2RX2_uc001ukn.1_Missense_Mutation_p.D141N|P2RX2_uc009zyt.1_Missense_Mutation_p.D233N|P2RX2_uc001uko.1_Missense_Mutation_p.R197Q	NM_170682	NP_733782	Q9UBL9	P2RX2_HUMAN	purinergic receptor P2X2 isoform A	233	Extracellular (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling|protein homooligomerization	integral to membrane	ATP binding|extracellular ATP-gated cation channel activity|identical protein binding|purinergic nucleotide receptor activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0767)		OV - Ovarian serous cystadenocarcinoma(86;2.32e-08)|Epithelial(86;8.62e-08)|all cancers(50;4.5e-06)		CGAGGCCTCCGACCTCTACTG	0.632													19	41					0	0	0.000958276	0	0
POLE	5426	broad.mit.edu	37	12	133257759	133257759	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr12:133257759C>T	uc001uks.1	-	2	213	c.169G>A	c.(169-171)GGT>AGT	p.G57S	POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Missense_Mutation_p.G57S	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	57					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GTCTTCTCACCAGGCTCCTTC	0.547								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					5	118					0	0	8.12818e-05	0	0
LOC284232	284232	broad.mit.edu	37	13	19412884	19412884	+	RNA	SNP	T	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr13:19412884T>C	uc010tcj.1	-	1		c.33226A>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GCAATATCTGTCTTCAAAATG	0.269													4	157					0	0	3.59834e-05	0	0
LOC284232	284232	broad.mit.edu	37	13	19413025	19413025	+	RNA	SNP	A	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr13:19413025A>G	uc010tcj.1	-	1		c.33085T>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						AATAACCTGCACATCCATGCA	0.299													3	29					0	0	3.59834e-05	0	0
LOC284232	284232	broad.mit.edu	37	13	19414201	19414201	+	RNA	SNP	G	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr13:19414201G>C	uc010tcj.1	-	1		c.31909C>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						CAACTTCTTTGTTATATTGTT	0.318													3	54					0	0	6.4e-05	0	0
TUBA3C	7278	broad.mit.edu	37	13	19748260	19748260	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr13:19748260C>T	uc009zzj.2	-	5	1145	c.1096G>A	c.(1096-1098)GGA>AGA	p.G366R		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	366					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		GCCAGGTCTCCCCCAGGGACC	0.587													12	38					0	0	0.000219431	0	0
FGF9	2254	broad.mit.edu	37	13	22275367	22275367	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr13:22275367C>T	uc001uog.2	+	3	1257	c.420C>T	c.(418-420)TTC>TTT	p.F140F		NM_002010	NP_002001	P31371	FGF9_HUMAN	fibroblast growth factor 9 precursor	140					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|male gonad development|positive regulation of cell division	extracellular space	growth factor activity|heparin binding				0		all_cancers(29;1.23e-20)|all_epithelial(30;9.83e-19)|all_lung(29;9.64e-17)|Lung SC(185;0.0262)|Breast(139;0.106)		all cancers(112;3.92e-05)|Epithelial(112;0.000166)|OV - Ovarian serous cystadenocarcinoma(117;0.00314)|Lung(94;0.163)		GAGAACAGTTCGAAGAAAACT	0.294													7	24					0	0	0.000274275	0	0
GPR18	2841	broad.mit.edu	37	13	99907337	99907337	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr13:99907337A>G	uc001voe.3	-	3	1291	c.790T>C	c.(790-792)TAC>CAC	p.Y264H	UBAC2_uc001voa.3_Intron|UBAC2_uc010tiu.1_Intron|UBAC2_uc001vob.3_Intron|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Intron|UBAC2_uc001voc.2_Intron|UBAC2_uc010tiw.1_Intron|GPR18_uc010afv.2_Missense_Mutation_p.Y264H	NM_005292	NP_005283	Q14330	GPR18_HUMAN	G protein-coupled receptor 18	264	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Glycine(DB00145)	CAGGGATTGTAACTGTTCTCC	0.498													13	92					0	0	0.000308642	0	0
P704P	641455	broad.mit.edu	37	14	20020012	20020012	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr14:20020012G>A	uc001vwc.3	-	1	261	c.209C>T	c.(208-210)CCC>CTC	p.P70L	P704P_uc001vwb.3_RNA	NM_001145442	NP_001138914	A6NI47	POTEM_HUMAN	prostate-specific P704P	70											0						CCTGCACCAGGGGAAGCAGTG	0.592													59	329					0	0	0.000781405	0	0
OR4L1	122742	broad.mit.edu	37	14	20528638	20528638	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr14:20528638G>A	uc001vwn.1	+	1	435	c.435G>A	c.(433-435)GCG>GCA	p.A145A		NM_001004717	NP_001004717	Q8NH43	OR4L1_HUMAN	olfactory receptor, family 4, subfamily L,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		AGGGGTTTGCGATACTTTCAT	0.388													24	53					0	0	0.000375601	0	0
Unknown	0	broad.mit.edu	37	14	22192101	22192101	+	RNA	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr14:22192101C>T	uc001wbn.2	+	1		c.94C>T								Homo sapiens mRNA for T cell receptor alpha variable 3, partial cds, clone: SEB 36.																		GAAAGGACCCCCCCAATCCCG	0.592													27	56					0	0	0.000184323	0	0
LTBP2	4053	broad.mit.edu	37	14	75052732	75052732	+	Missense_Mutation	SNP	C	T	T	rs146027819		TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr14:75052732C>T	uc001xqa.2	-	3	1042	c.655G>A	c.(655-657)GAG>AAG	p.E219K		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	219	EGF-like 1.				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		ATGACCTCCTCGCAGCGGGCT	0.672													8	9					0	0	0.000274275	0	0
ATG2B	55102	broad.mit.edu	37	14	96792071	96792071	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr14:96792071G>A	uc001yfi.2	-	15	2717	c.2352C>T	c.(2350-2352)TTC>TTT	p.F784F		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	784										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		CTAGATCTGTGAAGGCTAAAT	0.368													7	30					0	0	8.12818e-05	0	0
JAG2	3714	broad.mit.edu	37	14	105612994	105612994	+	Nonsense_Mutation	SNP	A	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr14:105612994A>C	uc001yqg.2	-	21	2951	c.2547T>G	c.(2545-2547)TAT>TAG	p.Y849*	JAG2_uc010axf.2_5'UTR|JAG2_uc001yqf.2_Nonsense_Mutation_p.Y253*|JAG2_uc001yqh.2_Nonsense_Mutation_p.Y811*	NM_002226	NP_002217	Q9Y219	JAG2_HUMAN	jagged 2 isoform a precursor	849	Extracellular (Potential).|EGF-like 16; calcium-binding (Potential).				auditory receptor cell fate commitment|cell communication|cell cycle|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation|spermatogenesis|thymic T cell selection	integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding			lung(3)|breast(2)	5		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		AGCTACAGCGATACCCGTTGA	0.677													4	13					0	0	0.00024832	0	0
CXADRP2	646243	broad.mit.edu	37	15	22016259	22016259	+	Missense_Mutation	SNP	T	C	C	rs140087837	by1000genomes	TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr15:22016259T>C	uc010tzk.1	-	1	620	c.458A>G	c.(457-459)GAC>GGC	p.D153G		NR_024387				RecName: Full=Coxsackievirus and adenovirus receptor; AltName: Full=Coxsackievirus B-adenovirus receptor; AltName: Full=HCVADR;          Short=hCAR; AltName: Full=CVB3-binding protein; Flags: Precursor;												0						TTTCTGTGAGTCAGACAATTT	0.363													5	42					0	0	0.000566183	0	0
OR4N4	283694	broad.mit.edu	37	15	22382673	22382673	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr15:22382673C>T	uc001yuc.1	+	7	1182	c.201C>T	c.(199-201)GCC>GCT	p.A67A	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Silent_p.A67A	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		GCAACTTGGCCTTCCTGGATG	0.483													49	279					0	0	0.000781405	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414338	22414338	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr15:22414338G>A	uc001yuf.2	+	1	637	c.637G>A	c.(637-639)GAA>AAA	p.E213K		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						TCATAACCAGGAAGTGAAAGC	0.378													5	43					0	0	0.000602214	0	0
Unknown	0	broad.mit.edu	37	15	22473164	22473164	+	RNA	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr15:22473164G>A	uc001yuj.1	-	2		c.107C>T								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H6.																		GAGGGACAGGGTCTCCGAAGG	0.637													10	74					0	0	6.40141e-05	0	0
TUBGCP5	114791	broad.mit.edu	37	15	22833544	22833544	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr15:22833544C>G	uc001yur.3	+	1	150	c.20C>G	c.(19-21)CCG>CGG	p.P7R	TUBGCP5_uc001yuq.2_Missense_Mutation_p.P7R	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	7					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		CACGGGCCACCGTGGAGTCGG	0.721													4	4					0	0	0.00024832	0	0
TUBGCP5	114791	broad.mit.edu	37	15	22868844	22868844	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr15:22868844C>T	uc001yur.3	+	20	2846	c.2716C>T	c.(2716-2718)CTA>TTA	p.L906L	TUBGCP5_uc001yuq.2_Silent_p.L906L	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	906					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		TTCCAAGATTCTACACAGTAC	0.393													9	39					0	0	0.000442599	0	0
RYR3	6263	broad.mit.edu	37	15	34040353	34040353	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr15:34040353G>A	uc001zhi.2	+	54	8098	c.8028G>A	c.(8026-8028)CTG>CTA	p.L2676L	RYR3_uc010bar.2_Silent_p.L2676L	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2676	3.|Cytoplasmic (By similarity).|4 X approximate repeats.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GAGAGTCCCTGAAAACCATGC	0.527													27	75					0	0	0.000339439	0	0
RYR3	6263	broad.mit.edu	37	15	34078042	34078042	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr15:34078042C>T	uc001zhi.2	+	66	9518	c.9448C>T	c.(9448-9450)CCT>TCT	p.P3150S	RYR3_uc010bar.2_Missense_Mutation_p.P3150S	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3150					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GGAGCGGGGTCCTGAGAACCT	0.567													34	112					0	0	0.000191422	0	0
SLC12A1	6557	broad.mit.edu	37	15	48539600	48539600	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr15:48539600G>A	uc001zwn.3	+	13	1843	c.1627G>A	c.(1627-1629)GAA>AAA	p.E543K	SLC12A1_uc010uew.1_Missense_Mutation_p.E349K|SLC12A1_uc010bem.2_Missense_Mutation_p.E543K|SLC12A1_uc001zwq.3_Missense_Mutation_p.E314K|SLC12A1_uc001zwr.3_Missense_Mutation_p.E270K	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	543	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	GAAAAACAATGAACCCCTGAG	0.338													9	35					0	0	0.000442599	0	0
NEO1	4756	broad.mit.edu	37	15	73536753	73536753	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr15:73536753C>T	uc002avm.3	+	9	1662	c.1520C>T	c.(1519-1521)ACC>ATC	p.T507I	NEO1_uc010ukx.1_Missense_Mutation_p.T507I|NEO1_uc010uky.1_Missense_Mutation_p.T507I|NEO1_uc010ukz.1_5'UTR|NEO1_uc002avn.3_Missense_Mutation_p.T172I	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	507	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						ATGCCAGCGACCGTGTACATC	0.458													10	43					0	0	6.40141e-05	0	0
CHRNB4	1143	broad.mit.edu	37	15	78921679	78921679	+	Missense_Mutation	SNP	G	A	A	rs146608683		TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr15:78921679G>A	uc002bed.1	-	5	1080	c.968C>T	c.(967-969)TCG>TTG	p.S323L	CHRNB4_uc002bee.1_Intron|CHRNB4_uc010blh.1_Missense_Mutation_p.S141L	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	323	Cytoplasmic (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						GGTGCTGGGCGAGCGGTGGTG	0.612													14	48					0	0	0.000422831	0	0
TM6SF1	53346	broad.mit.edu	37	15	83788376	83788377	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr15:83788376_83788377GG>TT	uc002bjp.2	+	4	450_451	c.341_342GG>TT	c.(340-342)TGG>TTT	p.W114F	TM6SF1_uc010bmq.2_Missense_Mutation_p.W114F|TM6SF1_uc002bjq.2_Missense_Mutation_p.W114F|TM6SF1_uc010bmr.2_RNA|TM6SF1_uc002bjr.2_5'Flank	NM_023003	NP_075379	Q9BZW5	TM6S1_HUMAN	transmembrane 6 superfamily member 1 isoform 1	114	Helical; (Potential).					integral to membrane				ovary(1)	1						ATCTGCTACTGGGATGGCTCTG	0.46													8	289					0	0	6.4e-05	0	0
C15orf42	90381	broad.mit.edu	37	15	90168917	90168917	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr15:90168917C>T	uc002boe.2	+	20	5376	c.5376C>T	c.(5374-5376)GAC>GAT	p.D1792D	C15orf42_uc010upv.1_RNA	NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	1792					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			GGATCTGTGACCTGAGAGAAG	0.527													12	51					0	0	6.40141e-05	0	0
PLIN1	5346	broad.mit.edu	37	15	90220677	90220678	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr15:90220677_90220678GG>TT	uc010upx.1	-	2	153_154	c.43_44CC>AA	c.(43-45)CCT>AAT	p.P15N	PLIN1_uc002boh.2_Missense_Mutation_p.P15N	NM_001145311	NP_001138783	O60240	PLIN1_HUMAN	perilipin 1	15					triglyceride catabolic process	lipid particle	lipid binding			central_nervous_system(1)|skin(1)	2						GTTACTTACAGGGAGGTCTCCA	0.554													8	288					0	0	6.4e-05	0	0
TARSL2	123283	broad.mit.edu	37	15	102197160	102197160	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr15:102197160C>T	uc002bxm.2	-	18	2280	c.2225G>A	c.(2224-2226)CGA>CAA	p.R742Q	TARSL2_uc002bxl.2_3'UTR|TARSL2_uc010usi.1_RNA	NM_152334	NP_689547	A2RTX5	SYTC2_HUMAN	threonyl-tRNA synthetase-like 2	742					threonyl-tRNA aminoacylation	cytoplasm	ATP binding|threonine-tRNA ligase activity			ovary(2)	2	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CTGTGCATTTCGTATTTTCTT	0.318													5	32					0	0	0.000602214	0	0
AXIN1	8312	broad.mit.edu	37	16	338190	338190	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr16:338190G>A	uc002cgp.1	-	11	2698	c.2521C>T	c.(2521-2523)CGA>TGA	p.R841*	AXIN1_uc002cgq.1_Nonsense_Mutation_p.R805*	NM_003502	NP_003493	O15169	AXIN1_HUMAN	axin 1 isoform a	841	DIX.				activation of JUN kinase activity|activation of protein kinase activity|apoptosis|axial mesoderm formation|canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|cellular protein complex assembly|cellular response to organic cyclic compound|cytoplasmic microtubule organization|determination of left/right symmetry|dorsal/ventral axis specification|embryonic eye morphogenesis|embryonic skeletal joint morphogenesis|forebrain anterior/posterior pattern formation|muscle cell development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|olfactory placode formation|optic placode formation|positive regulation of JNK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity|regulation of catenin import into nucleus|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway involved in somitogenesis	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|cell cortex|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|cytosol|lateral plasma membrane|nucleus|perinuclear region of cytoplasm|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|I-SMAD binding|p53 binding|protein complex scaffold|protein homodimerization activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			breast(1)|liver(1)	2		all_cancers(16;2.75e-07)|all_epithelial(16;1.6e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00774)|all_lung(18;0.0187)				TCGTCCTCTCGAACCTCCTCA	0.592													25	88					0	0	0.000878237	0	0
SRL	6345	broad.mit.edu	37	16	4254574	4254574	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr16:4254574G>A	uc002cvz.3	-	2	136	c.123C>T	c.(121-123)ACC>ACT	p.T41T	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	500						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						TCAGCATGAGGGTCTTCTCGA	0.582													39	64					0	0	0.000781405	0	0
ABCC1	4363	broad.mit.edu	37	16	16110416	16110416	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr16:16110416C>T	uc010bvi.2	+	5	728	c.553C>T	c.(553-555)CAG>TAG	p.Q185*	ABCC1_uc010bvj.2_Nonsense_Mutation_p.Q185*|ABCC1_uc010bvk.2_Nonsense_Mutation_p.Q185*|ABCC1_uc010bvl.2_Nonsense_Mutation_p.Q185*|ABCC1_uc010bvm.2_Nonsense_Mutation_p.Q185*|ABCC1_uc002del.3_Nonsense_Mutation_p.Q69*|ABCC1_uc010bvn.2_Nonsense_Mutation_p.Q48*	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	185	Helical; Name=5.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	CTTACTCATTCAGCTCGTCTT	0.493													56	220					0	0	0.000781405	0	0
DNAH3	55567	broad.mit.edu	37	16	20986677	20986677	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr16:20986677C>T	uc010vbe.1	-	51	8137	c.8137G>A	c.(8137-8139)GAA>AAA	p.E2713K	DNAH3_uc010vbd.1_Missense_Mutation_p.E148K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2713	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TTGGCAGTTTCCTCGGAGGTG	0.488													82	144					0	0	0.000781405	0	0
POLR3E	55718	broad.mit.edu	37	16	22334249	22334249	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr16:22334249C>T	uc002dkk.2	+	14	1221	c.1065C>T	c.(1063-1065)TTC>TTT	p.F355F	POLR3E_uc002dkj.1_Silent_p.F355F|POLR3E_uc002dkm.2_Silent_p.F319F|POLR3E_uc010vbr.1_Silent_p.F355F|POLR3E_uc002dkl.2_Silent_p.F355F|POLR3E_uc010vbs.1_Silent_p.F319F|POLR3E_uc010vbt.1_Silent_p.F299F	NM_018119	NP_060589	Q9NVU0	RPC5_HUMAN	RNA polymerase III polypeptide E	355					innate immune response|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA-directed RNA polymerase activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(48;0.012)		GCCGAGACTTCGTTGTAAGTA	0.642													8	8					0	0	0.000274275	0	0
GTF3C1	2975	broad.mit.edu	37	16	27556813	27556813	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr16:27556813A>C	uc002dov.1	-	2	293	c.253T>G	c.(253-255)TTG>GTG	p.L85V	GTF3C1_uc002dou.2_Missense_Mutation_p.L85V	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	85						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						CTAGACTCCAAAATTCCAGTT	0.428													13	21					0	0	0.00010058	0	0
IL27	246778	broad.mit.edu	37	16	28511054	28511054	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr16:28511054G>A	uc002dqc.2	-	5	673	c.650C>T	c.(649-651)GCC>GTC	p.A217V	uc010vct.1_Intron	NM_145659	NP_663634	Q8NEV9	IL27A_HUMAN	interleukin 27 precursor	217					inflammatory response|innate immune response|positive regulation of interferon-gamma biosynthetic process|regulation of defense response to virus|regulation of T cell proliferation|regulation of T-helper 1 cell differentiation	extracellular space	cytokine activity|interleukin-27 receptor binding				0						CTCCCGCACGGCCCGAGATAA	0.662													4	20					0	0	0.00024832	0	0
SH2B1	25970	broad.mit.edu	37	16	28880631	28880631	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr16:28880631G>A	uc002dri.2	+	7	1675	c.1236G>A	c.(1234-1236)CTG>CTA	p.L412L	uc010vct.1_Intron|SH2B1_uc010vdc.1_Silent_p.L102L|SH2B1_uc002drj.2_Silent_p.L412L|SH2B1_uc002drk.2_Silent_p.L412L|SH2B1_uc002drl.2_Silent_p.L412L|SH2B1_uc010vdd.1_Silent_p.L76L|SH2B1_uc010vde.1_Silent_p.L412L|SH2B1_uc002drm.2_Silent_p.L412L	NM_001145795	NP_001139267	Q9NRF2	SH2B1_HUMAN	SH2B adaptor protein 1 isoform 1	412	Interaction with JAK2 (low-affinity binding; independent of JAK2 phosphorylation) (By similarity).				blood coagulation|intracellular signal transduction	cytosol|membrane|nucleus	signal transducer activity			ovary(2)	2						TGTCCTGCCTGAATCACTCGG	0.627													17	38					0	0	0.000958276	0	0
Unknown	0	broad.mit.edu	37	16	32077388	32077388	+	RNA	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr16:32077388G>A	uc010vft.1	+	1		c.3G>A			uc010vfu.1_5'Flank					Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:aims0058h.																		CCCAGTGTGAGGTGCAGCTGG	0.532													28	112					0	0	0.000147802	0	0
CDH5	1003	broad.mit.edu	37	16	66436860	66436860	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr16:66436860G>A	uc002eom.3	+	12	2299	c.2143G>A	c.(2143-2145)GAG>AAG	p.E715K		NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	715	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		GAAGAAGGACGAGGCGGACCA	0.682													7	17					0	0	0.000157383	0	0
JPH3	57338	broad.mit.edu	37	16	87678374	87678374	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr16:87678374C>T	uc002fkd.2	+	2	1147	c.893C>T	c.(892-894)TCC>TTC	p.S298F	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	298	Cytoplasmic (Potential).|MORN 7.				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		GACAAACGCTCCGGCTTCGGC	0.682													5	24					0	0	3.59834e-05	0	0
SHBG	6462	broad.mit.edu	37	17	7534095	7534095	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr17:7534095C>T	uc002gie.2	+	3	339	c.301C>T	c.(301-303)CGA>TGA	p.R101*	SHBG_uc010cmo.2_Nonsense_Mutation_p.R43*|SHBG_uc010cmp.2_Nonsense_Mutation_p.R43*|SHBG_uc010cmq.2_Nonsense_Mutation_p.R43*|SHBG_uc010cmr.2_Nonsense_Mutation_p.R43*|SHBG_uc010cms.2_Nonsense_Mutation_p.R43*|SHBG_uc010cmt.2_Nonsense_Mutation_p.R43*|SHBG_uc010cmu.2_Nonsense_Mutation_p.R43*|SAT2_uc002gib.1_5'Flank|SAT2_uc002gic.2_5'Flank|SHBG_uc010cmz.2_Nonsense_Mutation_p.R43*|SHBG_uc010cmv.2_Nonsense_Mutation_p.R43*|SHBG_uc010cmw.2_Nonsense_Mutation_p.R43*|SHBG_uc010cmx.2_Nonsense_Mutation_p.R43*|SHBG_uc010cmy.2_Nonsense_Mutation_p.R43*|SHBG_uc002gid.3_Nonsense_Mutation_p.R43*|SHBG_uc010cnd.2_Nonsense_Mutation_p.R101*|SHBG_uc010cna.2_Nonsense_Mutation_p.R101*|SHBG_uc010vue.1_Nonsense_Mutation_p.R101*|SHBG_uc010vuf.1_Nonsense_Mutation_p.R101*|SHBG_uc010cnb.2_Nonsense_Mutation_p.R101*|SHBG_uc010cnc.2_Nonsense_Mutation_p.R101*	NM_001040	NP_001031	P04278	SHBG_HUMAN	sex hormone-binding globulin isoform 1	101	Laminin G-like 1.				hormone transport	extracellular region	androgen binding|protein homodimerization activity	p.?(1)			0		all_cancers(10;0.0867)		READ - Rectum adenocarcinoma(115;0.168)	Danazol(DB01406)|Dromostanolone(DB00858)|Estradiol(DB00783)|Estrone(DB00655)|Fluoxymesterone(DB01185)|Hydrocortisone(DB00741)|Mitotane(DB00648)|Norethindrone(DB00717)|Testosterone(DB00624)	GCTGGGACTTCGAGACGGCAG	0.552													7	28					0	0	0.000157383	0	0
RAPGEFL1	51195	broad.mit.edu	37	17	38348880	38348880	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr17:38348880G>A	uc010cwu.1	+	12	1551	c.1061G>A	c.(1060-1062)AGC>AAC	p.S354N	RAPGEFL1_uc010wfd.1_Missense_Mutation_p.S290N	NM_016339	NP_057423	Q9UHV5	RPGFL_HUMAN	Rap guanine nucleotide exchange factor	560	Ras-GEF.				G-protein coupled receptor protein signaling pathway|nervous system development|small GTPase mediated signal transduction	intracellular|membrane fraction	guanyl-nucleotide exchange factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AACCACAAAAGCTACCGAGAA	0.532													74	144					0	0	0.000781405	0	0
SMARCE1	6605	broad.mit.edu	37	17	38787946	38787946	+	Splice_Site	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr17:38787946C>T	uc002hux.2	-	9	839	c.715_splice	c.e9-1	p.R239_splice	SMARCE1_uc010wff.1_Splice_Site_p.R204_splice|SMARCE1_uc010wfg.1_Splice_Site_p.R169_splice|SMARCE1_uc002huy.2_Splice_Site_p.R204_splice|SMARCE1_uc010wfh.1_Splice_Site_p.R169_splice|SMARCE1_uc010wfi.1_Splice_Site_p.R221_splice	NM_003079	NP_003070	Q969G3	SMCE1_HUMAN	SWI/SNF-related matrix-associated						chromatin modification|negative regulation of transcription, DNA-dependent|nervous system development|nucleosome disassembly|regulation of transcription from RNA polymerase II promoter	nBAF complex|npBAF complex|nuclear chromosome|SWI/SNF complex|transcriptional repressor complex	chromatin binding|DNA binding|N-acetyltransferase activity|protein binding|protein N-terminus binding|transcription coactivator activity				0		Breast(137;0.000812)				CTAGTTTTCGCTGCAAGACAG	0.348													21	33					0	0	0.000229342	0	0
KRT36	8689	broad.mit.edu	37	17	39642737	39642737	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr17:39642737G>A	uc002hwt.2	-	7	1295	c.1295C>T	c.(1294-1296)CCC>CTC	p.P432L		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	432	Tail.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				CGGGGTGCAGGGCACAGAGGG	0.602													9	18					0	0	0.000274275	0	0
KRT13	3860	broad.mit.edu	37	17	39661729	39661729	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr17:39661729C>T	uc002hwu.1	-	1	137	c.74G>A	c.(73-75)GGA>GAA	p.G25E	KRT13_uc002hwv.1_Missense_Mutation_p.G25E|KRT13_uc002hww.2_5'UTR|KRT13_uc010wfr.1_5'UTR|KRT13_uc010cxo.2_Missense_Mutation_p.G25E|KRT13_uc002hwx.1_Missense_Mutation_p.G25E	NM_153490	NP_705694	P13646	K1C13_HUMAN	keratin 13 isoform a	25	Gly-rich.|Head.				epidermis development	intermediate filament	structural molecule activity			ovary(2)|skin(2)|pancreas(1)	5		Breast(137;0.000286)				ACCACGGCCTCCTCCCAGCTG	0.557													15	30					0	0	0.00074312	0	0
ITGB3	3690	broad.mit.edu	37	17	45384950	45384950	+	Nonsense_Mutation	SNP	C	T	T	rs121918450	byFrequency	TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr17:45384950C>T	uc002ilj.2	+	14	2268	c.2248C>T	c.(2248-2250)CGA>TGA	p.R750*	ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	750	Cytoplasmic (Potential).				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	CATCCACGACCGAAAAGAATT	0.532													10	21					0	0	0.00010058	0	0
ABI3	51225	broad.mit.edu	37	17	47297556	47297556	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr17:47297556C>T	uc002iop.1	+	6	1168	c.670C>T	c.(670-672)CCC>TCC	p.P224S	ABI3_uc002ioq.1_Missense_Mutation_p.P218S	NM_016428	NP_057512	Q9P2A4	ABI3_HUMAN	NESH protein isoform 1	224	Pro-rich.				cellular component movement|regulation of cell migration	cytoplasm|lamellipodium	protein binding				0			Epithelial(5;6.37e-06)|all cancers(6;6.36e-05)			CGGTGGGGCCCCCACGCCCAA	0.687										HNSCC(55;0.14)			9	17					0	0	0.000673444	0	0
ABCA6	23460	broad.mit.edu	37	17	67083580	67083580	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr17:67083580G>A	uc002jhw.1	-	29	3908	c.3733C>T	c.(3733-3735)CCA>TCA	p.P1245S		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1245					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					GGTTCTTCTGGATTTGGCTTA	0.373													25	148					0	0	0.000878237	0	0
ABCA5	23461	broad.mit.edu	37	17	67246096	67246096	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr17:67246096G>A	uc002jif.2	-	36	5933	c.4715C>T	c.(4714-4716)CCT>CTT	p.P1572L	ABCA5_uc002jib.2_Missense_Mutation_p.P538L|ABCA5_uc002jic.2_Missense_Mutation_p.P795L|ABCA5_uc002jid.2_Missense_Mutation_p.P489L|ABCA5_uc002jie.2_RNA|ABCA5_uc002jig.2_Missense_Mutation_p.P1572L	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	1572					cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					ATCTTCCTTAGGAATTTTATA	0.274													7	41					0	0	0.000274275	0	0
GPR142	350383	broad.mit.edu	37	17	72366722	72366722	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr17:72366722G>A	uc010wqy.1	+	3	421	c.421G>A	c.(421-423)GAA>AAA	p.E141K	GPR142_uc010wqx.1_Missense_Mutation_p.E53K	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	141	Extracellular (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CCAGGAGTTTGAAAGCCACTG	0.637													6	35					0	0	8.12818e-05	0	0
OTOP2	92736	broad.mit.edu	37	17	72926688	72926688	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr17:72926688C>T	uc010wrp.1	+	7	1047	c.958C>T	c.(958-960)CGC>TGC	p.R320C		NM_178160	NP_835454	Q7RTS6	OTOP2_HUMAN	otopetrin 2	320						integral to membrane				ovary(3)|large_intestine(1)	4	all_lung(278;0.172)|Lung NSC(278;0.207)					GGACGGGAGCCGCACCAGGCA	0.582													5	30					0	0	3.59834e-05	0	0
RNF213	57674	broad.mit.edu	37	17	78321975	78321975	+	Silent	SNP	G	A	A	rs144070062	byFrequency	TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr17:78321975G>A	uc002jyh.1	+	4	4282	c.4059G>A	c.(4057-4059)GCG>GCA	p.A1353A		NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			GGTTCGCAGCGGAGTGGCTGT	0.617													25	33					0	0	0.000720815	0	0
THOC4	10189	broad.mit.edu	37	17	79846180	79846180	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr17:79846180C>T	uc002kbu.2	-	5	723	c.717G>A	c.(715-717)AGG>AGA	p.R239R		NM_005782	NP_005773	Q86V81	THOC4_HUMAN	THO complex 4	232					intronless viral mRNA export from host nucleus|mRNA 3'-end processing|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nuclear speck|transcription export complex	nucleotide binding|protein binding|RNA binding				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			GCTTTGAATTCCTGCCGGCAC	0.642													7	19					0	0	8.12818e-05	0	0
PCYT2	5833	broad.mit.edu	37	17	79864637	79864637	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr17:79864637G>A	uc002kcf.1	-	7	738	c.675C>T	c.(673-675)TTC>TTT	p.F225F	PCYT2_uc010wva.1_Silent_p.F193F|PCYT2_uc010wvb.1_Silent_p.F193F|PCYT2_uc002kce.1_Silent_p.F147F|PCYT2_uc002kcg.1_Silent_p.F254F|PCYT2_uc002kch.1_Silent_p.F243F|PCYT2_uc002kci.1_Silent_p.F184F|PCYT2_uc010dii.1_Silent_p.F225F|PCYT2_uc010wvc.1_Silent_p.F147F	NM_002861	NP_002852	Q99447	PCY2_HUMAN	phosphate cytidylyltransferase 2, ethanolamine	225	Catalytic 2 (Potential).				phospholipid biosynthetic process		ethanolamine-phosphate cytidylyltransferase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			AGAGGATACGGAACAGGTCGA	0.612													6	31					0	0	8.12818e-05	0	0
DSG2	1829	broad.mit.edu	37	18	29104710	29104710	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr18:29104710G>A	uc002kwu.3	+	8	1061	c.873G>A	c.(871-873)ACG>ACA	p.T291T		NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	291	Extracellular (Potential).|Cadherin 3.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			TAGAAGTTACGCGCATAAAAG	0.333													12	41					0	0	0.000151284	0	0
FAM59A	64762	broad.mit.edu	37	18	29867779	29867779	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr18:29867779C>T	uc002kxl.2	-	4	837	c.781G>A	c.(781-783)GAC>AAC	p.D261N	FAM59A_uc002kxk.1_Missense_Mutation_p.D261N	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	261	CABIT.									ovary(1)|skin(1)	2						AAGTGGAGGTCGTATGGGTTT	0.537													26	105					0	0	0.000339439	0	0
ASXL3	80816	broad.mit.edu	37	18	31324184	31324184	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr18:31324184G>A	uc010dmg.1	+	12	4427	c.4372G>A	c.(4372-4374)GGG>AGG	p.G1458R	ASXL3_uc002kxq.2_Missense_Mutation_p.G1165R	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1458					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GCAACCACCAGGGGGCTTTGC	0.493											OREG0024911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	35	98					0	0	0.000319135	0	0
NOL4	8715	broad.mit.edu	37	18	31463336	31463336	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr18:31463336G>A	uc010dmi.2	-	10	1824	c.1595C>T	c.(1594-1596)ACT>ATT	p.T532I	NOL4_uc010xbs.1_Missense_Mutation_p.T247I|NOL4_uc002kxr.3_Missense_Mutation_p.T304I|NOL4_uc010xbt.1_Missense_Mutation_p.T458I|NOL4_uc010dmh.2_Missense_Mutation_p.T394I|NOL4_uc010xbu.1_Missense_Mutation_p.T468I|NOL4_uc002kxt.3_Missense_Mutation_p.T430I	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	532						nucleolus	RNA binding			ovary(3)	3						TGTTGAGTAAGTGGCCTGGGT	0.493													18	65					0	0	0.000566183	0	0
DYM	54808	broad.mit.edu	37	18	46956726	46956726	+	Silent	SNP	T	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr18:46956726T>C	uc002ldi.1	-	2	404	c.39A>G	c.(37-39)AAA>AAG	p.K13K	DYM_uc010xdf.1_Silent_p.K13K	NM_017653	NP_060123	Q7RTS9	DYM_HUMAN	dymeclin	13						Golgi apparatus					0						AGTACTCATTTTTAGGAAGAT	0.398													29	94					0	0	0.000491102	0	0
CDH7	1005	broad.mit.edu	37	18	63526247	63526247	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr18:63526247G>A	uc002ljz.2	+	9	1784	c.1459G>A	c.(1459-1461)GAG>AAG	p.E487K	CDH7_uc002lka.2_Missense_Mutation_p.E487K|CDH7_uc002lkb.2_Missense_Mutation_p.E487K	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	487	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				CATGGACTATGAGACCACCGT	0.428													22	71					0	0	0.000295444	0	0
ZNF236	7776	broad.mit.edu	37	18	74611016	74611016	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr18:74611016C>T	uc002lmi.2	+	11	1924	c.1726C>T	c.(1726-1728)CGA>TGA	p.R576*	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	576	C2H2-type 13.				cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		CAAAAAATTTCGAACCTCAGG	0.383													20	74					0	0	0.000375601	0	0
GALR1	2587	broad.mit.edu	37	18	74963127	74963127	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr18:74963127G>A	uc002lms.3	+	1	1120	c.623G>A	c.(622-624)GGC>GAC	p.G208D		NM_001480	NP_001471	P47211	GALR1_HUMAN	galanin receptor 1	208	Helical; Name=5; (Potential).				digestion|negative regulation of adenylate cyclase activity	integral to membrane|plasma membrane	galanin receptor activity			lung(1)	1		Prostate(75;0.0865)|Esophageal squamous(42;0.129)|Melanoma(33;0.211)		OV - Ovarian serous cystadenocarcinoma(15;1.03e-06)|BRCA - Breast invasive adenocarcinoma(31;0.104)		TTCGTCTTCGGCTACCTGCTG	0.697													25	89					0	0	0.000184323	0	0
C19orf28	126321	broad.mit.edu	37	19	3542863	3542863	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:3542863G>A	uc002lxw.2	-	10	1703	c.1533C>T	c.(1531-1533)GCC>GCT	p.A511A	C19orf28_uc002lxx.2_Intron|C19orf28_uc010dtl.1_5'Flank|C19orf71_uc010xhm.1_Intron	NM_021731	NP_068377	Q6NUT3	CS028_HUMAN	hypothetical protein LOC126321 isoform a	Error:Variant_position_missing_in_Q6NUT3_after_alignment					transmembrane transport	integral to membrane				breast(1)|pancreas(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00251)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGCCAGGGGGGCTTCCCAGA	0.572													5	36					0	0	0.000602214	0	0
DENND1C	79958	broad.mit.edu	37	19	6468913	6468913	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:6468913G>A	uc002mfe.2	-	20	1551	c.1459C>T	c.(1459-1461)CCC>TCC	p.P487S	DENND1C_uc002mfb.2_Missense_Mutation_p.P37S|DENND1C_uc002mfc.2_Missense_Mutation_p.P37S|DENND1C_uc002mfd.2_Missense_Mutation_p.P37S|DENND1C_uc010xje.1_Missense_Mutation_p.P443S	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	487						clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						GAGCGGCTGGGGAGGGCTGGG	0.617													5	21					0	0	0.000602214	0	0
VAV1	7409	broad.mit.edu	37	19	6820742	6820742	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:6820742C>T	uc002mfu.1	+	2	331	c.234C>T	c.(232-234)TTC>TTT	p.F78F	VAV1_uc010xjh.1_Silent_p.F78F|VAV1_uc010dva.1_Silent_p.F78F|VAV1_uc002mfv.1_Silent_p.F23F	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	78	Leu-rich.|CH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						TTAGAACCTTCCTGTCCACCT	0.552													32	96					0	0	0.00058488	0	0
MUC16	94025	broad.mit.edu	37	19	9006662	9006662	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:9006662C>T	uc002mkp.2	-	44	39790	c.39586G>A	c.(39586-39588)GAG>AAG	p.E13196K	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.E13K|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13198	SEA 8.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGAACACTCTCCGTGATGTTG	0.527													25	125					0	0	0.000720815	0	0
MUC16	94025	broad.mit.edu	37	19	9046505	9046505	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:9046505G>A	uc002mkp.2	-	5	35330	c.35126C>T	c.(35125-35127)TCC>TTC	p.S11709F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11711	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACTACTATGGGAAAAACTGGA	0.512													12	81					0	0	0.00010058	0	0
MUC16	94025	broad.mit.edu	37	19	9085301	9085301	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:9085301C>T	uc002mkp.2	-	1	6718	c.6514G>A	c.(6514-6516)GCC>ACC	p.A2172T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2172	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCTGAAGAGGCTGTGCCTAAA	0.448													6	27					0	0	3.59834e-05	0	0
OR7G3	390883	broad.mit.edu	37	19	9236999	9236999	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:9236999G>A	uc010xkl.1	-	1	628	c.628C>T	c.(628-630)CCT>TCT	p.P210S		NM_001001958	NP_001001958	Q8NG95	OR7G3_HUMAN	olfactory receptor, family 7, subfamily G,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCAGAGAGAGGAACAACACCT	0.433													11	85					0	0	0.000673444	0	0
ZNF699	374879	broad.mit.edu	37	19	9407134	9407134	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:9407134A>C	uc002mlc.1	-	5	946	c.946T>G	c.(946-948)TTC>GTC	p.F316V		NM_198535	NP_940937	Q32M78	ZN699_HUMAN	zinc finger protein 699	316	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAACAACTGAAGGCCTTCCCA	0.423													8	61					0	0	0.000157383	0	0
ZNF561	93134	broad.mit.edu	37	19	9724727	9724727	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:9724727C>T	uc002mlu.2	-	5	499	c.294G>A	c.(292-294)TTG>TTA	p.L98L	ZNF561_uc010dwu.2_Silent_p.L29L|ZNF561_uc010xkr.1_Intron	NM_152289	NP_689502	Q8N587	ZN561_HUMAN	zinc finger protein 561	98	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TTTGATTCTTCAAAAAACCCT	0.323													20	84					0	0	0.000375601	0	0
FDX1L	112812	broad.mit.edu	37	19	10421604	10421604	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:10421604G>A	uc002mny.1	-	4	339	c.320C>T	c.(319-321)GCC>GTC	p.A107V	ZGLP1_uc002mnw.3_5'Flank|FDX1L_uc002mnx.1_RNA	NM_001031734	NP_001026904	Q6P4F2	ADXL_HUMAN	ferredoxin 1-like precursor	107	2Fe-2S ferredoxin-type.				electron transport chain|transport	mitochondrial matrix	2 iron, 2 sulfur cluster binding|electron carrier activity|metal ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(20;9.5e-10)|Epithelial(33;2.11e-06)|all cancers(31;5.06e-06)			GGCCAGGGAGGCTTCACAGGC	0.612													6	12					0	0	0.000274275	0	0
ZNF844	284391	broad.mit.edu	37	19	12187275	12187275	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:12187275G>C	uc002mtb.2	+	4	1483	c.1340G>C	c.(1339-1341)CGT>CCT	p.R447P	ZNF844_uc010dym.1_Missense_Mutation_p.R290P	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	447					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAGAGAAACCGTATGAGTGTA	0.433													3	71					0	0	6.4e-05	0	0
UNC13A	23025	broad.mit.edu	37	19	17760345	17760345	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:17760345C>T	uc002nhd.2	-	14	1755	c.1755G>A	c.(1753-1755)AGG>AGA	p.R585R		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	497					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						GGATAGGTTTCCTCTTGCGGA	0.572													23	61					0	0	0.000586117	0	0
ZNF536	9745	broad.mit.edu	37	19	30934830	30934830	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:30934830G>A	uc002nsu.1	+	2	499	c.361G>A	c.(361-363)GAG>AAG	p.E121K	ZNF536_uc010edd.1_Missense_Mutation_p.E121K	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	121					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GAGCGACATCGAGGACGACGC	0.642													11	18					0	0	6.40141e-05	0	0
FAM187B	148109	broad.mit.edu	37	19	35715879	35715879	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:35715879C>T	uc002nyk.1	-	2	1004	c.959G>A	c.(958-960)AGG>AAG	p.R320K		NM_152481	NP_689694	Q17R55	F187B_HUMAN	family with sequence similarity 187, member B	320	Extracellular (Potential).					integral to membrane				ovary(2)	2						CAGGGCCTTCCTTGCCTCCCG	0.677													6	34					0	0	8.12818e-05	0	0
CD22	933	broad.mit.edu	37	19	35823534	35823534	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:35823534T>C	uc010edt.2	+	3	196	c.119T>C	c.(118-120)GTC>GCC	p.V40A	CD22_uc010xst.1_5'UTR|CD22_uc010edu.2_Missense_Mutation_p.V40A|CD22_uc010edv.2_Missense_Mutation_p.V40A|CD22_uc002nzb.3_Missense_Mutation_p.V40A	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	40	Extracellular (Potential).|Ig-like V-type.				cell adhesion		protein binding|sugar binding	p.V40V(1)		ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	GGGGCCTGCGTCTGGATCCCC	0.502													10	71					0	0	0.000673444	0	0
TMEM149	79713	broad.mit.edu	37	19	36230277	36230278	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:36230277_36230278GG>AA	uc002obc.2	-	5	1072_1073	c.971_972CC>TT	c.(970-972)TCC>TTT	p.S324F	TMEM149_uc002obb.2_Missense_Mutation_p.S136F|TMEM149_uc002obd.3_Missense_Mutation_p.S324F|TMEM149_uc010xsy.1_RNA|TMEM149_uc010eej.2_Missense_Mutation_p.S404F	NM_024660	NP_078936	Q9H665	IGFR1_HUMAN	transmembrane protein 149 precursor	324	Cytoplasmic (Potential).					integral to membrane|plasma membrane	protein binding|receptor activity				0	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GCTGGCCCAGGGAGGCAGAGGG	0.644													3	4					0	0	6.4e-05	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36273350	36273350	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:36273350C>T	uc002obr.1	+	13	1246	c.1161C>T	c.(1159-1161)TCC>TCT	p.S387S	ARHGAP33_uc002obs.1_Silent_p.S387S|ARHGAP33_uc002obt.1_Silent_p.S251S|ARHGAP33_uc010eel.2_5'UTR|ARHGAP33_uc002obv.1_5'Flank	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	387	Rho-GAP.				cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						GCGTGTCCTCCCTCTGCAAGC	0.597													9	52					0	0	0.000274275	0	0
MAP3K10	4294	broad.mit.edu	37	19	40721043	40721043	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:40721043C>T	uc002ona.2	+	10	2997	c.2709C>T	c.(2707-2709)TCC>TCT	p.S903S	MAP3K10_uc002onb.2_Silent_p.S292S	NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	903					activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						AACTGGTCTCCTTCGGCCGGA	0.701													6	7					0	0	8.12818e-05	0	0
ATP1A3	478	broad.mit.edu	37	19	42482827	42482827	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:42482827C>T	uc002osg.2	-	12	1715	c.1561G>A	c.(1561-1563)GAC>AAC	p.D521N	ATP1A3_uc010xwf.1_Missense_Mutation_p.D532N|ATP1A3_uc010xwg.1_Missense_Mutation_p.D491N|ATP1A3_uc010xwh.1_Missense_Mutation_p.D534N|ATP1A3_uc002osh.2_Missense_Mutation_p.D521N	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	521	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						ATTTCCTCGTCCAGAGGCTGC	0.657													12	54					0	0	0.00010058	0	0
ZNF114	163071	broad.mit.edu	37	19	48789581	48789582	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:48789581_48789582GG>AA	uc002pil.1	+	6	1197_1198	c.700_701GG>AA	c.(700-702)GGA>AAA	p.G234K	ZNF114_uc010elv.1_Missense_Mutation_p.G234K|ZNF114_uc002pim.1_Missense_Mutation_p.G234K|ZNF114_uc002pin.2_Missense_Mutation_p.G200K	NM_153608	NP_705836	Q8NC26	ZN114_HUMAN	zinc finger protein 114	234					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_epithelial(76;8.01e-05)|all_lung(116;0.000112)|Lung NSC(112;0.000192)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;7.56e-05)|all cancers(93;0.000113)|Epithelial(262;0.00962)|GBM - Glioblastoma multiforme(486;0.0153)		CCGTGAAGACGGATCCCTTAGG	0.47													27	67					0	0	6.4e-05	0	0
HRC	3270	broad.mit.edu	37	19	49657463	49657463	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:49657463C>T	uc002pmv.2	-	1	1219	c.1032G>A	c.(1030-1032)AGG>AGA	p.R344R		NM_002152	NP_002143	P23327	SRCH_HUMAN	histidine rich calcium binding protein	344	1-4.|4 X tandem repeats, acidic.				muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			ovary(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.01e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.00019)|GBM - Glioblastoma multiforme(486;0.00279)|Epithelial(262;0.00622)		GGCCTTGGTGCCTGTGGTCAG	0.557													20	45					0	0	0.000132079	0	0
ZNF28	7576	broad.mit.edu	37	19	53303978	53303978	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:53303978G>A	uc002qad.2	-	4	1240	c.1120C>T	c.(1120-1122)CGT>TGT	p.R374C	ZNF28_uc002qac.2_Missense_Mutation_p.R321C|ZNF28_uc010eqe.2_Missense_Mutation_p.R320C	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	374	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		TGAAGCCTACGATGGCGTGCA	0.383													13	85					0	0	0.000151284	0	0
ZNF813	126017	broad.mit.edu	37	19	53994678	53994678	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:53994678C>T	uc002qbu.2	+	4	1320	c.1192C>T	c.(1192-1194)CTT>TTT	p.L398F	ZNF813_uc010eqq.1_Intron	NM_001004301	NP_001004301	Q6ZN06	ZN813_HUMAN	zinc finger protein 813	398	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00619)		GGAGTTAACCCTTAAATGCCA	0.413													9	74					0	0	0.000274275	0	0
MIR525	574470	broad.mit.edu	37	19	54200848	54200848	+	RNA	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:54200848C>T	hsa-mir-525|MI0003152	+			c.62C>T			MIR523_hsa-mir-523|MI0003153_5'Flank|MIR518F_hsa-mir-518f|MI0003154_5'Flank																	0						GAAGGCGCTTCCCTTTAGAGC	0.423													13	38					0	0	0.000151284	0	0
LILRA3	11026	broad.mit.edu	37	19	54803599	54803599	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:54803599C>T	uc002qfd.2	-	3	290	c.225G>A	c.(223-225)CAG>CAA	p.Q75Q	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Silent_p.Q75Q	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	75	Ig-like C2-type 1.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TCACAAGCTCCTGTGGGATCC	0.542													18	77					0	0	0.000132079	0	0
ROCK2	9475	broad.mit.edu	37	2	11355166	11355166	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:11355166G>A	uc002rbd.1	-	16	2185	c.1736C>T	c.(1735-1737)GCC>GTC	p.A579V		NM_004850	NP_004841	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein	579	Potential.|Interaction with PPP1R12A.				axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			stomach(2)|skin(2)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		CCTTAACCGGGCTGCAGTATC	0.413													11	55					0	0	0.000673444	0	0
APOB	338	broad.mit.edu	37	2	21230565	21230565	+	Missense_Mutation	SNP	G	A	A	rs146377316		TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:21230565G>A	uc002red.2	-	26	9303	c.9175C>T	c.(9175-9177)CGT>TGT	p.R3059C		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3059					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity	p.R3059C(1)		ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AATGGAAAACGAACTTTCAAA	0.403													226	363					0	0	0.000781405	0	0
CAPN13	92291	broad.mit.edu	37	2	30966411	30966411	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:30966411G>A	uc002rnn.2	-	12	1459	c.1283C>T	c.(1282-1284)TCC>TTC	p.S428F	CAPN13_uc002rnm.2_RNA|CAPN13_uc002rno.2_5'UTR	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	428					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					TCTGAACGAGGAAAAAAACAC	0.473													32	66					0	0	0.000409698	0	0
BIRC6	57448	broad.mit.edu	37	2	32654243	32654243	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:32654243G>A	uc010ezu.2	+	11	3036	c.2902G>A	c.(2902-2904)GGA>AGA	p.G968R		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	968					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					CCAAATTGGAGGAACCTGTGA	0.333													5	21					0	0	8.12818e-05	0	0
DHX57	90957	broad.mit.edu	37	2	39046275	39046275	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:39046275C>T	uc002rrf.2	-	18	3402	c.3303G>A	c.(3301-3303)TGG>TGA	p.W1101*	DHX57_uc002rrd.3_Nonsense_Mutation_p.W485*|DHX57_uc002rre.2_Nonsense_Mutation_p.W534*	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	1101							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				CTTTTTTATCCCAGGGAGATA	0.274													11	38					0	0	6.40141e-05	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43933532	43933533	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:43933532_43933533CC>AA	uc010yny.1	+	10	1881_1882	c.1798_1799CC>AA	c.(1798-1800)CCA>AAA	p.P600K	PLEKHH2_uc002rte.3_Missense_Mutation_p.P600K|PLEKHH2_uc002rtf.3_Missense_Mutation_p.P599K	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	600						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CATGACCACCCCAGTGTATACA	0.361													18	589					0	0	6.4e-05	0	0
PPM1B	5495	broad.mit.edu	37	2	44428836	44428837	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:44428836_44428837CC>AA	uc002rtt.2	+	2	926_927	c.498_499CC>AA	c.(496-501)ACCCAG>ACAAAG	p.Q167K	PPM1B_uc002rts.2_Missense_Mutation_p.Q167K|PPM1B_uc002rtu.2_Missense_Mutation_p.Q167K|PPM1B_uc002rtv.2_Intron|PPM1B_uc002rtw.2_Missense_Mutation_p.Q167K|PPM1B_uc002rtx.2_Missense_Mutation_p.Q167K	NM_002706	NP_002697	O75688	PPM1B_HUMAN	protein phosphatase 1B isoform 1	167					protein dephosphorylation	protein serine/threonine phosphatase complex	magnesium ion binding|manganese ion binding|protein binding|protein serine/threonine phosphatase activity			kidney(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GCTTTTCTACCCAGGATCACAA	0.436													12	653					0	0	6.4e-05	0	0
MSH6	2956	broad.mit.edu	37	2	48026038	48026039	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:48026038_48026039GG>AA	uc002rwd.3	+	4	1068_1069	c.916_917GG>AA	c.(916-918)GGA>AAA	p.G306K	MSH6_uc002rwc.2_Missense_Mutation_p.G306K|MSH6_uc010fbj.2_Missense_Mutation_p.G4K|MSH6_uc010yoi.1_Missense_Mutation_p.G176K|MSH6_uc010yoj.1_Missense_Mutation_p.G4K	NM_000179	NP_000170	P52701	MSH6_HUMAN	mutS homolog 6	306					determination of adult lifespan|DNA damage response, signal transduction resulting in induction of apoptosis|isotype switching|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|response to UV|somatic hypermutation of immunoglobulin genes	MutSalpha complex	ATP binding|DNA-dependent ATPase activity|protein binding			large_intestine(53)|central_nervous_system(28)|endometrium(28)|stomach(22)|haematopoietic_and_lymphoid_tissue(9)|lung(7)|skin(6)|urinary_tract(5)|breast(5)|ovary(3)|thyroid(1)|upper_aerodigestive_tract(1)	168		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AATGGTGACTGGAAATGGCTCT	0.465			Mis|N|F|S		colorectal	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				54	195					0	0	6.4e-05	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48906503	48906503	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:48906503C>T	uc010yol.1	+	8	3377	c.3330C>T	c.(3328-3330)TTC>TTT	p.F1110F	STON1-GTF2A1L_uc002rwp.1_Silent_p.F1157F|GTF2A1L_uc002rws.1_Silent_p.F453F|GTF2A1L_uc010yom.1_Silent_p.F419F|GTF2A1L_uc002rwt.2_Intron	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	1110					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AATGGAAATTCTATTTGAAAG	0.368													34	70					0	0	0.000270559	0	0
LHCGR	3973	broad.mit.edu	37	2	48914908	48914908	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:48914908G>A	uc002rwu.3	-	11	2098	c.2028C>T	c.(2026-2028)TCC>TCT	p.S676S	GTF2A1L_uc002rwt.2_Intron	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	676	Cytoplasmic (Potential).				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	ACTTCAAGGTGGATTGAGAAG	0.418									Familial_Male-Limited_Precocious_Puberty				47	81					0	0	0.000781405	0	0
RTN4	57142	broad.mit.edu	37	2	55252222	55252222	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:55252222C>T	uc002rye.2	-	3	3311	c.3013G>A	c.(3013-3015)GTT>ATT	p.V1005I	RTN4_uc002ryd.2_Missense_Mutation_p.V799I|RTN4_uc002ryf.2_Intron|RTN4_uc002ryg.2_Intron	NM_020532	NP_065393	Q9NQC3	RTN4_HUMAN	reticulon 4 isoform A	1005	Cytoplasmic (Potential).|Reticulon.				apoptosis|axonal fasciculation|cerebral cortex radial glia guided migration|endoplasmic reticulum tubular network organization|negative regulation of anti-apoptosis|negative regulation of axon extension|nerve growth factor receptor signaling pathway|regulation of apoptosis|regulation of branching morphogenesis of a nerve|regulation of cell migration	integral to endoplasmic reticulum membrane|nuclear envelope|plasma membrane	protein binding			ovary(2)|large_intestine(1)	3						ATTGGATTACCTGAAGTTTTA	0.353													23	49					0	0	0.00047179	0	0
PPP3R1	5534	broad.mit.edu	37	2	68413777	68413777	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:68413777G>A	uc002sei.1	-	5	680	c.288C>T	c.(286-288)TTC>TTT	p.F96F		NM_000945	NP_000936	P63098	CANB1_HUMAN	protein phosphatase 3, regulatory subunit B,	96	EF-hand 3.				activation of pro-apoptotic gene products|induction of apoptosis by intracellular signals	calcineurin complex|cytosol	calcium ion binding|calcium-dependent protein serine/threonine phosphatase activity|calmodulin binding				0					Pimecrolimus(DB00337)	CATAGATACGGAAAGCAACTA	0.343													6	24					0	0	8.12818e-05	0	0
ALMS1	7840	broad.mit.edu	37	2	73762047	73762047	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:73762047C>T	uc002sje.1	+	14	9992	c.9881C>T	c.(9880-9882)TCA>TTA	p.S3294L	ALMS1_uc002sjf.1_Missense_Mutation_p.S3250L|ALMS1_uc002sjg.2_Missense_Mutation_p.S2680L|ALMS1_uc002sjh.1_Missense_Mutation_p.S2680L|ALMS1_uc010fev.1_Missense_Mutation_p.S109L	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3292					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						GATTCCAAATCAGATACCACC	0.358													46	156					0	0	0.000781405	0	0
TET3	200424	broad.mit.edu	37	2	74328040	74328040	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:74328040C>T	uc002skb.3	+	9	3720	c.3720C>T	c.(3718-3720)CTC>CTT	p.L1240L		NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	1240							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CCCCCCTACTCCACTCAGTGT	0.632													4	9					0	0	0.000602214	0	0
EIF2AK3	9451	broad.mit.edu	37	2	88885548	88885549	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:88885548_88885549CC>AA	uc002stc.3	-	9	1662_1663	c.1460_1461GG>TT	c.(1459-1461)AGG>ATT	p.R487I		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	487	Lumenal (Potential).				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						TGTTCCTCTCCCTCTTGTAGTA	0.337													14	709					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	2	90199187	90199187	+	RNA	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:90199187C>T	uc010fhm.2	+	24		c.3318C>T								Parts of antibodies, mostly variable regions.																		CTAACAGTTTCCCTCCCACAG	0.532													37	96					0	0	0.000781405	0	0
ADRA2B	151	broad.mit.edu	37	2	96781056	96781056	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:96781056G>A	uc002svi.2	-	1	833	c.833C>T	c.(832-834)CCC>CTC	p.P278L		NM_000682	NP_000673	P18089	ADA2B_HUMAN	alpha-2B-adrenergic receptor	278	Cytoplasmic (By similarity).				activation of MAPK activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cell-cell signaling|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|negative regulation of epinephrine secretion|negative regulation of norepinephrine secretion|positive regulation of neuron differentiation	integral to plasma membrane	alpha2-adrenergic receptor activity|epinephrine binding|protein binding			ovary(2)|lung(1)	3					Bethanidine(DB00217)|Brimonidine(DB00484)|Debrisoquin(DB04840)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Lofexidine(DB04948)|Norepinephrine(DB00368)|Yohimbine(DB01392)	GCCTGAGTTGGGAAGGGCAGC	0.537													6	8					0	0	3.59834e-05	0	0
ACOXL	55289	broad.mit.edu	37	2	111666434	111666435	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:111666434_111666435GG>AA	uc002tgr.3	+	11	1081_1082	c.857_858GG>AA	c.(856-858)CGG>CAA	p.R286Q	ACOXL_uc010fkc.2_Missense_Mutation_p.R286Q|ACOXL_uc010yxk.1_Missense_Mutation_p.R286Q	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	286					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						CAGACCCTGCGGCTGATGCCCC	0.545													35	52					0	0	6.4e-05	0	0
ZC3H6	376940	broad.mit.edu	37	2	113069500	113069500	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:113069500G>A	uc002thq.1	+	5	1127	c.733G>A	c.(733-735)GAT>AAT	p.D245N		NM_198581	NP_940983	P61129	ZC3H6_HUMAN	zinc finger CCCH-type domain containing 6	245							nucleic acid binding|zinc ion binding			ovary(3)|central_nervous_system(1)	4						TTCAGTATCGGATGACTTTCA	0.373													4	35					0	0	0.00024832	0	0
NEB	4703	broad.mit.edu	37	2	152471030	152471030	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:152471030C>T	uc010fnx.2	-	73	10823	c.10632G>A	c.(10630-10632)CCG>CCA	p.P3544P		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3544	Nebulin 97.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ACATCATCTTCGGGTCATCCT	0.468													62	161					0	0	0.000781405	0	0
CACNB4	785	broad.mit.edu	37	2	152695707	152695708	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:152695707_152695708GG>AA	uc002tya.2	-	14	1556_1557	c.1488_1489CC>TT	c.(1486-1491)TACCAG>TATTAG	p.Q497*	CACNB4_uc002txy.2_Nonsense_Mutation_p.Q463*|CACNB4_uc002txz.2_Nonsense_Mutation_p.Q479*|CACNB4_uc010fnz.2_Nonsense_Mutation_p.Q435*	NM_000726	NP_000717	O00305	CACB4_HUMAN	calcium channel, voltage-dependent, beta 4	497					axon guidance|membrane depolarization|synaptic transmission	cytosol|internal side of plasma membrane|plasma membrane|synapse|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.156)	Verapamil(DB00661)	TAAGTGTCCTGGTATGAGTCAG	0.46													12	55					0	0	6.4e-05	0	0
GALNT13	114805	broad.mit.edu	37	2	155099411	155099411	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:155099411G>A	uc002tyr.3	+	6	1246	c.679G>A	c.(679-681)GAA>AAA	p.E227K	GALNT13_uc002tyt.3_Missense_Mutation_p.E227K|GALNT13_uc010foc.1_Missense_Mutation_p.E46K|GALNT13_uc010fod.2_5'Flank	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	227	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						AAGAATAAAGGAAGACAGGTA	0.448													6	17					0	0	0.000157383	0	0
CCDC148	130940	broad.mit.edu	37	2	159166112	159166112	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:159166112T>C	uc002tzq.2	-	9	1206	c.943A>G	c.(943-945)ATA>GTA	p.I315V	CCDC148_uc002tzr.2_Missense_Mutation_p.I163V|CCDC148_uc010foh.2_Missense_Mutation_p.I28V|CCDC148_uc010foi.1_Missense_Mutation_p.I262V|CCDC148_uc010foj.1_Missense_Mutation_p.I163V|CCDC148_uc010fok.1_Missense_Mutation_p.I229V	NM_138803	NP_620158	Q8NFR7	CC148_HUMAN	coiled-coil domain containing 148	315										ovary(2)	2						TGCTGCTCTATAGCAAAGCGA	0.353													18	60					0	0	0.000175454	0	0
SCN9A	6335	broad.mit.edu	37	2	167108394	167108394	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:167108394C>T	uc010fpl.2	-	18	3661	c.3320G>A	c.(3319-3321)AGA>AAA	p.R1107K	uc002udp.2_RNA	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1118						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CCGGTTTAATCTCTAGAAAGG	0.408													7	29					0	0	8.12818e-05	0	0
CDCA7	83879	broad.mit.edu	37	2	174228117	174228117	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:174228117C>T	uc002uid.1	+	3	442	c.311C>T	c.(310-312)TCC>TTC	p.S104F	CDCA7_uc002uic.1_Missense_Mutation_p.S183F|CDCA7_uc010zej.1_Missense_Mutation_p.S139F|CDCA7_uc010zek.1_Missense_Mutation_p.S62F	NM_145810	NP_665809	Q9BWT1	CDCA7_HUMAN	cell division cycle associated 7 isoform 2	104					regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.116)			GATTCCAACTCCGATTCAGAA	0.433													17	78					0	0	0.000422831	0	0
HOXD8	3234	broad.mit.edu	37	2	176996253	176996253	+	Silent	SNP	C	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:176996253C>A	uc002uko.2	+	2	1404	c.786C>A	c.(784-786)CCC>CCA	p.P262P	uc002ukm.1_5'Flank|HOXD8_uc002ukn.2_Silent_p.P78P|HOXD8_uc002ukp.2_Silent_p.P261P	NM_019558	NP_062458	P13378	HXD8_HUMAN	homeobox D8	262					anterior/posterior axis specification, embryo	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.195)	Colorectal(32;0.0224)|READ - Rectum adenocarcinoma(9;0.0556)		ACAAATTTCCCGTTTCCCGGC	0.483													5	108					0.000602214	0.00663565	0.000602214	1	0
TTN	7273	broad.mit.edu	37	2	179498794	179498794	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:179498794G>A	uc010zfg.1	-	180	34952	c.34728C>T	c.(34726-34728)TTC>TTT	p.F11576F	TTN_uc010zfh.1_Silent_p.F5271F|TTN_uc010zfi.1_Silent_p.F5204F|TTN_uc010zfj.1_Silent_p.F5079F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12503							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAGGTGACATGAATTTCAGTC	0.358													19	59					0	0	0.00074312	0	0
TTN	7273	broad.mit.edu	37	2	179585274	179585274	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:179585274G>A	uc010zfg.1	-	77	19707	c.19483C>T	c.(19483-19485)CGA>TGA	p.R6495*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.R3156*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7422							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACCTGCTTTCGATCTTTAACC	0.393													9	29					0	0	0.000673444	0	0
TTN	7273	broad.mit.edu	37	2	179605466	179605466	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:179605466C>T	uc010zfh.1	-	46	12205	c.11981G>A	c.(11980-11982)GGT>GAT	p.G3994D	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.G3927D|TTN_uc010zfj.1_Missense_Mutation_p.G3802D|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATTAGAATACCTTCTTTGGA	0.428													29	98					0	0	0.000147802	0	0
TTN	7273	broad.mit.edu	37	2	179636195	179636195	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:179636195C>T	uc010zfg.1	-	34	8083	c.7859G>A	c.(7858-7860)GGG>GAG	p.G2620E	TTN_uc010zfh.1_Missense_Mutation_p.G2574E|TTN_uc010zfi.1_Missense_Mutation_p.G2574E|TTN_uc010zfj.1_Missense_Mutation_p.G2574E|TTN_uc002unb.2_Missense_Mutation_p.G2620E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2620							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGAGATGGCCCCACCTTTGGA	0.408													15	68					0	0	0.000958276	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187693133	187693133	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:187693133G>A	uc002upu.1	-	9	1520	c.1480C>T	c.(1480-1482)CCC>TCC	p.P494S		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	494					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			AGATACCTGGGAAAATGTTGG	0.318													14	24					0	0	0.000422831	0	0
STAT4	6775	broad.mit.edu	37	2	191898252	191898252	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:191898252C>T	uc002usm.1	-	20	2070	c.1816G>A	c.(1816-1818)GGA>AGA	p.G606R	STAT4_uc002usn.1_Missense_Mutation_p.G606R|STAT4_uc010zgk.1_Missense_Mutation_p.G451R|STAT4_uc002uso.2_Missense_Mutation_p.G606R	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	606	SH2.				JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			AAAGTTATTCCTCCGAGATGG	0.378													22	47					0	0	0.000229342	0	0
DNAH7	56171	broad.mit.edu	37	2	196682520	196682520	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:196682520C>T	uc002utj.3	-	50	9426	c.9325G>A	c.(9325-9327)GGA>AGA	p.G3109R		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3109	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCTTGCATTCCCTCAGGGGTT	0.338													12	35					0	0	0.000151284	0	0
ALS2CR11	151254	broad.mit.edu	37	2	202483646	202483646	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:202483646C>T	uc002uye.2	-	1	256	c.208G>A	c.(208-210)GGC>AGC	p.G70S	ALS2CR11_uc002uyf.2_Missense_Mutation_p.G70S|ALS2CR11_uc010fti.2_Missense_Mutation_p.G70S	NM_152525	NP_689738	Q53TS8	AL2SA_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	70										large_intestine(1)|ovary(1)|skin(1)	3						TGCCCGGTGCCCTCCTGGTTC	0.637													11	23					0	0	6.40141e-05	0	0
NBEAL1	65065	broad.mit.edu	37	2	204000871	204000872	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:204000871_204000872CC>AA	uc002uzt.3	+	27	4531_4532	c.4198_4199CC>AA	c.(4198-4200)CCA>AAA	p.P1400K	NBEAL1_uc002uzs.3_Missense_Mutation_p.P110K	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	1400							binding			ovary(1)|skin(1)	2						CACACCATCCCCAGTAGAGTCT	0.426													13	612					0	0	6.4e-05	0	0
CPO	130749	broad.mit.edu	37	2	207814428	207814428	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:207814428C>T	uc002vby.2	+	2	202	c.156C>T	c.(154-156)CCC>CCT	p.P52P		NM_173077	NP_775100	Q8IVL8	CBPO_HUMAN	carboxypeptidase O precursor	52					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				LUSC - Lung squamous cell carcinoma(261;0.0744)|Epithelial(149;0.0807)|Lung(261;0.142)		TATACCACCCCATGGGAGAGG	0.468													18	37					0	0	0.000958276	0	0
SPAG16	79582	broad.mit.edu	37	2	214354699	214354699	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:214354699C>T	uc002veq.2	+	10	1047	c.955C>T	c.(955-957)CCC>TCC	p.P319S	SPAG16_uc010fuz.1_Missense_Mutation_p.P170S|SPAG16_uc002ver.2_Missense_Mutation_p.P265S|SPAG16_uc010zjk.1_Missense_Mutation_p.P225S	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	319					cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		TTCAGAATTTCCCATAGATAT	0.308													20	100					0	0	0.000375601	0	0
SMARCAL1	50485	broad.mit.edu	37	2	217315672	217315672	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:217315672C>T	uc002vgc.3	+	12	2285	c.1955C>T	c.(1954-1956)TCC>TTC	p.S652F	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Missense_Mutation_p.S652F|SMARCAL1_uc010fvg.2_Missense_Mutation_p.S630F	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	652					chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		GACGTCCTTTCCCAGCTGCCT	0.607									Schimke_Immuno-Osseous_Dysplasia				13	45					0	0	0.000151284	0	0
SPEG	10290	broad.mit.edu	37	2	220356953	220356953	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:220356953C>T	uc010fwg.2	+	40	9582	c.9582C>T	c.(9580-9582)TTC>TTT	p.F3194F		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	3194	Protein kinase 2.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CCACCCTCTTCTTGCGAAAGG	0.602													20	36					0	0	0.000375601	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881249	228881249	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:228881249C>T	uc002vpq.2	-	7	4368	c.4321G>A	c.(4321-4323)GGG>AGG	p.G1441R	SPHKAP_uc002vpp.2_Missense_Mutation_p.G1441R|SPHKAP_uc010zlx.1_Missense_Mutation_p.G1441R	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1441						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TCAGGTTCCCCAGCACAGGCT	0.498													28	42					0	0	0.000184323	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884529	228884529	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:228884529G>A	uc002vpq.2	-	7	1088	c.1041C>T	c.(1039-1041)TCC>TCT	p.S347S	SPHKAP_uc002vpp.2_Silent_p.S347S|SPHKAP_uc010zlx.1_Silent_p.S347S	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	347						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TATCCATCATGGAGAAATAAG	0.423													40	83					0	0	0.000270559	0	0
UGT1A1	54658	broad.mit.edu	37	2	234669099	234669099	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:234669099G>A	uc002vvb.2	+	1	181	c.166G>A	c.(166-168)GAA>AAA	p.E56K	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron|UGT1A9_uc002vva.2_Intron|UGT1A1_uc010znc.1_Missense_Mutation_p.E56K	NM_000463	NP_000454	P22309	UD11_HUMAN	UDP glycosyltransferase 1 family, polypeptide A1	56					bilirubin conjugation|digestion|estrogen metabolic process|flavone metabolic process|heme catabolic process	endoplasmic reticulum membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding|steroid binding			central_nervous_system(1)|skin(1)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;4.1e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000435)|Lung(119;0.00211)|LUSC - Lung squamous cell carcinoma(224;0.0054)	Abacavir(DB01048)|Adenine(DB00173)|Diclofenac(DB00586)|Estradiol(DB00783)|Ezetimibe(DB00973)|Irinotecan(DB00762)|Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|Propofol(DB00818)|Rifampin(DB01045)|Troglitazone(DB00197)	GAGGGGACATGAAATAGTTGT	0.537													30	43					0	0	0.000227799	0	0
KIF1A	547	broad.mit.edu	37	2	241728654	241728654	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:241728654G>A	uc002vzy.2	-	3	328	c.182C>T	c.(181-183)TCA>TTA	p.S61L	KIF1A_uc010fzk.2_Missense_Mutation_p.S61L|KIF1A_uc002vzz.1_Missense_Mutation_p.S61L	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	61	Kinesin-motor.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CCGGCTTACTGAGGTGTGCGA	0.602													15	30					0	0	0.000422831	0	0
ATRN	8455	broad.mit.edu	37	20	3543973	3543973	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:3543973C>T	uc002wim.2	+	10	1839	c.1749C>T	c.(1747-1749)GCC>GCT	p.A583A	ATRN_uc002wil.2_Silent_p.A583A	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	583	Extracellular (Potential).|Kelch 5.				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						GCCATGGCGCCAAATGCTTCT	0.428													36	100					0	0	0.000191422	0	0
PCNA	5111	broad.mit.edu	37	20	5099424	5099424	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:5099424C>T	uc002wlp.2	-	2	513	c.310G>A	c.(310-312)GAA>AAA	p.E104K	PCNA_uc002wlq.2_Missense_Mutation_p.E104K|PCNA_uc010zqs.1_Missense_Mutation_p.E104K	NM_182649	NP_872590	P12004	PCNA_HUMAN	proliferating cell nuclear antigen	104					cell proliferation|DNA strand elongation involved in DNA replication|mismatch repair|nucleotide-excision repair, DNA gap filling|phosphatidylinositol-mediated signaling|positive regulation of deoxyribonuclease activity|regulation of DNA replication|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair|translesion synthesis	cytoplasm|DNA replication factor C complex|microtubule cytoskeleton|nuclear replication fork|nucleoplasm|PCNA complex|PCNA-p21 complex	dinucleotide insertion or deletion binding|DNA polymerase processivity factor activity|MutLalpha complex binding|purine-specific mismatch base pair DNA N-glycosylase activity			lung(1)	1						CTTGGTGCTTCAAATACTAGC	0.413								DNA_polymerases_(catalytic_subunits)					78	198					0	0	0.000781405	0	0
FRG1B	284802	broad.mit.edu	37	20	29628236	29628236	+	Missense_Mutation	SNP	G	C	C	rs145412486	by1000genomes	TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:29628236G>C	uc010ztl.1	+	3	180	c.148G>C	c.(148-150)GCT>CCT	p.A50P	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.A2P					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGGGAAAATGGCTTTGTTGGC	0.333													5	102					0	0	8.12818e-05	0	0
TM9SF4	9777	broad.mit.edu	37	20	30730862	30730862	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:30730862C>T	uc002wxj.2	+	6	841	c.606C>T	c.(604-606)TAC>TAT	p.Y202Y	TM9SF4_uc010ztr.1_Silent_p.Y128Y|TM9SF4_uc010zts.1_Silent_p.Y109Y|TM9SF4_uc002wxk.2_Silent_p.Y185Y|TM9SF4_uc010gdz.2_Silent_p.Y109Y	NM_014742	NP_055557	Q92544	TM9S4_HUMAN	transmembrane 9 superfamily protein member 4	202						integral to membrane				central_nervous_system(1)|pancreas(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			AGCACACGTACCGTGTCGTCC	0.582													20	36					0	0	0.000175454	0	0
ZNF341	84905	broad.mit.edu	37	20	32344993	32344993	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:32344993C>A	uc002wzy.2	+	6	801	c.781C>A	c.(781-783)CCC>ACC	p.P261T	ZNF341_uc002wzx.2_Missense_Mutation_p.P261T|ZNF341_uc010geq.2_Missense_Mutation_p.P171T|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	261					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						ATATCCCACCCCCACAGTGTA	0.612													43	157					1.23713e-20	1.39513e-19	0.000781405	1	0
EDEM2	55741	broad.mit.edu	37	20	33722705	33722705	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:33722705G>A	uc002xbo.2	-	6	638	c.538C>T	c.(538-540)CAT>TAT	p.H180Y	EDEM2_uc010zuv.1_Missense_Mutation_p.H139Y|EDEM2_uc010zus.1_5'UTR|EDEM2_uc002xbq.2_Missense_Mutation_p.H143Y|EDEM2_uc010zut.1_Missense_Mutation_p.H139Y|EDEM2_uc002xbp.2_Missense_Mutation_p.H28Y|EDEM2_uc002xbn.2_Missense_Mutation_p.H28Y|EDEM2_uc002xbr.2_RNA|EDEM2_uc010zuu.1_Intron	NM_018217	NP_060687	Q9BV94	EDEM2_HUMAN	ER degradation enhancer, mannosidase alpha-like	180					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00936)			TTCACGCCATGAAGTAAGTTC	0.537													15	53					0	0	0.000566183	0	0
CEP250	11190	broad.mit.edu	37	20	34090779	34090779	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:34090779C>T	uc002xcm.2	+	31	5253	c.4582C>T	c.(4582-4584)CTT>TTT	p.L1528F	CEP250_uc010zve.1_Missense_Mutation_p.L896F	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	1528	Gln/Glu-rich.|Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			GGAGCATCAGCTTCTAGAACT	0.532													19	33					0	0	0.00074312	0	0
PTPRT	11122	broad.mit.edu	37	20	40944418	40944418	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:40944418A>C	uc002xkg.2	-	12	2268	c.2084T>G	c.(2083-2085)CTC>CGC	p.L695R	PTPRT_uc010ggj.2_Missense_Mutation_p.L695R	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	695	Extracellular (Potential).|Fibronectin type-III 4.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CAGGGGAGAGAGAGGAGGGTT	0.498													9	82					0	0	0.000442599	0	0
PTPRT	11122	broad.mit.edu	37	20	41076902	41076902	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:41076902C>T	uc002xkg.2	-	9	1702	c.1518G>A	c.(1516-1518)TGG>TGA	p.W506*	PTPRT_uc010ggj.2_Nonsense_Mutation_p.W506*	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	506	Extracellular (Potential).|Fibronectin type-III 3.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TGGGAGGTTTCCACTGGATGT	0.483													40	154					0	0	0.000781405	0	0
PTPRT	11122	broad.mit.edu	37	20	41419967	41419967	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:41419967C>T	uc002xkg.2	-	3	538	c.354G>A	c.(352-354)GGG>GGA	p.G118G	PTPRT_uc010ggj.2_Silent_p.G118G	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	118	Extracellular (Potential).|MAM.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CGTTCAAGGCCCCTGGGCTGG	0.597													15	53					0	0	0.000219431	0	0
GDAP1L1	78997	broad.mit.edu	37	20	42887216	42887216	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:42887216G>A	uc002xlq.2	+	3	583	c.516G>A	c.(514-516)ATG>ATA	p.M172I	GDAP1L1_uc002xlp.1_Missense_Mutation_p.M172I|GDAP1L1_uc010zwl.1_Missense_Mutation_p.M191I|GDAP1L1_uc010zwm.1_Intron|GDAP1L1_uc010zwn.1_Intron	NM_024034	NP_076939	Q96MZ0	GD1L1_HUMAN	ganglioside-induced differentiation-associated	172										large_intestine(1)	1		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CCGACTCCATGATCCCCAAGT	0.637													7	15					0	0	0.000442599	0	0
SEMG1	6406	broad.mit.edu	37	20	43836807	43836807	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:43836807C>T	uc002xni.2	+	2	926	c.869C>T	c.(868-870)TCT>TTT	p.S290F	SEMG1_uc002xnj.2_Intron|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Missense_Mutation_p.S290F	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	290	58 AA repeat 1.				insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				TCATACCAATCTTCAAGTACA	0.378													12	37					0	0	6.40141e-05	0	0
SPINLW1	57119	broad.mit.edu	37	20	44171498	44171498	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:44171498C>T	uc002xou.2	-	3	264	c.232G>A	c.(232-234)GAA>AAA	p.E78K	SPINLW1_uc010zxc.1_Missense_Mutation_p.E78K|SPINLW1_uc002xot.2_Missense_Mutation_p.E62K|SPINLW1_uc002xov.1_3'UTR	NM_020398	NP_065131	O95925	EPPI_HUMAN	serine peptidase inhibitor-like, with Kunitz and	78	BPTI/Kunitz inhibitor.					extracellular region	serine-type endopeptidase inhibitor activity			pancreas(1)	1		Myeloproliferative disorder(115;0.0122)				TTTGGCATTTCGCATACATCT	0.428													10	52					0	0	6.40141e-05	0	0
PMEPA1	56937	broad.mit.edu	37	20	56227293	56227293	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:56227293C>T	uc002xyq.2	-	4	1073	c.680G>A	c.(679-681)GGG>GAG	p.G227E	PMEPA1_uc002xyr.2_Missense_Mutation_p.G177E|PMEPA1_uc002xys.2_Missense_Mutation_p.G192E|PMEPA1_uc002xyt.2_Missense_Mutation_p.G177E	NM_020182	NP_064567	Q969W9	PMEPA_HUMAN	transmembrane prostate androgen-induced protein	227	Cytoplasmic (Potential).				androgen receptor signaling pathway	integral to membrane|plasma membrane	WW domain binding			pancreas(1)	1						GGGCGGCGGCCCCTCCATGCG	0.711													3	7					0	0	6.4e-05	0	0
APCDD1L	164284	broad.mit.edu	37	20	57036200	57036201	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:57036200_57036201GG>AA	uc002xze.1	-	4	1337_1338	c.1151_1152CC>TT	c.(1150-1152)GCC>GTT	p.A384V	APCDD1L_uc010zzp.1_Missense_Mutation_p.A395V	NM_153360	NP_699191	Q8NCL9	APCDL_HUMAN	adenomatosis polyposis coli down-regulated	384						integral to membrane				ovary(1)	1	Lung NSC(12;0.000856)|all_lung(29;0.0025)		BRCA - Breast invasive adenocarcinoma(13;5.6e-11)|Epithelial(14;1.67e-07)|all cancers(14;1.48e-06)			CCATGGACCAGGCCCCCGCACC	0.629													15	49					0	0	6.4e-05	0	0
SS18L1	26039	broad.mit.edu	37	20	60733767	60733767	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:60733767G>A	uc002ycb.2	+	2	164	c.109G>A	c.(109-111)GAG>AAG	p.E37K	SS18L1_uc011aaa.1_Missense_Mutation_p.E37K|SS18L1_uc002ybz.1_RNA|SS18L1_uc002yca.1_RNA|SS18L1_uc002ycc.1_5'Flank	NM_198935	NP_945173	O75177	CREST_HUMAN	SS18-like protein 1	37	N-terminal auto-inhibitory domain; necessary for interaction with SMARCA4/BRG1 (By similarity).				chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed chromosome kinetochore				ovary(2)	2	Breast(26;3.97e-09)		BRCA - Breast invasive adenocarcinoma(19;1.92e-08)			GTGCATCCTGGAGTACCAGAG	0.632			T	SSX1	synovial sarcoma								13	35					0	0	0.00010058	0	0
COL20A1	57642	broad.mit.edu	37	20	61929332	61929332	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr20:61929332G>A	uc011aau.1	+	3	253	c.153G>A	c.(151-153)GGG>GGA	p.G51G		NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	51	Fibronectin type-III 1.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					AGTCGGAGGGGAGCGGCCTCG	0.632													11	27					0	0	0.000219431	0	0
TPTE	7179	broad.mit.edu	37	21	10906987	10906987	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr21:10906987C>T	uc002yip.1	-	24	1942	c.1574G>A	c.(1573-1575)AGA>AAA	p.R525K	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.R507K|TPTE_uc002yir.1_Missense_Mutation_p.R487K|TPTE_uc010gkv.1_Missense_Mutation_p.R387K	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	525	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGGATAAATTCTCCGTGCTTT	0.358													11	63					0	0	6.40141e-05	0	0
SAMSN1	64092	broad.mit.edu	37	21	15882726	15882726	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr21:15882726C>T	uc002yju.1	-	5	548	c.466G>A	c.(466-468)GAC>AAC	p.D156N	SAMSN1_uc010gky.1_Intron|SAMSN1_uc002yjv.1_Missense_Mutation_p.D224N	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	156					negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		GGGCCATCGTCATCCAGTCGA	0.488													10	41					0	0	0.000673444	0	0
DNAJC28	54943	broad.mit.edu	37	21	34861163	34861163	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr21:34861163G>A	uc002yrv.2	-	2	987	c.538C>T	c.(538-540)CCT>TCT	p.P180S	DNAJC28_uc002yrw.2_Missense_Mutation_p.P180S	NM_017833	NP_060303	Q9NX36	DJC28_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 28	180							heat shock protein binding				0						ACACTATCAGGAAAATACTGG	0.393													17	95					0	0	0.000958276	0	0
DSCR6	53820	broad.mit.edu	37	21	38385891	38385891	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr21:38385891G>A	uc002yvv.2	+	3	422	c.212G>A	c.(211-213)GGA>GAA	p.G71E	DSCR6_uc011aec.1_5'UTR|DSCR6_uc010gnd.2_Intron	NM_018962	NP_061835	P57055	DSCR6_HUMAN	Down syndrome critical region protein 6	71						nucleus				breast(1)	1		Myeloproliferative disorder(46;0.0632)				GGATCAAAGGGAGCCTTTGGG	0.413													6	26					0	0	0.000157383	0	0
KCNJ6	3763	broad.mit.edu	37	21	38997703	38997703	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr21:38997703C>T	uc011aej.1	-	4	1083	c.1030G>A	c.(1030-1032)GAC>AAC	p.D344N	KCNJ6_uc002ywo.2_Missense_Mutation_p.D344N	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	344	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	TAGAACCCGTCCTCCAGGGTC	0.552													4	37					0	0	3.59834e-05	0	0
ZNF295	49854	broad.mit.edu	37	21	43411721	43411721	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr21:43411721G>A	uc002zab.3	-	3	2698	c.2484C>T	c.(2482-2484)TCC>TCT	p.S828S	ZNF295_uc002yzz.3_Silent_p.S627S|ZNF295_uc002yzy.3_Silent_p.S828S|ZNF295_uc002zaa.3_Silent_p.S828S	NM_001098402	NP_001091872	Q9ULJ3	ZN295_HUMAN	zinc finger protein 295 isoform L	828					negative regulation of transcription, DNA-dependent|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|nucleus	methyl-CpG binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GCTCAGGCTGGGATTGGGGCC	0.458													9	42					0	0	0.000673444	0	0
DGCR8	54487	broad.mit.edu	37	22	20096481	20096481	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr22:20096481C>T	uc002zri.2	+	13	2543	c.2193C>T	c.(2191-2193)ATC>ATT	p.I731I	DGCR8_uc010grz.2_Silent_p.I698I|DGCR8_uc002zrj.2_Silent_p.I374I	NM_022720	NP_073557	Q8WYQ5	DGCR8_HUMAN	DiGeorge syndrome critical region gene 8	731	Necessary for heme-binding and pri-miRNA processing.|Necessary for interaction with DROSHA.				primary miRNA processing	cytoplasm|cytoplasm|microtubule cytoskeleton|nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding				0	Colorectal(54;0.0993)					ACCTGCACATCCTCAGCAAGC	0.577													26	62					0	0	0.000147802	0	0
LOC96610	96610	broad.mit.edu	37	22	23104890	23104890	+	Splice_Site	SNP	C	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr22:23104890C>G	uc011aim.1	+	221		c.11264_splice	c.e221-2							Parts of antibodies, mostly variable regions.												0						GACTGGTACCCGCAAAAGCCA	0.572													5	21					0	0	0.000602214	0	0
SEZ6L	23544	broad.mit.edu	37	22	26702049	26702049	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr22:26702049G>A	uc003acb.2	+	6	1609	c.1453G>A	c.(1453-1455)GCT>ACT	p.A485T	SEZ6L_uc003acc.2_Missense_Mutation_p.A485T|SEZ6L_uc011akc.1_Missense_Mutation_p.A485T|SEZ6L_uc003acd.2_Missense_Mutation_p.A485T|SEZ6L_uc011akd.1_Missense_Mutation_p.A485T|SEZ6L_uc003ace.2_Missense_Mutation_p.A485T|SEZ6L_uc003acf.1_Missense_Mutation_p.A258T|SEZ6L_uc010gvc.1_Missense_Mutation_p.A258T	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	485	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GACGATTGAAGCTCCAGAGGG	0.552													5	49					0	0	3.59834e-05	0	0
TMEM184B	25829	broad.mit.edu	37	22	38620791	38620791	+	Splice_Site	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr22:38620791C>T	uc003avf.1	-	8	1206	c.982_splice	c.e8+1	p.G328_splice	TMEM184B_uc003avg.1_Splice_Site_p.G328_splice|TMEM184B_uc003avh.1_Splice_Site_p.G262_splice	NM_012264	NP_036396	Q9Y519	T184B_HUMAN	transmembrane protein 184B							integral to membrane					0	Melanoma(58;0.045)					CTGGCTCATACCTTGTGCGTC	0.612													8	38					0	0	0.000274275	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45255643	45255643	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr22:45255643C>T	uc003bfd.2	+	16	1812	c.1540C>T	c.(1540-1542)CGC>TGC	p.R514C	PRR5-ARHGAP8_uc003bfc.2_Missense_Mutation_p.R435C|PRR5-ARHGAP8_uc011aqi.1_Missense_Mutation_p.R426C|PRR5-ARHGAP8_uc011aqj.1_Missense_Mutation_p.R357C|ARHGAP8_uc010gzv.2_Intron|ARHGAP8_uc003bfj.2_Missense_Mutation_p.R335C|ARHGAP8_uc003bfk.2_Missense_Mutation_p.R304C|ARHGAP8_uc003bfl.2_RNA	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						CACTGGCTGCCGCCAGATCTT	0.677													8	35					0	0	0.000219431	0	0
GTSE1	51512	broad.mit.edu	37	22	46725451	46725451	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr22:46725451C>T	uc011aqy.1	+	11	2335	c.2123C>T	c.(2122-2124)CCG>CTG	p.P708L	GTSE1_uc011aqz.1_Missense_Mutation_p.P555L|GTSE1_uc003bhn.2_RNA|uc011ara.1_5'Flank|uc003bho.3_5'Flank	NM_016426	NP_057510	Q9NYZ3	GTSE1_HUMAN	G-2 and S-phase expressed 1	689					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G2 phase of mitotic cell cycle|microtubule-based process	cytoplasmic microtubule				ovary(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00462)		AAACCTTCACCGGTGGTGGGA	0.542													8	38					0	0	0.000157383	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50665429	50665429	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr22:50665429G>A	uc003bkb.1	-	6	2002	c.1490C>T	c.(1489-1491)ACC>ATC	p.T497I	TUBGCP6_uc010har.1_Missense_Mutation_p.T497I|TUBGCP6_uc010has.1_RNA|TUBGCP6_uc010hat.1_5'Flank|TUBGCP6_uc003bkd.1_5'Flank	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	497					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		ACAACTCACGGTGGGAAACGC	0.692													4	8					0	0	0.00024832	0	0
LHFPL4	375323	broad.mit.edu	37	3	9547826	9547826	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:9547826C>T	uc003bry.2	-	3	754	c.468G>A	c.(466-468)CGG>CGA	p.R156R		NM_198560	NP_940962	Q7Z7J7	LHPL4_HUMAN	lipoma HMGIC fusion partner-like 4	156						integral to membrane				ovary(2)|skin(1)	3	Medulloblastoma(99;0.227)					CACACATGTCCCGGATGGTCT	0.632													20	29					0	0	0.000175454	0	0
SLC6A11	6538	broad.mit.edu	37	3	10865069	10865069	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:10865069G>A	uc003bvz.2	+	4	649	c.615G>A	c.(613-615)GAG>GAA	p.E205E	SLC6A11_uc003bvy.1_Silent_p.E205E	NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	205	Extracellular (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		CTGTCATGGAGTTTTGGGAGT	0.507													17	19					0	0	0.000566183	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751901	26751901	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:26751901G>A	uc003cdp.2	+	2	1327	c.738G>A	c.(736-738)CAG>CAA	p.Q246Q	LRRC3B_uc003cdq.2_Silent_p.Q246Q	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	246						integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						CAAGCAGGCAGAAGAAAGCAG	0.423													9	19					0	0	0.000673444	0	0
NEK10	152110	broad.mit.edu	37	3	27215979	27215979	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:27215979C>T	uc010hfk.2	-	7	892	c.663G>A	c.(661-663)TCG>TCA	p.S221S	NEK10_uc003cds.1_Silent_p.S306S|NEK10_uc010hfj.2_Silent_p.S221S			Q6ZWH5	NEK10_HUMAN	RecName: Full=Serine/threonine-protein kinase Nek10;          EC=2.7.11.1; AltName: Full=NimA-related protein kinase 10;	909							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						TGGAGTTATCCGAAATGTCCA	0.383													27	51					0	0	0.000227799	0	0
SCN5A	6331	broad.mit.edu	37	3	38674603	38674603	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:38674603C>T	uc003cio.2	-	2	390	c.196G>A	c.(196-198)GAT>AAT	p.D66N	SCN5A_uc003cin.2_Missense_Mutation_p.D66N|SCN5A_uc003cil.3_Missense_Mutation_p.D66N|SCN5A_uc010hhi.2_Missense_Mutation_p.D66N|SCN5A_uc010hhk.2_Missense_Mutation_p.D66N|SCN5A_uc011ayr.1_Missense_Mutation_p.D66N	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	66					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CCATAGAGATCTGGCAGCTTT	0.642													7	16					0	0	8.12818e-05	0	0
CTNNB1	1499	broad.mit.edu	37	3	41278183	41278184	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:41278183_41278184CC>TT	uc010hia.1	+	14	2215_2216	c.2059_2060CC>TT	c.(2059-2061)CCA>TTA	p.P687L	CTNNB1_uc003ckp.2_Missense_Mutation_p.P687L|CTNNB1_uc003ckq.2_Missense_Mutation_p.P687L|CTNNB1_uc003ckr.2_Missense_Mutation_p.P687L|CTNNB1_uc011azf.1_Missense_Mutation_p.P680L|CTNNB1_uc011azg.1_Missense_Mutation_p.P615L|CTNNB1_uc003cks.2_3'UTR|CTNNB1_uc003ckt.1_3'UTR	NM_001904	NP_001895	P35222	CTNB1_HUMAN	beta-catenin	687					adherens junction assembly|androgen receptor signaling pathway|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell-cell adhesion|cell-matrix adhesion|cellular component disassembly involved in apoptosis|cellular response to growth factor stimulus|cellular response to indole-3-methanol|central nervous system vasculogenesis|cytoskeletal anchoring at plasma membrane|determination of dorsal/ventral asymmetry|dorsal/ventral axis specification|ectoderm development|embryonic axis specification|embryonic foregut morphogenesis|embryonic leg joint morphogenesis|endodermal cell fate commitment|endothelial tube morphogenesis|epithelial to mesenchymal transition|gastrulation with mouth forming second|glial cell fate determination|hair follicle morphogenesis|hair follicle placode formation|hindbrain development|liver development|lung cell differentiation|lung induction|lung-associated mesenchyme development|male genitalia development|mesenchymal cell proliferation involved in lung development|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of osteoclast differentiation|negative regulation of transcription from RNA polymerase II promoter|nephron tubule formation|odontogenesis of dentine-containing tooth|oocyte development|pancreas development|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of branching involved in lung morphogenesis|positive regulation of epithelial cell proliferation involved in prostate gland development|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of muscle cell differentiation|positive regulation of osteoblast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein localization at cell surface|proximal/distal pattern formation|regulation of angiogenesis|regulation of calcium ion import|regulation of centriole-centriole cohesion|regulation of centromeric sister chromatid cohesion|regulation of fibroblast proliferation|regulation of nephron tubule epithelial cell differentiation|regulation of protein localization at cell surface|regulation of smooth muscle cell proliferation|regulation of T cell proliferation|renal inner medulla development|renal outer medulla development|renal vesicle formation|response to drug|response to estradiol stimulus|Schwann cell proliferation|smooth muscle cell differentiation|synapse organization|synaptic vesicle transport|T cell differentiation in thymus|thymus development|trachea formation	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin-TCF7L2 complex|catenin complex|cell cortex|cell-substrate adherens junction|centrosome|dendritic shaft|desmosome|fascia adherens|internal side of plasma membrane|lamellipodium|lateral plasma membrane|microvillus membrane|perinuclear region of cytoplasm|protein-DNA complex|synapse|transcription factor complex|Z disc|zonula adherens	alpha-catenin binding|androgen receptor binding|cadherin binding|estrogen receptor binding|I-SMAD binding|ion channel binding|protein binding|protein C-terminus binding|protein kinase binding|protein phosphatase binding|R-SMAD binding|RPTP-like protein binding|signal transducer activity|specific RNA polymerase II transcription factor activity|structural molecule activity|transcription coactivator activity|transcription regulatory region DNA binding		CTNNB1/PLAG1(60)	liver(806)|soft_tissue(609)|large_intestine(243)|endometrium(222)|kidney(172)|stomach(157)|central_nervous_system(139)|ovary(104)|skin(97)|pancreas(91)|adrenal_gland(85)|pituitary(81)|salivary_gland(62)|haematopoietic_and_lymphoid_tissue(57)|thyroid(55)|biliary_tract(41)|lung(38)|prostate(24)|bone(20)|small_intestine(17)|cervix(9)|parathyroid(9)|urinary_tract(8)|breast(7)|oesophagus(5)|NS(3)|pleura(2)|upper_aerodigestive_tract(2)|eye(1)	3166				KIRC - Kidney renal clear cell carcinoma(284;0.0028)|Kidney(284;0.00294)	Lithium(DB01356)	CAGAACAGAGCCAATGGCTTGG	0.441		15	H|Mis|T	PLAG1	colorectal|cvarian| hepatoblastoma|others|pleomorphic salivary adenoma				Pilomatrixoma_Familial_Clustering_of				31	80					0	0	6.4e-05	0	0
COL7A1	1294	broad.mit.edu	37	3	48613167	48613168	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:48613167_48613168CC>TT	uc003ctz.2	-	72	5871_5872	c.5870_5871GG>AA	c.(5869-5871)CGG>CAA	p.R1957Q		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1957	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CCACGATCTCCCGCAGGGCAGA	0.683													9	23					0	0	6.4e-05	0	0
IQCF1	132141	broad.mit.edu	37	3	51928924	51928924	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:51928924G>A	uc003dbv.2	-	4	698	c.600C>T	c.(598-600)CCC>CCT	p.P200P	IQCF1_uc003dbq.3_Intron	NM_152397	NP_689610	Q8N6M8	IQCF1_HUMAN	IQ motif containing F1	200										ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		TTATTGAGAAGGGAATACACT	0.403													12	36					0	0	0.00010058	0	0
CNTN3	5067	broad.mit.edu	37	3	74347205	74347205	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:74347205G>A	uc003dpm.1	-	17	2384	c.2304C>T	c.(2302-2304)ATC>ATT	p.I768I		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	768	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		AATATGGCACGATGCTTTCAT	0.453													22	36					0	0	0.00047179	0	0
OR5H15	403274	broad.mit.edu	37	3	97888274	97888274	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:97888274A>G	uc011bgu.1	+	1	731	c.731A>G	c.(730-732)CAT>CGT	p.H244R		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TGTGGAGCCCATCTCTTCTCT	0.423													14	73					0	0	0.000566183	0	0
FILIP1L	11259	broad.mit.edu	37	3	99567893	99567893	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:99567893C>T	uc003dtm.2	-	5	3090	c.2627G>A	c.(2626-2628)GGA>GAA	p.G876E	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Missense_Mutation_p.G876E|FILIP1L_uc010hpf.2_Missense_Mutation_p.G452E|FILIP1L_uc010hpg.2_Missense_Mutation_p.G636E|FILIP1L_uc003dtn.2_Missense_Mutation_p.G636E|FILIP1L_uc003dtp.1_Missense_Mutation_p.G636E	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	876						cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						TTGCATTTTTCCATTCTGAAG	0.463													55	123					0	0	0.000781405	0	0
MORC1	27136	broad.mit.edu	37	3	108751602	108751602	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:108751602C>T	uc003dxl.2	-	16	1617	c.1530G>A	c.(1528-1530)TGG>TGA	p.W510*	MORC1_uc011bhn.1_Nonsense_Mutation_p.W510*	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	510	CW-type.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TAGCACAAATCCAAATGTCAA	0.284													13	51					0	0	0.000308642	0	0
DIRC2	84925	broad.mit.edu	37	3	122598138	122598139	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:122598138_122598139CG>AT	uc003efw.3	+	9	1489_1490	c.1350_1351CG>AT	c.(1348-1353)CCCGGG>CCATGG	p.G451W	DIRC2_uc010hrl.2_RNA|DIRC2_uc010hrm.2_Missense_Mutation_p.G289W|uc003efx.1_RNA	NM_032839	NP_116228	Q96SL1	DIRC2_HUMAN	disrupted in renal carcinoma 2	451	Helical; (Potential).				transport	integral to membrane					0				GBM - Glioblastoma multiforme(114;0.0614)		GGTGCCTTCCCGGGTCGTGTTT	0.455													13	458					0	0	6.4e-05	0	0
MYLK	4638	broad.mit.edu	37	3	123419379	123419379	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:123419379G>A	uc003ego.2	-	18	3218	c.2936C>T	c.(2935-2937)CCG>CTG	p.P979L	MYLK_uc011bjw.1_Missense_Mutation_p.P979L|MYLK_uc003egp.2_Missense_Mutation_p.P910L|MYLK_uc003egq.2_Missense_Mutation_p.P979L|MYLK_uc003egr.2_Missense_Mutation_p.P910L|MYLK_uc003egs.2_Missense_Mutation_p.P803L|MYLK_uc003egt.2_Missense_Mutation_p.P170L	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	979	1-4.|5 X 28 AA approximate tandem repeats.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		GCGAAAATCCGGGGTGGCAGG	0.587													16	48					0	0	0.000958276	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125844480	125844480	+	Silent	SNP	T	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:125844480T>G	uc003eim.1	-	15	1969	c.1779A>C	c.(1777-1779)ACA>ACC	p.T593T	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Silent_p.T492T	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	593	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	TGATCACCACTGTGTTCCCGG	0.567													13	74					0	0	0.000308642	0	0
KY	339855	broad.mit.edu	37	3	134322923	134322923	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:134322923G>A	uc010hty.2	-	11	1546	c.1484C>T	c.(1483-1485)TCC>TTC	p.S495F	KY_uc011blw.1_3'UTR|KY_uc011blx.1_Missense_Mutation_p.S474F	NM_178554	NP_848649	Q8NBH2	KY_HUMAN	kyphoscoliosis peptidase	495						cytoskeleton|Z disc	peptidase activity			ovary(2)	2						CCCGTGGAGGGAAGCCAGGAC	0.617													5	10					0	0	8.12818e-05	0	0
EPHB1	2047	broad.mit.edu	37	3	134514512	134514512	+	Silent	SNP	C	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:134514512C>G	uc003eqt.2	+	1	259	c.39C>G	c.(37-39)TCC>TCG	p.S13S	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Silent_p.S13S	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	13						integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						TCCTGGCATCCGCAGTGGCTG	0.692													3	127					0	0	0.000602214	0	0
CEP70	80321	broad.mit.edu	37	3	138289293	138289293	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:138289293C>A	uc003esl.2	-	6	530	c.332G>T	c.(331-333)CGA>CTA	p.R111L	CEP70_uc011bmk.1_Missense_Mutation_p.R91L|CEP70_uc011bml.1_Missense_Mutation_p.R93L|CEP70_uc011bmm.1_Intron|CEP70_uc003esm.2_Missense_Mutation_p.R111L|CEP70_uc003esn.2_Missense_Mutation_p.R111L	NM_024491	NP_077817	Q8NHQ1	CEP70_HUMAN	centrosomal protein 70 kDa	111	Potential.				G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding			skin(1)	1						GTCATTAGCTCGTTGTTCTTG	0.348													9	767					0.000673444	0.00738972	0.000673444	1	0
XRN1	54464	broad.mit.edu	37	3	142030585	142030585	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:142030585G>A	uc003eus.2	-	42	4956	c.4889C>T	c.(4888-4890)CCA>CTA	p.P1630L	XRN1_uc010huu.2_Missense_Mutation_p.P1084L|XRN1_uc003eut.2_Missense_Mutation_p.P1617L|XRN1_uc003euu.2_Missense_Mutation_p.P1618L	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	1630					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						AGTCTGAACTGGAGTGGCTTG	0.418													16	53					0	0	0.000229342	0	0
P2RY14	9934	broad.mit.edu	37	3	150931937	150931937	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:150931937G>A	uc003eyr.1	-	3	646	c.168C>T	c.(166-168)TTC>TTT	p.F56F	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron|P2RY14_uc003eys.1_Silent_p.F56F	NM_001081455	NP_001074924	Q15391	P2Y14_HUMAN	P2Y14 receptor	56	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled|UDP-activated nucleotide receptor activity			large_intestine(2)|ovary(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GATAGATGATGAAACTCTTAG	0.443													11	68					0	0	0.00010058	0	0
PLCH1	23007	broad.mit.edu	37	3	155200465	155200465	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:155200465C>T	uc011bok.1	-	23	3651	c.3374G>A	c.(3373-3375)GGA>GAA	p.G1125E	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.G1087E	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1125					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			AAGGACGCTTCCTGACAAGAT	0.463													13	59					0	0	0.000151284	0	0
SMC4	10051	broad.mit.edu	37	3	160135741	160135741	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:160135741G>A	uc003fdh.2	+	11	1781	c.1668G>A	c.(1666-1668)AAG>AAA	p.K556K	IFT80_uc003fda.2_Intron|SMC4_uc010hwc.1_Silent_p.K320K|SMC4_uc003fdi.2_Silent_p.K531K|SMC4_uc003fdj.2_Silent_p.K556K|SMC4_uc010hwd.2_Silent_p.K556K|SMC4_uc003fdl.2_Silent_p.K259K	NM_001002800	NP_001002800	Q9NTJ3	SMC4_HUMAN	SMC4 structural maintenance of chromosomes	556	Potential.				cell division|mitotic chromosome condensation	condensin complex|cytoplasm|nucleus	ATP binding|protein heterodimerization activity			ovary(1)|breast(1)	2			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			AAGAATTAAAGGAGGTAAATC	0.388													5	11					0	0	0.000602214	0	0
EIF2B5	8893	broad.mit.edu	37	3	183858487	183858487	+	Silent	SNP	C	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:183858487C>A	uc003fmp.2	+	7	1489	c.1125C>A	c.(1123-1125)ACC>ACA	p.T375T	EIF2B5_uc003fmq.2_Silent_p.T96T|EIF2B5_uc003fmr.2_5'Flank	NM_003907	NP_003898	Q13144	EI2BE_HUMAN	eukaryotic translation initiation factor 2B,	375					astrocyte development|myelination|negative regulation of translational initiation in response to stress|oligodendrocyte development|ovarian follicle development|positive regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus|RNA metabolic process	cytosol|eukaryotic translation initiation factor 2B complex|nucleus	guanyl-nucleotide exchange factor activity|transferase activity|translation initiation factor activity|translation initiation factor binding			ovary(5)	5	all_cancers(143;7.59e-11)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			GCTTTATCACCAACAGTGTCA	0.572													5	66					0.000602214	0.00663565	0.000602214	1	0
MAP3K13	9175	broad.mit.edu	37	3	185167787	185167787	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:185167787C>T	uc010hyf.2	+	7	1376	c.1110C>T	c.(1108-1110)CTC>CTT	p.L370L	MAP3K13_uc011brt.1_Silent_p.L163L|MAP3K13_uc003fph.3_Silent_p.L138L|MAP3K13_uc011bru.1_Silent_p.L226L|MAP3K13_uc003fpi.2_Silent_p.L370L|MAP3K13_uc010hyg.2_Silent_p.L60L	NM_004721	NP_004712	O43283	M3K13_HUMAN	mitogen-activated protein kinase kinase kinase	370	Protein kinase.				activation of MAPKK activity|JNK cascade|positive regulation of NF-kappaB transcription factor activity|protein autophosphorylation	cytoplasm|membrane|membrane fraction	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			ovary(2)|skin(1)	3	all_cancers(143;7.21e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			GCAACAGCCTCCACCTTCCAG	0.453													39	101					0	0	0.000437636	0	0
IQCG	84223	broad.mit.edu	37	3	197665517	197665517	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:197665517G>A	uc003fyo.2	-	4	563	c.417C>T	c.(415-417)TTC>TTT	p.F139F	IQCG_uc003fyn.2_Silent_p.F41F|IQCG_uc003fyp.2_Silent_p.F139F|IQCG_uc003fyq.3_Silent_p.F139F	NM_001134435	NP_001127907	Q9H095	IQCG_HUMAN	IQ motif containing G	139											0	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;7.19e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.149)		ACTCCACAGCGAACCGGCCTC	0.428													82	282					0	0	0.000781405	0	0
C4orf44	345222	broad.mit.edu	37	4	3255173	3255173	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr4:3255173C>T	uc003ggs.2	+	2	743	c.560C>T	c.(559-561)TCC>TTC	p.S187F	C4orf44_uc003ggt.2_Missense_Mutation_p.S187F	NM_001042690	NP_001036155	Q6ZTZ1	CD044_HUMAN	hypothetical protein LOC345222 isoform a	187											0						GATGATCGCTCCGACAGCTCC	0.587													29	71					0	0	0.000279167	0	0
MAN2B2	23324	broad.mit.edu	37	4	6611595	6611595	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr4:6611595G>A	uc003gjf.1	+	13	2113	c.2077G>A	c.(2077-2079)GGG>AGG	p.G693R	MAN2B2_uc003gje.1_Missense_Mutation_p.G693R|MAN2B2_uc011bwf.1_Missense_Mutation_p.G642R	NM_015274	NP_056089	Q9Y2E5	MA2B2_HUMAN	mannosidase, alpha, class 2B, member 2	693					mannose metabolic process	extracellular region	alpha-mannosidase activity|carbohydrate binding|zinc ion binding			ovary(2)	2						GGGCCATGACGGGGAGCTGCT	0.592													9	37					0	0	0.000274275	0	0
GNPDA2	132789	broad.mit.edu	37	4	44712985	44712985	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr4:44712985C>T	uc003gwy.2	-	5	736	c.579G>A	c.(577-579)GTG>GTA	p.V193V	GNPDA2_uc010iga.2_Silent_p.V159V|GNPDA2_uc011bzb.1_Silent_p.V123V|GNPDA2_uc003gwz.1_Silent_p.V193V	NM_138335	NP_612208	Q8TDQ7	GNPI2_HUMAN	glucosamine-6-phosphate deaminase 2	193					N-acetylglucosamine metabolic process	cytoplasm	glucosamine-6-phosphate deaminase activity|hydrolase activity			ovary(1)	1						TAGCATCCATCACTGTCCCCA	0.348													16	92					0	0	0.00074312	0	0
THAP6	152815	broad.mit.edu	37	4	76452300	76452300	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr4:76452300C>T	uc003him.2	+	5	642	c.545C>T	c.(544-546)TCA>TTA	p.S182L	THAP6_uc003hin.2_Missense_Mutation_p.S140L|THAP6_uc011cbm.1_Intron|THAP6_uc010iiu.1_Intron|THAP6_uc003hio.1_Intron|THAP6_uc010iiv.2_Missense_Mutation_p.S182L	NM_144721	NP_653322	Q8TBB0	THAP6_HUMAN	THAP domain containing 6	182	Potential.					microtubule cytoskeleton	DNA binding|metal ion binding				0			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			TTTCAGAAATCATTGAGGAAG	0.398													7	28					0	0	0.000274275	0	0
MRPS18C	51023	broad.mit.edu	37	4	84379500	84379500	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr4:84379500C>T	uc003hor.3	+	3	265	c.152C>T	c.(151-153)CCC>CTC	p.P51L	HELQ_uc003hom.2_5'Flank|HELQ_uc010ikb.2_5'Flank|HELQ_uc003hol.3_5'Flank|HELQ_uc010ikc.2_5'Flank|HELQ_uc003hon.1_5'Flank|HELQ_uc003hoo.1_5'Flank|HELQ_uc003hop.1_5'Flank|HELQ_uc003hoq.1_5'Flank|MRPS18C_uc011ccu.1_Missense_Mutation_p.P51L	NM_016067	NP_057151	Q9Y3D5	RT18C_HUMAN	mitochondrial ribosomal protein S18C precursor	51					translation	mitochondrial small ribosomal subunit	structural constituent of ribosome				0		Hepatocellular(203;0.114)				TTTCCCTAGCCCATTTCAATG	0.303													5	43					0	0	3.59834e-05	0	0
ADH1A	124	broad.mit.edu	37	4	100242475	100242475	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr4:100242475C>T	uc011ceg.1	-	1	98	c.14G>A	c.(13-15)GGA>GAA	p.G5E	ADH1B_uc003hus.3_Missense_Mutation_p.G5E|ADH1B_uc003hut.3_5'UTR|ADH1B_uc011ceh.1_5'UTR|ADH1B_uc011cei.1_5'UTR	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	5					ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	GCTTACTTTTCCTGCTGTGCT	0.333													11	41					0	0	0.000151284	0	0
FSTL5	56884	broad.mit.edu	37	4	162376250	162376250	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr4:162376250G>A	uc003iqh.2	-	15	2183	c.1747C>T	c.(1747-1749)CAC>TAC	p.H583Y	FSTL5_uc003iqi.2_Missense_Mutation_p.H582Y|FSTL5_uc010iqv.2_Missense_Mutation_p.H573Y	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	583						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		ATCGTGTGGTGAGGCACATTC	0.418													18	21					0	0	0.00074312	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	173029	173029	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:173029G>A	uc003jak.2	+	15	3050	c.3000G>A	c.(2998-3000)CAG>CAA	p.Q1000Q		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	1000	PH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		TGAAGGAACAGGGGCAGCTGA	0.498													31	64					0	0	0.000814825	0	0
DNAH5	1767	broad.mit.edu	37	5	13841969	13841969	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:13841969C>T	uc003jfd.2	-	33	5358	c.5316G>A	c.(5314-5316)ACG>ACA	p.T1772T		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1772	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCAATTCAATCGTCTCACCCT	0.353									Kartagener_syndrome				36	82					0	0	0.000270559	0	0
CDH9	1007	broad.mit.edu	37	5	26903764	26903764	+	Silent	SNP	C	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:26903764C>G	uc003jgs.1	-	6	1150	c.981G>C	c.(979-981)GGG>GGC	p.G327G	CDH9_uc010iug.2_Silent_p.G327G	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	327	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						CAGTTATAATCCCTTCCTGTG	0.408													60	99					0	0	0.000781405	0	0
IL7R	3575	broad.mit.edu	37	5	35876102	35876102	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:35876102C>T	uc003jjs.2	+	8	983	c.894C>T	c.(892-894)TTC>TTT	p.F298F	IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	298	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			ATGTGAGTTTCAATCCTGAAA	0.418													24	41					0	0	0.00047179	0	0
UGT3A1	133688	broad.mit.edu	37	5	35965875	35965875	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:35965875G>A	uc003jjv.1	-	4	613	c.456C>T	c.(454-456)TTC>TTT	p.F152F	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Silent_p.F152F|UGT3A1_uc011cor.1_Silent_p.F118F|UGT3A1_uc003jjy.1_Silent_p.F98F	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	152	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CAGCAATCAGGAAAGAACAGA	0.398													18	38					0	0	0.000132079	0	0
EGFLAM	133584	broad.mit.edu	37	5	38438540	38438540	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:38438540G>A	uc003jlc.1	+	17	2771	c.2447G>A	c.(2446-2448)GGG>GAG	p.G816E	EGFLAM_uc003jlb.1_Missense_Mutation_p.G816E|EGFLAM_uc003jle.1_Missense_Mutation_p.G582E|EGFLAM_uc003jlf.1_Missense_Mutation_p.G182E	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	816	EGF-like 3.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GGCTTTGAGGGGCTTCACTGC	0.622													7	16					0	0	0.000442599	0	0
C7	730	broad.mit.edu	37	5	40936531	40936531	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:40936531G>A	uc003jmh.2	+	5	486	c.372G>A	c.(370-372)AGG>AGA	p.R124R	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	124	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				ACTCAGAAAGGAGACCTTCCT	0.458													15	21					0	0	0.000308642	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64748012	64748012	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:64748012C>T	uc003jtp.2	-	6	1689	c.875G>A	c.(874-876)GGA>GAA	p.G292E	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_5'UTR	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	292	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		CACAACGTTTCCTAGGCTGGA	0.353													16	54					0	0	0.000958276	0	0
BDP1	55814	broad.mit.edu	37	5	70858216	70858216	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:70858216T>A	uc003kbp.1	+	38	7875	c.7612T>A	c.(7612-7614)TTA>ATA	p.L2538I	BDP1_uc003kbq.1_RNA|BDP1_uc003kbr.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	2538					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		TATACCTGGATTAAGAAAGAA	0.358													13	57					0	0	0.000151284	0	0
F2R	2149	broad.mit.edu	37	5	76028217	76028217	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:76028217G>A	uc003ken.3	+	2	432	c.167G>A	c.(166-168)TGG>TAG	p.W56*		NM_001992	NP_001983	P25116	PAR1_HUMAN	coagulation factor II receptor precursor	56	Extracellular (Potential).				activation of caspase activity|anatomical structure morphogenesis|connective tissue replacement involved in inflammatory response wound healing|negative regulation of cell proliferation|platelet activation|positive regulation of blood coagulation|positive regulation of cell migration|positive regulation of collagen biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JAK-STAT cascade|positive regulation of MAPKKK cascade|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of transcription, DNA-dependent|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	caveola|extracellular region|Golgi apparatus|integral to plasma membrane|platelet dense tubular network	receptor binding|thrombin receptor activity			ovary(3)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)	Streptokinase(DB00086)	GAACCATTTTGGGAGGATGAG	0.353													27	63					0	0	0.000279167	0	0
TTC37	9652	broad.mit.edu	37	5	94861361	94861361	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:94861361T>C	uc003klb.2	-	14	1421	c.1151A>G	c.(1150-1152)AAT>AGT	p.N384S	TTC37_uc010jbf.1_Missense_Mutation_p.N336S	NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	384							binding			ovary(3)|pancreas(1)	4						TCCTGGGATATTATCTGCATC	0.358													67	195					0	0	0.000781405	0	0
RFESD	317671	broad.mit.edu	37	5	94990055	94990055	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:94990055A>G	uc003klf.2	+	4	1586	c.194A>G	c.(193-195)CAT>CGT	p.H65R	RFESD_uc003klg.2_Missense_Mutation_p.H118R|RFESD_uc011cun.1_Missense_Mutation_p.H118R|SPATA9_uc010jbh.1_Intron|SPATA9_uc003klh.1_Intron|SPATA9_uc003kli.1_Intron	NM_173362	NP_775498	Q8TAC1	RFESD_HUMAN	Rieske (Fe-S) domain containing isoform 2	65	Rieske 2.|Rieske 1.						2 iron, 2 sulfur cluster binding|metal ion binding|oxidoreductase activity				0		all_cancers(142;0.000215)|all_epithelial(76;7.43e-07)|all_lung(232;0.0318)|Lung NSC(167;0.041)|Ovarian(225;0.051)|Colorectal(57;0.162)		all cancers(79;5.94e-17)		GGACCTTTACATTTGGGAGAT	0.244													22	79					0	0	0.000586117	0	0
YTHDC2	64848	broad.mit.edu	37	5	112889319	112889319	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:112889319G>A	uc003kqn.2	+	14	2083	c.1900G>A	c.(1900-1902)GAA>AAA	p.E634K	YTHDC2_uc010jce.1_Missense_Mutation_p.E634K|YTHDC2_uc010jcf.1_Missense_Mutation_p.E334K	NM_022828	NP_073739	Q9H6S0	YTDC2_HUMAN	YTH domain containing 2	634	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(2)|central_nervous_system(1)	3		all_cancers(142;7.69e-05)|all_epithelial(76;6.42e-07)|Colorectal(10;0.00278)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Lung NSC(810;0.143)|all_lung(232;0.163)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;7.2e-08)|Epithelial(69;8.83e-08)|all cancers(49;6.9e-06)|COAD - Colon adenocarcinoma(37;0.0458)|Colorectal(14;0.0594)		TGGATATGACGAAATTGTTGG	0.363													19	68					0	0	0.000229342	0	0
ANKRD43	134548	broad.mit.edu	37	5	132150810	132150810	+	Silent	SNP	G	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:132150810G>T	uc003kxw.2	+	1	1778	c.1497G>T	c.(1495-1497)TCG>TCT	p.S499S		NM_175873	NP_787069	Q2M3V2	ANR43_HUMAN	ankyrin repeat domain 43 precursor	499											0		all_cancers(142;0.086)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TGAAGAAGTCGAGCTCCTTCA	0.587													10	31					4.68919e-08	5.25448e-07	0.000673444	1	0
KDM3B	51780	broad.mit.edu	37	5	137727397	137727397	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:137727397C>T	uc003lcy.1	+	8	2276	c.2076C>T	c.(2074-2076)CTC>CTT	p.L692L	KDM3B_uc010jew.1_Silent_p.L348L|KDM3B_uc011cys.1_Intron	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	692	Ser-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						AGAAACCCCTCTTCATTACAA	0.562													21	53					0	0	0.000175454	0	0
REEP2	51308	broad.mit.edu	37	5	137776703	137776703	+	Splice_Site	SNP	A	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:137776703A>G	uc003lcz.2	+	2	155	c.33_splice	c.e2-2	p.V11_splice	REEP2_uc003lda.2_Splice_Site_p.V11_splice|REEP2_uc011cyt.1_5'UTR	NM_016606	NP_057690	Q9BRK0	REEP2_HUMAN	receptor accessory protein 2							integral to membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CTGCCTCCCTAGGCTCATCTT	0.557													7	38					0	0	0.000157383	0	0
MATR3	9782	broad.mit.edu	37	5	138655053	138655053	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:138655053G>C	uc003ldu.2	+	12	1892	c.1465G>C	c.(1465-1467)GAT>CAT	p.D489H	MATR3_uc010jfb.2_Missense_Mutation_p.D489H|MATR3_uc003ldt.2_Missense_Mutation_p.D151H|MATR3_uc003ldw.2_Missense_Mutation_p.D489H|MATR3_uc003ldx.2_Missense_Mutation_p.D489H|MATR3_uc010jfc.2_Missense_Mutation_p.D489H|MATR3_uc003ldy.2_Missense_Mutation_p.D166H|MATR3_uc011czb.1_Missense_Mutation_p.D201H|MATR3_uc003ldz.2_Missense_Mutation_p.D489H|MATR3_uc003lea.2_Missense_Mutation_p.D489H|MATR3_uc003leb.2_Missense_Mutation_p.D151H|MATR3_uc003lec.2_Missense_Mutation_p.D166H	NM_199189	NP_954659	P43243	MATR3_HUMAN	matrin 3	489						nuclear inner membrane|nuclear matrix	nucleotide binding|protein binding|RNA binding|structural molecule activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			TCAGAAGTTTGATCAAAAGCA	0.373													14	82					0	0	0.000422831	0	0
PCDHA2	56146	broad.mit.edu	37	5	140175450	140175450	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:140175450G>A	uc003lhd.2	+	1	1007	c.901G>A	c.(901-903)GAA>AAA	p.E301K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.E301K|PCDHA2_uc011czy.1_Missense_Mutation_p.E301K	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	301	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATCTCAGGGGAAATCAGAAC	0.433													21	36					0	0	0.000295444	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140308491	140308491	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:140308491G>A	uc003lih.2	+	1	2190	c.2014G>A	c.(2014-2016)GAA>AAA	p.E672K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.E672K	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	672	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGATGTCTGGGAACCAGGAGG	0.478													33	98					0	0	0.000409698	0	0
PCDHB3	56132	broad.mit.edu	37	5	140482592	140482592	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:140482592C>T	uc003lio.2	+	1	2359	c.2359C>T	c.(2359-2361)CCC>TCC	p.P787S	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	787	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGAGGCAAATCCCAGTTTCAG	0.453													18	92					0	0	0.00047179	0	0
PCDHGB6	56100	broad.mit.edu	37	5	140788486	140788486	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:140788486C>T	uc003lkj.1	+	1	717	c.717C>T	c.(715-717)CCC>CCT	p.P239P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Silent_p.P239P	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	239	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGATAACCCCCCGGTTTTCA	0.502													10	17					0	0	0.000442599	0	0
PCDH1	5097	broad.mit.edu	37	5	141248676	141248676	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:141248676G>A	uc003llq.2	-	2	478	c.361C>T	c.(361-363)CGT>TGT	p.R121C	PCDH1_uc003llp.2_Missense_Mutation_p.R121C|PCDH1_uc011dbf.1_Missense_Mutation_p.R99C	NM_002587	NP_002578	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 1 precursor	121	Extracellular (Potential).|Cadherin 1.				cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		TGGCATTCACGGAGCCCCTCA	0.592													19	32					0	0	0.000229342	0	0
ADRB2	154	broad.mit.edu	37	5	148207177	148207177	+	Silent	SNP	T	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:148207177T>C	uc003lpr.1	+	1	1022	c.783T>C	c.(781-783)TCT>TCC	p.S261S	SH3TC2_uc003lpp.1_Intron	NM_000024	NP_000015	P07550	ADRB2_HUMAN	adrenergic, beta-2-, receptor, surface	261	Cytoplasmic.			S -> P (in Ref. 10; BAD96745).	activation of transmembrane receptor protein tyrosine kinase activity|desensitization of G-protein coupled receptor protein signaling pathway by arrestin|endosome to lysosome transport|positive regulation of MAPKKK cascade|receptor-mediated endocytosis	endosome|integral to plasma membrane|lysosome|receptor complex	beta2-adrenergic receptor activity|norepinephrine binding|potassium channel regulator activity|protein homodimerization activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Alprenolol(DB00866)|Arformoterol(DB01274)|Bambuterol(DB01408)|Bisoprolol(DB00612)|Bitolterol(DB00901)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Clenbuterol(DB01407)|Desipramine(DB01151)|Epinephrine(DB00668)|Fenoterol(DB01288)|Formoterol(DB00983)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Nadolol(DB01203)|Norepinephrine(DB00368)|Orciprenaline(DB00816)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Pirbuterol(DB01291)|Procaterol(DB01366)|Propranolol(DB00571)|Pseudoephedrine(DB00852)|Ritodrine(DB00867)|Salbutamol(DB01001)|Salmeterol(DB00938)|Terbutaline(DB00871)|Timolol(DB00373)	TCCGCAGATCTTCCAAGTTCT	0.547													13	50					0	0	0.000219431	0	0
PDGFRB	5159	broad.mit.edu	37	5	149495442	149495442	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:149495442C>T	uc003lro.2	-	23	3674	c.3205G>A	c.(3205-3207)GAA>AAA	p.E1069K	CSF1R_uc003lrm.2_5'Flank|PDGFRB_uc003lrn.1_5'Flank|PDGFRB_uc010jhd.2_Missense_Mutation_p.E908K	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	1069	Cytoplasmic (Potential).				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GGCTCTGGTTCGTCCTGGGGC	0.632			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								5	11					0	0	0.000602214	0	0
GRIA1	2890	broad.mit.edu	37	5	153030000	153030000	+	Missense_Mutation	SNP	G	A	A	rs138865459		TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:153030000G>A	uc003lva.3	+	4	936	c.571G>A	c.(571-573)GAC>AAC	p.D191N	GRIA1_uc003luy.3_Missense_Mutation_p.D191N|GRIA1_uc003luz.3_Missense_Mutation_p.D96N|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.D111N|GRIA1_uc011dcx.1_Missense_Mutation_p.D122N|GRIA1_uc011dcy.1_Missense_Mutation_p.D201N|GRIA1_uc011dcz.1_Missense_Mutation_p.D201N|GRIA1_uc010jia.1_Missense_Mutation_p.D171N	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	191	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GCTCTTTCAGGACCTGGAGAA	0.532													24	70					0	0	0.000586117	0	0
GRIA1	2890	broad.mit.edu	37	5	153149865	153149865	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:153149865C>T	uc003lva.3	+	13	2525	c.2160C>T	c.(2158-2160)TCC>TCT	p.S720S	GRIA1_uc003luy.3_Silent_p.S720S|GRIA1_uc003luz.3_Silent_p.S625S|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.S640S|GRIA1_uc011dcx.1_Silent_p.S651S|GRIA1_uc011dcy.1_Silent_p.S730S|GRIA1_uc011dcz.1_Silent_p.S730S	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	720	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TCCTGGAGTCCACCATGAATG	0.502													4	34					0	0	0.000602214	0	0
KIF4B	285643	broad.mit.edu	37	5	154396448	154396448	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:154396448C>T	uc010jih.1	+	1	3189	c.3029C>T	c.(3028-3030)ACC>ATC	p.T1010I		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	1010	Interaction with PRC1 (By similarity).|Globular (By similarity).				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CCTAATGATACCCTTCTATCT	0.423													37	116					0	0	0.000191422	0	0
TIMD4	91937	broad.mit.edu	37	5	156381674	156381674	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:156381674C>T	uc003lwh.2	-	2	209	c.152G>A	c.(151-153)AGC>AAC	p.S51N	TIMD4_uc010jii.2_Missense_Mutation_p.S51N	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	51	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CCAGCACATGCTGTTGCTGTT	0.537													114	338					0	0	0.000781405	0	0
CYFIP2	26999	broad.mit.edu	37	5	156723741	156723741	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:156723741G>A	uc003lwq.2	+	7	484	c.346G>A	c.(346-348)GAG>AAG	p.E116K	CYFIP2_uc011ddn.1_Missense_Mutation_p.E90K|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Missense_Mutation_p.E116K|CYFIP2_uc003lws.2_Missense_Mutation_p.E116K|CYFIP2_uc003lwt.2_5'UTR|CYFIP2_uc011ddp.1_5'UTR|CYFIP2_uc003lwp.2_5'UTR	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	116					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AGAGGTGCTGGAGCCGGAGGT	0.483													42	211					0	0	0.000781405	0	0
LSM11	134353	broad.mit.edu	37	5	157178450	157178450	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:157178450G>A	uc003lxe.1	+	2	505	c.501G>A	c.(499-501)GTG>GTA	p.V167V		NM_173491	NP_775762	P83369	LSM11_HUMAN	LSM11, U7 small nuclear RNA associated	167					histone mRNA 3'-end processing|S phase of mitotic cell cycle|termination of RNA polymerase II transcription	histone pre-mRNA 3'end processing complex|nucleoplasm|U7 snRNP	protein binding|U7 snRNA binding				0	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTGAGGGGGTGAAGGTGAATG	0.488													25	78					0	0	0.000586117	0	0
EBF1	1879	broad.mit.edu	37	5	158141145	158141145	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:158141145C>T	uc010jip.2	-	12	1473	c.1171G>A	c.(1171-1173)GGG>AGG	p.G391R	EBF1_uc011ddw.1_Missense_Mutation_p.G259R|EBF1_uc011ddx.1_Missense_Mutation_p.G392R|EBF1_uc003lxl.3_Missense_Mutation_p.G360R	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	391					multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGTGGCATCCCATACAGTGCT	0.468			T	HMGA2	lipoma								45	170					0	0	0.000781405	0	0
DOCK2	1794	broad.mit.edu	37	5	169507175	169507175	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:169507175G>A	uc003maf.2	+	50	5255	c.5175G>A	c.(5173-5175)AGG>AGA	p.R1725R	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Silent_p.R1217R|DOCK2_uc003mah.2_Silent_p.R281R	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1725					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGCTTTCCAGGAAGCATGAGT	0.537													13	65					0	0	0.000151284	0	0
ZNF354B	117608	broad.mit.edu	37	5	178310383	178310383	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:178310383G>C	uc003mjl.2	+	5	1156	c.930G>C	c.(928-930)AGG>AGC	p.R310S	ZNF354B_uc003mjm.2_Missense_Mutation_p.R310S	NM_058230	NP_478137	Q96LW1	Z354B_HUMAN	zinc finger protein 354B	310	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_cancers(89;0.000639)|all_epithelial(37;0.000109)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCAGTCGAAGGTCTGGGCTTT	0.413													9	52					0	0	0.000274275	0	0
F13A1	2162	broad.mit.edu	37	6	6146001	6146001	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr6:6146001T>A	uc003mwv.2	-	15	2173	c.2050A>T	c.(2050-2052)ATC>TTC	p.I684F	F13A1_uc011dib.1_Intron	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	684					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	TTGGGCCGGATTTCACTGAAA	0.517													17	39					0	0	0.000132079	0	0
RIOK1	83732	broad.mit.edu	37	6	7417618	7417618	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr6:7417618C>T	uc003mxn.2	+	17	1825	c.1651C>T	c.(1651-1653)CCT>TCT	p.P551S	RIOK1_uc003mxo.2_Missense_Mutation_p.P310S	NM_031480	NP_113668	Q9BRS2	RIOK1_HUMAN	RIO kinase 1 isoform 1	551							ATP binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|skin(1)	4	Ovarian(93;0.0418)					AAACAAAATTCCTAAACATGT	0.328													3	5					0	0	0.00024832	0	0
EEF1E1	9521	broad.mit.edu	37	6	8097525	8097525	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr6:8097525T>C	uc003mxz.2	-	2	337	c.263A>G	c.(262-264)AAA>AGA	p.K88R	EEF1E1_uc011dic.1_Missense_Mutation_p.K88R	NM_004280	NP_004271	O43324	MCA3_HUMAN	eukaryotic translation elongation factor 1	88	GST C-terminal.				negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of DNA damage response, signal transduction by p53 class mediator|tRNA aminoacylation for protein translation	cytosol|nucleus					0	Ovarian(93;0.0398)					GATGTCATTTTTACTGGAGTG	0.413													37	93					0	0	0.000437636	0	0
TRIM40	135644	broad.mit.edu	37	6	30115575	30115575	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr6:30115575C>T	uc003npk.2	+	6	1149	c.763C>T	c.(763-765)CCT>TCT	p.P255S	TRIM40_uc003npm.2_Missense_Mutation_p.P226S	NM_138700	NP_619645	Q6P9F5	TRI40_HUMAN	tripartite motif-containing 40	255						intracellular	zinc ion binding			ovary(1)	1						TCTTCAGCCCCCTCAGAAGCT	0.502													25	57					0	0	0.00047179	0	0
PPT2	9374	broad.mit.edu	37	6	32130626	32130627	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr6:32130626_32130627CG>AT	uc003nzx.2	+	9	1376_1377	c.808_809CG>AT	c.(808-810)CGG>ATG	p.R270M	PPT2_uc003nzw.2_Missense_Mutation_p.R276M|PPT2_uc011dpi.1_Intron|PPT2_uc003nzy.1_Intron|PPT2_uc003nzz.2_Missense_Mutation_p.R270M|PPT2_uc003oaa.2_Missense_Mutation_p.R270M|PPT2_uc010jtu.1_Intron|EGFL8_uc003oac.1_5'Flank|EGFL8_uc003oab.1_5'Flank	NM_005155	NP_005146	Q9UMR5	PPT2_HUMAN	palmitoyl-protein thioesterase 2 isoform a	270					protein modification process	lysosome	palmitoyl-(protein) hydrolase activity				0						TCTATTGGCCCGGGGGGCCATA	0.54													10	620					0	0	6.4e-05	0	0
ZBTB9	221504	broad.mit.edu	37	6	33423652	33423652	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr6:33423652C>T	uc003oeq.2	+	2	1043	c.775C>T	c.(775-777)CCC>TCC	p.P259S		NM_152735	NP_689948	Q96C00	ZBTB9_HUMAN	zinc finger and BTB domain containing 9	259	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GACTGCTACTCCCCGAAAGCT	0.587													22	36					0	0	0.000720815	0	0
C6orf81	221481	broad.mit.edu	37	6	35705030	35705030	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr6:35705030T>G	uc003ola.2	+	1	172	c.145T>G	c.(145-147)TCA>GCA	p.S49A	LOC285847_uc010jvy.1_5'Flank|C6orf81_uc003olb.1_Missense_Mutation_p.S49A	NM_145028	NP_659465	Q5T9G4	CF081_HUMAN	hypothetical protein LOC221481	49							binding			ovary(1)	1						CTGTAGCAACTCACCCATCTG	0.637											OREG0017379	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	21					0	0	0.000274275	0	0
C6orf108	10591	broad.mit.edu	37	6	43193825	43193826	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr6:43193825_43193826CC>TT	uc003ouo.2	-	3	338_339	c.321_322GG>AA	c.(319-324)CGGGCC>CGAACC	p.A108T	C6orf108_uc003oup.2_Missense_Mutation_p.A108T	NM_006443	NP_006434	O43598	RCL_HUMAN	putative c-Myc-responsive isoform 1	108					cell proliferation|deoxyribonucleoside monophosphate catabolic process|positive regulation of cell growth	cytoplasm|nucleus	deoxyribonucleoside 5'-monophosphate N-glycosidase activity|nucleoside deoxyribosyltransferase activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0123)|OV - Ovarian serous cystadenocarcinoma(102;0.0531)			AAGGCCACGGCCCGGCCCAGCT	0.619													7	21					0	0	6.4e-05	0	0
GFRAL	389400	broad.mit.edu	37	6	55223928	55223928	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr6:55223928C>T	uc003pcm.1	+	6	1030	c.944C>T	c.(943-945)TCA>TTA	p.S315L		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	315	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CATAGAAAATCATGTTTCAGT	0.284													15	28					0	0	0.000308642	0	0
HTR1E	3354	broad.mit.edu	37	6	87725312	87725312	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr6:87725312G>A	uc003pli.2	+	2	963	c.260G>A	c.(259-261)CGC>CAC	p.R87H		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	87	Extracellular (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	GTCATGGATCGCTGGAAGCTT	0.572													23	53					0	0	0.000720815	0	0
ENPP3	5169	broad.mit.edu	37	6	131973708	131973708	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr6:131973708C>T	uc003qcu.3	+	5	651	c.304C>T	c.(304-306)CGT>TGT	p.R102C	ENPP3_uc010kfn.1_RNA|ENPP3_uc011ecc.1_Missense_Mutation_p.R68C|ENPP3_uc010kfo.1_RNA|ENPP3_uc010kfp.1_RNA|ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Missense_Mutation_p.R102C	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	102	Extracellular (Potential).|SMB 2.				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		CAATAAATTTCGTTGTGGAGA	0.378													10	43					0	0	0.000151284	0	0
SHPRH	257218	broad.mit.edu	37	6	146264611	146264611	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr6:146264611G>A	uc003qlf.2	-	9	2305	c.1906C>T	c.(1906-1908)CTA>TTA	p.L636L	SHPRH_uc003qld.2_Silent_p.L636L|SHPRH_uc003qle.2_Silent_p.L636L|SHPRH_uc003qlg.1_Silent_p.L192L|SHPRH_uc003qlj.1_Silent_p.L525L	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	636					DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		GCATGATTTAGAGATTCAGCA	0.393													11	53					0	0	0.000673444	0	0
RSPH3	83861	broad.mit.edu	37	6	159403528	159403528	+	Silent	SNP	G	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr6:159403528G>T	uc003qrx.2	-	5	1301	c.1111C>A	c.(1111-1113)CGA>AGA	p.R371R	RSPH3_uc010kju.2_Silent_p.R275R|RSPH3_uc003qry.1_Silent_p.R371R	NM_031924	NP_114130	Q86UC2	RSPH3_HUMAN	radial spoke 3 homolog	371	Potential.									ovary(1)|skin(1)	2		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;2.36e-16)|BRCA - Breast invasive adenocarcinoma(81;5.92e-06)		TTTTCTTCTCGGTGTCGCCTC	0.383													5	41					0.000602214	0.00663565	0.000602214	1	0
RPS6KA2	6196	broad.mit.edu	37	6	166923790	166923790	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr6:166923790G>A	uc003qvb.1	-	4	573	c.354C>T	c.(352-354)CAC>CAT	p.H118H	RPS6KA2_uc011ego.1_Silent_p.H29H|RPS6KA2_uc010kkl.1_Silent_p.H29H|RPS6KA2_uc003qvc.1_Silent_p.H126H|RPS6KA2_uc003qvd.1_Silent_p.H143H|MIR1913_hsa-mir-1913|MI0008334_5'Flank	NM_021135	NP_066958	Q15349	KS6A2_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	118	Protein kinase 1.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8		Breast(66;2.04e-05)|Ovarian(120;0.0652)|Prostate(117;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.76e-18)|GBM - Glioblastoma multiforme(31;9.94e-06)|BRCA - Breast invasive adenocarcinoma(81;1.36e-05)		CAATGAAGGGGTGATTCACTT	0.408													10	29					0	0	0.000442599	0	0
TCP10L2	401285	broad.mit.edu	37	6	167592601	167592601	+	Missense_Mutation	SNP	G	A	A	rs116848674	by1000genomes	TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr6:167592601G>A	uc010kkp.2	+	6	891	c.760G>A	c.(760-762)GGA>AGA	p.G254R		NM_001145121	NP_001138593	B9ZVM9	B9ZVM9_HUMAN	t-complex 10-like 2	254											0						GGCAGCAGCCGGAGTTGCTGG	0.577													3	13					0	0	0.00024832	0	0
TCP10L2	401285	broad.mit.edu	37	6	167592605	167592606	+	Missense_Mutation	DNP	TT	GA	GA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr6:167592605_167592606TT>GA	uc010kkp.2	+	6	895_896	c.764_765TT>GA	c.(763-765)GTT>GGA	p.V255G		NM_001145121	NP_001138593	B9ZVM9	B9ZVM9_HUMAN	t-complex 10-like 2	255											0						GCAGCCGGAGTTGCTGGTGAGC	0.579													3	12					0	0	6.4e-05	0	0
RADIL	55698	broad.mit.edu	37	7	4874717	4874717	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:4874717C>T	uc003snj.1	-	4	1110	c.937G>A	c.(937-939)GGG>AGG	p.G313R	RADIL_uc003sng.1_RNA|RADIL_uc003sni.1_5'Flank|RADIL_uc011jwc.1_Missense_Mutation_p.G73R|RADIL_uc011jwd.1_RNA	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	313					cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		ACCAGCCTCCCCGCGGCCTGG	0.701													3	11					0	0	0.00024832	0	0
DNAH11	8701	broad.mit.edu	37	7	21892165	21892165	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:21892165G>A	uc003svc.2	+	68	11029	c.10998G>A	c.(10996-10998)GCG>GCA	p.A3666A		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3666	AAA 5 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GCCTTTCTGCGGCAGAGGGAA	0.448									Kartagener_syndrome				37	72					0	0	0.000692331	0	0
OSBPL3	26031	broad.mit.edu	37	7	24932067	24932067	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:24932067C>T	uc003sxf.2	-	2	430	c.25G>A	c.(25-27)GGT>AGT	p.G9S	OSBPL3_uc003sxd.2_RNA|OSBPL3_uc003sxe.2_RNA|OSBPL3_uc003sxg.2_Missense_Mutation_p.G9S|OSBPL3_uc003sxh.2_Missense_Mutation_p.G9S|OSBPL3_uc003sxi.2_Missense_Mutation_p.G9S	NM_015550	NP_056365	Q9H4L5	OSBL3_HUMAN	oxysterol-binding protein-like protein 3 isoform	9					lipid transport		lipid binding|protein binding			skin(1)	1						TGGGACACACCAAGGTTCTTC	0.448													20	53					0	0	0.000132079	0	0
GLI3	2737	broad.mit.edu	37	7	42011936	42011936	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:42011936C>T	uc011kbh.1	-	13	2194	c.2103G>A	c.(2101-2103)ATG>ATA	p.M701I	GLI3_uc011kbg.1_Missense_Mutation_p.M642I	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	701					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						AATGACATACCATTGGCTTCT	0.542									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				63	159					0	0	0.000781405	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44805830	44805830	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:44805830C>T	uc003tlr.2	+	17	2433	c.2310C>T	c.(2308-2310)ACC>ACT	p.T770T	ZMIZ2_uc003tlq.2_Silent_p.T712T|ZMIZ2_uc003tls.2_Silent_p.T744T|ZMIZ2_uc003tlt.2_Silent_p.T393T|ZMIZ2_uc010kyj.2_Silent_p.T292T|ZMIZ2_uc003tlu.2_Silent_p.T51T|ZMIZ2_uc010kyk.1_5'Flank	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	770	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						GCACCCCAACCCTTGCTGAGT	0.637													21	40					0	0	0.000175454	0	0
TNS3	64759	broad.mit.edu	37	7	47342997	47342997	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:47342997G>A	uc003tnv.2	-	22	3375	c.3008C>T	c.(3007-3009)TCC>TTC	p.S1003F	TNS3_uc003tnw.2_Missense_Mutation_p.S1003F	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	1003						focal adhesion	protein binding			ovary(4)	4						CTCTGCTAGGGACAGCTCATG	0.677													10	23					0	0	6.40141e-05	0	0
ASL	435	broad.mit.edu	37	7	65557819	65557819	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:65557819G>T	uc003tuo.2	+	17	1426	c.1315G>T	c.(1315-1317)GCC>TCC	p.A439S	ASL_uc003tup.2_Missense_Mutation_p.A439S|ASL_uc003tur.2_Missense_Mutation_p.A413S|ASL_uc003tuq.2_Missense_Mutation_p.A419S	NM_000048	NP_000039	P04424	ARLY_HUMAN	argininosuccinate lyase isoform 1	439					arginine biosynthetic process via ornithine|arginine catabolic process|urea cycle	cytosol	argininosuccinate lyase activity			breast(2)	2					L-Arginine(DB00125)	GCAGTATGGTGCCCTGGGCGG	0.697													26	56					2.48779e-11	2.79362e-10	0.000878237	1	0
POM121	9883	broad.mit.edu	37	7	72413673	72413673	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:72413673C>T	uc003twk.2	+	11	3141	c.3141C>T	c.(3139-3141)TTC>TTT	p.F1047F	POM121_uc003twj.2_Silent_p.F782F|POM121_uc010lam.1_Silent_p.F782F	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	1047	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				CTTCGGCCTTCGGCGCTCCCG	0.647													19	48					0	0	0.000175454	0	0
MLXIPL	51085	broad.mit.edu	37	7	73008693	73008693	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:73008693C>T	uc003tyn.1	-	16	2399	c.2351G>A	c.(2350-2352)GGG>GAG	p.G784E	MLXIPL_uc003tyj.1_Missense_Mutation_p.G163E|MLXIPL_uc003tyk.1_Missense_Mutation_p.G763E|MLXIPL_uc003tyl.1_Missense_Mutation_p.G782E|MLXIPL_uc003tym.1_Missense_Mutation_p.G765E|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_Missense_Mutation_p.G690E	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	784					anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				GGACACCATCCCGTTGAAGGA	0.642													22	44					0	0	0.000295444	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94881170	94881170	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:94881170G>A	uc003unp.2	+	10	2709	c.2427G>A	c.(2425-2427)CGG>CGA	p.R809R	PPP1R9A_uc010lfj.2_Silent_p.R831R|PPP1R9A_uc011kif.1_Silent_p.R809R|PPP1R9A_uc003unq.2_Silent_p.R809R|PPP1R9A_uc011kig.1_Silent_p.R809R	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	809	Interacts with TGN38 (By similarity).|Potential.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			TCCAAGTGCGGGTAAGTTGTG	0.383										HNSCC(28;0.073)			8	58					0	0	0.000274275	0	0
MUC17	140453	broad.mit.edu	37	7	100684926	100684927	+	Missense_Mutation	DNP	CG	AT	AT	rs139132060	byFrequency	TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:100684926_100684927CG>AT	uc003uxp.1	+	3	10282_10283	c.10229_10230CG>AT	c.(10228-10230)CCG>CAT	p.P3410H	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3410	Extracellular (Potential).|55.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AGCACCACGCCGGTGGTCAGTT	0.5													10	426					0	0	6.4e-05	0	0
LAMB4	22798	broad.mit.edu	37	7	107756507	107756507	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:107756507G>A	uc010ljo.1	-	3	218	c.134C>T	c.(133-135)GCT>GTT	p.A45V	LAMB4_uc003vey.2_Missense_Mutation_p.A45V	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	45	Laminin N-terminal.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						GGTAGAAGAAGCCATAAGCTG	0.512													24	102					0	0	0.000375601	0	0
MET	4233	broad.mit.edu	37	7	116412001	116412001	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:116412001G>A	uc003vij.2	+	14	3173	c.2986G>A	c.(2986-2988)GTT>ATT	p.V996I	MET_uc010lkh.2_Missense_Mutation_p.V1014I|MET_uc011knj.1_Missense_Mutation_p.V566I	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	996	Cytoplasmic (Potential).				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding	p.L982_D1028del(3)|p.D981_D1028del(1)|p.982_1028del47(1)		upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			TACAGAAATGGTTTCAAATGA	0.408			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				11	50					0	0	0.000151284	0	0
KCND2	3751	broad.mit.edu	37	7	120387884	120387884	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:120387884G>A	uc003vjj.1	+	6	2830	c.1865G>A	c.(1864-1866)GGA>GAA	p.G622E		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	622	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TACTCAGGAGGAAATATTGTC	0.423													5	28					0	0	3.59834e-05	0	0
GRM8	2918	broad.mit.edu	37	7	126544699	126544699	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:126544699C>T	uc003vlr.2	-	3	1077	c.766G>A	c.(766-768)GAA>AAA	p.E256K	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.E256K|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_5'UTR	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	256	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GGTCTTGGTTCACGTGGGATT	0.398										HNSCC(24;0.065)			41	73					0	0	0.000228196	0	0
FAM71F2	346653	broad.mit.edu	37	7	128315743	128315743	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:128315743G>A	uc003vnk.3	+	2	301	c.195G>A	c.(193-195)GGG>GGA	p.G65G	FAM71F2_uc010llm.1_Silent_p.G56G|FAM71F2_uc003vnl.2_RNA|FAM71F2_uc010lln.1_RNA	NM_001012454	NP_001012457	Q6NXP2	F71F2_HUMAN	hypothetical protein LOC346653 isoform a	65											0						CTAAGCCCGGGAACTGGAGAG	0.557													7	29					0	0	0.000274275	0	0
FLNC	2318	broad.mit.edu	37	7	128485004	128485004	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:128485004G>A	uc003vnz.3	+	21	3694	c.3485G>A	c.(3484-3486)GGA>GAA	p.G1162E	FLNC_uc003voa.3_Missense_Mutation_p.G1162E	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1162	Filamin 10.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CGGGCCAGTGGACCGGGCCTG	0.622													16	43					0	0	0.000422831	0	0
TSGA14	95681	broad.mit.edu	37	7	130039973	130039974	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:130039973_130039974GG>TT	uc003vpz.2	-	10	926_927	c.879_880CC>AA	c.(877-882)CCCCTA>CCAATA	p.L294I	TSGA14_uc003vpy.2_Missense_Mutation_p.L56I|TSGA14_uc010lmf.2_Missense_Mutation_p.L91I|TSGA14_uc003vqa.2_Intron|TSGA14_uc011kpg.1_Intron	NM_018718	NP_061188	Q9BYV8	CEP41_HUMAN	testis specific, 14	294					G2/M transition of mitotic cell cycle	centrosome|cytosol					0	Melanoma(18;0.0435)					TCAGCTGGTAGGGGTGGCCCTT	0.505													12	643					0	0	6.4e-05	0	0
MEST	4232	broad.mit.edu	37	7	130137004	130137005	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:130137004_130137005GG>TT	uc003vqg.2	+	3	406_407	c.189_190GG>TT	c.(187-192)GTGGGT>GTTTGT	p.G64C	MEST_uc003vqc.2_Missense_Mutation_p.G55C|MEST_uc003vqd.2_Missense_Mutation_p.G55C|MEST_uc003vqf.2_Missense_Mutation_p.G55C|MEST_uc011kph.1_Missense_Mutation_p.G50C|MEST_uc010lmg.2_Missense_Mutation_p.G64C	NM_002402	NP_002393	Q5EB52	MEST_HUMAN	mesoderm specific transcript isoform a	64	Helical; (Potential).				mesoderm development	endoplasmic reticulum membrane|integral to membrane	hydrolase activity|protein binding			ovary(2)	2	Melanoma(18;0.0435)					TAGACTCTGTGGGTGTGGTTGG	0.386													11	614					0	0	6.4e-05	0	0
KIAA1549	57670	broad.mit.edu	37	7	138601867	138601867	+	Silent	SNP	A	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:138601867A>G	uc011kql.1	-	2	2554	c.2505T>C	c.(2503-2505)GGT>GGC	p.G835G	KIAA1549_uc003vuk.3_Silent_p.G785G|KIAA1549_uc011kqj.1_Silent_p.G835G	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	835						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						TCAACACCGTACCAGTGGGAA	0.547			O	BRAF	pilocytic astrocytoma								14	25					0	0	0.000151284	0	0
DENND2A	27147	broad.mit.edu	37	7	140285496	140285496	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:140285496C>T	uc010lnj.2	-	3	1283	c.1138G>A	c.(1138-1140)GAG>AAG	p.E380K	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Missense_Mutation_p.E380K|DENND2A_uc003vvw.2_Missense_Mutation_p.E380K|DENND2A_uc003vvx.2_Missense_Mutation_p.E380K	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	380										ovary(3)|breast(1)	4	Melanoma(164;0.00956)					TAAGGGTTCTCCTTCATTGGC	0.483													31	133					0	0	0.000692331	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				28	61					0	0	0.000147802	0	0
C7orf33	202865	broad.mit.edu	37	7	148311286	148311286	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:148311286C>T	uc003wew.2	+	2	718	c.357C>T	c.(355-357)GGC>GGT	p.G119G		NM_145304	NP_660347	Q8WU49	CG033_HUMAN	hypothetical protein LOC202865	119										central_nervous_system(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			CCAGGATGGGCTTGTCCTCAG	0.522													15	38					0	0	0.000308642	0	0
KCNH2	3757	broad.mit.edu	37	7	150644006	150644006	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr7:150644006C>T	uc003wic.2	-	14	3302	c.3289G>A	c.(3289-3291)GTC>ATC	p.V1097I	KCNH2_uc003wib.2_Missense_Mutation_p.V757I|KCNH2_uc011kux.1_Missense_Mutation_p.V1001I	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	1097	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	AGGGGGCTGACGGGCAACAGC	0.657													25	42					0	0	0.000720815	0	0
DLGAP2	9228	broad.mit.edu	37	8	1624770	1624770	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:1624770G>A	uc003wpl.2	+	8	2131	c.2034G>A	c.(2032-2034)GTG>GTA	p.V678V	DLGAP2_uc003wpm.2_Silent_p.V664V	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	757					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		GGGTGCAAGTGGAAGATGAGA	0.567													3	9					0	0	0.00024832	0	0
CSMD1	64478	broad.mit.edu	37	8	2830723	2830723	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:2830723C>T	uc011kwk.1	-	57	9232	c.8842G>A	c.(8842-8844)GAA>AAA	p.E2948K	CSMD1_uc011kwj.1_Missense_Mutation_p.E2277K|CSMD1_uc010lrg.2_Missense_Mutation_p.E958K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2948	Extracellular (Potential).|Sushi 22.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGCCCCATTTCACAGGAGAAG	0.557													34	80					0	0	0.000491102	0	0
CSMD1	64478	broad.mit.edu	37	8	2836224	2836224	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:2836224G>A	uc011kwk.1	-	55	8869	c.8479C>T	c.(8479-8481)CAT>TAT	p.H2827Y	CSMD1_uc011kwj.1_Missense_Mutation_p.H2156Y|CSMD1_uc010lrg.2_Missense_Mutation_p.H837Y	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2827	Extracellular (Potential).|Sushi 20.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTCTTGCAATGGTACAGGATA	0.478													9	16					0	0	0.000442599	0	0
XKR6	286046	broad.mit.edu	37	8	10756188	10756188	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:10756188C>T	uc003wtk.1	-	3	1227	c.1200G>A	c.(1198-1200)TGG>TGA	p.W400*		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	400						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		CATGGATGATCCAGAAGGCCA	0.502													13	52					0	0	0.000151284	0	0
ADAM7	8756	broad.mit.edu	37	8	24333986	24333986	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:24333986G>A	uc003xeb.2	+	8	787	c.674G>A	c.(673-675)CGA>CAA	p.R225Q	ADAM7_uc003xec.2_5'UTR	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	225	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		CTAAGGAACCGAATTTGGGGA	0.323													14	37					0	0	0.00074312	0	0
ADAM7	8756	broad.mit.edu	37	8	24359024	24359024	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:24359024G>A	uc003xeb.2	+	20	2256	c.2143G>A	c.(2143-2145)GGA>AGA	p.G715R	ADAM7_uc003xec.2_Missense_Mutation_p.G487R	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	715	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		GGAGAACAAAGGATACTTTGG	0.323													21	71					0	0	0.000184323	0	0
EBF2	64641	broad.mit.edu	37	8	25747344	25747344	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:25747344C>T	uc003xes.1	-	8	692	c.675G>A	c.(673-675)CTG>CTA	p.L225L	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_5'Flank	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	225					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		CAGAAACAGCCAGGACGTGTC	0.463													22	56					0	0	0.000229342	0	0
STMN4	81551	broad.mit.edu	37	8	27098744	27098744	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:27098744C>A	uc003xfk.2	-	4	259	c.145G>T	c.(145-147)GAC>TAC	p.D49Y	STMN4_uc003xfj.2_Missense_Mutation_p.D76Y|STMN4_uc011lai.1_Missense_Mutation_p.D76Y|STMN4_uc011laj.1_Missense_Mutation_p.D40Y|STMN4_uc011lak.1_Missense_Mutation_p.D76Y|STMN4_uc010luo.2_Missense_Mutation_p.D49Y			Q9H169	STMN4_HUMAN	RecName: Full=Stathmin-4; AltName: Full=Stathmin-like protein B3;          Short=RB3;	49					intracellular signal transduction					large_intestine(1)|pancreas(1)	2		Ovarian(32;0.00167)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0214)|Epithelial(17;9.82e-10)|Colorectal(74;0.142)		ACTTCCATGTCGGAAATGACG	0.557													13	52					0.000219431	0.00243818	0.000219431	1	0
GTF2E2	2961	broad.mit.edu	37	8	30437825	30437825	+	Silent	SNP	G	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:30437825G>C	uc003xig.2	-	7	985	c.732C>G	c.(730-732)TCC>TCG	p.S244S		NM_002095	NP_002086	P29084	T2EB_HUMAN	general transcription factor IIE, polypeptide 2,	244					regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	transcription factor TFIIE complex	DNA binding|protein binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.113)|Kidney(114;0.135)		ATTCCTGCATGGAAGAAATAC	0.463													3	67					0	0	6.4e-05	0	0
DUSP26	78986	broad.mit.edu	37	8	33454934	33454934	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:33454934C>T	uc003xjp.2	-	2	433	c.100G>A	c.(100-102)GAG>AAG	p.E34K	DUSP26_uc003xjq.2_Missense_Mutation_p.E34K	NM_024025	NP_076930	Q9BV47	DUS26_HUMAN	dual specificity phosphatase 26	34						Golgi apparatus|nucleus	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0				KIRC - Kidney renal clear cell carcinoma(67;0.0918)|Kidney(114;0.111)		GTTGGCATCTCCTCCAGGGTC	0.557													14	39					0	0	0.000566183	0	0
ADAM32	203102	broad.mit.edu	37	8	39022299	39022299	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:39022299C>T	uc003xmt.3	+	8	856	c.611C>T	c.(610-612)TCT>TTT	p.S204F	ADAM32_uc011lch.1_Missense_Mutation_p.S211F|ADAM32_uc003xmu.3_Missense_Mutation_p.S204F	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	204	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			TACTGGGGCTCTGATAGCATG	0.274													18	73					0	0	0.000295444	0	0
ADAM18	8749	broad.mit.edu	37	8	39468072	39468072	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:39468072C>T	uc003xni.2	+	6	369	c.369C>T	c.(367-369)ATC>ATT	p.I123I	ADAM18_uc003xnh.2_Silent_p.I123I|ADAM18_uc010lww.2_Intron|ADAM18_uc010lwx.2_Silent_p.I123I	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	123					cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			TTGAAAATATCAGTTATGGAA	0.279													18	28					0	0	0.00074312	0	0
ANK1	286	broad.mit.edu	37	8	41552695	41552695	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:41552695C>T	uc003xok.2	-	27	3199	c.3115G>A	c.(3115-3117)GAG>AAG	p.E1039K	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.E355K|ANK1_uc003xoi.2_Missense_Mutation_p.E1039K|ANK1_uc003xoj.2_Missense_Mutation_p.E1039K|ANK1_uc003xol.2_Missense_Mutation_p.E1039K|ANK1_uc003xom.2_Missense_Mutation_p.E1080K	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1039					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CCGCCCCTACCTTCGTCCATC	0.592													46	193					0	0	0.000781405	0	0
TRIM55	84675	broad.mit.edu	37	8	67061995	67061995	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:67061995A>C	uc003xvv.2	+	5	945	c.719A>C	c.(718-720)AAA>ACA	p.K240T	TRIM55_uc003xvu.2_Missense_Mutation_p.K240T|TRIM55_uc003xvw.2_Missense_Mutation_p.K240T|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	240	Potential.					cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			CAAGAGGAGAAACTGGAACAT	0.418													14	70					0	0	0.000151284	0	0
ZFHX4	79776	broad.mit.edu	37	8	77690630	77690630	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:77690630C>T	uc003yav.2	+	4	3589	c.3202C>T	c.(3202-3204)CTC>TTC	p.L1068F	ZFHX4_uc003yau.1_Missense_Mutation_p.L1094F|ZFHX4_uc003yaw.1_Missense_Mutation_p.L1068F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1068						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GGAGGACAACCTCAGTGAGAT	0.522										HNSCC(33;0.089)			96	123					0	0	0.000781405	0	0
STMN2	11075	broad.mit.edu	37	8	80567129	80567129	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:80567129A>T	uc003ybj.2	+	4	363	c.312A>T	c.(310-312)AAA>AAT	p.K104N	STMN2_uc010lzp.2_RNA|STMN2_uc011lfn.1_Intron	NM_007029	NP_008960	Q93045	STMN2_HUMAN	superiorcervical ganglia, neural specific 10	104	Potential.				intracellular signal transduction|negative regulation of microtubule depolymerization|negative regulation of microtubule polymerization|negative regulation of neuron projection development|neuron differentiation|positive regulation of microtubule depolymerization|positive regulation of neuron projection development	axon|growth cone|membrane|membrane fraction|perinuclear region of cytoplasm|soluble fraction	protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(9;8.34e-05)		Epithelial(68;0.0229)|all cancers(69;0.0874)			AGGTGCTGAAACAATTGGCAG	0.483													9	20					0	0	0.000442599	0	0
RIPK2	8767	broad.mit.edu	37	8	90782122	90782122	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:90782122A>C	uc003yee.2	+	4	920	c.606A>C	c.(604-606)CAA>CAC	p.Q202H	RIPK2_uc003yef.2_Missense_Mutation_p.Q65H	NM_003821	NP_003812	O43353	RIPK2_HUMAN	receptor-interacting serine-threonine kinase 2	202	Protein kinase.				activation of MAPK activity|anti-apoptosis|apoptosis|inflammatory response|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein ubiquitination|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|CARD domain binding|LIM domain binding|protein homodimerization activity|protein serine/threonine kinase activity|signal transducer activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.0474)			AACCTGGACAAAAATCAAGGG	0.418													16	191					0	0	0.000308642	0	0
TP53INP1	94241	broad.mit.edu	37	8	95942782	95942783	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:95942782_95942783CC>AA	uc003yhg.2	-	4	1031_1032	c.647_648GG>TT	c.(646-648)AGG>ATT	p.R216I	C8orf38_uc003yhe.1_Intron|C8orf38_uc003yhf.2_Intron|TP53INP1_uc003yhh.2_3'UTR	NM_033285	NP_150601	Q96A56	T53I1_HUMAN	tumor protein p53 inducible nuclear protein 1	216					apoptosis	PML body					0	Breast(36;8.75e-07)					GGTGGCAATCCCTGGTAAGATT	0.475													15	848					0	0	6.4e-05	0	0
VPS13B	157680	broad.mit.edu	37	8	100654394	100654394	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:100654394T>C	uc003yiv.2	+	34	5762	c.5651T>C	c.(5650-5652)GTT>GCT	p.V1884A	VPS13B_uc003yiw.2_Missense_Mutation_p.V1859A	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1884					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			GATTCAGATGTTGCTAAGCCC	0.398													102	104					0	0	0.000781405	0	0
RGS22	26166	broad.mit.edu	37	8	100975164	100975164	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:100975164C>T	uc003yjb.1	-	25	3853	c.3658G>A	c.(3658-3660)GAG>AAG	p.E1220K	RGS22_uc003yja.1_Missense_Mutation_p.E1039K|RGS22_uc003yjc.1_Missense_Mutation_p.E1208K	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	1220					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			AGAATTCTCTCCTGTTCTAAG	0.313													8	69					0	0	0.000442599	0	0
DPYS	1807	broad.mit.edu	37	8	105441912	105441912	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:105441912C>T	uc003yly.3	-	5	940	c.811G>A	c.(811-813)GAA>AAA	p.E271K		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	271					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			GCTATGGGTTCACCATAGACC	0.418													43	47					0	0	0.000680045	0	0
ZFPM2	23414	broad.mit.edu	37	8	106573624	106573624	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:106573624G>A	uc003ymd.2	+	4	358	c.335G>A	c.(334-336)CGA>CAA	p.R112Q		NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	112					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GATGGGGAACGAAAAATTCAG	0.438													36	40					0	0	0.000270559	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815700	106815700	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:106815700C>T	uc003ymd.2	+	8	3413	c.3390C>T	c.(3388-3390)AAC>AAT	p.N1130N	ZFPM2_uc011lhs.1_Silent_p.N861N	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	1130	C2HC-type 5.				blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AGTTCAACAACCTTTCAAACT	0.408													12	29					0	0	6.40141e-05	0	0
SLC30A8	169026	broad.mit.edu	37	8	118183329	118183330	+	Missense_Mutation	DNP	GG	TT	TT	rs139489847		TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:118183329_118183330GG>TT	uc003yoh.2	+	7	1116_1117	c.886_887GG>TT	c.(886-888)GGG>TTG	p.G296L	SLC30A8_uc010mcz.2_Missense_Mutation_p.G247L|SLC30A8_uc011lia.1_Missense_Mutation_p.G247L|SLC30A8_uc003yog.2_Missense_Mutation_p.G247L	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	296	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			AGCAGTCGACGGGGTGCTGTCT	0.45													18	769					0	0	6.4e-05	0	0
COL14A1	7373	broad.mit.edu	37	8	121259933	121259933	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:121259933C>T	uc003yox.2	+	21	2826	c.2561C>T	c.(2560-2562)TCC>TTC	p.S854F	COL14A1_uc003yoy.2_Missense_Mutation_p.S532F	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	854	Fibronectin type-III 7.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CCCCCATCTTCCCCGGTGAAA	0.453													20	109					0	0	0.000295444	0	0
ADCY8	114	broad.mit.edu	37	8	131826344	131826344	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:131826344G>A	uc003ytd.3	-	14	3140	c.2884C>T	c.(2884-2886)CAT>TAT	p.H962Y	ADCY8_uc010mds.2_Missense_Mutation_p.H831Y	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	962	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TCTAGGAAATGGCGGGCCACA	0.527										HNSCC(32;0.087)			64	65					0	0	0.000781405	0	0
ST3GAL1	6482	broad.mit.edu	37	8	134475675	134475675	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:134475675G>A	uc003yuk.2	-	8	1540	c.711C>T	c.(709-711)ATC>ATT	p.I237I	ST3GAL1_uc003yum.2_Silent_p.I237I	NM_173344	NP_775479	Q11201	SIA4A_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	237	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,3-sialyltransferase activity				0	all_epithelial(106;1.53e-23)|Lung NSC(106;3.15e-07)|all_lung(105;1.26e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.00721)			GTTTCACTCTGATCTTTGCAG	0.557													61	54					0	0	0.000781405	0	0
FAM135B	51059	broad.mit.edu	37	8	139144977	139144977	+	Silent	SNP	A	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:139144977A>C	uc003yuy.2	-	20	4251	c.4080T>G	c.(4078-4080)ACT>ACG	p.T1360T	FAM135B_uc003yux.2_Silent_p.T1261T|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1360										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GTCGGATTAAAGTGCAGTCCT	0.547										HNSCC(54;0.14)			22	394					0	0	0.000375601	0	0
COL22A1	169044	broad.mit.edu	37	8	139890260	139890260	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr8:139890260G>A	uc003yvd.2	-	3	838	c.391C>T	c.(391-393)CCA>TCA	p.P131S		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	131	VWFA.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CCGGCGTGTGGGGAGAAGCTG	0.736										HNSCC(7;0.00092)			4	8					0	0	3.59834e-05	0	0
RUSC2	9853	broad.mit.edu	37	9	35556373	35556374	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr9:35556373_35556374CC>TT	uc003zww.2	+	5	3166_3167	c.2911_2912CC>TT	c.(2911-2913)CCT>TTT	p.P971F	RUSC2_uc010mkq.2_RNA|RUSC2_uc003zwx.3_Missense_Mutation_p.P971F	NM_014806	NP_055621	Q8N2Y8	RUSC2_HUMAN	RUN and SH3 domain containing 2	971						cytosol				ovary(1)	1			Lung(28;0.000837)|LUSC - Lung squamous cell carcinoma(32;0.00109)|STAD - Stomach adenocarcinoma(86;0.194)			GACGGAGAAGCCTCCAGCTGAG	0.53													19	42					0	0	6.4e-05	0	0
TESK1	7016	broad.mit.edu	37	9	35607612	35607613	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr9:35607612_35607613GG>AA	uc003zxa.2	+	6	990_991	c.654_655GG>AA	c.(652-657)GTGGGC>GTAAGC	p.G219S	TESK1_uc003zwz.1_RNA|TESK1_uc010mks.2_Missense_Mutation_p.G59S	NM_006285	NP_006276	Q15569	TESK1_HUMAN	testis-specific protein kinase 1	219	Protein kinase.				cell junction assembly|spermatogenesis	cytosol	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|breast(2)|lung(1)|ovary(1)|skin(1)	7			Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TGGCCGTGGTGGGCTCCCCATA	0.599													20	43					0	0	6.4e-05	0	0
C9orf79	286234	broad.mit.edu	37	9	90502618	90502618	+	Silent	SNP	C	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr9:90502618C>A	uc004app.3	+	4	3251	c.3216C>A	c.(3214-3216)ACC>ACA	p.T1072T		NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	1072						integral to membrane				ovary(3)	3						CTCTGGGGACCACTGGTAACC	0.587													35	48					4.14481e-20	4.66423e-19	0.000228196	1	0
ECM2	1842	broad.mit.edu	37	9	95277109	95277109	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr9:95277109C>T	uc004ash.2	-	4	923	c.858G>A	c.(856-858)GAG>GAA	p.E286E	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ECM2_uc004asf.3_Silent_p.E264E|ECM2_uc011lty.1_Silent_p.E286E|ECM2_uc004asg.2_Silent_p.E264E	NM_001393	NP_001384	O94769	ECM2_HUMAN	extracellular matrix protein 2 precursor	286					cell-matrix adhesion		integrin binding			ovary(1)|skin(1)	2						cctcgtcctcctcatcctcct	0.423													19	30					0	0	0.000132079	0	0
IPPK	64768	broad.mit.edu	37	9	95400563	95400563	+	Splice_Site	SNP	C	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr9:95400563C>G	uc004asl.1	-	9	914	c.637_splice	c.e9-1	p.N213_splice	IPPK_uc004ask.1_5'Flank	NM_022755	NP_073592	Q9H8X2	IPPK_HUMAN	inositol 1,3,4,5,6-pentakisphosphate 2-kinase						inositol or phosphatidylinositol phosphorylation	cytoplasm|nucleus	ATP binding|inositol pentakisphosphate 2-kinase activity			ovary(2)	2						GCTCACCATTCTTCAGACAGG	0.552													23	31					0	0	0.000586117	0	0
FOXE1	2304	broad.mit.edu	37	9	100616457	100616457	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr9:100616457C>T	uc004axu.2	+	1	921	c.261C>T	c.(259-261)TTC>TTT	p.F87F		NM_004473	NP_004464	O00358	FOXE1_HUMAN	forkhead box E1	87	Fork-head.				cell migration|embryonic organ morphogenesis|hair follicle morphogenesis|hard palate development|lens morphogenesis in camera-type eye|negative regulation of transcription from RNA polymerase II promoter|pattern specification process|peripheral nervous system development|pharynx development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|soft palate development|thymus development|thyroid gland development|thyroid hormone generation	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		Acute lymphoblastic leukemia(62;0.158)				CCGAGCGCTTCCCCTTCTACC	0.647													11	32					0	0	0.000673444	0	0
MUSK	4593	broad.mit.edu	37	9	113449463	113449463	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr9:113449463C>G	uc004bey.2	+	3	371	c.273C>G	c.(271-273)GAC>GAG	p.D91E	MUSK_uc004bex.2_Missense_Mutation_p.D91E	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	91	Ig-like 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						GTGTGGAAGACAGTGATGATG	0.522													19	115					0	0	0.000958276	0	0
TRIM32	22954	broad.mit.edu	37	9	119461791	119461791	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr9:119461791C>T	uc004bjx.2	+	2	1928	c.1770C>T	c.(1768-1770)ATC>ATT	p.I590I	ASTN2_uc004bjr.1_Intron|ASTN2_uc004bjs.1_Intron|ASTN2_uc004bjt.1_Intron|TRIM32_uc004bjw.2_Silent_p.I590I	NM_001099679	NP_001093149	Q13049	TRI32_HUMAN	tripartite motif-containing 32	590	NHL 4.				fat cell differentiation|innate immune response|negative regulation of apoptosis|negative regulation of fibroblast proliferation|positive regulation of cell cycle|positive regulation of cell growth|positive regulation of cell migration|positive regulation of neurogenesis|positive regulation of neuron differentiation|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein catabolic process|positive regulation of proteolysis|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to tumor necrosis factor|response to UV	nucleus	myosin binding|protein self-association|RNA binding|Tat protein binding|transcription coactivator activity|translation initiation factor binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(2)|kidney(1)	3						GTGATCTCATCGTGGCTGACA	0.537									Bardet-Biedl_syndrome				28	36					0	0	0.000184323	0	0
SETX	23064	broad.mit.edu	37	9	135172314	135172314	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr9:135172314G>A	uc004cbk.2	-	14	6092	c.5909C>T	c.(5908-5910)TCA>TTA	p.S1970L	SETX_uc004cbj.2_Missense_Mutation_p.S1589L|SETX_uc010mzt.2_Missense_Mutation_p.S1589L	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	1970	ATP (Potential).				cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		AATAGTTTTTGATTTTCCTGT	0.413													29	31					0	0	0.000409698	0	0
CXorf23	256643	broad.mit.edu	37	X	19983691	19983691	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:19983691C>T	uc004czp.2	-	3	745	c.745G>A	c.(745-747)GAG>AAG	p.E249K	CXorf23_uc010nfn.2_RNA|CXorf23_uc011mjg.1_5'UTR|CXorf23_uc004czo.2_Missense_Mutation_p.E199K	NM_198279	NP_938020	A2AJT9	CX023_HUMAN	hypothetical protein LOC256643	249						mitochondrion				lung(1)|skin(1)	2						TCTGTGTCCTCTTGGTAAGGT	0.507													8	70					0	0	0.000274275	0	0
MAP7D2	256714	broad.mit.edu	37	X	20062573	20062573	+	Missense_Mutation	SNP	C	T	T	rs141115910	byFrequency	TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:20062573C>T	uc004czr.1	-	6	684	c.665G>A	c.(664-666)CGA>CAA	p.R222Q	MAP7D2_uc004czq.1_Missense_Mutation_p.R107Q|MAP7D2_uc011mji.1_Missense_Mutation_p.R170Q|MAP7D2_uc010nfo.1_Missense_Mutation_p.R263Q|MAP7D2_uc011mjj.1_Missense_Mutation_p.R177Q	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	222										ovary(2)|breast(1)	3						CTCAATGTTTCGAGTGGGTGA	0.458													16	147					0	0	0.00074312	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29973353	29973353	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:29973353G>A	uc004dby.2	+	11	2015	c.1507G>A	c.(1507-1509)GGA>AGA	p.G503R		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	503	Cytoplasmic (Potential).|TIR.				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						GCTTGTGACTGGAGAAATTAA	0.453													17	51					0	0	0.00074312	0	0
FAM47C	442444	broad.mit.edu	37	X	37029343	37029343	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:37029343G>A	uc004ddl.1	+	1	2874	c.2860G>A	c.(2860-2862)GAT>AAT	p.D954N		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	954										ovary(3)	3						GCTAAGAAGTGATGAACCTTT	0.438													15	133					0	0	0.000566183	0	0
DLG3	1741	broad.mit.edu	37	X	69719869	69719869	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:69719869C>T	uc004dyi.1	+	16	2443	c.2115C>T	c.(2113-2115)AGC>AGT	p.S705S	DLG3_uc004dyj.1_Silent_p.S400S|DLG3_uc011mpn.1_Silent_p.S253S	NM_021120	NP_066943	Q92796	DLG3_HUMAN	synapse-associated protein 102 isoform a	705	Guanylate kinase-like.				axon guidance|negative regulation of cell proliferation|synaptic transmission	plasma membrane	guanylate kinase activity			large_intestine(1)|pancreas(1)	2	Renal(35;0.156)					ATGGGACCAGCATCCAGTCAG	0.493													7	48					0	0	0.000157383	0	0
TEX11	56159	broad.mit.edu	37	X	69945158	69945158	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:69945158C>T	uc004dyl.2	-	13	1086	c.924G>A	c.(922-924)ATG>ATA	p.M308I	TEX11_uc004dyk.2_5'Flank|TEX11_uc004dym.2_Missense_Mutation_p.M293I	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	308							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					AGAGGATTTTCATTTTTAAGA	0.308													31	96					0	0	0.000814825	0	0
XIST	7503	broad.mit.edu	37	X	73064629	73064629	+	RNA	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:73064629G>A	uc004ebm.1	-	1		c.7960C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						TTATTCAGATGAGATAGGCCG	0.458													27	55					0	0	0.000878237	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963631	73963631	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:73963631G>A	uc004eby.2	-	3	1378	c.761C>T	c.(760-762)TCC>TTC	p.S254F		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	254					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						ATCCTGATTGGAATTTGCAAG	0.403													19	134					0	0	0.000958276	0	0
Unknown	0	broad.mit.edu	37	X	80185722	80185722	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:80185722G>A	uc004eec.1	+	1	795	c.621G>A	c.(619-621)CTG>CTA	p.L207L						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;																		ACTCCAGCCTGATAGGTTTAG	0.502													26	60					0	0	0.000878237	0	0
KLHL4	56062	broad.mit.edu	37	X	86880700	86880701	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:86880700_86880701CC>TT	uc004efb.2	+	6	1410_1411	c.1228_1229CC>TT	c.(1228-1230)CCT>TTT	p.P410F	KLHL4_uc004efa.2_Missense_Mutation_p.P410F	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	410						cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						TCATCTTTTGCCTGAGAGAAGA	0.436													6	33					0	0	6.4e-05	0	0
BTK	695	broad.mit.edu	37	X	100613678	100613678	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:100613678C>T	uc004ehg.2	-	11	1094	c.901G>A	c.(901-903)GAA>AAA	p.E301K	BTK_uc004ehf.2_5'Flank|BTK_uc010nnh.2_5'Flank|BTK_uc010nni.2_5'Flank|BTK_uc004ehe.2_5'Flank|BTK_uc010nnj.2_5'Flank|BTK_uc010nnk.2_5'Flank|BTK_uc010nnl.2_5'Flank|BTK_uc010nnm.2_5'Flank|BTK_uc010nnn.2_Missense_Mutation_p.E301K|BTK_uc010nno.2_Missense_Mutation_p.E335K|BTK_uc004ehh.1_5'Flank|BTK_uc004ehi.2_Missense_Mutation_p.E301K	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	301	SH2.				calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding			lung(3)|central_nervous_system(2)|ovary(1)	6						AAACCTCCTTCTTTCCCCTGA	0.473									Agammaglobulinemia_X-linked				23	123					0	0	0.000295444	0	0
ODZ1	10178	broad.mit.edu	37	X	123518064	123518064	+	Silent	SNP	G	A	A			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:123518064G>A	uc004euj.2	-	29	6760	c.6696C>T	c.(6694-6696)GGC>GGT	p.G2232G	ODZ1_uc011muj.1_Silent_p.G2238G|ODZ1_uc010nqy.2_Silent_p.G2239G	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2232	YD 20.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TCTGCAGCAGGCCATTAGAAT	0.463													17	55					0	0	0.000422831	0	0
ODZ1	10178	broad.mit.edu	37	X	123699397	123699397	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:123699397C>T	uc004euj.2	-	12	2155	c.2091G>A	c.(2089-2091)ATG>ATA	p.M697I	ODZ1_uc011muj.1_Missense_Mutation_p.M696I|ODZ1_uc010nqy.2_Missense_Mutation_p.M697I	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	697	Extracellular (Potential).|EGF-like 6.				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TACCACACTCCATGGTACACA	0.408													8	42					0	0	0.000157383	0	0
ODZ1	10178	broad.mit.edu	37	X	123870902	123870902	+	Silent	SNP	G	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:123870902G>T	uc004euj.2	-	4	745	c.681C>A	c.(679-681)CCC>CCA	p.P227P	ODZ1_uc011muj.1_Silent_p.P227P|ODZ1_uc010nqy.2_Silent_p.P227P	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	227	Teneurin N-terminal.|Cytoplasmic (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CAGCTGGGCTGGGCTGGCTGC	0.607													23	129					1.03073e-24	1.16735e-23	0.000586117	1	0
ZNF449	203523	broad.mit.edu	37	X	134494271	134494271	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:134494271C>T	uc004eys.2	+	5	992	c.827C>T	c.(826-828)CCC>CTC	p.P276L	ZNF449_uc004eyt.2_Missense_Mutation_p.P156L|ZNF449_uc004eyu.2_Missense_Mutation_p.P82L	NM_152695	NP_689908	Q6P9G9	ZN449_HUMAN	zinc finger protein 449	276					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TGGGAAACCCCCCCAGAGGAT	0.438													28	64					0	0	0.000878237	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993246	140993246	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:140993246C>T	uc004fbt.2	+	4	342	c.56C>T	c.(55-57)TCT>TTT	p.S19F	MAGEC1_uc010nsl.1_5'UTR	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	19							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CAGAGTTCCTCTGAGAGTCCT	0.488										HNSCC(15;0.026)			35	60					0	0	0.000191422	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993839	140993839	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:140993839T>C	uc004fbt.2	+	4	935	c.649T>C	c.(649-651)TCC>CCC	p.S217P	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	217							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTTCCAGAGTTCCCCTGAGAG	0.493										HNSCC(15;0.026)			9	200					0	0	0.000566183	0	0
CXorf40A	91966	broad.mit.edu	37	X	148627267	148627267	+	Silent	SNP	C	T	T			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chrX:148627267C>T	uc004fdb.2	+	4	363	c.91C>T	c.(91-93)CTG>TTG	p.L31L	CXorf40A_uc011mxm.1_Silent_p.L31L|CXorf40A_uc011mxn.1_Silent_p.L31L|CXorf40A_uc004fdd.2_Silent_p.L31L|CXorf40A_uc004fde.1_Silent_p.L31L|CXorf40A_uc011mxo.1_Missense_Mutation_p.A120V|CXorf40A_uc004fdg.2_Silent_p.L31L|CXorf40A_uc004fdf.2_Silent_p.L31L|CXorf40A_uc004fdh.2_Silent_p.L31L|CXorf40A_uc010nsy.2_Silent_p.L31L|CXorf40A_uc004fdi.2_Silent_p.L48L	NM_178124	NP_835225	Q8TE69	CX04A_HUMAN	chromosome X open reading frame 40	31							protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					GCGTCCCCTGCTGAGCAGCCA	0.592													7	35					0	0	0.000157383	0	0
PADI4	23569	broad.mit.edu	37	1	17668570	17668571	+	Frame_Shift_Ins	INS	-	G	G	rs34743635		TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:17668570_17668571insG	uc001baj.2	+	7	813_814	c.785_786insG	c.(784-786)CCGfs	p.P262fs	PADI4_uc009vpc.2_Frame_Shift_Ins_p.P262fs	NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	262					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	ACCGACTTCCCGGGGCTCATTA	0.634													11	90	---	---	---	---					
LEPR	3953	broad.mit.edu	37	1	66102426	66102429	+	Frame_Shift_Del	DEL	TCTA	-	-			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr1:66102426_66102429delTCTA	uc001dci.2	+	20	3428_3431	c.3226_3229delTCTA	c.(3226-3231)TCTATCfs	p.S1076fs	LEPR_uc009waq.2_3'UTR	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	1076_1077	Cytoplasmic (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		TGATAAAAAGTCTATCTATTATTT	0.402													17	136	---	---	---	---					
RFXAP	5994	broad.mit.edu	37	13	37393673	37393673	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr13:37393673delC	uc001uvu.1	+	1	335	c.179delC	c.(178-180)GCCfs	p.A60fs		NM_000538	NP_000529	O00287	RFXAP_HUMAN	regulatory factor X-associated protein	60						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)	1		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)		all cancers(112;3.5e-07)|Epithelial(112;1.27e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.0069)|BRCA - Breast invasive adenocarcinoma(63;0.0116)|GBM - Glioblastoma multiforme(144;0.0405)		GAGGCTGCGGCCCCCGGGGGC	0.706													2	4	---	---	---	---					
HCN4	10021	broad.mit.edu	37	15	73660292	73660292	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr15:73660292delC	uc002avp.2	-	1	1314	c.320delG	c.(319-321)GGCfs	p.G107fs		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	107	Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		GCTGCCGCCGCCCCGGCTGCC	0.677													2	4	---	---	---	---					
NLK	51701	broad.mit.edu	37	17	26449708	26449708	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr17:26449708delA	uc010crj.2	+	2	750	c.538delA	c.(538-540)AAAfs	p.K180fs	NLK_uc010cri.1_RNA	NM_016231	NP_057315	Q9UBE8	NLK_HUMAN	nemo like kinase	180	Protein kinase.				intracellular protein kinase cascade|negative regulation of Wnt receptor signaling pathway|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|serine phosphorylation of STAT3 protein|transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|MAP kinase activity|SH2 domain binding|transcription factor binding|ubiquitin protein ligase binding			ovary(1)|lung(1)|central_nervous_system(1)	3	all_lung(13;0.000343)|Lung NSC(42;0.00184)			UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		GGTCTCTTGCAAAAGGGTCTT	0.408													40	63	---	---	---	---					
PEG3	5178	broad.mit.edu	37	19	57347474	57347475	+	Splice_Site	DEL	TG	-	-			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr19:57347474_57347475delTG	uc002qnv.2	-	2	146	c.-248_splice	c.e2-1		ZIM2_uc010ygq.1_Splice_Site|ZIM2_uc010ygr.1_Splice_Site|ZIM2_uc002qnr.2_Splice_Site|ZIM2_uc002qnq.2_Splice_Site|ZIM2_uc010etp.2_Splice_Site|ZIM2_uc010ygs.1_Splice_Site|PEG3_uc002qnw.2_Splice_Site|PEG3_uc002qnx.2_Splice_Site|PEG3_uc010etr.2_Splice_Site	NM_006210	NP_006201	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1						apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		AAGGCAAAGCTGTAGAGGAAAA	0.470													2	4	---	---	---	---					
EIF2AK3	9451	broad.mit.edu	37	2	88874269	88874270	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr2:88874269_88874270delCT	uc002stc.3	-	13	2933_2934	c.2731_2732delAG	c.(2731-2733)AGGfs	p.R911fs		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	911	Cytoplasmic (Potential).|Protein kinase.				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						ACACACGCTCCTCTCTCTCTCC	0.465													7	981	---	---	---	---					
CBLB	868	broad.mit.edu	37	3	105412365	105412367	+	In_Frame_Del	DEL	GGA	-	-			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:105412365_105412367delGGA	uc003dwc.2	-	13	2347_2349	c.2025_2027delTCC	c.(2023-2028)CCTCCA>CCA	p.675_676PP>P	CBLB_uc011bhi.1_In_Frame_Del_p.697_698PP>P|CBLB_uc003dwd.1_In_Frame_Del_p.675_676PP>P|CBLB_uc003dwe.1_In_Frame_Del_p.675_676PP>P	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	675_676	Pro-rich.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						GGTGGTAACTGGAGGAGGAGGAG	0.414			Mis S		AML								9	44	---	---	---	---					
COL6A6	131873	broad.mit.edu	37	3	130300683	130300685	+	In_Frame_Del	DEL	CTC	-	-			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr3:130300683_130300685delCTC	uc010htl.2	+	8	3857_3859	c.3826_3828delCTC	c.(3826-3828)CTCdel	p.L1276del	COL6A6_uc003eni.3_5'Flank	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1276	VWFA 7.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						ACCATCTCTTCTCAATGCAAACC	0.365													31	296	---	---	---	---					
FGF10	2255	broad.mit.edu	37	5	44388533	44388534	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-D3-A2JN-06A-11D-A196-08	TCGA-D3-A2JN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec0ae00-74b8-4d3f-b9e1-af49d3cd6f11	55241a91-a843-4d48-9a49-9720edc9642a	g.chr5:44388533_44388534delAG	uc003jog.1	-	1	251_252	c.251_252delCT	c.(250-252)TCTfs	p.S84fs		NM_004465	NP_004456	O15520	FGF10_HUMAN	fibroblast growth factor 10 precursor	84					actin cytoskeleton reorganization|activation of MAPK activity|bud outgrowth involved in lung branching|ERK1 and ERK2 cascade|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|insulin receptor signaling pathway|lacrimal gland development|lung saccule development|mesonephros development|negative regulation of cell cycle arrest|positive regulation of ATPase activity|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of DNA repair|positive regulation of DNA replication|positive regulation of epithelial cell migration|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of ERK1 and ERK2 cascade|positive regulation of hair follicle cell proliferation|positive regulation of keratinocyte migration|positive regulation of keratinocyte proliferation|positive regulation of lymphocyte proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of Ras protein signal transduction|positive regulation of transcription, DNA-dependent|positive regulation of urothelial cell proliferation|protein localization at cell surface|radial glial cell differentiation|regulation of saliva secretion|response to protein stimulus|secretion by lung epithelial cell involved in lung growth|tear secretion|thymus development|urothelial cell proliferation	cell surface|extracellular space|nucleus|plasma membrane	chemoattractant activity|growth factor activity|heparin binding|type 2 fibroblast growth factor receptor binding			lung(3)	3	Lung NSC(6;1.12e-06)					ACTTGGTGAAAGAGAATAGCTT	0.510													10	70	---	---	---	---					
